Query 026247
Match_columns 241
No_of_seqs 225 out of 1606
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 1.7E-23 3.8E-28 181.6 17.1 121 49-191 1-121 (229)
2 COG4753 Response regulator con 99.9 2.5E-21 5.4E-26 181.7 14.0 120 48-189 1-123 (475)
3 COG2204 AtoC Response regulato 99.9 7.6E-21 1.6E-25 178.5 16.0 120 48-189 4-123 (464)
4 PF00072 Response_reg: Respons 99.9 2E-20 4.4E-25 141.7 15.1 111 51-183 1-112 (112)
5 COG4566 TtrR Response regulato 99.8 2.6E-20 5.6E-25 155.0 14.1 120 48-189 4-123 (202)
6 COG2197 CitB Response regulato 99.8 4E-19 8.7E-24 152.3 16.2 122 49-192 1-124 (211)
7 KOG0519 Sensory transduction h 99.8 2.5E-19 5.4E-24 179.3 16.8 163 5-187 620-785 (786)
8 COG0784 CheY FOG: CheY-like re 99.8 2.7E-18 5.8E-23 133.1 16.1 119 47-187 4-125 (130)
9 COG4565 CitB Response regulato 99.8 8.2E-19 1.8E-23 148.5 14.0 118 49-188 1-120 (224)
10 COG3437 Response regulator con 99.8 9.8E-19 2.1E-23 157.9 13.9 127 40-187 6-134 (360)
11 PLN03029 type-a response regul 99.8 8.9E-18 1.9E-22 144.8 16.4 141 46-187 6-147 (222)
12 PRK10046 dpiA two-component re 99.8 1.2E-17 2.5E-22 143.3 16.2 119 48-188 4-124 (225)
13 PRK10816 DNA-binding transcrip 99.8 4.4E-17 9.6E-22 137.4 16.8 119 49-189 1-119 (223)
14 PRK10841 hybrid sensory kinase 99.8 3.6E-17 7.8E-22 166.6 19.1 121 46-188 799-919 (924)
15 PRK10529 DNA-binding transcrip 99.7 7.8E-17 1.7E-21 135.9 17.1 118 49-189 2-119 (225)
16 PRK10643 DNA-binding transcrip 99.7 7.8E-17 1.7E-21 134.7 16.9 119 49-189 1-119 (222)
17 PRK09836 DNA-binding transcrip 99.7 8E-17 1.7E-21 136.2 17.0 118 49-188 1-118 (227)
18 COG3706 PleD Response regulato 99.7 3.1E-17 6.7E-22 153.2 15.3 124 47-191 131-255 (435)
19 PRK11173 two-component respons 99.7 8.4E-17 1.8E-21 137.5 16.9 119 48-189 3-121 (237)
20 PRK11107 hybrid sensory histid 99.7 6.3E-17 1.4E-21 163.0 17.9 123 46-189 665-788 (919)
21 PRK09468 ompR osmolarity respo 99.7 1.7E-16 3.6E-21 135.4 17.5 120 48-189 5-124 (239)
22 PRK10336 DNA-binding transcrip 99.7 1.5E-16 3.1E-21 133.0 16.5 119 49-189 1-119 (219)
23 TIGR02154 PhoB phosphate regul 99.7 1.8E-16 3.8E-21 132.7 16.7 120 49-189 3-123 (226)
24 PRK10161 transcriptional regul 99.7 1.9E-16 4.1E-21 134.0 16.9 119 49-188 3-122 (229)
25 PRK10766 DNA-binding transcrip 99.7 1.9E-16 4.2E-21 133.1 16.7 117 49-188 3-119 (221)
26 PRK10840 transcriptional regul 99.7 1.7E-16 3.7E-21 134.7 16.1 122 48-191 3-129 (216)
27 PRK11083 DNA-binding response 99.7 3.4E-16 7.3E-21 131.4 17.2 121 48-190 3-123 (228)
28 PRK15347 two component system 99.7 1.4E-16 3.1E-21 160.6 17.7 120 47-187 689-811 (921)
29 COG3947 Response regulator con 99.7 3.1E-17 6.7E-22 144.6 10.4 116 49-188 1-116 (361)
30 PRK10430 DNA-binding transcrip 99.7 2.7E-16 5.8E-21 135.9 16.2 117 49-185 2-120 (239)
31 PRK10955 DNA-binding transcrip 99.7 4E-16 8.6E-21 131.7 16.8 118 49-190 2-119 (232)
32 PRK11466 hybrid sensory histid 99.7 1.7E-16 3.6E-21 160.4 17.1 122 47-189 680-801 (914)
33 TIGR03787 marine_sort_RR prote 99.7 3.7E-16 8E-21 131.9 16.5 118 50-189 2-121 (227)
34 PRK10701 DNA-binding transcrip 99.7 4.3E-16 9.3E-21 133.2 16.8 118 49-189 2-119 (240)
35 PRK11517 transcriptional regul 99.7 5.8E-16 1.3E-20 130.0 16.8 118 49-189 1-118 (223)
36 CHL00148 orf27 Ycf27; Reviewed 99.7 6.3E-16 1.4E-20 131.2 17.1 120 47-189 5-124 (240)
37 PRK09483 response regulator; P 99.7 6.4E-16 1.4E-20 129.4 16.2 121 48-190 1-123 (217)
38 TIGR01387 cztR_silR_copR heavy 99.7 8.8E-16 1.9E-20 128.0 16.5 118 51-190 1-118 (218)
39 PRK09958 DNA-binding transcrip 99.7 7.8E-16 1.7E-20 127.7 16.0 119 49-189 1-120 (204)
40 PRK13856 two-component respons 99.7 7.5E-16 1.6E-20 132.3 16.4 117 50-189 3-120 (241)
41 TIGR02956 TMAO_torS TMAO reduc 99.7 3.6E-16 7.7E-21 158.6 16.6 121 47-188 701-823 (968)
42 TIGR02875 spore_0_A sporulatio 99.7 1E-15 2.2E-20 133.7 16.6 120 48-188 2-124 (262)
43 PRK11091 aerobic respiration c 99.7 1.3E-15 2.8E-20 151.9 18.1 122 46-189 523-646 (779)
44 PRK10365 transcriptional regul 99.7 9.6E-16 2.1E-20 143.3 15.3 120 47-188 4-123 (441)
45 COG4567 Response regulator con 99.7 1.5E-15 3.3E-20 122.5 14.0 114 50-185 11-124 (182)
46 PRK09935 transcriptional regul 99.7 3.6E-15 7.8E-20 123.6 16.7 120 48-189 3-124 (210)
47 PRK14084 two-component respons 99.7 2E-15 4.3E-20 130.2 15.5 116 49-188 1-118 (246)
48 PRK10360 DNA-binding transcrip 99.7 3.5E-15 7.5E-20 123.0 16.1 116 49-189 2-119 (196)
49 PRK15115 response regulator Gl 99.7 1.8E-15 3.8E-20 142.0 16.0 119 48-188 5-123 (444)
50 PRK09581 pleD response regulat 99.7 8.9E-16 1.9E-20 142.0 13.3 120 46-187 153-273 (457)
51 PRK10923 glnG nitrogen regulat 99.7 2.6E-15 5.7E-20 141.9 16.8 118 48-187 3-120 (469)
52 PRK11361 acetoacetate metaboli 99.7 4.1E-15 8.8E-20 139.8 16.6 119 48-188 4-122 (457)
53 PRK09959 hybrid sensory histid 99.6 3.5E-15 7.7E-20 154.9 16.7 119 47-187 957-1075(1197)
54 PRK10710 DNA-binding transcrip 99.6 1.7E-14 3.6E-19 122.4 17.6 118 49-189 11-128 (240)
55 PRK15479 transcriptional regul 99.6 1.4E-14 3.1E-19 120.9 16.6 119 49-189 1-119 (221)
56 PRK11697 putative two-componen 99.6 7.7E-15 1.7E-19 125.6 15.3 116 48-188 1-118 (238)
57 TIGR02915 PEP_resp_reg putativ 99.6 4.7E-15 1E-19 139.2 15.1 113 51-187 1-118 (445)
58 TIGR01818 ntrC nitrogen regula 99.6 5.6E-15 1.2E-19 139.2 15.3 115 51-187 1-115 (463)
59 PRK09390 fixJ response regulat 99.6 1.6E-14 3.4E-19 117.9 15.1 119 48-188 3-121 (202)
60 PRK10100 DNA-binding transcrip 99.6 1.3E-14 2.8E-19 125.0 14.6 121 45-192 7-131 (216)
61 PRK13435 response regulator; P 99.6 9.3E-14 2E-18 110.3 17.3 119 47-191 4-124 (145)
62 PRK12555 chemotaxis-specific m 99.6 3.3E-14 7.1E-19 129.4 15.6 116 49-187 1-129 (337)
63 PRK09581 pleD response regulat 99.6 5.2E-14 1.1E-18 130.2 16.8 118 49-187 3-121 (457)
64 PRK10610 chemotaxis regulatory 99.6 2.1E-13 4.5E-18 101.9 16.6 120 47-187 4-125 (129)
65 PRK13558 bacterio-opsin activa 99.6 2.5E-14 5.5E-19 140.3 14.9 120 47-188 6-127 (665)
66 PRK11475 DNA-binding transcrip 99.6 4.4E-14 9.6E-19 120.9 13.8 109 61-191 3-118 (207)
67 PRK10403 transcriptional regul 99.6 1.7E-13 3.6E-18 113.3 16.2 119 48-188 6-126 (215)
68 PRK10651 transcriptional regul 99.6 2.1E-13 4.5E-18 113.1 16.5 121 47-189 5-127 (216)
69 PRK15369 two component system 99.6 2.2E-13 4.8E-18 111.6 16.3 120 48-189 3-124 (211)
70 PRK00742 chemotaxis-specific m 99.6 1.3E-13 2.9E-18 126.1 16.3 118 47-187 2-132 (354)
71 PRK15411 rcsA colanic acid cap 99.6 1.3E-13 2.8E-18 117.8 14.7 120 49-191 1-126 (207)
72 COG2201 CheB Chemotaxis respon 99.5 2.7E-13 5.9E-18 123.5 12.6 104 48-174 1-108 (350)
73 PRK09191 two-component respons 99.5 1.5E-12 3.2E-17 112.9 15.8 118 47-189 136-255 (261)
74 PRK13837 two-component VirA-li 99.5 1.4E-12 3.1E-17 131.6 17.2 120 47-189 696-815 (828)
75 cd00156 REC Signal receiver do 99.4 3.9E-12 8.5E-17 90.6 13.4 112 52-185 1-112 (113)
76 COG3707 AmiR Response regulato 99.4 1.1E-12 2.5E-17 109.8 10.7 118 47-187 4-122 (194)
77 PRK13557 histidine kinase; Pro 99.4 1.2E-11 2.7E-16 116.7 17.1 122 47-189 414-536 (540)
78 PRK10693 response regulator of 99.3 1.3E-11 2.8E-16 111.1 12.1 89 77-187 2-91 (303)
79 PRK15029 arginine decarboxylas 99.2 7.7E-11 1.7E-15 117.4 11.6 107 49-178 1-122 (755)
80 COG3279 LytT Response regulato 99.2 1.6E-10 3.5E-15 101.3 11.3 115 48-186 1-117 (244)
81 PRK11107 hybrid sensory histid 98.7 1.8E-07 4E-12 94.6 14.8 117 45-186 533-650 (919)
82 COG3706 PleD Response regulato 98.3 7.4E-07 1.6E-11 83.9 6.1 91 73-187 13-103 (435)
83 PF06490 FleQ: Flagellar regul 98.1 4.6E-05 9.9E-10 58.8 9.6 107 50-185 1-107 (109)
84 smart00448 REC cheY-homologous 98.0 6E-05 1.3E-09 46.0 7.8 55 49-124 1-55 (55)
85 cd02071 MM_CoA_mut_B12_BD meth 97.4 0.0062 1.3E-07 47.6 12.7 111 50-182 1-120 (122)
86 PRK02261 methylaspartate mutas 97.3 0.014 3.1E-07 46.8 14.3 118 48-187 3-135 (137)
87 PF03709 OKR_DC_1_N: Orn/Lys/A 97.0 0.0043 9.3E-08 48.1 7.7 101 62-184 7-110 (115)
88 PRK10618 phosphotransfer inter 96.9 0.0016 3.5E-08 66.9 6.5 51 46-123 687-737 (894)
89 TIGR00640 acid_CoA_mut_C methy 96.9 0.061 1.3E-06 42.8 13.8 116 49-186 3-127 (132)
90 cd02067 B12-binding B12 bindin 96.6 0.04 8.6E-07 42.4 10.8 94 55-171 10-109 (119)
91 TIGR01501 MthylAspMutase methy 96.3 0.16 3.5E-06 40.7 12.5 111 55-187 12-133 (134)
92 COG4999 Uncharacterized domain 95.6 0.079 1.7E-06 41.7 7.7 114 41-180 4-119 (140)
93 COG2185 Sbm Methylmalonyl-CoA 95.5 0.48 1E-05 38.4 12.3 119 46-186 10-137 (143)
94 TIGR03815 CpaE_hom_Actino heli 95.1 0.11 2.3E-06 47.1 8.3 68 112-186 18-86 (322)
95 cd02072 Glm_B12_BD B12 binding 95.1 0.71 1.5E-05 36.7 11.8 106 55-182 10-126 (128)
96 PRK15399 lysine decarboxylase 95.0 0.29 6.3E-06 49.3 11.5 80 49-152 1-86 (713)
97 PRK09426 methylmalonyl-CoA mut 94.9 0.58 1.3E-05 47.3 13.5 120 45-186 579-707 (714)
98 cd02070 corrinoid_protein_B12- 94.6 0.61 1.3E-05 39.4 11.2 99 48-170 82-190 (201)
99 PRK15400 lysine decarboxylase 94.4 0.4 8.7E-06 48.4 11.0 80 49-152 1-86 (714)
100 cd02069 methionine_synthase_B1 94.3 0.42 9.2E-06 41.1 9.7 101 49-171 89-201 (213)
101 PF02310 B12-binding: B12 bind 93.8 1.2 2.7E-05 33.7 10.4 93 55-170 11-110 (121)
102 TIGR02370 pyl_corrinoid methyl 93.3 0.84 1.8E-05 38.6 9.6 97 50-170 86-192 (197)
103 cd04728 ThiG Thiazole synthase 92.5 1.3 2.8E-05 39.0 9.7 110 48-186 93-224 (248)
104 PRK00208 thiG thiazole synthas 91.0 3.2 6.9E-05 36.7 10.4 110 48-186 93-224 (250)
105 cd02068 radical_SAM_B12_BD B12 90.6 3.8 8.2E-05 31.7 9.7 107 59-187 3-112 (127)
106 PRK10558 alpha-dehydro-beta-de 88.9 5.9 0.00013 35.0 10.6 75 110-185 37-113 (256)
107 PRK10128 2-keto-3-deoxy-L-rham 88.8 6.1 0.00013 35.2 10.7 78 110-188 36-114 (267)
108 TIGR03239 GarL 2-dehydro-3-deo 88.6 7.4 0.00016 34.2 11.0 74 110-184 30-105 (249)
109 TIGR02311 HpaI 2,4-dihydroxyhe 88.3 6.3 0.00014 34.6 10.4 76 110-186 30-107 (249)
110 PRK00043 thiE thiamine-phospha 88.2 13 0.00029 30.8 12.1 58 111-170 122-187 (212)
111 COG0512 PabA Anthranilate/para 87.2 2.3 5E-05 36.1 6.6 77 49-150 2-82 (191)
112 PRK00278 trpC indole-3-glycero 87.1 21 0.00045 31.5 13.2 88 60-170 148-239 (260)
113 PF02254 TrkA_N: TrkA-N domain 86.0 11 0.00023 28.2 9.3 93 49-170 22-115 (116)
114 PF01408 GFO_IDH_MocA: Oxidore 85.8 13 0.00027 27.8 9.8 106 49-186 1-110 (120)
115 PRK01130 N-acetylmannosamine-6 84.8 16 0.00035 31.0 10.9 84 64-171 110-202 (221)
116 cd02065 B12-binding_like B12 b 84.5 8.7 0.00019 29.0 8.3 75 55-151 10-89 (125)
117 PRK13111 trpA tryptophan synth 84.2 3.8 8.3E-05 36.3 6.9 60 127-187 75-140 (258)
118 PRK05749 3-deoxy-D-manno-octul 82.6 21 0.00046 33.0 11.6 68 114-187 320-387 (425)
119 TIGR02026 BchE magnesium-proto 82.5 17 0.00036 35.1 11.1 110 57-189 21-139 (497)
120 PF10087 DUF2325: Uncharacteri 82.4 17 0.00038 26.8 10.0 82 50-152 1-85 (97)
121 PRK13566 anthranilate synthase 82.0 4.9 0.00011 40.8 7.5 90 44-160 522-614 (720)
122 PRK12704 phosphodiesterase; Pr 81.8 1.9 4.1E-05 42.1 4.3 45 142-186 248-295 (520)
123 PRK11359 cyclic-di-GMP phospho 81.7 13 0.00027 37.3 10.3 102 63-186 682-795 (799)
124 PRK03958 tRNA 2'-O-methylase; 81.6 18 0.00038 30.4 9.4 86 48-157 31-119 (176)
125 PRK15484 lipopolysaccharide 1, 81.3 41 0.00089 30.8 12.9 67 114-188 277-344 (380)
126 PRK12724 flagellar biosynthesi 81.2 28 0.00061 33.3 11.8 102 48-172 252-369 (432)
127 COG2200 Rtn c-di-GMP phosphodi 80.5 16 0.00034 32.0 9.4 100 62-183 139-250 (256)
128 smart00052 EAL Putative diguan 79.8 9.9 0.00021 31.8 7.7 91 63-175 137-239 (241)
129 PRK05703 flhF flagellar biosyn 78.9 26 0.00057 33.2 10.9 103 47-171 250-366 (424)
130 TIGR00262 trpA tryptophan synt 78.9 8.5 0.00019 33.9 7.2 60 127-187 73-138 (256)
131 PRK05718 keto-hydroxyglutarate 78.8 41 0.0009 28.9 12.1 96 66-184 10-106 (212)
132 TIGR00693 thiE thiamine-phosph 78.7 23 0.00049 29.2 9.4 58 111-170 114-179 (196)
133 cd01948 EAL EAL domain. This d 78.1 8.7 0.00019 32.1 6.8 90 64-175 137-238 (240)
134 PF07688 KaiA: KaiA domain; I 78.0 23 0.00049 31.6 9.3 79 50-151 2-80 (283)
135 cd04729 NanE N-acetylmannosami 78.0 42 0.0009 28.4 11.6 87 60-171 111-206 (219)
136 TIGR03088 stp2 sugar transfera 77.9 24 0.00052 31.6 10.0 65 114-187 273-337 (374)
137 TIGR00566 trpG_papA glutamine 77.8 9.3 0.0002 31.8 6.8 30 51-80 2-31 (188)
138 COG2022 ThiG Uncharacterized e 77.1 19 0.00042 31.7 8.6 99 48-171 100-211 (262)
139 PLN02871 UDP-sulfoquinovose:DA 77.0 35 0.00075 32.2 11.2 66 114-188 332-400 (465)
140 TIGR00007 phosphoribosylformim 76.9 42 0.00092 28.4 10.8 58 111-170 156-217 (230)
141 CHL00162 thiG thiamin biosynth 76.9 49 0.0011 29.5 11.1 113 49-186 108-238 (267)
142 PF05690 ThiG: Thiazole biosyn 76.8 14 0.0003 32.6 7.6 98 49-171 94-204 (247)
143 PRK08385 nicotinate-nucleotide 76.4 34 0.00073 30.8 10.3 95 50-168 156-256 (278)
144 cd00452 KDPG_aldolase KDPG and 76.4 24 0.00051 29.4 8.9 76 70-171 95-171 (190)
145 cd04724 Tryptophan_synthase_al 76.4 13 0.00028 32.3 7.6 58 128-187 64-127 (242)
146 PRK10060 RNase II stability mo 75.9 25 0.00055 35.0 10.4 102 63-186 545-658 (663)
147 PRK07649 para-aminobenzoate/an 75.6 3.6 7.7E-05 34.7 3.7 32 51-82 2-33 (195)
148 PF03328 HpcH_HpaI: HpcH/HpaI 75.4 34 0.00075 29.0 9.8 77 110-186 18-107 (221)
149 TIGR01579 MiaB-like-C MiaB-lik 75.1 31 0.00066 32.3 10.2 96 57-186 9-108 (414)
150 COG3836 HpcH 2,4-dihydroxyhept 74.8 26 0.00056 30.9 8.8 79 110-189 35-114 (255)
151 PRK14974 cell division protein 74.7 39 0.00086 31.1 10.5 101 48-171 168-288 (336)
152 cd03823 GT1_ExpE7_like This fa 74.0 57 0.0012 28.0 11.9 66 114-187 263-328 (359)
153 cd04962 GT1_like_5 This family 73.8 38 0.00082 29.9 10.1 65 114-187 271-335 (371)
154 PRK03708 ppnK inorganic polyph 73.6 53 0.0012 29.3 10.9 108 49-189 1-113 (277)
155 PRK06774 para-aminobenzoate sy 73.2 4.6 0.0001 33.6 3.8 31 51-81 2-32 (191)
156 PLN02591 tryptophan synthase 73.2 14 0.0003 32.6 6.9 59 127-187 65-129 (250)
157 PRK05458 guanosine 5'-monophos 72.8 14 0.00031 33.9 7.1 55 113-169 111-166 (326)
158 KOG4175 Tryptophan synthase al 72.7 10 0.00022 32.7 5.7 40 141-180 94-139 (268)
159 PRK13143 hisH imidazole glycer 72.5 26 0.00057 29.3 8.3 33 49-81 1-33 (200)
160 TIGR01305 GMP_reduct_1 guanosi 72.3 30 0.00066 32.0 9.0 58 112-171 120-178 (343)
161 cd03813 GT1_like_3 This family 71.0 57 0.0012 31.0 11.1 67 113-188 370-442 (475)
162 cd05212 NAD_bind_m-THF_DH_Cycl 71.0 20 0.00043 28.7 6.8 55 45-125 25-83 (140)
163 PRK06731 flhF flagellar biosyn 70.8 77 0.0017 28.2 11.5 105 48-171 103-220 (270)
164 cd00564 TMP_TenI Thiamine mono 70.7 35 0.00076 27.5 8.5 56 112-170 114-177 (196)
165 PF03602 Cons_hypoth95: Conser 70.6 13 0.00029 30.9 6.0 71 48-137 65-139 (183)
166 TIGR01182 eda Entner-Doudoroff 70.2 69 0.0015 27.4 11.5 68 111-183 31-98 (204)
167 cd00331 IGPS Indole-3-glycerol 69.8 66 0.0014 27.0 12.4 80 69-170 118-200 (217)
168 PRK11889 flhF flagellar biosyn 69.7 83 0.0018 30.1 11.5 105 47-170 268-384 (436)
169 CHL00200 trpA tryptophan synth 69.5 18 0.00038 32.2 6.8 58 127-186 78-141 (263)
170 PRK06843 inosine 5-monophospha 69.1 28 0.0006 33.0 8.3 57 111-169 163-220 (404)
171 cd04727 pdxS PdxS is a subunit 68.9 52 0.0011 29.7 9.6 59 127-187 181-246 (283)
172 COG0157 NadC Nicotinate-nucleo 68.8 77 0.0017 28.6 10.6 92 51-168 161-259 (280)
173 PRK10669 putative cation:proto 68.7 87 0.0019 30.5 12.1 72 112-190 480-551 (558)
174 PRK13125 trpA tryptophan synth 68.2 69 0.0015 27.8 10.2 90 60-172 117-215 (244)
175 PRK11840 bifunctional sulfur c 68.1 51 0.0011 30.3 9.5 113 49-186 168-298 (326)
176 PF01596 Methyltransf_3: O-met 68.0 23 0.0005 30.2 7.0 59 47-122 69-130 (205)
177 CHL00101 trpG anthranilate syn 67.3 13 0.00029 30.9 5.4 31 51-81 2-32 (190)
178 PRK09922 UDP-D-galactose:(gluc 67.2 74 0.0016 28.6 10.6 69 114-190 258-326 (359)
179 PRK09490 metH B12-dependent me 66.9 37 0.0008 36.8 9.5 101 48-170 751-863 (1229)
180 PRK15490 Vi polysaccharide bio 66.9 1.1E+02 0.0024 30.4 12.2 102 48-182 429-532 (578)
181 PRK08007 para-aminobenzoate sy 66.9 7.1 0.00015 32.6 3.6 31 51-81 2-32 (187)
182 TIGR00343 pyridoxal 5'-phospha 66.8 53 0.0012 29.7 9.2 59 127-187 184-249 (287)
183 COG4122 Predicted O-methyltran 66.7 27 0.00059 30.2 7.2 55 48-123 84-142 (219)
184 PRK12726 flagellar biosynthesi 66.6 60 0.0013 30.8 9.9 119 48-185 234-365 (407)
185 COG0134 TrpC Indole-3-glycerol 66.6 74 0.0016 28.2 10.0 84 64-171 148-236 (254)
186 PRK00811 spermidine synthase; 65.9 72 0.0016 28.3 10.1 68 48-137 100-179 (283)
187 TIGR03151 enACPred_II putative 65.9 82 0.0018 28.5 10.5 83 64-170 101-189 (307)
188 TIGR02082 metH 5-methyltetrahy 65.8 47 0.001 35.8 10.1 114 49-187 733-858 (1178)
189 PRK14723 flhF flagellar biosyn 65.5 61 0.0013 33.4 10.4 101 49-171 216-332 (767)
190 cd03819 GT1_WavL_like This fam 65.3 93 0.002 27.1 12.0 65 114-186 264-328 (355)
191 PRK03659 glutathione-regulated 65.2 63 0.0014 32.0 10.3 55 112-170 463-517 (601)
192 PLN02335 anthranilate synthase 65.0 9.7 0.00021 32.8 4.1 33 48-80 18-50 (222)
193 PLN02274 inosine-5'-monophosph 65.0 29 0.00063 33.8 7.8 58 110-170 257-316 (505)
194 PRK14098 glycogen synthase; Pr 64.9 46 0.001 32.0 9.2 70 113-187 381-450 (489)
195 cd04723 HisA_HisF Phosphoribos 63.8 41 0.00088 29.0 7.9 54 115-170 161-217 (233)
196 KOG2335 tRNA-dihydrouridine sy 63.6 83 0.0018 29.3 10.0 106 46-170 115-232 (358)
197 PRK15427 colanic acid biosynth 63.5 1.3E+02 0.0027 28.0 13.4 66 114-187 299-369 (406)
198 PRK07896 nicotinate-nucleotide 63.3 38 0.00082 30.6 7.7 69 75-168 203-271 (289)
199 PF00534 Glycos_transf_1: Glyc 63.3 70 0.0015 25.0 9.3 110 46-188 45-158 (172)
200 PRK14722 flhF flagellar biosyn 63.1 77 0.0017 29.7 10.0 89 49-157 168-262 (374)
201 PF04321 RmlD_sub_bind: RmlD s 63.0 14 0.0003 32.8 4.9 55 49-124 1-62 (286)
202 cd03820 GT1_amsD_like This fam 62.6 94 0.002 26.2 12.2 67 114-188 253-319 (348)
203 COG0742 N6-adenine-specific me 62.3 32 0.0007 29.1 6.7 57 48-124 66-125 (187)
204 TIGR01815 TrpE-clade3 anthrani 62.3 28 0.0006 35.5 7.3 37 44-80 512-548 (717)
205 cd03818 GT1_ExpC_like This fam 62.0 1.1E+02 0.0024 27.9 10.8 66 114-188 301-366 (396)
206 PRK03562 glutathione-regulated 61.3 71 0.0015 31.9 9.9 93 48-169 423-516 (621)
207 PRK06895 putative anthranilate 60.9 14 0.0003 30.8 4.2 31 49-79 2-32 (190)
208 PRK05637 anthranilate synthase 60.5 17 0.00038 30.9 4.8 33 49-81 2-34 (208)
209 PRK00748 1-(5-phosphoribosyl)- 60.0 57 0.0012 27.6 8.0 56 113-170 159-219 (233)
210 PF01729 QRPTase_C: Quinolinat 59.9 38 0.00083 28.0 6.6 95 50-169 52-153 (169)
211 PLN02316 synthase/transferase 59.8 1.1E+02 0.0023 32.7 11.2 71 113-188 919-998 (1036)
212 cd01748 GATase1_IGP_Synthase T 59.3 44 0.00094 27.8 7.1 32 51-82 1-32 (198)
213 PRK14329 (dimethylallyl)adenos 59.0 84 0.0018 30.1 9.8 105 49-187 24-140 (467)
214 TIGR03449 mycothiol_MshA UDP-N 58.8 1.4E+02 0.0031 27.0 11.9 66 113-187 302-367 (405)
215 PRK07428 nicotinate-nucleotide 58.7 41 0.00089 30.3 7.1 94 50-168 168-268 (288)
216 TIGR00959 ffh signal recogniti 58.7 1.2E+02 0.0025 29.0 10.5 103 47-170 127-246 (428)
217 TIGR01302 IMP_dehydrog inosine 58.6 43 0.00092 32.0 7.6 56 111-168 234-290 (450)
218 PRK12723 flagellar biosynthesi 58.3 1.6E+02 0.0036 27.6 12.1 117 47-185 205-335 (388)
219 cd04949 GT1_gtfA_like This fam 57.4 1.4E+02 0.003 26.5 10.8 67 114-188 279-345 (372)
220 PF01081 Aldolase: KDPG and KH 57.3 61 0.0013 27.5 7.6 61 119-182 37-97 (196)
221 PRK12727 flagellar biosynthesi 57.2 1.1E+02 0.0024 30.3 10.1 116 48-186 380-508 (559)
222 cd03785 GT1_MurG MurG is an N- 57.2 1.4E+02 0.003 26.3 12.3 66 113-187 252-323 (350)
223 PF04131 NanE: Putative N-acet 57.1 42 0.0009 28.6 6.4 67 72-166 45-114 (192)
224 PRK05670 anthranilate synthase 56.5 15 0.00033 30.4 3.8 30 51-80 2-31 (189)
225 cd03804 GT1_wbaZ_like This fam 56.1 1.4E+02 0.0031 26.3 10.3 66 114-189 262-327 (351)
226 PRK11596 cyclic-di-GMP phospho 56.1 84 0.0018 27.0 8.6 95 66-182 147-252 (255)
227 TIGR00736 nifR3_rel_arch TIM-b 56.0 65 0.0014 28.1 7.7 60 110-170 158-219 (231)
228 TIGR01425 SRP54_euk signal rec 56.0 90 0.002 29.8 9.2 57 111-169 180-245 (429)
229 PF00563 EAL: EAL domain; Int 56.0 6.6 0.00014 32.8 1.5 82 62-166 138-226 (236)
230 TIGR01303 IMP_DH_rel_1 IMP deh 55.8 49 0.0011 32.0 7.6 58 110-169 234-292 (475)
231 PF00218 IGPS: Indole-3-glycer 55.6 1.3E+02 0.0028 26.6 9.7 88 62-171 148-238 (254)
232 TIGR02855 spore_yabG sporulati 55.6 1.6E+02 0.0034 26.6 10.2 96 49-172 105-226 (283)
233 cd03801 GT1_YqgM_like This fam 55.5 1.3E+02 0.0027 25.4 11.4 66 114-188 276-341 (374)
234 KOG1562 Spermidine synthase [A 55.4 65 0.0014 29.5 7.7 64 50-134 147-216 (337)
235 PF02581 TMP-TENI: Thiamine mo 55.3 1.2E+02 0.0025 24.9 8.9 70 75-169 99-175 (180)
236 COG0673 MviM Predicted dehydro 54.8 1.5E+02 0.0033 26.2 10.9 45 142-186 69-115 (342)
237 PRK11829 biofilm formation reg 54.7 1.4E+02 0.003 29.4 10.8 96 62-181 542-651 (660)
238 PRK14326 (dimethylallyl)adenos 54.6 1.7E+02 0.0036 28.5 11.0 99 55-187 24-130 (502)
239 COG0159 TrpA Tryptophan syntha 54.5 52 0.0011 29.4 6.9 51 128-179 81-137 (265)
240 PRK04302 triosephosphate isome 54.4 1.4E+02 0.0029 25.4 12.1 41 130-171 162-202 (223)
241 PRK10307 putative glycosyl tra 53.9 1.8E+02 0.0038 26.6 11.6 43 141-187 330-372 (412)
242 PRK00994 F420-dependent methyl 53.9 1.1E+02 0.0024 27.1 8.6 60 110-172 57-116 (277)
243 cd04951 GT1_WbdM_like This fam 53.9 1.3E+02 0.0029 26.0 9.7 63 114-187 263-325 (360)
244 TIGR00417 speE spermidine synt 53.9 1.5E+02 0.0033 25.9 10.1 55 49-125 97-157 (270)
245 PRK13587 1-(5-phosphoribosyl)- 53.8 49 0.0011 28.6 6.7 55 114-170 163-220 (234)
246 PRK05096 guanosine 5'-monophos 53.7 1E+02 0.0022 28.7 8.8 55 112-168 121-176 (346)
247 cd06346 PBP1_ABC_ligand_bindin 53.7 1.5E+02 0.0033 25.9 11.0 82 50-155 139-231 (312)
248 PRK13609 diacylglycerol glucos 53.5 1.7E+02 0.0037 26.4 11.3 106 48-188 230-338 (380)
249 cd03806 GT1_ALG11_like This fa 53.3 1.9E+02 0.0042 26.9 11.5 111 48-188 273-392 (419)
250 TIGR00064 ftsY signal recognit 53.3 1.5E+02 0.0033 26.2 9.8 104 47-170 99-224 (272)
251 cd03825 GT1_wcfI_like This fam 53.3 62 0.0013 28.3 7.4 75 49-148 1-82 (365)
252 cd01572 QPRTase Quinolinate ph 53.0 1.7E+02 0.0036 26.0 10.1 91 50-168 154-251 (268)
253 PRK05567 inosine 5'-monophosph 52.9 50 0.0011 31.8 7.2 57 111-169 238-295 (486)
254 PRK03522 rumB 23S rRNA methylu 52.9 1.7E+02 0.0037 26.2 10.4 84 49-160 196-283 (315)
255 COG1927 Mtd Coenzyme F420-depe 52.8 1.6E+02 0.0034 25.7 9.4 61 110-172 57-117 (277)
256 PF03808 Glyco_tran_WecB: Glyc 52.8 59 0.0013 26.6 6.7 71 46-136 46-122 (172)
257 TIGR00078 nadC nicotinate-nucl 52.6 1.3E+02 0.0029 26.6 9.3 93 50-170 150-249 (265)
258 PF00290 Trp_syntA: Tryptophan 52.5 25 0.00055 31.2 4.7 53 128-181 74-132 (259)
259 PRK06096 molybdenum transport 52.4 74 0.0016 28.7 7.7 69 75-168 193-261 (284)
260 cd02940 DHPD_FMN Dihydropyrimi 52.4 1.4E+02 0.003 26.6 9.6 41 129-169 239-279 (299)
261 COG3959 Transketolase, N-termi 52.3 32 0.00069 30.1 5.1 57 51-123 174-242 (243)
262 PRK09776 putative diguanylate 52.1 68 0.0015 33.4 8.5 98 62-181 977-1086(1092)
263 PF05582 Peptidase_U57: YabG p 51.8 1.9E+02 0.004 26.2 11.1 95 50-172 107-227 (287)
264 PRK08649 inosine 5-monophospha 51.7 2E+02 0.0042 26.9 10.6 57 110-170 151-214 (368)
265 cd03115 SRP The signal recogni 51.7 91 0.002 24.9 7.6 40 111-152 80-124 (173)
266 COG0313 Predicted methyltransf 51.6 1.8E+02 0.004 26.1 11.0 85 48-152 30-116 (275)
267 cd03422 YedF YedF is a bacteri 51.4 66 0.0014 22.2 5.8 30 50-79 28-57 (69)
268 PRK15320 transcriptional activ 51.2 42 0.00092 29.0 5.5 98 50-171 3-102 (251)
269 cd04726 KGPDC_HPS 3-Keto-L-gul 51.0 1.4E+02 0.003 24.5 11.6 85 62-171 93-186 (202)
270 PRK04180 pyridoxal biosynthesi 51.0 52 0.0011 29.8 6.4 59 127-187 190-255 (293)
271 PLN02591 tryptophan synthase 51.0 1.7E+02 0.0038 25.7 9.7 100 50-172 109-219 (250)
272 cd00381 IMPDH IMPDH: The catal 50.9 73 0.0016 29.0 7.6 58 111-170 104-162 (325)
273 PRK01911 ppnK inorganic polyph 50.9 1.9E+02 0.0041 26.1 11.9 58 113-189 64-121 (292)
274 PRK10551 phage resistance prot 50.8 1.6E+02 0.0035 28.6 10.3 97 64-182 402-510 (518)
275 cd04730 NPD_like 2-Nitropropan 50.6 1.5E+02 0.0033 24.9 11.2 58 112-171 121-185 (236)
276 PRK10867 signal recognition pa 50.6 2.3E+02 0.0049 27.1 11.0 105 48-170 129-247 (433)
277 TIGR00642 mmCoA_mut_beta methy 50.5 1.8E+02 0.004 29.2 10.8 114 44-183 490-613 (619)
278 COG5012 Predicted cobalamin bi 50.4 74 0.0016 27.8 7.0 93 55-171 115-213 (227)
279 COG0167 PyrD Dihydroorotate de 50.3 64 0.0014 29.5 7.0 62 130-191 229-297 (310)
280 PF04131 NanE: Putative N-acet 50.2 1.5E+02 0.0032 25.2 8.7 70 76-170 97-172 (192)
281 TIGR01037 pyrD_sub1_fam dihydr 49.9 1.8E+02 0.004 25.7 11.9 60 130-191 224-289 (300)
282 PRK14330 (dimethylallyl)adenos 49.9 1.1E+02 0.0025 28.8 9.0 74 112-187 36-114 (434)
283 PRK04128 1-(5-phosphoribosyl)- 49.7 69 0.0015 27.6 6.9 52 115-170 158-210 (228)
284 PF09456 RcsC: RcsC Alpha-Beta 49.6 48 0.0011 24.8 5.1 90 51-185 2-91 (92)
285 PLN02366 spermidine synthase 49.6 1.9E+02 0.004 26.3 9.9 70 48-138 115-195 (308)
286 cd03812 GT1_CapH_like This fam 49.6 1.8E+02 0.0038 25.3 10.3 69 114-192 267-335 (358)
287 KOG3040 Predicted sugar phosph 49.5 53 0.0011 28.7 5.9 64 48-130 39-106 (262)
288 cd00532 MGS-like MGS-like doma 49.0 63 0.0014 24.4 5.9 22 57-78 10-31 (112)
289 PRK05848 nicotinate-nucleotide 48.7 2E+02 0.0043 25.7 11.6 93 50-169 154-255 (273)
290 cd00331 IGPS Indole-3-glycerol 48.6 1.1E+02 0.0023 25.8 7.8 69 116-186 48-118 (217)
291 TIGR00597 rad10 DNA repair pro 48.5 80 0.0017 24.5 6.3 42 47-88 66-111 (112)
292 PTZ00314 inosine-5'-monophosph 48.5 94 0.002 30.2 8.3 58 110-169 250-308 (495)
293 TIGR01334 modD putative molybd 48.0 1.6E+02 0.0035 26.4 9.1 68 76-168 193-260 (277)
294 KOG1601 GATA-4/5/6 transcripti 48.0 5.8 0.00013 33.8 -0.1 67 112-178 62-129 (340)
295 TIGR00734 hisAF_rel hisA/hisF 47.9 1.3E+02 0.0029 25.7 8.3 54 115-170 156-212 (221)
296 PRK05742 nicotinate-nucleotide 47.8 1.1E+02 0.0025 27.3 8.1 66 76-169 194-259 (277)
297 PF03060 NMO: Nitronate monoox 47.7 2E+02 0.0043 26.2 9.9 81 66-170 130-218 (330)
298 PRK14099 glycogen synthase; Pr 47.7 1.8E+02 0.0038 27.9 10.0 66 114-185 370-441 (485)
299 PRK00726 murG undecaprenyldiph 47.6 2E+02 0.0044 25.5 12.5 66 113-188 252-324 (357)
300 cd01573 modD_like ModD; Quinol 47.5 1E+02 0.0022 27.4 7.8 70 76-170 188-257 (272)
301 PF09936 Methyltrn_RNA_4: SAM- 47.5 94 0.002 26.3 7.0 101 50-175 44-162 (185)
302 cd04726 KGPDC_HPS 3-Keto-L-gul 47.4 74 0.0016 26.2 6.6 46 126-172 38-85 (202)
303 PRK07455 keto-hydroxyglutarate 47.3 1.2E+02 0.0025 25.3 7.7 52 112-168 124-177 (187)
304 PRK13125 trpA tryptophan synth 47.3 1.9E+02 0.0041 25.0 9.7 71 114-186 31-126 (244)
305 TIGR00089 RNA modification enz 47.2 1.4E+02 0.0031 28.0 9.1 97 57-186 12-113 (429)
306 cd06338 PBP1_ABC_ligand_bindin 46.7 2E+02 0.0044 25.3 11.5 78 49-150 142-230 (345)
307 cd08187 BDH Butanol dehydrogen 46.4 1.6E+02 0.0035 27.2 9.3 63 49-135 29-105 (382)
308 TIGR01859 fruc_bis_ald_ fructo 46.4 1.6E+02 0.0035 26.3 8.9 85 78-186 152-245 (282)
309 PRK07695 transcriptional regul 46.4 1.7E+02 0.0037 24.3 8.8 55 111-168 113-174 (201)
310 PLN02476 O-methyltransferase 46.4 2.2E+02 0.0048 25.5 9.8 58 48-122 143-203 (278)
311 PRK08857 para-aminobenzoate sy 46.2 26 0.00056 29.2 3.6 30 51-80 2-31 (193)
312 PRK05286 dihydroorotate dehydr 46.0 40 0.00087 30.9 5.1 58 130-187 277-341 (344)
313 PF06073 DUF934: Bacterial pro 45.9 1.4E+02 0.003 23.1 7.7 68 114-182 20-89 (110)
314 PRK07764 DNA polymerase III su 45.8 59 0.0013 33.7 6.7 76 111-188 118-194 (824)
315 cd01743 GATase1_Anthranilate_S 45.5 47 0.001 27.2 5.1 31 51-81 1-31 (184)
316 PTZ00314 inosine-5'-monophosph 45.2 2.8E+02 0.006 26.9 10.9 31 141-171 343-373 (495)
317 TIGR01761 thiaz-red thiazoliny 44.9 2.5E+02 0.0055 25.8 10.9 47 141-187 63-113 (343)
318 PRK13561 putative diguanylate 44.9 1.9E+02 0.004 28.5 10.0 99 62-181 537-646 (651)
319 TIGR03061 pip_yhgE_Nterm YhgE/ 44.6 58 0.0013 26.2 5.4 42 46-88 41-92 (164)
320 PF01564 Spermine_synth: Sperm 44.6 64 0.0014 28.1 5.9 68 48-137 100-179 (246)
321 PF06283 ThuA: Trehalose utili 44.2 59 0.0013 27.3 5.6 76 50-149 1-88 (217)
322 cd08185 Fe-ADH1 Iron-containin 44.2 1.6E+02 0.0035 27.1 8.9 64 49-136 26-103 (380)
323 TIGR00138 gidB 16S rRNA methyl 44.0 1.8E+02 0.0039 23.9 10.7 87 48-161 66-154 (181)
324 PRK13695 putative NTPase; Prov 44.0 1.2E+02 0.0026 24.3 7.3 74 112-186 95-172 (174)
325 PRK00771 signal recognition pa 43.8 3E+02 0.0065 26.3 10.9 30 48-77 123-155 (437)
326 PRK14331 (dimethylallyl)adenos 43.7 2.5E+02 0.0055 26.5 10.3 73 113-187 37-117 (437)
327 PRK07259 dihydroorotate dehydr 43.7 2.3E+02 0.0051 25.1 11.3 59 129-189 223-287 (301)
328 cd01840 SGNH_hydrolase_yrhL_li 43.6 1.6E+02 0.0034 23.0 8.4 85 51-151 2-88 (150)
329 COG0352 ThiE Thiamine monophos 43.5 1.7E+02 0.0038 25.1 8.3 67 77-168 110-183 (211)
330 TIGR03499 FlhF flagellar biosy 43.5 82 0.0018 28.0 6.6 54 48-121 224-280 (282)
331 COG2247 LytB Putative cell wal 43.1 1.4E+02 0.0031 27.5 7.9 31 47-77 75-105 (337)
332 PRK09140 2-dehydro-3-deoxy-6-p 43.0 2.1E+02 0.0045 24.3 11.2 62 118-181 38-99 (206)
333 TIGR00262 trpA tryptophan synt 43.0 2.3E+02 0.005 24.8 10.1 43 128-172 186-228 (256)
334 TIGR03590 PseG pseudaminic aci 42.9 2.2E+02 0.0049 24.9 9.3 60 65-151 46-112 (279)
335 PRK00654 glgA glycogen synthas 42.7 2.9E+02 0.0063 26.0 10.6 66 113-187 356-427 (466)
336 PLN02939 transferase, transfer 42.7 2.5E+02 0.0054 29.9 10.6 70 113-187 856-930 (977)
337 PRK04457 spermidine synthase; 42.5 2.3E+02 0.0051 24.7 11.7 70 47-138 89-166 (262)
338 cd06533 Glyco_transf_WecG_TagA 42.4 1E+02 0.0023 25.1 6.6 78 47-149 45-131 (171)
339 cd05844 GT1_like_7 Glycosyltra 42.3 2.4E+02 0.0051 24.7 12.2 53 128-188 284-336 (367)
340 PRK13802 bifunctional indole-3 42.3 3.8E+02 0.0082 27.4 11.6 105 61-187 149-258 (695)
341 KOG1429 dTDP-glucose 4-6-dehyd 42.3 52 0.0011 30.1 5.0 105 46-166 25-135 (350)
342 TIGR00308 TRM1 tRNA(guanine-26 42.2 1.8E+02 0.004 27.1 8.9 91 49-165 70-167 (374)
343 PRK05458 guanosine 5'-monophos 42.2 2.8E+02 0.006 25.5 12.5 98 50-171 113-230 (326)
344 PRK08072 nicotinate-nucleotide 42.1 1.6E+02 0.0034 26.4 8.1 92 50-169 160-258 (277)
345 PLN02949 transferase, transfer 41.8 2.6E+02 0.0057 26.7 10.1 111 47-187 302-421 (463)
346 PRK03612 spermidine synthase; 41.6 2E+02 0.0043 28.0 9.4 68 49-138 322-404 (521)
347 COG3967 DltE Short-chain dehyd 41.5 1.6E+02 0.0034 25.9 7.5 79 50-150 7-86 (245)
348 PRK09522 bifunctional glutamin 41.4 43 0.00092 32.9 4.7 32 49-80 2-33 (531)
349 PF01729 QRPTase_C: Quinolinat 41.4 98 0.0021 25.5 6.3 57 128-186 66-122 (169)
350 PLN02823 spermine synthase 41.3 1.9E+02 0.0041 26.6 8.7 55 48-124 127-187 (336)
351 COG1737 RpiR Transcriptional r 41.1 2.4E+02 0.0053 24.9 9.2 85 50-158 134-220 (281)
352 TIGR00888 guaA_Nterm GMP synth 40.9 76 0.0017 26.0 5.6 29 51-79 1-29 (188)
353 PRK02649 ppnK inorganic polyph 40.8 2.8E+02 0.006 25.1 11.3 58 113-189 68-125 (305)
354 cd02810 DHOD_DHPD_FMN Dihydroo 40.7 2.4E+02 0.0051 24.7 9.1 40 129-168 230-269 (289)
355 cd08179 NADPH_BDH NADPH-depend 40.7 1.8E+02 0.0039 26.8 8.6 63 49-135 24-100 (375)
356 PF00448 SRP54: SRP54-type pro 40.6 1E+02 0.0022 25.8 6.4 105 48-172 29-150 (196)
357 PF13659 Methyltransf_26: Meth 40.6 96 0.0021 22.7 5.7 56 48-124 23-81 (117)
358 PRK11018 hypothetical protein; 40.2 1E+02 0.0023 21.8 5.5 29 50-78 37-65 (78)
359 PRK06543 nicotinate-nucleotide 40.0 2.8E+02 0.0061 24.9 11.5 91 50-169 161-262 (281)
360 PF00497 SBP_bac_3: Bacterial 39.9 1.3E+02 0.0029 24.0 6.9 52 47-121 109-160 (225)
361 PLN02589 caffeoyl-CoA O-methyl 39.9 2.6E+02 0.0056 24.5 9.8 59 48-122 104-165 (247)
362 cd06356 PBP1_Amide_Urea_BP_lik 39.9 2.7E+02 0.0058 24.7 9.9 76 50-148 134-220 (334)
363 PRK14325 (dimethylallyl)adenos 39.9 3E+02 0.0065 26.0 10.2 97 56-186 15-119 (444)
364 cd06279 PBP1_LacI_like_3 Ligan 39.9 1.7E+02 0.0037 24.9 8.0 6 116-121 82-87 (283)
365 PLN02826 dihydroorotate dehydr 39.7 60 0.0013 30.8 5.3 60 129-188 328-394 (409)
366 PRK01033 imidazole glycerol ph 39.7 1.9E+02 0.0042 25.2 8.3 54 115-170 168-225 (258)
367 PRK13181 hisH imidazole glycer 39.7 1.6E+02 0.0035 24.4 7.5 33 51-83 2-34 (199)
368 PRK11572 copper homeostasis pr 39.5 2.2E+02 0.0047 25.2 8.4 92 56-170 98-197 (248)
369 PRK01231 ppnK inorganic polyph 39.3 2.9E+02 0.0062 24.9 11.6 109 50-189 6-119 (295)
370 cd06273 PBP1_GntR_like_1 This 39.2 2.3E+02 0.0049 23.6 8.7 21 128-150 104-124 (268)
371 PRK01581 speE spermidine synth 39.1 2.6E+02 0.0056 26.3 9.3 69 48-138 174-257 (374)
372 cd08176 LPO Lactadehyde:propan 39.1 3.1E+02 0.0068 25.2 9.9 63 49-135 29-104 (377)
373 PRK07114 keto-hydroxyglutarate 38.8 2.6E+02 0.0056 24.2 12.3 63 119-183 44-109 (222)
374 PLN02716 nicotinate-nucleotide 38.7 2.5E+02 0.0055 25.6 8.9 99 50-166 172-285 (308)
375 cd08551 Fe-ADH iron-containing 38.6 2.6E+02 0.0057 25.5 9.3 67 49-136 24-100 (370)
376 PRK01395 V-type ATP synthase s 38.6 1.6E+02 0.0034 22.3 6.5 75 48-149 3-77 (104)
377 COG1091 RfbD dTDP-4-dehydrorha 38.3 80 0.0017 28.4 5.6 58 49-128 1-65 (281)
378 TIGR01163 rpe ribulose-phospha 38.1 2.2E+02 0.0049 23.3 8.2 58 113-171 126-193 (210)
379 PRK07765 para-aminobenzoate sy 37.9 47 0.001 28.3 4.0 32 49-80 1-32 (214)
380 cd06296 PBP1_CatR_like Ligand- 37.6 2.4E+02 0.0052 23.5 8.5 10 113-122 78-87 (270)
381 cd02809 alpha_hydroxyacid_oxid 37.6 3E+02 0.0064 24.5 10.9 63 111-173 191-259 (299)
382 cd06355 PBP1_FmdD_like Peripla 37.6 3E+02 0.0065 24.6 10.2 70 48-140 133-213 (348)
383 cd03794 GT1_wbuB_like This fam 37.5 2.4E+02 0.0051 24.1 8.5 43 141-187 322-364 (394)
384 cd06295 PBP1_CelR Ligand bindi 37.5 2.5E+02 0.0054 23.6 8.6 13 64-76 32-44 (275)
385 COG1908 FrhD Coenzyme F420-red 37.4 86 0.0019 24.8 4.9 33 141-173 28-62 (132)
386 PRK06015 keto-hydroxyglutarate 37.3 2.6E+02 0.0057 23.8 10.8 86 75-183 9-94 (201)
387 PF02662 FlpD: Methyl-viologen 37.2 73 0.0016 24.8 4.6 43 129-171 15-59 (124)
388 PLN02781 Probable caffeoyl-CoA 37.2 1.8E+02 0.004 24.9 7.6 58 48-122 93-153 (234)
389 PRK14607 bifunctional glutamin 37.0 50 0.0011 32.3 4.4 29 50-78 1-30 (534)
390 PRK06106 nicotinate-nucleotide 36.8 2.8E+02 0.006 25.0 8.8 65 76-168 199-263 (281)
391 PF14606 Lipase_GDSL_3: GDSL-l 36.7 31 0.00067 28.9 2.6 40 110-151 56-102 (178)
392 PRK04338 N(2),N(2)-dimethylgua 36.6 3E+02 0.0065 25.7 9.4 78 49-154 82-162 (382)
393 cd01524 RHOD_Pyr_redox Member 36.5 1.2E+02 0.0027 21.3 5.5 36 50-85 53-88 (90)
394 KOG2550 IMP dehydrogenase/GMP 36.5 1.1E+02 0.0023 29.4 6.3 57 110-168 260-317 (503)
395 cd08189 Fe-ADH5 Iron-containin 36.5 3.4E+02 0.0074 24.9 9.8 63 49-135 27-102 (374)
396 TIGR01588 citE citrate lyase, 36.5 3E+02 0.0065 24.5 9.1 75 110-184 21-106 (288)
397 TIGR02095 glgA glycogen/starch 36.4 3.1E+02 0.0067 25.8 9.7 65 114-187 366-436 (473)
398 TIGR01304 IMP_DH_rel_2 IMP deh 36.4 3.6E+02 0.0079 25.2 10.7 56 110-169 152-214 (369)
399 cd04740 DHOD_1B_like Dihydroor 36.3 1.1E+02 0.0023 27.1 6.2 59 129-189 220-284 (296)
400 PRK05567 inosine 5'-monophosph 36.2 4E+02 0.0087 25.6 12.2 42 129-170 317-359 (486)
401 PRK14076 pnk inorganic polypho 36.1 3E+02 0.0065 27.2 9.7 58 113-189 348-405 (569)
402 cd04722 TIM_phosphate_binding 36.1 2.1E+02 0.0046 22.4 8.9 57 112-170 135-198 (200)
403 PF00977 His_biosynth: Histidi 36.0 2E+02 0.0043 24.6 7.6 56 113-170 161-219 (229)
404 PRK06559 nicotinate-nucleotide 36.0 3.3E+02 0.0072 24.6 9.7 88 51-166 170-264 (290)
405 PRK06552 keto-hydroxyglutarate 36.0 2.8E+02 0.006 23.7 9.0 78 64-168 101-180 (213)
406 PRK14721 flhF flagellar biosyn 35.9 3.4E+02 0.0074 25.8 9.7 100 64-185 240-349 (420)
407 cd06318 PBP1_ABC_sugar_binding 35.9 2.7E+02 0.0058 23.5 8.5 65 62-149 19-87 (282)
408 TIGR01452 PGP_euk phosphoglyco 35.7 1.3E+02 0.0029 26.3 6.7 56 114-174 2-69 (279)
409 PRK02506 dihydroorotate dehydr 35.7 76 0.0016 28.7 5.2 59 132-190 231-296 (310)
410 PRK07807 inosine 5-monophospha 35.6 98 0.0021 30.0 6.1 57 111-169 237-294 (479)
411 cd08182 HEPD Hydroxyethylphosp 35.5 3.4E+02 0.0073 24.8 9.5 64 49-136 24-97 (367)
412 PRK13141 hisH imidazole glycer 35.5 1.9E+02 0.0042 24.0 7.4 32 50-81 1-32 (205)
413 cd03423 SirA SirA (also known 35.5 1.1E+02 0.0024 21.0 4.9 30 50-79 28-57 (69)
414 cd04731 HisF The cyclase subun 35.4 2.5E+02 0.0055 23.9 8.2 69 79-170 27-99 (243)
415 PRK02155 ppnK NAD(+)/NADH kina 35.3 3.3E+02 0.0072 24.4 11.9 109 50-189 7-120 (291)
416 cd06292 PBP1_LacI_like_10 Liga 35.3 2.2E+02 0.0047 23.9 7.8 10 114-123 84-93 (273)
417 COG0118 HisH Glutamine amidotr 35.3 73 0.0016 27.4 4.6 38 48-85 1-38 (204)
418 PRK14569 D-alanyl-alanine synt 35.1 1.4E+02 0.0031 26.4 6.8 42 59-121 22-64 (296)
419 cd06310 PBP1_ABC_sugar_binding 35.0 2.7E+02 0.0059 23.3 8.6 71 57-150 11-90 (273)
420 COG0621 MiaB 2-methylthioadeni 34.9 1.8E+02 0.004 27.9 7.7 75 113-189 40-118 (437)
421 PRK03372 ppnK inorganic polyph 34.8 3.5E+02 0.0076 24.5 12.0 58 113-189 72-129 (306)
422 PF01976 DUF116: Protein of un 34.7 69 0.0015 26.2 4.3 26 63-88 77-102 (158)
423 PF10672 Methyltrans_SAM: S-ad 34.5 1.6E+02 0.0035 26.5 7.0 53 49-121 147-203 (286)
424 KOG1203 Predicted dehydrogenas 34.5 2.3E+02 0.0051 26.9 8.3 75 43-138 74-149 (411)
425 cd01424 MGS_CPS_II Methylglyox 34.4 1.9E+02 0.0042 21.4 9.2 25 55-79 9-33 (110)
426 cd03420 SirA_RHOD_Pry_redox Si 34.0 1.4E+02 0.0031 20.4 5.3 30 50-79 28-57 (69)
427 cd01568 QPRTase_NadC Quinolina 33.9 1.8E+02 0.0039 25.8 7.2 91 50-168 160-252 (269)
428 PRK06552 keto-hydroxyglutarate 33.9 3E+02 0.0065 23.5 12.6 95 66-182 8-105 (213)
429 cd05014 SIS_Kpsf KpsF-like pro 33.9 1.9E+02 0.004 21.6 6.5 88 56-172 10-99 (128)
430 PRK05282 (alpha)-aspartyl dipe 33.9 2.8E+02 0.0061 24.1 8.2 63 48-137 31-99 (233)
431 PF08415 NRPS: Nonribosomal pe 33.8 55 0.0012 21.8 3.0 29 125-153 3-34 (58)
432 cd01844 SGNH_hydrolase_like_6 33.8 95 0.0021 24.8 5.1 42 110-152 54-103 (177)
433 PRK09860 putative alcohol dehy 33.7 3.7E+02 0.008 24.9 9.6 64 49-136 32-108 (383)
434 cd08194 Fe-ADH6 Iron-containin 33.4 3.9E+02 0.0084 24.6 9.7 64 49-136 24-100 (375)
435 PRK04148 hypothetical protein; 33.4 1.2E+02 0.0026 24.2 5.4 94 48-177 17-114 (134)
436 PF05768 DUF836: Glutaredoxin- 33.4 1E+02 0.0023 21.7 4.6 56 110-182 25-80 (81)
437 TIGR00735 hisF imidazoleglycer 33.2 3.2E+02 0.007 23.6 10.3 51 129-181 188-245 (254)
438 PRK11557 putative DNA-binding 33.1 3.2E+02 0.007 23.6 10.1 84 50-157 130-217 (278)
439 PRK13146 hisH imidazole glycer 32.8 1.3E+02 0.0028 25.4 5.9 36 48-83 1-38 (209)
440 PLN02775 Probable dihydrodipic 32.6 3.3E+02 0.0071 24.6 8.6 61 111-176 77-139 (286)
441 PRK01372 ddl D-alanine--D-alan 32.5 1E+02 0.0022 27.1 5.4 40 60-120 24-63 (304)
442 PF01990 ATP-synt_F: ATP synth 32.3 1.9E+02 0.004 21.1 6.0 64 66-149 11-75 (95)
443 cd01572 QPRTase Quinolinate ph 32.2 1.6E+02 0.0034 26.2 6.5 53 131-185 171-223 (268)
444 COG0157 NadC Nicotinate-nucleo 32.1 2.1E+02 0.0045 25.8 7.2 71 113-185 157-229 (280)
445 cd03114 ArgK-like The function 32.0 1.8E+02 0.004 23.0 6.3 35 111-151 89-123 (148)
446 TIGR01459 HAD-SF-IIA-hyp4 HAD- 32.0 1.7E+02 0.0036 25.0 6.6 53 112-167 6-67 (242)
447 PLN02460 indole-3-glycerol-pho 31.9 4.2E+02 0.0091 24.6 10.4 88 63-171 221-317 (338)
448 PRK07428 nicotinate-nucleotide 31.9 2.2E+02 0.0047 25.7 7.4 55 129-185 183-237 (288)
449 cd03799 GT1_amsK_like This is 31.7 3.4E+02 0.0073 23.4 10.5 67 114-188 256-327 (355)
450 COG2519 GCD14 tRNA(1-methylade 31.6 2.7E+02 0.0059 24.8 7.7 75 50-152 121-198 (256)
451 cd04824 eu_ALAD_PBGS_cysteine_ 31.6 1.7E+02 0.0036 26.9 6.5 52 112-167 237-288 (320)
452 cd03791 GT1_Glycogen_synthase_ 31.4 3.3E+02 0.0071 25.4 8.9 65 114-187 371-441 (476)
453 COG2061 ACT-domain-containing 31.2 2.7E+02 0.0058 23.0 7.0 57 52-129 54-129 (170)
454 cd04741 DHOD_1A_like Dihydroor 31.2 1.3E+02 0.0028 26.9 5.8 39 130-168 231-269 (294)
455 PRK09016 quinolinate phosphori 31.1 4E+02 0.0086 24.2 8.9 91 50-168 181-277 (296)
456 cd06284 PBP1_LacI_like_6 Ligan 31.1 2.8E+02 0.0061 22.9 7.8 21 128-150 103-123 (267)
457 TIGR02149 glgA_Coryne glycogen 31.1 3.8E+02 0.0082 23.8 12.0 67 113-188 280-352 (388)
458 PRK06806 fructose-bisphosphate 31.0 2.9E+02 0.0062 24.7 8.0 86 78-186 152-245 (281)
459 CHL00188 hisH imidazole glycer 31.0 2.5E+02 0.0054 23.8 7.4 34 49-82 2-35 (210)
460 PF00478 IMPDH: IMP dehydrogen 31.0 1.3E+02 0.0029 28.0 6.0 59 111-171 118-177 (352)
461 PRK06106 nicotinate-nucleotide 31.0 2.3E+02 0.005 25.5 7.4 55 129-185 181-235 (281)
462 PRK07896 nicotinate-nucleotide 30.8 2.1E+02 0.0046 25.8 7.1 54 129-185 187-240 (289)
463 PRK13397 3-deoxy-7-phosphohept 30.6 2E+02 0.0044 25.4 6.8 59 111-175 148-224 (250)
464 cd03808 GT1_cap1E_like This fa 30.5 3.3E+02 0.0071 22.9 10.8 66 114-188 264-329 (359)
465 cd06358 PBP1_NHase Type I peri 30.5 3.8E+02 0.0081 23.6 9.4 78 49-150 133-221 (333)
466 TIGR03704 PrmC_rel_meth putati 30.4 3.6E+02 0.0078 23.3 10.9 97 48-166 110-234 (251)
467 cd04737 LOX_like_FMN L-Lactate 30.4 4.4E+02 0.0096 24.4 10.3 90 62-173 211-308 (351)
468 TIGR01163 rpe ribulose-phospha 30.3 3E+02 0.0066 22.5 9.3 57 127-185 43-100 (210)
469 PF03932 CutC: CutC family; I 30.3 2.4E+02 0.0053 24.0 7.1 93 55-169 96-197 (201)
470 PRK10416 signal recognition pa 30.3 4.2E+02 0.0091 24.0 10.8 32 47-78 141-175 (318)
471 PLN02275 transferase, transfer 30.2 4.2E+02 0.009 24.0 12.5 106 47-186 260-371 (371)
472 cd01836 FeeA_FeeB_like SGNH_hy 30.2 2.8E+02 0.0062 22.1 8.7 40 111-151 65-115 (191)
473 KOG0781 Signal recognition par 30.2 1.3E+02 0.0029 29.4 5.9 56 46-122 404-475 (587)
474 cd03807 GT1_WbnK_like This fam 30.0 3.4E+02 0.0074 22.9 10.7 64 114-188 269-332 (365)
475 PRK09016 quinolinate phosphori 29.9 2.1E+02 0.0045 26.0 6.9 54 129-185 196-249 (296)
476 cd06294 PBP1_ycjW_transcriptio 29.5 3.3E+02 0.0071 22.6 8.2 23 128-152 110-132 (270)
477 cd06324 PBP1_ABC_sugar_binding 29.3 3.6E+02 0.0079 23.4 8.4 66 62-150 20-90 (305)
478 PRK10415 tRNA-dihydrouridine s 29.3 4.3E+02 0.0094 23.9 9.4 97 53-169 114-222 (321)
479 PRK06978 nicotinate-nucleotide 29.3 3.4E+02 0.0075 24.6 8.2 91 50-169 178-274 (294)
480 TIGR00479 rumA 23S rRNA (uraci 29.3 4.7E+02 0.01 24.4 9.6 69 49-137 315-385 (431)
481 PRK04128 1-(5-phosphoribosyl)- 29.1 3.7E+02 0.008 23.1 9.3 56 114-171 43-102 (228)
482 TIGR01133 murG undecaprenyldip 29.1 3.9E+02 0.0085 23.3 11.7 67 113-188 250-321 (348)
483 PRK07107 inosine 5-monophospha 29.1 3.5E+02 0.0076 26.3 8.8 102 47-170 253-380 (502)
484 cd06282 PBP1_GntR_like_2 Ligan 29.0 3.3E+02 0.0072 22.5 9.2 6 70-75 27-32 (266)
485 TIGR02085 meth_trns_rumB 23S r 28.9 4.7E+02 0.01 24.2 11.5 93 49-171 256-352 (374)
486 cd06298 PBP1_CcpA_like Ligand- 28.7 3.4E+02 0.0073 22.5 8.2 20 128-149 104-123 (268)
487 PF10237 N6-adenineMlase: Prob 28.6 88 0.0019 25.7 4.0 61 111-171 84-145 (162)
488 PLN02778 3,5-epimerase/4-reduc 28.6 2.4E+02 0.0053 24.8 7.2 33 45-77 6-38 (298)
489 COG2265 TrmA SAM-dependent met 28.5 5.3E+02 0.011 24.6 10.0 95 48-168 315-413 (432)
490 cd02922 FCB2_FMN Flavocytochro 28.5 4.7E+02 0.01 24.1 9.2 40 129-171 202-241 (344)
491 cd01575 PBP1_GntR Ligand-bindi 28.5 3.4E+02 0.0074 22.4 8.6 12 176-187 162-173 (268)
492 PF01993 MTD: methylene-5,6,7, 28.4 1.3E+02 0.0027 26.8 5.0 62 110-174 56-117 (276)
493 PF06925 MGDG_synth: Monogalac 28.4 2.7E+02 0.0058 22.3 6.9 56 110-171 86-144 (169)
494 PRK02083 imidazole glycerol ph 28.3 3.9E+02 0.0084 23.0 10.1 70 111-182 164-244 (253)
495 PF02887 PK_C: Pyruvate kinase 28.2 63 0.0014 24.5 2.9 66 114-186 17-84 (117)
496 PF04672 Methyltransf_19: S-ad 28.1 2E+02 0.0043 25.7 6.4 87 46-149 93-189 (267)
497 PLN02274 inosine-5'-monophosph 28.0 5.7E+02 0.012 24.9 12.4 41 128-170 339-379 (505)
498 PRK00025 lpxB lipid-A-disaccha 27.9 4.4E+02 0.0096 23.5 11.7 24 165-188 318-341 (380)
499 cd08563 GDPD_TtGDE_like Glycer 27.9 3.7E+02 0.0079 22.6 8.4 38 129-170 190-227 (230)
500 PRK03957 V-type ATP synthase s 27.9 2.6E+02 0.0056 20.8 8.4 70 49-148 1-71 (100)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.91 E-value=1.7e-23 Score=181.56 Aligned_cols=121 Identities=26% Similarity=0.467 Sum_probs=113.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+...|+..||+|.++.++.+|++.+ ... ||+||+|++||++||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~---------------------~~~-~dlviLD~~lP~~dG 58 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAA---------------------REQ-PDLVLLDLMLPDLDG 58 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hcC-CCEEEEECCCCCCCH
Confidence 4899999999999999999999999999999999999998 556 999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
++++++||......+|||++|+.++......++++||||||.|||++.+|...++.++++...
