Query 026247
Match_columns 241
No_of_seqs 225 out of 1606
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 4.7E-29 1.6E-33 198.4 15.7 120 47-187 11-132 (134)
2 3gl9_A Response regulator; bet 99.9 3.1E-24 1E-28 164.3 17.7 118 49-187 3-121 (122)
3 2lpm_A Two-component response 99.9 2.2E-26 7.7E-31 180.5 2.9 114 47-187 7-121 (123)
4 2r25_B Osmosensing histidine p 99.9 1.1E-23 3.7E-28 163.6 16.9 126 48-189 2-128 (133)
5 3t6k_A Response regulator rece 99.9 1.2E-23 4E-28 164.0 16.5 121 48-189 4-125 (136)
6 3f6p_A Transcriptional regulat 99.9 2.9E-23 9.9E-28 158.1 16.6 117 49-188 3-119 (120)
7 3h1g_A Chemotaxis protein CHEY 99.9 5.4E-23 1.8E-27 158.3 17.0 122 47-188 4-127 (129)
8 3m6m_D Sensory/regulatory prot 99.9 9E-23 3.1E-27 160.4 16.3 122 46-188 12-136 (143)
9 1dbw_A Transcriptional regulat 99.9 2.7E-22 9.2E-27 153.3 18.3 120 48-189 3-122 (126)
10 3gt7_A Sensor protein; structu 99.9 3.7E-22 1.2E-26 158.6 18.3 125 47-192 6-131 (154)
11 3rqi_A Response regulator prot 99.9 3.1E-23 1.1E-27 170.1 11.9 119 47-187 6-124 (184)
12 3eod_A Protein HNR; response r 99.9 3.2E-22 1.1E-26 153.4 16.1 122 46-189 5-127 (130)
13 2pl1_A Transcriptional regulat 99.9 3.8E-22 1.3E-26 150.7 15.7 117 49-187 1-117 (121)
14 3lua_A Response regulator rece 99.9 1.6E-22 5.4E-27 157.3 13.6 124 48-192 4-131 (140)
15 1srr_A SPO0F, sporulation resp 99.9 3.7E-22 1.3E-26 151.8 15.1 118 49-188 4-121 (124)
16 3hdv_A Response regulator; PSI 99.9 6.3E-22 2.1E-26 152.9 16.3 125 47-191 6-130 (136)
17 4e7p_A Response regulator; DNA 99.9 8.5E-22 2.9E-26 155.3 17.3 126 43-190 15-142 (150)
18 3crn_A Response regulator rece 99.9 5.2E-22 1.8E-26 153.3 15.5 119 48-188 3-121 (132)
19 1mb3_A Cell division response 99.9 4.8E-22 1.6E-26 150.7 14.9 119 49-188 2-121 (124)
20 3kto_A Response regulator rece 99.9 1.6E-22 5.4E-27 157.0 12.2 121 48-190 6-128 (136)
21 1jbe_A Chemotaxis protein CHEY 99.9 1.4E-21 4.9E-26 149.1 17.3 120 47-187 3-124 (128)
22 1p6q_A CHEY2; chemotaxis, sign 99.9 5.9E-22 2E-26 151.5 14.8 120 48-188 6-127 (129)
23 1tmy_A CHEY protein, TMY; chem 99.9 5.8E-22 2E-26 149.7 14.3 117 48-186 2-119 (120)
24 3b2n_A Uncharacterized protein 99.9 8.5E-22 2.9E-26 152.3 15.5 122 48-191 3-126 (133)
25 1zgz_A Torcad operon transcrip 99.9 1E-21 3.5E-26 148.7 15.6 116 49-187 3-118 (122)
26 3f6c_A Positive transcription 99.9 3.8E-22 1.3E-26 153.5 13.3 122 48-191 1-123 (134)
27 3heb_A Response regulator rece 99.9 1.5E-21 5E-26 154.1 16.7 132 48-191 4-138 (152)
28 1dz3_A Stage 0 sporulation pro 99.9 7.5E-22 2.6E-26 151.6 14.6 121 49-190 3-125 (130)
29 1i3c_A Response regulator RCP1 99.9 2.4E-21 8.1E-26 152.8 17.9 128 47-188 7-137 (149)
30 3hv2_A Response regulator/HD d 99.9 1.1E-21 3.7E-26 155.2 15.9 121 46-188 12-133 (153)
31 3i42_A Response regulator rece 99.9 4.9E-22 1.7E-26 151.8 13.5 120 48-189 3-123 (127)
32 3mm4_A Histidine kinase homolo 99.9 6.8E-22 2.3E-26 165.6 15.5 135 46-190 59-198 (206)
33 3r0j_A Possible two component 99.9 7.5E-22 2.6E-26 169.2 16.1 122 46-189 21-142 (250)
34 1xhf_A DYE resistance, aerobic 99.9 1.7E-21 5.7E-26 147.8 16.2 117 48-187 3-119 (123)
35 3n0r_A Response regulator; sig 99.9 8.2E-23 2.8E-27 180.7 10.1 118 48-190 160-279 (286)
36 2a9o_A Response regulator; ess 99.9 1.3E-21 4.4E-26 147.2 15.3 117 49-188 2-118 (120)
37 3ilh_A Two component response 99.9 1.7E-21 5.8E-26 151.4 16.4 130 46-191 7-142 (146)
38 3snk_A Response regulator CHEY 99.9 7.7E-23 2.6E-27 158.4 8.5 121 46-188 12-133 (135)
39 3jte_A Response regulator rece 99.9 2.1E-21 7.3E-26 151.1 16.5 122 48-189 3-124 (143)
40 4dad_A Putative pilus assembly 99.9 3.9E-22 1.3E-26 156.1 12.1 125 44-189 16-142 (146)
41 3grc_A Sensor protein, kinase; 99.9 2.9E-22 9.9E-27 155.5 11.1 124 47-191 5-130 (140)
42 3kht_A Response regulator; PSI 99.9 2.7E-21 9.1E-26 151.0 16.4 122 47-189 4-129 (144)
43 3hdg_A Uncharacterized protein 99.9 1E-21 3.4E-26 151.9 13.6 121 47-189 6-126 (137)
44 3luf_A Two-component system re 99.9 1.3E-21 4.3E-26 170.1 15.7 123 47-189 123-246 (259)
45 2qzj_A Two-component response 99.9 8.9E-22 3.1E-26 153.2 13.3 118 48-188 4-121 (136)
46 3c3m_A Response regulator rece 99.9 2.5E-21 8.5E-26 150.6 15.8 121 48-189 3-124 (138)
47 3hzh_A Chemotaxis response reg 99.9 1.6E-21 5.5E-26 155.3 14.9 121 45-187 33-156 (157)
48 1k68_A Phytochrome response re 99.9 5.8E-21 2E-25 146.8 17.2 127 48-188 2-131 (140)
49 3nhm_A Response regulator; pro 99.9 1.1E-21 3.9E-26 150.6 13.1 121 48-191 4-125 (133)
50 1mvo_A PHOP response regulator 99.9 2.6E-21 8.9E-26 149.2 15.1 120 48-189 3-122 (136)
51 3cnb_A DNA-binding response re 99.9 5.9E-21 2E-25 147.8 16.9 126 46-192 6-134 (143)
52 1dcf_A ETR1 protein; beta-alph 99.9 6.7E-21 2.3E-25 147.3 17.1 121 47-189 6-130 (136)
53 3eul_A Possible nitrate/nitrit 99.9 3.8E-21 1.3E-25 151.6 15.9 128 42-191 9-138 (152)
54 2jba_A Phosphate regulon trans 99.9 8.1E-22 2.8E-26 150.1 11.6 119 49-188 3-122 (127)
55 3cfy_A Putative LUXO repressor 99.9 2.2E-21 7.6E-26 151.1 14.0 118 49-188 5-122 (137)
56 2qxy_A Response regulator; reg 99.9 4.4E-21 1.5E-25 149.2 15.3 123 47-192 3-125 (142)
57 2ayx_A Sensor kinase protein R 99.9 2.5E-21 8.7E-26 167.4 15.4 121 45-187 126-246 (254)
58 3h5i_A Response regulator/sens 99.9 1.7E-21 5.8E-26 151.9 12.9 120 48-189 5-125 (140)
59 3lte_A Response regulator; str 99.9 6.5E-21 2.2E-25 146.2 15.9 122 47-190 5-127 (132)
60 1zh2_A KDP operon transcriptio 99.9 2.4E-21 8.3E-26 145.9 13.2 116 49-187 2-117 (121)
61 2zay_A Response regulator rece 99.9 2E-21 7E-26 151.9 13.2 124 46-190 6-130 (147)
62 1k66_A Phytochrome response re 99.9 8.1E-21 2.8E-25 147.8 16.4 129 47-188 5-138 (149)
63 1yio_A Response regulatory pro 99.9 3E-21 1E-25 160.0 14.6 119 48-188 4-122 (208)
64 1a04_A Nitrate/nitrite respons 99.9 5.8E-21 2E-25 159.3 16.2 122 47-190 4-127 (215)
65 2qr3_A Two-component system re 99.9 6.9E-21 2.3E-25 147.2 14.8 122 48-191 3-129 (140)
66 3a10_A Response regulator; pho 99.9 3.5E-21 1.2E-25 144.5 12.5 114 49-186 2-115 (116)
67 3q9s_A DNA-binding response re 99.9 5.6E-21 1.9E-25 164.6 15.1 121 47-190 36-156 (249)
68 3cg0_A Response regulator rece 99.9 1.1E-20 3.6E-25 146.1 14.8 121 46-189 7-129 (140)
69 2rjn_A Response regulator rece 99.9 2E-20 6.7E-25 147.8 16.4 121 46-188 5-126 (154)
70 3cz5_A Two-component response 99.9 1.8E-20 6.1E-25 147.9 16.0 122 47-190 4-127 (153)
71 3dzd_A Transcriptional regulat 99.9 1.9E-21 6.6E-26 177.8 11.9 117 50-188 2-118 (368)
72 3kcn_A Adenylate cyclase homol 99.9 1.9E-20 6.7E-25 147.6 15.5 120 47-188 3-123 (151)
73 1qkk_A DCTD, C4-dicarboxylate 99.9 1.8E-20 6.1E-25 148.2 15.3 120 47-188 2-121 (155)
74 3cg4_A Response regulator rece 99.9 5.5E-21 1.9E-25 148.3 12.0 122 47-189 6-128 (142)
75 3cu5_A Two component transcrip 99.9 6.3E-21 2.1E-25 149.3 12.3 118 49-188 3-123 (141)
76 3eqz_A Response regulator; str 99.9 5.5E-21 1.9E-25 146.6 11.7 122 48-192 3-129 (135)
77 1kgs_A DRRD, DNA binding respo 99.8 1.2E-20 3.9E-25 158.1 14.4 121 48-190 2-122 (225)
78 3n53_A Response regulator rece 99.8 4.7E-21 1.6E-25 148.9 10.3 120 48-189 3-123 (140)
79 3eq2_A Probable two-component 99.8 9E-21 3.1E-25 173.2 13.2 118 48-187 5-123 (394)
80 2gkg_A Response regulator homo 99.8 3.2E-20 1.1E-24 140.4 13.9 118 49-188 6-125 (127)
81 1s8n_A Putative antiterminator 99.8 1.8E-20 6E-25 155.5 13.2 118 48-188 13-131 (205)
82 2qvg_A Two component response 99.8 5.9E-20 2E-24 142.6 15.2 128 47-189 6-136 (143)
83 2qsj_A DNA-binding response re 99.8 3.3E-20 1.1E-24 146.3 13.6 123 48-192 3-128 (154)
84 2jk1_A HUPR, hydrogenase trans 99.8 4.5E-20 1.6E-24 143.3 14.2 116 49-187 2-118 (139)
85 1ys7_A Transcriptional regulat 99.8 2E-20 6.7E-25 157.5 12.5 120 48-189 7-126 (233)
86 1w25_A Stalked-cell differenti 99.8 4E-20 1.4E-24 171.5 15.2 118 49-187 2-120 (459)
87 2pln_A HP1043, response regula 99.8 1.3E-19 4.5E-24 140.1 15.8 119 44-189 14-134 (137)
88 2oqr_A Sensory transduction pr 99.8 4.9E-20 1.7E-24 155.0 14.0 119 48-189 4-122 (230)
89 1ny5_A Transcriptional regulat 99.8 4.2E-20 1.4E-24 169.9 14.4 117 49-187 1-117 (387)
90 3kyj_B CHEY6 protein, putative 99.8 4.5E-20 1.6E-24 144.3 12.4 119 45-186 10-143 (145)
91 2rdm_A Response regulator rece 99.8 1.6E-19 5.5E-24 138.1 14.9 121 47-191 4-126 (132)
92 2gwr_A DNA-binding response re 99.8 6.6E-20 2.3E-24 155.8 13.4 119 49-190 6-124 (238)
93 2qv0_A Protein MRKE; structura 99.8 9E-20 3.1E-24 141.9 13.0 119 47-189 8-128 (143)
94 3c97_A Signal transduction his 99.8 7.7E-20 2.6E-24 142.2 12.6 118 48-189 10-131 (140)
95 2j48_A Two-component sensor ki 99.8 1.1E-19 3.6E-24 135.2 12.4 115 49-187 2-117 (119)
96 3klo_A Transcriptional regulat 99.8 1.3E-20 4.4E-25 158.9 7.9 124 46-190 5-131 (225)
97 3t8y_A CHEB, chemotaxis respon 99.8 2.3E-19 7.9E-24 144.1 14.9 120 47-189 24-156 (164)
98 3c3w_A Two component transcrip 99.8 1.5E-20 5E-25 158.9 6.8 119 49-189 2-122 (225)
99 3bre_A Probable two-component 99.8 1.3E-19 4.6E-24 162.3 12.7 118 48-186 18-137 (358)
100 2b4a_A BH3024; flavodoxin-like 99.8 1.7E-19 5.9E-24 139.7 10.9 119 44-188 11-131 (138)
101 1dc7_A NTRC, nitrogen regulati 99.8 2.2E-21 7.6E-26 146.5 0.0 119 48-188 3-121 (124)
102 1p2f_A Response regulator; DRR 99.8 6E-19 2E-23 147.5 14.1 117 48-189 2-118 (220)
103 2hqr_A Putative transcriptiona 99.8 1E-18 3.6E-23 146.3 15.5 115 49-189 1-116 (223)
104 3sy8_A ROCR; TIM barrel phosph 99.8 1.9E-19 6.4E-24 165.4 11.1 120 48-189 3-129 (400)
105 1qo0_D AMIR; binding protein, 99.8 5.7E-19 1.9E-23 145.4 10.8 114 47-187 11-124 (196)
106 1a2o_A CHEB methylesterase; ba 99.7 2.3E-17 7.8E-22 149.9 15.1 119 48-189 3-134 (349)
107 3luf_A Two-component system re 99.7 6.9E-18 2.4E-22 146.4 9.9 103 49-176 5-108 (259)
108 2vyc_A Biodegradative arginine 99.7 4E-17 1.4E-21 161.7 8.6 118 49-188 1-133 (755)
109 1w25_A Stalked-cell differenti 99.3 1.5E-10 5E-15 107.0 16.3 117 48-187 152-269 (459)
110 3cwo_X Beta/alpha-barrel prote 99.2 5E-12 1.7E-16 105.7 4.1 93 73-187 6-100 (237)
111 2ayx_A Sensor kinase protein R 97.8 4.5E-05 1.5E-09 65.0 8.1 97 46-187 9-105 (254)
112 3n75_A LDC, lysine decarboxyla 97.4 8.4E-05 2.9E-09 73.2 3.8 93 62-178 20-112 (715)
113 3q7r_A Transcriptional regulat 97.1 0.0049 1.7E-07 45.9 10.0 107 46-187 10-117 (121)
114 2yxb_A Coenzyme B12-dependent 97.1 0.013 4.6E-07 46.8 13.3 119 47-187 17-144 (161)
115 3cwo_X Beta/alpha-barrel prote 96.5 0.0068 2.3E-07 49.6 7.3 70 112-183 143-221 (237)
116 1ccw_A Protein (glutamate muta 96.0 0.12 4E-06 40.0 11.9 115 50-186 5-134 (137)
117 1wv2_A Thiazole moeity, thiazo 93.9 0.52 1.8E-05 40.7 10.7 83 64-171 127-216 (265)
118 3q58_A N-acetylmannosamine-6-p 92.8 0.94 3.2E-05 38.0 10.5 86 61-171 118-210 (229)
119 2xij_A Methylmalonyl-COA mutas 92.6 1.9 6.4E-05 42.6 13.6 119 46-186 602-729 (762)
120 1y80_A Predicted cobalamin bin 92.4 0.68 2.3E-05 37.9 9.0 99 48-170 88-196 (210)
121 1req_A Methylmalonyl-COA mutas 92.3 1.8 6E-05 42.6 13.0 119 46-186 594-721 (727)
122 3ezx_A MMCP 1, monomethylamine 92.2 0.83 2.8E-05 38.0 9.3 99 48-170 92-202 (215)
123 2i2x_B MTAC, methyltransferase 91.9 1.5 5.2E-05 37.2 10.9 112 48-187 123-243 (258)
124 3igs_A N-acetylmannosamine-6-p 91.5 1.6 5.4E-05 36.6 10.4 85 61-170 118-209 (232)
125 3fkq_A NTRC-like two-domain pr 89.6 0.84 2.9E-05 40.7 7.4 106 45-186 18-126 (373)
126 3kp1_A D-ornithine aminomutase 89.3 1.8 6.1E-05 42.1 9.6 117 48-188 602-735 (763)
127 3qja_A IGPS, indole-3-glycerol 89.2 4.8 0.00016 34.6 11.6 100 50-171 138-242 (272)
128 1xrs_B D-lysine 5,6-aminomutas 88.5 5 0.00017 34.5 11.2 114 48-185 120-255 (262)
129 2htm_A Thiazole biosynthesis p 87.8 1 3.6E-05 38.9 6.4 81 66-170 118-206 (268)
130 3tsm_A IGPS, indole-3-glycerol 86.5 10 0.00035 32.6 12.1 100 62-187 159-267 (272)
131 3o63_A Probable thiamine-phosp 86.4 11 0.00039 31.6 12.1 88 76-186 140-239 (243)
132 2ekc_A AQ_1548, tryptophan syn 84.9 2.6 8.9E-05 35.8 7.4 77 110-187 41-145 (262)
133 2bfw_A GLGA glycogen synthase; 84.9 11 0.00039 29.0 10.8 107 47-187 69-179 (200)
134 1geq_A Tryptophan synthase alp 83.2 4.6 0.00016 33.4 8.2 71 110-183 29-127 (248)
135 2v5j_A 2,4-dihydroxyhept-2-ENE 81.1 24 0.00082 30.3 12.2 76 110-185 57-133 (287)
136 1qop_A Tryptophan synthase alp 81.1 3.9 0.00013 34.8 7.0 77 110-187 41-145 (268)
137 3rht_A (gatase1)-like protein; 79.4 0.64 2.2E-05 40.0 1.5 33 48-80 4-38 (259)
138 3qz6_A HPCH/HPAI aldolase; str 79.3 10 0.00034 32.2 9.0 75 110-185 34-110 (261)
139 2gek_A Phosphatidylinositol ma 79.1 8.9 0.0003 33.0 8.9 67 114-188 283-349 (406)
140 3s83_A Ggdef family protein; s 78.6 4.1 0.00014 33.8 6.3 99 64-184 144-254 (259)
141 1r8j_A KAIA; circadian clock p 78.0 29 0.00099 29.9 11.3 84 46-151 7-90 (289)
142 3nav_A Tryptophan synthase alp 77.6 2.6 9E-05 36.3 4.8 58 128-186 84-147 (271)
143 3ffs_A Inosine-5-monophosphate 77.4 40 0.0014 30.5 12.9 100 49-170 157-274 (400)
144 2vws_A YFAU, 2-keto-3-deoxy su 77.4 32 0.0011 29.0 12.4 76 110-185 36-112 (267)
145 1yad_A Regulatory protein TENI 75.7 15 0.00053 29.6 8.9 69 77-170 116-191 (221)
146 3fro_A GLGA glycogen synthase; 74.9 40 0.0014 29.0 13.3 108 47-187 284-394 (439)
147 3bul_A Methionine synthase; tr 74.2 15 0.00052 35.0 9.5 112 48-186 98-223 (579)
148 3vnd_A TSA, tryptophan synthas 71.8 3 0.0001 35.8 3.7 57 129-186 83-145 (267)
149 3lab_A Putative KDPG (2-keto-3 71.4 19 0.00066 29.9 8.5 93 69-184 11-104 (217)
150 2v82_A 2-dehydro-3-deoxy-6-pho 71.2 12 0.00042 30.0 7.2 78 66-170 95-175 (212)
151 2xci_A KDO-transferase, 3-deox 70.5 16 0.00055 32.0 8.4 68 114-188 278-346 (374)
152 3f4w_A Putative hexulose 6 pho 70.5 17 0.00059 28.9 7.9 56 113-170 127-186 (211)
153 1ujp_A Tryptophan synthase alp 70.2 8 0.00027 33.1 6.1 73 110-185 40-140 (271)
154 1xi3_A Thiamine phosphate pyro 70.0 19 0.00064 28.6 8.0 55 113-170 128-189 (215)
155 3fwz_A Inner membrane protein 68.8 27 0.00094 25.8 8.3 55 112-170 70-124 (140)
156 4e38_A Keto-hydroxyglutarate-a 67.4 46 0.0016 27.8 10.0 98 64-184 27-125 (232)
157 4a29_A Engineered retro-aldol 65.4 64 0.0022 27.5 11.5 88 61-171 142-233 (258)
158 2f9f_A First mannosyl transfer 64.8 43 0.0015 25.3 9.4 66 114-189 98-163 (177)
159 2iw1_A Lipopolysaccharide core 64.3 23 0.00078 29.9 7.8 65 114-187 271-336 (374)
160 2lci_A Protein OR36; structura 63.3 22 0.00077 25.8 6.3 39 51-89 80-118 (134)
161 3c48_A Predicted glycosyltrans 62.4 39 0.0013 29.3 9.2 65 114-187 326-390 (438)
162 4e5v_A Putative THUA-like prot 62.4 7.3 0.00025 33.5 4.2 82 47-148 3-92 (281)
163 4fo4_A Inosine 5'-monophosphat 62.3 74 0.0025 28.3 11.0 100 48-170 120-239 (366)
164 4h08_A Putative hydrolase; GDS 62.2 46 0.0016 25.6 8.8 89 44-151 16-120 (200)
165 1v4v_A UDP-N-acetylglucosamine 61.6 74 0.0025 26.9 11.0 60 114-188 275-334 (376)
166 2xxa_A Signal recognition part 61.0 24 0.00084 32.1 7.7 38 112-151 182-224 (433)
167 3okp_A GDP-mannose-dependent a 60.8 24 0.00083 29.9 7.4 65 114-187 273-343 (394)
168 3bo9_A Putative nitroalkan dio 60.5 72 0.0025 27.5 10.5 81 66-170 118-204 (326)
169 2w6r_A Imidazole glycerol phos 60.3 41 0.0014 27.7 8.6 41 129-171 189-229 (266)
170 1j8m_F SRP54, signal recogniti 59.8 29 0.001 29.7 7.7 58 48-128 126-193 (297)
171 3dr5_A Putative O-methyltransf 59.6 21 0.00073 28.9 6.5 66 48-136 81-150 (221)
172 1rzu_A Glycogen synthase 1; gl 59.6 52 0.0018 29.1 9.7 107 48-186 320-438 (485)
173 3khj_A Inosine-5-monophosphate 58.7 75 0.0026 28.1 10.4 100 49-170 118-235 (361)
174 2r60_A Glycosyl transferase, g 58.7 57 0.002 29.0 9.8 99 61-187 321-423 (499)
175 3l4e_A Uncharacterized peptida 58.5 43 0.0015 27.1 8.2 76 48-150 27-121 (206)
176 1dxe_A 2-dehydro-3-deoxy-galac 58.5 79 0.0027 26.3 12.9 75 110-184 37-112 (256)
177 2gjl_A Hypothetical protein PA 58.4 88 0.003 26.8 11.4 81 66-170 112-200 (328)
178 3beo_A UDP-N-acetylglucosamine 58.1 83 0.0028 26.4 11.4 61 113-188 282-342 (375)
179 4dzz_A Plasmid partitioning pr 58.1 43 0.0015 25.8 8.0 65 48-136 30-96 (206)
180 1rd5_A Tryptophan synthase alp 58.0 18 0.00062 30.2 5.9 74 110-186 42-140 (262)
181 3qhp_A Type 1 capsular polysac 57.7 54 0.0018 24.1 11.5 106 47-187 31-139 (166)
182 3tfw_A Putative O-methyltransf 57.1 77 0.0026 25.7 9.7 80 48-150 88-170 (248)
183 2iuy_A Avigt4, glycosyltransfe 56.7 17 0.00057 30.7 5.5 65 114-187 232-307 (342)
184 1wa3_A 2-keto-3-deoxy-6-phosph 56.0 72 0.0025 25.0 10.0 94 67-182 6-100 (205)
185 1sui_A Caffeoyl-COA O-methyltr 55.9 82 0.0028 25.7 10.8 71 48-136 104-177 (247)
186 1geq_A Tryptophan synthase alp 55.2 66 0.0022 26.1 8.9 41 129-171 180-220 (248)
187 1vgv_A UDP-N-acetylglucosamine 55.1 46 0.0016 28.2 8.2 43 141-188 300-342 (384)
188 1wa3_A 2-keto-3-deoxy-6-phosph 54.9 33 0.0011 27.1 6.8 54 113-170 124-177 (205)
189 4fxs_A Inosine-5'-monophosphat 54.9 21 0.00073 33.1 6.4 58 111-170 241-299 (496)
190 4hjf_A Ggdef family protein; s 54.9 8.6 0.00029 33.8 3.5 102 63-186 216-329 (340)
191 3l9w_A Glutathione-regulated p 54.8 48 0.0016 29.8 8.5 55 112-170 67-121 (413)
192 2p9j_A Hypothetical protein AQ 54.7 62 0.0021 23.9 8.1 48 129-179 42-89 (162)
193 3ceu_A Thiamine phosphate pyro 54.5 31 0.0011 27.7 6.6 57 112-169 106-170 (210)
194 4fzr_A SSFS6; structural genom 54.5 26 0.0009 30.3 6.6 38 42-79 9-50 (398)
195 2jjm_A Glycosyl transferase, g 54.4 26 0.00089 30.1 6.5 66 113-187 284-349 (394)
196 1thf_D HISF protein; thermophI 54.3 55 0.0019 26.6 8.3 69 112-182 163-241 (253)
197 1i4n_A Indole-3-glycerol phosp 53.8 99 0.0034 26.0 10.8 86 62-171 140-230 (251)
198 1ka9_F Imidazole glycerol phos 52.8 37 0.0013 27.7 7.0 67 114-182 166-242 (252)
199 2tps_A Protein (thiamin phosph 52.6 64 0.0022 25.7 8.3 56 113-170 136-199 (227)
200 3rc1_A Sugar 3-ketoreductase; 52.4 86 0.0029 27.0 9.7 107 45-186 24-137 (350)
201 1xm3_A Thiazole biosynthesis p 52.3 19 0.00065 30.4 5.1 43 127-171 165-207 (264)
202 3r2g_A Inosine 5'-monophosphat 52.1 27 0.00092 31.2 6.3 58 111-170 110-168 (361)
203 3ajx_A 3-hexulose-6-phosphate 51.7 6.9 0.00024 31.3 2.1 66 119-185 29-99 (207)
204 2w6r_A Imidazole glycerol phos 51.6 37 0.0013 28.0 6.8 56 114-171 44-103 (266)
205 2a1i_A DNA excision repair pro 51.4 54 0.0019 25.5 7.1 45 47-91 83-131 (146)
206 3hvb_A Protein FIMX; EAL phosp 51.4 20 0.00067 32.1 5.4 92 64-177 327-429 (437)
207 2r6o_A Putative diguanylate cy 51.1 21 0.00073 30.5 5.3 100 65-186 169-280 (294)
208 2oo3_A Protein involved in cat 50.8 20 0.00068 31.0 5.0 70 48-136 113-183 (283)
209 1req_B Methylmalonyl-COA mutas 50.7 28 0.00097 33.5 6.6 103 58-186 524-633 (637)
210 1tqj_A Ribulose-phosphate 3-ep 50.6 24 0.00083 29.0 5.4 73 112-187 29-110 (230)
211 3sy8_A ROCR; TIM barrel phosph 50.5 16 0.00053 32.4 4.5 107 56-185 274-392 (400)
212 3tha_A Tryptophan synthase alp 50.5 12 0.00041 31.8 3.5 53 129-185 79-137 (252)
213 3jy6_A Transcriptional regulat 50.4 88 0.003 25.2 9.0 12 113-124 85-96 (276)
214 1qdl_B Protein (anthranilate s 50.0 6.3 0.00022 31.5 1.6 32 50-81 2-34 (195)
215 4gud_A Imidazole glycerol phos 49.9 50 0.0017 26.1 7.2 35 50-84 4-38 (211)
216 2p10_A MLL9387 protein; putati 49.6 67 0.0023 27.8 8.1 81 69-171 160-259 (286)
217 1x1o_A Nicotinate-nucleotide p 49.3 60 0.0021 27.9 7.9 92 50-169 168-266 (286)
218 2qzs_A Glycogen synthase; glyc 49.1 1.1E+02 0.0036 27.0 9.9 64 114-186 367-439 (485)
219 3c3y_A Pfomt, O-methyltransfer 49.0 71 0.0024 25.8 8.1 71 48-136 95-168 (237)
220 4avf_A Inosine-5'-monophosphat 48.9 37 0.0013 31.3 7.0 58 111-170 239-297 (490)
221 3p9n_A Possible methyltransfer 48.9 86 0.0029 23.9 10.8 81 48-149 67-153 (189)
222 3hm2_A Precorrin-6Y C5,15-meth 48.8 48 0.0016 24.7 6.6 76 47-147 48-125 (178)
223 1ka9_F Imidazole glycerol phos 48.7 60 0.002 26.4 7.6 54 116-171 48-104 (252)
224 1izc_A Macrophomate synthase i 48.4 77 0.0026 27.8 8.7 75 111-185 61-139 (339)
225 2kx7_A Sensor-like histidine k 48.0 22 0.00075 26.7 4.2 92 46-186 5-97 (117)
226 1qop_A Tryptophan synthase alp 48.0 32 0.0011 28.9 5.9 41 129-171 194-234 (268)
227 3inp_A D-ribulose-phosphate 3- 47.8 31 0.0011 29.0 5.8 73 113-186 53-131 (246)
228 1gox_A (S)-2-hydroxy-acid oxid 47.7 1.3E+02 0.0046 26.4 10.2 90 62-173 215-312 (370)
229 1vc4_A Indole-3-glycerol phosp 47.7 20 0.0007 30.1 4.6 97 50-171 131-236 (254)
230 3gk5_A Uncharacterized rhodane 47.5 68 0.0023 22.5 6.9 40 49-88 56-95 (108)
231 2pyy_A Ionotropic glutamate re 47.3 71 0.0024 24.2 7.6 50 46-121 110-159 (228)
232 4f3h_A Fimxeal, putative uncha 46.9 60 0.002 26.4 7.4 90 63-174 147-248 (250)
233 1ep3_A Dihydroorotate dehydrog 46.9 62 0.0021 27.2 7.6 57 129-187 230-292 (311)
234 3hv8_A Protein FIMX; EAL phosp 46.7 15 0.0005 30.6 3.5 92 64-177 158-260 (268)
235 2px0_A Flagellar biosynthesis 46.3 61 0.0021 27.6 7.5 15 112-128 181-195 (296)
236 3usb_A Inosine-5'-monophosphat 46.2 43 0.0015 31.1 7.0 58 111-170 266-324 (511)
237 3tr6_A O-methyltransferase; ce 46.1 69 0.0024 25.1 7.4 70 48-136 89-161 (225)
238 2l69_A Rossmann 2X3 fold prote 46.0 82 0.0028 22.8 10.9 41 50-90 4-44 (134)
