BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026247
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 24/129 (18%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+ +L DD +R +L+ LL + ++V CV+ ++ L+ +
Sbjct: 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA------------------ 55
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV---SSWKDVPVVVMSSENVPSRVTMCLEEG 164
E + ++ D MPGM G D+LK+L+V S + PVVV+S++ P + C + G
Sbjct: 56 ---EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAG 112
Query: 165 AEEFLLKPV 173
A FL KPV
Sbjct: 113 ARAFLAKPV 121
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL VDDS + RKI+ L+ Y+V ++G ALE L S +P
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---------SEFTP-------- 47
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+LI+ D MP M G+ +LK+L+ WK +PV+V++++ ++ L GA + +
Sbjct: 48 ----DLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVM 103
Query: 170 LKP 172
KP
Sbjct: 104 RKP 106
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L V+DS + L+++L + YQ V +G +A+ +L L
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL-------------------- 49
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+R +LI++D MP M GY L + LK + +PV++++ + P V LE GA++F+
Sbjct: 50 -TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFI 108
Query: 170 LKPVRLSDLEKLQPRLLKSPNRS 192
KP + L RLL R+
Sbjct: 109 TKPCKDVVLASHVKRLLSGVKRT 131
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 22/127 (17%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLS 106
+ +L VDDS R+I++N L Y+ V + G +A E L ++NA L
Sbjct: 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL--------DANADTKVL- 55
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGA 165
+TD+ MP M G DL+K+++ S +K++P++++++E + V L+ G
Sbjct: 56 -----------ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGV 104
Query: 166 EEFLLKP 172
+++KP
Sbjct: 105 NNYIVKP 111
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 22/127 (17%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLS 106
+ +L VDDS R+I++N L Y+ V + G +A E L ++NA L
Sbjct: 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL--------DANADTKVL- 55
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGA 165
+TD+ MP M G DL+K+++ S +K++P++++++E + V L+ G
Sbjct: 56 -----------ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGV 104
Query: 166 EEFLLKP 172
+++KP
Sbjct: 105 NNYIVKP 111
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL VDDS + RKI+ L+ Y+V ++G ALE L S +P
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---------SEFTP-------- 47
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLK-VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+LI+ MP M G+ +LK+L+ WK +PV+V++++ ++ L GA + +
Sbjct: 48 ----DLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVM 103
Query: 170 LKP 172
KP
Sbjct: 104 RKP 106
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 23/125 (18%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+L VDD ++L +LR + + G +AL T
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL---------------------TAV 45
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E R +L++ D +PGM G D+ + L+ S VP+V+++++ V + LE GA++++
Sbjct: 46 RELRPDLVLLDLMLPGMNGIDVCRVLRADSG--VPIVMLTAKTDTVDVVLGLESGADDYI 103
Query: 170 LKPVR 174
+KP +
Sbjct: 104 MKPFK 108
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 22/127 (17%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLS 106
+ +L VDDS R+I++N L Y+ V + G +A E L ++NA L
Sbjct: 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL--------DANADTKVL- 55
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGA 165
+T + MP M G DL+K+++ S +K++P++++++E + V L+ G
Sbjct: 56 -----------ITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGV 104
Query: 166 EEFLLKP 172
+++KP
Sbjct: 105 NNYIVKP 111
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 24/134 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+L VDD R+I++NLLR + T D G AL L
Sbjct: 15 ILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML--------------------- 53
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
++ + ++TD+ MPGM G DLLK ++ K +PV+++++E ++ + G +
Sbjct: 54 KKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGY 113
Query: 169 LLKPVRLSDL-EKL 181
++KP + L EKL
Sbjct: 114 IVKPFTAATLKEKL 127
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD I+R++L + L YQ + G AL L
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL---------------------S 49
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
++ ++++++D MP M GY L +R++ +PV+ +++ + CLE G + L
Sbjct: 50 KNHIDIVLSDVNMPNMDGYRLTQRIRQLGLT-LPVIGVTANALAEEKQRCLESGMDSCLS 108
Query: 171 KPVRL 175
KPV L
Sbjct: 109 KPVTL 113
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD I+R++L + L YQ + G AL L
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL---------------------S 170
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
++ ++++++D MP M GY L +R++ +PV+ +++ + CLE G + L
Sbjct: 171 KNHIDIVLSDVNMPNMDGYRLTQRIRQLGLT-LPVIGVTANALAEEKQRCLESGMDSCLS 229
Query: 171 KPVRL 175
KPV L
Sbjct: 230 KPVTL 234
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 22/122 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
V VDD + R+ L NLLR + ++V D LE+ ++
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEH--------------------RRP 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E L++ D MPGM+G +L ++L S +P+V +++ ++ GA EFL
Sbjct: 47 EQHGCLVL-DMRMPGMSGIELQEQLTAIS-DGIPIVFITAHGDIPMTVRAMKAGAIEFLP 104
