BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026247
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana
GN=ARR9 PE=1 SV=1
Length = 234
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/141 (63%), Positives = 113/141 (80%), Gaps = 1/141 (0%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
FHVLAVDDSL DRK++E LL+ SS QVT VDSG KALE+LGL + ++N + S
Sbjct: 9 FHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPVN 68
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+ VNLI+TDYCMPGMTGYDLLK++K SS ++D+PVV+MSSENVP+R++ CLEEGAEE
Sbjct: 69 HQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEE 128
Query: 168 FLLKPVRLSDLEKLQPRLLKS 188
F LKPVRL+DL KL+P ++K+
Sbjct: 129 FFLKPVRLADLNKLKPHMMKT 149
>sp|O80365|ARR8_ARATH Two-component response regulator ARR8 OS=Arabidopsis thaliana
GN=ARR8 PE=1 SV=1
Length = 225
Score = 181 bits (458), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 114/141 (80%), Gaps = 3/141 (2%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
FHVLAVDDSL DRK++E LL+ SS QVT VDSG KALE+LGL +++N + ST
Sbjct: 9 FHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGL--RVDDNDPNALSTSPQI 66
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+E +NLI+TDYCMPGMTGYDLLK++K S+ ++ +PVV+MSSENVP+R++ CLEEGAEE
Sbjct: 67 HQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEE 126
Query: 168 FLLKPVRLSDLEKLQPRLLKS 188
F LKPV+L+DL KL+P ++K+
Sbjct: 127 FFLKPVKLADLTKLKPHMMKT 147
>sp|Q9SB04|ARR5_ARATH Two-component response regulator ARR5 OS=Arabidopsis thaliana
GN=ARR5 PE=1 SV=2
Length = 184
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 114/148 (77%), Gaps = 10/148 (6%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
HVLAVDDS++DRK +E LLRVSS +VT VDS +AL+YLGL + ENNS S
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGL--DGENNS-------SVG 75
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
E+ ++NLIMTDY MPGMTGY+LLK++K SS ++++PVV+MSSEN+ R+ CLEEGAE+
Sbjct: 76 FEDLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAED 135
Query: 168 FLLKPVRLSDLEKLQPRLLKSPNRSCGN 195
FLLKPV+L+D+++L+ L+K+ R+ N
Sbjct: 136 FLLKPVKLADVKRLRDSLMKAEERAFKN 163
>sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana
GN=ARR4 PE=1 SV=1
Length = 259
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 113/147 (76%), Gaps = 11/147 (7%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
HVLAVDDSL+DR ++E LLR++S +VT VDSG +ALE+LGL +N AS +
Sbjct: 35 HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGL-----DNEKAS-----AEF 84
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+ +V+LI+TDYCMPGMTGY+LLK++K SS +++VPVV+MSSENV +R+ CLEEGA++F
Sbjct: 85 DRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDF 144
Query: 169 LLKPVRLSDLEKLQPRLLKSPNRSCGN 195
LLKPV+L+D+++L+ L K S GN
Sbjct: 145 LLKPVKLADVKRLRSHLTKDVKLSNGN 171
>sp|Q9ZWS9|ARR3_ARATH Two-component response regulator ARR3 OS=Arabidopsis thaliana
GN=ARR3 PE=2 SV=1
Length = 231
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 13/155 (8%)
Query: 34 IPQQEKQPQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDN 93
I + E P Q HVLAVDDSL+DR ++E LLR++S +VT VDSG +ALE+LGL D+
Sbjct: 20 IGELESPPLDSDQ--VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDD 77
Query: 94 LENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSEN 152
+ + + +V+LI+TDYCMPGMTGY+LLK++K S S+K+VPVV+MSSEN
Sbjct: 78 ----------KAAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSEN 127
Query: 153 VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187
V +R+ CLEEGAE+FLLKPV+L+D+++L+ L +
Sbjct: 128 VMTRIDRCLEEGAEDFLLKPVKLADVKRLRSYLTR 162
>sp|Q9ZWS6|ARR6_ARATH Two-component response regulator ARR6 OS=Arabidopsis thaliana
GN=ARR6 PE=1 SV=2
Length = 186
Score = 157 bits (396), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/140 (58%), Positives = 107/140 (76%), Gaps = 11/140 (7%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