239 2z6i_A Trans-2-enoyl-ACP reduc 45.6 1.2E+02 0.0041 26.1 9.4 79 67-169 105-189 (332)
240 3tqv_A Nicotinate-nucleotide p 45.4 48 0.0016 28.7 6.6 71 113-186 168-240 (287)
241 3gjy_A Spermidine synthase; AP 45.0 63 0.0021 28.1 7.4 70 47-137 112-188 (317)
242 3pfn_A NAD kinase; structural 44.6 1E+02 0.0035 27.4 8.9 118 49-189 39-165 (365)
243 1h5y_A HISF; histidine biosynt 44.5 55 0.0019 26.2 6.7 68 113-182 167-244 (253)
244 3u81_A Catechol O-methyltransf 44.4 60 0.002 25.6 6.8 60 48-124 83-145 (221)
245 3usb_A Inosine-5'-monophosphat 44.2 1.9E+02 0.0067 26.6 12.7 102 48-171 268-388 (511)
246 3oy2_A Glycosyltransferase B73 43.4 82 0.0028 27.0 8.0 64 114-187 274-354 (413)
247 3foj_A Uncharacterized protein 43.4 60 0.0021 22.3 6.0 38 48-85 56-93 (100)
248 3ovp_A Ribulose-phosphate 3-ep 42.8 47 0.0016 27.3 6.0 56 113-170 134-196 (228)
249 2avd_A Catechol-O-methyltransf 42.6 93 0.0032 24.3 7.7 67 48-136 94-166 (229)
250 2yw3_A 4-hydroxy-2-oxoglutarat 42.6 1.3E+02 0.0044 24.1 8.6 89 71-187 103-199 (207)
251 3bw2_A 2-nitropropane dioxygen 42.5 1.7E+02 0.0058 25.4 11.4 77 69-169 142-235 (369)
252 1eep_A Inosine 5'-monophosphat 42.4 1.8E+02 0.0062 25.7 12.7 90 59-170 180-284 (404)
253 2d00_A V-type ATP synthase sub 42.4 96 0.0033 22.5 9.1 78 47-149 2-79 (109)
254 1uir_A Polyamine aminopropyltr 42.2 1.1E+02 0.0038 25.9 8.6 68 48-137 101-183 (314)
255 1y0e_A Putative N-acetylmannos 42.2 41 0.0014 26.9 5.5 42 128-171 163-204 (223)
256 3k4h_A Putative transcriptiona 42.2 83 0.0028 25.4 7.5 15 64-78 35-49 (292)
257 1qo2_A Molecule: N-((5-phospho 42.2 93 0.0032 25.2 7.8 67 111-180 155-238 (241)
258 1lst_A Lysine, arginine, ornit 42.1 95 0.0032 23.9 7.6 53 47-121 110-162 (239)
259 3kts_A Glycerol uptake operon 42.0 23 0.0008 28.8 3.9 55 110-170 124-178 (192)
260 3kl4_A SRP54, signal recogniti 41.6 1E+02 0.0035 28.0 8.6 12 111-122 177-188 (433)
261 3o07_A Pyridoxine biosynthesis 41.6 26 0.0009 30.4 4.3 59 128-188 186-251 (291)
262 1o4u_A Type II quinolic acid p 41.6 65 0.0022 27.7 6.9 56 129-186 180-235 (285)
263 2lnd_A De novo designed protei 41.4 90 0.0031 21.9 7.7 56 130-188 42-101 (112)
264 1h1y_A D-ribulose-5-phosphate 41.4 73 0.0025 25.8 7.0 56 113-170 138-200 (228)
265 3vk5_A MOEO5; TIM barrel, tran 41.2 76 0.0026 27.4 7.2 59 113-172 199-257 (286)
266 3c3p_A Methyltransferase; NP_9 41.1 1E+02 0.0035 23.9 7.7 65 48-137 81-148 (210)
267 3h2s_A Putative NADH-flavin re 41.0 47 0.0016 25.9 5.6 36 49-84 1-36 (224)
268 1qpo_A Quinolinate acid phosph 41.0 1.4E+02 0.0047 25.6 8.8 95 50-169 167-267 (284)
269 4adt_A Pyridoxine biosynthetic 41.0 1.3E+02 0.0045 25.9 8.8 74 75-170 129-237 (297)
270 3eme_A Rhodanese-like domain p 41.0 56 0.0019 22.6 5.5 39 48-86 56-94 (103)
271 1zh8_A Oxidoreductase; TM0312, 40.8 1.5E+02 0.0053 25.2 9.4 45 142-186 82-130 (340)
272 3huu_A Transcription regulator 40.8 1.5E+02 0.005 24.2 9.0 71 57-151 39-115 (305)
273 3l0g_A Nicotinate-nucleotide p 40.8 60 0.002 28.3 6.5 71 113-186 177-249 (300)
274 3duw_A OMT, O-methyltransferas 40.7 1.3E+02 0.0044 23.4 10.4 82 48-150 83-167 (223)
275 1pii_A N-(5'phosphoribosyl)ant 40.5 1.5E+02 0.0052 27.1 9.6 105 62-193 147-260 (452)
276 1vzw_A Phosphoribosyl isomeras 40.3 1.4E+02 0.0047 24.0 8.6 67 112-180 158-237 (244)
277 3euw_A MYO-inositol dehydrogen 40.2 1.7E+02 0.0058 24.8 9.7 44 142-185 65-112 (344)
278 2fhp_A Methylase, putative; al 40.2 1.1E+02 0.0039 22.7 8.6 69 48-135 67-138 (187)
279 1i1q_B Anthranilate synthase c 40.2 46 0.0016 26.1 5.4 40 49-88 1-43 (192)
280 3aon_B V-type sodium ATPase su 40.2 1E+02 0.0035 22.6 7.0 74 48-148 2-75 (115)
281 1jcn_A Inosine monophosphate d 40.0 1.6E+02 0.0056 26.9 9.9 44 128-173 346-390 (514)
282 3gnn_A Nicotinate-nucleotide p 40.0 1.8E+02 0.0063 25.1 9.7 65 76-168 214-278 (298)
283 2i7c_A Spermidine synthase; tr 39.9 1.5E+02 0.0052 24.6 9.0 68 48-137 102-180 (283)
284 3e8x_A Putative NAD-dependent 39.7 27 0.00091 27.9 3.9 39 42-80 15-53 (236)
285 3ec7_A Putative dehydrogenase; 39.6 75 0.0026 27.5 7.2 108 46-186 21-135 (357)
286 4had_A Probable oxidoreductase 39.5 1.1E+02 0.0037 26.1 8.1 106 46-185 21-133 (350)
287 1h5y_A HISF; histidine biosynt 39.3 1.4E+02 0.0049 23.6 8.9 58 111-170 44-105 (253)
288 2fpo_A Methylase YHHF; structu 39.1 1.2E+02 0.0041 23.6 7.8 67 49-137 78-146 (202)
289 3flh_A Uncharacterized protein 39.0 66 0.0023 23.2 5.8 40 49-88 72-113 (124)
290 3s5p_A Ribose 5-phosphate isom 39.0 41 0.0014 26.8 4.7 37 43-79 16-54 (166)
291 3orh_A Guanidinoacetate N-meth 38.8 69 0.0024 25.8 6.4 54 49-123 84-138 (236)
292 2x6q_A Trehalose-synthase TRET 38.8 1.8E+02 0.0063 24.7 10.8 63 114-187 316-378 (416)
293 3cbg_A O-methyltransferase; cy 38.5 1.1E+02 0.0036 24.5 7.5 68 48-136 97-169 (232)
294 2kpo_A Rossmann 2X2 fold prote 38.5 1E+02 0.0034 21.6 6.5 41 49-89 3-43 (110)
295 2vsy_A XCC0866; transferase, g 38.4 2.2E+02 0.0075 25.5 10.6 110 47-187 405-521 (568)
296 4fo4_A Inosine 5'-monophosphat 38.3 64 0.0022 28.7 6.5 58 111-170 118-176 (366)
297 3ic5_A Putative saccharopine d 38.1 94 0.0032 21.2 7.7 40 48-88 5-45 (118)
298 3u3x_A Oxidoreductase; structu 38.0 1.2E+02 0.0042 26.2 8.3 46 141-186 87-136 (361)
299 3rot_A ABC sugar transporter, 37.8 1.5E+02 0.0051 24.1 8.5 81 49-151 4-95 (297)
300 2ift_A Putative methylase HI07 37.5 83 0.0028 24.5 6.6 67 49-136 77-148 (201)
301 3sgz_A Hydroxyacid oxidase 2; 37.5 2.1E+02 0.0071 25.3 9.7 87 62-170 207-300 (352)
302 2iuy_A Avigt4, glycosyltransfe 37.5 72 0.0025 26.6 6.5 33 48-80 3-55 (342)
303 3qk7_A Transcriptional regulat 37.2 1.1E+02 0.0038 24.9 7.6 14 64-77 32-45 (294)
304 3sz8_A 2-dehydro-3-deoxyphosph 37.2 1.2E+02 0.0042 26.0 7.9 60 111-174 160-245 (285)
305 3td9_A Branched chain amino ac 37.1 1.8E+02 0.0062 24.2 9.7 86 47-156 148-244 (366)
306 1qap_A Quinolinic acid phospho 36.9 2E+02 0.0068 24.6 9.8 91 50-168 181-277 (296)
307 2kpo_A Rossmann 2X2 fold prote 36.9 1.1E+02 0.0037 21.5 6.4 47 44-90 47-95 (110)
308 3paj_A Nicotinate-nucleotide p 36.7 59 0.002 28.5 5.9 54 129-185 219-272 (320)
309 1jcn_A Inosine monophosphate d 36.4 1.1E+02 0.0037 28.1 8.0 58 111-170 265-323 (514)
310 2gjl_A Hypothetical protein PA 36.2 1.5E+02 0.0051 25.3 8.5 53 110-171 93-145 (328)
311 1z0s_A Probable inorganic poly 36.2 34 0.0012 29.3 4.2 94 48-187 29-122 (278)
312 3llv_A Exopolyphosphatase-rela 36.0 1.2E+02 0.0041 21.8 10.1 55 112-172 69-123 (141)
313 1x1o_A Nicotinate-nucleotide p 35.9 79 0.0027 27.1 6.5 54 130-185 184-237 (286)
314 3s28_A Sucrose synthase 1; gly 35.9 2.5E+02 0.0086 27.6 10.9 64 114-186 665-728 (816)
315 1wl8_A GMP synthase [glutamine 35.8 27 0.00092 27.4 3.3 32 50-81 2-33 (189)
316 2q5c_A NTRC family transcripti 35.7 1.6E+02 0.0056 23.3 11.8 119 48-187 4-140 (196)
317 1f0k_A MURG, UDP-N-acetylgluco 35.7 54 0.0018 27.5 5.5 62 114-185 255-322 (364)
318 1g5t_A COB(I)alamin adenosyltr 35.7 78 0.0027 25.6 6.1 49 110-160 117-170 (196)
319 3ffs_A Inosine-5-monophosphate 35.6 68 0.0023 28.9 6.3 57 111-170 154-211 (400)
320 3sc6_A DTDP-4-dehydrorhamnose 35.5 86 0.0029 25.5 6.6 31 49-79 6-36 (287)
321 3f4w_A Putative hexulose 6 pho 35.4 57 0.0019 25.8 5.3 59 126-185 38-99 (211)
322 4gnr_A ABC transporter substra 35.3 1.9E+02 0.0066 24.0 9.8 88 50-161 146-241 (353)
323 2ffh_A Protein (FFH); SRP54, s 35.2 2.5E+02 0.0086 25.3 11.0 33 47-79 125-160 (425)
324 3bwc_A Spermidine synthase; SA 34.9 2E+02 0.0069 24.1 9.7 69 48-137 119-198 (304)
325 2y88_A Phosphoribosyl isomeras 34.9 85 0.0029 25.3 6.4 57 112-170 161-224 (244)
326 3hcw_A Maltose operon transcri 34.9 1E+02 0.0035 25.2 7.0 24 56-79 23-49 (295)
327 2f6u_A GGGPS, (S)-3-O-geranylg 34.7 95 0.0032 25.8 6.6 52 110-171 30-84 (234)
328 3ezy_A Dehydrogenase; structur 34.6 1.5E+02 0.0051 25.2 8.3 30 154-183 78-109 (344)
329 1ujp_A Tryptophan synthase alp 34.5 1.1E+02 0.0036 25.9 7.1 39 129-171 191-229 (271)
330 1yxy_A Putative N-acetylmannos 34.4 56 0.0019 26.4 5.2 40 128-170 175-214 (234)
331 4ef8_A Dihydroorotate dehydrog 34.4 33 0.0011 30.4 4.0 59 129-188 265-330 (354)
332 4avf_A Inosine-5'-monophosphat 34.2 2.7E+02 0.0094 25.4 13.7 99 49-170 242-360 (490)
333 4af0_A Inosine-5'-monophosphat 34.1 83 0.0028 29.8 6.7 58 110-169 290-348 (556)
334 3iwh_A Rhodanese-like domain p 33.7 84 0.0029 22.1 5.5 38 49-86 57-94 (103)
335 1qv9_A F420-dependent methylen 33.6 73 0.0025 27.1 5.6 59 111-172 62-120 (283)
336 3e3m_A Transcriptional regulat 33.4 1.6E+02 0.0055 24.8 8.2 18 62-79 90-107 (355)
337 1iy9_A Spermidine synthase; ro 33.2 1E+02 0.0035 25.7 6.7 67 48-136 99-176 (275)
338 1o2d_A Alcohol dehydrogenase, 33.1 1.3E+02 0.0044 26.4 7.7 68 49-137 41-119 (371)
339 3sho_A Transcriptional regulat 33.1 1.6E+02 0.0055 22.3 9.7 84 50-157 41-129 (187)
340 3llv_A Exopolyphosphatase-rela 33.0 1.4E+02 0.0046 21.5 7.4 40 48-88 6-45 (141)
341 3l6u_A ABC-type sugar transpor 32.9 1.3E+02 0.0044 24.2 7.3 74 56-151 19-98 (293)
342 3i65_A Dihydroorotate dehydrog 32.8 31 0.0011 31.4 3.5 60 130-189 333-399 (415)
343 3snr_A Extracellular ligand-bi 32.7 88 0.003 25.9 6.3 86 48-157 135-231 (362)
344 3tdn_A FLR symmetric alpha-bet 32.7 1.1E+02 0.0038 24.8 6.8 57 112-170 47-107 (247)
345 3w01_A Heptaprenylglyceryl pho 32.7 35 0.0012 28.6 3.6 53 110-171 33-87 (235)
346 2v25_A Major cell-binding fact 32.6 1.4E+02 0.005 23.0 7.3 54 46-121 146-201 (259)
347 3oix_A Putative dihydroorotate 32.6 55 0.0019 28.9 5.0 59 129-187 262-327 (345)
348 3oti_A CALG3; calicheamicin, T 32.4 1.2E+02 0.004 26.0 7.3 35 46-80 18-56 (398)
349 3iwp_A Copper homeostasis prot 32.4 1.1E+02 0.0037 26.4 6.8 94 55-170 135-237 (287)
350 2qfm_A Spermine synthase; sper 32.4 2.6E+02 0.0089 24.8 9.5 68 49-135 212-296 (364)
351 1gmx_A GLPE protein; transfera 32.3 1.1E+02 0.0038 21.2 5.9 39 49-87 59-98 (108)
352 1p0k_A Isopentenyl-diphosphate 32.1 79 0.0027 27.4 6.0 46 125-171 235-280 (349)
353 3mz0_A Inositol 2-dehydrogenas 31.7 1.9E+02 0.0064 24.5 8.4 20 154-173 80-99 (344)
354 3g89_A Ribosomal RNA small sub 31.6 1.6E+02 0.0054 24.0 7.6 86 47-155 103-190 (249)
355 2gpy_A O-methyltransferase; st 31.6 1E+02 0.0036 24.3 6.3 67 48-136 78-147 (233)
356 2nli_A Lactate oxidase; flavoe 31.6 2.3E+02 0.008 24.8 9.1 91 61-173 218-316 (368)
357 2e6f_A Dihydroorotate dehydrog 31.4 67 0.0023 27.2 5.4 59 129-188 232-297 (314)
358 3kux_A Putative oxidoreductase 31.0 2.5E+02 0.0084 23.9 9.7 46 142-187 67-116 (352)
359 2nzl_A Hydroxyacid oxidase 1; 30.8 1.6E+02 0.0056 26.2 8.0 90 62-173 242-339 (392)
360 1rd5_A Tryptophan synthase alp 30.7 79 0.0027 26.1 5.6 42 128-171 189-230 (262)
361 1inl_A Spermidine synthase; be 30.7 2.1E+02 0.0071 24.0 8.4 55 48-124 114-174 (296)
362 3iwt_A 178AA long hypothetical 30.5 67 0.0023 24.9 4.8 48 59-123 40-91 (178)
363 1ii5_A SLR1257 protein; membra 30.5 1.6E+02 0.0056 22.2 7.2 50 46-121 114-163 (233)
364 3bbl_A Regulatory protein of L 30.5 2.1E+02 0.0072 23.0 8.7 16 172-187 167-182 (287)
365 8abp_A L-arabinose-binding pro 30.4 1.8E+02 0.0063 23.4 7.9 66 62-149 22-89 (306)
366 3gnn_A Nicotinate-nucleotide p 30.4 71 0.0024 27.7 5.3 70 113-185 179-250 (298)
367 3egc_A Putative ribose operon 30.4 1.2E+02 0.0042 24.4 6.7 18 62-79 28-45 (291)
368 4fxs_A Inosine-5'-monophosphat 30.4 3.2E+02 0.011 25.0 11.4 99 49-170 244-362 (496)
369 3m2t_A Probable dehydrogenase; 30.2 1.6E+02 0.0054 25.3 7.7 106 47-185 4-115 (359)
370 3k9c_A Transcriptional regulat 30.2 1.4E+02 0.0048 24.2 7.0 15 63-77 32-46 (289)
371 3axs_A Probable N(2),N(2)-dime 29.9 95 0.0033 27.8 6.2 51 49-121 78-133 (392)
372 1zx0_A Guanidinoacetate N-meth 29.6 1.2E+02 0.004 24.1 6.3 50 50-120 85-135 (236)
373 2px2_A Genome polyprotein [con 29.5 64 0.0022 27.7 4.7 61 111-186 137-199 (269)
374 4gx0_A TRKA domain protein; me 29.4 1.7E+02 0.0059 26.8 8.2 53 112-170 191-243 (565)
375 3ew7_A LMO0794 protein; Q8Y8U8 29.3 70 0.0024 24.7 4.8 36 49-84 1-36 (221)
376 3l0g_A Nicotinate-nucleotide p 29.3 2.3E+02 0.008 24.5 8.4 65 76-168 212-276 (300)
377 4hkt_A Inositol 2-dehydrogenas 29.2 2.5E+02 0.0087 23.5 9.4 34 153-186 76-111 (331)
378 1twd_A Copper homeostasis prot 29.2 2.2E+02 0.0075 24.1 8.0 91 55-169 97-196 (256)
379 1fy2_A Aspartyl dipeptidase; s 29.1 2.2E+02 0.0075 23.0 8.0 76 48-150 31-121 (229)
380 2hnk_A SAM-dependent O-methylt 29.1 1.8E+02 0.0063 22.9 7.5 40 48-87 85-127 (239)
381 3kke_A LACI family transcripti 29.0 1.2E+02 0.0043 24.7 6.6 15 63-77 36-50 (303)
382 1jub_A Dihydroorotate dehydrog 29.0 88 0.003 26.4 5.7 59 129-187 229-294 (311)
383 3ou2_A SAM-dependent methyltra 29.0 1.2E+02 0.0041 23.2 6.2 41 110-150 104-147 (218)
384 1ws6_A Methyltransferase; stru 29.0 1.5E+02 0.005 21.6 6.4 67 50-136 65-132 (171)
385 3ntv_A MW1564 protein; rossman 28.8 1.1E+02 0.0038 24.3 6.1 65 48-136 95-163 (232)
386 3lvj_C Sulfurtransferase TUSA; 28.7 1.2E+02 0.0041 20.5 5.4 29 50-78 39-67 (82)
387 3r75_A Anthranilate/para-amino 28.7 78 0.0027 30.4 5.7 33 47-79 445-477 (645)
388 2xw6_A MGS, methylglyoxal synt 28.6 1.1E+02 0.0037 23.3 5.5 23 55-77 12-36 (134)
389 2b2c_A Spermidine synthase; be 28.5 1.1E+02 0.0038 26.2 6.3 55 48-124 132-192 (314)
390 3ot5_A UDP-N-acetylglucosamine 28.5 3E+02 0.01 24.0 10.2 44 140-188 318-361 (403)
391 3h5l_A Putative branched-chain 28.4 2.4E+02 0.0082 24.1 8.6 69 49-139 165-244 (419)
392 2esr_A Methyltransferase; stru 28.2 1.4E+02 0.0047 22.2 6.2 67 48-136 54-123 (177)
393 3cea_A MYO-inositol 2-dehydrog 28.1 2.7E+02 0.0091 23.4 9.5 44 142-185 71-118 (346)
394 3gv0_A Transcriptional regulat 28.0 1.2E+02 0.0041 24.6 6.2 15 64-78 32-46 (288)
395 3h5o_A Transcriptional regulat 27.9 2E+02 0.0068 23.9 7.8 20 60-79 80-99 (339)
396 3r2g_A Inosine 5'-monophosphat 27.9 3.2E+02 0.011 24.1 13.4 97 48-170 112-227 (361)
397 2oyr_A UPF0341 protein YHIQ; a 27.6 2.6E+02 0.009 23.2 8.4 57 49-127 111-178 (258)
398 4dzr_A Protein-(glutamine-N5) 27.6 1.9E+02 0.0064 21.9 7.0 29 47-75 53-81 (215)
399 2ho3_A Oxidoreductase, GFO/IDH 27.5 2.7E+02 0.0092 23.2 10.8 43 143-185 63-109 (325)
400 2rgy_A Transcriptional regulat 27.4 1.4E+02 0.0046 24.2 6.5 8 116-123 93-100 (290)
401 1viz_A PCRB protein homolog; s 27.4 1.2E+02 0.0042 25.2 6.1 61 82-170 23-83 (240)
402 1rrm_A Lactaldehyde reductase; 27.4 88 0.003 27.5 5.6 64 49-136 32-108 (386)
403 2c6q_A GMP reductase 2; TIM ba 27.4 96 0.0033 27.2 5.8 55 114-170 133-188 (351)
404 1ye8_A Protein THEP1, hypothet 27.3 2E+02 0.0067 22.1 7.1 73 112-186 98-176 (178)
405 3o74_A Fructose transport syst 27.2 1.6E+02 0.0056 23.2 6.8 12 66-77 26-37 (272)
406 3b0p_A TRNA-dihydrouridine syn 27.1 3.1E+02 0.01 23.7 9.7 38 129-168 185-222 (350)
407 3evz_A Methyltransferase; NYSG 26.9 86 0.003 24.6 5.0 28 48-75 79-106 (230)
408 2o6l_A UDP-glucuronosyltransfe 26.9 1.9E+02 0.0065 21.3 8.0 67 112-187 85-153 (170)
409 3lkb_A Probable branched-chain 26.9 2.6E+02 0.0088 23.6 8.4 85 48-156 143-238 (392)
410 2o07_A Spermidine synthase; st 26.8 1.8E+02 0.006 24.7 7.2 55 48-124 119-179 (304)
411 1thf_D HISF protein; thermophI 26.7 1.8E+02 0.0063 23.3 7.1 41 129-171 63-103 (253)
412 4gmf_A Yersiniabactin biosynth 26.6 64 0.0022 28.6 4.5 33 154-186 84-116 (372)
413 2yzr_A Pyridoxal biosynthesis 26.6 67 0.0023 28.4 4.4 58 128-187 228-292 (330)
414 3cvo_A Methyltransferase-like 26.4 1.2E+02 0.004 24.6 5.7 26 48-73 51-76 (202)
415 2l69_A Rossmann 2X3 fold prote 26.4 1.8E+02 0.0063 20.9 6.7 41 48-88 77-117 (134)
416 3hz7_A Uncharacterized protein 26.2 1.4E+02 0.0049 20.5 5.4 30 50-79 31-60 (87)
417 3o9z_A Lipopolysaccaride biosy 25.9 1.3E+02 0.0045 25.5 6.2 46 141-186 71-120 (312)
418 1vrd_A Inosine-5'-monophosphat 25.7 1.6E+02 0.0055 26.7 7.2 69 79-170 236-305 (494)
419 3dm5_A SRP54, signal recogniti 25.7 2.1E+02 0.0071 26.1 7.8 12 111-122 180-191 (443)
420 3mn1_A Probable YRBI family ph 25.5 2.3E+02 0.0077 21.7 7.3 53 131-186 54-106 (189)
421 3tb6_A Arabinose metabolism tr 25.4 2.6E+02 0.0088 22.3 9.5 17 62-78 35-51 (298)
422 3zwt_A Dihydroorotate dehydrog 25.4 1E+02 0.0034 27.3 5.5 59 129-187 285-350 (367)
423 1jr3_D DNA polymerase III, del 25.4 2.7E+02 0.0093 23.3 8.3 77 111-187 74-156 (343)
424 3paj_A Nicotinate-nucleotide p 25.3 3.4E+02 0.012 23.6 9.2 91 50-168 204-300 (320)
425 2hsg_A Glucose-resistance amyl 25.2 2.8E+02 0.0097 22.8 8.3 19 61-79 79-97 (332)
426 3tlq_A Regulatory protein YDIV 25.2 8.4 0.00029 31.8 -1.6 88 73-182 144-240 (242)
427 3e05_A Precorrin-6Y C5,15-meth 25.1 2.3E+02 0.0078 21.6 9.3 76 48-148 64-141 (204)
428 3kzp_A LMO0111 protein, putati 25.1 16 0.00055 29.5 0.2 89 63-173 132-233 (235)
429 1xj5_A Spermidine synthase 1; 25.1 2.3E+02 0.0077 24.4 7.7 69 48-137 144-223 (334)
430 3m4x_A NOL1/NOP2/SUN family pr 25.0 1.5E+02 0.005 27.1 6.7 52 49-122 131-184 (456)
431 3khj_A Inosine-5-monophosphate 24.9 1.7E+02 0.0058 25.7 6.9 57 111-170 115-172 (361)
432 1nvm_A HOA, 4-hydroxy-2-oxoval 24.9 1.4E+02 0.0047 26.0 6.3 60 124-185 65-129 (345)
433 2dri_A D-ribose-binding protei 24.9 2.6E+02 0.0089 22.2 9.6 72 56-150 12-90 (271)
434 3i6v_A Periplasmic His/Glu/Gln 24.7 2.2E+02 0.0074 21.9 7.0 49 46-121 105-153 (232)
435 3abi_A Putative uncharacterize 24.7 2.4E+02 0.0081 24.3 7.8 42 45-88 13-54 (365)
436 4fzr_A SSFS6; structural genom 24.7 2.1E+02 0.0072 24.3 7.5 56 129-188 311-368 (398)
437 3iwp_A Copper homeostasis prot 24.6 2.2E+02 0.0075 24.5 7.3 90 72-185 39-151 (287)
438 4gqa_A NAD binding oxidoreduct 24.6 3.4E+02 0.012 23.5 9.0 45 141-185 95-143 (412)
439 3eey_A Putative rRNA methylase 24.5 93 0.0032 23.7 4.6 53 49-123 48-103 (197)
440 2bdq_A Copper homeostasis prot 24.4 2.1E+02 0.0072 23.7 7.0 95 55-171 100-207 (224)
441 3ovp_A Ribulose-phosphate 3-ep 24.4 86 0.003 25.7 4.6 75 112-187 29-110 (228)
442 4e38_A Keto-hydroxyglutarate-a 24.4 3E+02 0.01 22.7 9.9 75 68-169 123-200 (232)
443 1vmd_A MGS, methylglyoxal synt 24.4 1.9E+02 0.0066 23.0 6.5 45 110-159 95-144 (178)
444 3qja_A IGPS, indole-3-glycerol 24.3 2.3E+02 0.008 23.8 7.5 56 129-186 102-159 (272)
445 3rhb_A ATGRXC5, glutaredoxin-C 24.1 1.8E+02 0.0062 20.1 5.9 71 59-150 7-81 (113)
446 2qjg_A Putative aldolase MJ040 23.9 2.1E+02 0.0073 23.3 7.1 54 111-170 177-236 (273)
447 1jr2_A Uroporphyrinogen-III sy 23.9 1.1E+02 0.0037 25.5 5.3 110 47-186 156-280 (286)
448 4fyk_A Deoxyribonucleoside 5'- 23.7 1.3E+02 0.0044 23.3 5.2 70 113-187 68-141 (152)
449 3c0k_A UPF0064 protein YCCW; P 23.7 2.1E+02 0.0071 25.0 7.3 54 49-121 244-301 (396)
450 3evn_A Oxidoreductase, GFO/IDH 23.7 87 0.003 26.6 4.7 45 142-186 67-115 (329)
451 3sr7_A Isopentenyl-diphosphate 23.6 1.5E+02 0.0052 26.2 6.4 41 129-170 266-306 (365)
452 1t0b_A THUA-like protein; treh 23.6 75 0.0026 26.5 4.1 32 48-79 7-52 (252)
453 1k1e_A Deoxy-D-mannose-octulos 23.5 2.4E+02 0.0081 21.2 9.8 69 113-184 7-93 (180)
454 3ox4_A Alcohol dehydrogenase 2 23.5 94 0.0032 27.5 5.0 64 49-136 32-108 (383)
455 3hix_A ALR3790 protein; rhodan 23.5 1.9E+02 0.0063 20.0 6.9 39 50-88 54-93 (106)
456 1qpo_A Quinolinate acid phosph 23.5 1.9E+02 0.0064 24.7 6.7 55 129-186 182-236 (284)
457 2fep_A Catabolite control prot 23.4 2.9E+02 0.0099 22.2 9.1 15 64-78 38-52 (289)
458 3f4k_A Putative methyltransfer 23.3 81 0.0028 25.1 4.2 65 50-137 71-138 (257)
459 3db2_A Putative NADPH-dependen 23.3 2.9E+02 0.01 23.4 8.1 32 153-184 79-112 (354)
460 3sg0_A Extracellular ligand-bi 23.3 1.8E+02 0.0062 24.3 6.6 96 48-168 159-265 (386)
461 2y7i_A STM4351; arginine-bindi 23.2 2.4E+02 0.0082 21.2 7.0 51 47-121 111-161 (229)
462 3g1w_A Sugar ABC transporter; 23.2 2.9E+02 0.01 22.2 8.4 68 62-151 24-95 (305)
463 2agk_A 1-(5-phosphoribosyl)-5- 23.2 1.3E+02 0.0045 25.0 5.6 68 115-183 173-257 (260)
464 2otd_A Glycerophosphodiester p 23.1 2.9E+02 0.01 22.2 7.9 51 114-171 185-235 (247)
465 1h1y_A D-ribulose-5-phosphate 23.0 1.7E+02 0.0058 23.5 6.1 68 116-186 38-110 (228)
466 1jub_A Dihydroorotate dehydrog 23.0 2.1E+02 0.007 24.0 6.9 58 111-170 117-191 (311)
467 1vs1_A 3-deoxy-7-phosphoheptul 23.0 2.7E+02 0.0093 23.5 7.6 74 111-186 171-271 (276)
468 1zgh_A Methionyl-tRNA formyltr 23.0 66 0.0023 27.3 3.7 43 46-88 28-73 (260)
469 3e61_A Putative transcriptiona 22.9 1.3E+02 0.0045 24.0 5.5 70 56-151 19-95 (277)
470 1wxx_A TT1595, hypothetical pr 22.9 2.7E+02 0.0091 24.1 7.9 55 48-121 231-287 (382)
471 3e9m_A Oxidoreductase, GFO/IDH 22.8 1.7E+02 0.0058 24.8 6.4 34 153-186 80-115 (330)
472 2hqb_A Transcriptional activat 22.8 3.2E+02 0.011 22.4 8.4 18 61-78 26-43 (296)
473 3ajd_A Putative methyltransfer 22.8 3.1E+02 0.011 22.3 8.0 54 49-121 109-164 (274)
474 1ls1_A Signal recognition part 22.7 3.4E+02 0.012 22.7 9.5 31 48-78 126-159 (295)
475 3clk_A Transcription regulator 22.7 1.8E+02 0.0063 23.4 6.4 14 65-78 31-44 (290)
476 1iow_A DD-ligase, DDLB, D-ALA\ 22.6 51 0.0018 27.2 2.9 33 49-81 3-43 (306)
477 3oa2_A WBPB; oxidoreductase, s 22.6 1.5E+02 0.0053 25.1 6.1 46 141-186 72-121 (318)
478 3l49_A ABC sugar (ribose) tran 22.6 1.7E+02 0.0057 23.5 6.1 17 62-78 25-41 (291)
479 3m6w_A RRNA methylase; rRNA me 22.6 1.3E+02 0.0043 27.6 5.7 52 49-122 127-179 (464)