Query: 171 KP 172
KP
Sbjct: 105 KP 106
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD + ++LE L Y+V+ G P+ L+
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDG--------------------PTALAMAAR 44
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ ++I+ D MPGM G+ + ++LK + + +PVV++++ + LE GA +FL
Sbjct: 45 DL-PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFL 103
Query: 170 LKPV 173
KP+
Sbjct: 104 TKPI 107
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD + ++LE L Y+V+ G P+ L+
Sbjct: 4 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDG--------------------PTALAMAAR 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ ++I+ D MPGM G+ + ++LK + + +PVV++++ + LE GA +FL
Sbjct: 44 DL-PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFL 102
Query: 170 LKPV 173
KP+
Sbjct: 103 TKPI 106
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDGGTGRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 109 KPFTAATLE 117
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174
+LI+ D +P G + ++ L+ W VPV+V+S+ + S L+ GA+++L KP
Sbjct: 47 DLIILDLGLPDGDGIEFIRDLR--QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFG 104
Query: 175 LSDLE 179
+ +L+
Sbjct: 105 IGELQ 109
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 51 VLAVDDSLIDRKILENLLR---VSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+L V+DS D + LL+ V + C+ +GD+AL++L + S +P
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCI-TGDQALDFL-----YQTGSYCNPDI--- 59
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAE 166
R +I+ D +PG G ++L+ +K K +PVV+M++ + P + +C
Sbjct: 60 ---APRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSIS 116
Query: 167 EFLLKPVRLSDLEKLQPRLLK 187
+++KP+ + L + +K
Sbjct: 117 SYIVKPLEIDRLTETVQTFIK 137
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
L VDD R+I+ NLL+ + V + G AL K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL---------------------NKLQ 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
I++D+ MP M G +LLK ++ S+ +PV+++++E + + GA ++
Sbjct: 47 AGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYV 106
Query: 170 LKPVRLSDLEK 180
+KP + LE+
Sbjct: 107 VKPFTAATLEE 117
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
L VDD R+I+ NLL+ + V + G AL K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL---------------------NKLQ 47
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
I++D+ MP M G +LLK ++ S+ +PV+++++E + + GA ++
Sbjct: 48 AGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYV 107
Query: 170 LKPVRLSDLEK 180
+KP + LE+
Sbjct: 108 VKPFTAATLEE 118
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+LI+ D+ +PG +G +K LK S +D+PVV++++ LE GA++++ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKP 106
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 23/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD ILE LR Y+V C G++A+E + E
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV---------------------E 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E + +LI+ D +P G ++ + +V D+P++++++++ + LE GA++++
Sbjct: 44 ELQPDLILLDIMLPNKDGVEVCR--EVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVT 101
Query: 171 KPVRLSDL 178
KP +L
Sbjct: 102 KPFSTREL 109
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 23/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD ILE LR Y+V C G++A+E + E
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV---------------------E 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E + +LI+ D +P G ++ + +V D+P++++++++ + LE GA++++
Sbjct: 44 ELQPDLILLDIMLPNKDGVEVCR--EVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVT 101
Query: 171 KPVRLSDL 178
KP +L
Sbjct: 102 KPFSTREL 109
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 22/123 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD + LE +LR + Y+V SG++AL+ + +N +A
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQI-----YKNLPDA---------- 51
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
++ D +PG+ GY L KR++ K +P++ ++++ S E GA ++L
Sbjct: 52 ------LICDVLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYL 105
Query: 170 LKP 172
KP
Sbjct: 106 AKP 108
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+LI+ D+ +PG +G +K LK S +D+PVV++++ LE GA++++ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKP 106
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
I+ D+ MP M G +LLK ++ S+ +PV+++++E + + GA +++
Sbjct: 48 GGFGFIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 10 LVVDDFSTGRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 49
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 50 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 109
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 110 KPFTAATLEE 119
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 51 VLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
++ ++D L +++E +R + ++ G AL YL D S +
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK------------SGR 54
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
R L++ D +P TG D+LK +K + + PVV++++ + + C + GA
Sbjct: 55 VSAGRAQLVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANV 114
Query: 168 FLLKPV 173
++ KPV
Sbjct: 115 YITKPV 120
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+++++TD MP ++G D+L+ +K + V++++ + ++EGA E+L KPV
Sbjct: 50 IDVVITDMKMPKLSGMDILREIK-KITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPV 108
Query: 174 RLSDL 178
DL
Sbjct: 109 TAQDL 113