T Consensus 59 ~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 59 LELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred HHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999995455678999999999999999999999999999999999999999999987643
No 2
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.86 E-value=2.5e-21 Score=181.66 Aligned_cols=120 Identities=29% Similarity=0.511 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHh--hcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLR--VSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~--~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+++||||||++.+|+.|+.++. ..|++|+ +|.||.+|++++ .+..||+||+|+.||
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli---------------------~e~~pDiviTDI~MP 59 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELI---------------------QETQPDIVITDINMP 59 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHH---------------------HhcCCCEEEEecCCC
Confidence 4689999999999999999996 4688765 799999999999 788999999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|||+++++.++. ..|++.+|++|++++-+++.+|++.|+.|||.||++.++|..++.++....
T Consensus 60 ~mdGLdLI~~ike-~~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 60 GMDGLDLIKAIKE-QSPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred CCcHHHHHHHHHH-hCCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 9999999999995 458999999999999999999999999999999999999999998887543
No 3
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.86 E-value=7.6e-21 Score=178.52 Aligned_cols=120 Identities=37% Similarity=0.529 Sum_probs=112.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||+..+|..+...|+..||.|..+.++.+|++++ ....||+||+|+.||++|
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i---------------------~~~~~~lvl~Di~mp~~~ 62 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEAL---------------------SESPFDLVLLDIRMPGMD 62 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH---------------------hcCCCCEEEEecCCCCCc
Confidence 34799999999999999999999999999999999999999 344799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++.. .+.+|||++|+|++.+.+.+|++.||.|||.|||+.+.|...+.+++...
T Consensus 63 Gl~ll~~i~~~-~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 63 GLELLKEIKSR-DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred hHHHHHHHHhh-CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 99999999954 48999999999999999999999999999999999999999999998753
No 4
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.86 E-value=2e-20 Score=141.68 Aligned_cols=111 Identities=32% Similarity=0.566 Sum_probs=104.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
||||||++..+..++.+|+..|+ .|..+.++.++++.+ ....||+||+|+.||+++|+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~d~iiid~~~~~~~~~ 59 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELL---------------------KKHPPDLIIIDLELPDGDGL 59 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH---------------------HHSTESEEEEESSSSSSBHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHh---------------------cccCceEEEEEeeecccccc
Confidence 79999999999999999999999 999999999999999 56679999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHH
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
+++++|+... +.+|+|++|++.+.....+++++|+++||.||++.++|...++
T Consensus 60 ~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 60 ELLEQIRQIN-PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHHHHHT-TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cccccccccc-ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999655 8999999999999999999999999999999999999988764
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.85 E-value=2.6e-20 Score=154.99 Aligned_cols=120 Identities=29% Similarity=0.385 Sum_probs=111.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..-|.|||||..+|..+..+|...||++.++.++.+.+... ....|-|+|+|+.||+|+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~---------------------~~~~pGclllDvrMPg~s 62 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA---------------------PLDRPGCLLLDVRMPGMS 62 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc---------------------cCCCCCeEEEecCCCCCc
Confidence 45699999999999999999999999999999999999875 566799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|.++..+|... ....|||++|+|++-....++++.||.|||.|||+.+.|.+++.+.+...
T Consensus 63 Glelq~~L~~~-~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 63 GLELQDRLAER-GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred hHHHHHHHHhc-CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999854 46899999999999999999999999999999999999999999998653
No 6
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=4e-19 Score=152.35 Aligned_cols=122 Identities=30% Similarity=0.474 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSS-YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g-~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++|+|+||++.++..+..+|...+ ++|. .+.++.++++.+ ....||+||+|+.||++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~---------------------~~~~pdvvl~Dl~mP~~ 59 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA---------------------RELKPDVVLLDLSMPGM 59 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh---------------------hhcCCCEEEEcCCCCCC
Confidence 479999999999999999998665 7765 578899999997 67889999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
+|++++++|+ ..+++++||++|++.+..++.+++++||++|+.|..+.++|..+++.++.+....
T Consensus 60 ~G~e~~~~l~-~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~ 124 (211)
T COG2197 60 DGLEALKQLR-ARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYL 124 (211)
T ss_pred ChHHHHHHHH-HHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEe
Confidence 9999999999 5568999999999999999999999999999999999999999999999876443
No 7
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.82 E-value=2.5e-19 Score=179.30 Aligned_cols=163 Identities=26% Similarity=0.401 Sum_probs=130.6
Q ss_pred CccccCchHHHHHHHhcCCcccccCCCCCCCcccCCc---ccccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 5 PQVECIPQQEKQQLLENIPQQEREGQLEDIPQQEKQP---QQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
|.....|....+.+..+.-..+...+--...+.+... .+....+.+|||||||..++.....+|+.+|.+++++.+|
T Consensus 620 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg 699 (786)
T KOG0519|consen 620 PSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSG 699 (786)
T ss_pred cccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCc
Confidence 4444455656666666655555442211122222211 3444567899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHH
Q 026247 82 DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCL 161 (241)
Q Consensus 82 ~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~ 161 (241)
.+|++.+. ....||+|+||++||.|||+++.++||......+|||++|++.......+|+
T Consensus 700 ~e~l~~~~--------------------~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvAlTa~~~~~~~~~c~ 759 (786)
T KOG0519|consen 700 QEALDKLK--------------------PPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVALTADADPSTEEECL 759 (786)
T ss_pred HHHHHhcC--------------------CCCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCEEEEecCCcHHHHHHHH
Confidence 99999982 3678999999999999999999999997644689999999999999999999
Q ss_pred HcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 162 EEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 162 ~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+.|+|+||.|||+...|...+.+.+.
T Consensus 760 ~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 760 EVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred HhCCceEEcccccHHHHHHHHHHHhc
Confidence 99999999999999999999888763
No 8
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.80 E-value=2.7e-18 Score=133.11 Aligned_cols=119 Identities=35% Similarity=0.602 Sum_probs=104.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHH-HHHHHHhhhcccccCCCCCCCcccccccCC-CccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGD-KALEYLGLIDNLENNSNASPSTLSTKKEES-RVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~-eal~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DlVllD~~mp 124 (241)
...+||+|||++..+..+..+|...|+.+..+.++. +|++.+ ... .||+|++|+.||
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~---------------------~~~~~~dlii~D~~mp 62 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELL---------------------RELPQPDLILLDINMP 62 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHH---------------------HhCCCCCEEEEeCCCC
Confidence 457999999999999999999999999999999996 999998 455 599999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHH-HHHHHHHHhc
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSD-LEKLQPRLLK 187 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~-L~~~i~~~l~ 187 (241)
+++|+++++++|.. .+.+|+|++|++........++..|+++|+.||+...+ |...+.+++.
T Consensus 63 ~~~G~~~~~~l~~~-~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 63 GMDGIELLRRLRAR-GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred CCCHHHHHHHHHhC-CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 99999999999954 46788889999988887778899999999999977777 6777776553
No 9
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=8.2e-19 Score=148.50 Aligned_cols=118 Identities=23% Similarity=0.396 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-cCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRV-SSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~-~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++|||||||+.+.++-+.+++. .||.+. ++.++++|...+ ....|||||+|+-||+.
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i---------------------~~~~pDLILLDiYmPd~ 59 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMII---------------------EEFKPDLILLDIYMPDG 59 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHH---------------------HhhCCCEEEEeeccCCC
Confidence 5799999999999999999976 478776 689999999999 56678999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|++++..+|+. +..+-||++|+-.+.+.+.+++..|+.|||.|||..+.|..++.++.+.
T Consensus 60 ~Gi~lL~~ir~~-~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~ 120 (224)
T COG4565 60 NGIELLPELRSQ-HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQK 120 (224)
T ss_pred ccHHHHHHHHhc-CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHH
Confidence 999999999954 4677899999999999999999999999999999999999999888754
No 10
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.79 E-value=9.8e-19 Score=157.87 Aligned_cols=127 Identities=31% Similarity=0.514 Sum_probs=113.6
Q ss_pred CcccccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 40 QPQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 40 ~~~~~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
+........++||+|||++.++..+..+|+..||.|..|.+|++++++. ....+|+||+
T Consensus 6 ~~~~~~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~---------------------~~~~~dlvll 64 (360)
T COG3437 6 QGKNEPDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLL---------------------QEEPPDLVLL 64 (360)
T ss_pred CCCCCCcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHh---------------------cccCCceEEe
Confidence 3444455678999999999999999999999999999999999999988 5566999999
Q ss_pred eCCCCCCCHHHHHHHHhh-c-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 120 DYCMPGMTGYDLLKRLKV-S-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 120 D~~mp~~~G~el~~~lr~-~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|++||+|+|++++.+|+. . ....+||+++|++++.+...+++..|+++||.||+++.+|...+...+.
T Consensus 65 D~~mp~mdg~ev~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q 134 (360)
T COG3437 65 DVRMPEMDGAEVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134 (360)
T ss_pred eccCCCccHHHHHHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999996 3 4467899999999999999999999999999999999999888865553
No 11
>PLN03029 type-a response regulator protein; Provisional
Probab=99.78 E-value=8.9e-18 Score=144.81 Aligned_cols=141 Identities=65% Similarity=1.071 Sum_probs=111.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
...++||||||+...+..+..+|+..||.|.++.++.++++.+..... ..+.+..++..........||+||+|+.||+
T Consensus 6 ~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~-d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~ 84 (222)
T PLN03029 6 ESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHED-DRSNPDTPSVSPNSHQEVEVNLIITDYCMPG 84 (222)
T ss_pred CCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccc-cccccccccccccccccccCCEEEEcCCCCC
Confidence 356899999999999999999999999999999999999998832100 0000111111111123446899999999999
Q ss_pred CCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++|++++++|+... ...+|||++|+........+++++|+++||.||++..+|..++..++.
T Consensus 85 ~~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~ 147 (222)
T PLN03029 85 MTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMK 147 (222)
T ss_pred CCHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHH
Confidence 99999999999643 367999999999999999999999999999999999999887766554
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.77 E-value=1.2e-17 Score=143.34 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=107.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRV-SSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~-~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++||||||++..+..+..+|.. .|+. |..+.++.++++.+ ....||+||+|+.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~---------------------~~~~pdlvllD~~mp~ 62 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI---------------------ERFKPGLILLDNYLPD 62 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH---------------------HhcCCCEEEEeCCCCC
Confidence 57999999999999999999986 4775 66899999999998 5677999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|+++++.++.. .+.++||++|++.+.....++++.||++||.||++.++|...+.++..+
T Consensus 63 ~~gle~~~~l~~~-~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 124 (225)
T PRK10046 63 GRGINLLHELVQA-HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 (225)
T ss_pred CcHHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHH
Confidence 9999999999853 3568999999999999999999999999999999999999999887543
No 13
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.76 E-value=4.4e-17 Score=137.38 Aligned_cols=119 Identities=22% Similarity=0.393 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||+|||++..+..+...|...||.|..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~---------------------~~~~~dlvild~~l~~~~g 59 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYL---------------------NEHLPDIAIVDLGLPDEDG 59 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hhCCCCEEEEECCCCCCCH
Confidence 4799999999999999999999999999999999999988 5667999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++.. .+.+|||++|+..+......+++.|+++|+.||++..+|...+..++++.
T Consensus 60 ~~l~~~lr~~-~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 60 LSLIRRWRSN-DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred HHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999853 46899999999999999999999999999999999999999999988653
No 14
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.75 E-value=3.6e-17 Score=166.59 Aligned_cols=121 Identities=30% Similarity=0.526 Sum_probs=112.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+++||||||++.++..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l---------------------~~~~~DlVl~D~~mP~ 857 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL---------------------SKNHIDIVLTDVNMPN 857 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEcCCCCC
Confidence 4568999999999999999999999999999999999999998 5667999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|+|+++++.||.. .+.+|||++|++...+...+++++|+++||.||++..+|...+.++...
T Consensus 858 mdG~el~~~ir~~-~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~ 919 (924)
T PRK10841 858 MDGYRLTQRLRQL-GLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAER 919 (924)
T ss_pred CCHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999954 4679999999999999999999999999999999999999999887653
No 15
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.75 E-value=7.8e-17 Score=135.87 Aligned_cols=118 Identities=25% Similarity=0.435 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~~~g 60 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA---------------------ATRKPDLIILDLGLPDGDG 60 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCCH
Confidence 4799999999999999999999999999999999998877 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++. .+.+|+|++|++.+......+++.|+++||.||++..+|...+..+++..
T Consensus 61 ~~~~~~lr~--~~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 61 IEFIRDLRQ--WSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred HHHHHHHHc--CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999984 35789999999999999999999999999999999999999999888653
No 16
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.75 E-value=7.8e-17 Score=134.73 Aligned_cols=119 Identities=24% Similarity=0.434 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~~~d~illd~~~~~~~g 59 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALL---------------------ESGHYSLVVLDLGLPDEDG 59 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------HhCCCCEEEEECCCCCCCH
Confidence 4799999999999999999999999999999999999988 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++.. .+.+|+|++|++.+......+++.|+++|+.||++.++|...+..++.+.
T Consensus 60 ~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 60 LHLLRRWRQK-KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred HHHHHHHHhc-CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999853 46789999999999999999999999999999999999999999888654
No 17
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.75 E-value=8e-17 Score=136.16 Aligned_cols=118 Identities=23% Similarity=0.418 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+...|...|+.|..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~~~~~~g 59 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA---------------------MTGDYDLIILDIMLPDVNG 59 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hhCCCCEEEEECCCCCCCH
Confidence 4799999999999999999999999999999999999887 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++++.++.. .+.+|||++|++.+......++++|+++||.||++.++|...+..++++
T Consensus 60 ~~~~~~lr~~-~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 60 WDIVRMLRSA-NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred HHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999853 4689999999999999999999999999999999999999999988864
No 18
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.74 E-value=3.1e-17 Score=153.20 Aligned_cols=124 Identities=28% Similarity=0.481 Sum_probs=114.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
...+||||||+...+..+..+|...||.|+.+.++.+|+..+ .+.+||+||+|+.||++
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~---------------------~e~~~dlil~d~~mp~~ 189 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQL---------------------AELPPDLVLLDANMPDM 189 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHH---------------------hcCCCcEEEEecCCCcc
Confidence 567999999999999999999999999999999999999998 56699999999999999
Q ss_pred CHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 127 TGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 127 ~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
||+++++++|.. ....+|||++|+.++.....+|++.|++|||.||+...+|...+++.++....
T Consensus 190 dg~el~~~lr~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 190 DGLELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred CHHHHHHHHhcccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 999999999965 45689999999999999999999999999999999999998888888866543
No 19
>PRK11173 two-component response regulator; Provisional
Probab=99.74 E-value=8.4e-17 Score=137.47 Aligned_cols=119 Identities=26% Similarity=0.478 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+.+||||||++..+..+...|+..|+.+..+.++.+++..+ ....||+||+|+.||+++
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~~~ 61 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL---------------------SENDINLVIMDINLPGKN 61 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------hhCCCCEEEEcCCCCCCC
Confidence 45899999999999999999999999999999999999988 556899999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++.. +.+|+|++|++.+......+++.|+++||.||++..+|...+..+++..
T Consensus 62 g~~~~~~lr~~--~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 62 GLLLARELREQ--ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred HHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999853 5789999999999999999999999999999999999999998888654
No 20
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.74 E-value=6.3e-17 Score=162.96 Aligned_cols=123 Identities=25% Similarity=0.431 Sum_probs=113.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
...++||||||++..+..+..+|...|+.|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~---------------------~~~~~dlil~D~~mp~ 723 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQA---------------------KQRPFDLILMDIQMPG 723 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCC
Confidence 3467999999999999999999999999999999999999998 5678999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+|+++++.||.. ..+.+|||++|++.......++++.|+++||.||++..+|...+.+++...
T Consensus 724 ~~g~~~~~~lr~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 724 MDGIRACELIRQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred CcHHHHHHHHHhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 9999999999964 346799999999999999999999999999999999999999999988654
No 21
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.74 E-value=1.7e-16 Score=135.41 Aligned_cols=120 Identities=23% Similarity=0.442 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+...|...||.+..+.++.++++.+ ....||+||+|+.||+++
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~~~ 63 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLL---------------------TRESFHLMVLDLMLPGED 63 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCC
Confidence 46899999999999999999999999999999999999988 567899999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++.. .+.+|||++++..+......++..|+++||.||++.++|...+..++++.
T Consensus 64 g~~~~~~lr~~-~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 64 GLSICRRLRSQ-NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred HHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999853 46899999999999999999999999999999999999999999988653
No 22
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.73 E-value=1.5e-16 Score=133.03 Aligned_cols=119 Identities=20% Similarity=0.396 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~~~g 59 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEAL---------------------YSAPYDAVILDLTLPGMDG 59 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hhCCCCEEEEECCCCCCCH
Confidence 4799999999999999999998999999999999999887 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++. ..+.+|||++|++.+......++++|+++|+.||++..+|...+..+++..
T Consensus 60 ~~~~~~i~~-~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 60 RDILREWRE-KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred HHHHHHHHh-cCCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 999999985 347899999999999999999999999999999999999999999887643
No 23
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.73 E-value=1.8e-16 Score=132.67 Aligned_cols=120 Identities=25% Similarity=0.472 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~~~d~vi~d~~~~~~~g 61 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLI---------------------NERGPDLILLDWMLPGTSG 61 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH---------------------HhcCCCEEEEECCCCCCcH
Confidence 5899999999999999999998999999999999999988 4567999999999999999
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++.. ..+.+|||++|++.+......+++.|+++|+.||++.++|...+..++++.
T Consensus 62 ~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 62 IELCRRLRRRPETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred HHHHHHHHccccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 9999999854 246789999999999999999999999999999999999999999988653
No 24
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.73 E-value=1.9e-16 Score=134.03 Aligned_cols=119 Identities=25% Similarity=0.428 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~~~g 61 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL---------------------NEPWPDLILLDWMLPGGSG 61 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hccCCCEEEEeCCCCCCCH
Confidence 5799999999999999999998999999999999999988 5567999999999999999
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++++.++.. ..+.+|||++|++.+......++++|+++||.||++..+|...+..++++
T Consensus 62 ~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred HHHHHHHHhccccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999854 23679999999999999999999999999999999999999999998865
No 25
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.73 E-value=1.9e-16 Score=133.08 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||+|||+...+..+...|...||.|..+.++.++++.+ ....||+|++|+.||+++|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~~~g 61 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIM---------------------QNQHVDLILLDINLPGEDG 61 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCCH
Confidence 5899999999999999999999999999999999999988 5567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++++.++.. +.+|+|+++++.+......+++.|++||+.||++..+|...+..++++
T Consensus 62 ~~~~~~lr~~--~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 62 LMLTRELRSR--STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred HHHHHHHHhC--CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 9999999853 578999999999999999999999999999999999999999888765
No 26
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.73 E-value=1.7e-16 Score=134.72 Aligned_cols=122 Identities=23% Similarity=0.333 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc-E-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY-Q-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~-~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
+++||||||++..+..+..+|...++ . +..+.++.++++.+ ....||+||+|+.||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~DlvllD~~l~~ 61 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNL---------------------PKLDAHVLITDLSMPG 61 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCcCCC
Confidence 47999999999999999999987664 3 66799999999988 4567999999999999
Q ss_pred ---CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 126 ---MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 126 ---~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
++|++++++++. ..+.+|||++|++.+......+++.|+++|+.||++..+|..++..++.+...
T Consensus 62 ~~~~~g~~~~~~l~~-~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~ 129 (216)
T PRK10840 62 DKYGDGITLIKYIKR-HFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKF 129 (216)
T ss_pred CCCCCHHHHHHHHHH-HCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCee
Confidence 599999999984 45789999999999999999999999999999999999999999999876543
No 27
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.72 E-value=3.4e-16 Score=131.36 Aligned_cols=121 Identities=21% Similarity=0.369 Sum_probs=110.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.++||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvl~d~~~~~~~ 61 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKL---------------------RQQPPDLVILDVGLPDIS 61 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCC
Confidence 35899999999999999999998999999999999999887 556799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
|+++++.++.. .+.+|||++|++.+......++..|+++|+.||++..+|...+..++.+..
T Consensus 62 g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (228)
T PRK11083 62 GFELCRQLLAF-HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVK 123 (228)
T ss_pred HHHHHHHHHhh-CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccc
Confidence 99999999853 478999999999988889999999999999999999999999998886543
No 28
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.72 E-value=1.4e-16 Score=160.56 Aligned_cols=120 Identities=28% Similarity=0.435 Sum_probs=110.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+..+|...|++|.++.++.+|++.+ ....||+||+|+.||++
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~---------------------~~~~~dlil~D~~mp~~ 747 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELG---------------------RQHRFDLVLMDIRMPGL 747 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCC
Confidence 457899999999999999999999999999999999999988 56789999999999999
Q ss_pred CHHHHHHHHhhc---CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVS---SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~---~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+|+++++.+|.. ..+.+|||++|++.......+++++|+++||.||++..+|...+.+++.
T Consensus 748 ~G~~~~~~ir~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 748 DGLETTQLWRDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CHHHHHHHHHhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 999999999853 2367999999999999999999999999999999999999999988764
No 29
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.72 E-value=3.1e-17 Score=144.59 Aligned_cols=116 Identities=26% Similarity=0.361 Sum_probs=105.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++|+||||+..+-..+..+|++.|+.+..|+...+|++.+ ....||+|++|+.||+|+|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~L---------------------e~~kpDLifldI~mp~~ng 59 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLL---------------------EVFKPDLIFLDIVMPYMNG 59 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHH---------------------HhcCCCEEEEEeecCCccH
Confidence 4799999999999999999999998899999999999999 6789999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++++++++.. .+.+|||++|+|. +....+++..++|||.||++.+.|..+|.+..+.
T Consensus 60 iefaeQvr~i-~~~v~iifIssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 60 IEFAEQVRDI-ESAVPIIFISSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred HHHHHHHHHh-hccCcEEEEecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999954 4789999999985 5666677788899999999999999999998843
No 30
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.72 E-value=2.7e-16 Score=135.92 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=103.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-cCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRV-SSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~-~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++||||||++..+..+..+|.. .|+.+. .+.++.++++.+.. ....||+||+|+.||++
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~-------------------~~~~~DlvilD~~~p~~ 62 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN-------------------SDTPIDLILLDIYMQQE 62 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-------------------cCCCCCEEEEecCCCCC
Confidence 6899999999999999999976 477654 78999999988720 13569999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
+|+++++.++. ..+.+|||++|++.+.....+++..|+++||.||++.++|..++.++
T Consensus 63 ~G~eli~~l~~-~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 63 NGLDLLPVLHE-AGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CcHHHHHHHHh-hCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 99999999985 34789999999999999999999999999999999999999999874
No 31
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.72 E-value=4e-16 Score=131.70 Aligned_cols=118 Identities=27% Similarity=0.493 Sum_probs=107.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|...|+.+..+.++.+++..+ . ..||+||+|+.||+++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~-~~~d~vl~d~~~~~~~g 59 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---------------------D-DSIDLLLLDVMMPKKNG 59 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHh---------------------h-cCCCEEEEeCCCCCCcH
Confidence 4799999999999999999998999999999999999877 3 36999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+++++.++... + +|||++|+..+......+++.|+++||.||++.++|...+..++++..
T Consensus 60 ~~~~~~l~~~~-~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 119 (232)
T PRK10955 60 IDTLKELRQTH-Q-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 (232)
T ss_pred HHHHHHHHhcC-C-CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhccc
Confidence 99999998543 3 899999999998889999999999999999999999999999886543
No 32
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.72 E-value=1.7e-16 Score=160.37 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=111.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+.+||||||++.++..+..+|...||.|..+.++.+|++.+. ....||+||+|+.||++
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~--------------------~~~~~Dlvl~D~~mp~~ 739 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQ--------------------NSEPFAAALVDFDLPDY 739 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHH--------------------cCCCCCEEEEeCCCCCC
Confidence 4578999999999999999999999999999999999999872 34579999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|+++++.++. ..+.+|||++|++.......+++..|+++||.||++.++|...+.+++...
T Consensus 740 ~G~~~~~~lr~-~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 740 DGITLARQLAQ-QYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred CHHHHHHHHHh-hCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 99999999995 457899999999999999999999999999999999999999999998653
No 33
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.72 E-value=3.7e-16 Score=131.90 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=108.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC--CC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG--MT 127 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~--~~ 127 (241)
+||||||+...+..+...|+..||.+..+.++.+++..+ ....||+||+|+.||+ .+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~~~~~ 60 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAF---------------------RQRLPDLAIIDIGLGEEIDG 60 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHH---------------------HhCCCCEEEEECCCCCCCCC
Confidence 699999999999999999998999999999999999988 5567999999999998 58
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++.. .+.+|+|++|++.+......++++|+++|+.||++..+|...+..++++.
T Consensus 61 g~~~~~~i~~~-~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 61 GFMLCQDLRSL-SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred HHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999853 46789999999999999999999999999999999999999999988654
No 34
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.71 E-value=4.3e-16 Score=133.16 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|+..|+.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~---------------------~~~~~dlvild~~l~~~~g 60 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATI---------------------LREQPDLVLLDIMLPGKDG 60 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH---------------------hhCCCCEEEEeCCCCCCCH
Confidence 4799999999999999999999999999999999999988 5667999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++.. ...|+|++++.........++..|+++||.||++..+|...+..+++..
T Consensus 61 ~~~~~~ir~~--~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 61 MTICRDLRPK--WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred HHHHHHHHhc--CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999852 4679999999988888889999999999999999999999999888653
No 35
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.71 E-value=5.8e-16 Score=129.96 Aligned_cols=118 Identities=24% Similarity=0.463 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~---------------------~~~~~dlvi~d~~~~~~~g 59 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA---------------------LKDDYALIILDIMLPGMDG 59 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEECCCCCCCH
Confidence 4799999999999999999999999999999999999987 5667999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++.. ..+|||++|+..+.....++++.|+++|+.||++.++|...+..++.+.
T Consensus 60 ~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 60 WQILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred HHHHHHHHcC--CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999853 4789999999999999999999999999999999999999999888643
No 36
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.71 E-value=6.3e-16 Score=131.15 Aligned_cols=120 Identities=28% Similarity=0.514 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~---------------------~~~~~d~illd~~~~~~ 63 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLF---------------------RKEQPDLVILDVMMPKL 63 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeCCCCCC
Confidence 457999999999999999999998999999999999999887 45679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|+++++.++.. +.+|+|++|++.+......+++.|+++||.||++..+|...+..++++.
T Consensus 64 ~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 64 DGYGVCQEIRKE--SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred CHHHHHHHHHhc--CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999853 5799999999999999999999999999999999999999999887654
No 37
>PRK09483 response regulator; Provisional
Probab=99.70 E-value=6.4e-16 Score=129.37 Aligned_cols=121 Identities=18% Similarity=0.306 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS-SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~-g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
+++|||+||++..+..+..+|... |+.+. .+.++.+++..+ ....||+||+|+.+|+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvi~d~~~~~ 59 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWC---------------------RTNAVDVVLMDMNMPG 59 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeCCCCC
Confidence 368999999999999999999874 78875 789999999988 5567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
++|+++++.++. ..+.+|+|++|.+.+......++..|+++|+.||++.++|...+.+++.+..
T Consensus 60 ~~g~~~~~~l~~-~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~ 123 (217)
T PRK09483 60 IGGLEATRKILR-YTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR 123 (217)
T ss_pred CCHHHHHHHHHH-HCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCc
Confidence 999999999984 3578999999999999999999999999999999999999999999987654
No 38
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.70 E-value=8.8e-16 Score=127.97 Aligned_cols=118 Identities=28% Similarity=0.485 Sum_probs=108.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYD 130 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~e 130 (241)
||++||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvl~d~~~~~~~g~~ 59 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLA---------------------LKDDYDLIILDVMLPGMDGWQ 59 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCCHHH
Confidence 68999999999999999998999999999999999988 566799999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 131 LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+++.++.. .+.+|||++|+..+......++.+|+++|+.||++.++|...+..++.+..
T Consensus 60 ~~~~l~~~-~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 118 (218)
T TIGR01387 60 ILQTLRRS-GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSH 118 (218)
T ss_pred HHHHHHcc-CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 99999843 468999999999999999999999999999999999999999999886543
No 39
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.70 E-value=7.8e-16 Score=127.66 Aligned_cols=119 Identities=18% Similarity=0.313 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
++||++||++..+..+...|+..|+.+. .+.++.++++.+ ....||+|++|+.+|+++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~---------------------~~~~~dlvi~d~~~~~~~ 59 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV---------------------ETLKPDIVIIDVDIPGVN 59 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH---------------------HccCCCEEEEeCCCCCCC
Confidence 4799999999999999999998899987 699999999988 556799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++. ..+..|+|++|+.........++..|+++|+.||++.++|...+..++++.
T Consensus 60 g~~~~~~l~~-~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 60 GIQVLETLRK-RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred HHHHHHHHHh-hCCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 9999999985 346789999999999999999999999999999999999999999998653
No 40
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.70 E-value=7.5e-16 Score=132.27 Aligned_cols=117 Identities=23% Similarity=0.447 Sum_probs=105.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
+||+|||++..+..+...|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvi~d~~l~~~~g~ 61 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVL---------------------ASETVDVVVVDLNLGREDGL 61 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------hhCCCCEEEEeCCCCCCCHH
Confidence 799999999999999999999999999999999999988 56789999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEecCC-ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSEN-VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~-~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
++++.++.. ..+|+|++|+.. .......+++.|+++||.||++..+|...+..+++..
T Consensus 62 ~l~~~i~~~--~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 62 EIVRSLATK--SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred HHHHHHHhc--CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999853 478999999854 5667789999999999999999999999998888653
No 41
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.70 E-value=3.6e-16 Score=158.65 Aligned_cols=121 Identities=26% Similarity=0.390 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
...+||||||++.++..+..+|+..||.|.++.++.+|++.+ ....||+||+|+.||++
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvl~D~~mp~~ 759 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECF---------------------HQHAFDLALLDINLPDG 759 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------HCCCCCEEEECCCCCCC
Confidence 345899999999999999999999999999999999999998 55789999999999999
Q ss_pred CHHHHHHHHhhcCC-CC-CcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSW-KD-VPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~-~~-~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|+++++.|+.... .. +|||++|++.......+++..|+++||.||++..+|...+.+++..
T Consensus 760 ~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 760 DGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999996421 12 8999999999999999999999999999999999999999998854
No 42
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.69 E-value=1e-15 Score=133.68 Aligned_cols=120 Identities=22% Similarity=0.319 Sum_probs=105.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS-SYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~-g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++||||||++..+..+...|... ++.+ ..+.++.++++.+ ....||+||+|+.||+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l---------------------~~~~~DlvllD~~mp~ 60 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELI---------------------KEQQPDVVVLDIIMPH 60 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeCCCCC
Confidence 468999999999999999999754 5555 4789999999998 5677999999999999
Q ss_pred CCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|+++++.++... ...+|||++|++........+++.|+++|+.||++.++|...+.+++..
T Consensus 61 ~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 61 LDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999998542 2248899999999999999999999999999999999999999988754
No 43
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.68 E-value=1.3e-15 Score=151.90 Aligned_cols=122 Identities=21% Similarity=0.417 Sum_probs=107.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
...++||||||++.++..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~---------------------~~~~~Dlvl~D~~mp~ 581 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMF---------------------DPDEYDLVLLDIQLPD 581 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh---------------------hcCCCCEEEEcCCCCC
Confidence 3457999999999999999999999999999999999999998 5667999999999999
Q ss_pred CCHHHHHHHHhhcC-CCC-CcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSS-WKD-VPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~-~~~-~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
++|+++++.||... .+. +|||++|++... ...++++.|+++||.||++..+|...+.+++...
T Consensus 582 ~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 582 MTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred CCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999643 245 489999987654 4678999999999999999999999999998543
No 44
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.67 E-value=9.6e-16 Score=143.34 Aligned_cols=120 Identities=30% Similarity=0.496 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+...|...||.+.++.++.++++.+ ....||+||+|+.||++
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~DlvilD~~m~~~ 62 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV---------------------REQVFDLVLCDVRMAEM 62 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCC
Confidence 457999999999999999999999999999999999999988 55679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|+++++.++. ..+.+|||++|++........+++.|+.+||.||++.+.|...+.+++..
T Consensus 63 ~G~~~~~~ir~-~~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 63 DGIATLKEIKA-LNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred CHHHHHHHHHh-hCCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999985 45789999999999999999999999999999999999999988887653
No 45
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.67 E-value=1.5e-15 Score=122.47 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=106.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
+.||||||..+...|...++..||.|.++++..+++..+ ....|...++|+.|.+.+|+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~a---------------------rt~~PayAvvDlkL~~gsGL 69 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAA---------------------RTAPPAYAVVDLKLGDGSGL 69 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHH---------------------hcCCCceEEEEeeecCCCch
Confidence 799999999999999999999999999999999999998 67789999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.+++.|+. ..++..||++|++.+-....+|++.||++||.||-+.+++..++.+-
T Consensus 70 ~~i~~lr~-~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 70 AVIEALRE-RRADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred HHHHHHHh-cCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 99999995 45799999999999999999999999999999999999988776554
No 46
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.67 E-value=3.6e-15 Score=123.58 Aligned_cols=120 Identities=27% Similarity=0.350 Sum_probs=107.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS-SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~-g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+|||+||++..+..+...|... ++.+. .+.++.++++.+ ....||+|++|+.||+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~dlvild~~l~~ 61 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYL---------------------RTRPVDLIIMDIDLPG 61 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeCCCCC
Confidence 468999999999999999999876 57775 688999999887 5567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
++|+++++.++. ..+.+|||++|++........++..|+++|+.||++.++|...+..++.+.
T Consensus 62 ~~g~~~~~~l~~-~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 62 TDGFTFLKRIKQ-IQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred CCHHHHHHHHHH-hCCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 999999999985 346799999999999899999999999999999999999999999988764
No 47
>PRK14084 two-component response regulator; Provisional
Probab=99.67 E-value=2e-15 Score=130.17 Aligned_cols=116 Identities=18% Similarity=0.319 Sum_probs=100.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-c-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSS-Y-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g-~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++||||||++..+..+..+|...+ + .+..+.++.+++..+ ....||+|++|+.||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~---------------------~~~~~dlv~lDi~m~~~ 59 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEAL---------------------LINQYDIIFLDINLMDE 59 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH---------------------HhcCCCEEEEeCCCCCC
Confidence 479999999999999999998765 4 467899999999988 45679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|+++++.++. ..+..+||++|++. ....++++.|+.+||.||++.++|..++.++...
T Consensus 60 ~G~~~~~~i~~-~~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 60 SGIELAAKIQK-MKEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred CHHHHHHHHHh-cCCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999985 34567788888875 4567899999999999999999999999998754
No 48
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.67 E-value=3.5e-15 Score=123.01 Aligned_cols=116 Identities=29% Similarity=0.417 Sum_probs=104.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVS-SYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~-g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++||||||++..+..+...|... ++. +..+.++.++++.+ ....||+||+|+.||++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~dlvi~d~~~~~~ 60 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGL---------------------PGRGVQVCICDISMPDI 60 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCC
Confidence 58999999999999999999754 565 56789999999988 55679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|+++++.++ +.+|||++|++........++..|+++|+.||++.++|...+..++.+.
T Consensus 61 ~g~~~~~~l~----~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 61 SGLELLSQLP----KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred CHHHHHHHHc----cCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 9999999886 3579999999999999999999999999999999999999999998753
No 49
>PRK15115 response regulator GlrR; Provisional
Probab=99.67 E-value=1.8e-15 Score=142.05 Aligned_cols=119 Identities=28% Similarity=0.410 Sum_probs=110.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+...|+..||.|..+.++.+|+..+ ....||+||+|+.||+++
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l---------------------~~~~~dlvilD~~lp~~~ 63 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVL---------------------NREKVDLVISDLRMDEMD 63 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hcCCCCEEEEcCCCCCCC
Confidence 46899999999999999999999999999999999999988 566799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|+++++.++. ..+.+|||++|++.+.....++++.|+++||.||++..+|...+.+++..
T Consensus 64 g~~ll~~l~~-~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 64 GMQLFAEIQK-VQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred HHHHHHHHHh-cCCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 9999999984 45789999999999999999999999999999999999999999988754
No 50
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.66 E-value=8.9e-16 Score=141.99 Aligned_cols=120 Identities=21% Similarity=0.376 Sum_probs=107.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
....+||||||++..+..+..+|.. ++.+..+.++.+|+..+ ....||+||+|+.||+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~---------------------~~~~~d~vi~d~~~p~ 210 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNA---------------------AETNYDLVIVSANFEN 210 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhc---------------------ccCCCCEEEecCCCCC
Confidence 4466899999999999999999964 57777899999999987 6778999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++|+++++.++.. ..+.+|||++|++.+.....+|++.|++|||.||++.++|...+...+.
T Consensus 211 ~~g~~l~~~i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 211 YDPLRLCSQLRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred chHhHHHHHHHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 9999999999953 4578999999999999999999999999999999999999888776543
No 51
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.66 E-value=2.6e-15 Score=141.90 Aligned_cols=118 Identities=28% Similarity=0.431 Sum_probs=109.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+..+|...||.|.++.++.+++..+ ....||+||+|+.||+++
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l---------------------~~~~~DlvllD~~lp~~d 61 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEAL---------------------ASKTPDVLLSDIRMPGMD 61 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------hcCCCCEEEECCCCCCCC
Confidence 35899999999999999999999999999999999999998 567799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|+++++.++. ..+.+|+|++|++.+......+++.|+++||.||++..+|...+.+++.
T Consensus 62 gl~~l~~ir~-~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 62 GLALLKQIKQ-RHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred HHHHHHHHHh-hCCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 9999999985 4478999999999999999999999999999999999999998887765
No 52
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.65 E-value=4.1e-15 Score=139.82 Aligned_cols=119 Identities=24% Similarity=0.452 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+...|...||.|.++.++.+++..+ ....||+||+|+.||+++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~dlillD~~~p~~~ 62 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF---------------------ADIHPDVVLMDIRMPEMD 62 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCC
Confidence 45899999999999999999999999999999999999988 566799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|+++++.++. ..+.+|||++|++.+.....++++.|+++|+.||++.++|...+.+++..
T Consensus 63 g~~ll~~i~~-~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 63 GIKALKEMRS-HETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred HHHHHHHHHh-cCCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999999985 34789999999999999999999999999999999999999988877653
No 53
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.64 E-value=3.5e-15 Score=154.92 Aligned_cols=119 Identities=25% Similarity=0.419 Sum_probs=110.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
...+||||||++..+..+..+|+..|+.|..+.++.+|++.+ ....||+||+|+.||++
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlil~D~~mp~~ 1015 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV---------------------SMQHYDLLITDVNMPNM 1015 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh---------------------hcCCCCEEEEeCCCCCC
Confidence 356899999999999999999999999999999999999998 56789999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+|+++++.++. ..+.+|||++|++.......++++.|+++||.||++.++|...+.+++.
T Consensus 1016 ~g~~~~~~i~~-~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1016 DGFELTRKLRE-QNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHh-cCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 99999999985 4478999999999999999999999999999999999999999988764
No 54
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.64 E-value=1.7e-14 Score=122.38 Aligned_cols=118 Identities=25% Similarity=0.469 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvl~d~~~~~~~g 69 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYV---------------------RQTPPDLILLDLMLPGTDG 69 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hhCCCCEEEEeCCCCCCCH
Confidence 3899999999999999999999999999999999999988 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++. .+.+|+|+++++........++..|+++|+.||++..+|...+..++...
T Consensus 70 ~~~~~~l~~--~~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 70 LTLCREIRR--FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred HHHHHHHHh--cCCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 999999984 35789999999998888899999999999999999999999998887653
No 55
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.64 E-value=1.4e-14 Score=120.92 Aligned_cols=119 Identities=28% Similarity=0.449 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||++||++..+..+...|...|+.+.++.++.+++..+ ....||+|++|+.+|+++|
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~d~vild~~~~~~~~ 59 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLL---------------------QSEMYALAVLDINMPGMDG 59 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hhCCCCEEEEeCCCCCCcH
Confidence 4799999999999999999998999999999999998877 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++.. .+.+|+|++|++.+.....+++..|+++|+.||++..+|...+..++.+.
T Consensus 60 ~~~~~~i~~~-~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 60 LEVLQRLRKR-GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred HHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999853 46789999999999999999999999999999999999999998887643
No 56
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.64 E-value=7.7e-15 Score=125.59 Aligned_cols=116 Identities=25% Similarity=0.365 Sum_probs=98.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-cE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS-YQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g-~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
+++|+||||++..+..+..+|...| +. +..+.++.++++.+ ....||++|+|+.||+
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~dlv~lDi~~~~ 59 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAI---------------------HRLKPDVVFLDIQMPR 59 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeCCCCC
Confidence 3689999999999999999998877 34 45689999999988 4567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|+++++.++.. ...+||++|++. +...++++.|+.+||.||++.++|...+.++...
T Consensus 60 ~~G~~~~~~l~~~--~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 60 ISGLELVGMLDPE--HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred CCHHHHHHHhccc--CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999998632 244688888875 4677899999999999999999999999988753
No 57
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.63 E-value=4.7e-15 Score=139.18 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=103.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-----
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG----- 125 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~----- 125 (241)
||||||++..+..+...| .||.|.++.++.+|++.+ ....||+||+|+.||+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l---------------------~~~~~dlvllD~~mp~~~~~~ 57 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALV---------------------RRHEPAVVTLDLGLPPDADGA 57 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHH---------------------hhCCCCEEEEeCCCCCCcCCC
Confidence 689999999999999888 799999999999999998 5568999999999996
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++|+++++.++. ..+.+|||++|++.+.+...++++.|+++||.||++.++|...+.+++.
T Consensus 58 ~~g~~~l~~i~~-~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 58 SEGLAALQQILA-IAPDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CCHHHHHHHHHh-hCCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 899999999984 4578999999999999999999999999999999999999998887764
No 58
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.63 E-value=5.6e-15 Score=139.22 Aligned_cols=115 Identities=32% Similarity=0.474 Sum_probs=106.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYD 130 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~e 130 (241)
||||||++..+..+...|...||.|..+.++.+++..+ ....||+||+|+.||+++|++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~DlVllD~~~p~~~g~~ 59 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRAL---------------------ARGQPDLLITDVRMPGEDGLD 59 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEcCCCCCCCHHH
Confidence 68999999999999999999999999999999999988 556799999999999999999
Q ss_pred HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 131 LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+++.++. ..+.+|||++|++.......+++++|+++|+.||++.++|...+.+++.
T Consensus 60 ll~~l~~-~~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 60 LLPQIKK-RHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred HHHHHHH-hCCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 9999985 4578999999999999999999999999999999999999999888764
No 59
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.62 E-value=1.6e-14 Score=117.90 Aligned_cols=119 Identities=30% Similarity=0.389 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+.+|||+||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.+|+++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~d~ii~d~~~~~~~ 61 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDAL---------------------PGLRFGCVVTDVRMPGID 61 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHh---------------------ccCCCCEEEEeCCCCCCc
Confidence 46899999999999999999998999999999999999887 566799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|+++++.++. ..+.+|+|++|+..+......+++.|+.+|+.||+....+...+..++..
T Consensus 62 ~~~~~~~l~~-~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 62 GIELLRRLKA-RGSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred HHHHHHHHHh-cCCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 9999999985 34789999999999999999999999999999999999999988887764
No 60
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.62 E-value=1.3e-14 Score=124.96 Aligned_cols=121 Identities=8% Similarity=0.075 Sum_probs=99.3
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.....++++|||++..+..+..+|. .++.+ ..+.++.+++..+ . .||+||+|+.|
T Consensus 7 ~~~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~---------------------~--~~DvvllDi~~ 62 (216)
T PRK10100 7 SSHGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDI---------------------S--SGSIILLDMME 62 (216)
T ss_pred cccCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccC---------------------C--CCCEEEEECCC
Confidence 3445679999999999999999998 55554 4678998988765 2 39999999999
Q ss_pred CCCCHHHHH-HHHhhcCCCCCcEEEEecCCChHHHHHHHH--cCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 124 PGMTGYDLL-KRLKVSSWKDVPVVVMSSENVPSRVTMCLE--EGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 124 p~~~G~el~-~~lr~~~~~~~pII~lsa~~~~~~~~~a~~--~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
|+++|++++ +.++ ...+.++||++|++.+. ...++. .||.+|+.|+.+.++|.++++.++.+....
T Consensus 63 p~~~G~~~~~~~i~-~~~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~ 131 (216)
T PRK10100 63 ADKKLIHYWQDTLS-RKNNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYF 131 (216)
T ss_pred CCccHHHHHHHHHH-HhCCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCccc
Confidence 999999997 5577 44578999999998763 344555 599999999999999999999999876543
No 61
>PRK13435 response regulator; Provisional
Probab=99.60 E-value=9.3e-14 Score=110.26 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=101.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP- 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp- 124 (241)
..++|||+|++......+...|...|+.+. .+.++.++++.+ ....||+||+|+.++
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~dliivd~~~~~ 62 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALG---------------------RRRQPDVALVDVHLAD 62 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHh---------------------hhcCCCEEEEeeecCC
Confidence 467999999999999999999998899876 789999999987 456799999999998
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
+.+|+++++.++. .+.+|+|++++..+ ...++..|+++|+.||++..+|...+.++..+...
T Consensus 63 ~~~~~~~~~~l~~--~~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 63 GPTGVEVARRLSA--DGGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred CCcHHHHHHHHHh--CCCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 5899999999874 25789999987643 24678899999999999999999999988754433
No 62
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.59 E-value=3.3e-14 Score=129.41 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=98.2
Q ss_pred cEEEEEeCCHHHHHHHHHHH-hhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLL-RVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L-~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++||||||++..+..+..+| +..|+.+. .+.++.++++.+ ....||+|++|+.||+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l---------------------~~~~pDlVllD~~mp~~ 59 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERC---------------------AAQPPDVILMDLEMPRM 59 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH---------------------hccCCCEEEEcCCCCCC
Confidence 47999999999999999999 46688876 689999999998 55679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCC--hHHHHHHHHcCCcceEeCCC---------ChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENV--PSRVTMCLEEGAEEFLLKPV---------RLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~--~~~~~~a~~~Ga~dyL~KP~---------~~~~L~~~i~~~l~ 187 (241)
+|++++++++.. ..+|+|++|+... .....++++.|+++|+.||+ ..++|...++.+..
T Consensus 60 ~G~e~l~~l~~~--~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 60 DGVEATRRIMAE--RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred CHHHHHHHHHHH--CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 999999999853 3589999988754 45677899999999999999 55666666666654
No 63
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.59 E-value=5.2e-14 Score=130.20 Aligned_cols=118 Identities=32% Similarity=0.500 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||+|||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvi~d~~~~~~~g 61 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAIC---------------------EREQPDIILLDVMMPGMDG 61 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH---------------------hhcCCCEEEEeCCCCCCCH
Confidence 4799999999999999999998899999999999999998 5667999999999999999
Q ss_pred HHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++++++++... .+.+|||++|+..+.....+++..|+++|+.||++.++|...+.+++.
T Consensus 62 ~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 62 FEVCRRLKSDPATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred HHHHHHHHcCcccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 99999998532 357899999999999999999999999999999999999988887764
No 64
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.58 E-value=2.1e-13 Score=101.92 Aligned_cols=120 Identities=26% Similarity=0.516 Sum_probs=106.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..++|+++++++.....+...|...|+. +..+.++.+++..+ ....||++++|+.+++
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~di~l~d~~~~~ 62 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL---------------------QAGGFGFVISDWNMPN 62 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHh---------------------hccCCCEEEEcCCCCC
Confidence 3578999999999999999999988884 77889999999887 4567999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++|+++++.++.. ..+.+|+++++..........++..|+++|+.||++..++...+.+++.
T Consensus 63 ~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 63 MDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred CCHHHHHHHHHhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 9999999999854 2357899999988888888999999999999999999999998888764
No 65
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.58 E-value=2.5e-14 Score=140.32 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=105.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+.++||||||++..+..+..+|...||.|..+.++.+++..+ ....||+||+|+.||++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~---------------------~~~~~Dlvl~d~~lp~~ 64 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRV---------------------EAGEIDCVVADHEPDGF 64 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHh---------------------hccCCCEEEEeccCCCC
Confidence 357999999999999999999998899999999999999988 56679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChH--HHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLS--DLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~--~L~~~i~~~l~~ 188 (241)
+|++++++++. ..+.+|||++|+..+.....+++..|+.+|+.||.... .+...+...+..