480 4htf_A S-adenosylmethionine-de 22.5 1.7E+02 0.0058 23.7 6.2 68 48-137 90-161 (285)
481 2ioy_A Periplasmic sugar-bindi 22.5 3E+02 0.01 22.0 9.1 71 56-149 12-89 (283)
482 2fvy_A D-galactose-binding per 22.5 3E+02 0.01 22.0 8.2 68 61-151 21-93 (309)
483 1p9l_A Dihydrodipicolinate red 22.5 3.3E+02 0.011 22.4 8.2 75 49-150 1-77 (245)
484 3cni_A Putative ABC type-2 tra 22.4 1.1E+02 0.0036 23.0 4.5 41 46-88 8-51 (156)
485 2b7n_A Probable nicotinate-nuc 22.4 2.1E+02 0.007 24.1 6.7 55 129-185 169-223 (273)
486 3qvq_A Phosphodiesterase OLEI0 22.4 3.1E+02 0.011 22.2 8.1 61 114-183 188-248 (252)
487 1o4u_A Type II quinolic acid p 22.4 1E+02 0.0036 26.4 4.8 69 76-169 198-266 (285)
488 1gud_A ALBP, D-allose-binding 22.3 3E+02 0.01 22.0 8.5 72 56-150 12-92 (288)
489 3dzc_A UDP-N-acetylglucosamine 22.3 2.7E+02 0.0092 24.2 7.8 44 140-188 324-367 (396)
490 2gk3_A Putative cytoplasmic pr 22.3 80 0.0027 26.2 4.0 17 63-79 44-60 (256)
491 1mzh_A Deoxyribose-phosphate a 22.3 1.5E+02 0.0052 24.0 5.7 56 111-166 143-199 (225)
492 4eyg_A Twin-arginine transloca 22.3 3.3E+02 0.011 22.4 9.5 78 49-149 140-230 (368)
493 3fwz_A Inner membrane protein 22.2 2.3E+02 0.0077 20.5 6.3 39 49-88 8-46 (140)
494 1vhc_A Putative KHG/KDPG aldol 22.2 3.1E+02 0.011 22.2 10.0 69 111-184 40-108 (224)
495 3bo9_A Putative nitroalkan dio 22.1 3.7E+02 0.013 22.9 8.6 53 110-171 99-151 (326)
496 1q6o_A Humps, 3-keto-L-gulonat 22.0 1E+02 0.0034 24.6 4.5 57 113-170 130-190 (216)
497 3q2i_A Dehydrogenase; rossmann 22.0 3.1E+02 0.011 23.2 8.0 43 143-185 76-122 (354)
498 2fli_A Ribulose-phosphate 3-ep 22.0 2.8E+02 0.0097 21.6 8.4 58 112-170 130-197 (220)
499 1jdq_A TM006 protein, hypothet 22.0 1.3E+02 0.0045 21.3 4.6 29 50-78 55-83 (98)
500 2yxd_A Probable cobalt-precorr 22.0 2.3E+02 0.008 20.6 11.4 74 47-149 56-131 (183)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.96 E-value=4.7e-29 Score=198.39 Aligned_cols=120 Identities=28% Similarity=0.555 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++|||||||++.+|..++.+|+..||. |.++.+|.+|++.+ ....||+||+|+.||+
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~---------------------~~~~~DlillD~~MP~ 69 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML---------------------KKGDFDFVVTDWNMPG 69 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH---------------------HHHCCSEEEEESCCSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHH---------------------HhCCCCEEEEcCCCCC
Confidence 4679999999999999999999999996 67899999999998 5568999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|||++++++||.. ..+++|||++|++.+.+...+++++||++||.|||+.++|...+.++++
T Consensus 70 mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 70 MQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp SCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 9999999999965 4578999999999999999999999999999999999999999999875
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.92 E-value=3.1e-24 Score=164.28 Aligned_cols=118 Identities=34% Similarity=0.514 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l---------------------~~~~~dlvllD~~~p~~~g 61 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---------------------SEFTPDLIVLXIMMPVMDG 61 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------TTBCCSEEEECSCCSSSCH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeccCCCCcH
Confidence 4899999999999999999999999999999999999998 5678999999999999999
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+++++++|.. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.++++
T Consensus 62 ~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp HHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 9999999864 3578999999999999999999999999999999999999999998874
No 3
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.92 E-value=2.2e-26 Score=180.51 Aligned_cols=114 Identities=19% Similarity=0.265 Sum_probs=102.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+|||||||++.++..++.+|+..||+|. ++.+|.+|++++ ....||+||+|++||+
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~---------------------~~~~~DlvllDi~mP~ 65 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIA---------------------RKGQFDIAIIDVNLDG 65 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHH---------------------HHCCSSEEEECSSSSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---------------------HhCCCCEEEEecCCCC
Confidence 467999999999999999999999999986 789999999999 5678999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|||+++++++|. .++|||++|++++.... .++|+++||.|||+.++|...+.++++
T Consensus 66 ~~G~el~~~lr~---~~ipvI~lTa~~~~~~~---~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 66 EPSYPVADILAE---RNVPFIFATGYGSKGLD---TRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CCSHHHHHHHHH---TCCSSCCBCTTCTTSCC---SSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred CCHHHHHHHHHc---CCCCEEEEecCccHHHH---HhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 999999999995 46899999999876543 468999999999999999998877653
No 4
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.92 E-value=1.1e-23 Score=163.56 Aligned_cols=126 Identities=20% Similarity=0.393 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.++||||||++..+..+..+|+..|| .|..+.++.+|++.+... ......||+||+|+.||++
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~----------------~~~~~~~dlvllD~~mp~~ 65 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKEL----------------TSKGENYNMIFMDVQMPKV 65 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH----------------HHHTCCCSEEEECSCCSSS
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHH----------------HhcCCCCCEEEEeCCCCCC
Confidence 46899999999999999999998897 488899999999988310 0012579999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|++++++||....+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++...
T Consensus 66 ~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 66 DGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp CHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred ChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 999999999964445789999999999999999999999999999999999999999987543
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.91 E-value=1.2e-23 Score=163.96 Aligned_cols=121 Identities=27% Similarity=0.447 Sum_probs=112.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvl~D~~lp~~~ 62 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQI---------------------YKNLPDALICDVLLPGID 62 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEEESCCSSSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------HhCCCCEEEEeCCCCCCC
Confidence 46899999999999999999999999999999999999998 556799999999999999
Q ss_pred HHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|++++++||.. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+.
T Consensus 63 g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 63 GYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp HHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999964 346899999999999999999999999999999999999999999998654
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.91 E-value=2.9e-23 Score=158.13 Aligned_cols=117 Identities=27% Similarity=0.485 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlii~D~~~p~~~g 61 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV---------------------EELQPDLILLDIMLPNKDG 61 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HTTCCSEEEEETTSTTTHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH---------------------hhCCCCEEEEeCCCCCCCH
Confidence 4899999999999999999999999999999999999998 5678999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++++++|.. ..+|||++|++.+.....++++.|+++||.||++.++|...+.+++++
T Consensus 62 ~~~~~~lr~~--~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 62 VEVCREVRKK--YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp HHHHHHHHTT--CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc--CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 9999999953 478999999999999999999999999999999999999999998753
No 7
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.91 E-value=5.4e-23 Score=158.32 Aligned_cols=122 Identities=28% Similarity=0.531 Sum_probs=110.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..++||||||++..+..++.+|+..||. +..+.++.++++.+. ....||+||+|+.||+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~--------------------~~~~~dlvi~D~~~p~ 63 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLD--------------------ANADTKVLITDWNMPE 63 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH--------------------HCTTCCEEEECSCCSS
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHH--------------------hCCCCCEEEEeCCCCC
Confidence 3578999999999999999999999995 889999999999872 3447999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|+++++++|.. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++..
T Consensus 64 ~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 64 MNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp SCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999964 34789999999999999999999999999999999999999999999854
No 8
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.90 E-value=9e-23 Score=160.42 Aligned_cols=122 Identities=33% Similarity=0.581 Sum_probs=107.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
...++||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvl~D~~mp~ 70 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAM---------------------AEEDYDAVIVDLHMPG 70 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHH---------------------HHSCCSEEEEESCCSS
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCC
Confidence 3467999999999999999999999999999999999999998 4567999999999999
Q ss_pred CCHHHHHHHHhhc---CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVS---SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~---~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|+++++++|.. ..+.+|||++|++.+.+...++++.|+++||.||++.++|...+.++...
T Consensus 71 ~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 71 MNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 9999999999842 34678999999999999999999999999999999999999999998754
No 9
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.90 E-value=2.7e-22 Score=153.28 Aligned_cols=120 Identities=24% Similarity=0.360 Sum_probs=111.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+..+|...||.+..+.++.++++.+ ....||+||+|+.||+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvi~D~~l~~~~ 61 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA---------------------PDVRNGVLVTDLRMPDMS 61 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHG---------------------GGCCSEEEEEECCSTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH---------------------hcCCCCEEEEECCCCCCC
Confidence 46899999999999999999999999999999999999988 556799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|++++++++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++...
T Consensus 62 g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 62 GVELLRNLGDL-KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp HHHHHHHHHHT-TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 99999999853 47899999999999999999999999999999999999999999988643
No 10
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.90 E-value=3.7e-22 Score=158.56 Aligned_cols=125 Identities=32% Similarity=0.520 Sum_probs=114.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~dlii~D~~l~~~ 64 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFL---------------------SLTRPDLIISDVLMPEM 64 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH---------------------TTCCCSEEEEESCCSSS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------HhCCCCEEEEeCCCCCC
Confidence 357999999999999999999999999999999999999999 56789999999999999
Q ss_pred CHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 127 TGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 127 ~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
+|+++++.||... .+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++.+....
T Consensus 65 ~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 131 (154)
T 3gt7_A 65 DGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRT 131 (154)
T ss_dssp CHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999653 47899999999999999999999999999999999999999999998765443
No 11
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.89 E-value=3.1e-23 Score=170.10 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=110.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+++||||||++..+..+..+|...||.|.++.++.+|++.+ ....||+||+|+.||++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvl~D~~lp~~ 64 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLA---------------------GAEKFEFITVXLHLGND 64 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH---------------------TTSCCSEEEECSEETTE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hhCCCCEEEEeccCCCc
Confidence 457999999999999999999999999999999999999998 56789999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+|+++++++|.. .+.+|||++|++.+.+...++++.|+++||.||++.++|...+.+++.
T Consensus 65 ~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 65 SGLSLIAPLCDL-QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp ESHHHHHHHHHH-CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred cHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 999999999964 478999999999999999999999999999999999999988877654
No 12
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.89 E-value=3.2e-22 Score=153.42 Aligned_cols=122 Identities=27% Similarity=0.396 Sum_probs=105.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+.+||||||++..+..+..+|...||.+..+.++.+|++.+ ....||+||+|+.||+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~d~~l~~ 63 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL---------------------GGFTPDLMICDIAMPR 63 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH---------------------TTCCCSEEEECCC---
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH---------------------hcCCCCEEEEecCCCC
Confidence 3467999999999999999999999999999999999999998 5678999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC-ChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV-RLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~~l~~~ 189 (241)
++|+++++++|. ..+.+|||++|++.+.....++++.|+++||.||+ +.++|...+.+++.+.
T Consensus 64 ~~g~~~~~~l~~-~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 64 MNGLKLLEHIRN-RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp --CHHHHHHHHH-TTCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHh-cCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999995 45789999999999999999999999999999999 9999999999998653
No 13
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.89 E-value=3.8e-22 Score=150.67 Aligned_cols=117 Identities=21% Similarity=0.388 Sum_probs=108.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+...|...||.|..+.++.+|++.+ ....||+||+|+.||+++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~---------------------~~~~~dlil~D~~l~~~~g 59 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL---------------------NEHIPDIAIVDLGLPDEDG 59 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEECSCCSSSCH
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH---------------------hccCCCEEEEecCCCCCCH
Confidence 4799999999999999999999999999999999999998 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+++++.++. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.++++
T Consensus 60 ~~~~~~l~~-~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 60 LSLIRRWRS-NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp HHHHHHHHH-TTCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 999999995 3478999999999999999999999999999999999999999998875
No 14
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.89 E-value=1.6e-22 Score=157.29 Aligned_cols=124 Identities=20% Similarity=0.317 Sum_probs=112.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccC-CCccEEEEeCCCC-
Q 026247 48 TFHVLAVDDSLIDRKILENLLRV-SSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE-SRVNLIMTDYCMP- 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~-~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVllD~~mp- 124 (241)
+.+||||||++..+..++.+|.. .||+|..+.++.+|++.+ .. ..||+||+|+.||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l---------------------~~~~~~dlvi~D~~l~~ 62 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIF---------------------KDLDSITLIIMDIAFPV 62 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTT---------------------TTCCCCSEEEECSCSSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHH---------------------hcCCCCcEEEEeCCCCC
Confidence 57999999999999999999998 899999999999999988 55 7899999999999
Q ss_pred CCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 125 GMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 125 ~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
+++|++++++||.. ..+.+|||++|++.+.+...++++.|+++||.||++.++|...+.+++++....
T Consensus 63 ~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 63 EKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp HHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred CCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 99999999999963 457899999999999999999999999999999999999999999999765443
No 15
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.89 E-value=3.7e-22 Score=151.83 Aligned_cols=118 Identities=26% Similarity=0.414 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|...||.|..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~---------------------~~~~~dlvl~D~~l~~~~g 62 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV---------------------TKERPDLVLLDMKIPGMDG 62 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH---------------------HHHCCSEEEEESCCTTCCH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH---------------------hccCCCEEEEecCCCCCCH
Confidence 5899999999999999999998999999999999999998 4457999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++++++++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+
T Consensus 63 ~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 63 IEILKRMKVI-DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp HHHHHHHHHH-CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHh-CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999854 4789999999999999999999999999999999999999999998753
No 16
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.89 E-value=6.3e-22 Score=152.90 Aligned_cols=125 Identities=28% Similarity=0.416 Sum_probs=111.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
...+||||||++..+..+..+|+..||.|..+.++.+++..+. ....||+||+|+.||++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~--------------------~~~~~dlvi~D~~l~~~ 65 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLH--------------------YQKRIGLMITDLRMQPE 65 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHH--------------------HCTTEEEEEECSCCSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHH--------------------hCCCCcEEEEeccCCCC
Confidence 3579999999999999999999999999999999999999882 23349999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
+|++++++||....+.+|||++|+..+.....++++.|+++||.||++.++|...+.++..+...
T Consensus 66 ~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 66 SGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp CHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 99999999995435789999999999999999999999999999999999999999999876543
No 17
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.89 E-value=8.5e-22 Score=155.33 Aligned_cols=126 Identities=21% Similarity=0.351 Sum_probs=112.8
Q ss_pred cccCCccEEEEEeCCHHHHHHHHHHHhhcC--cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 43 QQQQETFHVLAVDDSLIDRKILENLLRVSS--YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 43 ~~~~~~~~VLIVDDd~~~~~~l~~~L~~~g--~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
.....+++||||||++..+..+..+|...| +.|..+.++.+|++.+ ....||+||+|
T Consensus 15 ~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l---------------------~~~~~dlii~D 73 (150)
T 4e7p_A 15 VPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLL---------------------EKESVDIAILD 73 (150)
T ss_dssp -----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH---------------------TTSCCSEEEEC
T ss_pred CCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHh---------------------hccCCCEEEEe
Confidence 344457899999999999999999999887 7899999999999998 56779999999
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 121 YCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 121 ~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+.||+++|+++++.||. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+..