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV++++SE + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 109 KPFTAATLEE 118
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E V + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 64 LENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123
LE LR+S ++V G +AL E+R + I+ D M
Sbjct: 23 LERGLRLSGFEVATAVDGAEALR---------------------SATENRPDAIVLDINM 61
Query: 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQP 183
P + G ++ L+ DVPV V+S+ + LE GA+++L+KP L++L
Sbjct: 62 PVLDGVSVVTALRAMD-NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVK 120
Query: 184 RLLK 187
LL+
Sbjct: 121 ALLR 124
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
L VDD+ R+I+ NLL+ + V + G AL K +
Sbjct: 5 LVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDAL---------------------NKLQ 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+++D+ MP M G +LLK ++ + +PV++ ++E + + GA ++
Sbjct: 44 AGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYV 103
Query: 170 LKPVRLSDLEK 180
+KP + LE+
Sbjct: 104 VKPFTAATLEE 114
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E + +L++ D P + G +L++R++ ++ + P++V+S V S L GA ++L
Sbjct: 46 ESEQPDLVICDLRXPQIDGLELIRRIRQTA-SETPIIVLSGAGVXSDAVEALRLGAADYL 104
Query: 170 LKPVRLSDLEKLQPRLLKSPNRS 192
+KP L DL L+ + ++ +R+
Sbjct: 105 IKP--LEDLAVLEHSVRRALDRA 125
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 23/109 (21%)
Query: 64 LENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123
L LLR ++ T V G AL + + + ++++ D +
Sbjct: 20 LAFLLRKEGFEATVVTDGPAAL---------------------AEFDRAGADIVLLDLML 58
Query: 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
PGM+G D+ K+L+ S VPV+++++ + + LE GA++++ KP
Sbjct: 59 PGMSGTDVCKQLRARS--SVPVIMVTARDSEIDKVVGLELGADDYVTKP 105
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
L VDD+ R+I NLL+ + V + G AL K +
Sbjct: 5 LVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDAL---------------------NKLQ 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+++D+ MP M G +LLK ++ + +PV+++++E + + GA ++
Sbjct: 44 AGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 103
Query: 170 LKPVRLSDLEK 180
+KP + LE+
Sbjct: 104 VKPFTAATLEE 114
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
K E +LI+ D +P G D+++RL+ +S +P++V+++ + L GA++
Sbjct: 76 KAREDHPDLILLDLGLPDFDGGDVVQRLRKNSA--LPIIVLTARDTVEEKVRLLGLGADD 133
Query: 168 FLLKP 172
+L+KP
Sbjct: 134 YLIKP 138
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 82 DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWK 141
++AL GL N N + L++K +++++D MPGM G LLK++K
Sbjct: 20 ERALAGAGLTCTTFENGNEVLAALASKTP----DVLLSDIRMPGMDGLALLKQIKQRH-P 74
Query: 142 DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186
+PV++M++ + ++GA ++L KP + + L R +
Sbjct: 75 MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 82 DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWK 141
++AL GL N N + L++K +++++D MPGM G LLK++K
Sbjct: 20 ERALAGAGLTCTTFENGNEVLAALASKTP----DVLLSDIRMPGMDGLALLKQIKQRH-P 74
Query: 142 DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186
+PV++M++ + ++GA ++L KP + + L R +
Sbjct: 75 MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 109 KPFTAATLEE 118
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 109 KPFTAATLEE 118
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 82 DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWK 141
++AL GL N N + L++K + ++++D MPGM G LLK++K
Sbjct: 20 ERALAGAGLTCTTFENGNEVLAALASKTPD----VLLSDIRMPGMDGLALLKQIKQRH-P 74
Query: 142 DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186
+PV++M++ + ++GA ++L KP + + L R +
Sbjct: 75 MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+LI+ ++ +PG +G +K LK S +D+PVV++++ LE GA++++ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKP 106
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 109 KPFTAATLEE 118
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E + +L++ D P + G +L++R++ ++ + P++V+S V S L GA ++L
Sbjct: 46 ESEQPDLVICDLRXPQIDGLELIRRIRQTA-SETPIIVLSGAGVMSDAVEALRLGAADYL 104
Query: 170 LKPVRLSDLEKLQPRLLKSPNRS 192
+KP L DL L+ + ++ +R+
Sbjct: 105 IKP--LEDLAVLEHSVRRALDRA 125
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 49 GGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 109 KPFTAATLE 117
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
+I+ D MPG+ G LL + + + +D+P++V+S++ P+ + GA ++L+K
Sbjct: 65 TVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 24/133 (18%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+L V+D + R +L++ SS T V + D +D LE +P
Sbjct: 9 QILIVEDEQVFRSLLDSWF--SSLGATTVLAADG-------VDALELLGGFTP------- 52
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+L++ D MP M G LL+ ++ + PV+V+S+ + + L G E+ L
Sbjct: 53 -----DLMICDIAMPRMNGLKLLEHIR-NRGDQTPVLVISATENMADIAKALRLGVEDVL 106
Query: 170 LKPVRLSDLEKLQ 182
LKPV+ DL +L+
Sbjct: 107 LKPVK--DLNRLR 117
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVV 108
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 109 KPFTAATLEE 118
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
L VDD R+I+ NLL+ + V + G AL K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL---------------------NKLQ 47
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+++D+ MP M G +LLK ++ + +PV+++++E + + GA ++
Sbjct: 48 AGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 107
Query: 170 LKPVRLSDLEK 180
+KP + LE+
Sbjct: 108 VKPFTPATLEE 118
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