T Consensus 65 ~g~~~l~~l~~-~~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 65 DGLALLEAVRQ-TTAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred cHHHHHHHHHh-cCCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999985 45789999999999999999999999999999997543 555556655544
No 66
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.57 E-value=4.4e-14 Score=120.91 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=92.4
Q ss_pred HHHHHHHHhh---cCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE---EeCCCCCCCHHHHHHH
Q 026247 61 RKILENLLRV---SSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM---TDYCMPGMTGYDLLKR 134 (241)
Q Consensus 61 ~~~l~~~L~~---~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl---lD~~mp~~~G~el~~~ 134 (241)
|..+..+|.. .||.|..+.+++++++.+ ....||++| +|+.||+++|++++++
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~---------------------~~~~pd~vl~dl~d~~mp~~~Gl~~~~~ 61 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAM---------------------SRISFSAVIFSLSAMRSERREGLSCLTE 61 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHh---------------------ccCCCCEEEeeccccCCCCCCHHHHHHH
Confidence 5677888864 466677899999999987 556789998 6888999999999999
Q ss_pred HhhcCCCCCcEEEEecCCChHHHHHHH-HcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 135 LKVSSWKDVPVVVMSSENVPSRVTMCL-EEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 135 lr~~~~~~~pII~lsa~~~~~~~~~a~-~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
|+. ..+.+|||++|++++......++ ++||++||.||++.++|..+++.++.+...
T Consensus 62 l~~-~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~ 118 (207)
T PRK11475 62 LAI-KFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQ 118 (207)
T ss_pred HHH-HCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcc
Confidence 984 45889999999988777666655 799999999999999999999999987644
No 67
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.56 E-value=1.7e-13 Score=113.33 Aligned_cols=119 Identities=25% Similarity=0.393 Sum_probs=105.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRV-SSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~-~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++|||+||++..+..+...|.. .++.+. .+.++.+++..+ ....||+||+|+.||+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~dlvi~d~~~~~ 64 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLA---------------------NRLDPDVILLDLNMKG 64 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH---------------------HhcCCCEEEEecCCCC
Confidence 46899999999999999999975 577775 688999999887 4567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|+++++.++. ..+..|+++++.+........+++.|+++|+.||++..+|...+..++.+
T Consensus 65 ~~~~~~~~~l~~-~~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 65 MSGLDTLNALRR-DGVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CcHHHHHHHHHH-hCCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 999999999985 34678999999988888899999999999999999999999999988754
No 68
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.56 E-value=2.1e-13 Score=113.05 Aligned_cols=121 Identities=28% Similarity=0.410 Sum_probs=107.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-CcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVS-SYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~-g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+..+||||||++..+..+..+|... ++.+ ..+.++.+++..+ ....||+||+|+.+|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~dlvl~d~~l~ 63 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELA---------------------ESLDPDLILLDLNMP 63 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHH---------------------HhCCCCEEEEeCCCC
Confidence 4568999999999999999999764 5654 4689999999988 556799999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++|+++++.++.. .+..|+|++++..+......++..|+++|+.||++..+|...+..++.+.
T Consensus 64 ~~~~~~~~~~l~~~-~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 64 GMNGLETLDKLREK-SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred CCcHHHHHHHHHHh-CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999853 46789999999999999999999999999999999999999999998653
No 69
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.56 E-value=2.2e-13 Score=111.63 Aligned_cols=120 Identities=21% Similarity=0.367 Sum_probs=106.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS-SYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~-g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++|||+||++..+..+...|... ++.+ ..+.++.+++..+ ....||+|++|+.||+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~dlvl~d~~~~~ 61 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNAC---------------------RQLEPDIVILDLGLPG 61 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH---------------------HhcCCCEEEEeCCCCC
Confidence 468999999999999999999865 4665 4788999998877 4567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
++|+++++.++.. .+.+|+|++|+.........++..|+++|+.||++..+|...+..++.+.
T Consensus 62 ~~~~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 62 MNGLDVIPQLHQR-WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred CCHHHHHHHHHHH-CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999853 46789999999999999999999999999999999999999999887653
No 70
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.56 E-value=1.3e-13 Score=126.10 Aligned_cols=118 Identities=28% Similarity=0.364 Sum_probs=97.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVS-SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~-g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++||||||+...+..+..+|... |+.+. .+.++.+++..+ ....||+|++|+.||
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~---------------------~~~~~DlVllD~~mp 60 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKI---------------------KKLNPDVITLDVEMP 60 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH---------------------hhhCCCEEEEeCCCC
Confidence 3579999999999999999999876 78877 789999999988 566799999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCC--hHHHHHHHHcCCcceEeCCCCh---------HHHHHHHHHHhc
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENV--PSRVTMCLEEGAEEFLLKPVRL---------SDLEKLQPRLLK 187 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~--~~~~~~a~~~Ga~dyL~KP~~~---------~~L~~~i~~~l~ 187 (241)
+++|++++++|+... + +|+|++|++.. .....++++.|+++||.||+.. ..|...++.+..
T Consensus 61 ~~dgle~l~~i~~~~-~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~ 132 (354)
T PRK00742 61 VMDGLDALEKIMRLR-P-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAAR 132 (354)
T ss_pred CCChHHHHHHHHHhC-C-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhh
Confidence 999999999998543 4 89999997643 4567789999999999999943 445555555543
No 71
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.55 E-value=1.3e-13 Score=117.83 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=99.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc---EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC--C
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY---QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC--M 123 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~---~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~--m 123 (241)
++|+||||++..+..++.+|...++ .|..+.++.++++.+ ....||+||+|+. |
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~---------------------~~~~pDlvLlDl~~~l 59 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIAC---------------------DSLRPSVVFINEDCFI 59 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHH---------------------hccCCCEEEEeCcccC
Confidence 4699999999999999999986553 345789999999987 5567999999976 8
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcc-eEeCCCChHHHHHHHHHHhcCCCC
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE-FLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~d-yL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
|+++|.+++++|+. ..|.++||++|++.+..... ++..|+.. |+.|+.+.++|..+++.+..+...
T Consensus 60 ~~~~g~~~i~~i~~-~~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~ 126 (207)
T PRK15411 60 HDASNSQRIKQIIN-QHPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETT 126 (207)
T ss_pred CCCChHHHHHHHHH-HCCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcc
Confidence 88899999999984 45789999999998766543 55556655 889999999999999999876543
No 72
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.49 E-value=2.7e-13 Score=123.48 Aligned_cols=104 Identities=29% Similarity=0.484 Sum_probs=92.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-cE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS-YQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g-~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++||||||..+.|..++++|...| ++ |-.+.|+.+|++.+ ....||+|.+|+.||.
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~---------------------~~~~PDVi~ld~emp~ 59 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKV---------------------KKLKPDVITLDVEMPV 59 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHH---------------------HhcCCCEEEEeccccc
Confidence 3699999999999999999999888 44 55789999999999 6788999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCC--hHHHHHHHHcCCcceEeCCCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENV--PSRVTMCLEEGAEEFLLKPVR 174 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~--~~~~~~a~~~Ga~dyL~KP~~ 174 (241)
|||+++++.+... ..+|||++|+-.. .+...++++.||.||+.||..
T Consensus 60 mdgl~~l~~im~~--~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 60 MDGLEALRKIMRL--RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ccHHHHHHHHhcC--CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9999999999743 6899999977543 567889999999999999985
No 73
>PRK09191 two-component response regulator; Provisional
Probab=99.48 E-value=1.5e-12 Score=112.87 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=100.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
-..+|||+||++..+..+...|+..|+.+. .+.++.++++.+ ....||+||+|+.||+
T Consensus 136 ~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l---------------------~~~~~dlvi~d~~~~~ 194 (261)
T PRK09191 136 VATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALA---------------------KKTRPGLILADIQLAD 194 (261)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHH---------------------hccCCCEEEEecCCCC
Confidence 345899999999999999999998899887 789999999988 4567999999999995
Q ss_pred -CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 -MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 -~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
++|+++++.++... .+|||++|+....... +...|+.+|+.||++.++|...+.+++...
T Consensus 195 ~~~g~e~l~~l~~~~--~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 195 GSSGIDAVNDILKTF--DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred CCCHHHHHHHHHHhC--CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 89999999998543 7899999997665443 345678899999999999999999887543
No 74
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.47 E-value=1.4e-12 Score=131.59 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=106.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+.+||||||++..+..+...|...||.++.+.++.++++.+.. ....||+||+ .||++
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~-------------------~~~~~DlVll--~~~~~ 754 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISK-------------------GPERFDLVLV--DDRLL 754 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-------------------CCCCceEEEE--CCCCC
Confidence 35689999999999999999999999999999999999998820 1235899999 79999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|+++++.++. ..+.+|||++|+........+++..| ++||.||++..+|...+.+++...
T Consensus 755 ~g~~l~~~l~~-~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 755 DEEQAAAALHA-AAPTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred CHHHHHHHHHh-hCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99999999985 45789999999999999999999999 999999999999999999988643
No 75
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.45 E-value=3.9e-12 Score=90.64 Aligned_cols=112 Identities=32% Similarity=0.580 Sum_probs=99.5
Q ss_pred EEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHH
Q 026247 52 LAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDL 131 (241)
Q Consensus 52 LIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el 131 (241)
+++++++..+..+...+...|+.+..+.+..+++..+ ....||++++|+.+++.+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ii~~~~~~~~~~~~~ 59 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALL---------------------AEEKPDLILLDIMMPGMDGLEL 59 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHH---------------------HhCCCCEEEEecCCCCCchHHH
Confidence 5789999999999999998899999999999999887 4567999999999999999999
Q ss_pred HHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 132 LKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 132 ~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
++.++.. .+.+|+++++..........++..|+.+|+.||++...|...+..+
T Consensus 60 ~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 60 LRRIRKR-GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred HHHHHHh-CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 9999854 4678999998887778888999999999999999999988877653
No 76
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.43 E-value=1.1e-12 Score=109.77 Aligned_cols=118 Identities=23% Similarity=0.302 Sum_probs=99.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..++||++||+.+.+..+...|...||.++ ++.++-++.+.+ ....||+||+|+.+|.
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~---------------------~~~~pDvVildie~p~ 62 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC---------------------ERLQPDVVILDIEMPR 62 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH---------------------HhcCCCEEEEecCCCC
Confidence 356899999999999999999999999765 678888888877 6778999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|-.+-.. +. ......|||++|++++...+..++++|+.+||+||++...|...+.-...
T Consensus 63 rd~~e~~~-~~-~~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~s 122 (194)
T COG3707 63 RDIIEALL-LA-SENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVS 122 (194)
T ss_pred ccHHHHHH-Hh-hcCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHH
Confidence 99333322 22 33467799999999999999999999999999999999999876665543
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.40 E-value=1.2e-11 Score=116.72 Aligned_cols=122 Identities=25% Similarity=0.327 Sum_probs=108.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG- 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~- 125 (241)
.+.+|||+||++..+..+..+|+..||.+..+.++.++++.+. ....||+||+|..||+
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------------~~~~~d~vi~d~~~~~~ 473 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILD--------------------SHPEVDLLFTDLIMPGG 473 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHh--------------------cCCCceEEEEeccCCCC
Confidence 3568999999999999999999999999999999999999872 2346999999999997
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
++|+++++.++.. .+.+|||++|++........++..|+.+|+.||++.++|...+..++..+
T Consensus 474 ~~~~~~~~~l~~~-~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 536 (540)
T PRK13557 474 MNGVMLAREARRR-QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDGP 536 (540)
T ss_pred CCHHHHHHHHHHh-CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcCC
Confidence 9999999999853 46789999999988888888999999999999999999999999887643
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.33 E-value=1.3e-11 Score=111.11 Aligned_cols=89 Identities=30% Similarity=0.465 Sum_probs=79.4
Q ss_pred EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHH
Q 026247 77 CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSR 156 (241)
Q Consensus 77 ~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~ 156 (241)
.+.++.+|++.+ ....||+||+|+.||+++|++++++++.. .+.+|||++|++.+.+.
T Consensus 2 ~a~~g~~al~~l---------------------~~~~pDlVL~D~~mp~~~Gle~~~~ir~~-~~~ipiI~lt~~~~~~~ 59 (303)
T PRK10693 2 LAANGVDALELL---------------------GGFTPDLIICDLAMPRMNGIEFVEHLRNR-GDQTPVLVISATENMAD 59 (303)
T ss_pred EeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCcEEEEECCCCHHH
Confidence 467899999988 56779999999999999999999999854 46799999999999999
Q ss_pred HHHHHHcCCcceEeCCC-ChHHHHHHHHHHhc
Q 026247 157 VTMCLEEGAEEFLLKPV-RLSDLEKLQPRLLK 187 (241)
Q Consensus 157 ~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~~l~ 187 (241)
..++++.|++|||.||+ +.++|...+.+.+.
T Consensus 60 ~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~ 91 (303)
T PRK10693 60 IAKALRLGVQDVLLKPVKDLNRLREMVFACLY 91 (303)
T ss_pred HHHHHHCCCcEEEECCCCcHHHHHHHHHHHhh
Confidence 99999999999999999 58989888877764
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.21 E-value=7.7e-11 Score=117.36 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=87.4
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccC-CCccEEEE
Q 026247 49 FHVLAVDDSLI--------DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE-SRVNLIMT 119 (241)
Q Consensus 49 ~~VLIVDDd~~--------~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVll 119 (241)
|+||||||+.. .+..+...|+..||+|.++.++.+|+..+ .. ..||+||+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l---------------------~~~~~~DlVLL 59 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL---------------------SSNEAIDCLMF 59 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------HhcCCCcEEEE
Confidence 47999999995 69999999999999999999999999998 44 58999999
Q ss_pred eCCCCCCCHH----HHHHHHhhcCCCCCcEEEEecCCC--hHHHHHHHHcCCcceEeCCCChHHH
Q 026247 120 DYCMPGMTGY----DLLKRLKVSSWKDVPVVVMSSENV--PSRVTMCLEEGAEEFLLKPVRLSDL 178 (241)
Q Consensus 120 D~~mp~~~G~----el~~~lr~~~~~~~pII~lsa~~~--~~~~~~a~~~Ga~dyL~KP~~~~~L 178 (241)
|+.||+++|+ +++++||. ..+++|||++|+..+ ...-.. .---+++|+.+--+..++
T Consensus 60 D~~LPd~dG~~~~~ell~~IR~-~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 60 SYQMEHPDEHQNVRQLIGKLHE-RQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADF 122 (755)
T ss_pred ECCCCCCccchhHHHHHHHHHh-hCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHH
Confidence 9999999997 89999995 346899999999885 222222 223467788886665554
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-10 Score=101.25 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=96.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-cEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS-YQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g-~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
+++|+++||++..+..+..++.... +++ ..+.++.++++.+ ....+|++++|+.||+
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~fldI~~~~ 59 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLL---------------------QGLRPDLVFLDIAMPD 59 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHH---------------------hccCCCeEEEeeccCc
Confidence 3689999999999999999998322 232 2688999999998 4558999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
++|+++++.|+. ..+..+||++|+++ +....+++..+.|||.||+..+.|...+.+..
T Consensus 60 ~~G~ela~~i~~-~~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~ 117 (244)
T COG3279 60 INGIELAARIRK-GDPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLR 117 (244)
T ss_pred cchHHHHHHhcc-cCCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHH
Confidence 999999999984 35677899999984 66667889999999999999999999888654
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.74 E-value=1.8e-07 Score=94.56 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=96.9
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
...+.+|+|+||++..+..+..+|...|+.+..+.++.+ + ....||++++|+.||
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l---------------------~~~~~d~il~~~~~~ 587 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L---------------------PEAHYDILLLGLPVT 587 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h---------------------ccCCCCEEEecccCC
Confidence 345679999999999999999999999999999988887 3 456799999999999
Q ss_pred CCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 125 GMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 125 ~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
++++...+...... .....++|+++..........+.+.|+++|+.||+...++...+....
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 588 FREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 88877655444322 233456788888888888899999999999999999999988887654
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.34 E-value=7.4e-07 Score=83.92 Aligned_cols=91 Identities=31% Similarity=0.455 Sum_probs=78.8
Q ss_pred cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 73 YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 73 ~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
++|..+..+..+++.+ .+..+|.+|+|+.||+|+|++++++++... . +++++|...
T Consensus 13 ~~v~~a~~g~~~l~~~---------------------~~~~~~~~lld~~m~~~~~~~~~~~lk~~~--~-~~v~~t~~~ 68 (435)
T COG3706 13 KEVATAKKGLIALAIL---------------------LDHKPDYKLLDVMMPGMDGFELCRRLKAEP--A-TVVMVTALD 68 (435)
T ss_pred hhhhhccchHHHHHHH---------------------hcCCCCeEEeecccCCcCchhHHHHHhcCC--c-ceEEEEecC
Confidence 4566689999999988 788999999999999999999999998542 2 288899999
Q ss_pred ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 153 VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 153 ~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
......+.+++|+++||+||.....+......+..
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~ 103 (435)
T COG3706 69 DSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVR 103 (435)
T ss_pred CCCcchhHHhhhhhhhccCCCChHHHHHhhhhhcc
Confidence 99999999999999999999999888776666543
No 83
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=98.05 E-value=4.6e-05 Score=58.83 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=76.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
||||||||...+..+..+|+=.|+++..+++.+.. ... ....++.+++-..-.. ...
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~---------------------~~~~~~~~~v~~g~~~-~~~ 57 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QAD---------------------WSSPWEACAVILGSCS-KLA 57 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-Hhh---------------------hhcCCcEEEEEecCch-hHH
Confidence 69999999999999999999899999888865552 222 2344555544433222 445
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
++++.+- ...+.+||+++......... ..+-+-|..|++..+|.+++++.
T Consensus 58 ~~l~~l~-~~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 58 ELLKELL-KWAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred HHHHHHH-hhCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 6666665 34589999999877655111 12666788999999999999875
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=98.00 E-value=6e-05 Score=46.04 Aligned_cols=55 Identities=38% Similarity=0.651 Sum_probs=48.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
++|+++++++..+..+...+...|+.+..+.++..+...+ ....+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELL---------------------KEEKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeccCC
Confidence 4799999999999999999998999999999999999887 445799999998764
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.40 E-value=0.0062 Score=47.60 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=79.7
Q ss_pred EEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
||++. |.|..=...+..+|+..||+|...+ ..++.++.+ .+..+|+|.+-..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a---------------------~~~~~d~V~iS~~ 59 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAA---------------------IQEDVDVIGLSSL 59 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEccc
Confidence 35555 7777777888889999999998744 467777776 5678999999887
Q ss_pred CCCCC--HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHH
Q 026247 123 MPGMT--GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 123 mp~~~--G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i 182 (241)
++..- --++++.+++.....+ .|++-+....+...++.++|+++|+..-.+.++....+
T Consensus 60 ~~~~~~~~~~~~~~L~~~~~~~i-~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 60 SGGHMTLFPEVIELLRELGAGDI-LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred chhhHHHHHHHHHHHHhcCCCCC-EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 75422 2356666775433344 45565555567788889999999999988887766544
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.33 E-value=0.014 Score=46.79 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=89.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+||+. |.|..-...+..+|+..||+|+..+ ..++.++.+ ....+|+|.+-
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a---------------------~~~~~d~V~lS 61 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA---------------------IETDADAILVS 61 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEc
Confidence 4578888 8888888999999999999999754 567777776 56789999999
Q ss_pred CCCCCCC--HHHHHHHHhhcCCCCCcEEEEecCC------ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 121 YCMPGMT--GYDLLKRLKVSSWKDVPVVVMSSEN------VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 121 ~~mp~~~--G~el~~~lr~~~~~~~pII~lsa~~------~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..+.... ..++++.++....++++|+ +.+.. ..+...++.+.|++.++....+.++....+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~L~~~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 62 SLYGHGEIDCRGLREKCIEAGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred CccccCHHHHHHHHHHHHhcCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 8887532 3467777775544566554 43332 45667789999999999988899999888887764
No 87
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.96 E-value=0.0043 Score=48.14 Aligned_cols=101 Identities=13% Similarity=0.182 Sum_probs=74.3
Q ss_pred HHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC--CCHHHHHHHHhhcC
Q 026247 62 KILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG--MTGYDLLKRLKVSS 139 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~--~~G~el~~~lr~~~ 139 (241)
..+...|...|++|+.+.+.++++..++ ....+.+|++||. ++ ....++++.++..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~--------------------~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIE--------------------SFTDIAAVVISWD-GEEEDEAQELLDKIRER- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHH--------------------CTTTEEEEEEECH-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHH--------------------hCCCeeEEEEEcc-cccchhHHHHHHHHHHh-
Confidence 4566777778999999999999999994 5678999999996 21 2245688888854
Q ss_pred CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHH-HHHHH
Q 026247 140 WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLE-KLQPR 184 (241)
Q Consensus 140 ~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~-~~i~~ 184 (241)
...+||.+++.....+.+....-..+++|+...-+..++. ..+.+
T Consensus 65 ~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~ 110 (115)
T PF03709_consen 65 NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFIARRIEA 110 (115)
T ss_dssp STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHHHHHHHH
Confidence 4789999998876555555556677889998877666654 33443
No 88
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.93 E-value=0.0016 Score=66.95 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=43.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
..+.+||||||++.++..+..+|+.+|++|..+.++ . ....||+||+|+.+
T Consensus 687 l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~---------------------~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 687 LDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------L---------------------ISQEYDIFLTDNPS 737 (894)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------c---------------------cCCCCCEEEECCCC
Confidence 456799999999999999999999999999988752 2 34569999999984
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.87 E-value=0.061 Score=42.84 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=81.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCcEEEE---ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAV----DDSLIDRKILENLLRVSSYQVTC---VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~---~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+|++. |-|..-...+..+|+..||+|.. ..+.+++++.. .+..+|+|.+-.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa---------------------~e~~adii~iSs 61 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQA---------------------VEADVHVVGVSS 61 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEcC
Confidence 455554 66777778899999999999985 44677887776 567899999877
Q ss_pred CCCC-CC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 122 CMPG-MT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 122 ~mp~-~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+.. +. --++++.|++....+++ |++-+....+...+..++|+++|+..-.+..+....+.+.+
T Consensus 62 l~~~~~~~~~~~~~~L~~~g~~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 62 LAGGHLTLVPALRKELDKLGRPDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred chhhhHHHHHHHHHHHHhcCCCCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 6643 22 23456667654433444 44454444566778999999999998888888877766644
No 90
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.62 E-value=0.04 Score=42.43 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=66.5
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC--CCHH
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG--MTGY 129 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~--~~G~ 129 (241)
|.+..=...+..+|+..||+|...+ ..++.++.+ .+..||+|.+-..+.. ....
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~---------------------~~~~pdvV~iS~~~~~~~~~~~ 68 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAA---------------------KEEDADAIGLSGLLTTHMTLMK 68 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEeccccccHHHHH
Confidence 6777778889999999999997643 456666766 5778999999887654 3345
Q ss_pred HHHHHHhhcCCC-CCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 130 DLLKRLKVSSWK-DVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 130 el~~~lr~~~~~-~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++++.+|+. .+ +++| ++.+.........+...|+|.|+..
T Consensus 69 ~~i~~l~~~-~~~~~~i-~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 69 EVIEELKEA-GLDDIPV-LVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHc-CCCCCeE-EEECCCCChhHHHHHHcCCeEEECC
Confidence 677777754 34 5555 4555544444457889999877753
No 91
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.27 E-value=0.16 Score=40.66 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=78.4
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEE---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC--HH
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCV---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT--GY 129 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~--G~ 129 (241)
|-|-.=..++..+|+..||+|... -+.++.++.. .+..+|+|-+...|...- --
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa---------------------~~~~adiVglS~l~~~~~~~~~ 70 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAA---------------------IETKADAILVSSLYGHGEIDCK 70 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEecccccCHHHHH
Confidence 445555678889999999999863 4677777776 567899999988775422 34
Q ss_pred HHHHHHhhcCCCCCcEEEEecCC---C---hHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSEN---V---PSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~---~---~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++.+.|++....++ .|++-+.. . .....++.+.|++..+......+++.+.+++.|+
T Consensus 71 ~~~~~l~~~gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 71 GLRQKCDEAGLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred HHHHHHHHCCCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 56667775544444 45565421 1 1234568999999999988889999988888764
No 92
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=95.62 E-value=0.079 Score=41.67 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=76.9
Q ss_pred cccccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 41 PQQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 41 ~~~~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+.....++.+.+.||-|........++|...|.+|+.-.+..+. -...||++|+.
T Consensus 4 p~~~~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l-------------------------p~~hYD~~Ll~ 58 (140)
T COG4999 4 PSTACLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL-------------------------PPAHYDMMLLG 58 (140)
T ss_pred cchhhhccceeEEecCccHHHHHHHHHHhcCCceEEeccccccc-------------------------Chhhhceeeec
Confidence 33444567799999999999999999999999999864433322 24469999999
Q ss_pred CCCCCCCHHHHHHH-H-hhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHH
Q 026247 121 YCMPGMTGYDLLKR-L-KVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEK 180 (241)
Q Consensus 121 ~~mp~~~G~el~~~-l-r~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~ 180 (241)
+-.+-.+...+... + |...-.+--|+.+-++ ..-...+.++.|+-++|.||++.-.|.-
T Consensus 59 vavtfr~n~tm~~~~l~~Al~mtd~vilalPs~-~qv~AeqLkQ~g~~~CllKPls~~rLlp 119 (140)
T COG4999 59 VAVTFRENLTMQHERLAKALSMTDFVILALPSH-AQVNAEQLKQDGAGACLLKPLSSTRLLP 119 (140)
T ss_pred ccccccCCchHHHHHHHHHHhhhcceEEecCcH-HHHhHHHHhhcchHhHhhCcchhhhhHH
Confidence 87765554433222 1 2111123334444333 2345667789999999999999887765
No 93
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=95.53 E-value=0.48 Score=38.36 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=82.7
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHhhcCcEEEE---ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 46 QETFHVLAV----DDSLIDRKILENLLRVSSYQVTC---VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 46 ~~~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~---~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
....|||+. |-|..-...+.+.|++.||+|.. +.+.+|+++.. -....|+|.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA---------------------~~~dv~vIg 68 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAA---------------------VEEDVDVIG 68 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHH---------------------HhcCCCEEE
Confidence 346678776 77888889999999999999985 67888888776 466788887
Q ss_pred EeCCCCC--CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 119 TDYCMPG--MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 119 lD~~mp~--~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+...--+ ...-++.+.+|+....++. ++.-..-..+...+..+.|++.++.--....+....+...+
T Consensus 69 vSsl~g~h~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 69 VSSLDGGHLTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred EEeccchHHHHHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 7643222 1123455556654434443 35556666777888889999999987777766665555544
No 94
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=95.13 E-value=0.11 Score=47.09 Aligned_cols=68 Identities=21% Similarity=0.092 Sum_probs=46.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEE-ecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVM-SSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~l-sa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
..-.+|++|..+-. .++... ..+...+|++ ....+......++..|+.+||.+|++..+|.+.+.++.
T Consensus 18 ~~~~~v~~~~~~~~----~~~~~~---~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 18 ARAPLVLVDADMAE----ACAAAG---LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred ccCCeEEECchhhh----HHHhcc---CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 34679999864411 111111 1122235544 44557889999999999999999999999999998874
No 95
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.06 E-value=0.71 Score=36.70 Aligned_cols=106 Identities=11% Similarity=0.118 Sum_probs=73.5
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEE---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-CC-HH
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCV---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-MT-GY 129 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~~-G~ 129 (241)
|-|..-..++..+|+..||+|... -+.++.++.. .+..+|+|.+..-|.. +. .-
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa---------------------~~~~adiVglS~L~t~~~~~~~ 68 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAA---------------------IETDADAILVSSLYGHGEIDCK 68 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEeccccCCHHHHH
Confidence 445555678889999999999853 4667777766 5668999999887754 32 34
Q ss_pred HHHHHHhhcCCCCCcEEEEecC------CChHHHHHHHHcCCcceEeCCCChHHHHHHH
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSE------NVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~------~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i 182 (241)
++.+.+++....+++|+ +-+. +..+...++.+.|++..+....+++++...+
T Consensus 69 ~~~~~l~~~gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 69 GLREKCDEAGLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred HHHHHHHHCCCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 56777776544465554 4333 1234556789999999998877777776554
No 96
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.97 E-value=0.29 Score=49.34 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=59.5
Q ss_pred cEEEEEeCCHH------HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 49 FHVLAVDDSLI------DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 49 ~~VLIVDDd~~------~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
++|+||+++-. -...|.+-|+..||+|..+.+..+++..+. ......+|++|+.
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 60 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE--------------------HNPRICGVIFDWD 60 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh--------------------cccceeEEEEecc
Confidence 46888877741 123456667779999999999999999883 4567899999975
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
-. ...+++.+|.. ...+||+++....
T Consensus 61 ~~---~~~~~~~~~~~-~~~~Pv~~~~~~~ 86 (713)
T PRK15399 61 EY---SLDLCSDINQL-NEYLPLYAFINTH 86 (713)
T ss_pred cc---hHHHHHHHHHh-CCCCCEEEEcCcc
Confidence 43 25578888844 4689999987644
No 97
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=94.90 E-value=0.58 Score=47.29 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=83.2
Q ss_pred cCCccEEEEE----eCCHHHHHHHHHHHhhcCcEEEE---ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 45 QQETFHVLAV----DDSLIDRKILENLLRVSSYQVTC---VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 45 ~~~~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~---~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.....+|++. |.|..-...+..+|...||+|.. ..+.+++.+.. ....+|+|
T Consensus 579 ~g~rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa---------------------~~~~a~iv 637 (714)
T PRK09426 579 EGRRPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQA---------------------VENDVHVV 637 (714)
T ss_pred cCCCceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHH---------------------HHcCCCEE
Confidence 3445677766 55666677888999999999963 34677887776 46678888
Q ss_pred EEeCCCCCC--CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 118 MTDYCMPGM--TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 118 llD~~mp~~--~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+-..+... ..-.+++.||.....+++| ++.+....+......+.|+|+||.--.+..+....+.+.+
T Consensus 638 vlcs~d~~~~e~~~~l~~~Lk~~G~~~v~v-l~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 638 GVSSLAAGHKTLVPALIEALKKLGREDIMV-VVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred EEeccchhhHHHHHHHHHHHHhcCCCCcEE-EEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 887655442 2456778888544233433 4554433444567889999999999888888877777766
No 98
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=94.61 E-value=0.61 Score=39.45 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+|++. |-|.+=..++..+|+..||+|...+ ..++.++.+ ....||+|-+-
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~---------------------~~~~~d~v~lS 140 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV---------------------KEHKPDILGLS 140 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEe
Confidence 3478887 8888888999999999999998644 466777777 67789999999
Q ss_pred CCCCCC--CHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 121 YCMPGM--TGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 121 ~~mp~~--~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..|... ...++++.+|... ..+++|++=-..... . -+...|||.|-.
T Consensus 141 ~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~-~--~~~~~GaD~~~~ 190 (201)
T cd02070 141 ALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ-E--FADEIGADGYAE 190 (201)
T ss_pred ccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH-H--HHHHcCCcEEEC
Confidence 877653 2445677777542 126666544433333 3 456779988864
No 99
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.44 E-value=0.4 Score=48.37 Aligned_cols=80 Identities=14% Similarity=0.255 Sum_probs=58.8
Q ss_pred cEEEEEeCCHH------HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 49 FHVLAVDDSLI------DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 49 ~~VLIVDDd~~------~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
++|++|+++.. -...|.+-|+..||+|..+.+..+++..+. ......+|++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 60 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIE--------------------NNARLCGVIFDWD 60 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh--------------------cccceeEEEEecc
Confidence 46788876631 134466677789999999999999999883 4567899999974
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
-- ...++..+|.. ...+||+++....
T Consensus 61 ~~---~~~~~~~~~~~-~~~~Pv~~~~~~~ 86 (714)
T PRK15400 61 KY---NLELCEEISKM-NENLPLYAFANTY 86 (714)
T ss_pred hh---hHHHHHHHHHh-CCCCCEEEEcccc
Confidence 42 24578888844 4689999987643
No 100
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=94.35 E-value=0.42 Score=41.08 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=70.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+|++. |.|.+=..++..+|+..||+|+..+ ..++.++.+ .+..||+|.+-.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~---------------------~~~~~~~V~lS~ 147 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA---------------------KEHKADIIGLSG 147 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEcc
Confidence 478887 8888888899999999999999755 467777777 677899999998
Q ss_pred CCCC-CC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHH---HHHcCCcceEeC
Q 026247 122 CMPG-MT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTM---CLEEGAEEFLLK 171 (241)
Q Consensus 122 ~mp~-~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~---a~~~Ga~dyL~K 171 (241)
.|+. +. -.++++.|+.. ..+++|++=-+..+.+...+ +...|||.|-.-
T Consensus 148 ~~~~~~~~~~~~i~~L~~~-~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 148 LLVPSLDEMVEVAEEMNRR-GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred chhccHHHHHHHHHHHHhc-CCCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 8864 22 34567777754 34677654443333333322 235799877643
No 101
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=93.77 E-value=1.2 Score=33.69 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=60.3
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEE---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC-CCCCC-CHH
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCV---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY-CMPGM-TGY 129 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~-~mp~~-~G~ 129 (241)
+-++.-...+..+|+..||+|... .+.++..+.+ ....||+|.+.. ..+.. ...
T Consensus 11 ~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~---------------------~~~~pd~V~iS~~~~~~~~~~~ 69 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEAL---------------------RAERPDVVGISVSMTPNLPEAK 69 (121)
T ss_dssp SSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHH---------------------HHTTCSEEEEEESSSTHHHHHH
T ss_pred cchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHH---------------------hcCCCcEEEEEccCcCcHHHHH
Confidence 345677788999999999999865 2346666666 566899999988 44443 245
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHH--cCCcceEe
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLE--EGAEEFLL 170 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~--~Ga~dyL~ 170 (241)
++++.+| ...++++||+=-.+ -...-..+++ .|+|..+.
T Consensus 70 ~l~~~~k-~~~p~~~iv~GG~~-~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 70 RLARAIK-ERNPNIPIVVGGPH-ATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp HHHHHHH-TTCTTSEEEEEESS-SGHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHH-hcCCCCEEEEECCc-hhcChHHHhccCcCcceecC
Confidence 6667766 34567766644433 3444444554 67775554
No 102
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=93.35 E-value=0.84 Score=38.62 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred EEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
+|++. |.|.+=..++..+|+..||+|+..+ ..++.++.+ ....||+|.+-..
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~---------------------~~~~pd~v~lS~~ 144 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV---------------------KKEKPLMLTGSAL 144 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEccc
Confidence 56655 6677777888899999999999654 556677777 6788999999988
Q ss_pred CCCC-C-HHHHHHHHhhcCC-CCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 123 MPGM-T-GYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 123 mp~~-~-G~el~~~lr~~~~-~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
|+.. . -.++++.+++... +.++|+ +-+..-... -+.+.|+|.|-.
T Consensus 145 ~~~~~~~~~~~i~~l~~~~~~~~v~i~-vGG~~~~~~--~~~~~gad~~~~ 192 (197)
T TIGR02370 145 MTTTMYGQKDINDKLKEEGYRDSVKFM-VGGAPVTQD--WADKIGADVYGE 192 (197)
T ss_pred cccCHHHHHHHHHHHHHcCCCCCCEEE-EEChhcCHH--HHHHhCCcEEeC
Confidence 7652 2 2456677775433 345554 544433332 356789998864
No 103
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.51 E-value=1.3 Score=39.04 Aligned_cols=110 Identities=21% Similarity=0.225 Sum_probs=70.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHH------hhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 48 TFHVLAVDDSLIDRKILENLL------RVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L------~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
-+++=|+.|+.....-+.+.+ -..||.|. ++.|...|.++. +-.+++|
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~----------------------~~G~~~v-- 148 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE----------------------DAGCAAV-- 148 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH----------------------HcCCCEe--
Confidence 356767766554332222222 23599876 567777776654 3467777
Q ss_pred eCCCC---------CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-----CCCChHHHHHHHHHH
Q 026247 120 DYCMP---------GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-----KPVRLSDLEKLQPRL 185 (241)
Q Consensus 120 D~~mp---------~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-----KP~~~~~L~~~i~~~ 185 (241)
|| +..-.++++.+++. .++|||+=..-...+++.++++.|+++.+. |.-++..........
T Consensus 149 ---mPlg~pIGsg~Gi~~~~~I~~I~e~--~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~A 223 (248)
T cd04728 149 ---MPLGSPIGSGQGLLNPYNLRIIIER--ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLA 223 (248)
T ss_pred ---CCCCcCCCCCCCCCCHHHHHHHHHh--CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHH
Confidence 55 22126788888753 478999888888999999999999999854 433444444444443
Q ss_pred h
Q 026247 186 L 186 (241)
Q Consensus 186 l 186 (241)
+
T Consensus 224 v 224 (248)
T cd04728 224 V 224 (248)
T ss_pred H
Confidence 3
No 104
>PRK00208 thiG thiazole synthase; Reviewed
Probab=90.99 E-value=3.2 Score=36.67 Aligned_cols=110 Identities=21% Similarity=0.217 Sum_probs=70.5
Q ss_pred ccEEEEEeCCHHHHHHHHH------HHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 48 TFHVLAVDDSLIDRKILEN------LLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~------~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
=+++=|+.|+.....-+.. .|-..||.|. |+.|...|.++. +-.+++|
T Consensus 93 ~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~----------------------~~G~~~v-- 148 (250)
T PRK00208 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE----------------------EAGCAAV-- 148 (250)
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH----------------------HcCCCEe--
Confidence 3577777665533222222 2223599876 567777776654 3467777
Q ss_pred eCCCC---------CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-----CCCChHHHHHHHHHH
Q 026247 120 DYCMP---------GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-----KPVRLSDLEKLQPRL 185 (241)
Q Consensus 120 D~~mp---------~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-----KP~~~~~L~~~i~~~ 185 (241)
|| +..-.++++.+++. .++|||+=..-...+++.++++.|+++.+. |.-++..........
T Consensus 149 ---mPlg~pIGsg~gi~~~~~i~~i~e~--~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~A 223 (250)
T PRK00208 149 ---MPLGAPIGSGLGLLNPYNLRIIIEQ--ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLA 223 (250)
T ss_pred ---CCCCcCCCCCCCCCCHHHHHHHHHh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHH
Confidence 55 22125778888753 478999888889999999999999999854 534444544444443
Q ss_pred h
Q 026247 186 L 186 (241)
Q Consensus 186 l 186 (241)
+
T Consensus 224 v 224 (250)
T PRK00208 224 V 224 (250)
T ss_pred H
Confidence 3
No 105
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.61 E-value=3.8 Score=31.66 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcCcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC-CHHHHHHHH
Q 026247 59 IDRKILENLLRVSSYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM-TGYDLLKRL 135 (241)
Q Consensus 59 ~~~~~l~~~L~~~g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~-~G~el~~~l 135 (241)
.-...+..+|+..|+.+.. ....++.++.+. ....||+|.+....+.. ....+++.+
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~--------------------~~~~pdiv~~S~~~~~~~~~~~~~~~i 62 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIK--------------------ELLKPDVVGISLMTSAIYEALELAKIA 62 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHH--------------------HhcCCCEEEEeeccccHHHHHHHHHHH
Confidence 3456778889888987664 345555666651 22689999999855543 356688888
Q ss_pred hhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 136 KVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 136 r~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|+ ..++++||+--.+.... -...+.....||+..--....+...+..+.+
T Consensus 63 k~-~~p~~~iv~GG~~~t~~-p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~ 112 (127)
T cd02068 63 KE-VLPNVIVVVGGPHATFF-PEEILEEPGVDFVVIGEGEETFLKLLEELEE 112 (127)
T ss_pred HH-HCCCCEEEECCcchhhC-HHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 85 44677777654443322 2222333445788887666667777776654
No 106
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.87 E-value=5.9 Score=35.00 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=53.0
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC-ChHHHHHHHHHH
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV-RLSDLEKLQPRL 185 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~~ 185 (241)
....||.|++|++--..|--++...++... ..-.|+|=+.. .+...+.++++.|+++++.--+ +.++...++...
T Consensus 37 a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~-~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 37 GLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT-NEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC-CCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 445699999999998888878777776542 33445655544 5688899999999999977544 555555544443
No 107
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=88.82 E-value=6.1 Score=35.21 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=53.5
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
....||.|++|.+--..+--++...++... ....|+|-+ ...+...+.++++.||++.+.--+...+=.+.+.+..+.
T Consensus 36 a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRv-p~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 36 ATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRP-VEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred HHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEEC-CCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 344599999999998888777777776543 233455555 455678889999999999988655444333334444443
No 108
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=88.57 E-value=7.4 Score=34.22 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=52.7
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC-ChHHHHHHHHH
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV-RLSDLEKLQPR 184 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~ 184 (241)
....||.|++|++--.++--++...++... ..-.|+|=+. ..+...+.++++.|+++++.--+ +.++...++..
T Consensus 30 a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp-~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 30 GLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPP-WNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred HhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECC-CCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 345699999999998888888777777543 2334565554 45688899999999999987544 45555554443
No 109
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.31 E-value=6.3 Score=34.60 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=55.3
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceE-eCCCChHHHHHHHHHHh
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFL-LKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL-~KP~~~~~L~~~i~~~l 186 (241)
....||.|++|++-...+.-++...++.. .....++|=+.+ .+...+.++++.|+++.+ +|--+.+++..++..+.
T Consensus 30 ~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~-~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 30 AGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI-GDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC-CCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 45569999999998888888887777653 333455665544 456788999999999985 45667777777666554
No 110
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.19 E-value=13 Score=30.84 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=43.0
Q ss_pred CCCccEEEEeCCCCCC--------CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGM--------TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~--------~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
...+|.|.+.--.|.. .|++.+++++.. .+.+||++..+- +.+.+..++.+|++++..
T Consensus 122 ~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 122 AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA-VGDIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-cCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 3468999887555543 368888988753 345898877665 578888999999998864
No 111
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=87.18 E-value=2.3 Score=36.10 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=53.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC--CCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC--MPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~--mp~~ 126 (241)
++||+||..-.+--.|.++|++.|.+|.+..+....+..+ ....||.|++.-. -|.-
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~---------------------~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI---------------------EALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH---------------------hhcCCCEEEEcCCCCChHH
Confidence 5899999999999999999999998888776653333344 4456899998742 2222
Q ss_pred CH--HHHHHHHhhcCCCCCcEEEEec
Q 026247 127 TG--YDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 127 ~G--~el~~~lr~~~~~~~pII~lsa 150 (241)
.| .++++++ ...+||+-+.=
T Consensus 61 ~G~~~~~i~~~----~~~~PiLGVCL 82 (191)
T COG0512 61 AGISLELIRRF----AGRIPILGVCL 82 (191)
T ss_pred cchHHHHHHHh----cCCCCEEEECc
Confidence 22 3444443 25689987753
No 112
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=87.09 E-value=21 Score=31.53 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC-C--CCCCCHHHHHHHH
Q 026247 60 DRKILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY-C--MPGMTGYDLLKRL 135 (241)
Q Consensus 60 ~~~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~-~--mp~~~G~el~~~l 135 (241)
....+.+.....|.++ ..+.+.+++.... ...+|+|-+.- . .-..+ ++...++
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~----------------------~~gadiIgin~rdl~~~~~d-~~~~~~l 204 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERAL----------------------KLGAPLIGINNRNLKTFEVD-LETTERL 204 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH----------------------HcCCCEEEECCCCcccccCC-HHHHHHH
Confidence 3444444445678775 4688998886654 23567776542 1 11222 5566666
Q ss_pred hhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 136 KVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 136 r~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
........++|..++-.+.+.+.++++.|+++++.
T Consensus 205 ~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 205 APLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred HHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 53321245888999988999999999999999865
No 113
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.04 E-value=11 Score=28.21 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEEC-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVD-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.+|.+||.++..... +...|+.+...+ .-.+.++.+ .-...+.+++...-. ..
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a---------------------~i~~a~~vv~~~~~d-~~ 75 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERA---------------------GIEKADAVVILTDDD-EE 75 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHT---------------------TGGCESEEEEESSSH-HH
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhc---------------------CccccCEEEEccCCH-HH
Confidence 589999999877443 344667665532 223445554 234678888876532 33
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-+.++..+|+ ..+..+|++.... ......+.++|++..+.
T Consensus 76 n~~~~~~~r~-~~~~~~ii~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 76 NLLIALLARE-LNPDIRIIARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp HHHHHHHHHH-HTTTSEEEEEESS--HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHH-HCCCCeEEEEECC--HHHHHHHHHCCcCEEEC
Confidence 4566667774 3466777766553 56667778899987653
No 114
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.78 E-value=13 Score=27.84 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=61.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-cCcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRV-SSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~-~g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+||.||---..-+..+..+... .++++.. ++...+..+.+. ...... +..|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~--------------------~~~~~~-~~~~------ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA--------------------EKYGIP-VYTD------ 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH--------------------HHTTSE-EESS------
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH--------------------HHhccc-chhH------
Confidence 4677777766767777777765 4666653 443333223221 122222 4443
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
.+.+-.....++-+|........+....+++.|..=|+-||+ +.+++.+++....
T Consensus 54 -----~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 54 -----LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp -----HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred -----HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 122222222333333333334577889999999999999999 7778777766654
No 115
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.84 E-value=16 Score=30.97 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=56.2
Q ss_pred HHHHHhh-cCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-------CCCCCHHHHHHH
Q 026247 64 LENLLRV-SSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC-------MPGMTGYDLLKR 134 (241)
Q Consensus 64 l~~~L~~-~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~-------mp~~~G~el~~~ 134 (241)
+.+..++ .++.+. .+.+.+++.... ...+|+|.+... .....+++++++
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~----------------------~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~ 167 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQ----------------------KLGFDFIGTTLSGYTEETKKPEEPDFALLKE 167 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHH----------------------HcCCCEEEcCCceeecCCCCCCCcCHHHHHH
Confidence 3344455 565543 567788876554 345787765321 122335788888
Q ss_pred HhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 135 LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 135 lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++... .+||++..+-.+.+.+.++++.|+++++.=
T Consensus 168 i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 168 LLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 88532 689998888878999999999999988653
No 116
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=84.47 E-value=8.7 Score=29.00 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=52.1
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC-HHH
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT-GYD 130 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~-G~e 130 (241)
|.+..-...+..+++..||++...+ ..++..+.+ ....||+|.+...+.... .+.
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i---------------------~~~~pdiV~iS~~~~~~~~~~~ 68 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA---------------------KEEDADVVGLSALSTTHMEAMK 68 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH---------------------HHcCCCEEEEecchHhHHHHHH
Confidence 6677778888999999999988654 555566666 457899999998775532 455
Q ss_pred HHHHHhhcCCC-CCcEEEEecC
Q 026247 131 LLKRLKVSSWK-DVPVVVMSSE 151 (241)
Q Consensus 131 l~~~lr~~~~~-~~pII~lsa~ 151 (241)
.+..+++.. + +++|++=-.+
T Consensus 69 ~~~~~~~~~-p~~~~ivvGG~~ 89 (125)
T cd02065 69 LVIEALKEL-GIDIPVVVGGAH 89 (125)
T ss_pred HHHHHHHhc-CCCCeEEEeCCc
Confidence 566666433 4 6777655333
No 117
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.23 E-value=3.8 Score=36.28 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=44.9
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecC------CChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSE------NVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~------~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+.+++++++|. ..+++|+|+||=+ +-.....+|.++|+++.|.-....++....+..+..
T Consensus 75 ~~~~~~~~~r~-~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 75 DVFELVREIRE-KDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHHh-cCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 34777777773 3467899988844 445668899999999999987888887777666543
No 118
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=82.58 E-value=21 Score=33.02 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=36.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
-|++++--.....-|..+++.+- ..+|||+--.........+.+. ..+++..|-+.++|...+..++.
T Consensus 320 aDi~~v~~S~~e~~g~~~lEAma----~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 320 ADIAFVGGSLVKRGGHNPLEPAA----FGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred CCEEEECCCcCCCCCCCHHHHHH----hCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 46655522221223444444443 4678875322222333333322 22567778899999999998875
No 119
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=82.45 E-value=17 Score=35.13 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHhhcC-cEEEEEC------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC-H
Q 026247 57 SLIDRKILENLLRVSS-YQVTCVD------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT-G 128 (241)
Q Consensus 57 d~~~~~~l~~~L~~~g-~~V~~~~------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~-G 128 (241)
.|.-...+...|+..| ++|..++ +.++..+.+ ....||+|.+-..-+... .
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l---------------------~~~~pdvVgis~~t~~~~~a 79 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERL---------------------RAHCPDLVLITAITPAIYIA 79 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHH---------------------HhcCcCEEEEecCcccHHHH
Confidence 4667788999998899 6887643 233344445 456899999976655443 3
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHH-cCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLE-EGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~-~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.++++.+|. ..|+++||+=-.+... .-.+++. ....||+..--....+.+++..+..+.
T Consensus 80 ~~~~~~~k~-~~P~~~iV~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g~ 139 (497)
T TIGR02026 80 CETLKFARE-RLPNAIIVLGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALENHN 139 (497)
T ss_pred HHHHHHHHH-HCCCCEEEEcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcCC
Confidence 467777774 3477777655444332 2234443 445679998888788888887776543
No 120
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.44 E-value=17 Score=26.77 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=50.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEE--CCH-HHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCV--DSG-DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~--~~~-~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+||||-..+.....++..++..|+..... ..+ ......+.. .-...|+||+=...-..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~-------------------~i~~aD~VIv~t~~vsH 61 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPS-------------------KIKKADLVIVFTDYVSH 61 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHH-------------------hcCCCCEEEEEeCCcCh
Confidence 58999998888899999999999988877 111 111111200 12356888776655554
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
+-...++..- ...++|+++.-+.+
T Consensus 62 ~~~~~vk~~a--kk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 62 NAMWKVKKAA--KKYGIPIIYSRSRG 85 (97)
T ss_pred HHHHHHHHHH--HHcCCcEEEECCCC
Confidence 4444444432 22478888765444
No 121
>PRK13566 anthranilate synthase; Provisional
Probab=81.96 E-value=4.9 Score=40.78 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=55.4
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe--C
Q 026247 44 QQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD--Y 121 (241)
Q Consensus 44 ~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD--~ 121 (241)
....+.+|||||....+...+.++|+..|++|..+..... .+.+ ....||.||+- -
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~---------------------~~~~~DgVVLsgGp 579 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEML---------------------DRVNPDLVVLSPGP 579 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHh---------------------hhcCCCEEEECCCC
Confidence 4455679999999988889999999999999987665432 1222 22358887762 1
Q ss_pred CCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHH
Q 026247 122 CMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMC 160 (241)
Q Consensus 122 ~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a 160 (241)
..|. ..-.++++++. ...+||+-+.-- .+.+..+
T Consensus 580 gsp~d~~~~~lI~~a~---~~~iPILGIClG--~QlLa~a 614 (720)
T PRK13566 580 GRPSDFDCKATIDAAL---ARNLPIFGVCLG--LQAIVEA 614 (720)
T ss_pred CChhhCCcHHHHHHHH---HCCCcEEEEehh--HHHHHHH
Confidence 1111 11234444433 246899877642 3444444
No 122
>PRK12704 phosphodiesterase; Provisional
Probab=81.78 E-value=1.9 Score=42.07 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCc-EEEEecCCChH--HHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 142 DVP-VVVMSSENVPS--RVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 142 ~~p-II~lsa~~~~~--~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
++| +|++|+++... ....+++.|+.|+..||++++++...+..-+
T Consensus 248 dtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~ 295 (520)
T PRK12704 248 DTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEV 295 (520)
T ss_pred CCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence 455 88899988765 8899999999999999999999987766544
No 123
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=81.73 E-value=13 Score=37.30 Aligned_cols=102 Identities=16% Similarity=0.141 Sum_probs=71.8
Q ss_pred HHHHHHhhcCcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-----CCCHHHHHHHH
Q 026247 63 ILENLLRVSSYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-----GMTGYDLLKRL 135 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-----~~~G~el~~~l 135 (241)
.....|+..|+.+.. ++++-..+.++ ..-.||.|=+|-.+- +.....+++.|
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l---------------------~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~ 740 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRL---------------------VSLPVTEIKIDKSFVDRCLTEKRILALLEAI 740 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHH---------------------hhCCCCEEEECHHHHhhcccChhHHHHHHHH
Confidence 344567789998754 78888888888 566799999997552 11233455555
Q ss_pred hhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHHHHHHh
Q 026247 136 KVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 136 r~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~i~~~l 186 (241)
... ...++.+ +..+-.+.+....+.+.|++ .|+.||...++|...++.+.
T Consensus 741 ~~~~~~~~i~v-ia~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~~ 795 (799)
T PRK11359 741 TSIGQSLNLTV-VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVL 795 (799)
T ss_pred HHHHHHCCCeE-EEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhcc
Confidence 422 1234444 46677888899999999998 45889999999998777653
No 124
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=81.63 E-value=18 Score=30.38 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=60.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC--cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS--YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g--~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
--+++|+.+++..+..+++++..+| |.|....+.+++++-+. .....|.++..+....+
T Consensus 31 a~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k-------------------~~G~vvhLtmyga~~~~ 91 (176)
T PRK03958 31 ADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWK-------------------DGGIVVHLTMYGENIQD 91 (176)
T ss_pred CceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHH-------------------hCCcEEEEEEecCCccc
Confidence 3479999999999999999999887 77999999999999883 13567899999988866
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEE-ecCCChHHH
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVM-SSENVPSRV 157 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~l-sa~~~~~~~ 157 (241)
.++-++..... .-|++++ -++.-...+
T Consensus 92 --~~~~ir~~~~~---~~p~LIvvGg~gvp~ev 119 (176)
T PRK03958 92 --VEPEIREAHRK---GEPLLIVVGAEKVPREV 119 (176)
T ss_pred --hHHHHHHhhcc---CCcEEEEEcCCCCCHHH
Confidence 44433332111 3354444 454444444
No 125
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=81.35 E-value=41 Score=30.81 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=43.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce-EeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF-LLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy-L~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++--...+.-|.-+++.+- ..+|||+... +. ..+.+..|.++| +..|.+.++|.+.+.+++..
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma----~G~PVI~s~~-gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMA----AGKPVLASTK-GG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHH----cCCCEEEeCC-CC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 57777643333333455555554 4689876433 22 233456788898 56789999999999998853
No 126
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.16 E-value=28 Score=33.27 Aligned_cols=102 Identities=18% Similarity=0.085 Sum_probs=56.8
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDR---KILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~---~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+.+|++++-|..-. ..+.......|+.+..+.+..++.+.+ ....+|+||+|. +
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l---------------------~~~~~D~VLIDT--a 308 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETL---------------------ARDGSELILIDT--A 308 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHH---------------------HhCCCCEEEEeC--C
Confidence 45788888776322 233333344566665555566666666 346799999997 4
Q ss_pred CCCH--HHHHHHHhh---cC---CCCCcEEEEecCCChHHHHHHH----HcCCcce-EeCC
Q 026247 125 GMTG--YDLLKRLKV---SS---WKDVPVVVMSSENVPSRVTMCL----EEGAEEF-LLKP 172 (241)
Q Consensus 125 ~~~G--~el~~~lr~---~~---~~~~pII~lsa~~~~~~~~~a~----~~Ga~dy-L~KP 172 (241)
+... .+.++.+.. .. .+.-.++++++.........+. ..|.++. ++|=
T Consensus 309 Gr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKL 369 (432)
T PRK12724 309 GYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKL 369 (432)
T ss_pred CCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 4321 223333321 11 1234577777776665544443 3667776 4453
No 127
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=80.52 E-value=16 Score=32.00 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=67.3
Q ss_pred HHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-----CCHHHHHHH
Q 026247 62 KILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-----MTGYDLLKR 134 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-----~~G~el~~~ 134 (241)
..+-..|+..|+.+. -+++|-..+.++ ..-+||.|=+|-.+-. .....+++.
T Consensus 139 ~~~l~~L~~~G~~ialDDFGtG~ssl~~L---------------------~~l~~d~iKID~~fi~~i~~~~~~~~iv~~ 197 (256)
T COG2200 139 LALLRQLRELGVRIALDDFGTGYSSLSYL---------------------KRLPPDILKIDRSFVRDLETDARDQAIVRA 197 (256)
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHH---------------------hhCCCCeEEECHHHHhhcccCcchHHHHHH
Confidence 334455677897654 699999999999 6678999999975522 223345555
Q ss_pred Hhhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHHHH
Q 026247 135 LKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 135 lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~i~ 183 (241)
|-.. ..-.+.+| .-+-.+.+....+.+.|++ .|+.||...+++...+.
T Consensus 198 iv~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 198 IVALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 5322 11244444 4455667888888999998 45889998877665543
No 128
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=79.77 E-value=9.9 Score=31.78 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=59.1
Q ss_pred HHHHHHhhcCcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-----CCHHHHHHHH
Q 026247 63 ILENLLRVSSYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-----MTGYDLLKRL 135 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-----~~G~el~~~l 135 (241)
.....|+..|+.+.. ++.+...+.++ ..-.||.|-+|..+-. .....+++.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l---------------------~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l 195 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYL---------------------KRLPVDLLKIDKSFVRDLQTDPEDEAIVQSI 195 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHH---------------------HhCCCCeEEECHHHHhhhccChhHHHHHHHH
Confidence 344566778987754 66677777777 4567999999975432 1133445554
Q ss_pred hhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCCh
Q 026247 136 KVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRL 175 (241)
Q Consensus 136 r~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~ 175 (241)
... ....+.+ +.++-.+.+....+.+.|++ .|+.||...
T Consensus 196 ~~~~~~~~~~v-ia~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 196 IELAQKLGLQV-VAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHCCCeE-EEecCCCHHHHHHHHHcCCCEEeeceeccCCCC
Confidence 432 1223444 56777888899999999997 346777654
No 129
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.93 E-value=26 Score=33.22 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=57.1
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 47 ETFHVLAVDDSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 47 ~~~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.+.+|.+|+-|+.- ...+..+-+..|+.+..+.+..+....+. ....+|+||+|.
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~--------------------~~~~~DlVlIDt-- 307 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE--------------------QLRDCDVILIDT-- 307 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH--------------------HhCCCCEEEEeC--
Confidence 45689999988742 23344444456777776777766665552 223589999996
Q ss_pred CCCCH-----HHHHHHHhh-cCCCCCcEEEEecCCChHHHHHHH----HcCCcce-EeC
Q 026247 124 PGMTG-----YDLLKRLKV-SSWKDVPVVVMSSENVPSRVTMCL----EEGAEEF-LLK 171 (241)
Q Consensus 124 p~~~G-----~el~~~lr~-~~~~~~pII~lsa~~~~~~~~~a~----~~Ga~dy-L~K 171 (241)
||... .+.+..+-. ...+.-.++++++........+.. ..|.+.+ ++|
T Consensus 308 ~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 308 AGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 33322 223333322 122323367777766655544432 4466555 455
No 130
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=78.89 E-value=8.5 Score=33.94 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=44.2
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCC------hHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENV------PSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~------~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+.+++++.+|. ...++|++.|+-+.. .....++.++|++++|.-....++....+..+..