HVLAVDDS +DRK +E LLRVSS +VT VDS +AL+YLGL ++E S
Sbjct: 25 LHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGL--DVEEKSVGF------- 75
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
E+ +VNLIMTDY MPGMTGY+LLK++K SS +++VPVV+MSSEN+ R+ CLEEGAE+
Sbjct: 76 -EDLKVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAED 134
Query: 168 FLLKPVRLSDLEKLQPRLLK 187
FLLKPV+LSD+++L+ L+K
Sbjct: 135 FLLKPVKLSDVKRLRDSLMK 154
>sp|Q9ZWS7|ARR7_ARATH Two-component response regulator ARR7 OS=Arabidopsis thaliana
GN=ARR7 PE=1 SV=1
Length = 206
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 112/146 (76%), Gaps = 11/146 (7%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
HVLAVDDS++DRK++E LLR+SS +VT V+SG +AL+YLGL D + SN
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGL-DGGKGASNL-------- 74
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
++ +VNLI+TDY MPG++GYDLLK++K SS +++VPVV+MSSEN+ R+ CL+EGAEE
Sbjct: 75 -KDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEE 133
Query: 168 FLLKPVRLSDLEKLQPRLLKSPNRSC 193
FLLKPV+L+D+++++ ++++ C
Sbjct: 134 FLLKPVKLADVKRIKQLIMRNEAEEC 159
>sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17 OS=Arabidopsis thaliana
GN=ARR17 PE=2 SV=1
Length = 153
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 105/143 (73%), Gaps = 10/143 (6%)
Query: 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPST 104
+E HVLAVDD+LIDRK++E +L++SS +VT ++G +ALEYLGL D P
Sbjct: 16 MEEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGD---------PQQ 66
Query: 105 LSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEE 163
+ +VNLI+TDYCMPGMTG++LLK++K SS K+VPVV++SSEN+P+R+ CL
Sbjct: 67 TDSLTNVMKVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLAS 126
Query: 164 GAEEFLLKPVRLSDLEKLQPRLL 186
GA+ F+ KP++LSD+EKL+ LL
Sbjct: 127 GAQMFMQKPLKLSDVEKLKCHLL 149
>sp|Q9SHC2|ARR16_ARATH Two-component response regulator ARR16 OS=Arabidopsis thaliana
GN=ARR16 PE=1 SV=1
Length = 164
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 108/157 (68%), Gaps = 8/157 (5%)
Query: 31 LEDIPQQEKQPQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGL 90
L D+ + E HVLAVDD+LIDRK++E LL++S +VT ++ +ALEYLGL
Sbjct: 11 LMDVVAYDHHLHHGHDEELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGL 70
Query: 91 IDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMS 149
D N + T + K V+LI+TDYCMPGMTG++LLK++K SS ++VPVV+MS
Sbjct: 71 GDQ---NQHIDALTCNVMK----VSLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMS 123
Query: 150 SENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186
SEN+P+R+ CL GA+ F+ KP++L+D+EKL+ L+
Sbjct: 124 SENIPTRINKCLASGAQMFMQKPLKLADVEKLKCHLM 160
>sp|Q7G8V2|ARR15_ARATH Two-component response regulator ARR15 OS=Arabidopsis thaliana
GN=ARR15 PE=1 SV=1
Length = 206
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 106/141 (75%), Gaps = 11/141 (7%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
HVLAVDDS +DRK++E LL++S+ +VT V+SG +AL+YLGL + N S
Sbjct: 18 LHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGL-----DGDNGSSGL---- 68
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEE 167
++ +VNLI+TDY MPG+TGY+LLK++K SS +++PVV+MSSEN+ R+ C+ EGAEE
Sbjct: 69 -KDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEE 127
Query: 168 FLLKPVRLSDLEKLQPRLLKS 188
FLLKPV+L+D+++L+ +++
Sbjct: 128 FLLKPVKLADVKRLKELIMRG 148
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 24/175 (13%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VLAVDD KILE+LLR Y VT + KALE L ++
Sbjct: 19 VLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELL-------------------REN 59
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++ +L+++D MP M G+ LL+ + + D+PV+++S+ + P V + GA ++LL
Sbjct: 60 KNKFDLVISDVDMPDMDGFKLLELVGLE--MDLPVIMLSAHSDPKYVMKGVTHGACDYLL 117