L VDD R+I+ NLL+ + V + G AL K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL---------------------NKLQ 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+++D+ MP M G +LLK ++ + +PV+++++E + + GA ++
Sbjct: 47 AGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 106
Query: 170 LKPVRLSDLEK 180
+KP + LE+
Sbjct: 107 VKPFTPATLEE 117
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K + +++D+ MP M G +LLK ++ + +PV+++++E + + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 167 EFLLKPVRLSDLE 179
+++KP + LE
Sbjct: 104 GYVVKPFTAATLE 116
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDESTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++ + + GA +++
Sbjct: 48 GGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 20/137 (14%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL VDD+ ++R+ L L+ D ++A YL
Sbjct: 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYL--------------------HY 49
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ R+ L +TD +G DL++ ++ S + ++V+S + G +FLL
Sbjct: 50 QKRIGLXITDLRXQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVXHLGVVDFLL 109
Query: 171 KPVRLSDLEKLQPRLLK 187
KPV L L +L + LK
Sbjct: 110 KPVDLGKLLELVNKELK 126
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 51
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV++++++ + + GA +++
Sbjct: 52 GGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVV 111
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 112 KPFTAATLEE 121
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++ +E + + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV++++ E + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 109 KPFTAATLEE 118
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV++++ E + + GA +++
Sbjct: 49 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 109 KPFTAATLEE 118
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDESTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++ + + GA +++
Sbjct: 48 GGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 100 ASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVT 158
A P + + + +I+ D MPG+ G L++ + + +D+P++V+S++ P +
Sbjct: 48 ADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKS 107
Query: 159 MCLEEGAEEFLLK 171
GA ++L+K
Sbjct: 108 AAFAAGANDYLVK 120
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K + +++D+ MP M G +LLK ++ + +PV+++++E + + GA
Sbjct: 43 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 102
Query: 167 EFLLKPVRLSDLE 179
+++KP + LE
Sbjct: 103 GYVVKPFTAATLE 115
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K + +++D+ MP M G +LLK ++ + +PV+++++E + + GA
Sbjct: 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 103
Query: 167 EFLLKPVRLSDLE 179
+++KP + LE
Sbjct: 104 GYVVKPFTAATLE 116
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K + +++D+ MP M G +LLK ++ + +PV+++++E + + GA
Sbjct: 46 KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGAS 105
Query: 167 EFLLKPVRLSDLE 179
+++KP + LE
Sbjct: 106 GYVVKPFTAATLE 118
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDESTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++ + + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
V +DD RK ++ L ++ + V+ S +AL L
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL---------------------S 44
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
++++D MPGM G L +++ ++ D+P+++++ +++GA +F+
Sbjct: 45 ADFAGIVISDIRMPGMDGLALFRKI-LALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA 103
Query: 171 KPVRLSDLEKLQPRLLKSPNRS 192
KP RL++S R+
Sbjct: 104 KPFA-------ADRLVQSARRA 118
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
V +DD RK ++ L ++ + V+ S +AL L
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL---------------------S 44
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
++++D MPGM G L +++ ++ D+P+++++ +++GA +F+
Sbjct: 45 ADFAGIVISDIRMPGMDGLALFRKI-LALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA 103
Query: 171 KPVRLSDLEKLQPRLLKSPNRS 192
KP RL++S R+
Sbjct: 104 KPFA-------ADRLVQSARRA 118
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 51
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV++++++ + + GA +++
Sbjct: 52 GGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVV 111
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 112 KPFTAATLE 120
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDQSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++ + + GA +++
Sbjct: 48 GGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++ +E + + GA +++
Sbjct: 48 GGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDESTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++ + + GA +++
Sbjct: 48 GGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 108 KPFTAATLEE 117
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 51
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++ + + GA +++
Sbjct: 52 GGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVV 111
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 112 KPFTAATLE 120
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 25/129 (19%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
VL VDD+ R +L++++ + Y+V +G +A+E K
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE---------------------K 42
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+E + +++ D MP M G D +K +K+ + ++V S+ + V ++ GA++
Sbjct: 43 YKELKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKD 100
Query: 168 FLLKPVRLS 176
F++KP + S
Sbjct: 101 FIVKPFQPS 109
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
H+L V+D L+ R L+++ Y V G + + L