T Consensus 73 ~~~~~v~~ir~-~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 73 KCFELLKKVRQ-KHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred HHHHHHHHHHh-cCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHH
Confidence 35667777773 225789887776654 5678899999999999987777887776666644
No 131
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.81 E-value=41 Score=28.85 Aligned_cols=96 Identities=13% Similarity=0.207 Sum_probs=59.3
Q ss_pred HHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCc
Q 026247 66 NLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVP 144 (241)
Q Consensus 66 ~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~p 144 (241)
+.|...+. -|....+.+++++..+.+ .+.-+++|=+-+. .-+|++.++.++.. ++++-
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al------------------~~~Gi~~iEitl~--~~~~~~~I~~l~~~-~p~~~ 68 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKAL------------------VAGGLPVLEVTLR--TPAALEAIRLIAKE-VPEAL 68 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHH------------------HHcCCCEEEEecC--CccHHHHHHHHHHH-CCCCE
Confidence 44555564 345567888888877443 3344565544444 44799999999853 45533
Q ss_pred EEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHH
Q 026247 145 VVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 145 II~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~ 184 (241)
|- .-.--+.+....++++||+ |++-|....++.+...+
T Consensus 69 IG-AGTVl~~~~a~~a~~aGA~-FivsP~~~~~vi~~a~~ 106 (212)
T PRK05718 69 IG-AGTVLNPEQLAQAIEAGAQ-FIVSPGLTPPLLKAAQE 106 (212)
T ss_pred EE-EeeccCHHHHHHHHHcCCC-EEECCCCCHHHHHHHHH
Confidence 32 3233456888899999996 77777766666554433
No 132
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=78.67 E-value=23 Score=29.24 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=41.6
Q ss_pred CCCccEEEEeCCCCC--------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPG--------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~--------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
....|.|.++--.|. ..|++.++++... .+.+||+++-+- ..+.+.++++.|++++..
T Consensus 114 ~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~-~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 114 AEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT-SIDIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-cCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 356899987765542 2378888888743 346898877554 578888899999987753
No 133
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=78.14 E-value=8.7 Score=32.12 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=59.0
Q ss_pred HHHHHhhcCcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-----CCHHHHHHHHh
Q 026247 64 LENLLRVSSYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-----MTGYDLLKRLK 136 (241)
Q Consensus 64 l~~~L~~~g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-----~~G~el~~~lr 136 (241)
....|+..|+.+.. ++.+...++.+ ..-.||.|-+|..+.. .....+++.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l---------------------~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~ 195 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYL---------------------KRLPVDYLKIDRSFVRDIETDPEDRAIVRAII 195 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHH---------------------HhCCCCEEEECHHHHHhHhcChhhHHHHHHHH
Confidence 44556678988764 56777777777 4557999999975532 23345555554
Q ss_pred hc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCCh
Q 026247 137 VS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRL 175 (241)
Q Consensus 137 ~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~ 175 (241)
.. ....+++ +.+.-.+.+....+.+.|++ .|+.||...
T Consensus 196 ~~~~~~~~~v-ia~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 196 ALAHSLGLKV-VAEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHCCCeE-EEEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 32 1234444 57787889999999999996 346677654
No 134
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=77.99 E-value=23 Score=31.63 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=53.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
.|-+.=.++.....+..+|....|.+..+.++++.++++.. ....+|++++...... .
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~-------------------~~e~iDCLvle~~~~~---~ 59 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQ-------------------HREQIDCLVLEQSPLL---P 59 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCC-------------------TTTT-SEEEEETTSTT---H
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHh-------------------chhccCEEEEecCCCc---H
Confidence 45555567778888888998888999999999999999931 4568999999986544 5
Q ss_pred HHHHHHhhcCCCCCcEEEEecC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~ 151 (241)
.+...+++.+ --.|+|++...
T Consensus 60 ~~~~~L~e~g-~LLPaVil~~~ 80 (283)
T PF07688_consen 60 PLFNQLYEQG-ILLPAVILGSS 80 (283)
T ss_dssp HHHHHHHHCT-----EEEES--
T ss_pred HHHHHHHHcC-ccccEEEEecC
Confidence 6777787543 56898888653
No 135
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=77.96 E-value=42 Score=28.42 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcC-cEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC-C------CCCCCHHH
Q 026247 60 DRKILENLLRVSS-YQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY-C------MPGMTGYD 130 (241)
Q Consensus 60 ~~~~l~~~L~~~g-~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~-~------mp~~~G~e 130 (241)
....++. +++.| ..+ ..+.+.+++.... ...+|+|.+.. . .....+++
T Consensus 111 ~~~~i~~-~~~~g~~~iiv~v~t~~ea~~a~----------------------~~G~d~i~~~~~g~t~~~~~~~~~~~~ 167 (219)
T cd04729 111 LAELIKR-IHEEYNCLLMADISTLEEALNAA----------------------KLGFDIIGTTLSGYTEETAKTEDPDFE 167 (219)
T ss_pred HHHHHHH-HHHHhCCeEEEECCCHHHHHHHH----------------------HcCCCEEEccCccccccccCCCCCCHH
Confidence 3333333 33344 443 3567788876654 34577775421 1 11234578
Q ss_pred HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 131 LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+++.++... ++||++..+-.+.+.+.+++..|+++++.-
T Consensus 168 ~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 168 LLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 888888532 689998888778999999999999988763
No 136
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=77.86 E-value=24 Score=31.65 Aligned_cols=65 Identities=12% Similarity=0.212 Sum_probs=43.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++=- ..+.-|..+++.+. ..+|||+ |..+. ..+.+..|..+++..|.+.+++...+..++.
T Consensus 273 adi~v~pS-~~Eg~~~~~lEAma----~G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 273 LDLFVLPS-LAEGISNTILEAMA----SGLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred cCEEEecc-ccccCchHHHHHHH----cCCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46665422 22334666766665 4689876 33322 3345567888999999999999999998874
No 137
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=77.75 E-value=9.3 Score=31.83 Aligned_cols=30 Identities=17% Similarity=0.005 Sum_probs=26.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
|||||..-.+-..+.++|+..|+.+....+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~ 31 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRN 31 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEEC
Confidence 899999999999999999999998887664
No 138
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=77.15 E-value=19 Score=31.66 Aligned_cols=99 Identities=20% Similarity=0.161 Sum_probs=66.0
Q ss_pred ccEEEEEeCCHH------HHHHHHHHHhhcCcEEEEEC--CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 48 TFHVLAVDDSLI------DRKILENLLRVSSYQVTCVD--SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 48 ~~~VLIVDDd~~------~~~~l~~~L~~~g~~V~~~~--~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
-+++=|+-|+.. -...-.+.|-..||.|.... |.--|.++. +- =-..+|
T Consensus 100 wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLe----------------------e~-GcaavM 156 (262)
T COG2022 100 WIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLE----------------------EA-GCAAVM 156 (262)
T ss_pred eEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHH----------------------hc-CceEec
Confidence 346666655433 23334556667899997544 443443332 11 135677
Q ss_pred eCCCCCCCHH-----HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 120 DYCMPGMTGY-----DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 120 D~~mp~~~G~-----el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
-|.-|-.+|. ..++.|++. .++|||+=.+-+...+...+++.|+|+.|.-
T Consensus 157 Pl~aPIGSg~G~~n~~~l~iiie~--a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 157 PLGAPIGSGLGLQNPYNLEIIIEE--ADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred cccccccCCcCcCCHHHHHHHHHh--CCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 8887866654 456667643 3899999999999999999999999999864
No 139
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=77.01 E-value=35 Score=32.19 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=43.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc---CCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE---GAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~---Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++=-. .+.-|+.+++.+- ..+|||+....+ ..+.+.. |-.+|+..|-+.+++.+.+.+++..
T Consensus 332 aDv~V~pS~-~E~~g~~vlEAmA----~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 332 GDVFVMPSE-SETLGFVVLEAMA----SGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD 400 (465)
T ss_pred CCEEEECCc-ccccCcHHHHHHH----cCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 466665322 2334555666554 468997543322 2233445 8899999999999999999998853
No 140
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=76.94 E-value=42 Score=28.44 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=42.9
Q ss_pred CCCcc-EEEEeCCCCCC-CH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVN-LIMTDYCMPGM-TG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~D-lVllD~~mp~~-~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
...++ ++++|+.--++ .| +++++.++.. ..+||++-..-.+.+++.+++..|+++++.
T Consensus 156 ~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~--~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 156 ELGLEGIIYTDISRDGTLSGPNFELTKELVKA--VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred hCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh--CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34456 77788754332 22 6778888743 578998888888899999999999999875
No 141
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=76.89 E-value=49 Score=29.52 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=73.0
Q ss_pred cEEEEEeCCHH------HHHHHHHHHhhcCcEEEEE--CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 49 FHVLAVDDSLI------DRKILENLLRVSSYQVTCV--DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 49 ~~VLIVDDd~~------~~~~l~~~L~~~g~~V~~~--~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+++=|+-|+.. -...-.+.|-..||.|... .|.--|.++. +-- -..+|-
T Consensus 108 IKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLe----------------------d~G-c~aVMP 164 (267)
T CHL00162 108 VKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLE----------------------DIG-CATVMP 164 (267)
T ss_pred EEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHH----------------------HcC-CeEEee
Confidence 46666643322 2222334455689999754 4444454433 111 245677
Q ss_pred CCCCCCCHH-----HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE-----eCCCChHHHHHHHHHHh
Q 026247 121 YCMPGMTGY-----DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL-----LKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 121 ~~mp~~~G~-----el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL-----~KP~~~~~L~~~i~~~l 186 (241)
+.-|-.+|. ..++.|++. +++|||+=.+-...+++..+++.|+++.+ .|--++.++...+....
T Consensus 165 lgsPIGSg~Gl~n~~~l~~i~e~--~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV 238 (267)
T CHL00162 165 LGSPIGSGQGLQNLLNLQIIIEN--AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238 (267)
T ss_pred ccCcccCCCCCCCHHHHHHHHHc--CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHH
Confidence 777754443 456667643 57999999999999999999999999884 56677777777666654
No 142
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=76.76 E-value=14 Score=32.55 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=56.6
Q ss_pred cEEEEEeCCHHH------HHHHHHHHhhcCcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 49 FHVLAVDDSLID------RKILENLLRVSSYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 49 ~~VLIVDDd~~~------~~~l~~~L~~~g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+++=|+.|+... ...-.+.|-..||.|.. ..|.--|.++. +-- -..+|-
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~----------------------d~G-caavMP 150 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE----------------------DAG-CAAVMP 150 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHH----------------------HTT--SEBEE
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHH----------------------HCC-CCEEEe
Confidence 466666655432 22334556678999974 44555554443 111 245677
Q ss_pred CCCCCCCHH-----HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 121 YCMPGMTGY-----DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 121 ~~mp~~~G~-----el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
|.-|-.+|. ..++.|+... ++|||+=.+-+...+...+++.|+|+.|.-
T Consensus 151 lgsPIGSg~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 151 LGSPIGSGRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp BSSSTTT---SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred cccccccCcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 777765554 4667777543 899999999999999999999999999864
No 143
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.42 E-value=34 Score=30.76 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=60.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhh---cC--cEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRV---SS--YQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~---~g--~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.|||-|+|-... .+...+.. .. ..+ +.+.+.+++.+.+ +..+|+|++|-..
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~----------------------~agaDiI~LDn~~ 212 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAA----------------------KAGADIIMLDNMT 212 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH----------------------HcCcCEEEECCCC
Confidence 388888886655 45555532 21 223 4588999999987 3457999999654
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
|. +=-++.+.++......-..+..|+--+.+.+.+..+.|+|.+
T Consensus 213 ~e-~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 213 PE-EIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred HH-HHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEE
Confidence 43 222333434432222234566787888899999999999754
No 144
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.39 E-value=24 Score=29.35 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=53.5
Q ss_pred hcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEE
Q 026247 70 VSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 70 ~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~l 148 (241)
..|..+ ..+.+.+++.+.+ ...+|.|-++- .+.. |.++++.++. ..+.+|++++
T Consensus 95 ~~~~~~i~gv~t~~e~~~A~----------------------~~Gad~i~~~p-~~~~-g~~~~~~l~~-~~~~~p~~a~ 149 (190)
T cd00452 95 RAGIPLLPGVATPTEIMQAL----------------------ELGADIVKLFP-AEAV-GPAYIKALKG-PFPQVRFMPT 149 (190)
T ss_pred HcCCcEECCcCCHHHHHHHH----------------------HCCCCEEEEcC-Cccc-CHHHHHHHHh-hCCCCeEEEe
Confidence 344433 3566888888776 34678888854 3333 9999999984 4456888776
Q ss_pred ecCCChHHHHHHHHcCCcceEeC
Q 026247 149 SSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 149 sa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
-+- +.+...+.+++|++..-.-
T Consensus 150 GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 150 GGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CCC-CHHHHHHHHHCCCEEEEEc
Confidence 654 7888999999998877543
No 145
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.36 E-value=13 Score=32.33 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCC------hHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENV------PSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~------~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++++++.+|.. ..+|+++|+-... ......+.++|+++.+.-....+++...+..+..
T Consensus 64 ~~~~~~~vr~~--~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 64 VLELVKEIRKK--NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHhhc--CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 56666777632 3689888877543 6678889999999999865566777666666553
No 146
>PRK10060 RNase II stability modulator; Provisional
Probab=75.87 E-value=25 Score=35.03 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=71.0
Q ss_pred HHHHHHhhcCcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC----C-CCCHHHHHHHH
Q 026247 63 ILENLLRVSSYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM----P-GMTGYDLLKRL 135 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m----p-~~~G~el~~~l 135 (241)
.+...|+..|+.+.. +++|-..+.+| ..-++|.|=+|-.+ . +.....+++.|
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L---------------------~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~i 603 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQL---------------------ARFPIDAIKLDQSFVRDIHKQPVSQSLVRAI 603 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHH---------------------HhCCCCEEEECHHHHhccccCcchHHHHHHH
Confidence 344567789988764 88999999998 56789999999533 2 23345555555
Q ss_pred hhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHHHHHHh
Q 026247 136 KVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 136 r~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~i~~~l 186 (241)
-.. ..-++.+| ..+-.+.+....+.+.|++ .|+.||...+++...+.+..
T Consensus 604 i~~a~~lg~~vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~~~ 658 (663)
T PRK10060 604 VAVAQALNLQVI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYL 658 (663)
T ss_pred HHHHHHCCCcEE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHhhh
Confidence 322 11345554 5566778888888999997 34889999999888776654
No 147
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=75.59 E-value=3.6 Score=34.72 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=28.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGD 82 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~ 82 (241)
|||||.+-.+-..+.+.|++.|+++..+....
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~ 33 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDE 33 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCC
Confidence 89999999999999999999999888776553
No 148
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=75.40 E-value=34 Score=28.97 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=45.1
Q ss_pred cCCCccEEEEeCCCCC---------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHH---HHHcCCcceEe-CCCChH
Q 026247 110 EESRVNLIMTDYCMPG---------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTM---CLEEGAEEFLL-KPVRLS 176 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~---------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~---a~~~Ga~dyL~-KP~~~~ 176 (241)
....+|.|++|+.-.. .+-.+++..++........+++=....+.....+ ++..|+++++. |--+.+
T Consensus 18 ~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~ves~~ 97 (221)
T PF03328_consen 18 AASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGADGIVLPKVESAE 97 (221)
T ss_dssp HTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT--SHH
T ss_pred HhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCCeeeccccCcHH
Confidence 4678999999998755 3344555555432222233333333344445555 99999999855 444677
Q ss_pred HHHHHHHHHh
Q 026247 177 DLEKLQPRLL 186 (241)
Q Consensus 177 ~L~~~i~~~l 186 (241)
++..++..+.
T Consensus 98 ~~~~~~~~~~ 107 (221)
T PF03328_consen 98 DARQAVAALR 107 (221)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 7766655554
No 149
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=75.05 E-value=31 Score=32.33 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC----CHHHHH
Q 026247 57 SLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM----TGYDLL 132 (241)
Q Consensus 57 d~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~----~G~el~ 132 (241)
|....+.+...|...||+.+. ....+|+|++...-... ..++.+
T Consensus 9 N~~ds~~~~~~l~~~g~~~~~--------------------------------~~~~aD~v~intctv~~~a~~~~~~~i 56 (414)
T TIGR01579 9 NQYESESLKNQLIQKGYEVVP--------------------------------DEDKADVYIINTCTVTAKADSKARRAI 56 (414)
T ss_pred CHHHHHHHHHHHHHCcCEECC--------------------------------CcccCCEEEEeccccchHHHHHHHHHH
Confidence 344556677777777876542 23458999999876654 367788
Q ss_pred HHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 133 KRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 133 ~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+++|. ..++.+|| +++......-.++......|++.-+-....+...+....
T Consensus 57 ~~~k~-~~p~~~vv-vgGc~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~~ 108 (414)
T TIGR01579 57 RRARR-QNPTAKII-VTGCYAQSNPKELADLKDVDLVLGNKEKDKINKLLSLGL 108 (414)
T ss_pred HHHHh-hCCCcEEE-EECCccccCHHHHhcCCCCcEEECCCCHHHHHHHHHHHh
Confidence 88874 34566655 555443333444455656678888888777777776543
No 150
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=74.84 E-value=26 Score=30.90 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=60.2
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
...-||-+++|.+--..|.-.++..|+.. ..+..|||-... .+...+.++++.|+..+|.-=++..+=.+.+-+..+.
T Consensus 35 A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rY 113 (255)
T COG3836 35 ATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRY 113 (255)
T ss_pred HhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccC
Confidence 56789999999999999999999999864 556778876654 5688899999999999988655544444444455544
Q ss_pred C
Q 026247 189 P 189 (241)
Q Consensus 189 ~ 189 (241)
+
T Consensus 114 P 114 (255)
T COG3836 114 P 114 (255)
T ss_pred C
Confidence 3
No 151
>PRK14974 cell division protein FtsY; Provisional
Probab=74.69 E-value=39 Score=31.09 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=52.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHhhcCcEEEEECCH-------HHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 48 TFHVLAVDDSL---IDRKILENLLRVSSYQVTCVDSG-------DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 48 ~~~VLIVDDd~---~~~~~l~~~L~~~g~~V~~~~~~-------~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
+.+|++++.|. .....+.......|..+.....+ .+++++. ....+|+|
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~---------------------~~~~~DvV 226 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA---------------------KARGIDVV 226 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH---------------------HhCCCCEE
Confidence 45787777663 33344555555566655433222 1233333 33468999
Q ss_pred EEeCCCCCCC--HHHHHHHHh---hcCCCCCcEEEEecCCChHHHH--HHH--HcCCcceE-eC
Q 026247 118 MTDYCMPGMT--GYDLLKRLK---VSSWKDVPVVVMSSENVPSRVT--MCL--EEGAEEFL-LK 171 (241)
Q Consensus 118 llD~~mp~~~--G~el~~~lr---~~~~~~~pII~lsa~~~~~~~~--~a~--~~Ga~dyL-~K 171 (241)
|+|.- +.. -..++..|+ ....++.-++++++....+... +.+ ..|++++| .|
T Consensus 227 LIDTa--Gr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTK 288 (336)
T PRK14974 227 LIDTA--GRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTK 288 (336)
T ss_pred EEECC--CccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEee
Confidence 99974 322 233334433 2234566666776654433332 223 36888874 45
No 152
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=74.04 E-value=57 Score=28.04 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=45.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++-....+.-|..+++.+. ..+|+|+. ... ...+.+..|..+++.++.+.+++.+.+..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a----~G~Pvi~~-~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA----AGVPVIAS-DIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH----CCCCEEEC-CCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46776543323445666666665 46788753 322 23445667888999999999999999999985
No 153
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.76 E-value=38 Score=29.95 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=44.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++=.. .+.-|..+++.+. ..+|+|+. ... ...+.+..|..+|+.+|.+.+++...+..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma----~g~PvI~s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA----CGVPVVAS-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH----cCCCEEEe-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 477766443 3444666666654 46888764 322 23456677889999999999999999988874
No 154
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.61 E-value=53 Score=29.29 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=60.7
Q ss_pred cEEEEEe--CCH---HHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 49 FHVLAVD--DSL---IDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 49 ~~VLIVD--Dd~---~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
|||.|+- ..+ .....+.++|+..|+++............... . . . .......+|+|+.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~------~---~---~-~~~~~~~~d~vi~---- 63 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSE------E---D---V-LPLEEMDVDFIIA---- 63 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccc------c---c---c-ccccccCCCEEEE----
Confidence 4677762 222 23445666777889888775432222111100 0 0 0 0001235788776
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
-|.||. +++.++ .....+||+.+.. |=.+|+. .+..+++...+.+++.+.
T Consensus 64 iGGDGT-lL~a~~-~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 64 IGGDGT-ILRIEH-KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred EeCcHH-HHHHHH-hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 377884 334444 3335789887754 3346765 677889999999988664
No 155
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=73.21 E-value=4.6 Score=33.64 Aligned_cols=31 Identities=13% Similarity=-0.029 Sum_probs=27.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
|||||..-.+-..+.++|+..|++|..+.+.
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~ 32 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRND 32 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCC
Confidence 8999999999999999999999998887754
No 156
>PLN02591 tryptophan synthase
Probab=73.19 E-value=14 Score=32.59 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=44.5
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCC------ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSEN------VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~------~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+.+++++.+|. . .++|+|+||=+. ......+|.++|+++.|.-....++.......+..
T Consensus 65 ~~~~~~~~~r~-~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAP-Q-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhc-C-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45777888873 2 578988887543 34557889999999999998888888777666643
No 157
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=72.85 E-value=14 Score=33.90 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=41.2
Q ss_pred CccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 113 RVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 113 ~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
.+|+|.+|...+..+ -.+++++||. .++++|||+= .-.+.+....+.++|++...
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~-~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKK-HLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHh-hCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 469999999997644 4578899984 5567777652 22367888999999999765
No 158
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=72.73 E-value=10 Score=32.74 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCCcEEEEecC------CChHHHHHHHHcCCcceEeCCCChHHHHH
Q 026247 141 KDVPVVVMSSE------NVPSRVTMCLEEGAEEFLLKPVRLSDLEK 180 (241)
Q Consensus 141 ~~~pII~lsa~------~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~ 180 (241)
-.+|||+|+-+ +...++..+.++|+++||.-.+.+++-..
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 56899999754 56788899999999999998887777544
No 159
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=72.51 E-value=26 Score=29.35 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=29.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
++|+|||-...+...+.+.|+..|+++..+.+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDP 33 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCH
Confidence 589999999999999999999999998888653
No 160
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=72.34 E-value=30 Score=32.01 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=42.0
Q ss_pred CCccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 112 SRVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
..+|+|++|..-.... -++.+++||. .+|..+| +--.-...+....++.+|||...+-
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~-~~p~~~v-iaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVRE-AFPEHTI-MAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHh-hCCCCeE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 3699999998765433 4678899984 4565433 3444667889999999999988644
No 161
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=71.04 E-value=57 Score=30.95 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=44.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc------CCcceEeCCCChHHHHHHHHHHh
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE------GAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~------Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
..|++++--. .+.-|..+++.+- ..+|||+ |..+.. .+.+.. |..+++..|.+.+++.+.+.+++
T Consensus 370 ~aDv~vlpS~-~Eg~p~~vlEAma----~G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll 440 (475)
T cd03813 370 KLDVLVLTSI-SEGQPLVILEAMA----AGIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLL 440 (475)
T ss_pred hCCEEEeCch-hhcCChHHHHHHH----cCCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHh
Confidence 4677776543 2344566666654 4688876 433322 233333 77899999999999999999988
Q ss_pred cC
Q 026247 187 KS 188 (241)
Q Consensus 187 ~~ 188 (241)
..
T Consensus 441 ~~ 442 (475)
T cd03813 441 KD 442 (475)
T ss_pred cC
Confidence 53
No 162
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=70.99 E-value=20 Score=28.74 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=44.7
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEEC----CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVD----SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~----~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
...+.+|+|+........-+..+|...|..|+.++ +.+++++ .-|+|++-
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~--------------------------~ADIVvsA 78 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH--------------------------DADVVVVG 78 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh--------------------------hCCEEEEe
Confidence 34566999999999999999999999999999887 5554433 36999998
Q ss_pred CCCCC
Q 026247 121 YCMPG 125 (241)
Q Consensus 121 ~~mp~ 125 (241)
..-+.
T Consensus 79 tg~~~ 83 (140)
T cd05212 79 SPKPE 83 (140)
T ss_pred cCCCC
Confidence 87774
No 163
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.84 E-value=77 Score=28.21 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=54.6
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLI---DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~---~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|.+++-|.. ....++......|+.+..+.+..+..+.+..+ .....+|+||+|. |
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l-----------------~~~~~~D~ViIDt--~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF-----------------KEEARVDYILIDT--A 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHH-----------------HhcCCCCEEEEEC--C
Confidence 356777766543 33344555555677777666655444433211 0234699999997 3
Q ss_pred CCC--HHHHHHHHhh---cCCCCCcEEEEecCCChHHH----HHHHHcCCcceE-eC
Q 026247 125 GMT--GYDLLKRLKV---SSWKDVPVVVMSSENVPSRV----TMCLEEGAEEFL-LK 171 (241)
Q Consensus 125 ~~~--G~el~~~lr~---~~~~~~pII~lsa~~~~~~~----~~a~~~Ga~dyL-~K 171 (241)
+.. .-+.++.++. ...++-.++++++....... ...-..+++++| +|
T Consensus 164 Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TK 220 (270)
T PRK06731 164 GKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 220 (270)
T ss_pred CCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEe
Confidence 322 2333344432 22344446667665433332 333356777774 45
No 164
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=70.70 E-value=35 Score=27.54 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=41.0
Q ss_pred CCccEEEEeCCCCC--------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVNLIMTDYCMPG--------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~DlVllD~~mp~--------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..+|.|+++...|. ..|++.+++++.. ..+||++..+- +.+.+.+++..|++++..
T Consensus 114 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 114 LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 35899988755443 3467888888743 56899887665 468888999999998754
No 165
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=70.56 E-value=13 Score=30.94 Aligned_cols=71 Identities=20% Similarity=0.128 Sum_probs=46.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--E-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--V-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
.-+|..||-++.....+++-++..+.. + ....+...++..+. .....||+|++|-=-.
T Consensus 65 A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~-------------------~~~~~fDiIflDPPY~ 125 (183)
T PF03602_consen 65 AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA-------------------KKGEKFDIIFLDPPYA 125 (183)
T ss_dssp -SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH-------------------HCTS-EEEEEE--STT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc-------------------ccCCCceEEEECCCcc
Confidence 348999999999999999999988743 3 34667777776541 1357899999994332
Q ss_pred CCCH-HHHHHHHhh
Q 026247 125 GMTG-YDLLKRLKV 137 (241)
Q Consensus 125 ~~~G-~el~~~lr~ 137 (241)
.... .+++..|..
T Consensus 126 ~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 126 KGLYYEELLELLAE 139 (183)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 3333 557777753
No 166
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=70.22 E-value=69 Score=27.39 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=40.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHH
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
+.-+.++=+.++- -+.++.+++++.. ++++.|- .-.--+.+....+.++|++ ||.-|....++.+...
T Consensus 31 ~~Gi~~iEit~~t--~~a~~~i~~l~~~-~~~~~vG-AGTVl~~~~a~~a~~aGA~-FivsP~~~~~v~~~~~ 98 (204)
T TIGR01182 31 EGGLRVLEVTLRT--PVALDAIRLLRKE-VPDALIG-AGTVLNPEQLRQAVDAGAQ-FIVSPGLTPELAKHAQ 98 (204)
T ss_pred HcCCCEEEEeCCC--ccHHHHHHHHHHH-CCCCEEE-EEeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 3445555444443 4477777888743 3443332 3333467788888888885 7777776666555433
No 167
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=69.77 E-value=66 Score=27.03 Aligned_cols=80 Identities=23% Similarity=0.169 Sum_probs=52.9
Q ss_pred hhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC-CC-CCCCHHHHHHHHhhcCCCCCcE
Q 026247 69 RVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY-CM-PGMTGYDLLKRLKVSSWKDVPV 145 (241)
Q Consensus 69 ~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~-~m-p~~~G~el~~~lr~~~~~~~pI 145 (241)
...|..+. .+.+.+++.+.. ...+|.+.+-- .. ....+++++++++.....++|+
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~----------------------~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pv 175 (217)
T cd00331 118 RELGMEVLVEVHDEEELERAL----------------------ALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVIL 175 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHH----------------------HcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEE
Confidence 44677653 467777766654 23467665541 10 0122457777776432146899
Q ss_pred EEEecCCChHHHHHHHHcCCcceEe
Q 026247 146 VVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 146 I~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
++..+-...+.+.++++.|+++++.
T Consensus 176 ia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 176 VSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred EEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 9888888889999999999999865
No 168
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.74 E-value=83 Score=30.13 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=57.2
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 47 ETFHVLAVDDSLI---DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 47 ~~~~VLIVDDd~~---~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.+.+|++++-|.. ....+..+-...|+.+..+.+..+..+.+... .....+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~l-----------------k~~~~~DvVLIDT-- 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF-----------------KEEARVDYILIDT-- 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHH-----------------HhccCCCEEEEeC--
Confidence 3568988887764 33345555556677777777766655555211 0123699999996
Q ss_pred CCCCH--HHHHHHHhh---cCCCCCcEEEEecCCChHH---HH-HHHHcCCcceEe
Q 026247 124 PGMTG--YDLLKRLKV---SSWKDVPVVVMSSENVPSR---VT-MCLEEGAEEFLL 170 (241)
Q Consensus 124 p~~~G--~el~~~lr~---~~~~~~pII~lsa~~~~~~---~~-~a~~~Ga~dyL~ 170 (241)
+|.+. .+.+..++. ...++-.++++++...... .. ..-..|.+++|.
T Consensus 329 aGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~ 384 (436)
T PRK11889 329 AGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 384 (436)
T ss_pred ccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEE
Confidence 33222 333344432 2234444566665433322 22 223457887754
No 169
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=69.49 E-value=18 Score=32.16 Aligned_cols=58 Identities=10% Similarity=0.186 Sum_probs=43.5
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCC------ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSEN------VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~------~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+.+++++++|. . ..+|+|+||=+. -.....+|.++|++++|.-....++.......+.
T Consensus 78 ~~~~~~~~~r~-~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~ 141 (263)
T CHL00200 78 KILSILSEVNG-E-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCN 141 (263)
T ss_pred HHHHHHHHHhc-C-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHH
Confidence 35777888873 2 678988887553 3556889999999999998777787766665554
No 170
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.14 E-value=28 Score=33.00 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 111 ESRVNLIMTDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 111 ~~~~DlVllD~~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
+...|+|.+|..-+. ..-.++++++|. .+|+++|| +-.-...+....+.++|||...
T Consensus 163 ~aGvDvI~iD~a~g~~~~~~~~v~~ik~-~~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 163 KAHVDILVIDSAHGHSTRIIELVKKIKT-KYPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred hcCCCEEEEECCCCCChhHHHHHHHHHh-hCCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 456999999998874 455688889984 55777754 4445567888899999998764
No 171
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=68.92 E-value=52 Score=29.66 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=41.8
Q ss_pred CHHHHHHHHhhcCCCCCcEE--EEecCCChHHHHHHHHcCCcceEeC-----CCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVV--VMSSENVPSRVTMCLEEGAEEFLLK-----PVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII--~lsa~~~~~~~~~a~~~Ga~dyL~K-----P~~~~~L~~~i~~~l~ 187 (241)
.|+++++.++.. ..+||| +...-...+.+..+++.|++++++= .-++......+...+.
T Consensus 181 ~d~elLk~l~~~--~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 181 APYELVKETAKL--GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCHHHHHHHHHh--cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 578888988753 358997 6666668999999999999988543 3345555555555554
No 172
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=68.81 E-value=77 Score=28.56 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=59.2
Q ss_pred EEEEeCCHHHHHHHHHHHh----hcCcEE---EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 51 VLAVDDSLIDRKILENLLR----VSSYQV---TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~----~~g~~V---~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
|||=|.|-...-.+.+.++ ..+|.+ +.+++.+++.+.+ ...+|+|++|-.-
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl----------------------~agaDiImLDNm~ 218 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEAL----------------------EAGADIIMLDNMS 218 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHH----------------------HcCCCEEEecCCC
Confidence 6666666555554555554 346533 3589999999987 3569999999543
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
| -++-+.++......-.++=.|+.-..+.+......|+|-+
T Consensus 219 ~----e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 219 P----EELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred H----HHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 3 3333333221123345666788888899999999999743
No 173
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.67 E-value=87 Score=30.53 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=41.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
...|.+++-..-...+ ..++..+|.. .++.+||+-+.+ .+......+.|+|..+ -| ...+.+.+.+.+....
T Consensus 480 ~~a~~viv~~~~~~~~-~~iv~~~~~~-~~~~~iiar~~~--~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 480 DCARWLLLTIPNGYEA-GEIVASAREK-RPDIEIIARAHY--DDEVAYITERGANQVV-MG--EREIARTMLELLETPP 551 (558)
T ss_pred cccCEEEEEcCChHHH-HHHHHHHHHH-CCCCeEEEEECC--HHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHhcCCC
Confidence 4577776654322222 2344555543 477888877653 4566666789998444 45 3455566666665443
No 174
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=68.20 E-value=69 Score=27.76 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcCcEEEE-ECC--HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC------HHH
Q 026247 60 DRKILENLLRVSSYQVTC-VDS--GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT------GYD 130 (241)
Q Consensus 60 ~~~~l~~~L~~~g~~V~~-~~~--~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~------G~e 130 (241)
....+.+.+++.|..+.. +.. ..+.++.+ ......++++ -.+|+.. -.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~---------------------~~~~~~~l~m-sv~~~~g~~~~~~~~~ 174 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRL---------------------SKLSPLFIYY-GLRPATGVPLPVSVER 174 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH---------------------HHhCCCEEEE-EeCCCCCCCchHHHHH
Confidence 344566677778876543 222 23333333 2334566666 4555532 134
Q ss_pred HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 131 LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
.++++|.. .+..||++=.+-.+.+.+..+.++|+|+++.-.
T Consensus 175 ~i~~lr~~-~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 175 NIKRVRNL-VGNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHHHHHHh-cCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 66666643 234676543444467888888999999998753
No 175
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=68.08 E-value=51 Score=30.35 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=69.8
Q ss_pred cEEEEEeCCHHHHHHHHHHH------hhcCcEE--EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 49 FHVLAVDDSLIDRKILENLL------RVSSYQV--TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L------~~~g~~V--~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+++=|+.|+.....-+...+ -..||.| +|..|...|.++. +-.+ +.++-
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~----------------------~~g~-~avmP 224 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLE----------------------DAGA-VAVMP 224 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH----------------------hcCC-EEEee
Confidence 46666666655433222222 2359987 5677888876665 1223 44444
Q ss_pred CCCCCCC-----HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-----CCCChHHHHHHHHHHh
Q 026247 121 YCMPGMT-----GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-----KPVRLSDLEKLQPRLL 186 (241)
Q Consensus 121 ~~mp~~~-----G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-----KP~~~~~L~~~i~~~l 186 (241)
|--|-.+ --+.++.+... +.+|||+=.+-...+++..+++.|+++.|. |--++-....+.....
T Consensus 225 l~~pIGsg~gv~~p~~i~~~~e~--~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av 298 (326)
T PRK11840 225 LGAPIGSGLGIQNPYTIRLIVEG--ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAV 298 (326)
T ss_pred ccccccCCCCCCCHHHHHHHHHc--CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHH
Confidence 3333222 33556666643 579999889999999999999999998854 5555555555555443
No 176
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=68.01 E-value=23 Score=30.16 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=44.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
+.-+|.-+|-++......++.++..|+ .|. ..+++.+.+..+.. ......||+|++|..
T Consensus 69 ~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~-----------------~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 69 EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN-----------------DGEEGQFDFVFIDAD 130 (205)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH-----------------TTTTTSEEEEEEEST
T ss_pred ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh-----------------ccCCCceeEEEEccc
Confidence 345899999999999999999998886 354 46888888877621 001347999999984
No 177
>CHL00101 trpG anthranilate synthase component 2
Probab=67.33 E-value=13 Score=30.87 Aligned_cols=31 Identities=16% Similarity=0.017 Sum_probs=27.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
|||||.....-..+.+.|+..|+.+..+.+.
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~ 32 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRND 32 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECC
Confidence 8999999999999999999999988876654
No 178
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=67.25 E-value=74 Score=28.59 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=45.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
.|+.++--. ...-|..+++.+. ..+|||..-..+. ..+.+..|-++++..|.+.+++.+.+..++....
T Consensus 258 ~d~~v~~s~-~Egf~~~~lEAma----~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 258 VSALLLTSK-FEGFPMTLLEAMS----YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred CcEEEECCc-ccCcChHHHHHHH----cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 355554221 2233666666665 4689875320222 2345677899999999999999999999986553
No 179
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=66.93 E-value=37 Score=36.77 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=67.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
.-+||+. |-|.+=..++.-+|+..||+|+..+ ..++.++.+ .+..+|+|.+-
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa---------------------~e~~~diVgLS 809 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETA---------------------KEENADIIGLS 809 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH---------------------HHhCCCEEEEc
Confidence 3478887 8888888889999999999999765 456667766 56789999998
Q ss_pred CCCCC-CCH-HHHHHHHhhcCCCCCcEEEEecCCChHHH-HH--HHHcCCcceEe
Q 026247 121 YCMPG-MTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRV-TM--CLEEGAEEFLL 170 (241)
Q Consensus 121 ~~mp~-~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~-~~--a~~~Ga~dyL~ 170 (241)
.-|.. +.. .++++.|+.. ..++||++=-+..+.... .+ ..-.|++.|-.
T Consensus 810 ~L~t~s~~~m~~~i~~L~~~-g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~ 863 (1229)
T PRK09490 810 GLITPSLDEMVHVAKEMERQ-GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT 863 (1229)
T ss_pred CcchhhHHHHHHHHHHHHhc-CCCCeEEEEeeccchhhhhhhhhhcccCCcEEec
Confidence 87753 333 4567778754 457887765544443321 11 11128876654
No 180
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=66.92 E-value=1.1e+02 Score=30.45 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=59.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+++||.|-+. +..++.+.+..|. .|...+.-.+...++ ...|+.++-- .-+
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~L-----------------------aaADVfVlPS-~~E 483 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWL-----------------------QKMNVFILFS-RYE 483 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHH-----------------------HhCCEEEEcc-ccc
Confidence 456666665443 3445555555553 355555444444444 2357776632 234
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHH
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i 182 (241)
.-|..+++.+- ..+|||+....+ ..+.+..|.++|+..|.+...+.+.+
T Consensus 484 Gfp~vlLEAMA----~GlPVVATdvGG----~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 484 GLPNVLIEAQM----VGVPVISTPAGG----SAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred CccHHHHHHHH----hCCCEEEeCCCC----cHHHcccCCcEEEECCCChhhHHHHH
Confidence 45666776664 478998543322 23455689999999998877766554
No 181
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=66.91 E-value=7.1 Score=32.56 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=27.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
|||||..-.+-..+.++|+..|+++..+.+.
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~ 32 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRND 32 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCC
Confidence 8999999999999999999999988877654
No 182
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=66.76 E-value=53 Score=29.67 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=43.4
Q ss_pred CHHHHHHHHhhcCCCCCcEE--EEecCCChHHHHHHHHcCCcceE-----eCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVV--VMSSENVPSRVTMCLEEGAEEFL-----LKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII--~lsa~~~~~~~~~a~~~Ga~dyL-----~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++++++.. ..+||| +...-...+....+++.|++++. .|.-++......+...+.
T Consensus 184 ~~~elLkei~~~--~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 184 VPVELLLEVLKL--GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred CCHHHHHHHHHh--CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 578999998853 358998 66666689999999999999884 444456666655555554
No 183
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=66.73 E-value=27 Score=30.23 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=40.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEEC--CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVTCVD--SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~--~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.-++.-+|-|+......++.|+..|+ .+.... ++-+.++.. ....||+|++|..=
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~---------------------~~~~fDliFIDadK 142 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL---------------------LDGSFDLVFIDADK 142 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc---------------------cCCCccEEEEeCCh
Confidence 34899999999999999999999886 344433 444444431 46789999999753
No 184
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.63 E-value=60 Score=30.81 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=63.2
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+.+|.+|+-|+.- ...+..+-+..|+.+..+.+..+..+.+... +....+|+||+|. |
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l-----------------~~~~~~D~VLIDT--A 294 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM-----------------TYVNCVDHILIDT--V 294 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH-----------------HhcCCCCEEEEEC--C
Confidence 4689888877642 3455555556677666677776665554211 0124589999997 3
Q ss_pred CCC--HHHHHHHHhh---cCCCCCcEEEEecCCChHHHHHHH----HcCCcce-EeCCCChHHHHHHHHHH
Q 026247 125 GMT--GYDLLKRLKV---SSWKDVPVVVMSSENVPSRVTMCL----EEGAEEF-LLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 125 ~~~--G~el~~~lr~---~~~~~~pII~lsa~~~~~~~~~a~----~~Ga~dy-L~KP~~~~~L~~~i~~~ 185 (241)
|.+ .-+.+..++. ...++..++++++..........+ ..|.+++ ++|=-....+-.++.-+
T Consensus 295 Gr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET~~~G~~Lsv~ 365 (407)
T PRK12726 295 GRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVM 365 (407)
T ss_pred CCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCCCCccHHHHHH
Confidence 332 2233344332 223444455666544444444432 4566777 44533333344444433
No 185
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=66.56 E-value=74 Score=28.25 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=53.3
Q ss_pred HHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH----HHHHHHHhhc
Q 026247 64 LENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG----YDLLKRLKVS 138 (241)
Q Consensus 64 l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G----~el~~~lr~~ 138 (241)
+...-.++|+++ +.++|.+++-..+. ....+| -++--+... ++....|...
T Consensus 148 l~~~A~~LGm~~LVEVh~~eEl~rAl~----------------------~ga~iI--GINnRdL~tf~vdl~~t~~la~~ 203 (254)
T COG0134 148 LVDRAHELGMEVLVEVHNEEELERALK----------------------LGAKII--GINNRDLTTLEVDLETTEKLAPL 203 (254)
T ss_pred HHHHHHHcCCeeEEEECCHHHHHHHHh----------------------CCCCEE--EEeCCCcchheecHHHHHHHHhh
Confidence 334445689886 46999999988872 233444 333333222 2344555433
Q ss_pred CCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 139 SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 139 ~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
...+.-+|.-|+-...+++.+..+.|+++||+=
T Consensus 204 ~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 204 IPKDVILISESGISTPEDVRRLAKAGADAFLVG 236 (254)
T ss_pred CCCCcEEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 223455666677788999999999999999874
No 186
>PRK00811 spermidine synthase; Provisional
Probab=65.95 E-value=72 Score=28.34 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=43.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC------cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS------YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g------~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+|.+||=|+.+....++.|...+ -.+. ...++...+.. ....||+|++|
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----------------------~~~~yDvIi~D 157 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----------------------TENSFDVIIVD 157 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----------------------CCCcccEEEEC
Confidence 3489999999999998888886432 1232 35565554322 24579999999
Q ss_pred CCCCCCCH-----HHHHHHHhh
Q 026247 121 YCMPGMTG-----YDLLKRLKV 137 (241)
Q Consensus 121 ~~mp~~~G-----~el~~~lr~ 137 (241)
..-|...+ -++.+.++.
T Consensus 158 ~~dp~~~~~~l~t~ef~~~~~~ 179 (283)
T PRK00811 158 STDPVGPAEGLFTKEFYENCKR 179 (283)
T ss_pred CCCCCCchhhhhHHHHHHHHHH
Confidence 86664222 344555553
No 187
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=65.94 E-value=82 Score=28.46 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=58.2
Q ss_pred HHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-C----CCHHHHHHHHhh
Q 026247 64 LENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-G----MTGYDLLKRLKV 137 (241)
Q Consensus 64 l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~----~~G~el~~~lr~ 137 (241)
+-..++..|..|. .+.+.++|.... +...|.|++.-.-. + ..-+.+++.++.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~----------------------~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~ 158 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRME----------------------KAGADAVIAEGMESGGHIGELTTMALVPQVVD 158 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHH----------------------HcCCCEEEEECcccCCCCCCCcHHHHHHHHHH
Confidence 4455666676553 578888886664 34688888743211 1 234788888874
Q ss_pred cCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 138 SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 138 ~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
. -++|||+--.-.+...+..++..|+++...
T Consensus 159 ~--~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 159 A--VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred H--hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 3 358998888888889899999999998754
No 188
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=65.78 E-value=47 Score=35.82 Aligned_cols=114 Identities=13% Similarity=0.207 Sum_probs=74.7
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
-+|++. |-|.+=..++.-+|+..||+|+..+ ..++.++.+ .+..+|+|-+-.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa---------------------~e~~~diVgLS~ 791 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAA---------------------KDHNADVIGLSG 791 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH---------------------HHhCCCEEEEcC
Confidence 478877 7788888888899999999999765 466677776 567899999988
Q ss_pred CCCC-CCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHH---HHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 122 CMPG-MTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTM---CLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 122 ~mp~-~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~---a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|.. +.. .++++.|+.. ...+||++=-+..+...... ..-.|++.|-.- ..+-.....+++.
T Consensus 792 Lmt~t~~~m~~vi~~L~~~-g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~d---A~~av~~~~~l~~ 858 (1178)
T TIGR02082 792 LITPSLDEMKEVAEEMNRR-GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLD---ASRAVTVMDTLMS 858 (1178)
T ss_pred cccccHHHHHHHHHHHHhc-CCCceEEEeccccchhHHHhhhhhhccCCeEEecC---HHHHHHHHHHHhC
Confidence 7743 443 3567777754 45678776555444444332 122388776543 3344444555554
No 189
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.51 E-value=61 Score=33.36 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=59.0
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 49 FHVLAVDDSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 49 ~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.+|.+|+-|..- .+.++.+-+..|..+..+.+..+..+.+. ....+|+||+|. +|
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~--------------------~~~~~D~VLIDT--AG 273 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA--------------------ALGDKHLVLIDT--VG 273 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH--------------------HhcCCCEEEEeC--CC
Confidence 478888776542 34555555667777777778777766663 234679999996 44
Q ss_pred CC-----HHHHHHHHhhcCCCCCcEEEEecCCChHHH---HHHHHc----CCcceE-eC
Q 026247 126 MT-----GYDLLKRLKVSSWKDVPVVVMSSENVPSRV---TMCLEE----GAEEFL-LK 171 (241)
Q Consensus 126 ~~-----G~el~~~lr~~~~~~~pII~lsa~~~~~~~---~~a~~~----Ga~dyL-~K 171 (241)
++ -.+.+..+.....+.-.++++++....+.. .+.++. +.+++| +|
T Consensus 274 Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 274 MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEec
Confidence 22 123333333223345557777666554443 344543 577774 45
No 190
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=65.34 E-value=93 Score=27.09 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=43.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.|++++=-.-++.-|..+++.+- ..+|+|+. .... ..+.+..|..+|+..+.+.+++...+..++
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a----~G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQA----MGRPVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHh----cCCCEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 56766543234455666666654 46888754 3222 234566777899999999999999986555
No 191
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=65.16 E-value=63 Score=32.05 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=35.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.+.|++++-..-+. +-..++..+|+ ..|+.+||+-+. +.+......++|++..+.
T Consensus 463 ~~A~~vv~~~~d~~-~n~~i~~~~r~-~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 463 EKAEAIVITCNEPE-DTMKIVELCQQ-HFPHLHILARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred ccCCEEEEEeCCHH-HHHHHHHHHHH-HCCCCeEEEEeC--CHHHHHHHHhCCCCEEEc
Confidence 35666666654432 23455566663 457888876654 367777888999986653
No 192
>PLN02335 anthranilate synthase
Probab=65.01 E-value=9.7 Score=32.78 Aligned_cols=33 Identities=6% Similarity=-0.068 Sum_probs=26.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
+.+|||||-...+...+.+.|+..|+.+.++..
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRN 50 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEEC
Confidence 348999997777778889999999998877654
No 193
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=64.99 E-value=29 Score=33.80 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=41.4
Q ss_pred cCCCccEEEEeCCCCCCCH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 110 EESRVNLIMTDYCMPGMTG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-+...|+|.+|.. .+.+- ++++++||. .+++.+||+ ..-...+....+.++|||...+
T Consensus 257 ~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~-~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 257 VKAGVDVVVLDSS-QGDSIYQLEMIKYIKK-TYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHcCCCEEEEeCC-CCCcHHHHHHHHHHHH-hCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 3457999999994 23332 388999994 456776653 3445678899999999997744
No 194
>PRK14098 glycogen synthase; Provisional
Probab=64.90 E-value=46 Score=32.00 Aligned_cols=70 Identities=9% Similarity=0.062 Sum_probs=42.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..|+.++=- ....-|+..+..++ ..+|+|+...-+..+.+......|.++|+..|.+.+.|...+.+++.
T Consensus 381 ~aDi~l~PS-~~E~~Gl~~lEAma----~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 381 GLDMLLMPG-KIESCGMLQMFAMS----YGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred hCCEEEeCC-CCCCchHHHHHHHh----CCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 357777532 23445666666665 34555554332333333222234678999999999999999988763
No 195
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=63.83 E-value=41 Score=29.02 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCC-CH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 115 NLIMTDYCMPGM-TG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 115 DlVllD~~mp~~-~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.++++|+..-++ .| +++++.+... ..+||++--+-.+.+++.++++.|+++.+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~--~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR--ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 599999977542 23 5677777643 578999888888899999999999998875
No 196
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=63.65 E-value=83 Score=29.33 Aligned_cols=106 Identities=16% Similarity=0.297 Sum_probs=75.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEE----EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQV----TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V----~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..++=..+.++-+++.+++..+=...+.-| .++.+.++.+++++-+ .....+++.+==
T Consensus 115 ~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~------------------e~aG~~~ltVHG 176 (358)
T KOG2335|consen 115 RGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKML------------------EDAGVSLLTVHG 176 (358)
T ss_pred cCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHH------------------HhCCCcEEEEec
Confidence 345567888888888888887777776533 4688888888887422 445566666655
Q ss_pred CCCCCCH-------HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHH-cCCcceEe
Q 026247 122 CMPGMTG-------YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLE-EGAEEFLL 170 (241)
Q Consensus 122 ~mp~~~G-------~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~-~Ga~dyL~ 170 (241)
+-+...| ++.++.+|. ..+++|||+=-.-...+++.++++ .|+++.+.
T Consensus 177 Rtr~~kg~~~~pad~~~i~~v~~-~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 177 RTREQKGLKTGPADWEAIKAVRE-NVPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred ccHHhcCCCCCCcCHHHHHHHHH-hCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 5555444 678888884 445688887766667788889988 99998754
No 197
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=63.48 E-value=1.3e+02 Score=27.98 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=43.8
Q ss_pred ccEEEEeCCCC---CCCH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMP---GMTG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp---~~~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|+.++=.... +++| ..+++.+- ..+|||.. ..+. ..+.+..|.++|+..|-+.++|.+.+.+++.
T Consensus 299 aDv~v~pS~~~~~g~~Eg~p~~llEAma----~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 299 ADVFLLPSVTGADGDMEGIPVALMEAMA----VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCEEEECCccCCCCCccCccHHHHHHHh----CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 57776533211 1244 44555554 56898754 3322 3455678999999999999999999999885
No 198
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.30 E-value=38 Score=30.63 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=45.0
Q ss_pred EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCCh
Q 026247 75 VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVP 154 (241)
Q Consensus 75 V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~ 154 (241)
.+.+.+.+++.+.+ ....|+|++| +|.--+--++++.++. ..+. ..+..|+--+.
T Consensus 203 eVEv~tl~ea~eal----------------------~~gaDiI~LD-nm~~e~vk~av~~~~~-~~~~-v~ieaSGGI~~ 257 (289)
T PRK07896 203 EVEVDSLEQLDEVL----------------------AEGAELVLLD-NFPVWQTQEAVQRRDA-RAPT-VLLESSGGLTL 257 (289)
T ss_pred EEEcCCHHHHHHHH----------------------HcCCCEEEeC-CCCHHHHHHHHHHHhc-cCCC-EEEEEECCCCH
Confidence 34689999999987 3458999999 3332122222333332 2233 35667888888
Q ss_pred HHHHHHHHcCCcce
Q 026247 155 SRVTMCLEEGAEEF 168 (241)
Q Consensus 155 ~~~~~a~~~Ga~dy 168 (241)
+.+.+..+.|+|.+
T Consensus 258 ~ni~~yA~tGvD~I 271 (289)
T PRK07896 258 DTAAAYAETGVDYL 271 (289)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999999744
No 199
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=63.29 E-value=70 Score=24.97 Aligned_cols=110 Identities=18% Similarity=0.303 Sum_probs=66.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCH--HHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSG--DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~--~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
...++++|+.+..... .+.......+. .+...+.. ++..++++ ..|++++=.
T Consensus 45 ~~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~-----------------------~~di~v~~s 100 (172)
T PF00534_consen 45 NPNYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYK-----------------------SSDIFVSPS 100 (172)
T ss_dssp HTTEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHH-----------------------HTSEEEE-B
T ss_pred CCCeEEEEEccccccc-ccccccccccccccccccccccccccccccc-----------------------cceeccccc
Confidence 4466778887333222 24444444443 45554444 35566652 257777655
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.. +.-|..+++.+. ..+|+|+ +.. ....+.+..|..+|+..+.+..++...+.+++..
T Consensus 101 ~~-e~~~~~~~Ea~~----~g~pvI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 101 RN-EGFGLSLLEAMA----CGCPVIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp SS-BSS-HHHHHHHH----TT-EEEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred cc-cccccccccccc----cccceee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 55 555667777665 3567764 332 3334567788899999999999999999998853
No 200
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.09 E-value=77 Score=29.70 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=49.1
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-CC
Q 026247 49 FHVLAVDDSLI---DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC-MP 124 (241)
Q Consensus 49 ~~VLIVDDd~~---~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~-mp 124 (241)
.+|.+|..|.. -.+.+..+-+..|..+..+.+..+....+. .-..+|+||+|.- +.
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~--------------------~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA--------------------ELRNKHMVLIDTIGMS 227 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--------------------HhcCCCEEEEcCCCCC
Confidence 47777776665 345566666667777777666555444442 2245799999973 22
Q ss_pred CCCHH--HHHHHHhhcCCCCCcEEEEecCCChHHH
Q 026247 125 GMTGY--DLLKRLKVSSWKDVPVVVMSSENVPSRV 157 (241)
Q Consensus 125 ~~~G~--el~~~lr~~~~~~~pII~lsa~~~~~~~ 157 (241)
..+.. +.+..+.....+.-.++++++....+..
T Consensus 228 ~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 228 QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred cccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 22222 2333343222223347778776655443
No 201
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=62.98 E-value=14 Score=32.79 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=39.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEEC-------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVD-------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~-------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
|||||+-.+-.+...+...|...|++|.... +.+...+++ ....||+||-=.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~---------------------~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLL---------------------EAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHH---------------------HHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHH---------------------HHhCCCeEeccc
Confidence 6899999999999999999998898887653 556666666 445799988766
Q ss_pred CCC
Q 026247 122 CMP 124 (241)
Q Consensus 122 ~mp 124 (241)
-+.
T Consensus 60 a~~ 62 (286)
T PF04321_consen 60 AYT 62 (286)
T ss_dssp ---
T ss_pred eee
Confidence 543
No 202
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=62.63 E-value=94 Score=26.21 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|+++.-... +.-|..+++.+- ..+|+|+........ .....|..+++.++.+.+++.+.+.+++..
T Consensus 253 ad~~i~ps~~-e~~~~~~~Ea~a----~G~Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 253 ASIFVLTSRF-EGFPMVLLEAMA----FGLPVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred CCEEEeCccc-cccCHHHHHHHH----cCCCEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 5777765544 333566666654 468887543222222 334566788999999999999999999753
No 203
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=62.32 E-value=32 Score=29.08 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=41.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
.-++++||-|......+.+-++..+. .+. ...++..++..+. ....||+|++|---.
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--------------------~~~~FDlVflDPPy~ 125 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--------------------TREPFDLVFLDPPYA 125 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC--------------------CCCcccEEEeCCCCc
Confidence 45899999999999999999988873 333 3455666666652 223599999996444
No 204
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=62.27 E-value=28 Score=35.49 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=29.9
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 44 QQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 44 ~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
......+|+|||-...+...+.++|+..|+.+..+..
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~ 548 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRH 548 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEEC
Confidence 3345679999998877788899999999998877654
No 205
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=61.95 E-value=1.1e+02 Score=27.86 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=45.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|+.++ ...|..-|+.+++.+- ..+|||.. ... ...+.+..|.++++..|.+.++|.+.+.+++..
T Consensus 301 adv~v~-~s~~e~~~~~llEAmA----~G~PVIas-~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 301 SDVHVY-LTYPFVLSWSLLEAMA----CGCLVVGS-DTA---PVREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred CcEEEE-cCcccccchHHHHHHH----CCCCEEEc-CCC---CchhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 455554 2345555666666654 57888753 322 233456678899999999999999999998853
No 206
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=61.29 E-value=71 Score=31.86 Aligned_cols=93 Identities=12% Similarity=0.116 Sum_probs=53.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEEC-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVD-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+..+.++|.|+...+.++ +.|+.+...+ +-.+.++.. .-.+.+++++-..-+..
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~a---------------------gi~~A~~vvv~~~d~~~ 477 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA---------------------GAAKAEVLINAIDDPQT 477 (621)
T ss_pred CCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhc---------------------CCCcCCEEEEEeCCHHH
Confidence 456777777776544433 3566654332 222233332 23356777776644332
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
+ ..++..+|+ .+|+++|++-+. +.....+..+.|++..+
T Consensus 478 n-~~i~~~ar~-~~p~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 478 S-LQLVELVKE-HFPHLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred H-HHHHHHHHH-hCCCCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 3 445566663 457888876554 35667778899998653
No 207
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=60.89 E-value=14 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
+||||||.....-..+.++|+..|+++..+.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6899999888888889999999998877665
No 208
>PRK05637 anthranilate synthase component II; Provisional
Probab=60.46 E-value=17 Score=30.92 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
.+|||||....+...+...|+..|+.+..+...
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~ 34 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT 34 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC
Confidence 479999999999999999999999988877653
No 209
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=59.97 E-value=57 Score=27.61 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=42.2
Q ss_pred Ccc-EEEEeCCCCC-CCH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC-CcceEe
Q 026247 113 RVN-LIMTDYCMPG-MTG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG-AEEFLL 170 (241)
Q Consensus 113 ~~D-lVllD~~mp~-~~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G-a~dyL~ 170 (241)
.++ ++++|..--+ ..| ++++++++.. ..+|||+-..-.+.+++.++++.| +++.+.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~--~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAA--VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHh--CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 455 7888875433 234 6888888743 358999888888899999999988 998875
No 210
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=59.95 E-value=38 Score=28.00 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=56.2
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hcCcE--E-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDDSLIDRKILENLLR----VSSYQ--V-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~----~~g~~--V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.|||=|.+-...-.+.+.++ ..+.. + ..+.+.+++.+.+ ...+|+|.+|-.