Query: 171 KPVRLSDLEKLQPRLLKS---PNRSCGNNEDSDNDNKNETSNYKSSTNSAFSKRK 222
KPVR+ +L+ + +++S NR NN D + + NE N ++++
Sbjct: 118 KPVRIEELKNIWQHVVRSRFDKNRGSNNNGDKRDGSGNEGVGNSDQNNGKGNRKR 172
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 81/144 (56%), Gaps = 20/144 (13%)
Query: 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPST 104
Q++T VL VD R+++ LLR Y+V ++G +A YL ++++N+
Sbjct: 58 QKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYL---EDMQNS------- 107
Query: 105 LSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEE 163
++L++T+ MPG++G LL R+ + K++PV++MSS + V CL +
Sbjct: 108 ---------IDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSK 158
Query: 164 GAEEFLLKPVRLSDLEKLQPRLLK 187
GA +FL+KP+R ++L+ L + +
Sbjct: 159 GAVDFLVKPIRKNELKNLWQHVWR 182
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 81/144 (56%), Gaps = 20/144 (13%)
Query: 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPST 104
Q++T VL VD R+++ LLR Y+V ++G +A YL ++++N+
Sbjct: 58 QKKTIKVLLVDSDDSTRQVVSALLRHCMYEVIPAENGQQAWTYL---EDMQNS------- 107
Query: 105 LSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEE 163
++L++T+ MPG++G LL R+ + K++PV++MSS + V CL +
Sbjct: 108 ---------IDLVLTEVVMPGVSGISLLSRIMNHNICKNIPVIMMSSNDAMGTVFKCLSK 158
Query: 164 GAEEFLLKPVRLSDLEKLQPRLLK 187
GA +FL+KP+R ++L+ L + +
Sbjct: 159 GAVDFLVKPIRKNELKNLWQHVWR 182
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 46/197 (23%)
Query: 18 LLENI----PQQE--REGQLEDIPQQEKQPQQQQQ--------------------ETFHV 51
+LEN P++E R G ED+P P + QQ +T V
Sbjct: 24 ILENGHSHKPEEEEWRNGMGEDLPNGHSTPPEPQQTDEQKEHQVQIVRWERFLPVKTLRV 83
Query: 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111
L V++ R+++ LLR Y+V ++G A + L ++L+N+
Sbjct: 84 LLVENDDSTRQVVSALLRKCCYEVIPAENGLHAWQCL---EDLQNH-------------- 126
Query: 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
++L++T+ MP ++G LL ++ KD+PV++MSS + V CL +GA +FL+
Sbjct: 127 --IDLVLTEVVMPRLSGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLV 184
Query: 171 KPVRLSDLEKLQPRLLK 187
KP+R ++L+ L + +
Sbjct: 185 KPIRKNELKNLWQHVWR 201
>sp|Q23917|PDE2_DICDI 3',5'-cyclic-nucleotide phosphodiesterase regA OS=Dictyostelium
discoideum GN=regA PE=1 SV=1
Length = 793
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 21/125 (16%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L DD + RKIL NLL+ Y VT V +G+ A EY+ K
Sbjct: 162 ILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYIN-------------------KG 202
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTM-CLEEGAEEF 168
+ + +L++TD MP +TG+DLL+R+ + +PV++MS V + ++ G ++F
Sbjct: 203 QQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDF 262
Query: 169 LLKPV 173
L KP+
Sbjct: 263 LTKPI 267
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 40/182 (21%)
Query: 27 REGQLEDIPQQEKQPQQQQQ--------------------ETFHVLAVDDSLIDRKILEN 66
R G ED+P P + QQ +T VL V++ R+++
Sbjct: 39 RNGMGEDLPNGHSTPPEPQQTDEQKEHQVRIVRWERFLPVKTLRVLLVENDDSTRQVVSA 98
Query: 67 LLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126
LLR Y+V ++G A + L ++L+N+ ++L++T+ MP +
Sbjct: 99 LLRKCCYEVIPAENGLHAWQCL---EDLQNH----------------IDLVLTEVVMPRL 139
Query: 127 TGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185
+G LL ++ KD+PV++MSS + V CL +GA +FL+KP+R ++L+ L +
Sbjct: 140 SGIGLLSKITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHV 199
Query: 186 LK 187
+
Sbjct: 200 WR 201
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 21/137 (15%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VLAVDD +IL+ LL+ Y VT + ALE L ++
Sbjct: 19 VLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELL-------------------REN 59
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+++ +L+++D MP M G+ LL+ + + D+PV+++S+ + P V ++ GA ++LL
Sbjct: 60 KNKFDLVISDVDMPDMDGFKLLELVGLE--MDLPVIMLSAHSDPKYVMKGVKHGACDYLL 117