T Consensus 74 ~~l~~~~g~~~~~~l~~-~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 74 VEMPVKTGLEVLEWIRS-EKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp SSCSSSCHHHHHHHHHH-TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcHHHHHHHHHH-hCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 99999999999999995 4578999999999999999999999999999999999999999999997543
No 18
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.89 E-value=5.2e-22 Score=153.33 Aligned_cols=119 Identities=21% Similarity=0.325 Sum_probs=110.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvl~D~~l~~~~ 61 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKI---------------------ENEFFNLALFXIKLPDME 61 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEECSBCSSSB
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH---------------------hcCCCCEEEEecCCCCCc
Confidence 46899999999999999999998999999999999999998 456799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|++++++++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+
T Consensus 62 g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 62 GTELLEKAHKL-RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp HHHHHHHHHHH-CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhh-CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 99999999854 4689999999999999999999999999999999999999999988753
No 19
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.88 E-value=4.8e-22 Score=150.74 Aligned_cols=119 Identities=26% Similarity=0.437 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~---------------------~~~~~dlvi~D~~l~~~~g 60 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIA---------------------RENKPDLILMDIQLPEISG 60 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH---------------------HHHCCSEEEEESBCSSSBH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCCH
Confidence 4799999999999999999999999999999999999988 4457999999999999999
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++++++++.. ..+.+|||++|++........+++.|+++||.||++.++|...+.+++.+
T Consensus 61 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 61 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp HHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999964 34689999999998888899999999999999999999999999998854
No 20
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.88 E-value=1.6e-22 Score=157.03 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=112.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC--
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-- 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-- 125 (241)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~D~~l~~~~ 64 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQ---------------------ISDDAIGMIIEAHLEDKK 64 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSC---------------------CCTTEEEEEEETTGGGBT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH---------------------hccCCCEEEEeCcCCCCC
Confidence 56999999999999999999999999999999999999887 5677999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
++|+++++++|.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+..
T Consensus 65 ~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 65 DSGIELLETLVKR-GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp THHHHHHHHHHHT-TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhC-CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999954 488999999999999999999999999999999999999999999986543
No 21
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.88 E-value=1.4e-21 Score=149.10 Aligned_cols=120 Identities=26% Similarity=0.513 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..++||||||++..+..+..+|...|| .+..+.++.++++.+ ....||+||+|+.||+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~---------------------~~~~~dlvi~D~~l~~ 61 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL---------------------QAGGYGFVISDWNMPN 61 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH---------------------TTCCCCEEEEESCCSS
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH---------------------HhcCCCEEEEeCCCCC
Confidence 356899999999999999999999999 789999999999998 5567999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++|+++++++|.. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.
T Consensus 62 ~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 62 MDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp SCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 9999999999953 3568999999999999999999999999999999999999999988764
No 22
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.88 E-value=5.9e-22 Score=151.48 Aligned_cols=120 Identities=22% Similarity=0.455 Sum_probs=110.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.++||||||++..+..+..+|...|| .+..+.++.++++.+ ....||+||+|+.||++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~---------------------~~~~~dlvl~D~~l~~~ 64 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIM---------------------AQNPHHLVISDFNMPKM 64 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHH---------------------HTSCCSEEEECSSSCSS
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHH---------------------HcCCCCEEEEeCCCCCC
Confidence 46899999999999999999998899 788999999999998 55679999999999999
Q ss_pred CHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|+++++++|.. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++..
T Consensus 65 ~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999864 24789999999999999999999999999999999999999999988753
No 23
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.88 E-value=5.8e-22 Score=149.69 Aligned_cols=117 Identities=24% Similarity=0.402 Sum_probs=107.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+++||||||++..+..+..+|+..||. +..+.++.+|++.+ ....||+||+|+.||++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~---------------------~~~~~dlil~D~~l~~~ 60 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKY---------------------KELKPDIVTMDITMPEM 60 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---------------------HHHCCSEEEEECSCGGG
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHH---------------------HhcCCCEEEEeCCCCCC
Confidence 358999999999999999999999999 55899999999998 44579999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+|++++++++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++
T Consensus 61 ~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 61 NGIDAIKEIMKI-DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CHHHHHHHHHHH-CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 999999999854 47899999999999999999999999999999999999999998764
No 24
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.88 E-value=8.5e-22 Score=152.31 Aligned_cols=122 Identities=18% Similarity=0.364 Sum_probs=108.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC--cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS--YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g--~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++||||||++..+..+..+|+..| +.+..+.++.++++.+ ....||+||+|+.||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~---------------------~~~~~dlvilD~~lp~ 61 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLI---------------------EEYNPNVVILDIEMPG 61 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHH---------------------HHHCCSEEEECSSCSS
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHH---------------------hhcCCCEEEEecCCCC
Confidence 4689999999999999999999876 5677899999999998 4457999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
++|++++++|+. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+...
T Consensus 62 ~~g~~~~~~l~~-~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 62 MTGLEVLAEIRK-KHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp SCHHHHHHHHHH-TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHH-HCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 999999999995 45789999999999999999999999999999999999999999999865433
No 25
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.88 E-value=1e-21 Score=148.73 Aligned_cols=116 Identities=24% Similarity=0.410 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|...||.+..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvi~d~~l~~~~g 61 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM---------------------QNQSVDLILLDINLPDENG 61 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEEESCCSSSCH
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCCh
Confidence 4899999999999999999998999999999999999988 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+++++.++. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.++++
T Consensus 62 ~~~~~~l~~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 62 LMLTRALRE--RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp HHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 999999995 478999999999999999999999999999999999999999988875
No 26
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.88 E-value=3.8e-22 Score=153.54 Aligned_cols=122 Identities=17% Similarity=0.300 Sum_probs=109.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.++||||||++..+..+..+|...||.+. .+.++.+|++.+ ....||+||+|+.||++
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~---------------------~~~~~dlii~d~~l~~~ 59 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV---------------------ETLKPDIVIIDVDIPGV 59 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHH---------------------HHHCCSEEEEETTCSSS
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHH---------------------HhcCCCEEEEecCCCCC
Confidence 36899999999999999999999999997 899999999998 45679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
+|+++++++|. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+...
T Consensus 60 ~g~~~~~~l~~-~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 60 NGIQVLETLRK-RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp CHHHHHHHHHH-TTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred ChHHHHHHHHh-cCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 99999999995 45789999999999999999999999999999999999999999999976544
No 27
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.88 E-value=1.5e-21 Score=154.07 Aligned_cols=132 Identities=23% Similarity=0.424 Sum_probs=112.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.++||||||++..+..+..+|...|+ .|..+.++.+|++.+.... .. .......||+||+|+.||+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~------~~------~~~~~~~~dliilD~~l~~ 71 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDD------KS------GRVSAGRAQLVLLDLNLPD 71 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTT------SS------SGGGTTCBEEEEECSBCSS
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccc------cc------cccccCCCCEEEEeCCCCC
Confidence 57999999999999999999999998 8999999999999982100 00 0002567999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
++|++++++||.. ..+.+|||++|+..+.....++++.|+++||.||++.++|...+.++......
T Consensus 72 ~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3heb_A 72 MTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSV 138 (152)
T ss_dssp SBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999964 45789999999999999999999999999999999999999999998765433
No 28
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.88 E-value=7.5e-22 Score=151.58 Aligned_cols=121 Identities=21% Similarity=0.369 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVS-SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~-g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++||||||++..+..+..+|... ||.+. .+.++.++++.+ ....||+||+|+.||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~---------------------~~~~~dlvllD~~l~~~ 61 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQML---------------------EEKRPDILLLDIIMPHL 61 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH---------------------HHHCCSEEEEESCCSSS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH---------------------hcCCCCEEEEecCCCCC
Confidence 58999999999999999999877 88875 799999999998 44579999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+|++++++++....+.+|||++|++.+.....++++.|+++||.||++.++|...+.++++...
T Consensus 62 ~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 125 (130)
T 1dz3_A 62 DGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTT 125 (130)
T ss_dssp CHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 9999999999643467899999999999999999999999999999999999999999886543
No 29
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.88 E-value=2.4e-21 Score=152.83 Aligned_cols=128 Identities=25% Similarity=0.380 Sum_probs=109.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++||||||++..+..++.+|+..|+ .|..+.++.++++.+.... .......||+||+|+.||
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--------------~~~~~~~~dlillD~~lp 72 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQG--------------EYENSPRPNLILLDLNLP 72 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCG--------------GGTTCCCCSEEEECSCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcc--------------ccccCCCCCEEEEeCCCC
Confidence 357899999999999999999998886 7889999999999982000 000024799999999999
Q ss_pred CCCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 125 GMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 125 ~~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++|++++++||... .+.+|||++|+..+.....++++.|+++||.||++.++|...++++++.
T Consensus 73 ~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 73 KKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp SSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999642 3689999999999999999999999999999999999999999988753
No 30
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.88 E-value=1.1e-21 Score=155.21 Aligned_cols=121 Identities=21% Similarity=0.326 Sum_probs=112.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
....+||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~D~~l~~ 70 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLL---------------------ASREVDLVISAAHLPQ 70 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHH---------------------HHSCCSEEEEESCCSS
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHH---------------------HcCCCCEEEEeCCCCc
Confidence 3467999999999999999999999999999999999999998 5567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC-CcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG-AEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G-a~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|++++++||. ..+.+|||++|++.+.....++++.| +++||.||++.++|...+.+++..
T Consensus 71 ~~g~~~~~~l~~-~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 71 MDGPTLLARIHQ-QYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SCHHHHHHHHHH-HCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHh-HCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999996 45789999999999999999999999 999999999999999999998864
No 31
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.88 E-value=4.9e-22 Score=151.77 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=108.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlii~D~~l~~~~ 61 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAM---------------------STRGYDAVFIDLNLPDTS 61 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHH---------------------HHSCCSEEEEESBCSSSB
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHH---------------------HhcCCCEEEEeCCCCCCC
Confidence 56899999999999999999999999999999999999998 556799999999999999
Q ss_pred HHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++++|.. ..+.+|||++|++.+... ..++..|+++||.||++.++|...+....+..
T Consensus 62 g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 62 GLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp HHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999999964 268899999999988888 88999999999999999999999999887543
No 32
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.88 E-value=6.8e-22 Score=165.60 Aligned_cols=135 Identities=21% Similarity=0.326 Sum_probs=108.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
....+||||||++..+..+..+|+..|| .|..+.++.+|++.+.......... .......||+||+|+.||
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~--------~~~~~~~~dlillD~~lp 130 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQ--------GSVDKLPFDYIFMDCQMP 130 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHH--------TCSSCCSCSEEEEESCCS
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhccccccc--------ccccCCCCCEEEEcCCCC
Confidence 4567999999999999999999999998 8999999999999983100000000 000124799999999999
Q ss_pred CCCHHHHHHHHhhc---CCCCCcEEEEecCC-ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 125 GMTGYDLLKRLKVS---SWKDVPVVVMSSEN-VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 125 ~~~G~el~~~lr~~---~~~~~pII~lsa~~-~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+++|++++++||.. ..+.+|||++|++. +.....++++.|+++||.||++ +|...+.+++....
T Consensus 131 ~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 131 EMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp SSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred CCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 99999999999964 24789999999998 7788899999999999999998 89999999986543
No 33
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=7.5e-22 Score=169.23 Aligned_cols=122 Identities=25% Similarity=0.443 Sum_probs=113.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
...++||||||++..+..+..+|+..||+|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvllD~~lp~ 79 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA---------------------RETRPDAVILDVXMPG 79 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHHCCSEEEEESCCSS
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCC
Confidence 3467999999999999999999999999999999999999998 4567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
++|++++++||.. .+.+|||++|++.+.....+++++||++||.||++.++|...+.+++++.
T Consensus 80 ~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 80 MDGFGVLRRLRAD-GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp SCHHHHHHHHHHT-TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999954 57899999999999999999999999999999999999999999998643
No 34
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.88 E-value=1.7e-21 Score=147.77 Aligned_cols=117 Identities=26% Similarity=0.479 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~---------------------~~~~~dlvi~D~~l~~~~ 61 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL---------------------SEYDINLVIMDINLPGKN 61 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEECSSCSSSC
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHH---------------------hcCCCCEEEEcCCCCCCC
Confidence 45899999999999999999998999999999999999998 456799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|++++++++.. +.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.
T Consensus 62 g~~~~~~l~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 62 GLLLARELREQ--ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp HHHHHHHHHHH--CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 99999999964 68999999999999999999999999999999999999999988775
No 35
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.88 E-value=8.2e-23 Score=180.74 Aligned_cols=118 Identities=21% Similarity=0.262 Sum_probs=108.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-C
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-G 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~ 125 (241)
..+||||||++.++..+..+|+..||.|. .+.+|.+|++.+ ....||+||+|+.|| +
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~---------------------~~~~~dlvl~D~~MPd~ 218 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAV---------------------TRRTPGLVLADIQLADG 218 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---------------------HHCCCSEEEEESCCTTS
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHH---------------------HhCCCCEEEEcCCCCCC
Confidence 45899999999999999999999999999 999999999999 566799999999999 8
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
|||+++++.||... .+|||++|++. +...+++++|+++||.|||+.++|...+.+++....
T Consensus 219 mdG~e~~~~ir~~~--~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 219 SSGIDAVKDILGRM--DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp CCTTTTTHHHHHHT--TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhcC--CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 99999999999654 89999999985 456779999999999999999999999999996543
No 36
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.88 E-value=1.3e-21 Score=147.25 Aligned_cols=117 Identities=25% Similarity=0.440 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|...||.+..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~---------------------~~~~~dlvl~D~~l~~~~g 60 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF---------------------EAEQPDIIILDLMLPEIDG 60 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHHCCSEEEECSSCSSSCH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHH---------------------HhCCCCEEEEeccCCCCCH
Confidence 4899999999999999999999999999999999999988 4457999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++++++++.. +.+|||++|++........+++.|+++||.||++.++|...+.+++++
T Consensus 61 ~~~~~~l~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 61 LEVAKTIRKT--SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp HHHHHHHHHH--CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC--CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 9999999853 679999999999999999999999999999999999999999988753
No 37
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.88 E-value=1.7e-21 Score=151.44 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
...++||||||++..+..+..+|...|+ .|..+.++.+|++.+... ......||+||+|+.|
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~----------------~~~~~~~dlvi~D~~l 70 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNEL----------------YAAGRWPSIICIDINM 70 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHH----------------HTSSCCCSEEEEESSC
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHh----------------hccCCCCCEEEEcCCC
Confidence 3467999999999999999999999998 899999999999998310 0011789999999999
Q ss_pred CCCCHHHHHHHHhhc---CCCCCcEEEEecCCChHHHHHHHHcC-CcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 124 PGMTGYDLLKRLKVS---SWKDVPVVVMSSENVPSRVTMCLEEG-AEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 124 p~~~G~el~~~lr~~---~~~~~pII~lsa~~~~~~~~~a~~~G-a~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
|+++|+++++.||.. ..+.+|||++|+..+.....+++..| +++||.||++.++|...+.++......
T Consensus 71 ~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 71 PGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp SSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC---
T ss_pred CCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccC
Confidence 999999999999963 35789999999999999999999999 999999999999999999999875543
No 38
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.88 E-value=7.7e-23 Score=158.37 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=110.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcC-cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSS-YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g-~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
....+||||||++..+..+..+|+..| |.|..+.++.+|++.+ ....||+||+|+.||
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~D~~l~ 70 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPP---------------------ADTRPGIVILDLGGG 70 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCC---------------------TTCCCSEEEEEEETT
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHH---------------------hccCCCEEEEeCCCC
Confidence 345799999999999999999999999 9999999999999887 567899999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++|+++++++|.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+
T Consensus 71 ~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 71 DLLGKPGIVEARAL-WATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp GGGGSTTHHHHHGG-GTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CchHHHHHHHHHhh-CCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999954 3689999999999999999999999999999999999999999988753
No 39
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.88 E-value=2.1e-21 Score=151.12 Aligned_cols=122 Identities=22% Similarity=0.371 Sum_probs=111.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+++||||||++..+..+..+|...||.|..+.++.+|++.+.. ....||+||+|+.||+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~-------------------~~~~~dlvi~d~~l~~~~ 63 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE-------------------NCNSIDVVITDMKMPKLS 63 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH-------------------TTTTCCEEEEESCCSSSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh-------------------CCCCCCEEEEeCCCCCCc
Confidence 5699999999999999999999999999999999999999820 156899999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|++++++++.. .+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++.+.
T Consensus 64 g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 64 GMDILREIKKI-TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp HHHHHHHHHHH-CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999964 57899999999999999999999999999999999999999999988643
No 40
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.88 E-value=3.9e-22 Score=156.10 Aligned_cols=125 Identities=12% Similarity=0.163 Sum_probs=113.0
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHhhcC-cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccC-CCccEEEEeC
Q 026247 44 QQQETFHVLAVDDSLIDRKILENLLRVSS-YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE-SRVNLIMTDY 121 (241)
Q Consensus 44 ~~~~~~~VLIVDDd~~~~~~l~~~L~~~g-~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVllD~ 121 (241)
......+||||||++..+..+..+|...| |.|..+.++.+++..+. .. ..||+||+|+
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~--------------------~~~~~~dlvi~D~ 75 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRT--------------------DGLDAFDILMIDG 75 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCH--------------------HHHTTCSEEEEEC
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH--------------------hcCCCCCEEEEeC
Confidence 34456799999999999999999999999 99999999998887661 23 7899999999
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.||+++|++++++|+.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+.
T Consensus 76 ~l~~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 76 AALDTAELAAIEKLSRL-HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TTCCHHHHHHHHHHHHH-CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHHh-CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999964 47899999999999999999999999999999999999999999998754
No 41
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.87 E-value=2.9e-22 Score=155.54 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=111.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
...+||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~d~~l~~~ 63 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQV---------------------ARRPYAAMTVDLNLPDQ 63 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH---------------------HHSCCSEEEECSCCSSS
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCCC
Confidence 357999999999999999999999999999999999999998 55679999999999999
Q ss_pred CHHHHHHHHhhc-CCCCCcEEEEecCCChHHHH-HHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 127 TGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVT-MCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 127 ~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~-~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
+|++++++||.. ..+.+|||++|++.+..... .+++.|+++||.||++.++|...+.+++.+...
T Consensus 64 ~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 64 DGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp CHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999963 45789999999988777776 889999999999999999999999999875443
No 42
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.87 E-value=2.7e-21 Score=150.98 Aligned_cols=122 Identities=20% Similarity=0.381 Sum_probs=112.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE--EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ--VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
.+++||||||++..+..+..+|+..|+. |..+.++.+|++.+ ....||+||+|+.||
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l---------------------~~~~~dlii~D~~l~ 62 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV---------------------QQAKYDLIILDIGLP 62 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHH---------------------TTCCCSEEEECTTCG
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHh---------------------hcCCCCEEEEeCCCC
Confidence 3579999999999999999999999987 88999999999999 567899999999999
Q ss_pred CCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC-ChHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV-RLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~~l~~~ 189 (241)
+++|++++++||.. ..+.+|||++|+..+.....++++.|+++||.||+ +.++|...+.++++..
T Consensus 63 ~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~ 129 (144)
T 3kht_A 63 IANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW 129 (144)
T ss_dssp GGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHH
Confidence 99999999999953 45789999999999999999999999999999999 9999999999988653
No 43
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.87 E-value=1e-21 Score=151.94 Aligned_cols=121 Identities=21% Similarity=0.288 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+..+|...|+.|..+.++.+|++.+ ....||+||+|+.||++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~d~~l~~~ 64 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLF---------------------GLHAPDVIITDIRMPKL 64 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHH---------------------HHHCCSEEEECSSCSSS
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHH---------------------hccCCCEEEEeCCCCCC
Confidence 357999999999999999999999899999999999999998 45679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|+++++.||.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++++.
T Consensus 65 ~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 65 GGLEMLDRIKAG-GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CHHHHHHHHHHT-TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc-CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 999999999954 57899999999999999999999999999999999999999999998654
No 44
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.87 E-value=1.3e-21 Score=170.06 Aligned_cols=123 Identities=26% Similarity=0.384 Sum_probs=111.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+...|+..||.|..+.++.+|++.+. ....||+||+|+.||++
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~--------------------~~~~~dlvllD~~mP~~ 182 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLE--------------------QHPAIRLVLVDYYMPEI 182 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH--------------------HCTTEEEEEECSCCSSS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh--------------------cCCCCCEEEEcCCCCCC
Confidence 4579999999999999999999999999999999999999982 23358999999999999
Q ss_pred CHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
||++++++||.. ....+|||++|++.+.....+++++||+|||.||++.++|...+.+++...
T Consensus 183 dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 246 (259)
T 3luf_A 183 DGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEAL 246 (259)
T ss_dssp CHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhH
Confidence 999999999965 335789999999999999999999999999999999999999999887543
No 45
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.87 E-value=8.9e-22 Score=153.20 Aligned_cols=118 Identities=19% Similarity=0.337 Sum_probs=109.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.++||||||++..+..+..+|...||.|..+.++.++++.+ ....||+||+|+.||+++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvllD~~l~~~~ 62 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKI---------------------FSNKYDLIFLEIILSDGD 62 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH---------------------HHCCCSEEEEESEETTEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------HhcCCCEEEEeCCCCCCC
Confidence 46899999999999999999998899999999999999998 456799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|++++++|+.. ..+|||++|+..+.....++++.|+++||.||++.++|...+.+++.+
T Consensus 63 g~~l~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 63 GWTLCKKIRNV--TTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp HHHHHHHHHTT--CCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC--CCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999953 278999999999999999999999999999999999999999988754
No 46
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.87 E-value=2.5e-21 Score=150.57 Aligned_cols=121 Identities=24% Similarity=0.425 Sum_probs=108.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~dlvi~D~~l~~~~ 61 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEAL---------------------NATPPDLVLLDIMMEPMD 61 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEEESCCSSSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHH---------------------hccCCCEEEEeCCCCCCC
Confidence 46899999999999999999999999999999999999998 456799999999999999
Q ss_pred HHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.|+.. ..+.+|||++|+.........++.+|+++||.||++.++|...+.+++.+.
T Consensus 62 g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 62 GWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp HHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999864 246899999999887666666777889999999999999999999998654
No 47
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.87 E-value=1.6e-21 Score=155.28 Aligned_cols=121 Identities=22% Similarity=0.380 Sum_probs=111.0
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCC--CccEEEEeC
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEES--RVNLIMTDY 121 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DlVllD~ 121 (241)
....++||||||++..+..+..+|+..||.+. .+.++.+|++.+ ... .||+||+|+
T Consensus 33 ~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l---------------------~~~~~~~dliilD~ 91 (157)
T 3hzh_A 33 TGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKY---------------------KNHYPNIDIVTLXI 91 (157)
T ss_dssp TTEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---------------------HHHGGGCCEEEECS
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH---------------------HhcCCCCCEEEEec
Confidence 34457999999999999999999999999998 999999999998 334 799999999
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.||+++|++++++||.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.
T Consensus 92 ~l~~~~g~~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 92 TMPKMDGITCLSNIMEF-DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp SCSSSCHHHHHHHHHHH-CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred cCCCccHHHHHHHHHhh-CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999954 478999999999999999999999999999999999999999998774
No 48
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.87 E-value=5.8e-21 Score=146.85 Aligned_cols=127 Identities=23% Similarity=0.342 Sum_probs=110.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
+++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ........||+||+|+.||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--------------~~~~~~~~~dlvi~d~~~~~ 67 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQE--------------GEYANASRPDLILLXLNLPK 67 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTC--------------GGGGSCCCCSEEEECSSCSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcc--------------cccccCCCCcEEEEecCCCc
Confidence 46899999999999999999999998 899999999999998200 00000167999999999999
Q ss_pred CCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|++++++++... .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++..
T Consensus 68 ~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 68 KDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp SCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHH
Confidence 99999999999642 2689999999999999999999999999999999999999999988754
No 49
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.87 E-value=1.1e-21 Score=150.62 Aligned_cols=121 Identities=24% Similarity=0.352 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+..+|+ .||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~d~~l~~~~ 61 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQA---------------------LAHPPDVLISDVNMDGMD 61 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHH---------------------HHSCCSEEEECSSCSSSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCC
Confidence 5699999999999999999999 899999999999999998 556799999999999999
Q ss_pred HHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 128 GYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 128 G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
|+++++++|.. ..+.+|||++|++.+... ..+++.|+++||.||++.++|...+.+++.+...
T Consensus 62 g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 62 GYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp HHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 99999999965 356899999999987777 8899999999999999999999999999875443
No 50
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.87 E-value=2.6e-21 Score=149.15 Aligned_cols=120 Identities=23% Similarity=0.402 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+.+||||||++..+..+...|...||.|..+.++.++++.+ ....||+||+|+.||+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~---------------------~~~~~dlvl~D~~l~~~~ 61 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKA---------------------ETEKPDLIVLDVMLPKLD 61 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHHCCSEEEEESSCSSSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHH---------------------hhcCCCEEEEecCCCCCC
Confidence 35899999999999999999999999999999999999988 455799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|++++++++.. .+.+|||++|++.+......+++.|+++||.||++.++|...+.+++.+.
T Consensus 62 g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 62 GIEVCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp HHHHHHHHHHT-TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcC-CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999954 46899999999998888899999999999999999999999999998654
No 51
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.87 E-value=5.9e-21 Score=147.83 Aligned_cols=126 Identities=22% Similarity=0.359 Sum_probs=112.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhh-cCcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRV-SSYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~-~g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
...++||||||++..+..+..+|.. .||. |..+.++.+|++.+ ....||+||+|+.|
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l---------------------~~~~~dlii~d~~l 64 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLL---------------------HTVKPDVVMLDLMM 64 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHH---------------------HHTCCSEEEEETTC
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHH---------------------HhcCCCEEEEeccc
Confidence 3467999999999999999999998 8999 89999999999998 45679999999999
Q ss_pred CCCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 124 PGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 124 p~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
|+++|++++++|+.. ..+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++++....
T Consensus 65 ~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 134 (143)
T 3cnb_A 65 VGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKAT 134 (143)
T ss_dssp TTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccc
Confidence 999999999999963 457899999999999999999999999999999999999999999999765443
No 52
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.87 E-value=6.7e-21 Score=147.30 Aligned_cols=121 Identities=26% Similarity=0.468 Sum_probs=106.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+ .... |+||+|+.||++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~---------------------~~~~-dlvllD~~lp~~ 63 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV---------------------SHEH-KVVFMDVCMPGV 63 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC---------------------CTTC-SEEEEECCSSTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH---------------------hccC-CEEEEeCCCCCC
Confidence 457999999999999999999999999999999999999987 3334 999999999999
Q ss_pred CHHHHHHHHhhc-CC---CCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVS-SW---KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~-~~---~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|++++++++.. .. ...+||++|++.+.....++++.|+++||.||++.++|...+.+++.+.