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~----------------------~~g~d~I~lD~~ 109 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEAL----------------------EAGADIIMLDNM 109 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHH----------------------HTT-SEEEEES-
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHH----------------------HhCCCEEEecCc
Confidence 35665555554433333332 22322 3 4688999999988 245999999975
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
-|+ +--++++.++... +. ..|..|+--+.+.+.+..+.|+|.+-
T Consensus 110 ~~~-~~~~~v~~l~~~~-~~-v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 110 SPE-DLKEAVEELRELN-PR-VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp CHH-HHHHHHHHHHHHT-TT-SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred CHH-HHHHHHHHHhhcC-Cc-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 442 2223444444322 33 66778888889999999999987553
No 211
>PLN02316 synthase/transferase
Probab=59.80 E-value=1.1e+02 Score=32.72 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=46.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHH---------HHcCCcceEeCCCChHHHHHHHH
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMC---------LEEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a---------~~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
..|++++= .+-..-|+..+..++ ..+|+|+-..-+-.+.+... ...|.++|+..|.+...|..+|.
T Consensus 919 aADiflmP-S~~EP~GLvqLEAMa----~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~ 993 (1036)
T PLN02316 919 GADFILVP-SIFEPCGLTQLTAMR----YGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALN 993 (1036)
T ss_pred hCcEEEeC-CcccCccHHHHHHHH----cCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHH
Confidence 46787775 344556787777776 35555554333333333221 11257899999999999999999
Q ss_pred HHhcC
Q 026247 184 RLLKS 188 (241)
Q Consensus 184 ~~l~~ 188 (241)
+++..
T Consensus 994 raL~~ 998 (1036)
T PLN02316 994 RAISA 998 (1036)
T ss_pred HHHhh
Confidence 98853
No 212
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=59.33 E-value=44 Score=27.78 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=27.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGD 82 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~ 82 (241)
|+|||----+-..+.+.|++.|+.+..+.+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 68888888888899999999999999888644
No 213
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=59.03 E-value=84 Score=30.12 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=65.8
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 49 FHVLAV----DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 49 ~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
.+|.|+ -=|....+.+...|...||+++. .....|+|++..+-.
T Consensus 24 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~--------------------------------~~~~ADiviiNTC~v 71 (467)
T PRK14329 24 KKLFIESYGCQMNFADSEIVASILQMAGYNTTE--------------------------------NLEEADLVLVNTCSI 71 (467)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC--------------------------------CcccCCEEEEeCcce
Confidence 345554 46777778888888888987653 123479999998876
Q ss_pred CCCH----HHHH---HHHhhcCCCCCcEEEEecCCChHHHHHHHHc-CCcceEeCCCChHHHHHHHHHHhc
Q 026247 125 GMTG----YDLL---KRLKVSSWKDVPVVVMSSENVPSRVTMCLEE-GAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 125 ~~~G----~el~---~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~-Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..+. ...+ ++++. ..+..+| ++++......-.+.++. +..||+..+-....+.+++..+..
T Consensus 72 ~~~a~~k~~~~i~~~~~~k~-~~p~~~i-vvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~ 140 (467)
T PRK14329 72 RDNAEQKVRKRLEKFNALKK-KNPKLIV-GVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEE 140 (467)
T ss_pred echHHHHHHHHHHHHHHHHh-hCCCcEE-EEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhc
Confidence 5332 2233 33342 3456555 45555433333444444 436899999988888888877653
No 214
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=58.78 E-value=1.4e+02 Score=26.98 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=45.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..|+.++-.. .+.-|..+++.+. ..+|||+..... ..+.+..|..+++..|-+.+++.+.+.+++.
T Consensus 302 ~ad~~v~ps~-~E~~g~~~lEAma----~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 302 AADVVAVPSY-NESFGLVAMEAQA----CGTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred hCCEEEECCC-CCCcChHHHHHHH----cCCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 3577766533 3445666766665 468997654322 2234567888999999999999999999885
No 215
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.74 E-value=41 Score=30.33 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcCc--EE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDDSLIDRKILENLL----RVSSY--QV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L----~~~g~--~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.|||=|.|-...-.+.+.+ +..++ .+ ..+.+.+++.+.+ ...+|+|.+|-.
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~----------------------~~GaD~I~LDn~ 225 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEAL----------------------EYGADIIMLDNM 225 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH----------------------HcCCCEEEECCC
Confidence 4666666544433333333 23443 23 3588999999887 356899999932
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
-|+ +=-++++.++. ..+.+|+ ..++--+.+.+.+....|+|.+
T Consensus 226 ~~e-~l~~av~~~~~-~~~~i~l-eAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 226 PVD-LMQQAVQLIRQ-QNPRVKI-EASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred CHH-HHHHHHHHHHh-cCCCeEE-EEECCCCHHHHHHHHHcCCCEE
Confidence 221 11122333332 1345554 4566667888889999999755
No 216
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=58.68 E-value=1.2e+02 Score=28.99 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=51.1
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCcEEEEECC---HH----HHHHHHhhhcccccCCCCCCCcccccccCCCccE
Q 026247 47 ETFHVLAVDDSLI---DRKILENLLRVSSYQVTCVDS---GD----KALEYLGLIDNLENNSNASPSTLSTKKEESRVNL 116 (241)
Q Consensus 47 ~~~~VLIVDDd~~---~~~~l~~~L~~~g~~V~~~~~---~~----eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 116 (241)
.+.+|++|+-|.. ....+..+-...|..+..+.. .. ++++.+ ....+|+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~---------------------~~~~~Dv 185 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA---------------------KENGFDV 185 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH---------------------HhcCCCE
Confidence 3568999987743 233344444555655554432 22 233332 3456999
Q ss_pred EEEeCCC--C-CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHH--HHH--HcCCcceEe
Q 026247 117 IMTDYCM--P-GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVT--MCL--EEGAEEFLL 170 (241)
Q Consensus 117 VllD~~m--p-~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~--~a~--~~Ga~dyL~ 170 (241)
||+|.-= + +-..++-+..+.....++-.++++.+....+... +.+ ..+.+++|.
T Consensus 186 VIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIl 246 (428)
T TIGR00959 186 VIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVL 246 (428)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEE
Confidence 9999731 1 1123444444443223444456665544333222 223 356666643
No 217
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=58.58 E-value=43 Score=31.99 Aligned_cols=56 Identities=16% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 111 ESRVNLIMTDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 111 ~~~~DlVllD~~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
+..+|+|.+|..-.. ....+.+++||. .++++||++ -.-...+....+.++||+.+
T Consensus 234 ~aG~d~I~vd~a~g~~~~~~~~i~~i~~-~~~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 234 KAGVDVIVIDSSHGHSIYVIDSIKEIKK-TYPDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred HhCCCEEEEECCCCcHhHHHHHHHHHHH-hCCCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 456999999985543 346778888884 457888876 44456888889999999876
No 218
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.33 E-value=1.6e+02 Score=27.61 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=65.3
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-
Q 026247 47 ETFHVLAVDDSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC- 122 (241)
Q Consensus 47 ~~~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~- 122 (241)
.+.+|.+|+-|... ...++.+.+..|+.+..+.+..+....+. ....+|+||+|.-
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~--------------------~~~~~DlVLIDTaG 264 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT--------------------QSKDFDLVLVDTIG 264 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH--------------------HhCCCCEEEEcCCC
Confidence 35689988877642 23345555556777777777777666552 2356999999984
Q ss_pred -CCCCCHHHHHHHHhh---cCCCC-CcEEEEecCCChHHHHHHH----HcCCcce-EeCCCChHHHHHHHHHH
Q 026247 123 -MPGMTGYDLLKRLKV---SSWKD-VPVVVMSSENVPSRVTMCL----EEGAEEF-LLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 123 -mp~~~G~el~~~lr~---~~~~~-~pII~lsa~~~~~~~~~a~----~~Ga~dy-L~KP~~~~~L~~~i~~~ 185 (241)
++ .+... +.+++. ...+. -.++++++........+.+ ..|.+++ ++|=-....+-.++.-+
T Consensus 265 r~~-~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 265 KSP-KDFMK-LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred CCc-cCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHHHH
Confidence 22 23322 233322 12222 3577787776655555443 3467777 45543333444444433
No 219
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=57.42 E-value=1.4e+02 Score=26.53 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=44.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++= ...+.-|+.+++.+. ..+|||+...... ..+.+..|.++|+..+-+.++|...+..++..
T Consensus 279 ad~~v~~-S~~Eg~~~~~lEAma----~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLT-SQSEGFGLSLMEALS----HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEec-ccccccChHHHHHHh----CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 4554443 223444666666654 5789886532211 22345678999999999999999999999854
No 220
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=57.30 E-value=61 Score=27.53 Aligned_cols=61 Identities=11% Similarity=0.250 Sum_probs=33.7
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHH
Q 026247 119 TDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i 182 (241)
+.+.|-.-+++++++.++.. ++++ +|-.-.--+.+....|.++||+ |+.-|..-.++.+..
T Consensus 37 iEiT~~t~~a~~~I~~l~~~-~p~~-~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~~~ 97 (196)
T PF01081_consen 37 IEITLRTPNALEAIEALRKE-FPDL-LVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIEYA 97 (196)
T ss_dssp EEEETTSTTHHHHHHHHHHH-HTTS-EEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHHHH
T ss_pred EEEecCCccHHHHHHHHHHH-CCCC-eeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 33444445677777777743 3443 3333344567788888888885 666676666655443
No 221
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.17 E-value=1.1e+02 Score=30.33 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=59.1
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|.+++-|... ...+..+-...|+.+..+.+..+....+. ....+|+||+|. +
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~--------------------~l~~~DLVLIDT--a 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE--------------------RLRDYKLVLIDT--A 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH--------------------HhccCCEEEecC--C
Confidence 3578888766522 23333333445677777777666666663 224599999997 3
Q ss_pred CCCHH-----HHHHHHhhcCCCCCcEEEEecCCChHHHH----HHHHcCCcce-EeCCCChHHHHHHHHHHh
Q 026247 125 GMTGY-----DLLKRLKVSSWKDVPVVVMSSENVPSRVT----MCLEEGAEEF-LLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 125 ~~~G~-----el~~~lr~~~~~~~pII~lsa~~~~~~~~----~a~~~Ga~dy-L~KP~~~~~L~~~i~~~l 186 (241)
|+... +.+.+|+... ....++++++........ .....+..++ |.|=-....+-.++.-+.
T Consensus 438 G~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii~~f~~~~~~gvILTKlDEt~~lG~aLsv~~ 508 (559)
T PRK12727 438 GMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVV 508 (559)
T ss_pred CcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHHHHHHhhCCeEEEEecCcCccchhHHHHHHH
Confidence 43322 1223444222 234466665554433322 2233455555 455333334444444443
No 222
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=57.17 E-value=1.4e+02 Score=26.34 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=38.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecC----CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSE----NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~----~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
..|++++.. + |..+++.+. ..+|+|++... .......+.+..+-.+++..+- +.++|.+.+..++
T Consensus 252 ~ad~~v~~s---g--~~t~~Eam~----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 252 AADLVISRA---G--ASTVAELAA----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred hcCEEEECC---C--HhHHHHHHH----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 456777532 1 344445444 47898875321 1122222333334457888765 8999999999887
Q ss_pred c
Q 026247 187 K 187 (241)
Q Consensus 187 ~ 187 (241)
.
T Consensus 323 ~ 323 (350)
T cd03785 323 S 323 (350)
T ss_pred c
Confidence 5
No 223
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=57.13 E-value=42 Score=28.57 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=47.9
Q ss_pred CcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC---CCCCHHHHHHHHhhcCCCCCcEEEE
Q 026247 72 SYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM---PGMTGYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 72 g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m---p~~~G~el~~~lr~~~~~~~pII~l 148 (241)
++.|....+.+++.+++ ....|+|-+|... | ..-.++++.+|... .++|
T Consensus 45 ~~~V~ITPT~~ev~~l~----------------------~aGadIIAlDaT~R~Rp-~~l~~li~~i~~~~-----~l~M 96 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALA----------------------EAGADIIALDATDRPRP-ETLEELIREIKEKY-----QLVM 96 (192)
T ss_dssp TSS--BS-SHHHHHHHH----------------------HCT-SEEEEE-SSSS-S-S-HHHHHHHHHHCT-----SEEE
T ss_pred CCCeEECCCHHHHHHHH----------------------HcCCCEEEEecCCCCCC-cCHHHHHHHHHHhC-----cEEe
Confidence 45788888999998887 3568999999866 5 67788899998532 6778
Q ss_pred ecCCChHHHHHHHHcCCc
Q 026247 149 SSENVPSRVTMCLEEGAE 166 (241)
Q Consensus 149 sa~~~~~~~~~a~~~Ga~ 166 (241)
..-+..++...|.++|+|
T Consensus 97 ADist~ee~~~A~~~G~D 114 (192)
T PF04131_consen 97 ADISTLEEAINAAELGFD 114 (192)
T ss_dssp EE-SSHHHHHHHHHTT-S
T ss_pred eecCCHHHHHHHHHcCCC
Confidence 888899999999999986
No 224
>PRK05670 anthranilate synthase component II; Provisional
Probab=56.52 E-value=15 Score=30.39 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=26.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
|||||-...+-..+.++|++.|+.+.....
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 899999999999999999999998877644
No 225
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=56.12 E-value=1.4e+02 Score=26.30 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=44.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.|+.++-.. +.-|+.+++.+. ..+|||+....... +.+..|-.+++..|-+.++|...+..++...
T Consensus 262 ad~~v~ps~--e~~g~~~~Eama----~G~Pvi~~~~~~~~----e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 262 ARAFLFPAE--EDFGIVPVEAMA----SGTPVIAYGKGGAL----ETVIDGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred CCEEEECCc--CCCCchHHHHHH----cCCCEEEeCCCCCc----ceeeCCCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 567665543 444555665554 46899875432222 3345677899999999999999999988643
No 226
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=56.10 E-value=84 Score=27.05 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHhhcC-cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC----C-CCCHHHHHHHHhhc-
Q 026247 66 NLLRVSS-YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM----P-GMTGYDLLKRLKVS- 138 (241)
Q Consensus 66 ~~L~~~g-~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m----p-~~~G~el~~~lr~~- 138 (241)
..|...| +-+.-++++-..+.++ ..-+||.|=+|-.+ . +..+..+++.+-..
T Consensus 147 ~~l~~~~~laLDDfG~g~s~l~~L---------------------~~l~~d~IKiD~~~i~~i~~~~~~~~~~~~lv~~a 205 (255)
T PRK11596 147 ASMCEFGPLWLDDFGTGMANFSAL---------------------SEVRYDYIKVARELFIMLRQSEEGRNLFSQLLHLM 205 (255)
T ss_pred HHHHHcCCEEEecCCCCHHHHHHH---------------------HhCCCCEEEECHHHHHhhhcChhhHHHHHHHHHHH
Confidence 3344455 3345577787788887 55689999999532 1 23344444443221
Q ss_pred CCCCCcEEEEecCCChHHHHHHHHcCCc---c-eEeCCCChHHHHHHH
Q 026247 139 SWKDVPVVVMSSENVPSRVTMCLEEGAE---E-FLLKPVRLSDLEKLQ 182 (241)
Q Consensus 139 ~~~~~pII~lsa~~~~~~~~~a~~~Ga~---d-yL~KP~~~~~L~~~i 182 (241)
..-... |+..+-.+.+....+.+.|++ | |+.||....++...+
T Consensus 206 ~~~~~~-viAeGVEt~eq~~~l~~lG~d~~QGy~~~~P~~~~~~~~l~ 252 (255)
T PRK11596 206 NRYCRG-VIVEGVETPEEWRDVQRSPAFAAQGYFLSRPAPFETLETLP 252 (255)
T ss_pred HHcCCe-EEEEeCCCHHHHHHHHHCCCCEeecCccCCCCCHHHHHHHH
Confidence 111233 556777888899999999998 4 588899988876554
No 227
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=56.04 E-value=65 Score=28.06 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=46.2
Q ss_pred cCCCccEEEEeCCCCCC--CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 110 EESRVNLIMTDYCMPGM--TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~--~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.+...|.|-+|...++. -.++.++.++.. .+.+|||..-+-.+.++..+++..||++...
T Consensus 158 ~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~-~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 158 VDDGFDGIHVDAMYPGKPYADMDLLKILSEE-FNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HHcCCCEEEEeeCCCCCchhhHHHHHHHHHh-cCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 56678988889766663 247888888853 2358999888878889999999999998753
No 228
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=56.00 E-value=90 Score=29.83 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=29.4
Q ss_pred CCCccEEEEeCCCCCCCH--HHHHHHHhh---cCCCCCcEEEEecCCC--hHHHHHHHH--cCCcceE
Q 026247 111 ESRVNLIMTDYCMPGMTG--YDLLKRLKV---SSWKDVPVVVMSSENV--PSRVTMCLE--EGAEEFL 169 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G--~el~~~lr~---~~~~~~pII~lsa~~~--~~~~~~a~~--~Ga~dyL 169 (241)
...+|+||+|.- |... -.+.+.++. ...|+-.++++.+... .....+++. .|.+++|
T Consensus 180 ~~~~DvViIDTa--Gr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 180 KENFDIIIVDTS--GRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred hCCCCEEEEECC--CCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 457999999974 4332 234444443 2334545666655432 223445553 4566553
No 229
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=55.95 E-value=6.6 Score=32.76 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC----CCHHHHHHHH
Q 026247 62 KILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG----MTGYDLLKRL 135 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~----~~G~el~~~l 135 (241)
..+.. |+..|+.+. -++.+...+..+ ..-.||.|-+|..+-. .....+++.+
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l---------------------~~l~~~~ikld~~~~~~~~~~~~~~~l~~l 195 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYL---------------------ASLPPDYIKLDGSLVRDLSDEEAQSLLQSL 195 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHH---------------------HHHCGSEEEEEHHGHTTTTSHHHHHHHHHH
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhh---------------------hhcccccceeecccccccchhhHHHHHHHH
Confidence 44444 667898764 466666666666 3457999999987652 2233444444
Q ss_pred hhc-CCCCCcEEEEecCCChHHHHHHHHcCCc
Q 026247 136 KVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE 166 (241)
Q Consensus 136 r~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~ 166 (241)
... ...++.+ +.++-.+.+....+.+.|++
T Consensus 196 ~~~~~~~~~~v-ia~gVe~~~~~~~l~~~G~~ 226 (236)
T PF00563_consen 196 INLAKSLGIKV-IAEGVESEEQLELLKELGVD 226 (236)
T ss_dssp HHHHHHTT-EE-EEECE-SHHHHHHHHHTTES
T ss_pred HHHhhcccccc-ceeecCCHHHHHHHHHcCCC
Confidence 322 1124444 56777888999999999997
No 230
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=55.82 E-value=49 Score=31.96 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=43.0
Q ss_pred cCCCccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 110 EESRVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
.....|.|.+|..-+... -.+++++||. .++++|||+ -.-...+....+.++|++.+-
T Consensus 234 v~aGVd~i~~D~a~g~~~~~~~~i~~i~~-~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 234 LDAGVDVLVIDTAHGHQVKMISAIKAVRA-LDLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HHhCCCEEEEeCCCCCcHHHHHHHHHHHH-HCCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 345689999999885433 4578888984 457888876 335678889999999997553
No 231
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=55.56 E-value=1.3e+02 Score=26.59 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-CCCCC-HHHHHHHHhhc
Q 026247 62 KILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC-MPGMT-GYDLLKRLKVS 138 (241)
Q Consensus 62 ~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~-mp~~~-G~el~~~lr~~ 138 (241)
..+...-...|.++ +.+++..|+...+ ....++|=++-+ +.... -++....|...
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al----------------------~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ 205 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERAL----------------------EAGADIIGINNRDLKTFEVDLNRTEELAPL 205 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHH----------------------HTT-SEEEEESBCTTTCCBHTHHHHHHHCH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHH----------------------HcCCCEEEEeCccccCcccChHHHHHHHhh
Confidence 34455556789876 4699999987776 234566665543 33322 23444455422
Q ss_pred CCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 139 SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 139 ~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
-..++.+|.-|+-.+.+++.+....|++++|+-
T Consensus 206 ip~~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 206 IPKDVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp SHTTSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred CccceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 223455666677778999999999999999875
No 232
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=55.55 E-value=1.6e+02 Score=26.57 Aligned_cols=96 Identities=19% Similarity=0.302 Sum_probs=59.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEE--E---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTC--V---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~--~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
=+||=+|.|+.....--+.-++.|..++. + .-.+....+| ....||++++-
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll---------------------~~~~PDIlViT--- 160 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI---------------------EEVRPDILVIT--- 160 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH---------------------HHhCCCEEEEe---
Confidence 38999999999888877777878866652 2 3344455555 67789988763
Q ss_pred CCCCHH--------------------HHHHHHhhcCCCCC-cEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 124 PGMTGY--------------------DLLKRLKVSSWKDV-PVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 124 p~~~G~--------------------el~~~lr~~~~~~~-pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
|.||+ +.++..|.- .++. -+|++.+- -...-...+++||+ |=+-|
T Consensus 161 -GHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y-~~~~D~LVIFAGA-CQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 161 -GHDAYSKNKGNYMDLNAYRHSKYFVETVREARKY-VPSLDQLVIFAGA-CQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred -CchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhc-CCCcccEEEEcch-hHHHHHHHHHcCcc-ccCCc
Confidence 33333 344444422 2222 24445443 35566677899997 55555
No 233
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=55.54 E-value=1.3e+02 Score=25.45 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=42.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++-... +.-|..+++.+. ..+|||+..... ..+.+..|-.+++..+.+.+++.+.+.+++..
T Consensus 276 ~di~i~~~~~-~~~~~~~~Ea~~----~g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 276 ADVFVLPSLY-EGFGLVLLEAMA----AGLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred cCEEEecchh-ccccchHHHHHH----cCCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 4676654433 334555656554 467877544322 23334557888999999999999999998753
No 234
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=55.43 E-value=65 Score=29.52 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=46.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhh--cCc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRV--SSY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~--~g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.|+++|-|..+.+.-..++.. .|| .|. ..++|-..++.+ ....+|+||+|..-
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---------------------~~~~~dVii~dssd 205 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---------------------KENPFDVIITDSSD 205 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---------------------ccCCceEEEEecCC
Confidence 478888887777776666653 344 332 456888888776 57889999999999
Q ss_pred CCCCHHHHHHH
Q 026247 124 PGMTGYDLLKR 134 (241)
Q Consensus 124 p~~~G~el~~~ 134 (241)
|.+.+..+..+
T Consensus 206 pvgpa~~lf~~ 216 (337)
T KOG1562|consen 206 PVGPACALFQK 216 (337)
T ss_pred ccchHHHHHHH
Confidence 99998765443
No 235
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=55.26 E-value=1.2e+02 Score=24.88 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=48.6
Q ss_pred EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC-------CHHHHHHHHhhcCCCCCcEEE
Q 026247 75 VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM-------TGYDLLKRLKVSSWKDVPVVV 147 (241)
Q Consensus 75 V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~-------~G~el~~~lr~~~~~~~pII~ 147 (241)
-..+.+.+++.+.. ...+|.|++.--.|.. -|++.+++++.. ..+||++
T Consensus 99 g~S~h~~~e~~~a~----------------------~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~--~~~pv~A 154 (180)
T PF02581_consen 99 GASCHSLEEAREAE----------------------ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA--SPIPVYA 154 (180)
T ss_dssp EEEESSHHHHHHHH----------------------HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH--TSSCEEE
T ss_pred EeecCcHHHHHHhh----------------------hcCCCEEEECCccCCCCCccccccCHHHHHHHHHh--CCCCEEE
Confidence 35688998876553 3567999988776543 388888888754 3489999
Q ss_pred EecCCChHHHHHHHHcCCcceE
Q 026247 148 MSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 148 lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
+-+- +.+.+..+.+.|++++-
T Consensus 155 lGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 155 LGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp ESS---TTTHHHHHHTT-SEEE
T ss_pred EcCC-CHHHHHHHHHcCCCEEE
Confidence 9765 46667788999999864
No 236
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=54.83 E-value=1.5e+02 Score=26.17 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 142 DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 142 ~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
++-+|........+...+|+++|..=|+-||+ +.++...++...-
T Consensus 69 D~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 69 DAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred CEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 44444444455688899999999999999998 4555554444443
No 237
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=54.75 E-value=1.4e+02 Score=29.43 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=63.9
Q ss_pred HHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccC---CCccEEEEeCCC----CCCCHHHHH
Q 026247 62 KILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE---SRVNLIMTDYCM----PGMTGYDLL 132 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~DlVllD~~m----p~~~G~el~ 132 (241)
..+...|+..|+.+. -++.+-..+.++ .. -++|.|=+|-.+ +. + -.++
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L---------------------~~~~~l~~d~iKid~~~~~~~~~-~-~~~~ 598 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYL---------------------NHLKSLPIHMIKLDKSFVKNLPE-D-DAIA 598 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHH---------------------hccCCCCCcEEEECHHHHhcccC-C-HHHH
Confidence 345556778898765 488888899988 45 689999999532 22 2 2233
Q ss_pred HHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHH
Q 026247 133 KRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKL 181 (241)
Q Consensus 133 ~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~ 181 (241)
+.+... ...++.+ +..+-.+.+....+.+.|++ .|+.||....++...
T Consensus 599 ~~i~~~a~~l~~~v-iaegVEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~ 651 (660)
T PRK11829 599 RIISCVSDVLKVRV-MAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQ 651 (660)
T ss_pred HHHHHHHHHcCCeE-EEecCCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHH
Confidence 333221 1124444 45677778888889999997 358899998887553
No 238
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=54.59 E-value=1.7e+02 Score=28.46 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=62.2
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH----H-
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG----Y- 129 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G----~- 129 (241)
-=|....+.+...|...||+++. .....|+|+++.+--..+. +
T Consensus 24 ~~N~~dse~~~~~L~~~G~~~~~--------------------------------~~e~ADvvviNTCtv~~~A~~k~~~ 71 (502)
T PRK14326 24 QMNVHDSERLAGLLEAAGYVRAA--------------------------------EGQDADVVVFNTCAVRENADNRLYG 71 (502)
T ss_pred CCcHHHHHHHHHHHHHCCCEECC--------------------------------CcCCCCEEEEECCCeeehHHHHHHH
Confidence 46777788888889888987763 1234799999988755443 2
Q ss_pred --HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHH-cCCcceEeCCCChHHHHHHHHHHhc
Q 026247 130 --DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLE-EGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 130 --el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~-~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..++.+|. ..+.++|| +++......-.++++ ....|++..+.....+..++.++..
T Consensus 72 ~i~~~~~~k~-~~p~~~Vv-vgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~ 130 (502)
T PRK14326 72 NLGHLAPVKR-ANPGMQIA-VGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARH 130 (502)
T ss_pred HHHHHHHHHH-hCCCCEEE-EECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhh
Confidence 33344442 33566655 555433333444443 3344588888888888887777653
No 239
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=54.52 E-value=52 Score=29.41 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCC------ChHHHHHHHHcCCcceEeCCCChHHHH
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSEN------VPSRVTMCLEEGAEEFLLKPVRLSDLE 179 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~------~~~~~~~a~~~Ga~dyL~KP~~~~~L~ 179 (241)
-+++++.+| .....+|||+||=+. ......+|.++|++++|.-.+..++-.
T Consensus 81 ~lel~~~~r-~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 81 TLELVEEIR-AKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHH-hcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 456777777 345789999997553 234466899999999999755555443
No 240
>PRK04302 triosephosphate isomerase; Provisional
Probab=54.41 E-value=1.4e+02 Score=25.45 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++.+.+|. ...++|||+-.+-...+....+...|+|+++.-
T Consensus 162 ~~~~~ir~-~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 162 DAVEAVKK-VNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 44555663 224689988888778999999999999998764
No 241
>PRK10307 putative glycosyl transferase; Provisional
Probab=53.94 E-value=1.8e+02 Score=26.61 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 141 KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 141 ~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..+|||.....+. ...+... + ++++..|.+.++|.+.+.+++.
T Consensus 330 ~G~PVi~s~~~g~--~~~~~i~-~-~G~~~~~~d~~~la~~i~~l~~ 372 (412)
T PRK10307 330 SGRNVVATAEPGT--ELGQLVE-G-IGVCVEPESVEALVAAIAALAR 372 (412)
T ss_pred cCCCEEEEeCCCc--hHHHHHh-C-CcEEeCCCCHHHHHHHHHHHHh
Confidence 5789976543221 1112223 4 7899999999999999998874
No 242
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=53.92 E-value=1.1e+02 Score=27.13 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=41.7
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
....||++|+=---|..-|-.-++.+-.. .++|.|++|........ .+++..-.+||.-+
T Consensus 57 ~~~~pDf~i~isPN~a~PGP~~ARE~l~~--~~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk 116 (277)
T PRK00994 57 EEWKPDFVIVISPNPAAPGPKKAREILKA--AGIPCIVIGDAPGKKVK-DAMEEQGLGYIIVK 116 (277)
T ss_pred HhhCCCEEEEECCCCCCCCchHHHHHHHh--cCCCEEEEcCCCccchH-HHHHhcCCcEEEEe
Confidence 46789999987766777777766766432 47899999988776655 55555555665543
No 243
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=53.88 E-value=1.3e+02 Score=26.02 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=38.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++-... +.-|..+++.+. ..+|+|+ +...... +.+.. .+++..+.+.+++.+.+..++.
T Consensus 263 ad~~v~~s~~-e~~~~~~~Ea~a----~G~PvI~-~~~~~~~---e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 263 ADLFVLSSAW-EGFGLVVAEAMA----CELPVVA-TDAGGVR---EVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred hceEEecccc-cCCChHHHHHHH----cCCCEEE-ecCCChh---hEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 4666654332 233666666665 4678875 3322221 12222 5678889999999999999873
No 244
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=53.86 E-value=1.5e+02 Score=25.90 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=34.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-----cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSS-----YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g-----~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.+|.+||-++.+....++.+...+ -.+. ...++.+.++. ....||+||+|..
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----------------------~~~~yDvIi~D~~ 154 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----------------------TENTFDVIIVDST 154 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----------------------CCCCccEEEEeCC
Confidence 468888888888777777764321 1122 23444444432 2457999999986
Q ss_pred CCC
Q 026247 123 MPG 125 (241)
Q Consensus 123 mp~ 125 (241)
-|.
T Consensus 155 ~~~ 157 (270)
T TIGR00417 155 DPV 157 (270)
T ss_pred CCC
Confidence 553
No 245
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.83 E-value=49 Score=28.64 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=43.3
Q ss_pred ccEEEEeCCCCCC-CH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 114 VNLIMTDYCMPGM-TG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 114 ~DlVllD~~mp~~-~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-.+|++|+..-++ .| +++++.+... ..+||++--.-.+.+++.++++.|+++.+.
T Consensus 163 ~~ii~tdi~~dGt~~G~~~~li~~l~~~--~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPNFELTGQLVKA--TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred CEEEEecccCcCCCCccCHHHHHHHHHh--CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3699999977553 33 5677777643 478999888888899999999999999886
No 246
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=53.72 E-value=1e+02 Score=28.69 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=40.6
Q ss_pred CCccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 112 SRVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
..+|+|++|..-.... -++++++||. .+|+++|| .-.-...+.....+.+|||..
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~-~~P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKARE-AWPDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHH-hCCCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 4689999998764433 3678899985 45777654 455566788888899999965
No 247
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=53.68 E-value=1.5e+02 Score=25.86 Aligned_cols=82 Identities=10% Similarity=-0.028 Sum_probs=49.6
Q ss_pred EEEEE-eCCHHH---HHHHHHHHhhcCcEEEE-------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 50 HVLAV-DDSLID---RKILENLLRVSSYQVTC-------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 50 ~VLIV-DDd~~~---~~~l~~~L~~~g~~V~~-------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
+|.++ +|+..- ...++..+++.|.+|.. ..+....+..+ ....||+|+
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l---------------------~~~~pd~v~ 197 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAA---------------------AAGGPDALV 197 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH---------------------HhcCCCEEE
Confidence 44443 444433 34456677778887653 23566666666 566799998
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 119 TDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
+-.. ..++..+++.++.... ..+++..+......
T Consensus 198 ~~~~--~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~ 231 (312)
T cd06346 198 VIGY--PETGSGILRSAYEQGL-FDKFLLTDGMKSDS 231 (312)
T ss_pred Eecc--cchHHHHHHHHHHcCC-CCceEeeccccChH
Confidence 7643 4478888888885443 55666554433333
No 248
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=53.51 E-value=1.7e+02 Score=26.37 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=54.7
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAV-DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIV-DDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.++++++ .++...+..+++..+..+-.|...+..++..+++ ..-|+++++ +
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~-----------------------~~aD~~v~~---~-- 281 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELF-----------------------RVTSCMITK---P-- 281 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHH-----------------------HhccEEEeC---C--
Confidence 4555544 4455455555555544443344444333333444 135777753 2
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCC-Ch-HHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSEN-VP-SRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~-~~-~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|..+++.+- ..+|+|+..... .. +......+.|+ ...+.+.++|.+.+..++..
T Consensus 282 gg~t~~EA~a----~g~PvI~~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 282 GGITLSEAAA----LGVPVILYKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQD 338 (380)
T ss_pred CchHHHHHHH----hCCCEEECCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHCC
Confidence 2665556554 468877653222 11 11222234454 33356788999988888753
No 249
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=53.31 E-value=1.9e+02 Score=26.88 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=64.1
Q ss_pred ccEEEEEeCCH-----HHHHHHHHHHhhcCc--EEEEECC--HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 48 TFHVLAVDDSL-----IDRKILENLLRVSSY--QVTCVDS--GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 48 ~~~VLIVDDd~-----~~~~~l~~~L~~~g~--~V~~~~~--~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
.++++|+.+.. .....++++.+..|. .|+..+. -++..++++ ..|+.+
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~-----------------------~adv~v 329 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELS-----------------------TASIGL 329 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHH-----------------------hCeEEE
Confidence 46777776532 244556666555554 3555543 455555551 356666
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 119 TDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.- ...+.=|+.+++.+- ..+|+|+....+...++..-...|..+|+.. +.+++.+.+.+++..
T Consensus 330 ~~-s~~E~Fgi~~lEAMa----~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 330 HT-MWNEHFGIGVVEYMA----AGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred EC-CccCCcccHHHHHHH----cCCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 53 233444777777665 4677775543222222221111578889863 899999999998853
No 250
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=53.28 E-value=1.5e+02 Score=26.21 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=52.2
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCcEEEEECCH----HHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 47 ETFHVLAVDDSLI---DRKILENLLRVSSYQVTCVDSG----DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 47 ~~~~VLIVDDd~~---~~~~l~~~L~~~g~~V~~~~~~----~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
.+.+|++||-|.. ....+..+.+..|..+.....+ ..+.+.+... ....+|+||+
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~------------------~~~~~D~ViI 160 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA------------------KARNIDVVLI 160 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH------------------HHCCCCEEEE
Confidence 3568999997753 2344555566667655543222 2112222100 3456999999
Q ss_pred eCCCCCCCH--HHHHHHHh---hcC------CCCCcEEEEecCCChHHHHHH---H-HcCCcceEe
Q 026247 120 DYCMPGMTG--YDLLKRLK---VSS------WKDVPVVVMSSENVPSRVTMC---L-EEGAEEFLL 170 (241)
Q Consensus 120 D~~mp~~~G--~el~~~lr---~~~------~~~~pII~lsa~~~~~~~~~a---~-~~Ga~dyL~ 170 (241)
|. |+... -.++..|+ ... .++-.++++++....+....+ . ..|.+++|.
T Consensus 161 DT--~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 161 DT--AGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred eC--CCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 97 33322 22222222 111 145557777776544433333 2 356777643
No 251
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=53.26 E-value=62 Score=28.27 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=44.1
Q ss_pred cEEEEEeCCH------HHHHHHHHHHhhcCcEEEEECCHH-HHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVDDSL------IDRKILENLLRVSSYQVTCVDSGD-KALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVDDd~------~~~~~l~~~L~~~g~~V~~~~~~~-eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
|+||++-... .....+...|...|++|+.+.... .....+ ....||+|.+-+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---------------------~~~~~diih~~~ 59 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKI---------------------EIINADIVHLHW 59 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhCh---------------------hcccCCEEEEEc
Confidence 4777775543 355667777888899887644333 232333 567899998866
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEE
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~l 148 (241)
.....-....+.++. ..+|+|+.
T Consensus 60 ~~~~~~~~~~~~~~~----~~~~~v~~ 82 (365)
T cd03825 60 IHGGFLSIEDLSKLL----DRKPVVWT 82 (365)
T ss_pred cccCccCHHHHHHHH----cCCCEEEE
Confidence 444444444444442 35676643
No 252
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=53.01 E-value=1.7e+02 Score=26.03 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=56.9
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcC--c-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDDSLIDRKILENLL----RVSS--Y-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L----~~~g--~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.|||.|+|-...-.+...+ +..+ . -...+.+.+++.+.+ ...+|.|.+|-.
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~----------------------~~gaDyI~ld~~ 211 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEAL----------------------EAGADIIMLDNM 211 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHH----------------------HcCCCEEEECCc
Confidence 5788887755442222222 2233 2 235688999998876 345899999953
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
+.+.++++.......+|+++ ++--..+.+.+..+.|++.+
T Consensus 212 -----~~e~l~~~~~~~~~~ipi~A-iGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 212 -----SPEELREAVALLKGRVLLEA-SGGITLENIRAYAETGVDYI 251 (268)
T ss_pred -----CHHHHHHHHHHcCCCCcEEE-ECCCCHHHHHHHHHcCCCEE
Confidence 24555665532212577654 44567888888999999866
No 253
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=52.93 E-value=50 Score=31.83 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=42.0
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 111 ESRVNLIMTDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 111 ~~~~DlVllD~~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
....|++.+|..-.. ..-++.+++|+. .++++|||+ -.-.+.+....+.++|++.+.
T Consensus 238 ~agvdvivvD~a~g~~~~vl~~i~~i~~-~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 238 EAGVDVLVVDTAHGHSEGVLDRVREIKA-KYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HhCCCEEEEECCCCcchhHHHHHHHHHh-hCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 456889999975332 345678888884 446788875 556678889999999998663
No 254
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=52.90 E-value=1.7e+02 Score=26.21 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=47.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE-EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ-VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~-V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+|.-||-++......++-.+..|.. +. ...+..+.... ....||+|++| |..
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----------------------~~~~~D~Vv~d---PPr 250 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----------------------QGEVPDLVLVN---PPR 250 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----------------------cCCCCeEEEEC---CCC
Confidence 47888888888888777777666652 33 34555443321 12359999999 444
Q ss_pred CHH--HHHHHHhhcCCCCCcEEEEecCCChHHHHHH
Q 026247 127 TGY--DLLKRLKVSSWKDVPVVVMSSENVPSRVTMC 160 (241)
Q Consensus 127 ~G~--el~~~lr~~~~~~~pII~lsa~~~~~~~~~a 160 (241)
.|+ ++++.|.... ..-|++.+..........
T Consensus 251 ~G~~~~~~~~l~~~~---~~~ivyvsc~p~t~~rd~ 283 (315)
T PRK03522 251 RGIGKELCDYLSQMA---PRFILYSSCNAQTMAKDL 283 (315)
T ss_pred CCccHHHHHHHHHcC---CCeEEEEECCcccchhHH
Confidence 553 5666665322 234455454433333333
No 255
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=52.83 E-value=1.6e+02 Score=25.74 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=43.9
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
....||.|++=---|..-|-.-.+.+-+. .++|.|+++.-.......+.-+.|.-..|.|+
T Consensus 57 e~~~pDfvi~isPNpaaPGP~kARE~l~~--s~~PaiiigDaPg~~vkdeleeqGlGYIivk~ 117 (277)
T COG1927 57 EEFNPDFVIYISPNPAAPGPKKAREILSD--SDVPAIIIGDAPGLKVKDELEEQGLGYIIVKA 117 (277)
T ss_pred HhcCCCEEEEeCCCCCCCCchHHHHHHhh--cCCCEEEecCCccchhHHHHHhcCCeEEEecC
Confidence 56789999998888888898888887643 57899988877655555555566664445554
No 256
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=52.80 E-value=59 Score=26.59 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=47.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhc--CcEEEEECCH----HHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVS--SYQVTCVDSG----DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~--g~~V~~~~~~----~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
..+.+|.++-..+.....+.+.|+.. |..++.+.++ .+.-+.+..+ ....||+|++
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I------------------~~~~pdiv~v 107 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRI------------------NASGPDIVFV 107 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHH------------------HHcCCCEEEE
Confidence 34569999999999888888888754 5666644332 2333333222 5678999999
Q ss_pred eCCCCCCCHHHHHHHHh
Q 026247 120 DYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 120 D~~mp~~~G~el~~~lr 136 (241)
-+.+|... .++.+.+
T Consensus 108 glG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 108 GLGAPKQE--RWIARHR 122 (172)
T ss_pred ECCCCHHH--HHHHHHH
Confidence 99999855 3445555
No 257
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=52.64 E-value=1.3e+02 Score=26.57 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcC--cE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDDSLIDRKILENLL----RVSS--YQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L----~~~g--~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.|||.|+|-...-.+...+ +..| .. ...+.+.+++.+.+ ...+|.|.+|-.
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~----------------------~~gaDyI~ld~~ 207 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAA----------------------EAGADIIMLDNM 207 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHH----------------------HcCCCEEEECCC
Confidence 5888888755443222222 2234 22 34688999998886 345899999864
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-| +-++++.......+||++ ++--..+.+....+.|++.+-.
T Consensus 208 ~~-----e~lk~~v~~~~~~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 208 KP-----EEIKEAVQLLKGRVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CH-----HHHHHHHHHhcCCCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 33 334443322112367654 5556788888999999986643
No 258
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=52.54 E-value=25 Score=31.18 Aligned_cols=53 Identities=19% Similarity=0.376 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecC------CChHHHHHHHHcCCcceEeCCCChHHHHHH
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSE------NVPSRVTMCLEEGAEEFLLKPVRLSDLEKL 181 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~------~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~ 181 (241)
.+++++++|. ..+++|+|+||=+ +-.....+|.++|++++|.-....++-...
T Consensus 74 ~~~~~~~ir~-~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~ 132 (259)
T PF00290_consen 74 IFELVKEIRK-KEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEEL 132 (259)
T ss_dssp HHHHHHHHHH-HCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHH
T ss_pred HHHHHHHHhc-cCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 4677788873 3478999999864 334567788899999999986666554443
No 259
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=52.41 E-value=74 Score=28.65 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=46.0
Q ss_pred EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCCh
Q 026247 75 VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVP 154 (241)
Q Consensus 75 V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~ 154 (241)
.+.+.+.+++.+.+ +..+|+|++|- |..-+=-++.+.++. ..+. .++-.|+--..
T Consensus 193 eVEv~tleqa~ea~----------------------~agaDiI~LDn-~~~e~l~~av~~~~~-~~~~-~~leaSGGI~~ 247 (284)
T PRK06096 193 VVEADTPKEAIAAL----------------------RAQPDVLQLDK-FSPQQATEIAQIAPS-LAPH-CTLSLAGGINL 247 (284)
T ss_pred EEECCCHHHHHHHH----------------------HcCCCEEEECC-CCHHHHHHHHHHhhc-cCCC-eEEEEECCCCH
Confidence 34578999999988 34589999994 332222233333331 1223 36677888889
Q ss_pred HHHHHHHHcCCcce
Q 026247 155 SRVTMCLEEGAEEF 168 (241)
Q Consensus 155 ~~~~~a~~~Ga~dy 168 (241)
+.+.+....|+|-+
T Consensus 248 ~ni~~yA~tGvD~I 261 (284)
T PRK06096 248 NTLKNYADCGIRLF 261 (284)
T ss_pred HHHHHHHhcCCCEE
Confidence 99999999998754
No 260
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=52.37 E-value=1.4e+02 Score=26.63 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
++.+.++++...+++|||....-.+.+++.+++.+||+...
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67777777543347999999999999999999999999653
No 261
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=52.27 E-value=32 Score=30.15 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=39.2
Q ss_pred EEEEeCCHHHHH----------HHHHHHhhcCcEEEEEC--CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 51 VLAVDDSLIDRK----------ILENLLRVSSYQVTCVD--SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 51 VLIVDDd~~~~~----------~l~~~L~~~g~~V~~~~--~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
|.|||.|..... -|...++.+||+|..+. +.++..+.+... +..+.+|.+||
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~----------------~~~~~rP~~II 237 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKA----------------KGSKGRPTVII 237 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhh----------------hccCCCCeEEE
Confidence 788888776443 47788888999998875 566666666211 11234899999
Q ss_pred EeCCC
Q 026247 119 TDYCM 123 (241)
Q Consensus 119 lD~~m 123 (241)
.|..+
T Consensus 238 a~Tvk 242 (243)
T COG3959 238 AKTVK 242 (243)
T ss_pred Eeccc
Confidence 98753
No 262
>PRK09776 putative diguanylate cyclase; Provisional
Probab=52.13 E-value=68 Score=33.39 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=65.5
Q ss_pred HHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-----CCHHHHHHH
Q 026247 62 KILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-----MTGYDLLKR 134 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-----~~G~el~~~ 134 (241)
....+.|+..|+.+. -++++...+.++ .+-++|.|=+|..+-. .+...+++.
T Consensus 977 ~~~~~~l~~~G~~~~lddfg~g~~~~~~l---------------------~~~~~d~iKid~~~~~~~~~~~~~~~~~~~ 1035 (1092)
T PRK09776 977 SRLVQKLRLAGCRVVLSDFGRGLSSFNYL---------------------KAFMADYLKLDGELVANLHGNLMDEMLISI 1035 (1092)
T ss_pred HHHHHHHHHCCcEEEEcCCCCCchHHHHH---------------------HhCCCCEEEECHHHHHhHhcChhhHHHHHH
Confidence 344566778898775 478888888888 5668999999955421 123444554
Q ss_pred Hhhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHH
Q 026247 135 LKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKL 181 (241)
Q Consensus 135 lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~ 181 (241)
+... ..-++.+| ..+-.+.+....+.+.|++ .|+.||...+++.+.
T Consensus 1036 i~~~~~~~~~~~i-aegVEt~~~~~~l~~~g~~~~QG~~~~~P~~~~~~~~~ 1086 (1092)
T PRK09776 1036 IQGHAQRLGMKTI-AGPVELPLVLDTLSGIGVDLAYGYAIARPQPLDLLLNS 1086 (1092)
T ss_pred HHHHHHHcCCcEE-ecccCCHHHHHHHHHcCCCEEeccccCCCCcHHHHHhh
Confidence 4322 11244444 5566778888889999997 458899988877654
No 263
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=51.79 E-value=1.9e+02 Score=26.24 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEE--ECCHH---HHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTC--VDSGD---KALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~--~~~~~---eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+||=+|.|+.....--++-+.+|..+.. +.-.+ ...++| ....||++++-
T Consensus 107 kVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll---------------------~~~~PDIlViT---- 161 (287)
T PF05582_consen 107 KVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL---------------------EEYRPDILVIT---- 161 (287)
T ss_pred eEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH---------------------HHcCCCEEEEe----
Confidence 8999999999888887888888876653 33333 334444 67789988763
Q ss_pred CCCHH--------------------HHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 125 GMTGY--------------------DLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 125 ~~~G~--------------------el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
|.||+ +.++..|.- ...+- +|++.+ .-...-...+++||+ |=+-|
T Consensus 162 GHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~-LVIfAG-ACQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 162 GHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDD-LVIFAG-ACQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred CchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCccc-EEEEcc-hhHHHHHHHHHcCcc-ccCCc
Confidence 34442 344445532 22233 344444 335566677899997 55555
No 264
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=51.74 E-value=2e+02 Score=26.91 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=39.6
Q ss_pred cCCCccEEEEeCCC-------CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 110 EESRVNLIMTDYCM-------PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 110 ~~~~~DlVllD~~m-------p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.+...|+|.++... +..+...+.+.++. .++|||+ ..-.+.+...+++++|+|..+.
T Consensus 151 ~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~---~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 151 VEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE---LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred HHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH---CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 56678999997642 22256666666663 3688876 4455678888899999998754
No 265
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=51.74 E-value=91 Score=24.90 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCCccEEEEeCCCCCCC-----HHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 111 ESRVNLIMTDYCMPGMT-----GYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~-----G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
...+|+||+|. |+.. .++.+..+.....++..++++.+..
T Consensus 80 ~~~~d~viiDt--~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~ 124 (173)
T cd03115 80 EENFDVVIVDT--AGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT 124 (173)
T ss_pred hCCCCEEEEEC--cccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC
Confidence 45799999997 4432 3333333332223455566665544
No 266
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=51.57 E-value=1.8e+02 Score=26.12 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=52.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
...++++||....+..|..+=-...+....-.+..+....+-... ....-=.++.|..||..+
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l-----------------~~g~~valVSDAG~P~IS 92 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLL-----------------KKGKSVALVSDAGTPLIS 92 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHH-----------------hcCCeEEEEecCCCCccc
Confidence 456999999998876665432211111112245555444431110 333345789999999865
Q ss_pred --HHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 128 --GYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 128 --G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
|+.+++..+. .+++|+.+.+.+
T Consensus 93 DPG~~LV~~a~~---~gi~V~~lPG~s 116 (275)
T COG0313 93 DPGYELVRAARE---AGIRVVPLPGPS 116 (275)
T ss_pred CccHHHHHHHHH---cCCcEEecCCcc
Confidence 9999999885 357888886653
No 267
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=51.42 E-value=66 Score=22.16 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=25.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
.+.|+-|++....-+..+++..||++....
T Consensus 28 ~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 28 ILEVISDCPQSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred EEEEEecCchHHHHHHHHHHHcCCEEEEEE
Confidence 477788889999999999999999997543
No 268
>PRK15320 transcriptional activator SprB; Provisional
Probab=51.23 E-value=42 Score=29.03 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=66.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc--CcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRVS--SYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~--g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.|+|-.|+=.+.-.++.++++. |..|.+|.+....+..+ ...||.+++=.--|. .
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l----------------------~~~p~a~lil~l~p~-e 59 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSL----------------------SDMPDAGLILALNPH-E 59 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHH----------------------hhCCCceEEEeeCch-h
Confidence 4778888888888999999754 45677787877777776 345776665333333 3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
-.=+...+++ ..++-||++++..---.++.-..-.|+-+|+.|
T Consensus 60 h~~lf~~l~~-~l~~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 60 HVYLFHALLT-RLQNRKVLVVADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred HHHHHHHHHH-HcCCCceEEEecceeehhhhhhhhhcchhHHHH
Confidence 3334455553 346789999987765555555556788888876
No 269
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=51.03 E-value=1.4e+02 Score=24.51 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCcEEE----EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-----CCCCCHHHHH
Q 026247 62 KILENLLRVSSYQVT----CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC-----MPGMTGYDLL 132 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~----~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~-----mp~~~G~el~ 132 (241)
..+.+..+..|..+. .+.+..+++..+ ....|.|.+... .....+.+.+
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~----------------------~~~~d~v~~~~~~~~~~~~~~~~~~~i 150 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL----------------------KLGVDIVILHRGIDAQAAGGWWPEDDL 150 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH----------------------HCCCCEEEEcCcccccccCCCCCHHHH
Confidence 344455555665443 456777777643 346788777421 1124557777
Q ss_pred HHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 133 KRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 133 ~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+.++.. .++||++.-+ -..+.+.++++.|++.++.-
T Consensus 151 ~~~~~~--~~~~i~~~GG-I~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 151 KKVKKL--LGVKVAVAGG-ITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HHHHhh--cCCCEEEECC-cCHHHHHHHHhcCCCEEEEe
Confidence 777742 4678765544 45888999999999988653
No 270
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=51.00 E-value=52 Score=29.83 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=43.1
Q ss_pred CHHHHHHHHhhcCCCCCcEE--EEecCCChHHHHHHHHcCCcceE-----eCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVV--VMSSENVPSRVTMCLEEGAEEFL-----LKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII--~lsa~~~~~~~~~a~~~Ga~dyL-----~KP~~~~~L~~~i~~~l~ 187 (241)
.+++++++++.. ..+||| +...-...+....+++.|+++++ .|.-++......+...+.
T Consensus 190 ~~~elL~ei~~~--~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 190 APYELVKEVAEL--GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred CCHHHHHHHHHh--CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 478888988853 358998 66666689999999999999884 344466666666666554
No 271
>PLN02591 tryptophan synthase
Probab=50.97 E-value=1.7e+02 Score=25.69 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=60.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEE-EE-CCH-HHHHHHHhhhcccccCCCCCCCcccccccCCCccEE-EEe-CCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVT-CV-DSG-DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI-MTD-YCMP 124 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~-~~~-~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV-llD-~~mp 124 (241)
-|+|.|=.......+...++..|.... ++ .+. ++-+..+. ......| ++- ..-.
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia---------------------~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIA---------------------EASEGFVYLVSSTGVT 167 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH---------------------HhCCCcEEEeeCCCCc
Confidence 477777777677777788888887654 33 333 33334431 1112222 111 1111
Q ss_pred C------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 125 G------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 125 ~------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
+ -+-.++++++|+ ..++||++=.+-.+.+.+.+..+.|||+.++-.
T Consensus 168 G~~~~~~~~~~~~i~~vk~--~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 168 GARASVSGRVESLLQELKE--VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCCcCCchhHHHHHHHHHh--cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 1 122455777774 368899876666678899999999999999864
No 272
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=50.94 E-value=73 Score=29.04 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|..-.. ....++++++|.. .+++||++ ..-...+....+.++|+|....
T Consensus 104 eagv~~I~vd~~~G~~~~~~~~i~~ik~~-~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 104 EAGVDVIVIDSAHGHSVYVIEMIKFIKKK-YPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHHHHHH-CCCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 456899999985432 2346788888853 35677765 3445678888999999986654
No 273
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.89 E-value=1.9e+02 Score=26.06 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=39.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.+|+||+ -|.||- +++..|......+||+-+- .|=-+||. .++.+++...+.+++.+.
T Consensus 64 ~~dlvi~----lGGDGT-~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADMVIS----IGGDGT-FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 5788877 377884 3455553333578988664 25567776 677889999999998765
No 274
>PRK10551 phage resistance protein; Provisional
Probab=50.81 E-value=1.6e+02 Score=28.60 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=63.8
Q ss_pred HHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC----CCCC-HHHHHHHHh
Q 026247 64 LENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM----PGMT-GYDLLKRLK 136 (241)
Q Consensus 64 l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m----p~~~-G~el~~~lr 136 (241)
.-+.|+..|+.+. .+++|...+.++ ..-++|.|=+|-.. .... .-.+++.+-
T Consensus 402 ~l~~Lr~~G~~ialDDFGtg~ssl~~L---------------------~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii 460 (518)
T PRK10551 402 LFAWLHSQGIEIAIDDFGTGHSALIYL---------------------ERFTLDYLKIDRGFIQAIGTETVTSPVLDAVL 460 (518)
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHH---------------------HhCCCCEEEECHHHHhhhccChHHHHHHHHHH
Confidence 3355788998775 488899999998 56689999999532 2211 122333332
Q ss_pred hc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHHH
Q 026247 137 VS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 137 ~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~i 182 (241)
.. ..-++.+ +..+-.+.+....+.+.|++ .|+.||...+++...+
T Consensus 461 ~la~~lgi~v-VAEGVEt~~q~~~L~~~Gv~~~QGy~f~kP~~~~~~~~~l 510 (518)
T PRK10551 461 TLAKRLNMLT-VAEGVETPEQARWLRERGVNFLQGYWISRPLPLEDFVRWL 510 (518)
T ss_pred HHHHHCCCEE-EEEeCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHH
Confidence 21 1123333 46677778888888999986 4478999998876654
No 275
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=50.61 E-value=1.5e+02 Score=24.91 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCccEEEEeCCCCC-------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 112 SRVNLIMTDYCMPG-------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 112 ~~~DlVllD~~mp~-------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
...|.|+++-.-.+ ...++++++++.. .++||++.-+-...+.+.+++..|+++...-
T Consensus 121 ~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~--~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 121 AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA--VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH--hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 34788887643211 1456788888743 3689988777666788999999999988654
No 276
>PRK10867 signal recognition particle protein; Provisional
Probab=50.59 E-value=2.3e+02 Score=27.13 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=50.2
Q ss_pred ccEEEEEeCCHHHHH---HHHHHHhhcCcEEEEEC---CHHHHHH-HHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVDDSLIDRK---ILENLLRVSSYQVTCVD---SGDKALE-YLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~---~l~~~L~~~g~~V~~~~---~~~eal~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+.+|++|+-|..-.. .+..+....|..+.... +..+... .+.. .....+|+||+|
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~------------------a~~~~~DvVIID 190 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE------------------AKENGYDVVIVD 190 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH------------------HHhcCCCEEEEe
Confidence 568999987754322 34444455666555432 3333221 2210 034569999999
Q ss_pred CC--CC-CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHH--HHHHH--cCCcceEe
Q 026247 121 YC--MP-GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV--TMCLE--EGAEEFLL 170 (241)
Q Consensus 121 ~~--mp-~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~--~~a~~--~Ga~dyL~ 170 (241)
.- ++ +-..++-+..+.....|+--++++.+....+.. .+.+. .+.+++|.
T Consensus 191 TaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIl 247 (433)
T PRK10867 191 TAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVIL 247 (433)
T ss_pred CCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEE
Confidence 73 11 112333334444222344335556554422222 22232 55666644
No 277
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=50.54 E-value=1.8e+02 Score=29.16 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=72.0
Q ss_pred ccCCccEEEEEe-----CCHHHHHHHHHHHhhcCcEEEE---ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 44 QQQETFHVLAVD-----DSLIDRKILENLLRVSSYQVTC---VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 44 ~~~~~~~VLIVD-----Dd~~~~~~l~~~L~~~g~~V~~---~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
......+|.++- .+..-.....++|..-||++.. +.+.+++.+.. .....+
T Consensus 490 ~~g~rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~---------------------~~sga~ 548 (619)
T TIGR00642 490 SVGERPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAF---------------------KKAGAQ 548 (619)
T ss_pred hcCCCCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHH---------------------HhcCCC
Confidence 445566788874 3444455677788888898873 56677777766 344456
Q ss_pred EEEEeCCCCC--CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHH
Q 026247 116 LIMTDYCMPG--MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 116 lVllD~~mp~--~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
++++--.-.. -.+-++++.||... ...|++.+.... ......+|+|+||.--.+.-+....+.
T Consensus 549 i~viCssD~~Y~~~a~~~~~al~~ag---~~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~ 613 (619)
T TIGR00642 549 VAVLCSSDKVYAQQGLEVAKALKAAG---AKALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTL 613 (619)
T ss_pred EEEEeCCCcchHHHHHHHHHHHHhCC---CCEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHH
Confidence 5555432221 34667888888532 237778877643 334788999999988766554444333
No 278
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=50.44 E-value=74 Score=27.76 Aligned_cols=93 Identities=23% Similarity=0.328 Sum_probs=58.9
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-CCH-H
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-MTG-Y 129 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~~G-~ 129 (241)
|=|.+=..++..+|+..||+|+-.+ ..++.++.. .+..||+|-+-.-|-. |.+ .