Query: 171 KPVRLSDLEKLQPRLLK 187
KPVR+ +L+ + +++
Sbjct: 118 KPVRIEELKNIWQHVVR 134
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL VDD KILE +L+ SY+VT +AL L ++
Sbjct: 13 VLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLL-------------------RER 53
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ +++++D MP M G+ LL+ + + D+PV++MS + SRV ++ GA ++LL
Sbjct: 54 KDGYDIVISDVNMPDMDGFKLLEHVGLE--LDLPVIMMSVDGETSRVMKGVQHGACDYLL 111
Query: 171 KPVRLSDLEKLQPRLLKSPNR------SCGNNEDSDNDNKNETSNY-KSSTNSAFSKRK 222
KP+R+ +L+ + +L+ + CG +D + + +++ + +F K++
Sbjct: 112 KPIRMKELKIIWQHVLRKKLQEVRDIEGCGYEGGADWITRYDEAHFLGGGEDVSFGKKR 170
>sp|P0C0F7|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=rpfC PE=3 SV=2
Length = 726
Score = 65.9 bits (159), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+ +L DD +R +L+ LL + ++V CV+ ++ L+ +
Sbjct: 461 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA------------------ 502
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV---SSWKDVPVVVMSSENVPSRVTMCLEEG 164
E + ++ D MPGM G D+LK+L+V S + PVVV+S++ P + C + G
Sbjct: 503 ---EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAG 559
Query: 165 AEEFLLKPVRLSDL 178
A FL KPV + L
Sbjct: 560 ARAFLAKPVLAAKL 573
>sp|P0C0F6|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpfC PE=1 SV=2
Length = 726
Score = 65.9 bits (159), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 24/134 (17%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+ +L DD +R +L+ LL + ++V CV+ ++ L+ +
Sbjct: 461 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA------------------ 502
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKV---SSWKDVPVVVMSSENVPSRVTMCLEEG 164
E + ++ D MPGM G D+LK+L+V S + PVVV+S++ P + C + G
Sbjct: 503 ---EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAG 559
Query: 165 AEEFLLKPVRLSDL 178
A FL KPV + L
Sbjct: 560 ARAFLAKPVVAAKL 573
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 22/131 (16%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
V+ VDD + I+ +L+ S Y+V VD KAL STL +++
Sbjct: 18 VMVVDDDHVFLDIMSRMLQHSKYRVIAVDDPKKAL-----------------STLKIQRD 60
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
++LI+TDY MPGM G L K++ + ++PV+VMSS+ ++ L GA F+
Sbjct: 61 N--IDLIITDYYMPGMNGLQLKKQI-TQEFGNLPVLVMSSDT--NKEEESLSCGAMGFIP 115
Query: 171 KPVRLSDLEKL 181
KP+ +DL K+
Sbjct: 116 KPIHPTDLTKI 126
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 20/141 (14%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
T VL V++ R I+ LLR SY+V +G +A + L ++N
Sbjct: 77 TIRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNN-------------- 122
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLL-KRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
+++++T+ MP ++G LL K L S +++PV++MSS + V CL +GA
Sbjct: 123 -----HIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAV 177
Query: 167 EFLLKPVRLSDLEKLQPRLLK 187
+FL+KP+R ++L+ L + +
Sbjct: 178 DFLVKPIRKNELKILWQHVWR 198
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 20/141 (14%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
VL V+ R+I+ LLR SY+V V G KA E L
Sbjct: 49 ALRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEML------------------- 89
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K + V+LI+T+ +P ++GY LL ++ K++PV++MS+++ + V C+ +GA
Sbjct: 90 KGKPESVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSTQDSVNTVYKCMLKGAA 149
Query: 167 EFLLKPVRLSDLEKLQPRLLK 187
++L+KP+R ++L L + +
Sbjct: 150 DYLVKPLRRNELRNLWQHVWR 170
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 21/137 (15%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL VDD ILE +LR Y+VT + + AL L +K
Sbjct: 39 VLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLL-------------------RKN 79
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ +++++D MP M G+ LL+ + + D+PV++MS+++ S V + GA ++L+