T Consensus 64 ~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 64 ENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp TTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 999999999842 21 2235888999999999999999999999999999999999999998643
No 53
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.87 E-value=3.8e-21 Score=151.63 Aligned_cols=128 Identities=27% Similarity=0.341 Sum_probs=111.4
Q ss_pred ccccCCccEEEEEeCCHHHHHHHHHHHhhcCcE--EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 42 QQQQQETFHVLAVDDSLIDRKILENLLRVSSYQ--VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 42 ~~~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
......+.+||||||++..+..+..+|...|+. +..+.++.+|++.+ ....||+||+
T Consensus 9 ~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l---------------------~~~~~dlii~ 67 (152)
T 3eul_A 9 SNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELI---------------------KAHLPDVALL 67 (152)
T ss_dssp -----CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHH---------------------HHHCCSEEEE
T ss_pred CCCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHH---------------------HhcCCCEEEE
Confidence 344556789999999999999999999988854 55899999999998 4567999999
Q ss_pred eCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 120 DYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 120 D~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
|+.||+++|+++++.|+.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+...
T Consensus 68 d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 68 DYRMPGMDGAQVAAAVRSY-ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp ETTCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred eCCCCCCCHHHHHHHHHhc-CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 9999999999999999954 5789999999999999999999999999999999999999999999976543
No 54
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.87 E-value=8.1e-22 Score=150.06 Aligned_cols=119 Identities=24% Similarity=0.396 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|...||.+..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~---------------------~~~~~dlvi~D~~l~~~~g 61 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL---------------------NEPWPDLILLAWMLPGGSG 61 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTC---------------------SSSCCSEEEEESEETTEEH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH---------------------hccCCCEEEEecCCCCCCH
Confidence 5899999999999999999999999999999999999887 5567999999999999999
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++++++|.. ..+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++++
T Consensus 62 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp HHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999954 23789999999999888899999999999999999999999999998864
No 55
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.87 E-value=2.2e-21 Score=151.14 Aligned_cols=118 Identities=25% Similarity=0.414 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+++|
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvllD~~l~~~~g 63 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI---------------------ERSKPQLIILDLKLPDMSG 63 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHH---------------------HHHCCSEEEECSBCSSSBH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHH---------------------HhcCCCEEEEecCCCCCCH
Confidence 3899999999999999999998999999999999999998 4557999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++++++|+.. .+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++.+
T Consensus 64 ~~l~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 64 EDVLDWINQN-DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp HHHHHHHHHT-TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999954 4789999999999999999999999999999999999999999988754
No 56
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.87 E-value=4.4e-21 Score=149.18 Aligned_cols=123 Identities=24% Similarity=0.421 Sum_probs=111.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+ ||++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~d~-~~~~ 60 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFL---------------------RREKIDLVFVDV-FEGE 60 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHH---------------------TTSCCSEEEEEC-TTTH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH---------------------hccCCCEEEEeC-CCCC
Confidence 356899999999999999999999999999999999999999 566899999999 9999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
+|+++++.++.. .+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++.+....
T Consensus 61 ~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 125 (142)
T 2qxy_A 61 ESLNLIRRIREE-FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRV 125 (142)
T ss_dssp HHHHHHHHHHHH-CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcccc
Confidence 999999999954 46899999999999999999999999999999999999999999999765444
No 57
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.87 E-value=2.5e-21 Score=167.37 Aligned_cols=121 Identities=27% Similarity=0.520 Sum_probs=111.9
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
....++||||||++.++..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l---------------------~~~~~dlvl~D~~mp 184 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL---------------------SKNHIDIVLSDVNMP 184 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHH---------------------HHSCCSEEEEEESSC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEcCCCC
Confidence 34568999999999999999999999999999999999999998 456799999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+|+|++++++||.. .+.+|||++|++.......++++.|+++||.||++.++|...+.+++.
T Consensus 185 ~~~G~~l~~~ir~~-~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 185 NMDGYRLTQRIRQL-GLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp SSCCHHHHHHHHHH-HCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc-CCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 99999999999964 368999999999999999999999999999999999999999998875
No 58
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.87 E-value=1.7e-21 Score=151.89 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-C
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-M 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~ 126 (241)
..+||||||++..+..+..+|...||.|..+.++.+|++.+. ....||+||+|+.||+ +
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~--------------------~~~~~dlvi~D~~l~~~~ 64 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVS--------------------GGWYPDLILMDIELGEGM 64 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH--------------------TTCCCSEEEEESSCSSSC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHh--------------------cCCCCCEEEEeccCCCCC
Confidence 569999999999999999999999999999999999999982 2368999999999995 9
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|++++++++.. +.+|||++|++.+.....++++.|+++||.||++.++|...+.++++..
T Consensus 65 ~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 125 (140)
T 3h5i_A 65 DGVQTALAIQQI--SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLY 125 (140)
T ss_dssp CHHHHHHHHHHH--CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999964 7899999999998888889999999999999999999999999988643
No 59
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.87 E-value=6.5e-21 Score=146.18 Aligned_cols=122 Identities=22% Similarity=0.349 Sum_probs=104.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
...+||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlii~d~~l~~~ 63 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL---------------------STFEPAIMTLDLSMPKL 63 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHTCCSEEEEESCBTTB
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH---------------------HhcCCCEEEEecCCCCC
Confidence 357999999999999999999999999999999999999998 56679999999999999
Q ss_pred CHHHHHHHHhhcCC-CCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 127 TGYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 127 ~G~el~~~lr~~~~-~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+|++++++||.... +..+||++++.... ...++++.|+++||.||++.++|...+.+......
T Consensus 64 ~g~~~~~~l~~~~~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 64 DGLDVIRSLRQNKVANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp CHHHHHHHHHTTTCSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHhcCccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 99999999996432 45566666665544 78899999999999999999999999999986543
No 60
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.86 E-value=2.4e-21 Score=145.93 Aligned_cols=116 Identities=26% Similarity=0.447 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+..+|...||.+..+.++.+++..+ ....||+||+|+.||+++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvi~D~~l~~~~g 60 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA---------------------ATRKPDLIILDLGLPDGDG 60 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH---------------------HHHCCSEEEEESEETTEEH
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCcH
Confidence 5899999999999999999998999999999999999887 4457999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++++++++. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.
T Consensus 61 ~~~~~~l~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 61 IEFIRDLRQ--WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp HHHHHHHHT--TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 999999983 468999999999999999999999999999999999999999988875
No 61
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.86 E-value=2e-21 Score=151.91 Aligned_cols=124 Identities=23% Similarity=0.323 Sum_probs=112.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
...++||||||++..+..+...|...||.|..+.++.++++.+ ....||+||+|+.||+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlii~d~~l~~ 64 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVA---------------------VKTHPHLIITEANMPK 64 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHH---------------------HHHCCSEEEEESCCSS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH---------------------HcCCCCEEEEcCCCCC
Confidence 3467999999999999999999999999999999999999998 4457999999999999
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
++|+++++.|+.. ..+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++....
T Consensus 65 ~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 65 ISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp SCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999953 4578999999999999999999999999999999999999999999886543
No 62
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.86 E-value=8.1e-21 Score=147.78 Aligned_cols=129 Identities=25% Similarity=0.463 Sum_probs=110.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccC--CCccEEEEeCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE--SRVNLIMTDYC 122 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DlVllD~~ 122 (241)
.+++||||||++..+..+..+|+..|+ .|..+.++.+|++.+..... . .... ..||+||+|+.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~------~-------~~~~~~~~~dlvi~D~~ 71 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGS------Y-------CNPDIAPRPAVILLDLN 71 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCS------S-------SCGGGCCCCSEEEECSC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhccc------c-------cCcccCCCCcEEEEECC
Confidence 467899999999999999999999998 89999999999999831000 0 0001 67999999999
Q ss_pred CCCCCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 123 MPGMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
||+++|++++++|+... .+.+|||++|++.+......+++.|+++||.||++.++|...+.++++.
T Consensus 72 l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 72 LPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp CSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999542 2789999999999999999999999999999999999999999988754
No 63
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.86 E-value=3e-21 Score=160.03 Aligned_cols=119 Identities=28% Similarity=0.389 Sum_probs=110.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvl~D~~lp~~~ 62 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR---------------------RPEQHGCLVLDMRMPGMS 62 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHC---------------------CTTSCEEEEEESCCSSSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhh---------------------hccCCCEEEEeCCCCCCC
Confidence 45899999999999999999999999999999999999988 567899999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|++++++++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+
T Consensus 63 g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 63 GIELQEQLTAI-SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp HHHHHHHHHHT-TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999954 5789999999999988999999999999999999999999999888754
No 64
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.86 E-value=5.8e-21 Score=159.30 Aligned_cols=122 Identities=28% Similarity=0.398 Sum_probs=111.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcC-cEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSS-YQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g-~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
.+++||||||++..+..+..+|+..| |.+ ..+.++.+|++.+ ....||+||+|+.||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~---------------------~~~~~dlvllD~~lp 62 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELA---------------------ESLDPDLILLDLNMP 62 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHH---------------------HHHCCSEEEEETTST
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeCCCC
Confidence 35799999999999999999998764 887 6899999999998 455799999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+++|++++++++.. .+.+|||++|++.+.+...++++.|+++||.||++.++|...+.+++.+..
T Consensus 63 ~~~g~~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 63 GMNGLETLDKLREK-SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp TSCHHHHHHHHHHS-CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHh-CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 99999999999954 578999999999999999999999999999999999999999999997654
No 65
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.86 E-value=6.9e-21 Score=147.22 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=111.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC---
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP--- 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp--- 124 (241)
+++||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~d~~~~~~~ 61 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVL---------------------REENPEVVLLDMNFTSGI 61 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHH---------------------HHSCEEEEEEETTTTC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH---------------------HcCCCCEEEEeCCcCCCC
Confidence 57999999999999999999999999999999999999998 456799999999999
Q ss_pred --CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 125 --GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 125 --~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
+++|+++++.++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+...
T Consensus 62 ~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 62 NNGNEGLFWLHEIKRQ-YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp ---CCHHHHHHHHHHH-CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred CCCccHHHHHHHHHhh-CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 99999999999964 5789999999999999999999999999999999999999999999875443
No 66
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.86 E-value=3.5e-21 Score=144.55 Aligned_cols=114 Identities=22% Similarity=0.420 Sum_probs=103.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|+..||.|..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~---------------------~~~~~dlvl~D~~l~~~~g 60 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKF---------------------FSGNYDLVILDIEMPGISG 60 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEECSCCSSSCH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hcCCCCEEEEECCCCCCCH
Confidence 4899999999999999999999999999999999999998 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
++++++++.. .+.+|||++|++.+.. ..+++.|+++||.||++.++|...+.+++
T Consensus 61 ~~~~~~l~~~-~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 61 LEVAGEIRKK-KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp HHHHHHHHHH-CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHHHHHHHcc-CCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9999999854 3789999999986655 67889999999999999999999988775
No 67
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.86 E-value=5.6e-21 Score=164.59 Aligned_cols=121 Identities=23% Similarity=0.363 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||++
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~DlvllD~~lp~~ 94 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKA---------------------REDHPDLILLDLGLPDF 94 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEEECCSCHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH---------------------hcCCCCEEEEcCCCCCC
Confidence 356899999999999999999999999999999999999998 45679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+|++++++|+. .+.+|||++|++.+.....+++++||++||.||++.++|...+..++++..
T Consensus 95 ~G~~l~~~lr~--~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 95 DGGDVVQRLRK--NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp HHHHHHHHHHT--TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHc--CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 99999999995 478999999999999999999999999999999999999999999997654
No 68
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.86 E-value=1.1e-20 Score=146.14 Aligned_cols=121 Identities=19% Similarity=0.298 Sum_probs=110.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
...++||||||++..+..+..+|+..||.+. .+.++.++++.+ ....||+||+|+.||
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~---------------------~~~~~dlii~d~~~~ 65 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCA---------------------PDLRPDIALVDIMLC 65 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH---------------------HHHCCSEEEEESSCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHH---------------------HhCCCCEEEEecCCC
Confidence 3467999999999999999999999999999 599999999998 445699999999998
Q ss_pred -CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 125 -GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 -~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++|+++++.++.. +.+|||++|+..+.....++++.|+++||.||++.++|...+.+++++.
T Consensus 66 ~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 66 GALDGVETAARLAAG--CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp SSSCHHHHHHHHHHH--SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC--CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 79999999999965 7899999999999999999999999999999999999999999988643
No 69
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.85 E-value=2e-20 Score=147.84 Aligned_cols=121 Identities=27% Similarity=0.352 Sum_probs=111.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlvi~d~~l~~ 63 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL---------------------KGTSVQLVISDMRMPE 63 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHH---------------------TTSCCSEEEEESSCSS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH---------------------hcCCCCEEEEecCCCC
Confidence 3467999999999999999999999999999999999999998 5567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC-CcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG-AEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G-a~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|+++++.|+.. .+.+|||++|+..+.....+++..| +++||.||++.++|...+.+++..
T Consensus 64 ~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 64 MGGEVFLEQVAKS-YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp SCHHHHHHHHHHH-CTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 9999999999954 4789999999999888999999998 999999999999999999988754
No 70
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.85 E-value=1.8e-20 Score=147.91 Aligned_cols=122 Identities=17% Similarity=0.285 Sum_probs=112.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhh-cCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRV-SSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~-~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
.+++||||||++..+..+..+|.. .||.+. .+.++.++++.+ ....||+||+|+.||
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l---------------------~~~~~dlii~D~~l~ 62 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLY---------------------RETTPDIVVMDLTLP 62 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHH---------------------HTTCCSEEEECSCCS
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH---------------------hcCCCCEEEEecCCC
Confidence 357999999999999999999997 799988 899999999998 566799999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+++|++++++++.. .+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++.+..
T Consensus 63 ~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 63 GPGGIEATRHIRQW-DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp SSCHHHHHHHHHHH-CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHh-CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 99999999999964 478999999999999999999999999999999999999999999986543
No 71
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.85 E-value=1.9e-21 Score=177.83 Aligned_cols=117 Identities=22% Similarity=0.286 Sum_probs=110.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
+||||||++.++..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+|||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l---------------------~~~~~DlvllDi~mP~~dG~ 60 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKI---------------------KELFFPVIVLDVWMPDGDGV 60 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHBCCSEEEEESEETTEETT
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCCCCHH
Confidence 799999999999999999999999999999999999998 45679999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+++++||.. .+.+|||++|++.+.+...++++.||++||.||++.++|...+.+++..
T Consensus 61 ell~~lr~~-~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 118 (368)
T 3dzd_A 61 NFIDFIKEN-SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEE 118 (368)
T ss_dssp THHHHHHHH-CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999954 4789999999999999999999999999999999999999999998864
No 72
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.85 E-value=1.9e-20 Score=147.63 Aligned_cols=120 Identities=24% Similarity=0.384 Sum_probs=108.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+++||||||++..+..+..+|+. ||.|..+.++.+|++.+. ...+||+||+|+.||++
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~--------------------~~~~~dlvi~D~~l~~~ 61 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIK--------------------KSDPFSVIMVDMRMPGM 61 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHH--------------------HSCCCSEEEEESCCSSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHH--------------------cCCCCCEEEEeCCCCCC
Confidence 357999999999999999999985 999999999999999983 23347999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC-CcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG-AEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G-a~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|+++++++|.. .+.+|||++|+..+.....+++..| +++||.||++.++|...+.+++..
T Consensus 62 ~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 62 EGTEVIQKARLI-SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp CHHHHHHHHHHH-CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhc-CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 999999999954 4789999999999999999999999 999999999999999999988754
No 73
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.85 E-value=1.8e-20 Score=148.23 Aligned_cols=120 Identities=23% Similarity=0.390 Sum_probs=110.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+..+|...||.|..+.++.++++.+ ....||+||+|+.||++
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dliild~~l~~~ 60 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL---------------------SADFAGIVISDIRMPGM 60 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC---------------------CTTCCSEEEEESCCSSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCCC
Confidence 357899999999999999999999999999999999999988 56679999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|+++++.++.. .+.+|||++|+..+......+++.|+++||.||++.++|...+.+++..
T Consensus 61 ~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 61 DGLALFRKILAL-DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp CHHHHHHHHHHH-CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhh-CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999954 4789999999999989999999999999999999999999999988754
No 74
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.85 E-value=5.5e-21 Score=148.35 Aligned_cols=122 Identities=21% Similarity=0.401 Sum_probs=112.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+++||||||++..+..+..+|...||+|..+.++.+|++.+ ....||+||+|+.||++
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~dlii~d~~l~~~ 64 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLL---------------------KKGFSGVVLLDIMMPGM 64 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HTCCCEEEEEESCCSSS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHH---------------------HhcCCCEEEEeCCCCCC
Confidence 467999999999999999999999999999999999999998 56679999999999999
Q ss_pred CHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|++++++++.. ..+.+|||++|+..+.....++++.|+++||.||++.++|...+.++++..
T Consensus 65 ~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 128 (142)
T 3cg4_A 65 DGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFV 128 (142)
T ss_dssp CHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999963 457899999999988888889999999999999999999999999988643
No 75
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.85 E-value=6.3e-21 Score=149.25 Aligned_cols=118 Identities=22% Similarity=0.333 Sum_probs=101.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHh--hcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLR--VSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~--~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
++||||||++..+..+..+|. ..||.+. .+.++.++++.+ ....||+||+|+.||+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~---------------------~~~~~dlvllD~~lp~ 61 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIA---------------------LKHPPNVLLTDVRMPR 61 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHH---------------------TTSCCSEEEEESCCSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHH---------------------hcCCCCEEEEeCCCCC
Confidence 589999999999999999997 3688777 899999999998 5567999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++|++++++|+.. .+.+|||++|+..+.....++++.|+++||.||++.++|...+.+++..
T Consensus 62 ~~g~~l~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 62 MDGIELVDNILKL-YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp SCHHHHHHHHHHH-CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh-CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999854 4789999999999888889999999999999999999999999888753
No 76
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.85 E-value=5.5e-21 Score=146.62 Aligned_cols=122 Identities=16% Similarity=0.225 Sum_probs=108.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+++||||||++..+..+..+|+..++.|..+.++.++++.+ ... ||+||+|+.||+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~---------------------~~~-~dlvi~D~~l~~~~ 60 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLS---------------------LNK-QDIIILDLMMPDMD 60 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSC---------------------CCT-TEEEEEECCTTTTH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhh---------------------ccC-CCEEEEeCCCCCCC
Confidence 56899999999999999999998888999999999998876 445 99999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCCh-----HHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVP-----SRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~-----~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
|+++++++|. ..+.+|||++|++.+. ....++++.|+++||.||++.++|...+.++..+....
T Consensus 61 g~~~~~~l~~-~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~~ 129 (135)
T 3eqz_A 61 GIEVIRHLAE-HKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAEG 129 (135)
T ss_dssp HHHHHHHHHH-TTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHh-CCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcccc
Confidence 9999999995 4578999999998875 67778999999999999999999999999998765443
No 77
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.85 E-value=1.2e-20 Score=158.08 Aligned_cols=121 Identities=20% Similarity=0.352 Sum_probs=112.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~---------------------~~~~~dlvllD~~l~~~~ 60 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMA---------------------LNEPFDVVILDIMLPVHD 60 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEEESCCSSSC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCC
Confidence 46899999999999999999999999999999999999988 456799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
|+++++.++.. .+.+|||++|++.+......+++.|+++||.||++.++|...+..++.+..
T Consensus 61 g~~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 61 GWEILKSMRES-GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp HHHHHHHHHHT-TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999954 478999999999999999999999999999999999999999999987543
No 78
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.85 E-value=4.7e-21 Score=148.92 Aligned_cols=120 Identities=26% Similarity=0.370 Sum_probs=100.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+.+||||||++..+..+..+|+.. |.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~---------------------~~~~~dlvi~D~~l~~~~ 60 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQI---------------------DHHHPDLVILDMDIIGEN 60 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHH---------------------HHHCCSEEEEETTC----
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCc
Confidence 468999999999999999999977 9999999999999998 456799999999999999
Q ss_pred HHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++++|... .+.+|||++|+..+.+...++++.|+++||.||++.++|...+.+++++.
T Consensus 61 g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 61 SPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp --CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 999999999542 37899999999998888899999999999999999999999999988643
No 79
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.84 E-value=9e-21 Score=173.16 Aligned_cols=118 Identities=29% Similarity=0.500 Sum_probs=105.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+ ....||+||+|+.||+|+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~---------------------~~~~~dlvllD~~mp~~~ 63 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF---------------------ESEQPDLVICDLRMPQID 63 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHH---------------------HHSCCSEEEECCCSSSSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH---------------------hhCCCCEEEEcCCCCCCC
Confidence 56899999999999999999999999999999999999998 556799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC-ChHHHHHHHHHHhc
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV-RLSDLEKLQPRLLK 187 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~~l~ 187 (241)
|++++++||.. .+.+|||++|++.+.+...++++.|+++||.||+ ..+.|...+.+++.
T Consensus 64 G~~~~~~lr~~-~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~ 123 (394)
T 3eq2_A 64 GLELIRRIRQT-ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALD 123 (394)
T ss_dssp THHHHHHHHHT-TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHh
Confidence 99999999954 5789999999999999999999999999999999 67888887777664
No 80
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.84 E-value=3.2e-20 Score=140.38 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-CCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-GMT 127 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~~~ 127 (241)
++||||||++..+..+...|+..||+|..+.++.++++.+ ....||+||+|+.|| +++
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~---------------------~~~~~dlvi~d~~~~~~~~ 64 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQI---------------------RRDRPDLVVLAVDLSAGQN 64 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHH---------------------HHHCCSEEEEESBCGGGCB
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHH---------------------HhcCCCEEEEeCCCCCCCC
Confidence 5899999999999999999999999999999999999998 445799999999999 999
Q ss_pred HHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|++++++++.. ..+.+|||++ +........++++.|+++||.||++.++|...+.++++.
T Consensus 65 g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 65 GYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp HHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 99999999964 2578999999 888888889999999999999999999999999998854
No 81
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.84 E-value=1.8e-20 Score=155.49 Aligned_cols=118 Identities=25% Similarity=0.376 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..+||||||++..+..+..+|...||.|. .+.++.+|++.+ ....||+||+|+.||++
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~---------------------~~~~~dlvi~D~~~p~~ 71 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELA---------------------ELHKPDLVIMDVKMPRR 71 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---------------------HHHCCSEEEEESSCSSS
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---------------------hhcCCCEEEEeCCCCCC
Confidence 36899999999999999999999999998 899999999998 45579999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
+|++++++++... + .|||++|++.+.....++++.|+++||.||++.++|...+.+++.+
T Consensus 72 ~g~~~~~~l~~~~-~-~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 72 DGIDAASEIASKR-I-APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp CHHHHHHHHHHTT-C-SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhcC-C-CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999643 3 5999999999999999999999999999999999999999888754
No 82
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.84 E-value=5.9e-20 Score=142.64 Aligned_cols=128 Identities=23% Similarity=0.335 Sum_probs=109.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++||||||++..+..+..+|...|+ .|..+.++.+|++.+... .......||+||+|+.||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~---------------~~~~~~~~dlii~D~~l~ 70 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGR---------------NKENKIHPKLILLDINIP 70 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTC---------------TTCCCCCCSEEEEETTCT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhc---------------ccccCCCCCEEEEecCCC
Confidence 356899999999999999999999998 999999999999998210 000026799999999999
Q ss_pred CCCHHHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++|+++++.++... .+.+|||++|+..+.....++++.|+++||.||++.++|...+.......
T Consensus 71 ~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 71 KMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp TSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999998542 27899999999999999999999999999999999999999877766544
No 83
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.84 E-value=3.3e-20 Score=146.29 Aligned_cols=123 Identities=29% Similarity=0.286 Sum_probs=101.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-Cc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccC-CCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS-SY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE-SRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~-g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVllD~~mp 124 (241)
+++||||||++..+..+..+|... |+ .|..+.++.++++.+ .. ..||+||+|+.||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l---------------------~~~~~~dlvi~d~~l~ 61 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFL---------------------EADNTVDLILLDVNLP 61 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHH---------------------HTTCCCSEEEECC---
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHH---------------------hccCCCCEEEEeCCCC
Confidence 579999999999999999999987 88 688999999999998 45 7899999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 192 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~~ 192 (241)
+++|+++++.++.. .+.+|||++|+..+......+++.|+++||.||++.++|...+.+++.+....
T Consensus 62 ~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 62 DAEAIDGLVRLKRF-DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp ---CHHHHHHHHHH-CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred CCchHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 99999999999964 57899999999998899999999999999999999999999999999765443
No 84
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.84 E-value=4.5e-20 Score=143.34 Aligned_cols=116 Identities=23% Similarity=0.393 Sum_probs=104.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|... |.|..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~---------------------~~~~~dlvl~D~~lp~~~g 59 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAIL---------------------EEEWVQVIICDQRMPGRTG 59 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHH---------------------HHSCEEEEEEESCCSSSCH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCcH
Confidence 37999999999999999999864 9999999999999998 4557999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc-CCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE-GAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~-Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+++++.|+.. .+.+|+|++|++.+.....+++.. |+++||.||++.++|...+.+++.
T Consensus 60 ~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 60 VDFLTEVRER-WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp HHHHHHHHHH-CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 9999999954 468899999999888888888876 599999999999999999988875
No 85
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.83 E-value=2e-20 Score=157.46 Aligned_cols=120 Identities=33% Similarity=0.436 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~---------------------~~~~~dlvllD~~l~~~~ 65 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSA---------------------TENRPDAIVLDINMPVLD 65 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHSCCSEEEEESSCSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCCCC
Confidence 46999999999999999999999999999999999999998 456799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++++.
T Consensus 66 g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 66 GVSVVTALRAM-DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp HHHHHHHHHHT-TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999954 47899999999999888889999999999999999999999999998653
No 86
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.83 E-value=4e-20 Score=171.52 Aligned_cols=118 Identities=29% Similarity=0.436 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+|+|
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~---------------------~~~~~dlvllD~~mp~~~G 60 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMA---------------------ARDLPDIILLDVMMPGMDG 60 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HHHCCSEEEEESCCSSSCH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------hcCCCCEEEEcCCCCCCCH
Confidence 4799999999999999999999999999999999999998 4557999999999999999
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++++++||.. ..+.+|||++|++.+.....++++.||++||.||++.++|...+.+++.
T Consensus 61 ~~~~~~l~~~~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp HHHHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999964 3468999999999999999999999999999999999999998888764
No 87
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.83 E-value=1.3e-19 Score=140.14 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=108.0
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 44 QQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 44 ~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
....+.+||||||++..+..+..+|...||.|..+.++.++++.+ ....||+|| |
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~dlvi----~ 68 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLM---------------------DIRNYDLVM----V 68 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH---------------------HHSCCSEEE----E
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHH---------------------HcCCCCEEE----E
Confidence 445567999999999999999999999999999999999999998 456799999 9
Q ss_pred CCCCHHHHHHHHhhcCCC-CCcEEEEecCCChHHHHHHHHcCCcceEeCCC-ChHHHHHHHHHHhcCC
Q 026247 124 PGMTGYDLLKRLKVSSWK-DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV-RLSDLEKLQPRLLKSP 189 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~-~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~~l~~~ 189 (241)
|+++|+++++.|+.. + .+|||++|++.+.....++++.|+++||.||+ +.++|...+.+++.+.