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILS-------------------- 44
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E +NL++ D +PG G L + L+ +V + ++ + + LE GA++++
Sbjct: 45 -EYDINLVIXDINLPGKNGLLLARELR--EQANVALXFLTGRDNEVDKILGLEIGADDYI 101
Query: 170 LKP 172
KP
Sbjct: 102 TKP 104
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 25/129 (19%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
VL VDD+ R +L++++ + Y+V +G +A+E K
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE---------------------K 41
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+E + +++ D MP M G D +K +K+ + ++V S+ + V ++ GA++
Sbjct: 42 YKELKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAIKAGAKD 99
Query: 168 FLLKPVRLS 176
F++KP + S
Sbjct: 100 FIVKPFQPS 108
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 8 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 48
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ D +PGM G ++LKR+KV +++ V++M++ + E GA
Sbjct: 49 --RPDLVLLDMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTHFA 105
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 106 KPFDIDEI 113
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 23/123 (18%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
H+L V+D L+ R L+++ Y V G + + L
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-------------------- 44
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E +NL++ D +PG G L + L+ +V ++ ++ + + LE GA++++
Sbjct: 45 -EYDINLVIMDINLPGKNGLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYI 101
Query: 170 LKP 172
KP
Sbjct: 102 TKP 104
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ D +PGM G ++LKR+KV +++ V++M++ + E GA
Sbjct: 47 --RPDLVLLDMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 104 KPFDIDEI 111
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++ + MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 48 GGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 51
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++D+ MP M G +LLK ++ + +PV+++++ + + GA +++
Sbjct: 52 GGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVV 111
Query: 171 KPVRLSDLEK 180
KP + LE+
Sbjct: 112 KPFTAATLEE 121
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 48
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++ + MP M G +LLK ++ + +PV+++++E + + GA +++
Sbjct: 49 GGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV 108
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 109 KPFTAATLE 117
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 82 DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWK 141
++AL GL N N + L++K +++++ MPGM G LLK++K
Sbjct: 20 ERALAGAGLTCTTFENGNEVLAALASKTP----DVLLSXIRMPGMDGLALLKQIKQRH-P 74
Query: 142 DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186
+PV++M++ + ++GA ++L KP + + L R +
Sbjct: 75 MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
L VDD R+I+ NLL+ + V + G AL K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDAL---------------------NKLQ 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+++ + MP M G +LLK ++ + +PV+++++E + + GA ++
Sbjct: 47 AGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYV 106
Query: 170 LKPVRLSDLEK 180
+KP + LE+
Sbjct: 107 VKPFTAATLEE 117
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL VDD ++L L+ ++V +G +AL+ +
Sbjct: 26 VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALD---------------------RAR 64
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E+R + ++ D PG G+ +L+RL+ D P + +++ + L G ++++
Sbjct: 65 ETRPDAVILDVXXPGXDGFGVLRRLRADG-IDAPALFLTARDSLQDKIAGLTLGGDDYVT 123
Query: 171 KPVRLSDL 178
KP L ++
Sbjct: 124 KPFSLEEV 131
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 22/131 (16%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
+VL ++D + R +LE L + +V + G +A + L
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS------------------- 41
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E N+++ +P + G ++LK +K S + V+V++ ++ GA +F
Sbjct: 42 --EKHFNVVLLXLLLPDVNGLEILKWIKERS-PETEVIVITGHGTIKTAVEAMKMGAYDF 98
Query: 169 LLKPVRLSDLE 179
L KP L ++E
Sbjct: 99 LTKPCMLEEIE 109
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 26/125 (20%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL V+DS + + ++ Y + V++G A++++ E
Sbjct: 7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI---------------------E 45
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVP--VVVMSSENVPSRVTMCLEEGAEEF 168
S+ LI+ D +P M+G D+L + + D+P V++ ++ +++GAE+F
Sbjct: 46 RSKPQLIILDLKLPDMSGEDVLDWI---NQNDIPTSVIIATAHGSVDLAVNLIQKGAEDF 102
Query: 169 LLKPV 173
L KP+
Sbjct: 103 LEKPI 107
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ D +PGM G ++LKR+KV +++ V++M++ + E GA
Sbjct: 47 --RPDLVLLDMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTAFA 103
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 104 KPFDIDEI 111
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTM-CLEEGAEEF 168
EE R ++++ D MP + G +L+R++ + ++ P V+M + VT +E GA F
Sbjct: 45 EEKRPDILLLDIIMPHLDGLAVLERIR-AGFEHQPNVIMLTAFGQEDVTKKAVELGASYF 103
Query: 169 LLKPVRLSDL 178
+LKP + +L
Sbjct: 104 ILKPFDMENL 113
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 4 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 44
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ D +PGM G ++LKR+KV +++ V++M++ + E GA
Sbjct: 45 --RPDLVLLDMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTHFA 101