Sbjct: 80 KHGFDIVISDVHMPDMDGFKLLEHVGLE--MDLPVIMMSADDSKSVVLKGVTHGAVDYLI 137
Query: 171 KPVRLSDLEKLQPRLLK 187
KPVR+ L+ + +++
Sbjct: 138 KPVRMEALKNIWQHVVR 154
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 20/140 (14%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
VL V+ R+I+ LLR Y+V V G A E L K
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVL-------------------K 77
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
++ ++LI+T+ +P ++G+ LL ++ + K++PV++MSS++ V C+ GA +
Sbjct: 78 EKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAAD 137
Query: 168 FLLKPVRLSDLEKLQPRLLK 187
+L+KP+R ++L+ L + +
Sbjct: 138 YLIKPMRKNELKNLWQHVWR 157
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD ILE +L YQVT D AL L ++
Sbjct: 13 ILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTIL-------------------RER 53
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+ +L+++D MPGM GY+LL+++ + D+PV++MS + + V + GA ++L+
Sbjct: 54 KDSFDLVLSDVHMPGMNGYNLLQQVGLLE-MDLPVIMMSVDGRTTTVMTGINHGACDYLI 112
Query: 171 KPVRLSDLEKLQPRLLKSPNRSC 193
KP+R +L+ + +++ R C
Sbjct: 113 KPIRPEELKNIWQHVVR---RKC 132
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 22/134 (16%)
Query: 55 DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRV 114
DDS R I+ LLR Y+V G KA + L K++ +
Sbjct: 51 DDST--RHIICALLRKCGYRVAAASDGVKAWDIL-------------------KEKSFNI 89
Query: 115 NLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
+L++T+ +P M+G+ LL ++ + K++PV++MSS + S V C+ +GA +FL+KP+
Sbjct: 90 DLVLTEVELPLMSGFLLLSTIMEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPI 149
Query: 174 RLSDLEKLQPRLLK 187
R ++L L + +
Sbjct: 150 RKNELRNLWQHVWR 163
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL VDD ILE +L Y+VT + + AL L +K
Sbjct: 30 VLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLL-------------------RKN 70
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
++ +++++D MP M G+ LL+ + + D+PV++MS+++ S V + GA ++L+
Sbjct: 71 KNGFDIVISDVHMPDMDGFKLLEHVGLE--MDLPVIMMSADDSKSVVLKGVTHGAVDYLI 128
Query: 171 KPVRLSDLEKLQPRLLKS-------PNRSCGNNEDSDND------NKNETSNYKSSTN 215
KPVR+ L+ + +++ S G+ ED+ D ++ + N SS N
Sbjct: 129 KPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVN 186
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 20/141 (14%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
+ VL V++ R I+ LL+ SY+VT V LE ++++
Sbjct: 63 SLKVLLVENDDSTRHIVTALLKNCSYEVTAVPD---VLEAWRILED-------------- 105
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKR-LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
E+S ++L++T+ MP +G LL + + + K++PV++MSS + V CL GA
Sbjct: 106 --EKSCIDLVLTEVDMPVHSGTGLLSKIMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAV 163
Query: 167 EFLLKPVRLSDLEKLQPRLLK 187
+FL+KP+R ++L+ L + +
Sbjct: 164 DFLVKPIRKNELKNLWQHVWR 184
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQ---VTCVDSGDKALEYLGLIDNLENNSNASPSTLS 106
+V+ VDD+ + I +L S Y+ V VD KAL STL
Sbjct: 17 NVMVVDDNRVFLDIWSRMLEKSKYREITVIAVDYPKKAL-----------------STL- 58
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K + ++LI+TDY MPGM G L K++ + ++ V+VMSS+ P++ L GA
Sbjct: 59 -KNQRDNIDLIITDYYMPGMNGLQLKKQI-TQEFGNLSVLVMSSD--PNKEEESLSCGAM 114
Query: 167 EFLLKPVRLSDLEKL 181
F+ KP+ +DL K+
Sbjct: 115 GFIPKPIAPTDLPKI 129
>sp|P10577|NTRC_RHIME Nitrogen assimilation regulatory protein OS=Rhizobium meliloti
(strain 1021) GN=ntrC PE=1 SV=2
Length = 484
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L DD R +L L + Y V SNA+ TL
Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYDVRI-------------------TSNAA--TLWRWIA 44
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
+L++TD MP +DLL R+K + D+PV+VMS++N E+GA ++L
Sbjct: 45 AGDGDLVVTDVVMPDENAFDLLPRIK-KARPDLPVLVMSAQNTFMTAIKASEKGAYDYLP 103
Query: 171 KPVRLSDLEKLQPRLLKSPNRSCGNNEDSDNDN 203
KP L++L + R L P R ED D