T Consensus 69 ~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 69 SDKNALSFVSRIKEK--HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp CSTTHHHHHHHHHHH--STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cCccHHHHHHHHHhc--CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999965 6 89999999999999999999999999999999 9999999999988653
No 88
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.83 E-value=4.9e-20 Score=154.98 Aligned_cols=119 Identities=27% Similarity=0.450 Sum_probs=110.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~---------------------~~~~~dlvllD~~l~~~~ 62 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF---------------------DRAGADIVLLDLMLPGMS 62 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH---------------------HHHCCSEEEEESSCSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------hccCCCEEEEECCCCCCC
Confidence 36899999999999999999999999999999999999988 445799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++.. +.+|||++|++.+......+++.|+++||.||++.++|...+.+++.+.
T Consensus 63 g~~~~~~l~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 63 GTDVCKQLRAR--SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp HHHHHHHHHHH--CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcC--CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999963 6899999999988888999999999999999999999999999999764
No 89
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.83 E-value=4.2e-20 Score=169.88 Aligned_cols=117 Identities=25% Similarity=0.472 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+++|
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l---------------------~~~~~DlvllD~~mp~~dG 59 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL---------------------SEKHFNVVLLDLLLPDVNG 59 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHH---------------------HHSCCSEEEEESBCSSSBH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCCCCH
Confidence 4799999999999999999998999999999999999998 4567999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++++++++.. .+.+|||++|++.+.+...++++.||+|||.||++.++|...+.+++.
T Consensus 60 ~ell~~lr~~-~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 60 LEILKWIKER-SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp HHHHHHHHHH-CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 9999999954 478999999999999999999999999999999999999998888764
No 90
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.83 E-value=4.5e-20 Score=144.33 Aligned_cols=119 Identities=24% Similarity=0.429 Sum_probs=99.6
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhc-CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCC-CccEEEEeC
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVS-SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEES-RVNLIMTDY 121 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~-g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DlVllD~ 121 (241)
.....+||||||++..+..+..+|+.. ||.+. .+.++.+|++.+ ... .||+||+|+
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l---------------------~~~~~~dlvilD~ 68 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKL---------------------AAQPNVDLILLDI 68 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHH---------------------HHCTTCCEEEECT
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH---------------------hcCCCCCEEEEeC
Confidence 345668999999999999999999987 88865 899999999998 344 799999999
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEec--CCChHHHHHHHHcCCcceEeCCCC----------hHHHHHHHHHHh
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSS--ENVPSRVTMCLEEGAEEFLLKPVR----------LSDLEKLQPRLL 186 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa--~~~~~~~~~a~~~Ga~dyL~KP~~----------~~~L~~~i~~~l 186 (241)
.||+++|++++++||... ..|+|++|+ ........++++.|+++||.||++ ..+|..++++++
T Consensus 69 ~l~~~~g~~~~~~lr~~~--~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~l~~~i~~~~ 143 (145)
T 3kyj_B 69 EMPVMDGMEFLRHAKLKT--RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKTGGELARTMRTLM 143 (145)
T ss_dssp TSCCCTTCHHHHHHHHHC--CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcC--CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999643 388999987 556677889999999999999999 455566665554
No 91
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.83 E-value=1.6e-19 Score=138.10 Aligned_cols=121 Identities=23% Similarity=0.296 Sum_probs=108.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCC-CccEEEEeCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEES-RVNLIMTDYCMPG 125 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DlVllD~~mp~ 125 (241)
.+++||||||++..+..+...|...||.|..+.++.++++.+ ... .||+||+|+.||+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l---------------------~~~~~~dlvi~d~~l~~ 62 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEML---------------------KSGAAIDGVVTDIRFCQ 62 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------HTTCCCCEEEEESCCSS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH---------------------HcCCCCCEEEEeeeCCC
Confidence 357999999999999999999999999999999999999998 454 7999999999997
Q ss_pred -CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCCC
Q 026247 126 -MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNR 191 (241)
Q Consensus 126 -~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~~ 191 (241)
++|++++++++.. .+.+|||++|+..+......++..| +||.||++.++|...+.+++.+...
T Consensus 63 ~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 63 PPDGWQVARVAREI-DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp SSCHHHHHHHHHHH-CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHhc-CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999964 4789999999999888887777776 7999999999999999999876543
No 92
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.82 E-value=6.6e-20 Score=155.77 Aligned_cols=119 Identities=27% Similarity=0.515 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~dlvilD~~l~~~~g 64 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAV---------------------RELRPDLVLLDLMLPGMNG 64 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHH---------------------HHHCCSEEEEESSCSSSCH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH---------------------HhCCCCEEEEeCCCCCCCH
Confidence 5899999999999999999999999999999999999998 4557999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
+++++.++.. +.+|||++|+..+......+++.|+++||.||++.++|...+.+++.+..
T Consensus 65 ~~~~~~lr~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (238)
T 2gwr_A 65 IDVCRVLRAD--SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 124 (238)
T ss_dssp HHHHHHHHTT--CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999953 38999999999999999999999999999999999999999999987643
No 93
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.82 E-value=9e-20 Score=141.86 Aligned_cols=119 Identities=20% Similarity=0.349 Sum_probs=103.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-CcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVS-SYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~-g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++||||||++..+..+..+|... |+.+ ..+.++.+|++.+ ....||+||+|+.||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l---------------------~~~~~dlvi~d~~l~ 66 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFL---------------------QHNKVDAIFLDINIP 66 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHH---------------------HHCCCSEEEECSSCS
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH---------------------HhCCCCEEEEecCCC
Confidence 3579999999999999999999876 8884 5899999999998 456799999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+++|+++++.++. ..+..|||++|+.. +...++++.|+++||.||++.++|...+.+++...
T Consensus 67 ~~~g~~~~~~l~~-~~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 67 SLDGVLLAQNISQ-FAHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp SSCHHHHHHHHTT-STTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-cCCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999995 34667899998874 46778999999999999999999999999988654
No 94
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.82 E-value=7.7e-20 Score=142.19 Aligned_cols=118 Identities=19% Similarity=0.331 Sum_probs=102.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.++||||||++..+..+..+|+..|+.+..+.++.++++.+ ....||+||+|+.||+++
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l---------------------~~~~~dlvllD~~lp~~~ 68 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAY---------------------QNRQFDVIIMDIQMPVMD 68 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHH---------------------HHSCCSEEEECTTCCSSC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHH---------------------hcCCCCEEEEeCCCCCCc
Confidence 35899999999999999999998899999999999999998 456799999999999999
Q ss_pred HHHHHHHHhhc----CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVS----SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~----~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|++++++|+.. ..+.+|||++|+........ ++|+++||.||++.++|...+.+++.+.
T Consensus 69 g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 69 GLEAVSEIRNYERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 99999999853 24678999999876544432 7899999999999999999999998654
No 95
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.82 E-value=1.1e-19 Score=135.20 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=104.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
.+||||||++..+..+...|...||.|..+.++.++++.+ ....||+||+|+.||+++|
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l---------------------~~~~~dlii~d~~~~~~~~ 60 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQL---------------------DLLQPIVILMAWPPPDQSC 60 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH---------------------HHHCCSEEEEECSTTCCTH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHH---------------------HhcCCCEEEEecCCCCCCH
Confidence 5899999999999999999999999999999999999998 4457999999999999999
Q ss_pred HHHHHHHhhcC-CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSS-WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~-~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+++++.++... .+.+|||++|+..... .++..|+++||.||++.++|...+.+++.
T Consensus 61 ~~~~~~l~~~~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 61 LLLLQHLREHQADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp HHHHHHHHHTCCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhccccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 99999999653 3789999999987766 89999999999999999999998887664
No 96
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.82 E-value=1.3e-20 Score=158.87 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=106.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhh-cCcEEEE-ECCHHHHHH-HHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRV-SSYQVTC-VDSGDKALE-YLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~-~g~~V~~-~~~~~eal~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
...++||||||++..+..+..+|+. .||.+.. +.++.+++. ++ ....||+||+|+.
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~---------------------~~~~~dlvllD~~ 63 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP---------------------ESRSIQMLVIDYS 63 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS---------------------GGGGCCEEEEEGG
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh---------------------hccCCCEEEEeCC
Confidence 3467999999999999999999984 6898865 455666554 34 4567999999999
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCCC
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPN 190 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~~ 190 (241)
||+++|++++++||....+.+|||++|++.+......+++.|+++||.||++.++|...+.+++++..
T Consensus 64 mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 64 RISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp GCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 99999999999999523578999999999998899999999999999999999999999999997654
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.82 E-value=2.3e-19 Score=144.12 Aligned_cols=120 Identities=25% Similarity=0.350 Sum_probs=103.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcC-cE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSS-YQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g-~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++||||||++..+..+..+|...| +. +..+.++.+|++.+ ....||+||+|+.||
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l---------------------~~~~~dlvilD~~l~ 82 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKA---------------------IELKPDVITMDIEMP 82 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH---------------------HHHCCSEEEECSSCS
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHh---------------------ccCCCCEEEEeCCCC
Confidence 35799999999999999999999875 34 45799999999998 455799999999999
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChH--HHHHHHHcCCcceEeCCCC---------hHHHHHHHHHHhcCC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPS--RVTMCLEEGAEEFLLKPVR---------LSDLEKLQPRLLKSP 189 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~--~~~~a~~~Ga~dyL~KP~~---------~~~L~~~i~~~l~~~ 189 (241)
+++|++++++|+... + +|||++|+..+.. ...++++.|+++||.||++ ..+|...+++++...
T Consensus 83 ~~~g~~l~~~lr~~~-~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~ 156 (164)
T 3t8y_A 83 NLNGIEALKLIMKKA-P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVD 156 (164)
T ss_dssp SSCHHHHHHHHHHHS-C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHhcC-C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCC
Confidence 999999999999643 4 8999999977654 6779999999999999999 688888888887644
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1.5e-20 Score=158.92 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-cEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSS-YQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g-~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
++||||||++..+..+..+|...| |.+ ..+.++.+|++.+ ....||+||+|+.||++
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l---------------------~~~~~dlvllD~~lp~~ 60 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARV---------------------PAARPDVAVLDVRLPDG 60 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHH---------------------HHHCCSEEEECSEETTE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH---------------------hhcCCCEEEEeCCCCCC
Confidence 689999999999999999999876 885 4799999999998 44579999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
+|++++++++.. .+.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+.
T Consensus 61 ~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 61 NGIELCRDLLSR-MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp EHHHHHHHHHHH-CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHh-CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999954 57899999999999999999999999999999999999999999998754
No 99
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.81 E-value=1.3e-19 Score=162.27 Aligned_cols=118 Identities=21% Similarity=0.354 Sum_probs=106.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHh-hcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLR-VSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~-~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..+||||||++..+..+..+|. ..||.|..+.++.+|++.+ ....||+||+|+.||+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~---------------------~~~~~dlvl~D~~mp~~ 76 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVA---------------------NQIKPTVILQDLVMPGV 76 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHH---------------------HHHCCSEEEEESBCSSS
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHH---------------------HhCCCCEEEEeCCCCCC
Confidence 4579999999999999999996 4689999999999999998 45579999999999999
Q ss_pred CHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 127 TGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 127 ~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+|++++++||.. ..+.+|||++|++.+.....++++.|+++||.||++..+|...+..++
T Consensus 77 ~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~ 137 (358)
T 3bre_A 77 DGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHS 137 (358)
T ss_dssp BHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHH
Confidence 999999999964 357899999999999999999999999999999999999988877653
No 100
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.80 E-value=1.7e-19 Score=139.65 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=102.9
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccC-CCccEEEEeCC
Q 026247 44 QQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE-SRVNLIMTDYC 122 (241)
Q Consensus 44 ~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVllD~~ 122 (241)
......+||||||++..+..+..+|+..||.|..+.++.+|++.+ .. ..||+||+|+.
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~~dlvilD~~ 69 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHR---------------------SQLSTCDLLIVSDQ 69 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTG---------------------GGGGSCSEEEEETT
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH---------------------HhCCCCCEEEEeCC
Confidence 445567999999999999999999999999999999999999988 45 67999999999
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEe-cCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMS-SENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~ls-a~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
||+++|+++++.++. ..+.+|||++| +..+... .+++ +++||.||++.++|...+.+++..
T Consensus 70 l~~~~g~~~~~~l~~-~~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 70 LVDLSIFSLLDIVKE-QTKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CTTSCHHHHHHHHTT-SSSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHh-hCCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 999999999999995 45789999999 8876666 6665 999999999999999999988754
No 101
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.80 E-value=2.2e-21 Score=146.50 Aligned_cols=119 Identities=27% Similarity=0.417 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+|||+||++..+..+...|...||.+..+.++.++++.+ ....||+||+|+.||+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~dlvi~d~~~~~~~ 61 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL---------------------ASKTPDVLLSDIRMPGMD 61 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHS---------------------SSCCCSCEEECSCSSHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH---------------------hcCCCCEEEEeeecCCCC
Confidence 45799999999999999999998999999999999999988 566799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|++++++++.. .+.+|||++|++.+.....++++.|+++|+.||++.++|...+.+++.+
T Consensus 62 g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 62 GLALLKQIKQR-HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp HCSTHHHHHHH-CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 99999999854 4789999999998888888999999999999999999999999988753
No 102
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.80 E-value=6e-19 Score=147.55 Aligned_cols=117 Identities=20% Similarity=0.303 Sum_probs=107.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+++||||||++..+..+..+|...| .|..+.++.+|++.+ ..||+||+|+.||+++
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-----------------------~~~dlvllD~~lp~~~ 57 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-----------------------EAFHVVVLDVMLPDYS 57 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-----------------------SCCSEEEEESBCSSSB
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-----------------------CCCCEEEEeCCCCCCC
Confidence 3689999999999999999999888 899999999998753 4699999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|+++++.++... +.+|||++|++.+.....++++.|+++||.||++.++|...+.+++.+.
T Consensus 58 g~~~~~~lr~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 58 GYEICRMIKETR-PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC-CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999543 7899999999999999999999999999999999999999999998764
No 103
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.80 E-value=1e-18 Score=146.33 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+|| ||+++|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l---------------------~~~~~dlvi----lp~~~g 55 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLM---------------------DIRNYDLVM----VSDKNA 55 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHH---------------------TTSCCSEEE----ECCTTH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHH---------------------hcCCCCEEE----eCCCCH
Confidence 4799999999999999999999999999999999999998 566899999 999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC-ChHHHHHHHHHHhcCC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV-RLSDLEKLQPRLLKSP 189 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~-~~~~L~~~i~~~l~~~ 189 (241)
+++++.|+.. ...+|||++|++.+......+++.|+++||.||+ +.++|...+.+++++.
T Consensus 56 ~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 56 LSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp HHHHHHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhC-CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9999999965 3389999999999999999999999999999999 9999999999998764
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.79 E-value=1.9e-19 Score=165.43 Aligned_cols=120 Identities=23% Similarity=0.296 Sum_probs=106.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccC-CCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRV-SSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE-SRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~-~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVllD~~mp~ 125 (241)
.++||||||++..+..+..+|+. .|+.|..+.++.+|++.+ .. ..||+||+|+.||+
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l---------------------~~~~~~DlvllDi~mP~ 61 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAIL---------------------ESCGHVDIAICDLQMSG 61 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHH---------------------HHHSCEEEEEECSSCSS
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHH---------------------hhCCCCCEEEEeCCCCC
Confidence 46999999999999999999987 578999999999999998 44 47999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCCh-----HHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVP-----SRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~-----~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
|||+++++++|.. .+.+|||++|++... ....++++.|+++||.||++.++|...+.+++...
T Consensus 62 ~dG~ell~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 62 MDGLAFLRHASLS-GKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp SCHHHHHHHHHHH-TCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhc-CCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 9999999999954 356778777877766 66778999999999999999999999999988654
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.78 E-value=5.7e-19 Score=145.37 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=101.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
..++||||||++..+..+..+|...||.|..+.++.+++ ...||+||+|+.||++
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al-------------------------~~~~dlvl~D~~mp~~ 65 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-------------------------DVPVDVVFTSIFQNRH 65 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC-------------------------SSCCSEEEEECCSSTH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC-------------------------CCCCCEEEEeCCCCcc
Confidence 357999999999999999999999999999887776643 2469999999999999
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+|+ +++.++... +.+|||++|++.+.+...++++.|+++||.||++.++|...+..++.
T Consensus 66 ~g~-l~~~~~~~~-~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 66 HDE-IAALLAAGT-PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp HHH-HHHHHHHSC-TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred chH-HHHHHhccC-CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 999 888888543 78999999999999999999999999999999999999998887764
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.74 E-value=2.3e-17 Score=149.93 Aligned_cols=119 Identities=25% Similarity=0.328 Sum_probs=104.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CcE-EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS-SYQ-VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~-g~~-V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
+++||||||++..+..+..+|+.. ||+ |..+.++.+|++.+ ....||+||+|+.||+
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l---------------------~~~~pDlVllDi~mp~ 61 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLI---------------------KKFNPDVLTLDVEMPR 61 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH---------------------HHHCCSEEEEECCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH---------------------hccCCCEEEEECCCCC
Confidence 479999999999999999999976 898 56899999999998 4557999999999999
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCCh--HHHHHHHHcCCcceEeCCCCh---------HHHHHHHHHHhcCC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVP--SRVTMCLEEGAEEFLLKPVRL---------SDLEKLQPRLLKSP 189 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~--~~~~~a~~~Ga~dyL~KP~~~---------~~L~~~i~~~l~~~ 189 (241)
++|++++++|+.. .+ +|||++|+..+. +...++++.|++|||.||++. ++|...++++.+..
T Consensus 62 ~dGlell~~l~~~-~p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 62 MDGLDFLEKLMRL-RP-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp SCHHHHHHHHHHS-SC-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhc-CC-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 9999999999954 34 999999998765 458899999999999999984 78888888877643
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.73 E-value=6.9e-18 Score=146.41 Aligned_cols=103 Identities=19% Similarity=0.339 Sum_probs=86.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-cCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRV-SSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~-~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.+||||||++..+..+...|.. .|+.+..+. +.+++..+ ....||+||+|+.||+++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~-~~~~~~~~---------------------~~~~~dlvllD~~mP~~~ 62 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFD-TLEGARHC---------------------QGDEYVVALVDLTLPDAP 62 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEES-STGGGTTC---------------------CTTTEEEEEEESCBTTBT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeC-hHHHHHHh---------------------hcCCCcEEEEeCCCCCCC
Confidence 5899999999999999999965 578876554 44554444 445799999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChH
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLS 176 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~ 176 (241)
|+++++++|. ..+|||++|++.+.+...+++++||+|||.||+..+
T Consensus 63 G~~~~~~lr~---~~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 63 SGEAVKVLLE---RGLPVVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp TSHHHHHHHH---TTCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred HHHHHHHHHh---CCCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 9999999995 258999999999999999999999999999997543
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.68 E-value=4e-17 Score=161.70 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=105.7
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCC-CccEEEE
Q 026247 49 FHVLAVDDSL-ID-------RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEES-RVNLIMT 119 (241)
Q Consensus 49 ~~VLIVDDd~-~~-------~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DlVll 119 (241)
++||||||+. .. +..|...|+..||+|..+.++++|+..+ ... .||+||+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~---------------------~~~~~~d~vil 59 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL---------------------SSNEAIDCLMF 59 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH---------------------TTTCCCSEEEE
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH---------------------hcCCCCcEEEE
Confidence 4899999999 88 9999999999999999999999999998 444 5999999
Q ss_pred eCCCCC----CCHHHHHHHHhhcCCCCCcEEEEecCCC-hHHHHHHHHcCCcceEeCCCChHH-HHHHHHHHhcC
Q 026247 120 DYCMPG----MTGYDLLKRLKVSSWKDVPVVVMSSENV-PSRVTMCLEEGAEEFLLKPVRLSD-LEKLQPRLLKS 188 (241)
Q Consensus 120 D~~mp~----~~G~el~~~lr~~~~~~~pII~lsa~~~-~~~~~~a~~~Ga~dyL~KP~~~~~-L~~~i~~~l~~ 188 (241)
|+.||+ ++|++++++||... +.+||+++|+... .++....+..|++|||.|||+..+ |...|.+++++
T Consensus 60 Di~lp~~~~~~~G~~ll~~iR~~~-~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 60 SYQMEHPDEHQNVRQLIGKLHERQ-QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp ECCCCSHHHHHHHHHHHHHHHHHS-TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred eCCCCcccccccHHHHHHHHHHhC-CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 999999 99999999999653 6899999999877 778888999999999999999999 76777776654
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.25 E-value=1.5e-10 Score=107.02 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=98.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
..+|++|||+......+...|.. .+.+....++.+++ .. ....||+|++|+.||+|+
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~-~~---------------------~~~~~dlil~D~~mp~~d 208 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAK-IS---------------------AGGPVDLVIVNAAAKNFD 208 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHH-HH---------------------HHSSCSEEEEETTCSSSC
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHh-hh---------------------ccCCCCEEEEecCCCCCc
Confidence 45899999999998888888864 46677788888875 33 345699999999999999
Q ss_pred HHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 128 GYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 128 G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|+++++.+|.. ....+||+++|+.........+++.|+++|+.||+...++...+..++.
T Consensus 209 G~~~~~~ir~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~ 269 (459)
T 1w25_A 209 GLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp HHHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHH
Confidence 99999999864 3467899999999999999999999999999999999998877666553
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.22 E-value=5e-12 Score=105.70 Aligned_cols=93 Identities=22% Similarity=0.351 Sum_probs=77.7
Q ss_pred cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCC
Q 026247 73 YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSEN 152 (241)
Q Consensus 73 ~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~ 152 (241)
+.|..+.++.+|++.+ ....||+||+|+.||+++|++++++||... +..++++++...
T Consensus 6 ~~v~~~~~~~~a~~~~---------------------~~~~~dlvl~D~~~p~~~g~~~~~~l~~~~-~~~~i~vi~~~~ 63 (237)
T 3cwo_X 6 LIVDDATNGREAVEKY---------------------KELKPDIVTMDITMPEMNGIDAIKEIMKID-PNAKIIVCSAMG 63 (237)
T ss_dssp EEEECCCSSSTTHHHH---------------------HHHCCSCEEEECCSTTSSHHHHHHHHHHHS-SSCCEEEECCSS
T ss_pred EEEEECCCHHHHHHHH---------------------HhcCCCEEEEeCCCCCCCHHHHHHHHHHhC-CCCCEEEEECCC
Confidence 5566788999999988 455799999999999999999999998542 455666777666
Q ss_pred ChHHHHHHHHcCCcceEeCC--CChHHHHHHHHHHhc
Q 026247 153 VPSRVTMCLEEGAEEFLLKP--VRLSDLEKLQPRLLK 187 (241)
Q Consensus 153 ~~~~~~~a~~~Ga~dyL~KP--~~~~~L~~~i~~~l~ 187 (241)
..+...++++.|+++|+.|| ++..++...+.+.+.
T Consensus 64 ~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 64 QQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFG 100 (237)
T ss_dssp THHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhC
Confidence 68889999999999999999 788888888877764
No 111
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.83 E-value=4.5e-05 Score=64.99 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=71.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+.+||||||+...+..+.++|..+|++|..+.+ . ....||++|+|+.+|.
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~---------------------~~~~~~~ii~d~~~~~ 60 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------Q---------------------EPTPEDVLITDEVVSK 60 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------C---------------------CCCTTCEEEEESSCSC
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------C---------------------CCCcCcEEEEcCCCcc
Confidence 45679999999999999999999999999988764 1 2356999999999987
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..+. ..++.++....... ...+...++.||+...++...+.++..
T Consensus 61 ~~~~-------------~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 61 KWQG-------------RAVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp CCCS-------------SEEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred cccc-------------ceEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHHhh
Confidence 5431 12455554321110 123455789999999999988888764
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.38 E-value=8.4e-05 Score=73.18 Aligned_cols=93 Identities=12% Similarity=0.166 Sum_probs=71.7
Q ss_pred HHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCC
Q 026247 62 KILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWK 141 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~ 141 (241)
..|...|+..||+|..+.++++|+..+. .+..+++||+||.++ +.+++++||.. ..
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~--------------------~~~~i~avIld~d~~---~~~ll~~Ir~~-~~ 75 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIE--------------------NNARLCGVIFDWDKY---NLELCEEISKM-NE 75 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHH--------------------HCTTEEEEEEEHHHH---HHHHHHHHHHH-CT
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHH--------------------hCCCceEEEEecccc---HHHHHHHHHHh-CC
Confidence 3455778889999999999999999994 456799999999986 78899999954 47
Q ss_pred CCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHH
Q 026247 142 DVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDL 178 (241)
Q Consensus 142 ~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L 178 (241)
++||++++.......+....-.++++|+.+..+..++
T Consensus 76 ~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (715)
T 3n75_A 76 NLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAED 112 (715)
T ss_dssp TCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCHHH
T ss_pred CCCEEEEecCCcccccchhhhhccCeEEEeCCCCHHH
Confidence 9999999887543333221235788999987755544
No 113
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.13 E-value=0.0049 Score=45.92 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=81.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.....||+|..|-...-.+++++....|.++..... ..+..-|+|+|.+.+-.
T Consensus 10 ~~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~---------------------------~~e~~AdlIfCEYlLLP 62 (121)
T 3q7r_A 10 AGPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQY---------------------------KQELSADLVVCEYSLLP 62 (121)
T ss_dssp CCCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSC---------------------------CCCTTEEEEEEEGGGSC
T ss_pred CCCcEEEEEecCchhhHHHHHhcCCcceeEEecccc---------------------------CCcccceeEEEeeecCh
Confidence 344579999999999999999998888988875321 13456799999997633
Q ss_pred CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 126 MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 126 ~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+.|.+. .....-+|++-..-+.+...+.++.||. ||.+|++..-+..+|+..++
T Consensus 63 -------e~ifS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLr 117 (121)
T 3q7r_A 63 -------REIRSPKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLS 117 (121)
T ss_dssp -------TTCCCCTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHH
T ss_pred -------HHhcCCCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHh
Confidence 123322 2234456667666778889999999999 99999999999999988875
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.09 E-value=0.013 Score=46.81 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=84.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEE---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE
Q 026247 47 ETFHVLAV----DDSLIDRKILENLLRVSSYQVTCV---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 47 ~~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
...+|++. |-|.+-..++..+|+..||+|... -..++.++.+ ....+|+|.+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa---------------------~~~~~diV~l 75 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAA---------------------VQEDVDVIGV 75 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHH---------------------HHTTCSEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HhcCCCEEEE
Confidence 34588888 888888999999999999999853 4677777777 5678999999
Q ss_pred eCCCCC-C-CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 120 DYCMPG-M-TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 120 D~~mp~-~-~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
-..+.. + .-.++++.||....++++|+ +-+.........+.+.|+++++..-.+..+....+.+++.