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 102 KPFDIDEI 109
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
V VDD R ++ +L + + + DSG + ++ L KK
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLL-------------------KKG 50
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
S V ++ D PG G+D ++ + +S + + +V ++++N P + L+E +++
Sbjct: 51 FSGV--VLLDIXXPGXDGWDTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYI 108
Query: 170 LKPVRLSDL 178
KP DL
Sbjct: 109 TKPFDNEDL 117
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ D +PGM G ++LKR+KV +++ V++M++ E GA
Sbjct: 47 --RPDLVLLDMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMAQESKELGALTHFA 103
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 104 KPFDIDEI 111
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ D +PGM G ++LKR+KV +++ V++M++ + E GA
Sbjct: 47 --RPDLVLLDMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 104 KPFDIDEI 111
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+LI+ + +PG +G +K LK S +D+PVV++++ LE GA++ + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKP 106
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++ + MP M G +LLK ++ + +PV+++ +E + + GA +++
Sbjct: 48 GGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 31/145 (21%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL +D++ + R + + LL +VT V S ++ L +
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV--------------------SH 49
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDV---PVVVMSSENV-PSRVTMCLEEGAE 166
E +V + D CMPG+ Y + R+ K P++V S N S C+ G +
Sbjct: 50 EHKV--VFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLD 107
Query: 167 EFLLKPVRLSDL-----EKLQPRLL 186
LLKPV L ++ + L+PR+L
Sbjct: 108 GVLLKPVSLDNIRDVLSDLLEPRVL 132
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+LI+T+ MP ++G DL LK + +PV+ +S L+ G +F+ KPV
Sbjct: 54 HLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
Query: 174 RLSDLEKLQPRLLK 187
L R+LK
Sbjct: 114 NAIRLSARIKRVLK 127
>pdb|2JK1|A Chain A, Crystal Structure Of The Wild-Type Hupr Receiver Domain
pdb|2VUI|B Chain B, Crystal Structure Of The Hupr Receiver Domain In
Inhibitory Phospho-State
Length = 139
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
EE V +I+ D MPG TG D L ++ + V +++ + S + + G +FL
Sbjct: 41 EEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFL 100
Query: 170 LKP 172
KP
Sbjct: 101 TKP 103
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+LI+ + +PG +G +K L+ S +D+PVV++++ LE GA++ + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKP 106
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ D +PGM G ++ KR+KV +++ V++M++ + E GA
Sbjct: 47 --RPDLVLLDMKIPGMDGIEIAKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 104 KPFDIDEI 111
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+++M D M GM G+ + R+K + + ++ V+ M+ V+ + GAE KP+
Sbjct: 56 DVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPL 115
Query: 174 RLSDLEKLQPRLLK 187
+ LEK +L++
Sbjct: 116 NFTLLEKTIKQLVE 129
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L VDD R+I+ NLL+ + +N+E + + K +
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGF------------------NNVEEAEDGVDAL--NKLQA 47
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++ + MP M G +LLK ++ + +PV+++ +E + + GA +++
Sbjct: 48 GGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVV 107
Query: 171 KPVRLSDLE 179
KP + LE
Sbjct: 108 KPFTAATLE 116
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 73 YQVTCVDSGD---KALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129
Y V VD + K+L ++ ++ + S + R +++TD MP M+G
Sbjct: 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGV 63
Query: 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+LL+ L +V+ +VP V ++ GA +F+ KP
Sbjct: 64 ELLRNLGDLKINIPSIVITGHGDVPMAVE-AMKAGAVDFIEKP 105
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 51 VLAVDDSLIDRKILENLLR---VSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+L V+D+ +++++++ +L + + ++ C G +A + + L++
Sbjct: 4 ILVVEDNHVNQEVIKRMLNLEGIENIELAC--DGQEAFDKV--------------KELTS 47
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
K E N+I D MP + G K ++ P+V +++ S + CLE G
Sbjct: 48 KGE--NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNG 105
Query: 168 FLLKPVR 174
FL KP++
Sbjct: 106 FLSKPIK 112
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
F+VL VDDS+ K L + + + ++ ++ + + K
Sbjct: 37 FNVLIVDDSVFTVKQLTQIFTSEGFNI------------------IDTAADGEEAVIKYK 78
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
++++ MP M G L + + K+ V+++S+ V CL +GA+ F
Sbjct: 79 NHYPNIDIVTLXITMPKMDGITCLSNI-MEFDKNARVIMISALGKEQLVKDCLIKGAKTF 137
Query: 169 LLKPV-RLSDLEKLQPRLLK 187
++KP+ R L+++ +K
Sbjct: 138 IVKPLDRAKVLQRVMSVFVK 157
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD +L+ L S Y V G++AL+ K E
Sbjct: 6 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK---------------------KAE 44
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ +LI+ D +P + G ++ K+L+ P++++++++ + LE GA++++
Sbjct: 45 TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM-FPILMLTAKDEEFDKVLGLELGADDYMT 103
Query: 171 KP 172
KP
Sbjct: 104 KP 105
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 51 VLAVDDSLIDRKILENLLR---VSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+L V+D+ +++++++ +L + + ++ C G +A + + L++
Sbjct: 5 ILVVEDNHVNQEVIKRMLNLEGIENIELAC--DGQEAFDKV--------------KELTS 48
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
K E N+I D MP + G K ++ P+V +++ S + CLE G
Sbjct: 49 KGE--NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNG 106