T Consensus 115 DvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a---------------------~e~k~d~v~~SalMTttm~~~~ 173 (227)
T COG5012 115 DVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKA---------------------KELKPDLVSMSALMTTTMIGMK 173 (227)
T ss_pred cHHHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHH---------------------HHcCCcEEechHHHHHHHHHHH
Confidence 4445556778899999999998755 345555555 4567999988877753 444 3
Q ss_pred HHHHHHhhcCCCCCcEEEEec-CCChHHHHHHHHcCCcceEeC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSS-ENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa-~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++++.|++...++ |++++.+ ..-.+. -+-+.|+|.|-.-
T Consensus 174 ~viE~L~eeGiRd-~v~v~vGGApvtq~--~a~~iGAD~~~~d 213 (227)
T COG5012 174 DVIELLKEEGIRD-KVIVMVGGAPVTQD--WADKIGADAYAED 213 (227)
T ss_pred HHHHHHHHcCCcc-CeEEeecCccccHH--HHHHhCCCccCcC
Confidence 5677777655443 5555533 212222 2457788888643
No 279
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=50.32 E-value=64 Score=29.47 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCc------ceEeC-CCChHHHHHHHHHHhcCCCC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE------EFLLK-PVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~------dyL~K-P~~~~~L~~~i~~~l~~~~~ 191 (241)
.+++.++.....++|||-+.+-.+.+++.+.+.+||+ .++.+ |.-..++.+-+.+++.....
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~ 297 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGF 297 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCC
Confidence 4556666554468999999999999999999999997 56777 88888999999998865443
No 280
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=50.23 E-value=1.5e+02 Score=25.24 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=47.5
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC------CCCCCCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY------CMPGMTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~------~mp~~~G~el~~~lr~~~~~~~pII~ls 149 (241)
..+++.++++... +..+|+|=+-+ ..+...-++++++|.. ..+|||+=-
T Consensus 97 ADist~ee~~~A~----------------------~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~---~~~pvIaEG 151 (192)
T PF04131_consen 97 ADISTLEEAINAA----------------------ELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQ---ADVPVIAEG 151 (192)
T ss_dssp EE-SSHHHHHHHH----------------------HTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHH---TTSEEEEES
T ss_pred eecCCHHHHHHHH----------------------HcCCCEEEcccccCCCCCCCCCCCHHHHHHHHh---CCCcEeecC
Confidence 3578999998875 34588876543 1123346889999885 268888777
Q ss_pred cCCChHHHHHHHHcCCcceEe
Q 026247 150 SENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 150 a~~~~~~~~~a~~~Ga~dyL~ 170 (241)
....++...+++++||+..++
T Consensus 152 ri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 152 RIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp S--SHHHHHHHHHTT-SEEEE
T ss_pred CCCCHHHHHHHHhcCCeEEEE
Confidence 778899999999999998865
No 281
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=49.95 E-value=1.8e+02 Score=25.68 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcc------eEeCCCChHHHHHHHHHHhcCCCC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE------FLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~d------yL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
+.+.+++.. -++|||..-.-.+.++..+++..||+. ++.+|.-...+..-+.+++.....
T Consensus 224 ~~v~~i~~~--~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 224 RMVYDVYKM--VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 566667643 358999988888899999999999985 577887777777778877765443
No 282
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=49.92 E-value=1.1e+02 Score=28.79 Aligned_cols=74 Identities=12% Similarity=0.215 Sum_probs=44.3
Q ss_pred CCccEEEEeCC----CCCCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 112 SRVNLIMTDYC----MPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 112 ~~~DlVllD~~----mp~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
...|+|++..+ ......++.++++... ..+..+ |++++......-.++.+. ..|++.-+-....+.+.+..+.
T Consensus 36 ~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~-vvv~Gc~a~~~~ee~~~~-~~d~vvg~~~~~~~~~~l~~~~ 113 (434)
T PRK14330 36 EEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLI-IGVAGCVAEKEREKLLKR-GADFVIGTRAVPKVTEAVKRAL 113 (434)
T ss_pred ccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCE-EEEECccccCchhhHHhc-CCcEEEcCCCHHHHHHHHHHHh
Confidence 35799999742 2223456677777211 113444 556665544444556666 5678888887788777777765
Q ss_pred c
Q 026247 187 K 187 (241)
Q Consensus 187 ~ 187 (241)
.
T Consensus 114 ~ 114 (434)
T PRK14330 114 N 114 (434)
T ss_pred c
Confidence 4
No 283
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.69 E-value=69 Score=27.62 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=40.5
Q ss_pred cEEEEeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 115 NLIMTDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 115 DlVllD~~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.+|++|+.--+ +.|++ .+... .+++|+|+--+-.+.++..++.+.|+++.+.
T Consensus 158 ~ii~t~i~~dGt~~G~d---~l~~~-~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 158 RFIYTSIERDGTLTGIE---EIERF-WGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred EEEEEeccchhcccCHH---HHHHh-cCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 59999998876 47877 33212 2478999888888899999999999998765
No 284
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=49.63 E-value=48 Score=24.77 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=48.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYD 130 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~e 130 (241)
+++.=.|......|..+|+..|++|.... ++. ....|++|+|.....
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~v~~y~-~q~---------------------------~~~~DvlItD~~~~~----- 48 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQVQRYE-GQQ---------------------------PDADDVLITDYEPQV----- 48 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEEEEE-S-S-------------------------------TT-EEEEESS-S------
T ss_pred EEEEehhHHHHHHHHHHHHHCCcEEEEec-CCC---------------------------CCCCcEEEECCCccc-----
Confidence 56666788889999999999999998765 222 124799999985422
Q ss_pred HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 131 LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
..+.-..|.++..--. ...+......+.-...+.+|-.++.++
T Consensus 49 --------~~~~~a~I~~s~~hiG----~p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 49 --------AWPGRAVIRFSRRHIG----PPQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp -----------SSEEEEEESS-SS----S--TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred --------CCcceEEEEEchHhCC----CccccCCCcEEeccCCHHHHHHHHHHh
Confidence 1122335666654321 122333444555566777777766654
No 285
>PLN02366 spermidine synthase
Probab=49.61 E-value=1.9e+02 Score=26.28 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=42.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc--Cc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS--SY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~--g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|.+||=|+.+-...++.+... ++ .+. ...|+.+.++.. ....||+||+|.
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---------------------~~~~yDvIi~D~ 173 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---------------------PEGTYDAIIVDS 173 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---------------------cCCCCCEEEEcC
Confidence 357889998888777777777532 11 233 345555554422 245799999998
Q ss_pred CCCCCCH-----HHHHHHHhhc
Q 026247 122 CMPGMTG-----YDLLKRLKVS 138 (241)
Q Consensus 122 ~mp~~~G-----~el~~~lr~~ 138 (241)
.-|.... .++.+.++..
T Consensus 174 ~dp~~~~~~L~t~ef~~~~~~~ 195 (308)
T PLN02366 174 SDPVGPAQELFEKPFFESVARA 195 (308)
T ss_pred CCCCCchhhhhHHHHHHHHHHh
Confidence 7664222 2455555543
No 286
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=49.58 E-value=1.8e+02 Score=25.34 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=42.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
.|+.++--.. +.-|..+++.+- ..+|||+.......+ .+..| .+|+..+-+.+++.+++.+++......
T Consensus 267 adi~v~ps~~-E~~~~~~lEAma----~G~PvI~s~~~~~~~----~i~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~ 335 (358)
T cd03812 267 MDVFLFPSLY-EGLPLVLIEAQA----SGLPCILSDTITKEV----DLTDL-VKFLSLDESPEIWAEEILKLKSEDRRE 335 (358)
T ss_pred cCEEEecccc-cCCCHHHHHHHH----hCCCEEEEcCCchhh----hhccC-ccEEeCCCCHHHHHHHHHHHHhCcchh
Confidence 5666654332 334666666654 478987643333222 23333 367777777899999999998765444
No 287
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=49.55 E-value=53 Score=28.69 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=45.8
Q ss_pred ccEEEEEe-CCHHHHHHHHHHHhhcCcEEE---EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 48 TFHVLAVD-DSLIDRKILENLLRVSSYQVT---CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 48 ~~~VLIVD-Dd~~~~~~l~~~L~~~g~~V~---~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
..+|=.|. .....+..+.+-|.+.||+|. .+++...|..++.. ..-+|-+++-|--|
T Consensus 39 ~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~-------------------~~lrP~l~v~d~a~ 99 (262)
T KOG3040|consen 39 HVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEE-------------------NQLRPYLIVDDDAL 99 (262)
T ss_pred CceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHh-------------------cCCCceEEEcccch
Confidence 33454443 344556667777888999986 58889999998842 34568888888888
Q ss_pred CCCCHHH
Q 026247 124 PGMTGYD 130 (241)
Q Consensus 124 p~~~G~e 130 (241)
++.+|++
T Consensus 100 ~dF~gid 106 (262)
T KOG3040|consen 100 EDFDGID 106 (262)
T ss_pred hhCCCcc
Confidence 8888875
No 288
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=49.04 E-value=63 Score=24.37 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHhhcCcEEEEE
Q 026247 57 SLIDRKILENLLRVSSYQVTCV 78 (241)
Q Consensus 57 d~~~~~~l~~~L~~~g~~V~~~ 78 (241)
+......+...|...||.+...
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~AT 31 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLFAT 31 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEEEC
Confidence 3334444555555678777543
No 289
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.65 E-value=2e+02 Score=25.70 Aligned_cols=93 Identities=13% Similarity=0.233 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hcCc--EE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDDSLIDRKILENLLR----VSSY--QV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~----~~g~--~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.|||=|.|-.....+...++ ..++ .+ +.+.+.++|++.+ +..+|+|++|-
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~----------------------~~GaDiI~LDn- 210 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAM----------------------NAGADIVMCDN- 210 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHH----------------------HcCCCEEEECC-
Confidence 35555555444434444443 3443 22 4688999999987 34589999884
Q ss_pred CCCCCHHHHHHHHhh--cCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 123 MPGMTGYDLLKRLKV--SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 123 mp~~~G~el~~~lr~--~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
|+--++.+.++. ..++.+ .|..|+.-+.+.+.+..+.|+|.+-
T Consensus 211 ---~~~e~l~~~v~~~~~~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 211 ---MSVEEIKEVVAYRNANYPHV-LLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred ---CCHHHHHHHHHHhhccCCCe-EEEEECCCCHHHHHHHHHcCCCEEE
Confidence 343333333331 222333 5667777889999999999998553
No 290
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=48.64 E-value=1.1e+02 Score=25.76 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=43.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE--eCCCChHHHHHHHHHHh
Q 026247 116 LIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL--LKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL--~KP~~~~~L~~~i~~~l 186 (241)
+-++|...--...++.++.++.. .++||++..--.+...+..++++|++..+ ..-+..+.+.+.+....
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~--v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~ 118 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREA--VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELAR 118 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHh--cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHH
Confidence 33444444444566778888753 47899876543455578889999999997 33333456666655543
No 291
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.53 E-value=80 Score=24.51 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=28.9
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 47 ETFHVLAV----DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 47 ~~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
-..|||++ +|+......+..+.-..++.+..+.+.+||-.++
T Consensus 66 ~~lrvLL~~VDv~~~~~~L~eL~k~~~~~~~TLilaws~eEaa~Yl 111 (112)
T TIGR00597 66 FNLRILLVQVDVKNPQQALKELAKMCILNDCTLILAWSFEEAARYL 111 (112)
T ss_pred cceeEEEEEEeCCchHHHHHHHHHHHHHcCcEEEEECCHHHHHHhh
Confidence 45666654 3444444444454446789999999999998876
No 292
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=48.50 E-value=94 Score=30.16 Aligned_cols=58 Identities=17% Similarity=0.328 Sum_probs=40.3
Q ss_pred cCCCccEEEEeCCCCCC-CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 110 EESRVNLIMTDYCMPGM-TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~-~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
.+...|+|.+|..-... .-++.+++||. .+++++|++ -.-.+.+....+.++||+.+.
T Consensus 250 ~~ag~d~i~id~a~G~s~~~~~~i~~ik~-~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 250 IEAGVDVLVVDSSQGNSIYQIDMIKKLKS-NYPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred HHCCCCEEEEecCCCCchHHHHHHHHHHh-hCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 35579999999852221 23688999985 356777665 233457888899999998663
No 293
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=48.01 E-value=1.6e+02 Score=26.39 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=46.4
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
+.+.+.+++.+++ +..+|+|++| +|+.-+=.++++.++. ..+. .+|..|+--+.+
T Consensus 193 VEv~tleea~ea~----------------------~~GaDiI~lD-n~~~e~l~~~v~~l~~-~~~~-~~leasGGI~~~ 247 (277)
T TIGR01334 193 VEADTIEQALTVL----------------------QASPDILQLD-KFTPQQLHHLHERLKF-FDHI-PTLAAAGGINPE 247 (277)
T ss_pred EECCCHHHHHHHH----------------------HcCcCEEEEC-CCCHHHHHHHHHHHhc-cCCC-EEEEEECCCCHH
Confidence 4578999999987 3458999999 3333333334444432 1222 356778888899
Q ss_pred HHHHHHHcCCcce
Q 026247 156 RVTMCLEEGAEEF 168 (241)
Q Consensus 156 ~~~~a~~~Ga~dy 168 (241)
.+......|+|-+
T Consensus 248 ni~~ya~~GvD~i 260 (277)
T TIGR01334 248 NIADYIEAGIDLF 260 (277)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999998754
No 294
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=47.99 E-value=5.8 Score=33.79 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=49.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHH
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDL 178 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L 178 (241)
..+|+++.++.||++.|+.+...+... .....+++++............+..|+.+|+.+|....++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 129 (340)
T KOG1601|consen 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRL 129 (340)
T ss_pred ccccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCcccccccccccCCCc
Confidence 568999999999999999988877632 3345556666666555556677777899999999874333
No 295
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=47.89 E-value=1.3e+02 Score=25.71 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=42.3
Q ss_pred cEEEEeCCCCC-CCH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 115 NLIMTDYCMPG-MTG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 115 DlVllD~~mp~-~~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-+|++|+.--+ +.| +++++++... ..+|+|+=-+-.+.+++.++...|+++.+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~~--~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLEL--SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHhh--CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 68999998754 334 6788888743 468998877778888999999999998875
No 296
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.82 E-value=1.1e+02 Score=27.29 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=44.1
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
..+.+.+++.+.+ ...+|+|.+|-. |.+.++++.....+.+|++ .++--+.+
T Consensus 194 VEv~tleea~eA~----------------------~~gaD~I~LD~~-----~~e~l~~~v~~~~~~i~le-AsGGIt~~ 245 (277)
T PRK05742 194 VEVESLDELRQAL----------------------AAGADIVMLDEL-----SLDDMREAVRLTAGRAKLE-ASGGINES 245 (277)
T ss_pred EEeCCHHHHHHHH----------------------HcCCCEEEECCC-----CHHHHHHHHHHhCCCCcEE-EECCCCHH
Confidence 4578999998886 345899999842 3444444432222466765 44556788
Q ss_pred HHHHHHHcCCcceE
Q 026247 156 RVTMCLEEGAEEFL 169 (241)
Q Consensus 156 ~~~~a~~~Ga~dyL 169 (241)
.+.+....|+|.+-
T Consensus 246 ni~~~a~tGvD~Is 259 (277)
T PRK05742 246 TLRVIAETGVDYIS 259 (277)
T ss_pred HHHHHHHcCCCEEE
Confidence 88889999998653
No 297
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=47.75 E-value=2e+02 Score=26.16 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe-CCCCCC------CHHHHHHHHhh
Q 026247 66 NLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD-YCMPGM------TGYDLLKRLKV 137 (241)
Q Consensus 66 ~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD-~~mp~~------~G~el~~~lr~ 137 (241)
+.++..|..| ..+++.++|...+ +..+|.|++- ..--+. +-+.|+..++.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~----------------------~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~ 187 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAA----------------------KAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRD 187 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHH----------------------HTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhh----------------------hcCCCEEEEeccccCCCCCccccceeeHHHHHhh
Confidence 4566778655 4699999998876 3458888876 322222 23667777764
Q ss_pred cCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 138 SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 138 ~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
. .++|||+--+-.+...+..++..||++...
T Consensus 188 ~--~~iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 188 A--VDIPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp H---SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred h--cCCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 3 359999888888889999999999998764
No 298
>PRK14099 glycogen synthase; Provisional
Probab=47.67 E-value=1.8e+02 Score=27.94 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCC-hHHHHHHH----HcC-CcceEeCCCChHHHHHHHHHH
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENV-PSRVTMCL----EEG-AEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~-~~~~~~a~----~~G-a~dyL~KP~~~~~L~~~i~~~ 185 (241)
.|+.++=- ..+.-|+..++.+. ..+|.|+ |..+. .+.+...- ..| .++|+..|.+.++|...+.++
T Consensus 370 aDifv~PS-~~E~fGl~~lEAma----~G~ppVv-s~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a 441 (485)
T PRK14099 370 ADALLVPS-RFEPCGLTQLCALR----YGAVPVV-ARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKT 441 (485)
T ss_pred CCEEEECC-ccCCCcHHHHHHHH----CCCCcEE-eCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHH
Confidence 57777633 34555777777665 3444444 33322 22222110 012 579999999999999999874
No 299
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=47.62 E-value=2e+02 Score=25.53 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=38.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecC----CChHHHHH-HHHcCCcceEeCCCC--hHHHHHHHHHH
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSE----NVPSRVTM-CLEEGAEEFLLKPVR--LSDLEKLQPRL 185 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~----~~~~~~~~-a~~~Ga~dyL~KP~~--~~~L~~~i~~~ 185 (241)
..|++++.- + +..+++.+. ..+|+|++... .......+ ..+.| .+++..+-+ .+.|.+.+..+
T Consensus 252 ~~d~~i~~~---g--~~~~~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~~l~~~i~~l 321 (357)
T PRK00726 252 AADLVICRA---G--ASTVAELAA----AGLPAILVPLPHAADDHQTANARALVDAG-AALLIPQSDLTPEKLAEKLLEL 321 (357)
T ss_pred hCCEEEECC---C--HHHHHHHHH----hCCCEEEecCCCCCcCcHHHHHHHHHHCC-CEEEEEcccCCHHHHHHHHHHH
Confidence 357777621 1 344445444 46898877431 22222233 34455 477776655 89999999998
Q ss_pred hcC
Q 026247 186 LKS 188 (241)
Q Consensus 186 l~~ 188 (241)
+..
T Consensus 322 l~~ 324 (357)
T PRK00726 322 LSD 324 (357)
T ss_pred HcC
Confidence 854
No 300
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=47.48 E-value=1e+02 Score=27.43 Aligned_cols=70 Identities=20% Similarity=0.177 Sum_probs=46.5
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
..+.+.+++.+.+ ....|.|.+|-.-|. +--++.+.++ ...+.+|+++. +--+.+
T Consensus 188 Vev~t~eea~~A~----------------------~~gaD~I~ld~~~p~-~l~~~~~~~~-~~~~~i~i~As-GGI~~~ 242 (272)
T cd01573 188 VEVDSLEEALAAA----------------------EAGADILQLDKFSPE-ELAELVPKLR-SLAPPVLLAAA-GGINIE 242 (272)
T ss_pred EEcCCHHHHHHHH----------------------HcCCCEEEECCCCHH-HHHHHHHHHh-ccCCCceEEEE-CCCCHH
Confidence 4678899988876 345799999965553 1123444444 22346777654 445788
Q ss_pred HHHHHHHcCCcceEe
Q 026247 156 RVTMCLEEGAEEFLL 170 (241)
Q Consensus 156 ~~~~a~~~Ga~dyL~ 170 (241)
.+.+..+.|++.+..
T Consensus 243 ni~~~~~~Gvd~I~v 257 (272)
T cd01573 243 NAAAYAAAGADILVT 257 (272)
T ss_pred HHHHHHHcCCcEEEE
Confidence 888999999987743
No 301
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=47.46 E-value=94 Score=26.28 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=53.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----cCc-----------EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCc
Q 026247 50 HVLAVDDSLIDRKILENLLRV----SSY-----------QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRV 114 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~----~g~-----------~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (241)
+-.||..=+..+.+..+++.- .|- .|..+.+.++|++.+... ....|
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~------------------~G~~P 105 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEE------------------EGKRP 105 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHH------------------HSS--
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHH------------------hCCCC
Confidence 577888778888877777752 221 367899999999998432 67789
Q ss_pred cEEEEeCC-CCCCCHHHHHHHHhhcCCCCCcEEEE--ecCCChHHHHHHHHcCCcceEeCCCCh
Q 026247 115 NLIMTDYC-MPGMTGYDLLKRLKVSSWKDVPVVVM--SSENVPSRVTMCLEEGAEEFLLKPVRL 175 (241)
Q Consensus 115 DlVllD~~-mp~~~G~el~~~lr~~~~~~~pII~l--sa~~~~~~~~~a~~~Ga~dyL~KP~~~ 175 (241)
-+|-+|.. -|+.-.++-++++-.. .+-|++++ |+++-.+.+. ...||+..|+.-
T Consensus 106 ~~v~TsAr~~~~~is~~~lr~~l~~--~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~g 162 (185)
T PF09936_consen 106 LLVATSARKYPNTISYAELRRMLEE--EDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIRG 162 (185)
T ss_dssp EEEE--SS--SS-B-HHHHHHHHHH----S-EEEEE--TT---HHHH-----TT-SEEB--TTT
T ss_pred EEEEecCcCCCCCcCHHHHHHHHhc--cCCeEEEEecCCCCCCHHHH-----HhcCeeEccccc
Confidence 99999998 4554455544444322 24565555 7776655542 345799998743
No 302
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=47.42 E-value=74 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEE--ecCCChHHHHHHHHcCCcceEeCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVM--SSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~l--sa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
..|++.++.++.. .++.||++. ...........+.++|++..+.-.
T Consensus 38 ~~g~~~i~~i~~~-~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 38 SEGMEAVRALREA-FPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred HhCHHHHHHHHHH-CCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 4567888888743 346777663 222222345677888888666543
No 303
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.29 E-value=1.2e+02 Score=25.33 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=38.2
Q ss_pred CCccEEEEeCCCCC--CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 112 SRVNLIMTDYCMPG--MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 112 ~~~DlVllD~~mp~--~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
..+|.|-+ .|. .-|.+.++.++. ..+.+|++.+-+ -+.+.....+++|++++
T Consensus 124 ~Gadyv~~---Fpt~~~~G~~~l~~~~~-~~~~ipvvaiGG-I~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 124 AGASCVKV---FPVQAVGGADYIKSLQG-PLGHIPLIPTGG-VTLENAQAFIQAGAIAV 177 (187)
T ss_pred CCCCEEEE---CcCCcccCHHHHHHHHh-hCCCCcEEEeCC-CCHHHHHHHHHCCCeEE
Confidence 45677765 444 458999999984 446799876654 56788889999999875
No 304
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.25 E-value=1.9e+02 Score=25.00 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=44.1
Q ss_pred ccEEEEeCCCCC--CCHHH---------------HHHHHhhcCCCCCcEEEEe-----cCCChHHHHHHHHcCCcceEeC
Q 026247 114 VNLIMTDYCMPG--MTGYD---------------LLKRLKVSSWKDVPVVVMS-----SENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 114 ~DlVllD~~mp~--~~G~e---------------l~~~lr~~~~~~~pII~ls-----a~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.|+|=+.+-.|+ .||.. +++.+|. ...+|+++|+ ...-......+.++|+++++.-
T Consensus 31 ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~--~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 31 VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRK--DVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhc--cCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 777666665544 35543 5555552 2578987664 2334455788999999999986
Q ss_pred --CCC-hHHHHHHHHHHh
Q 026247 172 --PVR-LSDLEKLQPRLL 186 (241)
Q Consensus 172 --P~~-~~~L~~~i~~~l 186 (241)
|+. .+++...+..+.
T Consensus 109 dlp~e~~~~~~~~~~~~~ 126 (244)
T PRK13125 109 DLLIDYPDDLEKYVEIIK 126 (244)
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 343 356655555554
No 305
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=47.18 E-value=1.4e+02 Score=28.01 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC----CCCHHHHH
Q 026247 57 SLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP----GMTGYDLL 132 (241)
Q Consensus 57 d~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp----~~~G~el~ 132 (241)
|....+.+...|...||+++. .....|+|++..+-- ....++.+
T Consensus 12 N~~ds~~~~~~l~~~g~~~~~--------------------------------~~~~aD~v~intC~v~~~a~~~~~~~i 59 (429)
T TIGR00089 12 NEADSEIMAGLLKEAGYEVTD--------------------------------DPEEADVIIINTCAVREKAEQKVRSRL 59 (429)
T ss_pred cHHHHHHHHHHHHHCcCEECC--------------------------------CcccCCEEEEecceeechHHHHHHHHH
Confidence 445566677777777886552 233579999974322 23456777
Q ss_pred HHHhhcCCCCCcEEEEecCCChHHHHHHH-HcCCcceEeCCCChHHHHHHHHHHh
Q 026247 133 KRLKVSSWKDVPVVVMSSENVPSRVTMCL-EEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 133 ~~lr~~~~~~~pII~lsa~~~~~~~~~a~-~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
++++... +..+.|++++......-.+++ .....|++.-+-....+.+.+....
T Consensus 60 ~~~~~~~-~~~~~vvvgGc~a~~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~ 113 (429)
T TIGR00089 60 GELAKLK-KKNAKIVVAGCLAQREGEELLKRIPEVDIVLGPQNKERIPEAIESAE 113 (429)
T ss_pred HHHHHhC-cCCCEEEEECcccccCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh
Confidence 7776332 333245666654433334433 3333345666766677777766654
No 306
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=46.73 E-value=2e+02 Score=25.25 Aligned_cols=78 Identities=8% Similarity=-0.020 Sum_probs=45.1
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHhhcCcEEEE---E----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 49 FHVLAVD-DSLI---DRKILENLLRVSSYQVTC---V----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 49 ~~VLIVD-Dd~~---~~~~l~~~L~~~g~~V~~---~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.+|.++. |+.. ....+...++..|++|.. + .+....+..+ ....+|+|
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l---------------------~~~~~d~i 200 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKA---------------------KAAGPDAV 200 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHH---------------------HhcCCCEE
Confidence 3555543 3322 345566777788988753 1 2334444444 45679999
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEec
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~~~~~pII~lsa 150 (241)
++.. .+.+...+++.++... ...+++..+.
T Consensus 201 ~~~~--~~~~~~~~~~~~~~~g-~~~~~~~~~~ 230 (345)
T cd06338 201 VVAG--HFPDAVLLVRQMKELG-YNPKALYMTV 230 (345)
T ss_pred EECC--cchhHHHHHHHHHHcC-CCCCEEEEec
Confidence 9754 3346677788887543 3456655544
No 307
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=46.42 E-value=1.6e+02 Score=27.18 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHhhcCcEEEEEC---------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCc
Q 026247 49 FHVLAVDDSLID-----RKILENLLRVSSYQVTCVD---------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRV 114 (241)
Q Consensus 49 ~~VLIVDDd~~~-----~~~l~~~L~~~g~~V~~~~---------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (241)
.|+|||-|.... ...+.+.|+..|+++..+. +..++++.+ ....+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~---------------------~~~~~ 87 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELC---------------------KEEKV 87 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH---------------------HHcCC
Confidence 489988776443 3567788888888776543 234455555 45678
Q ss_pred cEEEEeCCCCCCCHHHHHHHH
Q 026247 115 NLIMTDYCMPGMTGYDLLKRL 135 (241)
Q Consensus 115 DlVllD~~mp~~~G~el~~~l 135 (241)
|+||- +.|.+-+++.|-+
T Consensus 88 D~IIa---iGGGS~iD~aK~i 105 (382)
T cd08187 88 DFILA---VGGGSVIDSAKAI 105 (382)
T ss_pred CEEEE---eCChHHHHHHHHH
Confidence 99874 4566667766655
No 308
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=46.40 E-value=1.6e+02 Score=26.29 Aligned_cols=85 Identities=15% Similarity=0.315 Sum_probs=52.9
Q ss_pred ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC--------CCCCCCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 78 VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY--------CMPGMTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 78 ~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~--------~mp~~~G~el~~~lr~~~~~~~pII~ls 149 (241)
+++.++|.+.+ ....+|.+-+.+ .-|.. +++.++.|+.. -++|+++.-
T Consensus 152 ~t~~eea~~f~---------------------~~tgvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~--~~iPlv~hG 207 (282)
T TIGR01859 152 LADPDEAEQFV---------------------KETGVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKEL--TNIPLVLHG 207 (282)
T ss_pred cCCHHHHHHHH---------------------HHHCcCEEeeccCccccccCCCCcc-CHHHHHHHHHH--hCCCEEEEC
Confidence 44778887776 334577766442 11333 58889999854 368998885
Q ss_pred c-CCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 150 S-ENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 150 a-~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+ .-..+...++++.|++.+=.--.-.......++..+
T Consensus 208 gSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 208 ASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVL 245 (282)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHH
Confidence 3 345677888999999977443222233344445544
No 309
>PRK07695 transcriptional regulator TenI; Provisional
Probab=46.40 E-value=1.7e+02 Score=24.25 Aligned_cols=55 Identities=15% Similarity=0.337 Sum_probs=38.8
Q ss_pred CCCccEEEEeCCCCC-------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 111 ESRVNLIMTDYCMPG-------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 111 ~~~~DlVllD~~mp~-------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
+...|.|++..-.|. ..|++.+++++.. ..+||+++-+- +.+....++..|++++
T Consensus 113 ~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~--~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 113 KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA--LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 345788876643322 2367888888743 35899877665 7888999999999877
No 310
>PLN02476 O-methyltransferase
Probab=46.38 E-value=2.2e+02 Score=25.53 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=42.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.-+|.=+|-++......+..++..|+. +. ..+++.+.+..+.. +.....||+|++|..
T Consensus 143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~-----------------~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 143 SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ-----------------NGEGSSYDFAFVDAD 203 (278)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-----------------cccCCCCCEEEECCC
Confidence 346999999999999999999999874 44 35777777655410 001357999999975
No 311
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=46.22 E-value=26 Score=29.19 Aligned_cols=30 Identities=20% Similarity=0.047 Sum_probs=26.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
||+||..-.+-..+.++|+..|+.+..+..
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~ 31 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRN 31 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEEC
Confidence 899999999999999999999998876653
No 312
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=46.05 E-value=40 Score=30.92 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcc------eEeC-CCChHHHHHHHHHHhc
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE------FLLK-PVRLSDLEKLQPRLLK 187 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~d------yL~K-P~~~~~L~~~i~~~l~ 187 (241)
+.++.++......+|||...+-.+.+++.+.+.+||+. ++.+ |.-..++.+-+.+++.
T Consensus 277 ~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 277 EVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 35666664333369999999999999999999999984 4555 7777777777777764
No 313
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.87 E-value=1.4e+02 Score=23.07 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=45.6
Q ss_pred ccEEEEeCCC-CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC-CChHHHHHHH
Q 026247 114 VNLIMTDYCM-PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP-VRLSDLEKLQ 182 (241)
Q Consensus 114 ~DlVllD~~m-p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP-~~~~~L~~~i 182 (241)
.++|-++.-- -+.-|+..++.||+.. ...--|--+++.-.+...-....|++.|..+. .+.+.....+
T Consensus 20 l~lI~i~FP~F~DGRgfS~ArlLR~r~-gy~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l 89 (110)
T PF06073_consen 20 LPLIAIDFPKFTDGRGFSQARLLRERY-GYTGELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAAL 89 (110)
T ss_pred CCEEEEECCCcCCchHhHHHHHHHHHc-CCCCcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH
Confidence 4555555421 2467899999999542 12233556777888888899999999998885 5555544433
No 314
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=45.76 E-value=59 Score=33.73 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=48.6
Q ss_pred CCCccEEEEe-CCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 111 ESRVNLIMTD-YCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 111 ~~~~DlVllD-~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
...|.++|+| .+|-...++..+.++-+.....+-+|++|.+ .+.+...+..-+.-|-.++++.++|...+.+++..
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~--~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE--PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC--hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 3567888888 4554445555433333233345566666643 33355666666777888899999999888887754
No 315
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=45.48 E-value=47 Score=27.15 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=25.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
|||+|.....-..+.++|++.|+++......
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 31 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRND 31 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCC
Confidence 6899988888888999999999988765543
No 316
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=45.20 E-value=2.8e+02 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.0
Q ss_pred CCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 141 KDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 141 ~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
..+|||+=-+.....++.+|+.+||+....=
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3588887667778999999999999977553
No 317
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=44.95 E-value=2.5e+02 Score=25.85 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCCcEEEEec----CCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 141 KDVPVVVMSS----ENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 141 ~~~pII~lsa----~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.++-+|.+.+ ....+....|+++|..=++-||+..++..+++..+.+
T Consensus 63 ~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 63 IDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 4555555522 3457888899999999999999998777776666554
No 318
>PRK13561 putative diguanylate cyclase; Provisional
Probab=44.94 E-value=1.9e+02 Score=28.52 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=64.1
Q ss_pred HHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC----CCCCCHHHHHHHH
Q 026247 62 KILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC----MPGMTGYDLLKRL 135 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~----mp~~~G~el~~~l 135 (241)
..+...|+..|+.+. .+++|-..+.+|..+ ..-++|.|=+|-. ++. + -.+++.+
T Consensus 537 ~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l------------------~~l~~d~lKiD~s~i~~i~~-~-~~~v~~i 596 (651)
T PRK13561 537 VAILRPLRNAGVRVALDDFGMGYAGLRQLQHM------------------KSLPIDVLKIDKMFVDGLPE-D-DSMVAAI 596 (651)
T ss_pred HHHHHHHHHCCCEEEEECCCCCcccHHHHhhc------------------CCCCCcEEEECHHHHhcCCC-C-HHHHHHH
Confidence 344566777898765 477777777777311 2357899999843 332 2 2445554
Q ss_pred hhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHH
Q 026247 136 KVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKL 181 (241)
Q Consensus 136 r~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~ 181 (241)
-.. ..-++.+ +..+-.+.+....+.+.|++ .|+.||...+++...
T Consensus 597 ~~~a~~l~i~v-iAegVE~~~~~~~l~~~g~d~~QG~~~~~P~~~~~~~~~ 646 (651)
T PRK13561 597 IMLAQSLNLQV-IAEGVETEAQRDWLLKAGVGIAQGFLFARALPIEIFEER 646 (651)
T ss_pred HHHHHHCCCcE-EEecCCCHHHHHHHHhcCCCEEeCCcccCCCCHHHHHHH
Confidence 322 1234544 45677778888889999997 358899999887653
No 319
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=44.61 E-value=58 Score=26.21 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=27.6
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHhhc-CcEEEEECCHHHHHHHH
Q 026247 46 QETFHVLAVDDSLID---------RKILENLLRVS-SYQVTCVDSGDKALEYL 88 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~---------~~~l~~~L~~~-g~~V~~~~~~~eal~~l 88 (241)
..++.|.|||.|... ...+.+.|... .+.+.. .+.++|.+.+
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l 92 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGL 92 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHh
Confidence 346789999877754 34444555433 355543 3889999988
No 320
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=44.61 E-value=64 Score=28.14 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=44.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-------cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS-------YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g-------~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+|-+||=|+.+.+..++.|.... +++ ...||..-++.. .+..||+||+|
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~---------------------~~~~yDvIi~D 157 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKET---------------------QEEKYDVIIVD 157 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTS---------------------SST-EEEEEEE
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhc---------------------cCCcccEEEEe
Confidence 3579999999999999988886421 233 466766665543 22289999999
Q ss_pred CCCCCCCH-----HHHHHHHhh
Q 026247 121 YCMPGMTG-----YDLLKRLKV 137 (241)
Q Consensus 121 ~~mp~~~G-----~el~~~lr~ 137 (241)
..-|...+ .++.+.++.
T Consensus 158 ~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 158 LTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SSSTTSCGGGGSSHHHHHHHHH
T ss_pred CCCCCCCcccccCHHHHHHHHh
Confidence 98876444 355555543
No 321
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=44.25 E-value=59 Score=27.34 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=43.0
Q ss_pred EEEEEeCC---------HHHHHHHHHHHh-hcCcEEEEECCHHHHH-HHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 50 HVLAVDDS---------LIDRKILENLLR-VSSYQVTCVDSGDKAL-EYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 50 ~VLIVDDd---------~~~~~~l~~~L~-~~g~~V~~~~~~~eal-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
||||+... +.....+..+|+ ..||+|+...+....- +.| ..+|+||
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L-----------------------~~~Dvvv 57 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL-----------------------KGYDVVV 57 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH-----------------------CT-SEEE
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh-----------------------cCCCEEE
Confidence 57777655 256778899998 7889999877633321 123 4699999
Q ss_pred EeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 119 TDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 119 lD~~mp~-~~G~el~~~lr~~~~~~~pII~ls 149 (241)
+.....+ ++. +..+.|+.--....++|.+=
T Consensus 58 ~~~~~~~~l~~-~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 58 FYNTGGDELTD-EQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp EE-SSCCGS-H-HHHHHHHHHHHTT-EEEEEG
T ss_pred EECCCCCcCCH-HHHHHHHHHHHcCCCEEEEc
Confidence 9888753 332 22223322111356777773
No 322
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=44.19 E-value=1.6e+02 Score=27.12 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=41.8
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhcCcEEEEEC---------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCc
Q 026247 49 FHVLAVDDSLI-----DRKILENLLRVSSYQVTCVD---------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRV 114 (241)
Q Consensus 49 ~~VLIVDDd~~-----~~~~l~~~L~~~g~~V~~~~---------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (241)
.|+|||-|... ....+.+.|+..|.++..+. +..++.+.+ ....+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~---------------------~~~~~ 84 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALA---------------------REEGC 84 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH---------------------HHcCC
Confidence 48899988654 33557777877787766543 334455554 45679
Q ss_pred cEEEEeCCCCCCCHHHHHHHHh
Q 026247 115 NLIMTDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 115 DlVllD~~mp~~~G~el~~~lr 136 (241)
|+||- ..|.+-++..|.+.
T Consensus 85 D~Iia---vGGGS~iD~aK~ia 103 (380)
T cd08185 85 DFVVG---LGGGSSMDTAKAIA 103 (380)
T ss_pred CEEEE---eCCccHHHHHHHHH
Confidence 99874 45777777777653
No 323
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=44.03 E-value=1.8e+02 Score=23.89 Aligned_cols=87 Identities=7% Similarity=0.022 Sum_probs=50.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc-EEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY-QVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+|..||-++.....++..++..|+ .+.. ..+..+. . ....||+|+++. +..
T Consensus 66 ~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~---~---------------------~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 66 ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF---Q---------------------HEEQFDVITSRA-LAS 120 (181)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc---c---------------------ccCCccEEEehh-hhC
Confidence 45799999999988888888877765 3443 3444331 1 245799999986 433
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHH
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCL 161 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~ 161 (241)
. .++.+.+...-.++-.+++.-............
T Consensus 121 ~--~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~ 154 (181)
T TIGR00138 121 L--NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAK 154 (181)
T ss_pred H--HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHH
Confidence 2 234444432222444555554444444444443
No 324
>PRK13695 putative NTPase; Provisional
Probab=44.02 E-value=1.2e+02 Score=24.29 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCccEEEEeC--CCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcc--eEeCCCChHHHHHHHHHHh
Q 026247 112 SRVNLIMTDY--CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE--FLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 112 ~~~DlVllD~--~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~d--yL~KP~~~~~L~~~i~~~l 186 (241)
..++++|+|- .+...+ ..+.+.+........|+|+++..........-+..-.+. |-..|-+.+++...+...+
T Consensus 95 ~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 95 EEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 4689999996 332222 223333432222456787776653322222223333333 4445777777776665544
No 325
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=43.83 E-value=3e+02 Score=26.34 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=17.3
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHhhcCcEEEE
Q 026247 48 TFHVLAVDDSLID---RKILENLLRVSSYQVTC 77 (241)
Q Consensus 48 ~~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~ 77 (241)
+.+|++|+-|... ...+..+....|..+..
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~ 155 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG 155 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 5688888877542 23344445555655544
No 326
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.69 E-value=2.5e+02 Score=26.47 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=40.9
Q ss_pred CccEEEEeCCCCCCCH----HHHH---HHHhhcCCCCCcEEEEecCCChHHHHHHH-HcCCcceEeCCCChHHHHHHHHH
Q 026247 113 RVNLIMTDYCMPGMTG----YDLL---KRLKVSSWKDVPVVVMSSENVPSRVTMCL-EEGAEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G----~el~---~~lr~~~~~~~pII~lsa~~~~~~~~~a~-~~Ga~dyL~KP~~~~~L~~~i~~ 184 (241)
..|+|+++.+-..... ...+ +++| ...|+++|| +++......-.+.+ .....||+.-+-....+...+..
T Consensus 37 ~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k-~~~p~~~iv-v~Gc~a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~ 114 (437)
T PRK14331 37 EADLILVNTCTIREKPDQKVLSHLGEYKKIK-EKNPNALIG-VCGCLAQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQ 114 (437)
T ss_pred cCCEEEEeCcceecHHHHHHHHHHHHHHHHH-HhCCCCEEE-EEcchhcCChHHHHhcCCCCcEEECCCCHHHHHHHHHH
Confidence 4799999987765333 3333 3444 234566555 44432221121222 33344788888888888777776
Q ss_pred Hhc
Q 026247 185 LLK 187 (241)
Q Consensus 185 ~l~ 187 (241)
...
T Consensus 115 ~~~ 117 (437)
T PRK14331 115 AKA 117 (437)
T ss_pred Hhc
Confidence 653
No 327
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=43.65 E-value=2.3e+02 Score=25.06 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce------EeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF------LLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy------L~KP~~~~~L~~~i~~~l~~~ 189 (241)
++.++.++.. .++|||....-.+.+.+.+++.+||+.. +..|.-...+.+-+.+++...
T Consensus 223 l~~v~~i~~~--~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 223 LRMVYQVYQA--VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred HHHHHHHHHh--CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 5677777743 3689999998889999999999998743 445766777777777777543
No 328
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=43.59 E-value=1.6e+02 Score=23.04 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=46.7
Q ss_pred EEEEeCCHHHH--HHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 51 VLAVDDSLIDR--KILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 51 VLIVDDd~~~~--~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
|+++-|.-... ..+.+.+-..-..-....+...++..+..+. .....+|+|++-+.--+..-
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~----------------~~~~~~d~vvi~lGtNd~~~ 65 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLK----------------DSGKLRKTVVIGLGTNGPFT 65 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHH----------------HcCCCCCeEEEEecCCCCCC
Confidence 66777766655 3444444322122223456677777763221 12346899998876666544
Q ss_pred HHHHHHHhhcCCCCCcEEEEecC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~ 151 (241)
.+=++.|.....+..+|++++.+
T Consensus 66 ~~nl~~ii~~~~~~~~ivlv~~~ 88 (150)
T cd01840 66 KDQLDELLDALGPDRQVYLVNPH 88 (150)
T ss_pred HHHHHHHHHHcCCCCEEEEEECC
Confidence 44444444333345788887765
No 329
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=43.47 E-value=1.7e+02 Score=25.08 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=50.3
Q ss_pred EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-------CCCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 77 CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-------GMTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 77 ~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-------~~~G~el~~~lr~~~~~~~pII~ls 149 (241)
++.+.+++.+.. ...+|.|.+---.| ...|++.+++++.. ..+|+|++-
T Consensus 110 S~h~~eea~~A~----------------------~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~--~~iP~vAIG 165 (211)
T COG0352 110 STHDLEEALEAE----------------------ELGADYVGLGPIFPTSTKPDAPPLGLEGLREIREL--VNIPVVAIG 165 (211)
T ss_pred ecCCHHHHHHHH----------------------hcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHh--CCCCEEEEc
Confidence 466888887764 23388888876444 46799999998854 348999887
Q ss_pred cCCChHHHHHHHHcCCcce
Q 026247 150 SENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 150 a~~~~~~~~~a~~~Ga~dy 168 (241)
+ -+.+.+...++.|+++.
T Consensus 166 G-i~~~nv~~v~~~Ga~gV 183 (211)
T COG0352 166 G-INLENVPEVLEAGADGV 183 (211)
T ss_pred C-CCHHHHHHHHHhCCCeE
Confidence 6 45888889999999976
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=43.46 E-value=82 Score=27.96 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=34.9
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
+.+|.+|+-|... ...+..+-...|+.+..+.+..+..+.+. .-..+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~--------------------~~~~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD--------------------RLRDKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH--------------------HccCCCEEEEeC
Confidence 4689999877632 33444444556666766777766666653 223589999995
No 331
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=43.08 E-value=1.4e+02 Score=27.50 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=27.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEE
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTC 77 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~ 77 (241)
..-.||||.....+....++.|++.|+.|.-
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~R 105 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKR 105 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEE
Confidence 3447999999999999999999999998864
No 332
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=42.97 E-value=2.1e+02 Score=24.27 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=36.4
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHH
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKL 181 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~ 181 (241)
++.+.+-.-++.+.++.++.. ++.--+|-.-.--..+....++++|++ |+.-|....++.+.
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~-~~~~~~iGaGTV~~~~~~~~a~~aGA~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKA-LGDRALIGAGTVLSPEQVDRLADAGGR-LIVTPNTDPEVIRR 99 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHH-cCCCcEEeEEecCCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 444445555677788888743 232112222333456778888889985 66667666665544
No 333
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=42.96 E-value=2.3e+02 Score=24.83 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
-.+.++++|.. .+.||++=-+-.+.+.+.++.+.|||+++.-.
T Consensus 186 ~~~~i~~lr~~--~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAY--SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhh--cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 35667777743 35686653444458899999999999998853
No 334
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=42.93 E-value=2.2e+02 Score=24.93 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=36.2
Q ss_pred HHHHhhcCcEEEEECC-------HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhh
Q 026247 65 ENLLRVSSYQVTCVDS-------GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKV 137 (241)
Q Consensus 65 ~~~L~~~g~~V~~~~~-------~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~ 137 (241)
.+.++..||.|....+ ..+.++.+ ....||+|++|.- ..+. +..+.+|.
T Consensus 46 ~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l---------------------~~~~~d~vV~D~y--~~~~-~~~~~~k~ 101 (279)
T TIGR03590 46 IDLLLSAGFPVYELPDESSRYDDALELINLL---------------------EEEKFDILIVDHY--GLDA-DWEKLIKE 101 (279)
T ss_pred HHHHHHcCCeEEEecCCCchhhhHHHHHHHH---------------------HhcCCCEEEEcCC--CCCH-HHHHHHHH
Confidence 4566778998876543 33455555 4557999999974 3232 23455553
Q ss_pred cCCCCCcEEEEecC
Q 026247 138 SSWKDVPVVVMSSE 151 (241)
Q Consensus 138 ~~~~~~pII~lsa~ 151 (241)
...+++++...
T Consensus 102 ---~~~~l~~iDD~ 112 (279)
T TIGR03590 102 ---FGRKILVIDDL 112 (279)
T ss_pred ---hCCeEEEEecC
Confidence 23456666654
No 335
>PRK00654 glgA glycogen synthase; Provisional
Probab=42.74 E-value=2.9e+02 Score=26.03 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=41.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC------CcceEeCCCChHHHHHHHHHHh
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG------AEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G------a~dyL~KP~~~~~L~~~i~~~l 186 (241)
..|+.++-- .-+.-|+..++.+. ..+|+|+. ..+...+ .+..| .++|+..|.+.++|...+.+++
T Consensus 356 ~aDv~v~PS-~~E~~gl~~lEAma----~G~p~V~~-~~gG~~e---~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 356 GADMFLMPS-RFEPCGLTQLYALR----YGTLPIVR-RTGGLAD---TVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred hCCEEEeCC-CCCCchHHHHHHHH----CCCCEEEe-CCCCccc---eeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 357777642 23455666666655 35666653 3222111 22334 7899999999999999998877
Q ss_pred c
Q 026247 187 K 187 (241)
Q Consensus 187 ~ 187 (241)
.
T Consensus 427 ~ 427 (466)
T PRK00654 427 E 427 (466)
T ss_pred H
Confidence 4
No 336
>PLN02939 transferase, transferring glycosyl groups
Probab=42.69 E-value=2.5e+02 Score=29.87 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=43.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHH-----HHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMC-----LEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a-----~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..|++++=- .-+.-|+-.+..++ ..+|+|+...-+-.+.+... ...|.++|+..|.+.+.|...+.+++.
T Consensus 856 aADIFLmPS-r~EPfGLvqLEAMA----yGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 856 ASDMFIIPS-MFEPCGLTQMIAMR----YGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred hCCEEEECC-CccCCcHHHHHHHH----CCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHH
Confidence 357877743 23555777777666 34566544332323333211 123789999999999999998888764
No 337
>PRK04457 spermidine synthase; Provisional
Probab=42.49 E-value=2.3e+02 Score=24.75 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=45.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcC--cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSS--YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g--~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
...+|..||=++......++.+...+ -.+. ..+|+.+.+... ...||+|++|.--
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~----------------------~~~yD~I~~D~~~ 146 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH----------------------RHSTDVILVDGFD 146 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC----------------------CCCCCEEEEeCCC
Confidence 45689999999999999988876432 2343 356776665432 3579999999632
Q ss_pred CC-----CCHHHHHHHHhhc
Q 026247 124 PG-----MTGYDLLKRLKVS 138 (241)
Q Consensus 124 p~-----~~G~el~~~lr~~ 138 (241)
.. ..-.++++.++..
T Consensus 147 ~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCCCccccCcHHHHHHHHHh
Confidence 11 1124666666543
No 338
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=42.35 E-value=1e+02 Score=25.12 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=51.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc--CcEEEEEC-------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVS--SYQVTCVD-------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~--g~~V~~~~-------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.+.+|.++-..+.....+.+.|+.. |..+.... ...+.++.+ ....||+|
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I---------------------~~~~pdiv 103 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERI---------------------NASGADIL 103 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHH---------------------HHcCCCEE
Confidence 3679999999999998888888754 45554321 122235555 67789999
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~~~~~pII~ls 149 (241)
++-+.+|...- ++.+.+... ..++++-.
T Consensus 104 ~vglG~PkQE~--~~~~~~~~l--~~~v~~~v 131 (171)
T cd06533 104 FVGLGAPKQEL--WIARHKDRL--PVPVAIGV 131 (171)
T ss_pred EEECCCCHHHH--HHHHHHHHC--CCCEEEEe
Confidence 99999998663 345555322 34555443
No 339
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=42.34 E-value=2.4e+02 Score=24.74 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|..+++.+. ..+|||+- .... ..+.+..|-.+++..|-+.+++.+.+.+++..
T Consensus 284 ~~~~~EA~a----~G~PvI~s-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 284 PVVLLEAQA----SGVPVVAT-RHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred chHHHHHHH----cCCCEEEe-CCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 566666654 46888753 3322 23345667788999999999999999998753
No 340
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=42.33 E-value=3.8e+02 Score=27.40 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=62.2
Q ss_pred HHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-CCCCC-HHHHHHHHhh
Q 026247 61 RKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC-MPGMT-GYDLLKRLKV 137 (241)
Q Consensus 61 ~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~-mp~~~-G~el~~~lr~ 137 (241)
...+.+.-.+.|.++. .+.+.+|+-..+ +...++|=++-+ +-... .++...+|..
T Consensus 149 l~~l~~~a~~lGme~LvEvh~~~el~~a~----------------------~~ga~iiGINnRdL~tf~vd~~~t~~L~~ 206 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVETHTREEIERAI----------------------AAGAKVIGINARNLKDLKVDVNKYNELAA 206 (695)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHH----------------------hCCCCEEEEeCCCCccceeCHHHHHHHHh
Confidence 3344444556898864 699999998776 234566644433 22211 2445555653
Q ss_pred cCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC--CCChHHHHHHHHHHhc
Q 026247 138 SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK--PVRLSDLEKLQPRLLK 187 (241)
Q Consensus 138 ~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K--P~~~~~L~~~i~~~l~ 187 (241)
.-..++.+|.-|+-...+++.++.+.|+|++|+= =...++....++.++.
T Consensus 207 ~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~ 258 (695)
T PRK13802 207 DLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVK 258 (695)
T ss_pred hCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHh
Confidence 2223344455567778899999999999999874 2223334445555553
No 341
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=42.26 E-value=52 Score=30.13 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=67.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++++|+|...--++...|.+-|...|+.|...++........ .+.......++++..|+..|-
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n----------------~~~~~~~~~fel~~hdv~~pl 88 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKEN----------------LEHWIGHPNFELIRHDVVEPL 88 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhh----------------cchhccCcceeEEEeechhHH
Confidence 4468999999999999999999998999988766544432221 111125678999999999997
Q ss_pred CCHHHHHHHHhhcC----C--CCCcEEEEecCCChHHHHHHHHcCCc
Q 026247 126 MTGYDLLKRLKVSS----W--KDVPVVVMSSENVPSRVTMCLEEGAE 166 (241)
Q Consensus 126 ~~G~el~~~lr~~~----~--~~~pII~lsa~~~~~~~~~a~~~Ga~ 166 (241)
.-+.+.+-.|-... + ..+..|..-.-+.......|.+.|+-
T Consensus 89 ~~evD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~aR 135 (350)
T KOG1429|consen 89 LKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 135 (350)
T ss_pred HHHhhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCce
Confidence 77777666554311 1 11223333222334455566666653
No 342
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=42.24 E-value=1.8e+02 Score=27.12 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=53.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE-EEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ-VTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
-+|+.+|-++.....++.-++..+.. +.. ..++...+.. ....||+|.+|- ++.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----------------------~~~~fDvIdlDP--fGs 125 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----------------------RNRKFHVIDIDP--FGT 125 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----------------------hCCCCCEEEeCC--CCC
Confidence 47999999999999998888766643 332 3344434332 134699999996 443
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChH----HHHHHH-HcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPS----RVTMCL-EEGA 165 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~----~~~~a~-~~Ga 165 (241)
. ..++...-.. ...--++.+|+.+... ....|+ +.|+
T Consensus 126 ~-~~fld~al~~-~~~~glL~vTaTD~~~L~G~~~~~~~rkYga 167 (374)
T TIGR00308 126 P-APFVDSAIQA-SAERGLLLVTATDTSALCGNYPKSCLRKYGA 167 (374)
T ss_pred c-HHHHHHHHHh-cccCCEEEEEecccHHhcCCChHHHHHHhCC
Confidence 2 2444443211 1233577788665443 234444 4465
No 343
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=42.18 E-value=2.8e+02 Score=25.50 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=61.2
Q ss_pred EEEEEeC----CHHHHHHHHHHHhhcC-cEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDD----SLIDRKILENLLRVSS-YQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDD----d~~~~~~l~~~L~~~g-~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.++.+|- .....+.++.+=+.++ ..|. .+.+.++|..++ +.-+|+|.+-+.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~----------------------~aGad~i~vg~~ 170 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELE----------------------NAGADATKVGIG 170 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHH----------------------HcCcCEEEECCC
Confidence 5777763 2333334444333443 3333 377888887775 345777664311
Q ss_pred ----------CC-CCC--HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 123 ----------MP-GMT--GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 123 ----------mp-~~~--G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.. +.. ++..+..++.. ..+|||+-.+-....++.+|+..||+.+..=
T Consensus 171 ~G~~~~t~~~~g~~~~~w~l~ai~~~~~~--~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 171 PGKVCITKIKTGFGTGGWQLAALRWCAKA--ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred CCcccccccccCCCCCccHHHHHHHHHHH--cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 10 112 45567777643 3589999888889999999999999977543
No 344
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.09 E-value=1.6e+02 Score=26.39 Aligned_cols=92 Identities=10% Similarity=0.060 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcCc--EE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDDSLIDRKILENLL----RVSSY--QV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L----~~~g~--~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.|||=|.|-...-.+...+ +..|. .+ ..+.+.+++.+.. ...+|.|.+|-
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~----------------------~~gaDyI~lD~- 216 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAV----------------------AAGADIIMFDN- 216 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH----------------------HcCCCEEEECC-
Confidence 5777777655443333333 23342 22 4688999988876 35689999973
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
-|.+.++++.......+|+ ..++--..+.+....+.|++.+-
T Consensus 217 ----~~~e~l~~~~~~~~~~i~i-~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 217 ----RTPDEIREFVKLVPSAIVT-EASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred ----CCHHHHHHHHHhcCCCceE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 3556666666432223443 34455678888899999998664
No 345
>PLN02949 transferase, transferring glycosyl groups
Probab=41.75 E-value=2.6e+02 Score=26.68 Aligned_cols=111 Identities=9% Similarity=0.059 Sum_probs=62.7
Q ss_pred CccEEEEEeCC-----HHHHHHHHHHHhhcCc--EEEEECC--HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 47 ETFHVLAVDDS-----LIDRKILENLLRVSSY--QVTCVDS--GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 47 ~~~~VLIVDDd-----~~~~~~l~~~L~~~g~--~V~~~~~--~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
..++++|+.+- ......++++.+..|. .|...++ .++-.++++ ..++.
T Consensus 302 ~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~-----------------------~a~~~ 358 (463)
T PLN02949 302 PRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLG-----------------------GAVAG 358 (463)
T ss_pred CCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHH-----------------------hCcEE
Confidence 35677777652 2233456666665553 3555443 345555551 23555
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+. ....+.-|+-+++.+- ..+|+|+..+-+...++..-...|..+|+.. +.+++.+.+.+++.
T Consensus 359 v~-~s~~E~FGivvlEAMA----~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~ 421 (463)
T PLN02949 359 LH-SMIDEHFGISVVEYMA----AGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLR 421 (463)
T ss_pred Ee-CCccCCCChHHHHHHH----cCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHh
Confidence 53 3345666887877765 4677776643332222211112366788874 78999999999885
No 346
>PRK03612 spermidine synthase; Provisional
Probab=41.59 E-value=2e+02 Score=28.03 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHHHHHHH--HHhhc---C---cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 49 FHVLAVDDSLIDRKILEN--LLRVS---S---YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~--~L~~~---g---~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
-+|.+||=|+.+.+..++ .+... . -.+. ...|+.+.++. ....||+|++
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----------------------~~~~fDvIi~ 379 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----------------------LAEKFDVIIV 379 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----------------------CCCCCCEEEE
Confidence 589999998888888777 33221 1 1233 34555544432 2357999999
Q ss_pred eCCCCCCCH------HHHHHHHhhc
Q 026247 120 DYCMPGMTG------YDLLKRLKVS 138 (241)
Q Consensus 120 D~~mp~~~G------~el~~~lr~~ 138 (241)
|...|...+ -++.+.++..
T Consensus 380 D~~~~~~~~~~~L~t~ef~~~~~~~ 404 (521)
T PRK03612 380 DLPDPSNPALGKLYSVEFYRLLKRR 404 (521)
T ss_pred eCCCCCCcchhccchHHHHHHHHHh
Confidence 976664322 2455555543
No 347
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=41.49 E-value=1.6e+02 Score=25.85 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
.|||-..-.-+...+.+.|...|-+|..++.-++.++... .....+.-+.+|+ .+.++.