T Consensus 76 S~~~~~~~~~~~~~i~~L~~~g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 76 SILNGAHLHLMKRLMAKLRELGADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp EESSSCHHHHHHHHHHHHHHTTCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred EeechhhHHHHHHHHHHHHhcCCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHH
Confidence 887654 1 23456667775433467765 4555555555567789999866655555666677776664
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.48 E-value=0.0068 Score=49.59 Aligned_cols=70 Identities=13% Similarity=0.301 Sum_probs=54.8
Q ss_pred CCccEEEEeC-CCCCCCHHH--HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE------eCCCChHHHHHHH
Q 026247 112 SRVNLIMTDY-CMPGMTGYD--LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL------LKPVRLSDLEKLQ 182 (241)
Q Consensus 112 ~~~DlVllD~-~mp~~~G~e--l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL------~KP~~~~~L~~~i 182 (241)
...+++++++ .++.++|+. ++++++.. .++|||++++....+...++++.|+++++ .+|++..++...+
T Consensus 143 ~~~~vli~~~~~~g~~~g~~~~~i~~~~~~--~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l 220 (237)
T 3cwo_X 143 GAGEILLTSIDRDGTKSGYDTEMIRFVRPL--TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYL 220 (237)
T ss_dssp TCSEEEEEETTTTTCCSCCCHHHHHHHGGG--CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCCeEEEEecCCCCccccccHHHHHHHHHh--cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHH
Confidence 3456889997 677777754 55665532 47999999999999999999999999985 7888888877654
Q ss_pred H
Q 026247 183 P 183 (241)
Q Consensus 183 ~ 183 (241)
.
T Consensus 221 ~ 221 (237)
T 3cwo_X 221 K 221 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=96.04 E-value=0.12 Score=39.99 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=78.0
Q ss_pred EEEEE----eCCHHHHHHHHHHHhhcCcEEEE---ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAV----DDSLIDRKILENLLRVSSYQVTC---VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIV----DDd~~~~~~l~~~L~~~g~~V~~---~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
+|++. |-|..-..++..+|+..||+|.. .-..++.++.+ .+..+|+|.+-..
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a---------------------~~~~~d~v~lS~~ 63 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAA---------------------IETKADAILVSSL 63 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHH---------------------HHHTCSEEEEEEC
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HhcCCCEEEEEec
Confidence 55555 56677778889999999999983 45788888877 4568999999887
Q ss_pred CCCCC--HHHHHHHHhhcCCCCCcEEEEecCC---C---hHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 123 MPGMT--GYDLLKRLKVSSWKDVPVVVMSSEN---V---PSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 123 mp~~~--G~el~~~lr~~~~~~~pII~lsa~~---~---~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+.... --++++.+++....+++|+ +-+.. . ......+.+.|++.|+.--.+..+....+...+
T Consensus 64 ~~~~~~~~~~~i~~l~~~g~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 64 YGQGEIDCKGLRQKCDEAGLEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp SSTHHHHHTTHHHHHHHTTCTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHhcCCCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 74311 2346667775443466664 44432 1 112456889999999876667777766665554
No 117
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=93.91 E-value=0.52 Score=40.70 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-----CCHHHHHHHHh
Q 026247 64 LENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-----MTGYDLLKRLK 136 (241)
Q Consensus 64 l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-----~~G~el~~~lr 136 (241)
..+.|...||.|. ++.+...|.++. +-.+++| +.+..|- ...+++++.++
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~----------------------~~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~ 183 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLA----------------------EIGCIAV-MPLAGLIGSGLGICNPYNLRIIL 183 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHH----------------------HSCCSEE-EECSSSTTCCCCCSCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHH----------------------HhCCCEE-EeCCccCCCCCCcCCHHHHHHHH
Confidence 3444555799876 667777775553 4457777 6666552 22378889998
Q ss_pred hcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 137 VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 137 ~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.. .++|||+=..-...++...+++.|+++.+.=
T Consensus 184 e~--~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVg 216 (265)
T 1wv2_A 184 EE--AKVPVLVDAGVGTASDAAIAMELGCEAVLMN 216 (265)
T ss_dssp HH--CSSCBEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred hc--CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 53 6799998777788999999999999998643
No 118
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.79 E-value=0.94 Score=38.01 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=61.7
Q ss_pred HHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC------CCCCCHHHHHH
Q 026247 61 RKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC------MPGMTGYDLLK 133 (241)
Q Consensus 61 ~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~------mp~~~G~el~~ 133 (241)
...+.+.+++.|..+. .+.+.+++.... ...+|+|.+... .+...++++++
T Consensus 118 l~~~i~~~~~~g~~v~~~v~t~eea~~a~----------------------~~Gad~Ig~~~~g~t~~~~~~~~~~~li~ 175 (229)
T 3q58_A 118 IDSLLTRIRLHGLLAMADCSTVNEGISCH----------------------QKGIEFIGTTLSGYTGPITPVEPDLAMVT 175 (229)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHH----------------------HTTCSEEECTTTTSSSSCCCSSCCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEecCCHHHHHHHH----------------------hCCCCEEEecCccCCCCCcCCCCCHHHHH
Confidence 3344444566787654 578999987765 345788864221 22345688999
Q ss_pred HHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 134 RLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 134 ~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+++.. ++|||.-.+-.+.+.+.+++..|+++++.=
T Consensus 176 ~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 176 QLSHA---GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HHHTT---TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 98842 799999888888999999999999999763
No 119
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=92.58 E-value=1.9 Score=42.60 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=83.2
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEE---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 46 QETFHVLAV----DDSLIDRKILENLLRVSSYQVTCV---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 46 ~~~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
....+|++. |.|..-..++..+|+..||+|... .+.++.++.. .+..+|+|.
T Consensus 602 g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA---------------------~e~~adiVg 660 (762)
T 2xij_A 602 GRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQA---------------------VDADVHAVG 660 (762)
T ss_dssp SSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---------------------HHTTCSEEE
T ss_pred CCCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHH---------------------HHcCCCEEE
Confidence 345688887 667777788888999999999864 3567777776 566799999
Q ss_pred EeCCCCC-C-CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 119 TDYCMPG-M-TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 119 lD~~mp~-~-~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+-..|.. + ..-++++.|+.....+++| ++-+-.-..+...+.+.|+++|+..-.+..+....+..++
T Consensus 661 lSsl~~~~~~~~~~vi~~Lr~~G~~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l 729 (762)
T 2xij_A 661 VSTLAAGHKTLVPELIKELNSLGRPDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDI 729 (762)
T ss_dssp EEECSSCHHHHHHHHHHHHHHTTCTTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHH
T ss_pred EeeecHHHHHHHHHHHHHHHhcCCCCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHH
Confidence 8877653 2 2456777788654445544 3443222334556789999999986667777776666665
No 120
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=92.41 E-value=0.68 Score=37.88 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=67.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+||+. |-|.+-..++..+|+..||+|...+ ..++.++.+ ....||+|.+-
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~---------------------~~~~~d~v~lS 146 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAV---------------------KKYQPDIVGMS 146 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHH---------------------HHHCCSEEEEE
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEe
Confidence 4478888 7888888999999999999998654 456666666 45679999999
Q ss_pred CCCCC-CC-HHHHHHHHhhcCC-CCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 121 YCMPG-MT-GYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 121 ~~mp~-~~-G~el~~~lr~~~~-~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..+.. +. -.++++.+|.... +++||++--...+.+. +...|++.|-.
T Consensus 147 ~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 147 ALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp CCSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred ccccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 87754 22 2356677775432 4577765544333332 35679986653
No 121
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=92.29 E-value=1.8 Score=42.58 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=82.6
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 46 QETFHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 46 ~~~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
....+|++. |-|..-..++..+|+..||+|...+ +.++.++.. .+..+|+|.
T Consensus 594 g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA---------------------~e~~adiVg 652 (727)
T 1req_A 594 GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQA---------------------VEADVHVVG 652 (727)
T ss_dssp SSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHH---------------------HHTTCSEEE
T ss_pred CCCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH---------------------HHcCCCEEE
Confidence 345688887 6777777888889999999998643 567777777 567899999
Q ss_pred EeCCCCC-C-CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 119 TDYCMPG-M-TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 119 lD~~mp~-~-~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+-..|.. + ..-++++.|+.....+++| ++-+-.-......+.+.|+++|+.--.+..++...+...+
T Consensus 653 lSsl~~~~~~~~~~vi~~L~~~G~~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l 721 (727)
T 1req_A 653 VSSLAGGHLTLVPALRKELDKLGRPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp EEECSSCHHHHHHHHHHHHHHTTCTTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred EeeecHhHHHHHHHHHHHHHhcCCCCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHH
Confidence 9887653 2 2456777888654445444 4444333445566789999999986666666665555444
No 122
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=92.22 E-value=0.83 Score=37.95 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=68.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEE-
Q 026247 48 TFHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMT- 119 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVll- 119 (241)
..+|++. |-|.+=..++..+|+..||+|+..+ ..++.++.+ .+..||+|.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~---------------------~~~~~d~v~l~ 150 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEA---------------------AKHKGEKVLLV 150 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHH---------------------HHTTTSCEEEE
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHH---------------------HHcCCCEEEEE
Confidence 3478887 7788888899999999999998654 567777777 5678999999
Q ss_pred -eCCCCC-CC-HHHHHHHHhhcCC-CCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 120 -DYCMPG-MT-GYDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 120 -D~~mp~-~~-G~el~~~lr~~~~-~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-..|.. +. --++++.++.... .++||++=-+....+ -+.+.|+|.|-.
T Consensus 151 ~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~---~a~~iGad~~~~ 202 (215)
T 3ezx_A 151 GSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDK---WIEEIGADATAE 202 (215)
T ss_dssp EECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHH---HHHHHTCCBCCS
T ss_pred chhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHH---HHHHhCCeEEEC
Confidence 877743 33 3456777775432 267776554434433 245679988854
No 123
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=91.93 E-value=1.5 Score=37.21 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=76.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEE---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAV----DDSLIDRKILENLLRVSSYQVTCV---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+||+. |-|..=..++..+|+..||+|... -..++.++.+ ....||+|.+-
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~---------------------~~~~~d~V~lS 181 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAV---------------------QKEKPIMLTGT 181 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHH---------------------HHHCCSEEEEE
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEE
Confidence 4578888 778888899999999999999743 3566666666 45679999999
Q ss_pred CCCCC-CC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 121 YCMPG-MT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 121 ~~mp~-~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..+.. +. --++++.++.. .+.+||++--.....+. +...|++.|-. +..+....+.+++.
T Consensus 182 ~l~~~~~~~~~~~i~~l~~~-~~~~~v~vGG~~~~~~~---~~~igad~~~~---da~~av~~~~~l~~ 243 (258)
T 2i2x_B 182 ALMTTTMYAFKEVNDMLLEN-GIKIPFACGGGAVNQDF---VSQFALGVYGE---EAADAPKIADAIIA 243 (258)
T ss_dssp CCCTTTTTHHHHHHHHHHTT-TCCCCEEEESTTCCHHH---HHTSTTEEECS---STTHHHHHHHHHHT
T ss_pred eeccCCHHHHHHHHHHHHhc-CCCCcEEEECccCCHHH---HHHcCCeEEEC---CHHHHHHHHHHHHc
Confidence 87764 33 34577788753 34577765544334332 34789876654 33555666777764
No 124
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=91.49 E-value=1.6 Score=36.65 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC------CCCCCHHHHHH
Q 026247 61 RKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC------MPGMTGYDLLK 133 (241)
Q Consensus 61 ~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~------mp~~~G~el~~ 133 (241)
...+.+.+++.|..+. .+.+.+++.... ...+|+|.+... .+...++++++
T Consensus 118 l~~~i~~~~~~g~~v~~~v~t~eea~~a~----------------------~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~ 175 (232)
T 3igs_A 118 VEALLARIHHHHLLTMADCSSVDDGLACQ----------------------RLGADIIGTTMSGYTTPDTPEEPDLPLVK 175 (232)
T ss_dssp HHHHHHHHHHTTCEEEEECCSHHHHHHHH----------------------HTTCSEEECTTTTSSSSSCCSSCCHHHHH
T ss_pred HHHHHHHHHHCCCEEEEeCCCHHHHHHHH----------------------hCCCCEEEEcCccCCCCCCCCCCCHHHHH
Confidence 3344445566786654 578888887765 345788864221 12344688899
Q ss_pred HHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 134 RLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 134 ~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+++.. ++|||.-.+-.+.+.+.++++.|+++++.
T Consensus 176 ~l~~~---~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 176 ALHDA---GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHHHT---TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHhc---CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 98852 79999888888899999999999999875
No 125
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.65 E-value=0.84 Score=40.66 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=72.3
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhh---cCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRV---SSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~---~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
+.-.+++.|+|.|+.....|.+++.. ..|++..|++.+.+.+++ ....+|++|+|-
T Consensus 18 ~~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~---------------------~~~~~dilli~e 76 (373)
T 3fkq_A 18 QGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESV---------------------KEYRIDVLIAEE 76 (373)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHH---------------------HHHTCSEEEEET
T ss_pred cCceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH---------------------hcCCCCEEEEcc
Confidence 34567999999999999999999963 358999999999999998 456899999998
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+..-. ..+ ....++++++.....+. ..-...+.|--+.+.+...+....
T Consensus 77 ~~~~~~-----~~~----~~~~~v~~l~~~~~~~~------~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 77 DFNIDK-----SEF----KRNCGLAYFTGTPGIEL------IKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp TCCCCG-----GGG----CSSCEEEEEESCTTCCE------ETTEEEEETTSCHHHHHHHHHHHH
T ss_pred hhhhhh-----hhh----cccCcEEEEECCCCCCc------CCCCceeeccCCHHHHHHHHHHHH
Confidence 876521 111 12345666655432111 111135778778877776665554
No 126
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=89.34 E-value=1.8 Score=42.07 Aligned_cols=117 Identities=8% Similarity=0.120 Sum_probs=77.4
Q ss_pred ccEEEEE----eCCHHHHHH----HHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccE
Q 026247 48 TFHVLAV----DDSLIDRKI----LENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNL 116 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~----l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 116 (241)
..+|++. |-|..=... +..+|+..||+|+..+ ..++.++.+ .+..+|+
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA---------------------~EedADV 660 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAA---------------------IELKADA 660 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHH---------------------HHTTCSE
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCE
Confidence 4588888 444444432 3578999999998644 677888777 5678999
Q ss_pred EEEeCCCCC----CCHH-HHHHHHhhcCCCC-CcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 117 IMTDYCMPG----MTGY-DLLKRLKVSSWKD-VPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 117 VllD~~mp~----~~G~-el~~~lr~~~~~~-~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
|.+...|.. +..+ ++++.|++....+ ++|+ +-+..-... -+...|++.|..-.....++...+...+..
T Consensus 661 VGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVI-VGGa~~tqd--~AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 661 ILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIG-CGGTQVTPE--VAVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp EEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEE-EECTTCCHH--HHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEE-EECCCCCHH--HHHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 999988876 3333 4667777554333 5554 444332333 345899999988877777777666555543
No 127
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=89.16 E-value=4.8 Score=34.56 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=64.1
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-
Q 026247 50 HVLAVDD--SLIDRKILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG- 125 (241)
Q Consensus 50 ~VLIVDD--d~~~~~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~- 125 (241)
-|+|+.. +......+.......|..+ ..+++.+++...+. ..+|+|-+.-.-..
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~----------------------~Gad~IGv~~r~l~~ 195 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALK----------------------AGAKVIGVNARDLMT 195 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----------------------HTCSEEEEESBCTTT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----------------------CCCCEEEECCCcccc
Confidence 4666432 2223333445556688875 46788888766551 24677776532111
Q ss_pred -CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 126 -MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 126 -~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.-+++.+.++......++|+|+-++-.+.+.+.++.++|++++++=
T Consensus 196 ~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 196 LDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 1135666777643323789999888888999999999999999874
No 128
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=88.52 E-value=5 Score=34.47 Aligned_cols=114 Identities=9% Similarity=0.120 Sum_probs=75.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHH--------Hhhc-CcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccC
Q 026247 48 TFHVLAV----DDSLIDRKILENL--------LRVS-SYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEE 111 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~--------L~~~-g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (241)
..+|++. |-|.+=..++..+ |+.. ||+|+..+ ..++.++.+ .+
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa---------------------~e 178 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKA---------------------VE 178 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHH---------------------HH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHH---------------------HH
Confidence 4567665 6777777778878 9999 99998643 667777776 56
Q ss_pred CCccEEEEeCCCCC----CCH-HHHHHHHhhcCC-CCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 112 SRVNLIMTDYCMPG----MTG-YDLLKRLKVSSW-KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 112 ~~~DlVllD~~mp~----~~G-~el~~~lr~~~~-~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
..+|+|.+-..+.. +.. -++++.++.... .+++|+ +-+.... ...+.+.|++.|..--....++...+...
T Consensus 179 ~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vi-vGG~~~~--~~~a~~iGad~~~~da~~~~~~a~~l~~~ 255 (262)
T 1xrs_B 179 LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLL-CGGPRIN--NEIAKELGYDAGFGPGRFADDVATFAVKT 255 (262)
T ss_dssp TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEE-EECTTCC--HHHHHTTTCSEEECTTCCHHHHHHHHHHH
T ss_pred cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEE-EECCcCC--HHHHHHcCCeEEECCchHHHHHHHHHHHH
Confidence 78999999998875 222 235666765432 235654 4443322 33467889998887666666665554443
No 129
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=87.80 E-value=1 Score=38.88 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=55.9
Q ss_pred HHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH-----HHHHHHHhhc
Q 026247 66 NLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG-----YDLLKRLKVS 138 (241)
Q Consensus 66 ~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G-----~el~~~lr~~ 138 (241)
+.|.+.||.|. +..|...|.++. +-.+++| +.+..|-..| .++++.++..
T Consensus 118 ~~L~k~Gf~Vlpy~~~D~~~ak~l~----------------------~~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~ 174 (268)
T 2htm_A 118 ERLIEEDFLVLPYMGPDLVLAKRLA----------------------ALGTATV-MPLAAPIGSGWGVRTRALLELFARE 174 (268)
T ss_dssp HHHHHTTCEECCEECSCHHHHHHHH----------------------HHTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT
T ss_pred HHHHHCCCEEeeccCCCHHHHHHHH----------------------hcCCCEE-EecCccCcCCcccCCHHHHHHHHHh
Confidence 33445799876 556775554443 2356766 7766654333 4567888742
Q ss_pred CCCC-CcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 139 SWKD-VPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 139 ~~~~-~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
. .+ +|||+=..-...++...+++.|+++.+.
T Consensus 175 ~-~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 175 K-ASLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp T-TTSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred c-CCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 2 46 9999877778899999999999999864
No 130
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=86.52 E-value=10 Score=32.58 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=65.5
Q ss_pred HHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC---CCCHHHHHHHHhh
Q 026247 62 KILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP---GMTGYDLLKRLKV 137 (241)
Q Consensus 62 ~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp---~~~G~el~~~lr~ 137 (241)
..+.......|..+ ..+++.+++...+ ...+|+|=+...-. ..| ++.+.+|..
T Consensus 159 ~~l~~~a~~lGl~~lvevh~~eEl~~A~----------------------~~ga~iIGinnr~l~t~~~d-l~~~~~L~~ 215 (272)
T 3tsm_A 159 KELEDTAFALGMDALIEVHDEAEMERAL----------------------KLSSRLLGVNNRNLRSFEVN-LAVSERLAK 215 (272)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHHHT----------------------TSCCSEEEEECBCTTTCCBC-THHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHH----------------------hcCCCEEEECCCCCccCCCC-hHHHHHHHH
Confidence 33444455689875 4689999987665 34577776653221 122 455555553
Q ss_pred cCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-----CCCChHHHHHHHHHHhc
Q 026247 138 SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-----KPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 138 ~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-----KP~~~~~L~~~i~~~l~ 187 (241)
.-..++|+|.-++-...+++.++.++|++++++ |+-++ ...++.++.
T Consensus 216 ~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~---~~~~~~l~~ 267 (272)
T 3tsm_A 216 MAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDV---AAATRALLT 267 (272)
T ss_dssp HSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCH---HHHHHHHHH
T ss_pred hCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCH---HHHHHHHHh
Confidence 332468899999988999999999999999976 34333 445555554
No 131
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=86.37 E-value=11 Score=31.61 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=59.0
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-------CCHHHHHHHHhhcCCCCCcEEEE
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-------MTGYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-------~~G~el~~~lr~~~~~~~pII~l 148 (241)
..+.+.+++.+.. ...+|.|.+.--.|. .-|++.+++++......+|||++
T Consensus 140 ~S~ht~~Ea~~A~----------------------~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAi 197 (243)
T 3o63_A 140 RSTHDPDQVAAAA----------------------AGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAI 197 (243)
T ss_dssp EEECSHHHHHHHH----------------------HSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEE
T ss_pred EeCCCHHHHHHHh----------------------hCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEe
Confidence 3578888887665 245899988654433 24788888887432247999999
Q ss_pred ecCCChHHHHHHHHcCCcceEe-----CCCChHHHHHHHHHHh
Q 026247 149 SSENVPSRVTMCLEEGAEEFLL-----KPVRLSDLEKLQPRLL 186 (241)
Q Consensus 149 sa~~~~~~~~~a~~~Ga~dyL~-----KP~~~~~L~~~i~~~l 186 (241)
.+- ..+.+..++.+|++++.. +.-++......+...+
T Consensus 198 GGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 198 GGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp SSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 776 677888999999998864 4444544444444443
No 132
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=84.94 E-value=2.6 Score=35.83 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=52.6
Q ss_pred cCCCccEEEEeCCCC--CCC--------------------HHHHHHHHhhcCCCCCcEEEEecCC------ChHHHHHHH
Q 026247 110 EESRVNLIMTDYCMP--GMT--------------------GYDLLKRLKVSSWKDVPVVVMSSEN------VPSRVTMCL 161 (241)
Q Consensus 110 ~~~~~DlVllD~~mp--~~~--------------------G~el~~~lr~~~~~~~pII~lsa~~------~~~~~~~a~ 161 (241)
.+.-.|+|.+++-.. ..| .+++++.+|.. .+++|+++|+-+. .......+.
T Consensus 41 ~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~-~~~~Pi~~m~y~n~v~~~g~~~f~~~~~ 119 (262)
T 2ekc_A 41 LKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE-FPDIPFLLMTYYNPIFRIGLEKFCRLSR 119 (262)
T ss_dssp HHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTSCEEEECCHHHHHHHCHHHHHHHHH
T ss_pred HHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-cCCCCEEEEecCcHHHHhhHHHHHHHHH
Confidence 445689999987542 233 34557777743 3479999985332 135567789
Q ss_pred HcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 162 EEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 162 ~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++|+++++.-.+..+++...+..+..
T Consensus 120 ~aG~dgvii~dl~~ee~~~~~~~~~~ 145 (262)
T 2ekc_A 120 EKGIDGFIVPDLPPEEAEELKAVMKK 145 (262)
T ss_dssp HTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 99999999987777777766665543
No 133
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=84.91 E-value=11 Score=28.99 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=71.9
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHhhcCcEEEE-EC--CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 47 ETFHVLAVDDSL-IDRKILENLLRVSSYQVTC-VD--SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 47 ~~~~VLIVDDd~-~~~~~l~~~L~~~g~~V~~-~~--~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
..++++|+.+.. .....+.++++..+ .|+. .+ +.++..+++ ...|++++-..
T Consensus 69 ~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~-----------------------~~ad~~l~ps~ 124 (200)
T 2bfw_A 69 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELY-----------------------GSVDFVIIPSY 124 (200)
T ss_dssp GGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHH-----------------------TTCSEEEECCS
T ss_pred CCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHH-----------------------HHCCEEEECCC
Confidence 467888887643 35566777777777 5555 44 445666666 24688887544
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
. +.-|..+++.+. ..+|||+. .. ....+.+ .|-.+++..|.+.+++...+.+++.
T Consensus 125 ~-e~~~~~~~Ea~a----~G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 125 F-EPFGLVALEAMC----LGAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp C-CSSCHHHHHHHH----TTCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred C-CCccHHHHHHHH----CCCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 3 344677777665 46787654 32 2333445 7888999999999999999999885
No 134
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=83.17 E-value=4.6 Score=33.39 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=47.8
Q ss_pred cCCCccEEEEeC--CCCCCCH--------------------HHHHHHHhhcCCCCCcEEEEecCCC------hHHHHHHH
Q 026247 110 EESRVNLIMTDY--CMPGMTG--------------------YDLLKRLKVSSWKDVPVVVMSSENV------PSRVTMCL 161 (241)
Q Consensus 110 ~~~~~DlVllD~--~mp~~~G--------------------~el~~~lr~~~~~~~pII~lsa~~~------~~~~~~a~ 161 (241)
.+. .|.|-+++ .-|.+|| +++++.+|.. .++||++++.... .+.+..++
T Consensus 29 ~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~--~~~pv~~~~~~~~~~~~~~~~~~~~~~ 105 (248)
T 1geq_A 29 DEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH--SSTPIVLMTYYNPIYRAGVRNFLAEAK 105 (248)
T ss_dssp GGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT--CCCCEEEEECHHHHHHHCHHHHHHHHH
T ss_pred HHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--CCCCEEEEeccchhhhcCHHHHHHHHH
Confidence 345 88888883 3345655 6778888743 3679888874222 46788899
Q ss_pred HcCCcceEeCCCChHHHHHHHH
Q 026247 162 EEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 162 ~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
++|++.++.-.....+....+.
T Consensus 106 ~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 106 ASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHTCCEEEETTCCGGGHHHHHH
T ss_pred HCCCCEEEECCCChhhHHHHHH
Confidence 9999999886555555444433
No 135
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=81.09 E-value=24 Score=30.30 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=51.8
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce-EeCCCChHHHHHHHHHH
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF-LLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy-L~KP~~~~~L~~~i~~~ 185 (241)
....+|.|++|+.-...+--.+...++.......++++=+...+...+..+++.|+++. ++|--+.+++..++..+
T Consensus 57 ~~~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 57 AGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp HTSCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred HhCCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 45679999999976655555555555533333556666566667888999999999876 44555778876665543
No 136
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=81.07 E-value=3.9 Score=34.76 Aligned_cols=77 Identities=12% Similarity=0.293 Sum_probs=52.6
Q ss_pred cCCCccEEEEeCCC--CCCCH--------------------HHHHHHHhhcCCCCCcEEEEecC------CChHHHHHHH
Q 026247 110 EESRVNLIMTDYCM--PGMTG--------------------YDLLKRLKVSSWKDVPVVVMSSE------NVPSRVTMCL 161 (241)
Q Consensus 110 ~~~~~DlVllD~~m--p~~~G--------------------~el~~~lr~~~~~~~pII~lsa~------~~~~~~~~a~ 161 (241)
.+...|+|-+|+-. |.+|| +++++.+|.. ..++||++|+-. +.......+.