Query: 168 FLLKPVR 174
FL KP++
Sbjct: 107 FLSKPIK 113
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 51 VLAVDDSLIDRKILEN-LLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
VL VDD+ I RK+ L ++ +V DSG +AL + L+ ++
Sbjct: 64 VLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLV-------------TEGLTQRE 110
Query: 110 EESRVNLIMTDYC-----MPGMTGYDL---LKRLKVSSWKDVPVVVMSSENVPS-RVTMC 160
E+ V+ + DY MP M GY+ +++++ S P++ +S + S
Sbjct: 111 EQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET 170
Query: 161 LEEGAEEFLLK 171
++ G + FL K
Sbjct: 171 IQAGMDAFLDK 181
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSWKDVP--VVVMSSENVPSRVTMCLEEGAEEFLLK 171
++ + DY MPGM G + V S+ ++P V+++S+ + P+ V L++GA FLLK
Sbjct: 63 DVALLDYRMPGMDGAQVAA--AVRSY-ELPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEK 180
MPGM G + L +L+ S +VV S N V L+ GA+ +LLK + DL K
Sbjct: 60 NMPGMNGLETLDKLREKSLSG-RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLK 117
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTM-CLEEGAEEF 168
EE R ++++ MP + G +L+R++ + ++ P V+M + VT +E GA F
Sbjct: 45 EEKRPDILLLXIIMPHLDGLAVLERIR-AGFEHQPNVIMLTAFGQEDVTKKAVELGASYF 103
Query: 169 LLKPVRLSDL 178
+LKP + +L
Sbjct: 104 ILKPFDMENL 113
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD R +L + YQ +G +AL+ + TK+
Sbjct: 6 ILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALD------------------IVTKE- 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
R +L++ +PGM G ++LKR+KV +++ V++M++ + E GA
Sbjct: 47 --RPDLVLLXMKIPGMDGIEILKRMKVID-ENIRVIIMTAYGELDMIQESKELGALTHFA 103
Query: 171 KPVRLSDL 178
KP + ++
Sbjct: 104 KPFDIDEI 111
>pdb|2VUH|B Chain B, Crystal Structure Of The D55e Mutant Of The Hupr Receiver
Domain
Length = 139
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
EE V +I+ + MPG TG D L ++ + V +++ + S + + G +FL
Sbjct: 41 EEEWVQVIICEQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDAGIHQFL 100
Query: 170 LKP 172
KP
Sbjct: 101 TKP 103
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
VL +D + R L +LR Y++ G +A+E
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVEL--------------------- 53
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
E + +L++ D MP G D +++S + P+VV+++ + V + GA +
Sbjct: 54 AELHKPDLVIMDVKMPRRDGIDAAS--EIASKRIAPIVVLTAFSQRDLVERARDAGAMAY 111
Query: 169 LLKPVRLSDL 178
L+KP +SDL
Sbjct: 112 LVKPFSISDL 121
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
T VL V+D+ ++ K+ +LL Y+ G AL +
Sbjct: 1 TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSAL---------------------S 39
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAE 166
E++ +LI+ D +P ++G ++ K LK +PVV +++ + E G E
Sbjct: 40 IARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCE 99
Query: 167 EFLLKPVRLSDLEKLQPRLLK 187
++ KP+ + + RLL+
Sbjct: 100 AYISKPISVVHFLETIKRLLE 120
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 99 NASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVT 158
AS + L + V+LI+ D +P G L + L+ S + +V S+ + V
Sbjct: 32 TASGAGLREIXQNQSVDLILLDINLPDENGLXLTRALRERSTVGIILVTGRSDRIDRIV- 90
Query: 159 MCLEEGAEEFLLKPVRLSDL 178
LE GA++++ KP+ L +L
Sbjct: 91 -GLEXGADDYVTKPLELREL 109
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 117 IMT-DYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
IMT D MP + G D+++ L+ + + P +++ S +++ + EGA+++L KP
Sbjct: 53 IMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKP 109
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K + +++D+ P G +LLK ++ + +PV+ +++E + + GA
Sbjct: 44 KLQAGGYGFVISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGAS 103
Query: 167 EFLLKPVRLSDLE 179
+++KP + LE
Sbjct: 104 GWVVKPFTAATLE 116
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 23/122 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD I++ + Y+V +G +ALE E
Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF---------------------E 42
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ ++I+ D +P + G ++ K ++ +S VP++++S+++ + LE GA++++
Sbjct: 43 AEQPDIIILDLMLPEIDGLEVAKTIRKTS--SVPILMLSAKDSEFDKVIGLELGADDYVT 100
Query: 171 KP 172
KP
Sbjct: 101 KP 102
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+L++ D + G +L +LK S K+VP++++ S + L GA+++L KP
Sbjct: 48 DLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107
Query: 174 RLSDL 178
+DL
Sbjct: 108 NRNDL 112
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 73 YQVTCVDSGD---KALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129
Y V VD + K+L ++ ++ + S + R +++T MP M+G
Sbjct: 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTXLRMPDMSGV 63
Query: 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+LL+ L +V+ +VP V ++ GA +F+ KP
Sbjct: 64 ELLRNLGDLKINIPSIVITGHGDVPMAVE-AMKAGAVDFIEKP 105
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174
G G D+ + L+ S VP+V ++++ V + LE GA++++ KP +
Sbjct: 61 GXNGIDVCRVLRADSG--VPIVXLTAKTDTVDVVLGLESGADDYIXKPFK 108
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 68 LRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK--KEESRV------NLIMT 119
LR + ++ V+ A E+L I SN P S +E R+ ++I+T
Sbjct: 3 LREVALKILIVEDDTDAREWLSTI-----ISNHFPEVWSAGDGEEGERLFGLHAPDVIIT 57
Query: 120 DYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
D P + G + L R+K K V+V+S+ + +E G FL KP+
Sbjct: 58 DIRXPKLGGLEXLDRIKAGGAKPY-VIVISAFSEXKYFIKAIELGVHLFLPKPI 110
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
+ +L VDDS + L Y+ SG++ LE L NA+P
Sbjct: 4 YTILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEAL----------NATPP----- 48