T Consensus 7 TiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~-------------------~~~p~~~t~v~Dv--~d~~~~ 65 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAK-------------------AENPEIHTEVCDV--ADRDSR 65 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHH-------------------hcCcchheeeecc--cchhhH
Confidence 6888888888888888888889999999998888888762 1223344556665 455554
Q ss_pred -HHHHHHhhcCCCCCcEEEEec
Q 026247 130 -DLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 130 -el~~~lr~~~~~~~pII~lsa 150 (241)
++..|++ ..+|.+-|++=-+
T Consensus 66 ~~lvewLk-k~~P~lNvliNNA 86 (245)
T COG3967 66 RELVEWLK-KEYPNLNVLINNA 86 (245)
T ss_pred HHHHHHHH-hhCCchheeeecc
Confidence 5888888 4567877776544
No 348
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=41.40 E-value=43 Score=32.86 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=27.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
.+|||||....+-..+.+.|+..|+.+.++.+
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~ 33 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRN 33 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEEC
Confidence 48999999999999999999999988776654
No 349
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=41.36 E-value=98 Score=25.53 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
-.++++.+|... +..+-|.+=. .+.+...+++++|++....-.++++++..++..+-
T Consensus 66 i~~av~~~~~~~-~~~~~I~VEv-~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 66 IEEAVKAARQAA-PEKKKIEVEV-ENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp HHHHHHHHHHHS-TTTSEEEEEE-SSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCceEEEEc-CCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 456778887544 4444233433 34778889999999999999999999999988764
No 350
>PLN02823 spermine synthase
Probab=41.26 E-value=1.9e+02 Score=26.63 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=37.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-----cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS-----YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g-----~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|.+||=|+.+-+..++.+...+ -.+. ..+|+...++. ....||+||+|.
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----------------------~~~~yDvIi~D~ 184 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----------------------RDEKFDVIIGDL 184 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------------------CCCCccEEEecC
Confidence 3479999999999999888875321 1232 34555554432 345799999997
Q ss_pred CCC
Q 026247 122 CMP 124 (241)
Q Consensus 122 ~mp 124 (241)
.-|
T Consensus 185 ~dp 187 (336)
T PLN02823 185 ADP 187 (336)
T ss_pred CCc
Confidence 554
No 351
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=41.08 E-value=2.4e+02 Score=24.87 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=55.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC--CC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG--MT 127 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~--~~ 127 (241)
-++-+--.......+...|...|..+....+....+..+ ..-.++-|++=+...| .+
T Consensus 134 ~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~---------------------~~~~~~Dv~i~iS~sG~t~e 192 (281)
T COG1737 134 YFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQL---------------------ALLTPGDVVIAISFSGYTRE 192 (281)
T ss_pred EEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHH---------------------HhCCCCCEEEEEeCCCCcHH
Confidence 344456777788889999999999999888877776544 2333443333344443 33
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHH
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVT 158 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~ 158 (241)
-+++++..|. .+++||.+|.........
T Consensus 193 ~i~~a~~ak~---~ga~vIaiT~~~~spla~ 220 (281)
T COG1737 193 IVEAAELAKE---RGAKVIAITDSADSPLAK 220 (281)
T ss_pred HHHHHHHHHH---CCCcEEEEcCCCCCchhh
Confidence 4556666663 468999999986555443
No 352
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=40.86 E-value=76 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=25.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
|+|||-...+...+.+.|+..|+.+....
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~ 29 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVP 29 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEe
Confidence 68999999999999999999999887653
No 353
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.84 E-value=2.8e+02 Score=25.14 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=40.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.+|+||+ -|.|| .+++..|......+||+-+. .|=-+||. .+..+++...+.+++.+.
T Consensus 68 ~~Dlvi~----iGGDG-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt-~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIV----LGGDG-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLT-EAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEE----EeCcH-HHHHHHHHhcCCCCcEEEEe-------------CCCCcccc-cCCHHHHHHHHHHHHcCC
Confidence 4687776 37788 45566654344578988763 36667887 467789999999998764
No 354
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=40.71 E-value=2.4e+02 Score=24.70 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
++.++.++.....++|||....-.+.+++.+++.+||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 4566777743212799999988888999999999998865
No 355
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=40.66 E-value=1.8e+02 Score=26.79 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=42.9
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhcCcEEEEEC---------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCc
Q 026247 49 FHVLAVDDSLIDR-----KILENLLRVSSYQVTCVD---------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRV 114 (241)
Q Consensus 49 ~~VLIVDDd~~~~-----~~l~~~L~~~g~~V~~~~---------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (241)
-|+|||-|..... ..+...|+..|+++..+. +..++.+.+ ....+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~---------------------~~~~~ 82 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAM---------------------REFEP 82 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH---------------------HhcCC
Confidence 4799998876544 567788887787776553 244555555 45678
Q ss_pred cEEEEeCCCCCCCHHHHHHHH
Q 026247 115 NLIMTDYCMPGMTGYDLLKRL 135 (241)
Q Consensus 115 DlVllD~~mp~~~G~el~~~l 135 (241)
|+||- +.|.+-+++.|.+
T Consensus 83 D~IIa---vGGGSviD~AK~i 100 (375)
T cd08179 83 DWIIA---LGGGSPIDAAKAM 100 (375)
T ss_pred CEEEE---eCCccHHHHHHHH
Confidence 98875 5677777777765
No 356
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=40.58 E-value=1e+02 Score=25.80 Aligned_cols=105 Identities=18% Similarity=0.150 Sum_probs=55.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHhhcCcEEEEECCH---HH-HHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVDDSL---IDRKILENLLRVSSYQVTCVDSG---DK-ALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVDDd~---~~~~~l~~~L~~~g~~V~~~~~~---~e-al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+.+|.+|--|. ...+.|+.+-+..|..+..+.+. .+ +.+.+... ....+|+||+|
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~------------------~~~~~D~vlID 90 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF------------------RKKGYDLVLID 90 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH------------------HHTTSSEEEEE
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH------------------hhcCCCEEEEe
Confidence 44565554332 34566777777788877766532 22 22233111 45679999999
Q ss_pred CCCCCCCH--HHHHHHHhh---cCCCCCcEEEEecCCChHHHHH---HHH-cCCcce-EeCC
Q 026247 121 YCMPGMTG--YDLLKRLKV---SSWKDVPVVVMSSENVPSRVTM---CLE-EGAEEF-LLKP 172 (241)
Q Consensus 121 ~~mp~~~G--~el~~~lr~---~~~~~~pII~lsa~~~~~~~~~---a~~-~Ga~dy-L~KP 172 (241)
. ||++- .+.+.+++. ...+.-.++++++....+.... .++ .|.+++ ++|=
T Consensus 91 T--~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKl 150 (196)
T PF00448_consen 91 T--AGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKL 150 (196)
T ss_dssp E---SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEEST
T ss_pred c--CCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEee
Confidence 8 55433 334444432 2234555777777765555333 333 467766 4553
No 357
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=40.57 E-value=96 Score=22.66 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=39.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++.-+|=|+......+..+...+. .+. ...+..+..+.+ ....||+|++|.-..
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~---------------------~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL---------------------PDGKFDLIVTNPPYG 81 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC---------------------TTT-EEEEEE--STT
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc---------------------cCceeEEEEECCCCc
Confidence 45899999999999999999987765 343 456666665444 567899999997554
No 358
>PRK11018 hypothetical protein; Provisional
Probab=40.24 E-value=1e+02 Score=21.79 Aligned_cols=29 Identities=17% Similarity=0.049 Sum_probs=23.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEE
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCV 78 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~ 78 (241)
.+.|+-|++....-+..+++..||++...
T Consensus 37 ~L~V~~d~~~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 37 ILEVVSDCPQSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred EEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 46667778888888999999999998754
No 359
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.98 E-value=2.8e+02 Score=24.94 Aligned_cols=91 Identities=23% Similarity=0.207 Sum_probs=58.1
Q ss_pred EEEEEeCCHHHH--H--HHHHHH----hhcCc--EE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 50 HVLAVDDSLIDR--K--ILENLL----RVSSY--QV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 50 ~VLIVDDd~~~~--~--~l~~~L----~~~g~--~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
.|||=|.|-... - .+.+.+ +..++ .+ +.+.+.+++.+.+ ...+|+|+
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~----------------------~~gaDiIm 218 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVL----------------------AAGVDTIM 218 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHH----------------------hcCCCEEE
Confidence 477777775542 1 233444 33443 33 4699999999987 34689999
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 119 TDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
+|- |+--++.+.+... +...++-.|+--+.+.+.+....|+| ||
T Consensus 219 LDn----~s~e~l~~av~~~--~~~~~leaSGgI~~~ni~~yA~tGVD-~I 262 (281)
T PRK06543 219 LDN----FSLDDLREGVELV--DGRAIVEASGNVNLNTVGAIASTGVD-VI 262 (281)
T ss_pred ECC----CCHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHHhcCCC-EE
Confidence 995 4433443333311 12236778888889999999999996 44
No 360
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=39.94 E-value=1.3e+02 Score=23.96 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=39.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+.+|.++.+... ...+...... +..+..+.+..++++.| ...+.|+++.|.
T Consensus 109 ~~~~i~~~~g~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~l---------------------~~g~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSSY-ADYLKQQYPS-NINIVEVDSPEEALEAL---------------------LSGRIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSHH-HHHHHHHTHH-TSEEEEESSHHHHHHHH---------------------HTTSSSEEEEEH
T ss_pred cCcccccccchhH-HHHhhhhccc-hhhhcccccHHHHHHHH---------------------hcCCeeeeeccc
Confidence 4568988888653 3344444432 77888899999999999 678999999984
No 361
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=39.91 E-value=2.6e+02 Score=24.50 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=42.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.-+|.-+|-++.....-+..++..|+ .|. ..+++.+.+..+... ......||+|++|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~----------------~~~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIED----------------GKYHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhc----------------cccCCcccEEEecCC
Confidence 45899999999999999999998885 344 467777777665100 001257999999986
No 362
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=39.90 E-value=2.7e+02 Score=24.67 Aligned_cols=76 Identities=8% Similarity=0.250 Sum_probs=45.7
Q ss_pred EEEEE-eCCHH---HHHHHHHHHhhcCcEEE---EE----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 50 HVLAV-DDSLI---DRKILENLLRVSSYQVT---CV----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 50 ~VLIV-DDd~~---~~~~l~~~L~~~g~~V~---~~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
+|.++ .|+.. ....+.+.++..|.++. .+ .+....+..+ ....||+|+
T Consensus 134 ~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l---------------------~~~~pd~v~ 192 (334)
T cd06356 134 KVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKI---------------------QAAKPDFVM 192 (334)
T ss_pred eEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHH---------------------HhcCCCEEE
Confidence 45444 44433 34456677888898774 22 2444444444 456799999
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcEEEE
Q 026247 119 TDYCMPGMTGYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr~~~~~~~pII~l 148 (241)
+- ..+.++..+++.++......+|++..
T Consensus 193 ~~--~~~~~~~~~~~~~~~~G~~~~~~~~~ 220 (334)
T cd06356 193 SI--LVGANHLSFYRQWAAAGLGNIPMASS 220 (334)
T ss_pred Ee--ccCCcHHHHHHHHHHcCCccCceeee
Confidence 63 34556778889888654435676543
No 363
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.89 E-value=3e+02 Score=25.98 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH----HH
Q 026247 56 DSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY----DL 131 (241)
Q Consensus 56 Dd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~----el 131 (241)
=|....+.+...|...||.++. .....|+|++..+--..+.- ..
T Consensus 15 ~N~~ds~~~~~~l~~~g~~~~~--------------------------------~~~~aDvviinTC~v~~~a~~~~~~~ 62 (444)
T PRK14325 15 MNEYDSSKMADLLGAEGYELTD--------------------------------DPEEADLILLNTCSIREKAQEKVFSE 62 (444)
T ss_pred CcHHHHHHHHHHHHHCcCEECC--------------------------------CcCCCCEEEEEcceeeehHHHHHHHH
Confidence 3555667777788778886653 12346999998876543332 22
Q ss_pred ---HHHHhhcCCCCCcEEEEecCCChHHHHHHHH-cCCcceEeCCCChHHHHHHHHHHh
Q 026247 132 ---LKRLKVSSWKDVPVVVMSSENVPSRVTMCLE-EGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 132 ---~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~-~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
++++|. ..|.++|| +++......-.++++ ....||+.-+-....+.+++..+.
T Consensus 63 i~~~~~~k~-~~p~~~vv-vgGc~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~ 119 (444)
T PRK14325 63 LGRWRKLKE-KNPDLIIG-VGGCVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARAR 119 (444)
T ss_pred HHHHHHHHH-hCCCCEEE-EECchhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 333342 34666665 555443334444543 444567888877777777776653
No 364
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.89 E-value=1.7e+02 Score=24.94 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=2.8
Q ss_pred EEEEeC
Q 026247 116 LIMTDY 121 (241)
Q Consensus 116 lVllD~ 121 (241)
+|++|.
T Consensus 82 vV~~~~ 87 (283)
T cd06279 82 VVVVDQ 87 (283)
T ss_pred EEEEec
Confidence 444443
No 365
>PLN02826 dihydroorotate dehydrogenase
Probab=39.71 E-value=60 Score=30.77 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce------EeC-CCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF------LLK-PVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy------L~K-P~~~~~L~~~i~~~l~~ 188 (241)
.++++.++......+|||.+.+-.+.+++.+.+.+||+-. +.+ |.-..++.+-+.+++..
T Consensus 328 l~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~ 394 (409)
T PLN02826 328 TEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAELAACLER 394 (409)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4455666543334799999999999999999999999843 444 65556666666666653
No 366
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=39.68 E-value=1.9e+02 Score=25.19 Aligned_cols=54 Identities=17% Similarity=0.393 Sum_probs=39.7
Q ss_pred cEEEEeCCCCC-CCH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHH-HcCCcceEe
Q 026247 115 NLIMTDYCMPG-MTG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCL-EEGAEEFLL 170 (241)
Q Consensus 115 DlVllD~~mp~-~~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~-~~Ga~dyL~ 170 (241)
.++++|+.--+ +.| ++++++++.. ..+|||+--.-.+.++..+++ ..|+++.+.
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~--~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA--LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh--CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 47888775432 223 5677777743 579999888888899999998 799997754
No 367
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=39.67 E-value=1.6e+02 Score=24.39 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=25.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHH
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDK 83 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~e 83 (241)
|+|+|-..-+...+...|+..|+++....+.++
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~ 34 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPEE 34 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEcChHH
Confidence 889996665666777788999999988866443
No 368
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=39.51 E-value=2.2e+02 Score=25.21 Aligned_cols=92 Identities=21% Similarity=0.239 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHhhc-CcEEE------EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-CC
Q 026247 56 DSLIDRKILENLLRVS-SYQVT------CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-MT 127 (241)
Q Consensus 56 Dd~~~~~~l~~~L~~~-g~~V~------~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~~ 127 (241)
|.......++.++... |+.++ .+.+..+|++.| .+..++=||+-=.-+. .+
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l---------------------~~lG~~rILTSGg~~~a~~ 156 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQL---------------------ADLGVARILTSGQQQDAEQ 156 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHH---------------------HHcCCCEEECCCCCCCHHH
Confidence 5577778888888654 35444 356888899988 4556888998766553 67
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
|++.++.+..... . .+|+.-+-...+.+......|+..|-.
T Consensus 157 g~~~L~~lv~~a~-~-~~Im~GgGV~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 157 GLSLIMELIAASD-G-PIIMAGAGVRLSNLHKFLDAGVREVHS 197 (248)
T ss_pred HHHHHHHHHHhcC-C-CEEEeCCCCCHHHHHHHHHcCCCEEee
Confidence 8999998865432 2 345555555666666667899988863
No 369
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.32 E-value=2.9e+02 Score=24.86 Aligned_cols=109 Identities=21% Similarity=0.222 Sum_probs=61.0
Q ss_pred EEEEE--eCCHH---HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 50 HVLAV--DDSLI---DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 50 ~VLIV--DDd~~---~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+|.|+ .+.+. ....+.++|...|+++.......+.+..- .. ...+.......+|+||+ -
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~-------~~-----~~~~~~~~~~~~d~vi~----~ 69 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGH-------GL-----QTVSRKLLGEVCDLVIV----V 69 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcc-------cc-----cccchhhcccCCCEEEE----E
Confidence 57777 23333 33455666777888887655332221100 00 00000012235788876 3
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|.||- +++..+.....++||+-+.. |=.+||. .++.+++...+.+++.+.
T Consensus 70 GGDGt-~l~~~~~~~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 70 GGDGS-LLGAARALARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred eCcHH-HHHHHHHhcCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 77873 23444422346789886643 5567774 688899999999998754
No 370
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=39.23 E-value=2.3e+02 Score=23.64 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=10.5
Q ss_pred HHHHHHHHhhcCCCCCcEEEEec
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa 150 (241)
|..+++.+.... .-.|.++++
T Consensus 104 ~~~~~~~l~~~g--~~~i~~i~~ 124 (268)
T cd06273 104 GRLAARHLIALG--HRRIAMIFG 124 (268)
T ss_pred HHHHHHHHHHCC--CCeEEEEec
Confidence 445555565332 335666654
No 371
>PRK01581 speE spermidine synthase; Validated
Probab=39.15 E-value=2.6e+02 Score=26.32 Aligned_cols=69 Identities=23% Similarity=0.220 Sum_probs=39.9
Q ss_pred ccEEEEEeCCHHHHHHHHHH--Hh---hc---CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 48 TFHVLAVDDSLIDRKILENL--LR---VS---SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~--L~---~~---g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
..+|.+||=|+.+.+..++. |. .. +-.+. .++|+.+.+.. ....||+||
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----------------------~~~~YDVII 231 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----------------------PSSLYDVII 231 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----------------------cCCCccEEE
Confidence 34788899888887777652 11 11 12343 35666655432 245799999
Q ss_pred EeCCCCCCC------HHHHHHHHhhc
Q 026247 119 TDYCMPGMT------GYDLLKRLKVS 138 (241)
Q Consensus 119 lD~~mp~~~------G~el~~~lr~~ 138 (241)
+|+--|... ..++.+.++..
T Consensus 232 vDl~DP~~~~~~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 232 IDFPDPATELLSTLYTSELFARIATF 257 (374)
T ss_pred EcCCCccccchhhhhHHHHHHHHHHh
Confidence 997544321 23455666543
No 372
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=39.06 E-value=3.1e+02 Score=25.23 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHHH----HHHHHHHhhcCcEEEEECC---------HHHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 49 FHVLAVDDSLIDR----KILENLLRVSSYQVTCVDS---------GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 49 ~~VLIVDDd~~~~----~~l~~~L~~~g~~V~~~~~---------~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
.++|||-|..... ..+.+.|+..|.++..+.. ..++.+.+ ....+|
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~---------------------~~~~~D 87 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVF---------------------KKEGCD 87 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH---------------------HhcCCC
Confidence 4899998866533 4577788777877765532 33444444 456789
Q ss_pred EEEEeCCCCCCCHHHHHHHH
Q 026247 116 LIMTDYCMPGMTGYDLLKRL 135 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~l 135 (241)
+||- ..|.+-+++.|.+
T Consensus 88 ~IIa---vGGGS~iD~aK~i 104 (377)
T cd08176 88 FIIS---IGGGSPHDCAKAI 104 (377)
T ss_pred EEEE---eCCcHHHHHHHHH
Confidence 9874 4566677777765
No 373
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.75 E-value=2.6e+02 Score=24.18 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=35.3
Q ss_pred EeCCCCCCCHHHHHHHHhhc---CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHH
Q 026247 119 TDYCMPGMTGYDLLKRLKVS---SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr~~---~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
+.+.|-.-++++.++.|+.. ..+++ +|=.-.--+.+....+.++|++ ||.-|....++.+...
T Consensus 44 iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~aGA~-FiVsP~~~~~v~~~~~ 109 (222)
T PRK07114 44 FEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQLGAN-FIVTPLFNPDIAKVCN 109 (222)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 33444444566777766522 12222 2223333457777888888885 7777776666655433
No 374
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=38.68 E-value=2.5e+02 Score=25.62 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=55.6
Q ss_pred EEEEEeCCHHHHHHHHHHH-------hhcCc--EE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 50 HVLAVDDSLIDRKILENLL-------RVSSY--QV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L-------~~~g~--~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
.|||=|.|-...-.+...+ +..++ .+ +.+.+.+++.+.+.... ..+..+|+|++
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~----------------~~~agaDiImL 235 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLS----------------DTKTSLTRVML 235 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcc----------------cccCCCCEEEe
Confidence 3666666654433222322 23333 23 45889999998872100 01256899999
Q ss_pred eCC--CCC---CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCc
Q 026247 120 DYC--MPG---MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166 (241)
Q Consensus 120 D~~--mp~---~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~ 166 (241)
|-. -|. .+--++.+.++.. .....+-.|+--..+.+.+....|+|
T Consensus 236 Dnm~~~~~~~~~~~e~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~tGVD 285 (308)
T PLN02716 236 DNMVVPLENGDVDVSMLKEAVELI--NGRFETEASGNVTLDTVHKIGQTGVT 285 (308)
T ss_pred CCCcccccccCCCHHHHHHHHHhh--CCCceEEEECCCCHHHHHHHHHcCCC
Confidence 964 111 0333333333311 12234677888889999999999997
No 375
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=38.64 E-value=2.6e+02 Score=25.54 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHHH----HHHHHHHhhcCcEEEEEC------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 49 FHVLAVDDSLIDR----KILENLLRVSSYQVTCVD------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 49 ~~VLIVDDd~~~~----~~l~~~L~~~g~~V~~~~------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
-++|||-|..... ..+...|+..|+.+..+. +.+...+.+... ....+|+||
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~------------------~~~~~d~Ii 85 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAY------------------REEGCDGVI 85 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHH------------------HhcCCCEEE
Confidence 4889998765544 456777777777665442 333333333211 455689877
Q ss_pred EeCCCCCCCHHHHHHHHh
Q 026247 119 TDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr 136 (241)
- +.|..-+++.+.+.
T Consensus 86 a---iGGGs~~D~AK~va 100 (370)
T cd08551 86 A---VGGGSVLDTAKAIA 100 (370)
T ss_pred E---eCCchHHHHHHHHH
Confidence 4 45666677776653
No 376
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=38.55 E-value=1.6e+02 Score=22.33 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=45.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+++|.|+-|.... .-|+-.|.++..+.+.+++.+.++.+ .+..+.+|++.-.+-..-
T Consensus 3 ~~kIaVIGD~dtv-----~GFrLaGi~~~~v~~~ee~~~~i~~l------------------~~~d~gII~Ite~~a~~i 59 (104)
T PRK01395 3 MYKIGVVGDKDSI-----LPFKALGIDVFPVIDEQEAINTLRKL------------------AMEDYGIIYITEQIAADI 59 (104)
T ss_pred ceeEEEEECHHHH-----HHHHHcCCeeEEecChHHHHHHHHHH------------------hcCCcEEEEEcHHHHHHh
Confidence 4578888884332 22455788888898888888877433 455789999975443211
Q ss_pred HHHHHHHHhhcCCCCCcEEEEe
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~ls 149 (241)
. +.+.+.+ ....|+|+.-
T Consensus 60 ~-~~i~~~~---~~~~P~Il~I 77 (104)
T PRK01395 60 P-ETIERYD---NQVLPAIILI 77 (104)
T ss_pred H-HHHHHhc---CCCCCEEEEe
Confidence 1 1222222 2357766553
No 377
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=38.27 E-value=80 Score=28.43 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=44.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEE-------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTC-------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~-------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
|+|||.-++-.....|...|. .+++|.. ..+.+...+.+ .+.+||+||--.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i---------------------~~~~PDvVIn~A 58 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVI---------------------RETRPDVVINAA 58 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHH---------------------HhhCCCEEEECc
Confidence 469999999999999999998 5677764 34666677777 566899999776
Q ss_pred CCCCCCH
Q 026247 122 CMPGMTG 128 (241)
Q Consensus 122 ~mp~~~G 128 (241)
-+...|+
T Consensus 59 Ayt~vD~ 65 (281)
T COG1091 59 AYTAVDK 65 (281)
T ss_pred ccccccc
Confidence 6655443
No 378
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=38.09 E-value=2.2e+02 Score=23.27 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=34.3
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHHhhc---CCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 113 RVNLIMTDYCMPGMTG-------YDLLKRLKVS---SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G-------~el~~~lr~~---~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
..|.|+++-.-|+..| ++.+++++.. ..+.+||++.- --..+.+.++++.|++.++.-
T Consensus 126 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G-GI~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 126 DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG-GVNDDNARELAEAGADILVAG 193 (210)
T ss_pred hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC-CcCHHHHHHHHHcCCCEEEEC
Confidence 3677777655454443 3344445432 11335665444 345688888899999987654
No 379
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=37.89 E-value=47 Score=28.31 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=26.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
++||++|........+.+.|...|+.+..+..
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~ 32 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRN 32 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEEC
Confidence 58999999888777888999989988776543
No 380
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.60 E-value=2.4e+02 Score=23.49 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=5.2
Q ss_pred CccEEEEeCC
Q 026247 113 RVNLIMTDYC 122 (241)
Q Consensus 113 ~~DlVllD~~ 122 (241)
.+-+|++|-.
T Consensus 78 ~ipvV~i~~~ 87 (270)
T cd06296 78 GIPFVVVDPA 87 (270)
T ss_pred CCCEEEEecc
Confidence 3455555543
No 381
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=37.58 E-value=3e+02 Score=24.52 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=43.1
Q ss_pred CCCccEEEEeCCC-----CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-CCC
Q 026247 111 ESRVNLIMTDYCM-----PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-KPV 173 (241)
Q Consensus 111 ~~~~DlVllD~~m-----p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-KP~ 173 (241)
+.-.|.|.+.-.- .+...++++..++.....++|||+-.+-.+..++.+++..||+.... .|+
T Consensus 191 ~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 191 DAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 4457777765321 12345667777764332369999888888999999999999997743 344
No 382
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=37.57 E-value=3e+02 Score=24.55 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=42.7
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHhhcCcEEEE---EC----CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccE
Q 026247 48 TFHVLAVDDSL----IDRKILENLLRVSSYQVTC---VD----SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNL 116 (241)
Q Consensus 48 ~~~VLIVDDd~----~~~~~l~~~L~~~g~~V~~---~~----~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 116 (241)
..+|.++-++. .....++..++..|.+|+. .. +....+..+ ....||+
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l---------------------~~~~pd~ 191 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKI---------------------KAAKPDV 191 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHH---------------------HHhCCCE
Confidence 34666664332 4445666778888988753 22 333344444 4567999
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCC
Q 026247 117 IMTDYCMPGMTGYDLLKRLKVSSW 140 (241)
Q Consensus 117 VllD~~mp~~~G~el~~~lr~~~~ 140 (241)
|++= ..+.+...+++.++....
T Consensus 192 v~~~--~~~~~~~~~~~~~~~~G~ 213 (348)
T cd06355 192 VVST--VNGDSNVAFFKQLKAAGI 213 (348)
T ss_pred EEEe--ccCCchHHHHHHHHHcCC
Confidence 9873 344567788888886543
No 383
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=37.54 E-value=2.4e+02 Score=24.14 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 141 KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 141 ~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..+|||+.-.....+ .+..|-.+++..+.+.+++.+.+.+++.
T Consensus 322 ~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 322 AGKPVLASVDGESAE----LVEEAGAGLVVPPGDPEALAAAILELLD 364 (394)
T ss_pred CCCcEEEecCCCchh----hhccCCcceEeCCCCHHHHHHHHHHHHh
Confidence 467887553332222 3344567889999999999999999884
No 384
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=37.48 E-value=2.5e+02 Score=23.60 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.7
Q ss_pred HHHHHhhcCcEEE
Q 026247 64 LENLLRVSSYQVT 76 (241)
Q Consensus 64 l~~~L~~~g~~V~ 76 (241)
+.+.++..||++.
T Consensus 32 i~~~~~~~g~~~~ 44 (275)
T cd06295 32 IADALAERGYDLL 44 (275)
T ss_pred HHHHHHHcCCEEE
Confidence 3344444455443
No 385
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=37.35 E-value=86 Score=24.82 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=26.1
Q ss_pred CCCcEE--EEecCCChHHHHHHHHcCCcceEeCCC
Q 026247 141 KDVPVV--VMSSENVPSRVTMCLEEGAEEFLLKPV 173 (241)
Q Consensus 141 ~~~pII--~lsa~~~~~~~~~a~~~Ga~dyL~KP~ 173 (241)
+.+.|| +.|+..+.+.+.+|+.-|||+.++--.
T Consensus 28 ~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC 62 (132)
T COG1908 28 PNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGC 62 (132)
T ss_pred CceEEEEeeccCccCHHHHHHHHHcCCCeEEEecc
Confidence 455554 458899999999999999999877543
No 386
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.28 E-value=2.6e+02 Score=23.79 Aligned_cols=86 Identities=10% Similarity=0.168 Sum_probs=55.9
Q ss_pred EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCCh
Q 026247 75 VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVP 154 (241)
Q Consensus 75 V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~ 154 (241)
|....+.+++++..+.+ .+.-+.+ +.+.|-.-+.++.++.++.. ++++ +|=.-.--+.
T Consensus 9 Vir~~~~~~a~~ia~al------------------~~gGi~~--iEit~~tp~a~~~I~~l~~~-~~~~-~vGAGTVl~~ 66 (201)
T PRK06015 9 VLLIDDVEHAVPLARAL------------------AAGGLPA--IEITLRTPAALDAIRAVAAE-VEEA-IVGAGTILNA 66 (201)
T ss_pred EEEcCCHHHHHHHHHHH------------------HHCCCCE--EEEeCCCccHHHHHHHHHHH-CCCC-EEeeEeCcCH
Confidence 33456777777766433 3344444 45555566699999999844 3443 2333334568
Q ss_pred HHHHHHHHcCCcceEeCCCChHHHHHHHH
Q 026247 155 SRVTMCLEEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 155 ~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
+...++.++|++ ||.-|....++.+..+
T Consensus 67 e~a~~ai~aGA~-FivSP~~~~~vi~~a~ 94 (201)
T PRK06015 67 KQFEDAAKAGSR-FIVSPGTTQELLAAAN 94 (201)
T ss_pred HHHHHHHHcCCC-EEECCCCCHHHHHHHH
Confidence 889999999996 8888887777766543
No 387
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=37.24 E-value=73 Score=24.85 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCCcEEEE--ecCCChHHHHHHHHcCCcceEeC
Q 026247 129 YDLLKRLKVSSWKDVPVVVM--SSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~l--sa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.+++...+....+.+.||-+ |+.-+...+.+|+..|||+.++=
T Consensus 15 ad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~ 59 (124)
T PF02662_consen 15 ADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVA 59 (124)
T ss_pred HHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEe
Confidence 34444333222234555544 88889999999999999999983
No 388
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=37.19 E-value=1.8e+02 Score=24.92 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=42.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
.-+|.-+|-++......++.++..|+. +. ..+++.+.+..+.. ......||+|++|..
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~-----------------~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN-----------------NDPKPEFDFAFVDAD 153 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh-----------------CCCCCCCCEEEECCC
Confidence 348999999999999999999988863 43 45677777665510 001357999999964
No 389
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=37.02 E-value=50 Score=32.32 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=25.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcE-EEEE
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQ-VTCV 78 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~ 78 (241)
+|||||..-.+-..+.++|++.|.. |...
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~ 30 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVV 30 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEE
Confidence 4899999999999999999999985 6665
No 390
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.76 E-value=2.8e+02 Score=24.96 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=44.7
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
..+.+.+++.+.+ ...+|+|++|-. +--++-+.+.... ... ++..|+--+.+
T Consensus 199 VEv~tleea~ea~----------------------~~gaDiI~LDn~----s~e~l~~av~~~~-~~~-~leaSGGI~~~ 250 (281)
T PRK06106 199 VEVDTLDQLEEAL----------------------ELGVDAVLLDNM----TPDTLREAVAIVA-GRA-ITEASGRITPE 250 (281)
T ss_pred EEeCCHHHHHHHH----------------------HcCCCEEEeCCC----CHHHHHHHHHHhC-CCc-eEEEECCCCHH
Confidence 4689999999987 346899999953 3334433333111 223 36778888889
Q ss_pred HHHHHHHcCCcce
Q 026247 156 RVTMCLEEGAEEF 168 (241)
Q Consensus 156 ~~~~a~~~Ga~dy 168 (241)
.+.+..+.|+|-+
T Consensus 251 ni~~yA~tGVD~I 263 (281)
T PRK06106 251 TAPAIAASGVDLI 263 (281)
T ss_pred HHHHHHhcCCCEE
Confidence 9999999999733
No 391
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=36.74 E-value=31 Score=28.93 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=23.7
Q ss_pred cCCCccEEEEeCCCCCCCH-------HHHHHHHhhcCCCCCcEEEEecC
Q 026247 110 EESRVNLIMTDYCMPGMTG-------YDLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G-------~el~~~lr~~~~~~~pII~lsa~ 151 (241)
.+...|++++|+... ++. ..+++.|| ..+|++|||+++..
T Consensus 56 a~~~a~~~~ld~~~N-~~~~~~~~~~~~fv~~iR-~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 56 AEIDADLIVLDCGPN-MSPEEFRERLDGFVKTIR-EAHPDTPILLVSPI 102 (178)
T ss_dssp HHS--SEEEEEESHH-CCTTTHHHHHHHHHHHHH-TT-SSS-EEEEE--
T ss_pred hcCCCCEEEEEeecC-CCHHHHHHHHHHHHHHHH-HhCCCCCEEEEecC
Confidence 344679999998532 332 24666777 56799999999864
No 392
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=36.62 E-value=3e+02 Score=25.71 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=48.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE-E-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ-V-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~-V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+|+.+|-++...+.++.-++..|.. + ....++.. ++. ....||+|++|- |+
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~---~l~--------------------~~~~fD~V~lDP--~G- 135 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA---LLH--------------------EERKFDVVDIDP--FG- 135 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH---HHh--------------------hcCCCCEEEECC--CC-
Confidence 36999999999888888888766653 2 23334333 331 134599999995 43
Q ss_pred CHHHHHHH-HhhcCCCCCcEEEEecCCCh
Q 026247 127 TGYDLLKR-LKVSSWKDVPVVVMSSENVP 154 (241)
Q Consensus 127 ~G~el~~~-lr~~~~~~~pII~lsa~~~~ 154 (241)
.+.+++.. ++.. ..--+|.+|+.+..
T Consensus 136 s~~~~l~~al~~~--~~~gilyvSAtD~~ 162 (382)
T PRK04338 136 SPAPFLDSAIRSV--KRGGLLCVTATDTA 162 (382)
T ss_pred CcHHHHHHHHHHh--cCCCEEEEEecCch
Confidence 44566665 5432 23357888876643
No 393
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=36.53 E-value=1.2e+02 Score=21.29 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=23.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal 85 (241)
+|+++.++..........|+..||++.....|-.++
T Consensus 53 ~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~~w 88 (90)
T cd01524 53 EIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYKTY 88 (90)
T ss_pred cEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHHHh
Confidence 466665555445556678888999777776665554
No 394
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=36.52 E-value=1.1e+02 Score=29.38 Aligned_cols=57 Identities=12% Similarity=0.319 Sum_probs=40.8
Q ss_pred cCCCccEEEEeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 110 EESRVNLIMTDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
.....|+|++|-.-.. .--+++++++|+ .+|+..||. ..-...+.....+.+|||+.
T Consensus 260 ~~aGvdvviLDSSqGnS~~qiemik~iK~-~yP~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 260 VQAGVDVVILDSSQGNSIYQLEMIKYIKE-TYPDLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred hhcCCcEEEEecCCCcchhHHHHHHHHHh-hCCCceeec-cceeeHHHHHHHHHccCcee
Confidence 5567899999986543 335788999994 568887763 22334567778899999965
No 395
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=36.51 E-value=3.4e+02 Score=24.93 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHH----HHHHHHHhhcCcEEEEEC---------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 49 FHVLAVDDSLIDR----KILENLLRVSSYQVTCVD---------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 49 ~~VLIVDDd~~~~----~~l~~~L~~~g~~V~~~~---------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
-++|||-|..... ..+...|+..|..+..+. +..++.+.+ .+..+|
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~---------------------~~~~~d 85 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALY---------------------RENGCD 85 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHH---------------------HhcCCC
Confidence 4899998765432 346667777787766543 234555555 456789
Q ss_pred EEEEeCCCCCCCHHHHHHHH
Q 026247 116 LIMTDYCMPGMTGYDLLKRL 135 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~l 135 (241)
+||- +.|.+-+++.+.+
T Consensus 86 ~IIa---iGGGS~~D~aK~i 102 (374)
T cd08189 86 AILA---VGGGSVIDCAKAI 102 (374)
T ss_pred EEEE---eCCccHHHHHHHH
Confidence 8874 4566667776655
No 396
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=36.47 E-value=3e+02 Score=24.49 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=44.9
Q ss_pred cCCCccEEEEeCCCCCC--CHHH----HHHHHhhcCCCCCc-EEEEecCCC---hHHHHHHHHcCCcce-EeCCCChHHH
Q 026247 110 EESRVNLIMTDYCMPGM--TGYD----LLKRLKVSSWKDVP-VVVMSSENV---PSRVTMCLEEGAEEF-LLKPVRLSDL 178 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~--~G~e----l~~~lr~~~~~~~p-II~lsa~~~---~~~~~~a~~~Ga~dy-L~KP~~~~~L 178 (241)
....+|.|++|+.=... +--+ +...++........ +|=+-+.+. ..++...+..|++++ |+|--+.+++
T Consensus 21 ~~~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~givlPKv~s~~~v 100 (288)
T TIGR01588 21 FIYGADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGVDVVRLPKTDTAEDI 100 (288)
T ss_pred hhcCCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCCCEEEeCCCCCHHHH
Confidence 34579999999975433 3333 34444432222223 444433222 367888899999988 6677777777
Q ss_pred HHHHHH
Q 026247 179 EKLQPR 184 (241)
Q Consensus 179 ~~~i~~ 184 (241)
..+...
T Consensus 101 ~~~~~~ 106 (288)
T TIGR01588 101 HELEKL 106 (288)
T ss_pred HHHHHH
Confidence 665433
No 397
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=36.41 E-value=3.1e+02 Score=25.77 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=39.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC------CcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG------AEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G------a~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++--. -+.-|+..++.+. ..+|+|+-...+..+ .+..| .++|+..|.+.++|...+.+++.
T Consensus 366 aDv~l~pS~-~E~~gl~~lEAma----~G~pvI~s~~gg~~e----~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 366 ADFILMPSR-FEPCGLTQLYAMR----YGTVPIVRRTGGLAD----TVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred CCEEEeCCC-cCCcHHHHHHHHH----CCCCeEEccCCCccc----eEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 566665322 2344566655554 356666432222222 22334 78999999999999999988875
No 398
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=36.39 E-value=3.6e+02 Score=25.18 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=37.8
Q ss_pred cCCCccEEEEeCCC-------CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 110 EESRVNLIMTDYCM-------PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 110 ~~~~~DlVllD~~m-------p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
.+...|+|.++-.. ...+-.++.+.++ . .++|||+ ..-.+.+...++++.|++.++
T Consensus 152 ~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~-~--~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 152 VKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG-E--LDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred HHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH-H--CCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 56678999987321 2334445544444 2 3689875 455668888899999999877
No 399
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.29 E-value=1.1e+02 Score=27.15 Aligned_cols=59 Identities=10% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce------EeCCCChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF------LLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy------L~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++++.++.. .++|||....-.+.+++.+++.+||+.. +.-|.-...+.+-+.+++...
T Consensus 220 ~~~i~~i~~~--~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKA--VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHh--cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 4677777743 3689999888888999999999999754 345666667777777776543
No 400
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=36.18 E-value=4e+02 Score=25.62 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=29.7
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
++++..++.. ....+|||+=.+-....++.+|+.+||+....
T Consensus 317 ~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 317 ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 4455444422 22468888877888899999999999996644
No 401
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.13 E-value=3e+02 Score=27.17 Aligned_cols=58 Identities=17% Similarity=0.362 Sum_probs=40.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.+|+||+ -|.||- +++..|......+||+-+. .|=.+||. .++.+++...+.+++.+.
T Consensus 348 ~~dlvi~----lGGDGT-~L~aa~~~~~~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIIS----IGGDGT-VLRASKLVNGEEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhcCCCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHcCC
Confidence 4677776 377874 4455553334578988663 35677887 788899999999998764
No 402
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=36.10 E-value=2.1e+02 Score=22.40 Aligned_cols=57 Identities=25% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCccEEEEeCCCCCCCHH-------HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVNLIMTDYCMPGMTGY-------DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~-------el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
...|.|.++...++..+. ..+..++ ....+||++..+-...+...+++..|++.+..
T Consensus 135 ~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 135 AGVDEVGLGNGGGGGGGRDAVPIADLLLILAK--RGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred cCCCEEEEcCCcCCCCCccCchhHHHHHHHHH--hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 357889888877654321 3334443 23578998887777778899999999987753
No 403
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=36.04 E-value=2e+02 Score=24.62 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=41.1
Q ss_pred CccEEEEeCCCCC-CCH--HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIMTDYCMPG-MTG--YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVllD~~mp~-~~G--~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.-.+|++|+.--+ +.| +++++.++.. -.+|+|+--+-.+.++..++.+.|+++.+.
T Consensus 161 ~~~ii~tdi~~dGt~~G~d~~~~~~l~~~--~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 161 AGEIILTDIDRDGTMQGPDLELLKQLAEA--VNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp -SEEEEEETTTTTTSSS--HHHHHHHHHH--HSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CcEEEEeeccccCCcCCCCHHHHHHHHHH--cCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3468999997765 344 4667777643 278999888878899999999999998875
No 404
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.02 E-value=3.3e+02 Score=24.62 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhc------CcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 51 VLAVDDSLIDRKILENLLRVS------SYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~------g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
|||=|.|-...-.+...++.. ...|.. +.+.+++.+.+ +..+|+|++|
T Consensus 170 iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~----------------------~agaDiImLD--- 224 (290)
T PRK06559 170 IMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAA----------------------AAGADIIMLD--- 224 (290)
T ss_pred EEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHH----------------------HcCCCEEEEC---
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCc
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~ 166 (241)
.|+--++-+.+. ..+.-.++-.|+--..+.+......|+|
T Consensus 225 -nmspe~l~~av~--~~~~~~~leaSGGI~~~ni~~yA~tGVD 264 (290)
T PRK06559 225 -NMSLEQIEQAIT--LIAGRSRIECSGNIDMTTISRFRGLAID 264 (290)
T ss_pred -CCCHHHHHHHHH--HhcCceEEEEECCCCHHHHHHHHhcCCC
No 405
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.97 E-value=2.8e+02 Score=23.70 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred HHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-CCCHHHHHHHHhhcCCC
Q 026247 64 LENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-GMTGYDLLKRLKVSSWK 141 (241)
Q Consensus 64 l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~~~G~el~~~lr~~~~~ 141 (241)
+.+.....|.-+. .+.+..|+.+.+ ...+|+|=+ .| +.-|.+.++.++. ..+
T Consensus 101 v~~~~~~~~i~~iPG~~T~~E~~~A~----------------------~~Gad~vkl---FPa~~~G~~~ik~l~~-~~p 154 (213)
T PRK06552 101 TAKICNLYQIPYLPGCMTVTEIVTAL----------------------EAGSEIVKL---FPGSTLGPSFIKAIKG-PLP 154 (213)
T ss_pred HHHHHHHcCCCEECCcCCHHHHHHHH----------------------HcCCCEEEE---CCcccCCHHHHHHHhh-hCC
Confidence 3444445665444 477888887776 345677776 34 3457888999984 567
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 142 DVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 142 ~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
++|++. |+--+.+.+.+.+++|++.+
T Consensus 155 ~ip~~a-tGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 155 QVNVMV-TGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred CCEEEE-ECCCCHHHHHHHHHCCCcEE
Confidence 899874 55566889999999998865
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.95 E-value=3.4e+02 Score=25.83 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=53.9
Q ss_pred HHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH--HHHHHHHhh---c
Q 026247 64 LENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG--YDLLKRLKV---S 138 (241)
Q Consensus 64 l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G--~el~~~lr~---~ 138 (241)
+..+-+..|+.+..+.+..+....+. .-..+|+||+|. +||.- ..+.+.++. .
T Consensus 240 L~~~a~ilGvp~~~v~~~~dl~~al~--------------------~l~~~d~VLIDT--aGrsqrd~~~~~~l~~l~~~ 297 (420)
T PRK14721 240 LRIYGKLLGVSVRSIKDIADLQLMLH--------------------ELRGKHMVLIDT--VGMSQRDQMLAEQIAMLSQC 297 (420)
T ss_pred HHHHHHHcCCceecCCCHHHHHHHHH--------------------HhcCCCEEEecC--CCCCcchHHHHHHHHHHhcc
Confidence 33444456777777777777655542 234689999997 57664 223344432 1
Q ss_pred CCCCCcEEEEecCCChHHHHHH----HHcCCcce-EeCCCChHHHHHHHHHH
Q 026247 139 SWKDVPVVVMSSENVPSRVTMC----LEEGAEEF-LLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 139 ~~~~~pII~lsa~~~~~~~~~a----~~~Ga~dy-L~KP~~~~~L~~~i~~~ 185 (241)
..+.-.++++++........+. ...|.+++ ++|=-....+-.++.-+
T Consensus 298 ~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~~~ 349 (420)
T PRK14721 298 GTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALDAV 349 (420)
T ss_pred CCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHHHH
Confidence 2233346777776555544433 24677776 44533333333333333
No 407
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.91 E-value=2.7e+02 Score=23.47 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH-HHHHHHHhh
Q 026247 62 KILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG-YDLLKRLKV 137 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G-~el~~~lr~ 137 (241)
..+.+.++..||++..+. +.+.-.+.+..+ ....+|.||+--. +.++ .+.+++++.
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~------------------~~~~~Dgiii~~~--~~~~~~~~i~~~~~ 78 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDL------------------LTRGVNVLIINPV--DPEGLVPAVAAAKA 78 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHH------------------HHcCCCEEEEecC--CccchHHHHHHHHH
Confidence 345666678899887654 332222333211 4567998887432 2222 345566553
Q ss_pred cCCCCCcEEEEe
Q 026247 138 SSWKDVPVVVMS 149 (241)
Q Consensus 138 ~~~~~~pII~ls 149 (241)
..+|||++-
T Consensus 79 ---~~iPvV~~~ 87 (282)
T cd06318 79 ---AGVPVVVVD 87 (282)
T ss_pred ---CCCCEEEec
Confidence 367777764
No 408
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=35.75 E-value=1.3e+02 Score=26.29 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=35.0
Q ss_pred ccEEEEeCC---------CCCCCHHHHHHHHhhcCCCCCcEEEEecCCC---hHHHHHHHHcCCcceEeCCCC
Q 026247 114 VNLIMTDYC---------MPGMTGYDLLKRLKVSSWKDVPVVVMSSENV---PSRVTMCLEEGAEEFLLKPVR 174 (241)
Q Consensus 114 ~DlVllD~~---------mp~~~G~el~~~lr~~~~~~~pII~lsa~~~---~~~~~~a~~~Ga~dyL~KP~~ 174 (241)
++++++|+. .|+ ..+++++++. ..++++++|+... .....+....|++.--.+.++
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~g--a~e~l~~L~~---~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~t 69 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPG--APELLDRLAR---AGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFS 69 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcC--HHHHHHHHHH---CCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEec
Confidence 567787774 233 5678888874 4689999998653 344455667777533333444
No 409
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=35.74 E-value=76 Score=28.67 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=42.6
Q ss_pred HHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcc------eEeC-CCChHHHHHHHHHHhcCCC
Q 026247 132 LKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE------FLLK-PVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 132 ~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~d------yL~K-P~~~~~L~~~i~~~l~~~~ 190 (241)
+..++....+++|||.+.+-.+.+++.+.+.+||+. ++.+ |--..++.+-+.+++....
T Consensus 231 v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g 296 (310)
T PRK02506 231 VRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEKG 296 (310)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 333433333479999999999999999999999984 3544 6666777777777775443
No 410
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.57 E-value=98 Score=29.96 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=41.0
Q ss_pred CCCccEEEEeCCC-CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 111 ESRVNLIMTDYCM-PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 111 ~~~~DlVllD~~m-p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
....|+|.+|..- +...-++++++||. .+|+++||+ -.-...+....+.++|||..-
T Consensus 237 ~aGvd~i~~D~a~~~~~~~~~~i~~ik~-~~p~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 237 EAGVDVLVVDTAHGHQEKMLEALRAVRA-LDPGVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred HhCCCEEEEeccCCccHHHHHHHHHHHH-HCCCCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 4568999999755 34556788899985 457776653 244557888889999998653
No 411
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=35.53 E-value=3.4e+02 Score=24.83 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=41.0
Q ss_pred cEEEEEeCCHH-HHHHHHHHHhhcCcEEEEEC---------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 49 FHVLAVDDSLI-DRKILENLLRVSSYQVTCVD---------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 49 ~~VLIVDDd~~-~~~~l~~~L~~~g~~V~~~~---------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
-|+|||-|... ....+.+.|+..|+.+..+. +..++.+.+ ....+|+||
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~---------------------~~~~~D~II 82 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLL---------------------REFGPDAVL 82 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHH---------------------HhcCcCEEE
Confidence 37888877655 45667788887776665432 234455554 456789886
Q ss_pred EeCCCCCCCHHHHHHHHh
Q 026247 119 TDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr 136 (241)
- +.|.+-+++.+.+.
T Consensus 83 a---vGGGs~~D~aK~ia 97 (367)
T cd08182 83 A---VGGGSVLDTAKALA 97 (367)
T ss_pred E---eCCcHHHHHHHHHH
Confidence 3 45666677776654
No 412
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.46 E-value=1.9e+02 Score=23.98 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=27.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
.|+|+|=--.+...+.+.|+..|..+....+.
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~ 32 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDP 32 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCH
Confidence 37889988888899999999999999887764
No 413
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=35.45 E-value=1.1e+02 Score=20.96 Aligned_cols=30 Identities=3% Similarity=0.066 Sum_probs=24.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
.+.|+-||+....-+..+++..||++....
T Consensus 28 ~l~V~~dd~~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 28 TLLVLATDPSTTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred EEEEEeCCCchHHHHHHHHHHcCCEEEEEE
Confidence 356666777788889999999999987654
No 414
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.35 E-value=2.5e+02 Score=23.88 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCcc-EEEEeCC---CCCCCHHHHHHHHhhcCCCCCcEEEEecCCCh
Q 026247 79 DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN-LIMTDYC---MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVP 154 (241)
Q Consensus 79 ~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D-lVllD~~---mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~ 154 (241)
.+..+..+.+ ....+| ++++|+. .-...-++++++++.. ..+||++--+-.+.
T Consensus 27 ~d~~~~a~~~---------------------~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~--~~~pv~~~GGI~s~ 83 (243)
T cd04731 27 GDPVELAKRY---------------------NEQGADELVFLDITASSEGRETMLDVVERVAEE--VFIPLTVGGGIRSL 83 (243)
T ss_pred CCHHHHHHHH---------------------HHCCCCEEEEEcCCcccccCcccHHHHHHHHHh--CCCCEEEeCCCCCH
Q ss_pred HHHHHHHHcCCcceEe
Q 026247 155 SRVTMCLEEGAEEFLL 170 (241)
Q Consensus 155 ~~~~~a~~~Ga~dyL~ 170 (241)
+.+.+++..|++..+.
T Consensus 84 ~d~~~~l~~G~~~v~i 99 (243)
T cd04731 84 EDARRLLRAGADKVSI 99 (243)
T ss_pred HHHHHHHHcCCceEEE
No 415
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=35.31 E-value=3.3e+02 Score=24.39 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=61.8
Q ss_pred EEEEE--eCCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 50 HVLAV--DDSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 50 ~VLIV--DDd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+|+|+ .+.+.. ...+.+.|+..|+++.........+.... ... .........+|+||+ -
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~----~~~--------~~~~~~~~~~d~vi~----~ 70 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTG----YPA--------LTPEEIGARADLAVV----L 70 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccc----ccc--------cChhHhccCCCEEEE----E
Confidence 47777 333333 34556666678888776543322211100 000 000001235788887 3
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|.||- +++.++.....++|++-+. .|=-+||. .+..+++...+.+++.+.
T Consensus 71 GGDGt-~l~~~~~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 71 GGDGT-MLGIGRQLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCcHH-HHHHHHHhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 77874 3455553334578988654 45557887 788899999999988654
No 416
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.28 E-value=2.2e+02 Score=23.88 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=5.0
Q ss_pred ccEEEEeCCC
Q 026247 114 VNLIMTDYCM 123 (241)
Q Consensus 114 ~DlVllD~~m 123 (241)
.-+|++|..+
T Consensus 84 ipvV~i~~~~ 93 (273)
T cd06292 84 LPVVLVNGRA 93 (273)
T ss_pred CCEEEEcCCC
Confidence 3455555443
No 417
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=35.26 E-value=73 Score=27.37 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=34.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal 85 (241)
+++|.|||=..-+...+...|++.|+++....+.++..
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~ 38 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL 38 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHh
Confidence 35899999999999999999999999999998888853
No 418
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=35.08 E-value=1.4e+02 Score=26.40 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCcEEEEEC-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 59 IDRKILENLLRVSSYQVTCVD-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 59 ~~~~~l~~~L~~~g~~V~~~~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.....+.+.|.+.||++..+. ++.+.+..+ ....||+|+.=+
T Consensus 22 ~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l---------------------~~~~~d~vf~~l 64 (296)
T PRK14569 22 KSGKAVLDSLISQGYDAVGVDASGKELVAKL---------------------LELKPDKCFVAL 64 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCchhHHHHh---------------------hccCCCEEEEeC
Confidence 445567777888999988775 344555544 345689888844
No 419
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.02 E-value=2.7e+02 Score=23.29 Aligned_cols=71 Identities=18% Similarity=0.075 Sum_probs=38.1
Q ss_pred CHHHH---HHHHHHHhhcCcEEEEEC-----CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 57 SLIDR---KILENLLRVSSYQVTCVD-----SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 57 d~~~~---~~l~~~L~~~g~~V~~~~-----~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++... ..+++.++..||.+..+. +.....+.+..+ ....+|-||+-- ...+.
T Consensus 11 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l------------------~~~~vdgvii~~--~~~~~ 70 (273)
T cd06310 11 SDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENA------------------IARGPDAILLAP--TDAKA 70 (273)
T ss_pred cHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHH------------------HHhCCCEEEEcC--CChhh
Confidence 55554 445566678899887653 333333443211 345689888732 11121
Q ss_pred -HHHHHHHhhcCCCCCcEEEEec
Q 026247 129 -YDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 129 -~el~~~lr~~~~~~~pII~lsa 150 (241)
.+.++.++. ..+|+|++..
T Consensus 71 ~~~~l~~~~~---~~ipvV~~~~ 90 (273)
T cd06310 71 LVPPLKEAKD---AGIPVVLIDS 90 (273)
T ss_pred hHHHHHHHHH---CCCCEEEecC
Confidence 345565552 4578877743
No 420
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.94 E-value=1.8e+02 Score=27.86 Aligned_cols=75 Identities=11% Similarity=0.171 Sum_probs=47.5
Q ss_pred CccEEEEeCCCCCCC----HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 113 RVNLIMTDYCMPGMT----GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 113 ~~DlVllD~~mp~~~----G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.-|+||++.+-=.-+ -+..+.+++... |+. +|++|+......-.......-.|++.=|-+...+.++|.+.+.+
T Consensus 40 eADvviiNTC~V~~~a~~k~~~~i~~~~~~~-p~~-~iiVtGC~aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~ 117 (437)
T COG0621 40 EADVVIINTCAVREKAEQKVRSAIGELKKLK-PDA-KIIVTGCLAQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRG 117 (437)
T ss_pred cCCEEEEecCeeeehHHHHHHHHHHHHHHhC-CCC-EEEEeCCccccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhc
Confidence 368999998654322 344555555333 444 55666665444433334555577888999999998899988754
Q ss_pred C
Q 026247 189 P 189 (241)
Q Consensus 189 ~ 189 (241)
.
T Consensus 118 ~ 118 (437)
T COG0621 118 K 118 (437)
T ss_pred c
Confidence 3
No 421
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.81 E-value=3.5e+02 Score=24.53 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=39.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.+|+|++ -|.||- +++..|......+||+-+- .|=.+||.- +..+++...+.+++.+.
T Consensus 72 ~~D~vi~----lGGDGT-~L~aar~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCELVLV----LGGDGT-ILRAAELARAADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCEEEE----EcCCHH-HHHHHHHhccCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 4687776 377883 3344443333578988664 366788874 77889999999998764
No 422
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=34.73 E-value=69 Score=26.19 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 63 ILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
.+.++.+++||.|..++.++-|...+
T Consensus 77 ~l~~lae~~g~~v~i~~Ggt~ar~~i 102 (158)
T PF01976_consen 77 DLKKLAEKYGYKVYIATGGTLARKII 102 (158)
T ss_pred HHHHHHHHcCCEEEEEcChHHHHHHH
Confidence 35666778999999999999999998
No 423
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=34.54 E-value=1.6e+02 Score=26.48 Aligned_cols=53 Identities=21% Similarity=0.131 Sum_probs=33.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE---EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ---VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~---V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+|.-||-........++-+.-.|+. +. ...+.-+.++.++ ...+||+||+|-
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~--------------------~~~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK--------------------KGGRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH--------------------HTT-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh--------------------cCCCCCEEEECC
Confidence 46889999888888888887766643 22 4566666665552 345899999995
No 424
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=34.53 E-value=2.3e+02 Score=26.95 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=59.8
Q ss_pred cccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 43 QQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 43 ~~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
........|||+--.--....+.+.|.+.||.|.. +.+.+.+..++ ....-|..+.|+
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~---------------------~~~~~d~~~~~v 132 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLL---------------------GVFFVDLGLQNV 132 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhh---------------------ccccccccccee
Confidence 34445568999999999999999999989999874 78999998887 223467888888
Q ss_pred CCCCCCHHHHHHHHhhc
Q 026247 122 CMPGMTGYDLLKRLKVS 138 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~ 138 (241)
..+...+.+.+..+...
T Consensus 133 ~~~~~~~~d~~~~~~~~ 149 (411)
T KOG1203|consen 133 EADVVTAIDILKKLVEA 149 (411)
T ss_pred eeccccccchhhhhhhh
Confidence 88888888888887743
No 425
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.36 E-value=1.9e+02 Score=21.38 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=15.1
Q ss_pred eCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 55 DDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
|.+......+...|...||.+....
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~ 33 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATE 33 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEch
Confidence 4444444455566666899886543
No 426
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=33.98 E-value=1.4e+02 Score=20.41 Aligned_cols=30 Identities=0% Similarity=-0.083 Sum_probs=24.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
.+.|+-|++....-+..+.+..||++....