Sbjct: 104 KPFDLTELIGIIGRALAEPKRRPSKLEDDSQDG 136
>sp|Q04848|NTRC_AZOC5 Nitrogen assimilation regulatory protein NtrC OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=ntrC PE=3 SV=2
Length = 480
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLST 107
T +L DD R +L L + Y+V S + +TL
Sbjct: 3 TGSILVADDDAAIRTVLNQALSRAGYEV---------------------RSCGNAATLWR 41
Query: 108 KKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
+ +L++TD MP +DLL R+K + D+PV+VMS++N E GA E
Sbjct: 42 WVSQGDGDLVITDVVMPDENAFDLLPRIK-KARPDLPVIVMSAQNTFMTAIRASERGAYE 100
Query: 168 FLLKPVRLSDLEKLQPRLLKSPNRS 192
+L KP L +L + R L P ++
Sbjct: 101 YLPKPFDLKELISIVGRALAEPKKA 125
>sp|P28835|YCF27_PORAE Probable transcriptional regulator ycf27 OS=Porphyridium aerugineum
GN=ycf27 PE=3 SV=1
Length = 240
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 25/147 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L +DD R+ILE L + Y V G++AL K+E
Sbjct: 6 ILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIF-------------------KRE 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSS-ENVPSRVTMCLEEGAEEFL 169
NL++ D MP + GY + + L+ S DVP++++++ +V R+T LE GA++++
Sbjct: 47 HP--NLVVLDLMMPKLDGYGVCQELRKES--DVPIIMLTALSDVSDRIT-GLELGADDYI 101
Query: 170 LKPVRLSDLEKLQPRLLKSPNRSCGNN 196
+KP +LE +L+ +++ NN
Sbjct: 102 VKPFSPKELEARIRSVLRRVDKASSNN 128
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 21/110 (19%)
Query: 64 LENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123
L+NL+ SYQVT +SG++A+ +L K + ++L++ D+ M
Sbjct: 54 LKNLMTQYSYQVTKYESGEEAMAFL-------------------MKNKHEIDLVIWDFHM 94
Query: 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV 173
P + G D L + D+PVV+MS E V ++ GA +FL+KPV
Sbjct: 95 PDINGLDALNI--IGKQMDLPVVIMSHEYKKETVMESIKYGACDFLVKPV 142
>sp|Q4UU85|RPFG_XANC8 Cyclic di-GMP phosphodiesterase response regulator RpfG
OS=Xanthomonas campestris pv. campestris (strain 8004)
GN=rpfG PE=1 SV=1
Length = 378
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTK 108
+++ VDD + R +L +++ + ++ D GD P +
Sbjct: 28 LNIVIVDDQMSARTMLRHVIEDIAPELKVYDFGD-------------------PLDALSW 68
Query: 109 KEESRVNLIMTDYCMPGMTGYDLLKRL-KVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167
E RV+L++ DY MPGM G + +RL ++ S +D+P+++++ LE G +
Sbjct: 69 CEAGRVDLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVID 128
Query: 168 FLLKPVR 174
FL+KP+R
Sbjct: 129 FLVKPIR 135
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 21/125 (16%)
Query: 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+VL VD + ++ +++ +YQV+ +KAL +L S K
Sbjct: 35 NVLVVDTNFTTLLNMKQIMKQYAYQVSIETDAEKALAFL----------------TSCKH 78
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
E +N+++ D+ MPG+ G LK ++S D+PVV+MS +N V GA +++
Sbjct: 79 E---INIVIWDFHMPGIDGLQALK--SITSKLDLPVVIMSDDNQTESVMKATFYGACDYV 133
Query: 170 LKPVR 174
+KPV+
Sbjct: 134 VKPVK 138
>sp|A1W0A5|CHEY_CAMJJ Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=cheY PE=3
SV=1
Length = 130
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 20/123 (16%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDDS R+I++N L LG D LE L TK E
Sbjct: 3 LLVVDDSSTMRRIIKN-----------------TLTRLGHDDVLEAEHGVEAWDLLTKNE 45
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ +V ++TD+ MP M G +L+K+++ ++D+P++++++E + V L+ G ++
Sbjct: 46 DVKV--LITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYI 103
Query: 170 LKP 172
+KP
Sbjct: 104 VKP 106
>sp|P0C635|CHEY_CAMJE Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=cheY PE=3
SV=1
Length = 130
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 20/123 (16%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDDS R+I++N L LG D LE L TK E
Sbjct: 3 LLVVDDSSTMRRIIKN-----------------TLTRLGHDDVLEAEHGVEAWDLLTKNE 45
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ +V ++TD+ MP M G +L+K+++ ++D+P++++++E + V L+ G ++