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+L++ D G++ L+R+K + +D+PV+ ++++ + E+
Sbjct: 49 ------DLVLLDIXXEPXDGWETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIED 102
Query: 168 FLLKP 172
++LKP
Sbjct: 103 YILKP 107
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+VL ++D + R +LE L + +V + G +A + L
Sbjct: 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-------------------- 41
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E N+++ D +P + G ++LK +K S + V+V++ ++ GA +FL
Sbjct: 42 -EKHFNVVLLDLLLPDVNGLEILKWIKERS-PETEVIVITGHGTIKTAVEAMKMGAYDFL 99
Query: 170 LKPVRLSDLE 179
KP L ++E
Sbjct: 100 TKPCMLEEIE 109
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV--TMC---LEEGAEEFLLKPVR---- 174
PG T YDL +RL++ W+ VP + E V MC E E LL+ +
Sbjct: 388 PGYTLYDLSERLRLRGWQ-VPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 446
Query: 175 -LSDLEKLQ 182
LSD KLQ
Sbjct: 447 YLSDHPKLQ 455
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV--TMC---LEEGAEEFLLKPVR---- 174
PG T YDL +RL++ W+ VP + E V MC E E LL+ +
Sbjct: 374 PGYTLYDLSERLRLRGWQ-VPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 432
Query: 175 -LSDLEKLQ 182
LSD KLQ
Sbjct: 433 YLSDHPKLQ 441
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV--TMC---LEEGAEEFLLKPVR---- 174
PG T YDL +RL++ W+ VP + E V MC E E LL+ +
Sbjct: 388 PGYTLYDLSERLRLRGWQ-VPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 446
Query: 175 -LSDLEKLQ 182
LSD KLQ
Sbjct: 447 YLSDHPKLQ 455
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
EE N+++ D MPGMTG ++L ++ ++ V+++++ P + + ++
Sbjct: 46 EEYNPNVVILDIEMPGMTGLEVLAEIR-KKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYV 104
Query: 170 LKPVRLSDL 178
LK + +L
Sbjct: 105 LKERSIEEL 113
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 116 LIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRL 175
+I+ D MP G + + +K +S V +V+ +V + V +++GA EFL KP +
Sbjct: 48 VIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVK-AIKKGAYEFLEKPFSV 106
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 23/122 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD I++ + Y+V +G +ALE E
Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF---------------------E 42
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ ++I+ +P + G ++ K ++ +S VP++++S+++ + LE GA++++
Sbjct: 43 AEQPDIIILXLMLPEIDGLEVAKTIRKTS--SVPILMLSAKDSEFDKVIGLELGADDYVT 100
Query: 171 KP 172
KP
Sbjct: 101 KP 102
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172
+++L+ D G +L++R++ + D V V+S+ + ++ GA +++LKP
Sbjct: 48 KIDLVFVD-VFEGEESLNLIRRIR-EEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKP 105
Query: 173 VRLSDLEKLQPRLLKSPNR 191
RL L + +++ S R
Sbjct: 106 FRLDYLLERVKKIISSTPR 124
>pdb|3KCN|A Chain A, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
pdb|3KCN|B Chain B, The Crystal Structure Of Adenylate Cyclase From
Rhodopirellula Baltica
Length = 151
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+L VDD D +L L R S+ +VT +SG P L+
Sbjct: 6 RILLVDD---DYSLLNTLKRNLSFDFEVTTCESG--------------------PEALAC 42
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
K+ ++I D PG G +++++ ++ S V + + ++++ + E
Sbjct: 43 IKKSDPFSVIXVDXRXPGXEGTEVIQKARLISPNSVYLXLTGNQDLTTAXEAVNEGQVFR 102
Query: 168 FLLKPVRLSDLE 179
FL KP + SD++
Sbjct: 103 FLNKPCQXSDIK 114
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 123 MPGMTGYDLL----KRLKVSSWKDVPVVVMSSENVPSRV-TMCLEEGAEEFLL 170
M G TG LL K+L+V ++ +PVV+ + +V + TM LE+ F++
Sbjct: 1 MTGKTGTQLLADKLKKLQVKDFQSIPVVIHENVSVYDAICTMFLEDVGTLFVV 53
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171
++ +LI + + G+ L K K+ + P+V + N + L G +++L+K
Sbjct: 47 NKYDLIFLEIILSDGDGWTLCK--KIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIK 104
Query: 172 PVRLSDLEKLQPRLLKSPN 190
P+ L L +L+ N
Sbjct: 105 PLNLEILYAKVKAILRRXN 123
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 116 LIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+I+ D P G + + +K +S V +V+ +V + V +++GA EFL KP
Sbjct: 47 VIVLDVWXPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVK-AIKKGAYEFLEKPF 103
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 115 NLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174
++ + D +P G L++R + S+ +P++V+++ L GA++++ KP
Sbjct: 46 DIAIVDLGLPDEDGLSLIRRWR-SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFH 104
Query: 175 LSDL 178
+ ++
Sbjct: 105 IEEV 108
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 68 LRVSSYQVTCVDSGDKALEYLG-LIDNLENN--SNASPSTLSTKKEESRVNLIMTDYCMP 124
L +Y V VD L L LI L N + SP + + V L+++D MP
Sbjct: 3 LNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMP 62
Query: 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG-AEEFLLKPVRLSDLEKL 181
M G L+++ S+ D+ VV+S + G FLLKP D+ K+
Sbjct: 63 EMGGEVFLEQV-AKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKV 119
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 90 LIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVM 148
++D+ N A K +E + +++ D MP M G D +K +K+ + ++V
Sbjct: 7 IVDDATNGREAVE-----KYKELKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVC 59
Query: 149 SSENVPSRVTMCLEEGAEEFLL 170
S+ + V ++ GA++F++
Sbjct: 60 SAMGQQAMVIEAIKAGAKDFIV 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,746,397
Number of Sequences: 62578
Number of extensions: 189814
Number of successful extensions: 612
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 146
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)