T Consensus 28 ~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 28 QLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred EEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 467777888888899999999999987654
No 427
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=33.95 E-value=1.8e+02 Score=25.75 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
|+.+..+....-..+++.+...-.-...+.+.+++.+.+ ...+|.|.+|-.-|
T Consensus 160 Hi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~----------------------~~gaD~I~ld~~~~----- 212 (269)
T cd01568 160 HIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEAL----------------------EAGADIIMLDNMSP----- 212 (269)
T ss_pred HHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHH----------------------HcCCCEEEECCCCH-----
Q ss_pred HHHHHHhhcCCC--CCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 130 DLLKRLKVSSWK--DVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 130 el~~~lr~~~~~--~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
+-++++...... .+| |..++--+.+.+.+..+.|++.+
T Consensus 213 e~l~~~v~~i~~~~~i~-i~asGGIt~~ni~~~a~~Gad~I 252 (269)
T cd01568 213 EELKEAVKLLKGLPRVL-LEASGGITLENIRAYAETGVDVI 252 (269)
T ss_pred HHHHHHHHHhccCCCeE-EEEECCCCHHHHHHHHHcCCCEE
No 428
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.91 E-value=3e+02 Score=23.49 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred HHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCc
Q 026247 66 NLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVP 144 (241)
Q Consensus 66 ~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~p 144 (241)
+.|...+. -|....+.++++...+.+ ...-+. ++.+.|-.-++++.++.++... ++-|
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al------------------~~~Gi~--~iEit~~~~~a~~~i~~l~~~~-~~~p 66 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV------------------IKGGIK--AIEVTYTNPFASEVIKELVELY-KDDP 66 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH------------------HHCCCC--EEEEECCCccHHHHHHHHHHHc-CCCC
Confidence 44454553 344556677766665433 222333 3344444555788888887432 2212
Q ss_pred --EEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHH
Q 026247 145 --VVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 145 --II~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i 182 (241)
+|-.-.--+.+....+.++|++ ||.-|....++.+..
T Consensus 67 ~~~vGaGTV~~~~~~~~a~~aGA~-FivsP~~~~~v~~~~ 105 (213)
T PRK06552 67 EVLIGAGTVLDAVTARLAILAGAQ-FIVSPSFNRETAKIC 105 (213)
T ss_pred CeEEeeeeCCCHHHHHHHHHcCCC-EEECCCCCHHHHHHH
Confidence 2333333467788888899985 777787777766543
No 429
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.90 E-value=1.9e+02 Score=21.65 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC--CCHHHHHH
Q 026247 56 DSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG--MTGYDLLK 133 (241)
Q Consensus 56 Dd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~--~~G~el~~ 133 (241)
........+...|...|..+....+.......+. .-.+-|++|+ +..++ .+-.++++
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~--------------------~~~~~d~vi~-iS~sG~t~~~~~~~~ 68 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHPTEALHGDLG--------------------MVTPGDVVIA-ISNSGETDELLNLLP 68 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEcccchhhccccC--------------------cCCCCCEEEE-EeCCCCCHHHHHHHH
Confidence 3445566777777778888777655433222220 1122344443 33444 33456666
Q ss_pred HHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 134 RLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 134 ~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
..|. .++|||.+|+..+..... .++..|.-|
T Consensus 69 ~a~~---~g~~vi~iT~~~~s~la~-----~ad~~l~~~ 99 (128)
T cd05014 69 HLKR---RGAPIIAITGNPNSTLAK-----LSDVVLDLP 99 (128)
T ss_pred HHHH---CCCeEEEEeCCCCCchhh-----hCCEEEECC
Confidence 6664 468999999987665543 355555544
No 430
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=33.89 E-value=2.8e+02 Score=24.07 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=45.2
Q ss_pred ccEEEEE------eCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAV------DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIV------DDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|++| +|....-....+.+...|+++......++.++.| ...|+|++
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l-----------------------~~ad~I~v-- 85 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAI-----------------------ENAEAIFV-- 85 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHH-----------------------hcCCEEEE--
Confidence 4578887 3444445668888999999998888777777766 24678877
Q ss_pred CCCCCCHHHHHHHHhh
Q 026247 122 CMPGMTGYDLLKRLKV 137 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~ 137 (241)
+|.|-+.+++.++.
T Consensus 86 --~GGnt~~l~~~l~~ 99 (233)
T PRK05282 86 --GGGNTFQLLKQLYE 99 (233)
T ss_pred --CCccHHHHHHHHHH
Confidence 47777777777653
No 431
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=33.81 E-value=55 Score=21.81 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHhhc---CCCCCcEEEEecCCC
Q 026247 125 GMTGYDLLKRLKVS---SWKDVPVVVMSSENV 153 (241)
Q Consensus 125 ~~~G~el~~~lr~~---~~~~~pII~lsa~~~ 153 (241)
..+|+++++++... .....|||+.|.-+.
T Consensus 3 ~~sGv~vlRel~r~~~~~~~~~PVVFTS~Lg~ 34 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAAVMPVVFTSMLGV 34 (58)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCEEEeCCCCC
Confidence 35899999998654 345689987766543
No 432
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.81 E-value=95 Score=24.83 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=28.0
Q ss_pred cCCCccEEEEeCCCCCCCHH--------HHHHHHhhcCCCCCcEEEEecCC
Q 026247 110 EESRVNLIMTDYCMPGMTGY--------DLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~--------el~~~lr~~~~~~~pII~lsa~~ 152 (241)
....||+|++.+..-+.... .+++++|. ..+.+||++++...
T Consensus 54 ~~~~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~-~~p~~~iil~~~~~ 103 (177)
T cd01844 54 RDVPADLYIIDCGPNIVGAEAMVRERLGPLVKGLRE-THPDTPILLVSPRY 103 (177)
T ss_pred HhcCCCEEEEEeccCCCccHHHHHHHHHHHHHHHHH-HCcCCCEEEEecCC
Confidence 34579999998877665433 24455553 45788999888644
No 433
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=33.72 E-value=3.7e+02 Score=24.92 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=42.1
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhcCcEEEEEC---------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 49 FHVLAVDDSLI----DRKILENLLRVSSYQVTCVD---------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 49 ~~VLIVDDd~~----~~~~l~~~L~~~g~~V~~~~---------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
.++|||-|... ....+.+.|+..|..+..++ +..++.+.+ ....+|
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~---------------------~~~~~D 90 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLL---------------------KENNCD 90 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH---------------------HHcCCC
Confidence 48999988644 33467778887787665543 234455554 566899
Q ss_pred EEEEeCCCCCCCHHHHHHHHh
Q 026247 116 LIMTDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~lr 136 (241)
+||- +.|.+-++..|-+.
T Consensus 91 ~Iia---iGGGS~iD~AK~ia 108 (383)
T PRK09860 91 SVIS---LGGGSPHDCAKGIA 108 (383)
T ss_pred EEEE---eCCchHHHHHHHHH
Confidence 9874 45777777777664
No 434
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=33.43 E-value=3.9e+02 Score=24.59 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=40.5
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCcEEEEEC---------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 49 FHVLAVDDSLID----RKILENLLRVSSYQVTCVD---------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 49 ~~VLIVDDd~~~----~~~l~~~L~~~g~~V~~~~---------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
-|+|||-|.... ...+.+.|+..|..+..+. +..++.+.+ ....+|
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~---------------------~~~~~D 82 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLA---------------------KEGGCD 82 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHH---------------------HhcCCC
Confidence 379988876543 2457777877787766543 234444444 456789
Q ss_pred EEEEeCCCCCCCHHHHHHHHh
Q 026247 116 LIMTDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~lr 136 (241)
+||- ..|.+-+++.|.+.
T Consensus 83 ~IIa---iGGGS~~D~AKaia 100 (375)
T cd08194 83 VIIA---LGGGSPIDTAKAIA 100 (375)
T ss_pred EEEE---eCCchHHHHHHHHH
Confidence 8874 45666677776653
No 435
>PRK04148 hypothetical protein; Provisional
Probab=33.43 E-value=1.2e+02 Score=24.19 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=61.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+.+|+.|-== ....+...|...|++|+.++.-.++++.. .....+++.-|+--|.++
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a---------------------~~~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKA---------------------KKLGLNAFVDDLFNPNLE 73 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHH---------------------HHhCCeEEECcCCCCCHH
Confidence 3578888655 33334556777899999999888888877 345578999999888855
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCCh----HHHHHHHHcCCcceEeCCCChHH
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVP----SRVTMCLEEGAEEFLLKPVRLSD 177 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~----~~~~~a~~~Ga~dyL~KP~~~~~ 177 (241)
-++-+. ++++-.... ..+.-|.+.|++ ++.+|++-+.
T Consensus 74 ~y~~a~------------liysirpp~el~~~~~~la~~~~~~-~~i~~l~~e~ 114 (134)
T PRK04148 74 IYKNAK------------LIYSIRPPRDLQPFILELAKKINVP-LIIKPLSGEE 114 (134)
T ss_pred HHhcCC------------EEEEeCCCHHHHHHHHHHHHHcCCC-EEEEcCCCCC
Confidence 433211 234444333 334455677775 6778887654
No 436
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=33.35 E-value=1e+02 Score=21.66 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=34.8
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHH
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i 182 (241)
....+.+..+|+. +.-++.. .....+||+.+........ ..++..|++.+.|...+
T Consensus 25 ~~~~~~l~~vDI~----~d~~l~~----~Y~~~IPVl~~~~~~~~~~---------~~~~~~~~d~~~L~~~L 80 (81)
T PF05768_consen 25 AEFPFELEEVDID----EDPELFE----KYGYRIPVLHIDGIRQFKE---------QEELKWRFDEEQLRAWL 80 (81)
T ss_dssp TTSTCEEEEEETT----TTHHHHH----HSCTSTSEEEETT-GGGCT---------SEEEESSB-HHHHHHHH
T ss_pred hhcCceEEEEECC----CCHHHHH----HhcCCCCEEEEcCcccccc---------cceeCCCCCHHHHHHHh
Confidence 3556899999997 3333322 3346899998866322211 34677799998887765
No 437
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=33.23 E-value=3.2e+02 Score=23.62 Aligned_cols=51 Identities=16% Similarity=0.386 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC-CcceEe------CCCChHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG-AEEFLL------KPVRLSDLEKL 181 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G-a~dyL~------KP~~~~~L~~~ 181 (241)
+++++.++.. ..+|||+.-.-.+.+.+.++++.| +++.+. .-++..++...
T Consensus 188 ~~~~~~i~~~--~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~ 245 (254)
T TIGR00735 188 LELTKAVSEA--VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEY 245 (254)
T ss_pred HHHHHHHHHh--CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHH
Confidence 5788888743 468999888888999999999988 888543 34455554443
No 438
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=33.12 E-value=3.2e+02 Score=23.63 Aligned_cols=84 Identities=8% Similarity=-0.046 Sum_probs=51.8
Q ss_pred EEEEE--eCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 50 HVLAV--DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 50 ~VLIV--DDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+|.++ .........+...|...|..+....+.......+. .-..-|++|+ +...+.+
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~--------------------~~~~~Dv~I~-iS~sg~~ 188 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQ--------------------ALSPDDLLLA-ISYSGER 188 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHH--------------------hCCCCCEEEE-EcCCCCC
Confidence 45554 55666777788888888988887777665544442 1123454443 3444433
Q ss_pred --HHHHHHHHhhcCCCCCcEEEEecCCChHHH
Q 026247 128 --GYDLLKRLKVSSWKDVPVVVMSSENVPSRV 157 (241)
Q Consensus 128 --G~el~~~lr~~~~~~~pII~lsa~~~~~~~ 157 (241)
-.++++..|. ..++||++|+.......
T Consensus 189 ~~~~~~~~~ak~---~ga~iI~IT~~~~s~la 217 (278)
T PRK11557 189 RELNLAADEALR---VGAKVLAITGFTPNALQ 217 (278)
T ss_pred HHHHHHHHHHHH---cCCCEEEEcCCCCCchH
Confidence 3456666653 57899999997655554
No 439
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.83 E-value=1.3e+02 Score=25.38 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=29.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDK 83 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~e 83 (241)
+++|.|||----+...+.+.|+..|+ ++....+.++
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~ 38 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA 38 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH
Confidence 36899999888788888899999998 7777776655
No 440
>PLN02775 Probable dihydrodipicolinate reductase
Probab=32.57 E-value=3.3e+02 Score=24.60 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEE-ecCCChHHHHHHHH-cCCcceEeCCCChH
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVM-SSENVPSRVTMCLE-EGAEEFLLKPVRLS 176 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~l-sa~~~~~~~~~a~~-~Ga~dyL~KP~~~~ 176 (241)
...||+|++|...|..- .+.++.... ..+|+|+= |+.... ...+..+ .++--++.-.|+.-
T Consensus 77 ~~~~~~VvIDFT~P~a~-~~~~~~~~~---~g~~~VvGTTG~~~e-~l~~~~~~~~i~vv~apNfSiG 139 (286)
T PLN02775 77 AEYPNLIVVDYTLPDAV-NDNAELYCK---NGLPFVMGTTGGDRD-RLLKDVEESGVYAVIAPQMGKQ 139 (286)
T ss_pred ccCCCEEEEECCChHHH-HHHHHHHHH---CCCCEEEECCCCCHH-HHHHHHhcCCccEEEECcccHH
Confidence 34699999999999732 333343332 24565554 555444 3333333 35545566566554
No 441
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=32.46 E-value=1e+02 Score=27.06 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 60 DRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 60 ~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
.-..+.+.|++.|++|..+....+.+..+ ....+|+|+.=
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~---------------------~~~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQL---------------------KELGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHh---------------------ccCCCCEEEEe
Confidence 44667788888999998886666666666 34578998863
No 442
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=32.26 E-value=1.9e+02 Score=21.09 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=41.0
Q ss_pred HHHhhcCcEEEEEC-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCc
Q 026247 66 NLLRVSSYQVTCVD-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVP 144 (241)
Q Consensus 66 ~~L~~~g~~V~~~~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~p 144 (241)
.-|+-.|++...+. +.+++.+.+..+. .+..+.+|+++-.+-..-.-.+ ..++.. ...|
T Consensus 11 ~gFrLaGv~~~~~~~~~ee~~~~l~~l~-----------------~~~~~gIIii~e~~~~~~~~~l-~~~~~~--~~~P 70 (95)
T PF01990_consen 11 LGFRLAGVEGVYVNTDPEEAEEALKELL-----------------KDEDVGIIIITEDLAEKIRDEL-DEYREE--SSLP 70 (95)
T ss_dssp HHHHHTTSEEEEESHSHHHHHHHHHHHH-----------------HHTTEEEEEEEHHHHTTHHHHH-HHHHHT--SSSS
T ss_pred HHHHHcCCCCccCCCCHHHHHHHHHHHh-----------------cCCCccEEEeeHHHHHHHHHHH-HHHHhc--cCCc
Confidence 34666899999988 9888888875441 3567899999876655433333 333222 3567
Q ss_pred EEEEe
Q 026247 145 VVVMS 149 (241)
Q Consensus 145 II~ls 149 (241)
+|+.-
T Consensus 71 ~iv~I 75 (95)
T PF01990_consen 71 LIVEI 75 (95)
T ss_dssp EEEEE
T ss_pred eEEEc
Confidence 66553
No 443
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=32.17 E-value=1.6e+02 Score=26.17 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 131 LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.++.+|... +...+|.++.+. .+...++.+.|+|....-|++++.+..++..+
T Consensus 171 ~v~~~r~~~-~~~~~Igvev~s-~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 171 AVRRARAAA-PFTLKIEVEVET-LEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred HHHHHHHhC-CCCCeEEEEECC-HHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 456666432 323456677765 57788899999988889999999988877654
No 444
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=32.14 E-value=2.1e+02 Score=25.83 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=49.2
Q ss_pred CccEEEE-eCCCCCC-CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 113 RVNLIMT-DYCMPGM-TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 113 ~~DlVll-D~~mp~~-~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
-.|.|++ |-+..-. +--+++++.|. ..+.++.|-+ .-++.+...+|+++|+|=.+.-.++++++.+++..+
T Consensus 157 LsDavliKDNHia~~g~i~~Av~~aR~-~~~~~~kIEV-Evesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 157 LSDAVLIKDNHIAAAGSITEAVRRARA-AAPFTKKIEV-EVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred CcceEEehhhHHHHhccHHHHHHHHHH-hCCCCceEEE-EcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 3455554 4333222 33457777774 3456664444 335688999999999999999999999999998886
No 445
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=32.03 E-value=1.8e+02 Score=23.01 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecC
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~ 151 (241)
...||+||+|. ++... .....+.. .+..||++|..
T Consensus 89 ~~~~D~iiIDt--aG~~~-~~~~~~~~---Ad~~ivv~tpe 123 (148)
T cd03114 89 AAGFDVIIVET--VGVGQ-SEVDIASM---ADTTVVVMAPG 123 (148)
T ss_pred hcCCCEEEEEC--CccCh-hhhhHHHh---CCEEEEEECCC
Confidence 35799999999 66553 33344442 45567666665
No 446
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=31.99 E-value=1.7e+02 Score=24.96 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=34.4
Q ss_pred CCccEEEEeCCC-------CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHH--HHHHHcCCcc
Q 026247 112 SRVNLIMTDYCM-------PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV--TMCLEEGAEE 167 (241)
Q Consensus 112 ~~~DlVllD~~m-------p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~--~~a~~~Ga~d 167 (241)
..++++++|+.= |--...+++++++. ...++.++|+....... ......|...
T Consensus 6 ~~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~---~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIA---QGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred hcCCEEEEecccccccCCccCccHHHHHHHHHH---CCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 358899999832 22234678888884 36789999886544322 4456677764
No 447
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=31.95 E-value=4.2e+02 Score=24.57 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=52.0
Q ss_pred HHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC-CCCC-HHHHHHHHhhc-
Q 026247 63 ILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM-PGMT-GYDLLKRLKVS- 138 (241)
Q Consensus 63 ~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m-p~~~-G~el~~~lr~~- 138 (241)
.+.++-.++|.++. .+++.+|.-..+ .-...++|=++-+- -... -++...+|...
T Consensus 221 ~l~~~A~~LGme~LVEVH~~~ElerAl---------------------~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~ 279 (338)
T PLN02460 221 YMLKICKSLGMAALIEVHDEREMDRVL---------------------GIEGVELIGINNRSLETFEVDISNTKKLLEGE 279 (338)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCcceECHHHHHHHhhhc
Confidence 34444456898764 699999998777 21135666554432 2211 13444444420
Q ss_pred ---CC--CCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 139 ---SW--KDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 139 ---~~--~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.. .++-+|.-|+-...+++..+.++|++++|+=
T Consensus 280 ~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVG 317 (338)
T PLN02460 280 RGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVG 317 (338)
T ss_pred cccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 11 1222333366668899999999999999873
No 448
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.88 E-value=2.2e+02 Score=25.70 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.+.++.+|... +....|.+..+ +.+...+|.++|+|....-+++++++..++..+
T Consensus 183 ~~av~~~r~~~-~~~~~I~VEv~-tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 183 GEAITRIRQRI-PYPLTIEVETE-TLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred HHHHHHHHHhC-CCCCEEEEECC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 34556666432 32334555554 577888999999998889999999999988754
No 449
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=31.71 E-value=3.4e+02 Score=23.38 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=42.7
Q ss_pred ccEEEEeCCCC-----CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMP-----GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp-----~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++-..-+ +.-|..+++.+- ..+|+|+. .... ..+.+..|..+|+.++-+.+++.+.+..++..
T Consensus 256 adi~l~~s~~~~~~~~e~~~~~~~Ea~a----~G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 256 ADLFVLPSVTAADGDREGLPVVLMEAMA----MGLPVIST-DVSG---IPELVEDGETGLLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred CCEEEecceecCCCCccCccHHHHHHHH----cCCCEEec-CCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 56666533321 223555555544 46888753 3222 23456678789999999999999999988753
No 450
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=31.57 E-value=2.7e+02 Score=24.78 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=47.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcE--EEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQ--VTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~--V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+|.-.|-++.+.+...+-|+..|+. |+. ..|..+. . ....+|.|++|+-
T Consensus 121 ~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~---~---------------------~~~~vDav~LDmp---- 172 (256)
T COG2519 121 HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG---I---------------------DEEDVDAVFLDLP---- 172 (256)
T ss_pred eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc---c---------------------cccccCEEEEcCC----
Confidence 6777777777777777777766642 221 2222222 2 2348999999974
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
+-++++..+...-.+...+++++...
T Consensus 173 ~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 173 DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 34677777765545677888887764
No 451
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=31.56 E-value=1.7e+02 Score=26.94 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=37.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcc
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEE 167 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~d 167 (241)
+--|+|++= |.+.-+++++.+|. ..+++||.++--.+....+..|.+.|.-|
T Consensus 237 EGAD~lMVK---Pal~YLDIi~~~k~-~~~~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 237 EGADMIMVK---PGTPYLDIVREAKD-KHPDLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred hCCCEEEEc---CCchHHHHHHHHHH-hccCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 445677664 67777888999984 44689999997777677777777777654
No 452
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=31.42 E-value=3.3e+02 Score=25.37 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=39.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCC------cceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGA------EEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga------~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++-- .-+.-|+..++.+. ..+|+|+....+..+. +..|. ++|+..|.+.++|...+.+++.
T Consensus 371 aDv~l~pS-~~E~~gl~~lEAma----~G~pvI~~~~gg~~e~----v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 371 ADFFLMPS-RFEPCGLTQMYAMR----YGTVPIVRATGGLADT----VIDYNEDTGEGTGFVFEGYNADALLAALRRALA 441 (476)
T ss_pred CCEEECCC-CCCCCcHHHHHHhh----CCCCCEECcCCCccce----EeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 46666522 22344555555544 4567664322222222 23333 8999999999999999998874
No 453
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=31.17 E-value=2.7e+02 Score=23.04 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=37.6
Q ss_pred EEEeCCHHHHHHHHHHHhhcCcEEEE-------------------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCC
Q 026247 52 LAVDDSLIDRKILENLLRVSSYQVTC-------------------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEES 112 (241)
Q Consensus 52 LIVDDd~~~~~~l~~~L~~~g~~V~~-------------------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~ 112 (241)
+-+|+....++++..+ +..|..+.. -++.++-++.+. ...
T Consensus 54 ~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In--------------------~ig 112 (170)
T COG2061 54 FEGDREDKDAKIIRLL-EEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRIN--------------------SIG 112 (170)
T ss_pred EEecccHHHHHHHHHH-HhCCcEEEEecCcCcceeEeEEEEEeeecCcHHHHHHHhh--------------------ccC
Confidence 4445577777777666 666644332 247788888773 233
Q ss_pred CccEEEEeCCCCCCCHH
Q 026247 113 RVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~ 129 (241)
.-.++=+|+.||+.+|.
T Consensus 113 ~A~vvDl~L~Mp~~e~~ 129 (170)
T COG2061 113 GAEVVDLSLSMPGIEGE 129 (170)
T ss_pred CEEEEEEEeecCCCCCC
Confidence 34678889999998874
No 454
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=31.17 E-value=1.3e+02 Score=26.90 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
..++.++.....++|||....-.+.+++.+++.+||+..
T Consensus 231 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~V 269 (294)
T cd04741 231 GNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAV 269 (294)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCce
Confidence 444555543323699999999999999999999999865
No 455
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=31.10 E-value=4e+02 Score=24.21 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=54.9
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 50 HVLAVDDSLIDRKILENLLR----VSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~----~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.|||=|.|-...-.+.+.++ ..+. -.+.+.+.+++.+.+ +..+|+|++|-.-
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~----------------------~~gaDiI~LDn~s 238 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQAL----------------------KAGADIIMLDNFT 238 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHH----------------------HcCCCEEEeCCCC
Confidence 35555555443333334332 2222 334688999999988 3457999999644
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
| -++-+.++... . -.+|..|+--+.+.+.+..+.|+|-+
T Consensus 239 ~----e~~~~av~~~~-~-~~~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 239 T----EQMREAVKRTN-G-RALLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred h----HHHHHHHHhhc-C-CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4 33333333111 2 23566777788888999999999743
No 456
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=31.07 E-value=2.8e+02 Score=22.92 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=9.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEec
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa 150 (241)
|..+++.+.... ...|.+++.
T Consensus 103 g~~~~~~l~~~g--~~~i~~l~~ 123 (267)
T cd06284 103 ARLAVDHLISLG--HRRIALITG 123 (267)
T ss_pred HHHHHHHHHHcC--CceEEEEcC
Confidence 444555554332 234555544
No 457
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=31.05 E-value=3.8e+02 Score=23.77 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=43.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCCh------HHHHHHHHHHh
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRL------SDLEKLQPRLL 186 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~------~~L~~~i~~~l 186 (241)
..|++++=.. .+.-|..+++.+- ..+|||+. ..+. ..+.+..|.++++.++-+. ++|.+.+..++
T Consensus 280 ~aDv~v~ps~-~e~~g~~~lEA~a----~G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~ 350 (388)
T TIGR02149 280 NAEVFVCPSI-YEPLGIVNLEAMA----CGTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILL 350 (388)
T ss_pred hCCEEEeCCc-cCCCChHHHHHHH----cCCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHH
Confidence 3577665322 2344666665554 46788753 3322 3445667888999999888 88999998887
Q ss_pred cC
Q 026247 187 KS 188 (241)
Q Consensus 187 ~~ 188 (241)
..
T Consensus 351 ~~ 352 (388)
T TIGR02149 351 AD 352 (388)
T ss_pred hC
Confidence 53
No 458
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=31.02 E-value=2.9e+02 Score=24.74 Aligned_cols=86 Identities=15% Similarity=0.304 Sum_probs=54.0
Q ss_pred ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC--CC---C--CCCHHHHHHHHhhcCCCCCcEEEEec
Q 026247 78 VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY--CM---P--GMTGYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 78 ~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~--~m---p--~~~G~el~~~lr~~~~~~~pII~lsa 150 (241)
+++.++|.+.. .....|.+-+-+ -- | ..=|++.+++|+.. ..+|+|++-+
T Consensus 152 ~t~~eea~~f~---------------------~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~--~~iPlV~hG~ 208 (281)
T PRK06806 152 LTSTTEAKRFA---------------------EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV--VHIPLVLHGG 208 (281)
T ss_pred eCCHHHHHHHH---------------------HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh--cCCCEEEECC
Confidence 56777777776 334567766622 11 1 12478999999853 3689998864
Q ss_pred CC-ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 151 EN-VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 151 ~~-~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+ ..+...++++.|++.+=.=-.-.......+++++
T Consensus 209 SGI~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~ 245 (281)
T PRK06806 209 SGISPEDFKKCIQHGIRKINVATATFNSVITAVNNLV 245 (281)
T ss_pred CCCCHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHH
Confidence 43 5778889999999877332221224455555555
No 459
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=31.01 E-value=2.5e+02 Score=23.81 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=27.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGD 82 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~ 82 (241)
++|.|+|=.--+...+.+.|+..|+++....+.+
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~ 35 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSES 35 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHH
Confidence 5799999876666778888998999998887753
No 460
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=30.99 E-value=1.3e+02 Score=27.96 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=39.3
Q ss_pred CCCccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 111 ESRVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+...|+|++|..--... -++.+++||. .++++||| .-.-...+.....+++|||...+=
T Consensus 118 ~agvD~ivID~a~g~s~~~~~~ik~ik~-~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 118 EAGVDVIVIDSAHGHSEHVIDMIKKIKK-KFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HTT-SEEEEE-SSTTSHHHHHHHHHHHH-HSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HcCCCEEEccccCccHHHHHHHHHHHHH-hCCCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 45689999997653322 4578888885 45677776 445567788888999999877654
No 461
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.96 E-value=2.3e+02 Score=25.46 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.+.++++|.......+|.+=.. +.+...+++++|+|-.+.-.++++++.+++..+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~--tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVD--TLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 3566777744322455655443 577888999999999999999999999998854
No 462
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.84 E-value=2.1e+02 Score=25.83 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.+.++++|.. .+..+|.+=. .+.+...+++++|+|-.+.-.++++++.+++..+
T Consensus 187 ~~ai~~~r~~-~~~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~ 240 (289)
T PRK07896 187 VAALRAVRAA-APDLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRR 240 (289)
T ss_pred HHHHHHHHHh-CCCCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 4667777743 4566765544 4567888999999999999999999999998854
No 463
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.59 E-value=2e+02 Score=25.40 Aligned_cols=59 Identities=15% Similarity=0.305 Sum_probs=34.8
Q ss_pred CCCccEEEEe-----CCCC-----CCCHHHHHHHHhhcCCCCCcEEE-EecCCCh------HHHHHHHHcCCcce-EeCC
Q 026247 111 ESRVNLIMTD-----YCMP-----GMTGYDLLKRLKVSSWKDVPVVV-MSSENVP------SRVTMCLEEGAEEF-LLKP 172 (241)
Q Consensus 111 ~~~~DlVllD-----~~mp-----~~~G~el~~~lr~~~~~~~pII~-lsa~~~~------~~~~~a~~~Ga~dy-L~KP 172 (241)
....+++|+. +..+ ++.++ ..+|.. ..+|||+ .| |... .....|...||++. |-|-
T Consensus 148 ~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai---~~lk~~--~~lPVivd~S-Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 148 TGKSNIILCERGVRGYDVETRNMLDIMAV---PIIQQK--TDLPIIVDVS-HSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred cCCCeEEEEccccCCCCCccccccCHHHH---HHHHHH--hCCCeEECCC-CCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 3456899987 2222 23333 344422 2589888 56 6544 56777899999876 4554
Q ss_pred CCh
Q 026247 173 VRL 175 (241)
Q Consensus 173 ~~~ 175 (241)
+++
T Consensus 222 ~~P 224 (250)
T PRK13397 222 PDP 224 (250)
T ss_pred CCc
Confidence 444
No 464
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=30.55 E-value=3.3e+02 Score=22.91 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=41.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++-... +.-|..+++.+- ..+|||+ |.... ..+.+..|..+++..+.+.+++.+.+..++..
T Consensus 264 adi~i~ps~~-e~~~~~~~Ea~~----~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 264 ADVFVLPSYR-EGLPRVLLEAMA----MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred ccEEEecCcc-cCcchHHHHHHH----cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 4555543322 233555665554 4678875 33322 23345567888999999999999999987743
No 465
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=30.51 E-value=3.8e+02 Score=23.56 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=45.6
Q ss_pred cEEEEEe-CCH---HHHHHHHHHHhhcCcEEEE---E----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 49 FHVLAVD-DSL---IDRKILENLLRVSSYQVTC---V----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 49 ~~VLIVD-Dd~---~~~~~l~~~L~~~g~~V~~---~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.+|.++- |+. .....+...++..|++|+. + .+....+..+ ....||+|
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l---------------------~~~~pd~v 191 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERI---------------------AASGADAV 191 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHH---------------------HHcCCCEE
Confidence 3565554 333 2345667778888988752 2 2333444444 45679999
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEec
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~~~~~pII~lsa 150 (241)
++...- .+...+++.++.... ..+++..+.
T Consensus 192 ~~~~~~--~~~~~~~~~~~~~G~-~~~~~~~~~ 221 (333)
T cd06358 192 LSTLVG--QDAVAFNRQFAAAGL-RDRILRLSP 221 (333)
T ss_pred EEeCCC--CchHHHHHHHHHcCC-CccCceeec
Confidence 987533 345678888875433 335554443
No 466
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=30.41 E-value=3.6e+02 Score=23.35 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=55.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-----
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC----- 122 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~----- 122 (241)
..+|..+|-++......+.-+...|..+.. .+..+.+... ....||+|++|-=
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~---------------------~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTA---------------------LRGRVDILAANAPYVPTD 167 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchh---------------------cCCCEeEEEECCCCCCch
Confidence 457999999998888888777766654433 3333222111 1246999999841
Q ss_pred ------------------CCCCCHHHHHHHHhh----cCCCCCcEEEEecCCChHHHHHHH-HcCCc
Q 026247 123 ------------------MPGMTGYDLLKRLKV----SSWKDVPVVVMSSENVPSRVTMCL-EEGAE 166 (241)
Q Consensus 123 ------------------mp~~~G~el~~~lr~----~~~~~~pII~lsa~~~~~~~~~a~-~~Ga~ 166 (241)
..+.+|+++.+.+-. .-.+.-.+++.+.......+...+ +.|..
T Consensus 168 ~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 168 AIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLI 234 (251)
T ss_pred hhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCC
Confidence 123567766666532 122344455556655555554444 33443
No 467
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=30.40 E-value=4.4e+02 Score=24.39 Aligned_cols=90 Identities=20% Similarity=0.267 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC----C-CCCCHHHHHHH
Q 026247 62 KILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC----M-PGMTGYDLLKR 134 (241)
Q Consensus 62 ~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~----m-p~~~G~el~~~ 134 (241)
+.+..+-+..+. -+-.+.+.++|.... +...|.|++.-+ + .+...++.+..
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~----------------------~~G~d~I~vsnhGGr~ld~~~~~~~~l~~ 268 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAI----------------------NAGADGIWVSNHGGRQLDGGPASFDSLPE 268 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHH----------------------HcCCCEEEEeCCCCccCCCCchHHHHHHH
Confidence 334443333343 333456778886665 345777777421 0 11224566677
Q ss_pred HhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-CCC
Q 026247 135 LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-KPV 173 (241)
Q Consensus 135 lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-KP~ 173 (241)
++......+|||+-.+-....++.+++..||+.... .|+
T Consensus 269 i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 269 IAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 764433469999999999999999999999997744 344
No 468
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=30.32 E-value=3e+02 Score=22.46 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=38.5
Q ss_pred CHHHHHHHHhhcCCCCCcE-EEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 127 TGYDLLKRLKVSSWKDVPV-VVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pI-I~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
-|++.++.|+.. ...|+ +-+..++....+..+.+.|+++.+.-....++....++.+
T Consensus 43 ~~~~~v~~i~~~--~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~ 100 (210)
T TIGR01163 43 FGPPVLEALRKY--TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLI 100 (210)
T ss_pred cCHHHHHHHHhc--CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHH
Confidence 588899999843 45565 3244445567788889999999877655455555555444
No 469
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=30.31 E-value=2.4e+02 Score=23.99 Aligned_cols=93 Identities=26% Similarity=0.328 Sum_probs=59.1
Q ss_pred eCCHHHHHHHHHHHhh-cCcEEEE------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-CC
Q 026247 55 DDSLIDRKILENLLRV-SSYQVTC------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-GM 126 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~-~g~~V~~------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~~ 126 (241)
+|..+....+++++.. .|+.++. +.+..+|++.| .+..++-||+.=.-+ -.
T Consensus 96 ~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L---------------------~~lG~~rVLTSGg~~~a~ 154 (201)
T PF03932_consen 96 EDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQL---------------------IELGFDRVLTSGGAPTAL 154 (201)
T ss_dssp TTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHH---------------------HHHT-SEEEESTTSSSTT
T ss_pred CCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHH---------------------HhcCCCEEECCCCCCCHH
Confidence 5777788888888874 3677764 56888899988 344799999986654 36
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHH-cCCcceE
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLE-EGAEEFL 169 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~-~Ga~dyL 169 (241)
+|++.++.+.......+- |+.-+-...+.+....+ .|+..|-
T Consensus 155 ~g~~~L~~lv~~a~~~i~-Im~GgGv~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 155 EGIENLKELVEQAKGRIE-IMPGGGVRAENVPELVEETGVREIH 197 (201)
T ss_dssp TCHHHHHHHHHHHTTSSE-EEEESS--TTTHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHcCCCcE-EEecCCCCHHHHHHHHHhhCCeEEe
Confidence 899999988654322332 44444445555555555 7887664
No 470
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.30 E-value=4.2e+02 Score=24.04 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=17.6
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHhhcCcEEEEE
Q 026247 47 ETFHVLAVDDSLIDR---KILENLLRVSSYQVTCV 78 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~---~~l~~~L~~~g~~V~~~ 78 (241)
.+.+|+|++-|.... ..+...-...|..+...
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 356899998776332 23333444456555443
No 471
>PLN02275 transferase, transferring glycosyl groups
Probab=30.21 E-value=4.2e+02 Score=23.98 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=63.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE-EEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC-
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY- 121 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~- 121 (241)
..++.+|+.|-+. +..+++..+..|.. ++... ..++.-+++. ..|+.++=.
T Consensus 260 ~~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~-----------------------~aDv~v~~~~ 315 (371)
T PLN02275 260 PRLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLG-----------------------SADLGVSLHT 315 (371)
T ss_pred CCeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHH-----------------------hCCEEEEecc
Confidence 4688899987664 56677777777753 44432 3456656552 357766410
Q ss_pred CC-CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 122 CM-PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 122 ~m-p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.. ...-|..+++.+- ..+|||+. ..+. ..+.++.|.++|+.. +.++|.+.+.+++
T Consensus 316 s~~~e~~p~~llEAmA----~G~PVVa~-~~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 316 SSSGLDLPMKVVDMFG----CGLPVCAV-SYSC---IGELVKDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred ccccccccHHHHHHHH----CCCCEEEe-cCCC---hHHHccCCCCeEEEC--CHHHHHHHHHHhC
Confidence 11 0111344555443 57899874 3322 345667899999986 5788888776653
No 472
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.20 E-value=2.8e+02 Score=22.07 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCCccEEEEeCCCCCCC----H-------HHHHHHHhhcCCCCCcEEEEecC
Q 026247 111 ESRVNLIMTDYCMPGMT----G-------YDLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~----G-------~el~~~lr~~~~~~~pII~lsa~ 151 (241)
...||+|++-+..-+.. . .++++.++. ..+.++|++++..
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~-~~~~~~iiv~~~p 115 (191)
T cd01836 65 ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRA-KFPGARVVVTAVP 115 (191)
T ss_pred cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHh-hCCCCEEEEECCC
Confidence 56899999944433321 1 135555553 3478888887753
No 473
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.15 E-value=1.3e+02 Score=29.44 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=34.9
Q ss_pred CCccEEEEEeCCHHHH-------HHHHHH---------HhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccc
Q 026247 46 QETFHVLAVDDSLIDR-------KILENL---------LRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKK 109 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~-------~~l~~~---------L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~ 109 (241)
+.+++|||+-=|.+.. ...+++ |-..||.=..+.-+.+|+++.
T Consensus 404 qNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a--------------------- 462 (587)
T KOG0781|consen 404 QNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEA--------------------- 462 (587)
T ss_pred hCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHH---------------------
Confidence 4678999997666532 222222 011345444555567777776
Q ss_pred cCCCccEEEEeCC
Q 026247 110 EESRVNLIMTDYC 122 (241)
Q Consensus 110 ~~~~~DlVllD~~ 122 (241)
.+..||+||+|.-
T Consensus 463 ~~~gfDVvLiDTA 475 (587)
T KOG0781|consen 463 RNQGFDVVLIDTA 475 (587)
T ss_pred HhcCCCEEEEecc
Confidence 6778999999983
No 474
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=30.04 E-value=3.4e+02 Score=22.94 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=39.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++-... +.-|..+++.+- ..+|+|+ +..... .+.+.. .+++.++-+.+++...+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a----~g~PvI~-~~~~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA----CGLPVVA-TDVGDN---AELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh----cCCCEEE-cCCCCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 5666664433 333555666554 4678875 333222 222222 67899999999999999998853
No 475
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=29.95 E-value=2.1e+02 Score=26.00 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.+.++++|. ..+..+|.+=.. +.+...+++++|+|-.+.-.++++++..++..+
T Consensus 196 ~~av~~~r~-~~~~~kIeVEv~--sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 196 RQAVEKAFW-LHPDVPVEVEVE--NLDELDQALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred HHHHHHHHH-hCCCCCEEEEeC--CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 356666663 335667554443 488899999999999999999999999998854
No 476
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.51 E-value=3.3e+02 Score=22.59 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
|..+++.+... ....|.++++..
T Consensus 110 g~~~~~~l~~~--g~~~i~~i~~~~ 132 (270)
T cd06294 110 GYDATEYLIKL--GHKKIAFVGGDL 132 (270)
T ss_pred HHHHHHHHHHc--CCccEEEecCCc
Confidence 34555555532 345677776543
No 477
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.35 E-value=3.6e+02 Score=23.35 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCC--CccEEEEeCCCCCCCHHHHHHHHh
Q 026247 62 KILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEES--RVNLIMTDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DlVllD~~mp~~~G~el~~~lr 136 (241)
..++..++..||.+..+. +.+.-.+.++.+ ... .+|-||+-- .. ...-+.++.++
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~------------------~~~~~~vdgiIi~~-~~-~~~~~~~~~~~ 79 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTI------------------LQRPDKPDALIFTN-EK-SVAPELLRLAE 79 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHH------------------HHhccCCCEEEEcC-Cc-cchHHHHHHHH
Confidence 346666777899876543 222222222111 345 789888731 11 12334455555
Q ss_pred hcCCCCCcEEEEec
Q 026247 137 VSSWKDVPVVVMSS 150 (241)
Q Consensus 137 ~~~~~~~pII~lsa 150 (241)
. ..+|||++-.
T Consensus 80 ~---~giPvV~~~~ 90 (305)
T cd06324 80 G---AGVKLFLVNS 90 (305)
T ss_pred h---CCCeEEEEec
Confidence 2 4678888754
No 478
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=29.31 E-value=4.3e+02 Score=23.89 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=57.2
Q ss_pred EEeCCHHHHHHHHHHHhhcCcEEEE------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC-C-
Q 026247 53 AVDDSLIDRKILENLLRVSSYQVTC------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM-P- 124 (241)
Q Consensus 53 IVDDd~~~~~~l~~~L~~~g~~V~~------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m-p- 124 (241)
+..|.....+++..+-...++.|.. -.+..+.++++..+ .+...|.|.+.-.. +
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~l------------------e~~G~d~i~vh~rt~~~ 175 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLA------------------EDCGIQALTIHGRTRAC 175 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHH------------------HHhCCCEEEEecCcccc
Confidence 4556666777777766554443332 12222333333211 33446766554332 1
Q ss_pred ---CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHH-cCCcceE
Q 026247 125 ---GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLE-EGAEEFL 169 (241)
Q Consensus 125 ---~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~-~Ga~dyL 169 (241)
+.-.++.+++++.. ..+|||..-.-.+.++..++++ .|+++..
T Consensus 176 ~~~G~a~~~~i~~ik~~--~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 176 LFNGEAEYDSIRAVKQK--VSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred ccCCCcChHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 11237888888753 4689988877778889999997 6888763
No 479
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.30 E-value=3.4e+02 Score=24.58 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHHHHh---hcC--cEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 50 HVLAVDDSLIDRKILENLLR---VSS--YQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~---~~g--~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.|||=|.|-...-.+.+.++ ... ..+ +.+.+.+++.+.+ ...+|+|++|-.-
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~----------------------~aGaDiImLDnms 235 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETAL----------------------AHGAQSVLLDNFT 235 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHH----------------------HcCCCEEEECCCC
Confidence 46666666554433333332 221 223 4588999999987 3568999999543
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
| -++.+.++.. +.-.++-.|+--..+.+.+....|+| ||
T Consensus 236 p----e~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~tGVD-~I 274 (294)
T PRK06978 236 L----DMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAETGVD-RI 274 (294)
T ss_pred H----HHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhcCCC-EE
Confidence 3 3333333311 12346677888888999989999997 44
No 480
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=29.26 E-value=4.7e+02 Score=24.44 Aligned_cols=69 Identities=9% Similarity=0.052 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc-EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY-QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~-~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+|+-||-++......+.-+...|+ .+. ...+..+.+..+.. ....||+|++|--=.++
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~-------------------~~~~~D~vi~dPPr~G~ 375 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW-------------------AGQIPDVLLLDPPRKGC 375 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-------------------cCCCCCEEEECcCCCCC
Confidence 3789999999888888887776665 343 35666665433200 23468999998532121
Q ss_pred CHHHHHHHHhh
Q 026247 127 TGYDLLKRLKV 137 (241)
Q Consensus 127 ~G~el~~~lr~ 137 (241)
..++++.+..
T Consensus 376 -~~~~l~~l~~ 385 (431)
T TIGR00479 376 -AAEVLRTIIE 385 (431)
T ss_pred -CHHHHHHHHh
Confidence 2566676663
No 481
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.13 E-value=3.7e+02 Score=23.06 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=40.2
Q ss_pred cc-EEEEeCC-CC-C-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 114 VN-LIMTDYC-MP-G-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 114 ~D-lVllD~~-mp-~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++ ++++|+. +- + ..-+++++++... ..+||.+=-+-.+.+++.+++..|++..+.-
T Consensus 43 ~~~l~ivDldga~~g~~~n~~~i~~i~~~--~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 43 VDKIHVVDLDGAFEGKPKNLDVVKNIIRE--TGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCEEEEEECcchhcCCcchHHHHHHHHhh--CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 44 7778876 32 2 1357888888643 5688887666667889999999999987763
No 482
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=29.12 E-value=3.9e+02 Score=23.34 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=40.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecC---CChHHHHHHHHcCCcceEeCCCC--hHHHHHHHHHHhc
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSE---NVPSRVTMCLEEGAEEFLLKPVR--LSDLEKLQPRLLK 187 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~---~~~~~~~~a~~~Ga~dyL~KP~~--~~~L~~~i~~~l~ 187 (241)
..|++++. .+ +..+++.+. ..+|+|++... .......+.+..+-.+++..+-+ .++|.+.+.+++.
T Consensus 250 ~ad~~v~~---~g--~~~l~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 250 AADLVISR---AG--ASTVAELAA----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hCCEEEEC---CC--hhHHHHHHH----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 45777762 11 344555554 47898876321 11122233455666788876654 8999999999885
Q ss_pred C
Q 026247 188 S 188 (241)
Q Consensus 188 ~ 188 (241)
.
T Consensus 321 ~ 321 (348)
T TIGR01133 321 D 321 (348)
T ss_pred C
Confidence 3
No 483
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.10 E-value=3.5e+02 Score=26.35 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred CccEEEEEeCCHHH----HHHHHHHHhhcC--cEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE-
Q 026247 47 ETFHVLAVDDSLID----RKILENLLRVSS--YQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI- 117 (241)
Q Consensus 47 ~~~~VLIVDDd~~~----~~~l~~~L~~~g--~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV- 117 (241)
.+..+++||..+-. ...++.+=..++ ..|.. +.+.+.|.+++ +.-.|.|
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li----------------------~aGAd~I~ 310 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA----------------------EAGADFVK 310 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHH----------------------HcCCCEEE
Q ss_pred -------------EEeCCCCCCCHHHHHHHHhhcC----CCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 118 -------------MTDYCMPGMTGYDLLKRLKVSS----WKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 118 -------------llD~~mp~~~G~el~~~lr~~~----~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.++...|..+.+.-+....... ...+|||+-.+--...++.+|+.+||+....
T Consensus 311 vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~ 380 (502)
T PRK07107 311 VGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIML 380 (502)
T ss_pred ECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeee
No 484
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=28.96 E-value=3.3e+02 Score=22.46 Aligned_cols=6 Identities=17% Similarity=0.634 Sum_probs=2.4
Q ss_pred hcCcEE
Q 026247 70 VSSYQV 75 (241)
Q Consensus 70 ~~g~~V 75 (241)
..||.+
T Consensus 27 ~~g~~~ 32 (266)
T cd06282 27 AAGYSL 32 (266)
T ss_pred HCCCEE
Confidence 344443
No 485
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=28.91 E-value=4.7e+02 Score=24.15 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=52.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc-EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY-QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~-~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+|+-||-++...+..+.-++..|. .+. ...+..+.+... ...||+|++| |-.
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~----------------------~~~~D~vi~D---PPr 310 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ----------------------MSAPELVLVN---PPR 310 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc----------------------CCCCCEEEEC---CCC
Confidence 4688888888877777777766665 233 344554443211 2349999999 444
Q ss_pred CHH--HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 127 TGY--DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 127 ~G~--el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.|. ++++.|... .+ .-|++.++........+... .+|-.+
T Consensus 311 ~G~~~~~l~~l~~~-~p--~~ivyvsc~p~TlaRDl~~L--~gy~l~ 352 (374)
T TIGR02085 311 RGIGKELCDYLSQM-AP--KFILYSSCNAQTMAKDIAEL--SGYQIE 352 (374)
T ss_pred CCCcHHHHHHHHhc-CC--CeEEEEEeCHHHHHHHHHHh--cCceEE
Confidence 453 566666532 12 24555555545555555444 356443
No 486
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=28.72 E-value=3.4e+02 Score=22.49 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=8.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEe
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~ls 149 (241)
|..+++.|... ..-.|.+++
T Consensus 104 ~~~~~~~l~~~--g~~~i~~l~ 123 (268)
T cd06298 104 AFEATELLIKN--GHKKIAFIS 123 (268)
T ss_pred HHHHHHHHHHc--CCceEEEEe
Confidence 34444445432 223444454
No 487
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=28.62 E-value=88 Score=25.71 Aligned_cols=61 Identities=7% Similarity=0.092 Sum_probs=37.0
Q ss_pred CCCccEEEEeCCCCCCCHH-HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 111 ESRVNLIMTDYCMPGMTGY-DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~-el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
...+|+||+|-=--.-+-. ..++.+|....+..+||.+|+......+.+.++.-..+|-++
T Consensus 84 ~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll~~~~~~f~p~ 145 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLLGLRMCDFQPE 145 (162)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHhCeeEEeEEec
Confidence 4579999999533111111 122333322335678999999888888888885555555443
No 488
>PLN02778 3,5-epimerase/4-reductase
Probab=28.58 E-value=2.4e+02 Score=24.84 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=28.5
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEE
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTC 77 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~ 77 (241)
+...++|||.--.-.+...+...|...|++|+.
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 344579999999999999999999889998864
No 489
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.50 E-value=5.3e+02 Score=24.63 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=58.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE-EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ-VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
-.+|.=||=.+..-...+.-.+..|.. +. .+.+.++...... ....||.||+| |-
T Consensus 315 ~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--------------------~~~~~d~VvvD---PP 371 (432)
T COG2265 315 VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--------------------EGYKPDVVVVD---PP 371 (432)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--------------------ccCCCCEEEEC---CC
Confidence 347888888888888877777777754 54 4577777765541 34579999999 44
Q ss_pred CCHH--HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 126 MTGY--DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 126 ~~G~--el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
..|. ++++.|... ..+-|++.|..-......+...--.+|
T Consensus 372 R~G~~~~~lk~l~~~---~p~~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 372 RAGADREVLKQLAKL---KPKRIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred CCCCCHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhCCe
Confidence 4554 467777532 223345555554444444444444445
No 490
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=28.46 E-value=4.7e+02 Score=24.09 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++.+++++.. -..|||+=.. ...++...+.++|++.+++-
T Consensus 202 ~~~i~~l~~~--~~~PvivKgv-~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 202 WDDIKWLRKH--TKLPIVLKGV-QTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred HHHHHHHHHh--cCCcEEEEcC-CCHHHHHHHHHcCCCEEEEE
Confidence 3556777632 3678876644 56888999999999987753
No 491
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=28.46 E-value=3.4e+02 Score=22.42 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhc
Q 026247 176 SDLEKLQPRLLK 187 (241)
Q Consensus 176 ~~L~~~i~~~l~ 187 (241)
+.-...+.+++.
T Consensus 162 ~~~~~~~~~~l~ 173 (268)
T cd01575 162 ALGRELLAELLA 173 (268)
T ss_pred HHHHHHHHHHHh
Confidence 344455555553
No 492
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=28.41 E-value=1.3e+02 Score=26.82 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=39.1
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~ 174 (241)
....||++|+=---|..-|-.-++.+-.. .++|.|++|....... ..+++..-.+||.-+.+
T Consensus 56 ~~~~pdf~I~isPN~~~PGP~~ARE~l~~--~~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 56 KEWDPDFVIVISPNAAAPGPTKAREMLSA--KGIPCIVISDAPTKKA-KDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHH--SEEEEE-S-TTSHHHHHHHHHHHH--SSS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS
T ss_pred HhhCCCEEEEECCCCCCCCcHHHHHHHHh--CCCCEEEEcCCCchhh-HHHHHhcCCcEEEEecC
Confidence 35679999988777788888877776533 5799999998766664 45566555677655443
No 493
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=28.37 E-value=2.7e+02 Score=22.27 Aligned_cols=56 Identities=23% Similarity=0.452 Sum_probs=34.4
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcC-CCCCcEE-EEecCCC-hHHHHHHHHcCCcceEeC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSS-WKDVPVV-VMSSENV-PSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~-~~~~pII-~lsa~~~-~~~~~~a~~~Ga~dyL~K 171 (241)
.+.+||+||+=.-+|..=. +..+|... .+.+|++ ++|.++. -. .-+.-|+|.|++-
T Consensus 86 ~~~~PD~IIsThp~~~~~~---l~~lk~~~~~~~~p~~tvvTD~~~~H~---~W~~~~~D~y~Va 144 (169)
T PF06925_consen 86 REFQPDLIISTHPFPAQVP---LSRLKRRGRLPNIPVVTVVTDFDTVHP---FWIHPGVDRYFVA 144 (169)
T ss_pred hhcCCCEEEECCcchhhhH---HHHHHHhhcccCCcEEEEEcCCCCCCc---CeecCCCCEEEEC
Confidence 5678999999887764221 34444332 3468865 6676632 21 2356788888874
No 494
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.26 E-value=3.9e+02 Score=23.00 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=45.4
Q ss_pred CCCcc-EEEEeCCC-CCCC--HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc-CCcceEe------CCCChHHHH
Q 026247 111 ESRVN-LIMTDYCM-PGMT--GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE-GAEEFLL------KPVRLSDLE 179 (241)
Q Consensus 111 ~~~~D-lVllD~~m-p~~~--G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~-Ga~dyL~------KP~~~~~L~ 179 (241)
...++ +++.|+.- ..+. -+++++.++.. ..+|||+--.-.+.++..++++. |+++.+. .-++..++.
T Consensus 164 ~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~--~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~ 241 (253)
T PRK02083 164 ELGAGEILLTSMDRDGTKNGYDLELTRAVSDA--VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELK 241 (253)
T ss_pred HcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh--CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHH
Confidence 34455 56756542 1122 26677777743 36899988888888999999875 9988766 345555555
Q ss_pred HHH
Q 026247 180 KLQ 182 (241)
Q Consensus 180 ~~i 182 (241)
..+
T Consensus 242 ~~~ 244 (253)
T PRK02083 242 AYL 244 (253)
T ss_pred HHH
Confidence 444
No 495
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=28.25 E-value=63 Score=24.47 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=38.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCC--hHHHHHHHHHHh
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR--LSDLEKLQPRLL 186 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~--~~~L~~~i~~~l 186 (241)
..+|++-. .+|... +.+- ...|.+||+++|.... -...-++-.|+.-++.++.. .+++.......+
T Consensus 17 ak~Ivv~T----~sG~ta-~~is-k~RP~~pIiavt~~~~-~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~ 84 (117)
T PF02887_consen 17 AKAIVVFT----ESGRTA-RLIS-KYRPKVPIIAVTPNES-VARQLSLYWGVYPVLIEEFDKDTEELIAEALEYA 84 (117)
T ss_dssp ESEEEEE-----SSSHHH-HHHH-HT-TSSEEEEEESSHH-HHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHH
T ss_pred CCEEEEEC----CCchHH-HHHH-hhCCCCeEEEEcCcHH-HHhhhhcccceEEEEeccccccHHHHHHHHHHHH
Confidence 45666543 355543 3332 2337899999998643 23333478899998777665 555555444444
No 496
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=28.14 E-value=2e+02 Score=25.73 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=47.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEEC---CHHHHHH--HHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSY--QVTCVD---SGDKALE--YLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~---~~~eal~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
.+.-||+.||.|+.....-+.+|....- ....-. +....++ .++. .-.-+.++-+++
T Consensus 93 ~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~----------------~lD~~rPVavll 156 (267)
T PF04672_consen 93 APDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG----------------LLDFDRPVAVLL 156 (267)
T ss_dssp -TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC----------------C--TTS--EEEE
T ss_pred CCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh----------------cCCCCCCeeeee
Confidence 4467999999999999999999976543 333333 4444444 2211 112345566777
Q ss_pred EeC--CCCC-CCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 119 TDY--CMPG-MTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 119 lD~--~mp~-~~G~el~~~lr~~~~~~~pII~ls 149 (241)
+.+ .+++ -+...+++.++.. .+.--.+++|
T Consensus 157 ~~vLh~v~D~~dp~~iv~~l~d~-lapGS~L~is 189 (267)
T PF04672_consen 157 VAVLHFVPDDDDPAGIVARLRDA-LAPGSYLAIS 189 (267)
T ss_dssp CT-GGGS-CGCTHHHHHHHHHCC-S-TT-EEEEE
T ss_pred eeeeccCCCccCHHHHHHHHHHh-CCCCceEEEE
Confidence 766 3455 6778889998843 2333344454
No 497
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=27.98 E-value=5.7e+02 Score=24.89 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-+..+..+... ..+|||+=..-....++.+|+.+||+....
T Consensus 339 ~i~~~~~~~~~--~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 339 AVYKVASIAAQ--HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHHHHHh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34445555422 368999999999999999999999997754
No 498
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.89 E-value=4.4e+02 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.6
Q ss_pred CcceEeCCCChHHHHHHHHHHhcC
Q 026247 165 AEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 165 a~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+.+++.+..+.+.|...+..++..
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhcC
Confidence 456788889999999999988854
No 499
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=27.87 E-value=3.7e+02 Score=22.59 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-+++++++. ...++.+.|- .+.+...++++.|++++++
T Consensus 190 ~~~i~~~~~---~g~~v~~Wtv-n~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 190 EEVVEELKK---RGIPVRLWTV-NEEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred HHHHHHHHH---CCCEEEEEec-CCHHHHHHHHHCCCCEEeC
Confidence 355666653 3567887876 4578888999999998876
No 500
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=27.86 E-value=2.6e+02 Score=20.84 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=41.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
++|.|+-|..... -|+-.|+. +..+.+.+++.+.++.+. .+..+.+|+++-.
T Consensus 1 mkIaVIgD~dtv~-----GFrLaGi~~~~~v~~~ee~~~~l~~l~-----------------~~~d~gII~ite~----- 53 (100)
T PRK03957 1 MKIAVVGDRDTVT-----GFRLAGLTEVYEVKNPEEAKNAIKELV-----------------ENDEIGIIIITER----- 53 (100)
T ss_pred CEEEEEeCHHHHH-----HHHHcCCCceEEeCCHHHHHHHHHHHh-----------------hCCCeEEEEEcHH-----
Confidence 4677888744332 24446874 567877788877774321 3567899998743
Q ss_pred HHHHHHHHhhcCCCCCcEEEE
Q 026247 128 GYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~l 148 (241)
++..++..-....|+|+.
T Consensus 54 ---~~~~i~~~i~~~~P~Ii~ 71 (100)
T PRK03957 54 ---IAEEIRDLISVALPIIVE 71 (100)
T ss_pred ---HHHHHHHHHhcCCCEEEE
Confidence 334444322245686665
Done!