Sbjct: 46 DVKV--LITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYI 103
Query: 170 LKP 172
+KP
Sbjct: 104 VKP 106
>sp|A8FMH1|CHEY_CAMJ8 Chemotaxis protein CheY homolog OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=cheY
PE=3 SV=1
Length = 130
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 20/123 (16%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDDS R+I++N L LG D LE L TK E
Sbjct: 3 LLVVDDSSTMRRIIKN-----------------TLTRLGHDDVLEAEHGVEAWDLLTKNE 45
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169
+ +V ++TD+ MP M G +L+K+++ ++D+P++++++E + V L+ G ++
Sbjct: 46 DVKV--LITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYI 103
Query: 170 LKP 172
+KP
Sbjct: 104 VKP 106
>sp|P48259|YCF27_CYAPA Probable transcriptional regulator ycf27 OS=Cyanophora paradoxa
GN=ycf27 PE=3 SV=1
Length = 239
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 25/138 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD + R+ILE L + Y+V G++AL I LE+
Sbjct: 8 ILVVDDEISIRRILETRLSMIGYEVVTAADGEEALT----IFQLEHP------------- 50
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSS-ENVPSRVTMCLEEGAEEFL 169
NL++ D MP + GY + + L+ S D+P++++++ +V R+T LE GA++++
Sbjct: 51 ----NLVVLDVMMPKLDGYGVCQELRKES--DIPIIMLTALGDVADRIT-GLELGADDYV 103
Query: 170 LKPVRLSDLEKLQPRLLK 187
+KP +LE LL+
Sbjct: 104 VKPFSPKELEARIRSLLR 121
>sp|Q54SK5|DHKM_DICDI Hybrid signal transduction histidine kinase M OS=Dictyostelium
discoideum GN=dhkM PE=3 SV=1
Length = 2388
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L V+D+L++ KI +LR +++V +G A+E + K+
Sbjct: 2263 ILLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERI-------------------KQS 2303
Query: 111 ESRVNLIMTDYCMP---GMTGYDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
S +LI+ D MP G+T L ++ + K +P++ ++++ +CLE G
Sbjct: 2304 HSSFDLILMDIHMPVMDGITCSKLTRKFETEHGLKHLPIIALTADATTGHKNLCLEAGCN 2363
Query: 167 EFLLKPVRLSDLEKLQPRLL 186
EF+ KP+ + L L +L+
Sbjct: 2364 EFMSKPLDYALLISLLKKLV 2383
>sp|Q9TLQ4|YCF27_CYACA Probable transcriptional regulator ycf27 OS=Cyanidium caldarium
GN=ycf27 PE=3 SV=1
Length = 249
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 25/138 (18%)
Query: 43 QQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASP 102
+Q + H+L VDD RKIL+ L + Y V+ +G++AL+
Sbjct: 6 KQNKRQHHLLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIF-------------- 51
Query: 103 STLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSS-ENVPSRVTMCL 161
+T S ++LI+ D MP + GY + + ++ S D+P++++++ E+V +VT L
Sbjct: 52 TTHS-------IDLIILDVMMPKLDGYGVCQEIRKES--DIPIIMLTALEDVLDKVT-GL 101
Query: 162 EEGAEEFLLKPVRLSDLE 179
E GA+++++KP +LE
Sbjct: 102 ELGADDYVIKPFSPRELE 119
>sp|P71403|CHEY_HELPY Chemotaxis protein CheY homolog OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=cheY PE=1 SV=2
Length = 124
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 22/124 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+L VDDS R+I++N L Y+ V + G +A E L ++NA L
Sbjct: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL--------DANADTKVL---- 50
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+TD+ MP M G DL+K+++ S +K++P++++++E + V L+ G +
Sbjct: 51 --------ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNY 102
Query: 169 LLKP 172
++KP
Sbjct: 103 IVKP 106
>sp|Q9ZM64|CHEY_HELPJ Chemotaxis protein CheY homolog OS=Helicobacter pylori (strain J99)
GN=cheY PE=3 SV=1
Length = 124
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 22/124 (17%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109
+L VDDS R+I++N L Y+ V + G +A E L ++NA L
Sbjct: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL--------DANADTKVL---- 50
Query: 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEF 168
+TD+ MP M G DL+K+++ + +K++P++++++E + V L+ G +
Sbjct: 51 --------ITDWNMPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNY 102
Query: 169 LLKP 172
++KP
Sbjct: 103 IVKP 106
>sp|P0A5Z4|MTRA_MYCTU DNA-binding response regulator MtrA OS=Mycobacterium tuberculosis
GN=mtrA PE=1 SV=2
Length = 228
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD ++L +LR + + G +AL T
Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL---------------------TAVR 46
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E R +L++ D +PGM G D+ + L+ S VP+V+++++ V + LE GA+++++
Sbjct: 47 ELRPDLVLLDLMLPGMNGIDVCRVLRADS--GVPIVMLTAKTDTVDVVLGLESGADDYIM 104
Query: 171 KPVR 174
KP +
Sbjct: 105 KPFK 108
>sp|Q93CB8|MTRA_MYCPA DNA-binding response regulator MtrA OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=mtrA
PE=3 SV=2
Length = 225
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD ++L +LR + + G +AL T
Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL---------------------TAVR 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E R +L++ D +PGM G D+ + L+ S VP+V+++++ V + LE GA+++++
Sbjct: 44 ELRPDLVLLDLMLPGMNGIDVCRVLRADS--GVPIVMLTAKTDTVDVVLGLESGADDYIM 101
Query: 171 KPVR 174
KP +
Sbjct: 102 KPFK 105
>sp|P0A5Z5|MTRA_MYCBO DNA-binding response regulator MtrA OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=mtrA PE=3 SV=1
Length = 225
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD ++L +LR + + G +AL T
Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL---------------------TAVR 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E R +L++ D +PGM G D+ + L+ S VP+V+++++ V + LE GA+++++
Sbjct: 44 ELRPDLVLLDLMLPGMNGIDVCRVLRADS--GVPIVMLTAKTDTVDVVLGLESGADDYIM 101
Query: 171 KPVR 174
KP +
Sbjct: 102 KPFK 105
>sp|Q9CCJ2|MTRA_MYCLE DNA-binding response regulator MtrA OS=Mycobacterium leprae (strain
TN) GN=mtrA PE=3 SV=2
Length = 225
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
+L VDD ++L +LR + + G +AL T
Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQAL---------------------TAVR 43
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
E R +L++ D +PGM G D+ + L+ S VP+V+++++ V + LE GA+++++
Sbjct: 44 ELRPDLVLLDLMLPGMNGIDVCRVLRADS--GVPIVMLTAKTDTVDVVLGLESGADDYIM 101
Query: 171 KPVR 174
KP +
Sbjct: 102 KPFK 105
>sp|Q9APD9|ZRAR_KLEOX Transcriptional regulatory protein ZraR OS=Klebsiella oxytoca
GN=zraR PE=3 SV=1
Length = 443
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 25/136 (18%)
Query: 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLS 106
E +L VDD + IL+ LLR Y+V ++G +ALE
Sbjct: 4 EQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALE-------------------- 43
Query: 107 TKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166
K E +L++ D M M G + LK +K + +PV++M++ + L+ GA
Sbjct: 44 -KVREKVFDLVLCDIRMAEMDGIETLKEIKTFN-PSIPVLIMTAYSSVDTAVEALKSGAL 101
Query: 167 EFLLKPVRLSDLEKLQ 182
++L+KP+ D +KLQ
Sbjct: 102 DYLIKPL---DFDKLQ 114
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 21/146 (14%)
Query: 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKE 110
VL +DD ++E+LL SY+VT + +A+ ++ +DN P
Sbjct: 13 VLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI--LDN--------PQI------ 56
Query: 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170
V+L+++D P G +L+ +V+S +P V+M+S + V + GA +FLL
Sbjct: 57 ---VDLVISDAFFPTEDGLLILQ--EVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLL 111
Query: 171 KPVRLSDLEKLQPRLLKSPNRSCGNN 196
KPVR+ +L + + + + NN
Sbjct: 112 KPVRIEELSNIWQHIFRKQMQDHKNN 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,712,179
Number of Sequences: 539616
Number of extensions: 3754481
Number of successful extensions: 65053
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 586
Number of HSP's that attempted gapping in prelim test: 39164
Number of HSP's gapped (non-prelim): 19151
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)