T Consensus 41 ~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~-~~~~Pv~lm~y~n~v~~~g~~~~~~~~~ 119 (268)
T 1qop_A 41 IDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREK-HPTIPIGLLMYANLVFNNGIDAFYARCE 119 (268)
T ss_dssp HHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSSSCEEEEECHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEEEEEcccHHHHhhHHHHHHHHH
Confidence 45568999999844 33444 4567777743 247899887522 2256778899
Q ss_pred HcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 162 EEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 162 ~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
++|+++++.-....+++...+..+..
T Consensus 120 ~aGadgii~~d~~~e~~~~~~~~~~~ 145 (268)
T 1qop_A 120 QVGVDSVLVADVPVEESAPFRQAALR 145 (268)
T ss_dssp HHTCCEEEETTCCGGGCHHHHHHHHH
T ss_pred HcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 99999999987777776666555543
No 137
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=79.42 E-value=0.64 Score=39.96 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.5
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHhhcCcEEEEECC
Q 026247 48 TFHVLAVDDS--LIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 48 ~~~VLIVDDd--~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
+.+||||+++ +.....+.++|+..||+|+....
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~ 38 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPS 38 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECT
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecc
Confidence 4689999998 66778899999999999987653
No 138
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=79.32 E-value=10 Score=32.24 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=51.7
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCC-cEEEEecCCChHHHHHHHHcCCcce-EeCCCChHHHHHHHHHH
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDV-PVVVMSSENVPSRVTMCLEEGAEEF-LLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~-pII~lsa~~~~~~~~~a~~~Ga~dy-L~KP~~~~~L~~~i~~~ 185 (241)
....+|.|++|+.--..+.-.+...++....... ++|=+- ..+..++..+++.|+++. ++|--+.+++..++..+
T Consensus 34 ~~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn-~~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 34 AEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIP-QVDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECS-SCCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred hcCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeC-CCCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 3456999999999887777776666654222233 444444 455678999999999987 44555788877766555
No 139
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=79.12 E-value=8.9 Score=32.98 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=45.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
.|++++--.-.+.-|..+++.+- ..+|||+. .. ....+.+..|-.+|+..|.+.++|.+.+.+++..
T Consensus 283 adv~v~ps~~~e~~~~~~~Ea~a----~G~PvI~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMA----AGTAVVAS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHH----HTCEEEEC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred CCEEEecCCCCCCCchHHHHHHH----cCCCEEEe-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 46776642213334666766665 35787643 22 4455677788899999999999999999998853
No 140
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=78.64 E-value=4.1 Score=33.83 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=63.6
Q ss_pred HHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC----CC-CCHHHHHHHHh
Q 026247 64 LENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM----PG-MTGYDLLKRLK 136 (241)
Q Consensus 64 l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m----p~-~~G~el~~~lr 136 (241)
....|+..|+.+. .++++...+.++ ..-+||.|=+|-.+ .. .....+++.+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L---------------------~~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~ 202 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYL---------------------TRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVV 202 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHH---------------------HHSCCCEEEECHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHH---------------------HhCCCCEEEECHHHHhhhhcCchHHHHHHHHH
Confidence 3455677898765 477888888888 55679999999633 11 12233444443
Q ss_pred hc-CCCCCcEEEEecCCChHHHHHHHHcCCc---c-eEeCCCChHHHHHHHHH
Q 026247 137 VS-SWKDVPVVVMSSENVPSRVTMCLEEGAE---E-FLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 137 ~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~---d-yL~KP~~~~~L~~~i~~ 184 (241)
.. ..-++.+ +..+-.+.+....+.+.|++ | |+.||...+++...+..
T Consensus 203 ~~a~~~g~~v-iaeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 203 KLGQDLDLEV-VAEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHTTCEE-EECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHCCCeE-EEEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 21 1124444 46677788888889999987 3 37799999998876654
No 141
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=77.95 E-value=29 Score=29.95 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
...+.|-+.-.++.....+..+|....|.++.+++.++.++++.. ....+|++++... +
T Consensus 7 ~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~-------------------~~e~iDcLvle~~--~ 65 (289)
T 1r8j_A 7 LSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQT-------------------HRDQIDCLILVAA--N 65 (289)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHH-------------------STTSCSEEEEETT--S
T ss_pred ccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHh-------------------ccccCCEEEEEeC--C
Confidence 345678888899999999999998778999999999999999842 5678999999862 2
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecC
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~ 151 (241)
..-..+...+.+. ..-.|+|++...
T Consensus 66 ~~~~~~~~~L~~~-g~lLP~vil~~~ 90 (289)
T 1r8j_A 66 PSFRAVVQQLCFE-GVVVPAIVVGDR 90 (289)
T ss_dssp TTHHHHHHHHHHT-TCCCCEEEESCC
T ss_pred CccHHHHHHHHHc-CccccEEEeccC
Confidence 2356677788754 356899988654
No 142
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=77.60 E-value=2.6 Score=36.30 Aligned_cols=58 Identities=10% Similarity=0.292 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEEec------CCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSS------ENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa------~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+++++.+|.. ..++|||+|+- ++......+|.++|++++|.-....++.......+.
T Consensus 84 ~~~~v~~~r~~-~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~ 147 (271)
T 3nav_A 84 CFELIAQIRAR-NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAE 147 (271)
T ss_dssp HHHHHHHHHHH-CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 35677777743 36899999873 244567889999999999987676676555554443
No 143
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=77.44 E-value=40 Score=30.52 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=64.8
Q ss_pred cEEEEEeC----CHHHHHHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 49 FHVLAVDD----SLIDRKILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 49 ~~VLIVDD----d~~~~~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
..++++|- .......++.+-+.++..|. .+.+.++|..++ +.-.|.|.+-+.
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~----------------------~aGAD~I~vG~g 214 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELI----------------------ENGADGIKVGIG 214 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHH----------------------HTTCSEEEECC-
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHH----------------------HcCCCEEEEeCC
Confidence 46777752 33344555554444576655 578888887765 345788887321
Q ss_pred -----------CCCCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 123 -----------MPGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 123 -----------mp~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
-.+...+.++..+... ...++|||+--.-.+...+.+++.+||+....
T Consensus 215 ~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 215 PGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp --------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred CCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 0012345666666532 22479999887877899999999999997754
No 144
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=77.38 E-value=32 Score=29.05 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=51.1
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce-EeCCCChHHHHHHHHHH
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF-LLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy-L~KP~~~~~L~~~i~~~ 185 (241)
....+|.|++|+.-...+--++...++.......++++=+...+...+..+++.|+++. ++|--+.+++..++..+
T Consensus 36 ~~~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 36 ATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HTTCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 45679999999976655655555555533323455555555667888899999999875 45555778876665543
No 145
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=75.68 E-value=15 Score=29.60 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=48.5
Q ss_pred EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-------CCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 77 CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-------MTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 77 ~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-------~~G~el~~~lr~~~~~~~pII~ls 149 (241)
.+.+..++.+.. ....|.|+++-..+. ..|++.++.++... .+||++.-
T Consensus 116 sv~t~~~~~~a~----------------------~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~--~~pvia~G 171 (221)
T 1yad_A 116 SVHSLEEAVQAE----------------------KEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI--SIPVIAIG 171 (221)
T ss_dssp EECSHHHHHHHH----------------------HTTCSEEEEECCC----------CHHHHHHHHHHHC--CSCEEEES
T ss_pred EcCCHHHHHHHH----------------------hCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC--CCCEEEEC
Confidence 567888876654 234799998764332 23678888887432 68988776
Q ss_pred cCCChHHHHHHHHcCCcceEe
Q 026247 150 SENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 150 a~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+- +.+.+.+++++|++++..
T Consensus 172 GI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 172 GM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp SC-CGGGHHHHHHTTCSEEEE
T ss_pred CC-CHHHHHHHHHcCCCEEEE
Confidence 66 788999999999997643
No 146
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=74.94 E-value=40 Score=28.95 Aligned_cols=108 Identities=9% Similarity=0.052 Sum_probs=70.2
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHhhcCcEEEEEC--CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 47 ETFHVLAVDDSL-IDRKILENLLRVSSYQVTCVD--SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 47 ~~~~VLIVDDd~-~~~~~l~~~L~~~g~~V~~~~--~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
..++++|+.+.+ .....++++....|-.+...+ +.++..+++ ...|++++-...
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~~adv~v~ps~~ 340 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELY-----------------------GSVDFVIIPSYF 340 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHH-----------------------TTCSEEEECBSC
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHH-----------------------HHCCEEEeCCCC
Confidence 466777776543 344666677766773333344 556666666 235777765543
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+.-|..+++.+- ..+|||+. ..+ ...+.+..| .+++..|.+.+++.+.+.+++.
T Consensus 341 -e~~~~~~~EAma----~G~Pvi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 341 -EPFGLVALEAMC----LGAIPIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp -CSSCHHHHHHHH----TTCEEEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHH----CCCCeEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 445667777665 46788754 322 333445567 8999999999999999999986
No 147
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=74.18 E-value=15 Score=34.98 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=71.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAV----DDSLIDRKILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+||+. |-|.+=..++..+|+..||+|+..+ ..++.++.+ ....+|+|.+-
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa---------------------~~~~~diVgLS 156 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTA---------------------KEVNADLIGLS 156 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHH---------------------HHHTCSEEEEE
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH---------------------HHcCCCEEEEE
Confidence 4578888 7788888899999999999998654 566667766 45689999999
Q ss_pred CCCCC-CC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc-----CCcceEeCCCChHHHHHHHHHHh
Q 026247 121 YCMPG-MT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE-----GAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 121 ~~mp~-~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~-----Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
..|.. +. --++++.|+.. ..++||++--......... .+. |++.|-.. ..+......+++
T Consensus 157 ~l~t~~~~~m~~~i~~Lr~~-g~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~D---A~~Av~~a~~l~ 223 (579)
T 3bul_A 157 GLITPSLDEMVNVAKEMERQ-GFTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQN---ASRTVGVVAALL 223 (579)
T ss_dssp CCSTHHHHHHHHHHHHHHHT-TCCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECCS---HHHHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHHHHHc-CCCCeEEEEccccchhhhh--hhhhhcccCCeEEECC---HHHHHHHHHHHh
Confidence 87753 11 22466677653 3578886554434443321 123 88777543 333344444444
No 148
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=71.82 E-value=3 Score=35.80 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCC------ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSEN------VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~------~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+++++.+|.. ..++||++|+-+. ......+|.++|+++.|.-....++....+..+-
T Consensus 83 ~~~v~~ir~~-~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~ 145 (267)
T 3vnd_A 83 FDIITKVRAQ-HPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAK 145 (267)
T ss_dssp HHHHHHHHHH-CTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHH
Confidence 5666677643 2578999986432 2567888999999999988777777666555554
No 149
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=71.38 E-value=19 Score=29.88 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=61.3
Q ss_pred hhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEE
Q 026247 69 RVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVV 147 (241)
Q Consensus 69 ~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~ 147 (241)
...+. -|....+.++++...+.+ ...-+++|=+.++-| ++++.++.|+.. .++ .+|-
T Consensus 11 ~~~~vi~Vir~~~~~~a~~~a~al------------------~~gGi~~iEvt~~t~--~a~~~I~~l~~~-~p~-~~IG 68 (217)
T 3lab_A 11 NTKPLIPVIVIDDLVHAIPMAKAL------------------VAGGVHLLEVTLRTE--AGLAAISAIKKA-VPE-AIVG 68 (217)
T ss_dssp TSCSEEEEECCSCGGGHHHHHHHH------------------HHTTCCEEEEETTST--THHHHHHHHHHH-CTT-SEEE
T ss_pred hhCCEEEEEEcCCHHHHHHHHHHH------------------HHcCCCEEEEeCCCc--cHHHHHHHHHHH-CCC-CeEe
Confidence 33443 234456666666655333 345567766666554 699999999854 355 4555
Q ss_pred EecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHH
Q 026247 148 MSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 148 lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~ 184 (241)
.-.--+.+....+.++|++ |+.-|....++.+...+
T Consensus 69 AGTVlt~~~a~~ai~AGA~-fivsP~~~~evi~~~~~ 104 (217)
T 3lab_A 69 AGTVCTADDFQKAIDAGAQ-FIVSPGLTPELIEKAKQ 104 (217)
T ss_dssp EECCCSHHHHHHHHHHTCS-EEEESSCCHHHHHHHHH
T ss_pred eccccCHHHHHHHHHcCCC-EEEeCCCcHHHHHHHHH
Confidence 5556679999999999996 77777776776655444
No 150
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=71.19 E-value=12 Score=29.98 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=52.0
Q ss_pred HHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-CCCHHHHHHHHhhcCCC-C
Q 026247 66 NLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-GMTGYDLLKRLKVSSWK-D 142 (241)
Q Consensus 66 ~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~~~G~el~~~lr~~~~~-~ 142 (241)
+..+..|..+ ..+.+..++.... ....|.|++ .| +..|++.+++++.. .+ +
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~----------------------~~G~d~v~v---~~t~~~g~~~~~~l~~~-~~~~ 148 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTAL----------------------EAGAQALKI---FPSSAFGPQYIKALKAV-LPSD 148 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHH----------------------HTTCSEEEE---TTHHHHCHHHHHHHHTT-SCTT
T ss_pred HHHHHcCCCEEeecCCHHHHHHHH----------------------HCCCCEEEE---ecCCCCCHHHHHHHHHh-ccCC
Confidence 3444566543 2367888876654 235788876 22 12367888888743 23 5
Q ss_pred CcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 143 VPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 143 ~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+||++..+-. .+.+.+++++|++++..
T Consensus 149 ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 149 IAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp CEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred CeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 8998877665 78888899999998864
No 151
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=70.53 E-value=16 Score=31.99 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=36.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCC-hHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENV-PSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~-~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
-|++++--..-+.-|..+++.+- ..+|||+-+.... .+........ +++..+-+.++|.+.+.+++..
T Consensus 278 aDv~vl~ss~~e~gg~~~lEAmA----~G~PVI~~~~~~~~~e~~~~~~~~---G~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 278 GKIAIVGGTFVNIGGHNLLEPTC----WGIPVIYGPYTHKVNDLKEFLEKE---GAGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp EEEEEECSSSSSSCCCCCHHHHT----TTCCEEECSCCTTSHHHHHHHHHT---TCEEECCSHHHHHHHHHHHHHS
T ss_pred CCEEEECCcccCCCCcCHHHHHH----hCCCEEECCCccChHHHHHHHHHC---CCEEEeCCHHHHHHHHHHHHhH
Confidence 56755522121122333444433 5789874222222 3333222233 4666677899999999999863
No 152
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=70.49 E-value=17 Score=28.93 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=37.1
Q ss_pred CccEEEEeCCCC----CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIMTDYCMP----GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVllD~~mp----~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..|.|.++.... +..+++.+++++.. .+++||++-.+- ..+...+++++|++.++.
T Consensus 127 g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~-~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 127 GADMLAVHTGTDQQAAGRKPIDDLITMLKV-RRKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp TCCEEEEECCHHHHHTTCCSHHHHHHHHHH-CSSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred CCCEEEEcCCCcccccCCCCHHHHHHHHHH-cCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 467777762210 11357788888853 246888765554 478888999999998754
No 153
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=70.16 E-value=8 Score=33.09 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=48.3
Q ss_pred cCCCccEEEEeCCCC--CCCH--------------------HHHHHHHhhcCCCCCcEEEEecC------CChHHHHHHH
Q 026247 110 EESRVNLIMTDYCMP--GMTG--------------------YDLLKRLKVSSWKDVPVVVMSSE------NVPSRVTMCL 161 (241)
Q Consensus 110 ~~~~~DlVllD~~mp--~~~G--------------------~el~~~lr~~~~~~~pII~lsa~------~~~~~~~~a~ 161 (241)
.+. .|+|.+++-.. -.|| +++++.+|.. .++|||+|+-+ +.......|.
T Consensus 40 ~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~--~~~Pii~m~y~n~v~~~g~~~f~~~~~ 116 (271)
T 1ujp_A 40 LPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL--TEKPLFLMTYLNPVLAWGPERFFGLFK 116 (271)
T ss_dssp GGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CCSCEEEECCHHHHHHHCHHHHHHHHH
T ss_pred Hhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCEEEEecCcHHHHhhHHHHHHHHH
Confidence 455 99999987542 2232 4667778754 57999998422 2245567789
Q ss_pred HcCCcceEeCCCChHHHHHHHHHH
Q 026247 162 EEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 162 ~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
++|++++|.=....+++...+..+
T Consensus 117 ~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 117 QAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HcCCCEEEecCCCHHHHHHHHHHH
Confidence 999999998766666665555444
No 154
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=69.98 E-value=19 Score=28.62 Aligned_cols=55 Identities=18% Similarity=0.360 Sum_probs=40.2
Q ss_pred CccEEEEeCCCCC-------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIMTDYCMPG-------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVllD~~mp~-------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.+|.|+++-..|. ..+++.+++++... .+||++..+-. .+.+.++++.|++++..
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV--KIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC--SSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC--CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 4899998764443 34788888887432 68988766555 77888889999998743
No 155
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=68.77 E-value=27 Score=25.80 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=32.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
...|+|++-+.-+. .-..++..+|.. .+.++||+.+.. .+......+.|++..+.
T Consensus 70 ~~ad~vi~~~~~~~-~n~~~~~~a~~~-~~~~~iiar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 70 ECAKWLILTIPNGY-EAGEIVASARAK-NPDIEIIARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp GGCSEEEECCSCHH-HHHHHHHHHHHH-CSSSEEEEEESS--HHHHHHHHHTTCSEEEE
T ss_pred ccCCEEEEECCChH-HHHHHHHHHHHH-CCCCeEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 35788887643222 122344455532 366777766543 56666778899986553
No 156
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=67.35 E-value=46 Score=27.78 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=62.2
Q ss_pred HHHHHhhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCC
Q 026247 64 LENLLRVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKD 142 (241)
Q Consensus 64 l~~~L~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~ 142 (241)
+.+.|...+. -|....+.++++++.+.+ ...-..+|=+.++ ..++.+.++.++... ++
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al------------------~~gGi~~iEvt~~--t~~a~e~I~~l~~~~-~~ 85 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVL------------------AENGLPAAEITFR--SDAAVEAIRLLRQAQ-PE 85 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHH------------------HHTTCCEEEEETT--STTHHHHHHHHHHHC-TT
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHH------------------HHCCCCEEEEeCC--CCCHHHHHHHHHHhC-CC
Confidence 3444555664 344566777777766433 3445666665555 446899999998543 44
Q ss_pred CcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHH
Q 026247 143 VPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 143 ~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~ 184 (241)
.+|-.-.--+.+....+.++||+ |+.-|....++....++
T Consensus 86 -~~iGaGTVlt~~~a~~Ai~AGA~-fIvsP~~~~~vi~~~~~ 125 (232)
T 4e38_A 86 -MLIGAGTILNGEQALAAKEAGAT-FVVSPGFNPNTVRACQE 125 (232)
T ss_dssp -CEEEEECCCSHHHHHHHHHHTCS-EEECSSCCHHHHHHHHH
T ss_pred -CEEeECCcCCHHHHHHHHHcCCC-EEEeCCCCHHHHHHHHH
Confidence 34444445568899999999995 77777766666655444
No 157
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=65.41 E-value=64 Score=27.48 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-CC--CCCHHHHHHHHh
Q 026247 61 RKILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC-MP--GMTGYDLLKRLK 136 (241)
Q Consensus 61 ~~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~-mp--~~~G~el~~~lr 136 (241)
...+.++-.+.|.++ +.+.+.+|....+. ...++|=++-+ +. ..| ++...+|.
T Consensus 142 l~~l~~~A~~lGl~~LvEVh~~~El~rAl~----------------------~~a~iIGINNRnL~tf~vd-l~~t~~L~ 198 (258)
T 4a29_A 142 LESLLEYARSYGMEPLILINDENDLDIALR----------------------IGARFIGIMSRDFETGEIN-KENQRKLI 198 (258)
T ss_dssp HHHHHHHHHHTTCCCEEEESSHHHHHHHHH----------------------TTCSEEEECSBCTTTCCBC-HHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhcchHHHHHHHhc----------------------CCCcEEEEeCCCccccccC-HHHHHHHH
Confidence 334555556789875 56999999877762 24566644322 22 223 45556665
Q ss_pred hcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 137 VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 137 ~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
..-..++.+|.=|+-...+++.+....|+++||+-
T Consensus 199 ~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 199 SMIPSNVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp TTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred hhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 33334566677788889999999999999999985
No 158
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=64.78 E-value=43 Score=25.34 Aligned_cols=66 Identities=11% Similarity=0.208 Sum_probs=46.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
.|++++-.. .+.-|..+++.+. ..+|||+. .. ....+.+..|..+++. +.+.+++.+.+.+++...
T Consensus 98 adi~v~ps~-~e~~~~~~~Eama----~G~PvI~~-~~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 98 CKGLLCTAK-DEDFGLTPIEAMA----SGKPVIAV-NE---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp CSEEEECCS-SCCSCHHHHHHHH----TTCCEEEE-SS---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred CCEEEeCCC-cCCCChHHHHHHH----cCCcEEEe-CC---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 577776332 3344667777665 46788754 22 3445556678889999 999999999999998644
No 159
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=64.26 E-value=23 Score=29.91 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=44.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC-CCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK-PVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K-P~~~~~L~~~i~~~l~ 187 (241)
.|++++-.. .+.-|..+++.+- ..+|+|+....+.. +.+..|..+++.. |.+.++|.+.+.+++.
T Consensus 271 ad~~v~ps~-~e~~~~~~~Ea~a----~G~Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 271 ADLLLHPAY-QEAAGIVLLEAIT----AGLPVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHH----HTCCEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred cCEEEeccc-cCCcccHHHHHHH----CCCCEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 467776433 2444667777665 36788765433333 3345677889987 8999999999999985
No 160
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.29 E-value=22 Score=25.82 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=28.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHh
Q 026247 51 VLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLG 89 (241)
Q Consensus 51 VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~ 89 (241)
.|+-|.++...+.+..-+++.||+|.-+.+.++|+..++
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivr 118 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVR 118 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHH
Confidence 344455666666667777778888888888888888773
No 161
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=62.43 E-value=39 Score=29.28 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=44.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++-.. .+.-|..+++.+- ..+|||+.. .. ...+.+..|..+++..|.+.++|.+.+.+++.
T Consensus 326 adv~v~ps~-~e~~~~~~~Eama----~G~PvI~~~-~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 326 ADIVAVPSF-NESFGLVAMEAQA----SGTPVIAAR-VG---GLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHH----TTCCEEEES-CT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEECcc-ccCCchHHHHHHH----cCCCEEecC-CC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 467666432 2344666766665 467887543 22 23345667888999999999999999999885
No 162
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=62.38 E-value=7.3 Score=33.54 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=48.0
Q ss_pred CccEEEEEeC-----CHHHHHHHHHHHhhcC-cEEEEECCHHHH--HHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 47 ETFHVLAVDD-----SLIDRKILENLLRVSS-YQVTCVDSGDKA--LEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 47 ~~~~VLIVDD-----d~~~~~~l~~~L~~~g-~~V~~~~~~~ea--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
..++||||.. -+.....|..+|++.| |+|++..+.... .+.+. ..-..||+||
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~-------------------~~L~~~D~vV 63 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV-------------------LDFSPYQLVV 63 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC-------------------CCCTTCSEEE
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh-------------------hhhhcCCEEE
Confidence 4579999975 2556678999999888 999987653100 00110 0124699999
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcEEEE
Q 026247 119 TDYCMPGMTGYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 119 lD~~mp~~~G~el~~~lr~~~~~~~pII~l 148 (241)
++..+...+... .+.|..--.....+|++
T Consensus 64 ~~~~~~~l~~~~-~~~l~~yV~~Ggglv~~ 92 (281)
T 4e5v_A 64 LDYNGDSWPEET-NRRFLEYVQNGGGVVIY 92 (281)
T ss_dssp ECCCSSCCCHHH-HHHHHHHHHTTCEEEEE
T ss_pred EeCCCCcCCHHH-HHHHHHHHHcCCCEEEE
Confidence 988655444322 22222111124677777
No 163
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=62.28 E-value=74 Score=28.28 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=63.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHhhc-CcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVD----DSLIDRKILENLLRVS-SYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVD----Dd~~~~~~l~~~L~~~-g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+..++++| +.+.....++.+-+.. +..|. .+.+.++|..+. +.-.|.|.+-
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~----------------------~aGAD~I~vG 177 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALI----------------------EAGVSAVKVG 177 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHH----------------------HHTCSEEEEC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHH----------------------HcCCCEEEEe
Confidence 45677776 3344444455554444 55543 478888888775 2357888873
Q ss_pred CCCCC------------CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 121 YCMPG------------MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 121 ~~mp~------------~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+. |+ ...++++..+... ...++|||+--.-.+...+.+++.+||+....
T Consensus 178 ~g-pGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 178 IG-PGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp SS-CSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cC-CCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 21 22 2345555555421 12468998887777889999999999987754
No 164
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=62.18 E-value=46 Score=25.59 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=48.8
Q ss_pred ccCCccEEEEEeCCHHH--HHHHHHHHhhcCcEEEE--E--C-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccE
Q 026247 44 QQQETFHVLAVDDSLID--RKILENLLRVSSYQVTC--V--D-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNL 116 (241)
Q Consensus 44 ~~~~~~~VLIVDDd~~~--~~~l~~~L~~~g~~V~~--~--~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 116 (241)
.+....|||++-|.-.. ...+.+.|... ..|.. . . +....++.+... .....||+
T Consensus 16 ~~~~~prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~pd~ 77 (200)
T 4h08_A 16 NKTDLPHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVV-----------------LKNTKFDV 77 (200)
T ss_dssp TCCSSCEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHH-----------------HHHSCCSE
T ss_pred ccCCCCeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHH-----------------HhcCCCCe
Confidence 34445589999998654 23456666533 33432 1 1 222333333110 03467999
Q ss_pred EEEeCCCCCCCH---------HHHHHHHhhcCCCCCcEEEEecC
Q 026247 117 IMTDYCMPGMTG---------YDLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 117 VllD~~mp~~~G---------~el~~~lr~~~~~~~pII~lsa~ 151 (241)
|++.+..-+... -.+++.+|. ..+..+||+++..
T Consensus 78 Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~-~~p~~~ii~~~~~ 120 (200)
T 4h08_A 78 IHFNNGLHGFDYTEEEYDKSFPKLIKIIRK-YAPKAKLIWANTT 120 (200)
T ss_dssp EEECCCSSCTTSCHHHHHHHHHHHHHHHHH-HCTTCEEEEECCC
T ss_pred EEEEeeeCCCCCCHHHHHHHHHHHHHHHhh-hCCCccEEEeccC
Confidence 999776665321 235556664 3477888887653
No 165
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=61.56 E-value=74 Score=26.90 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=37.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
-|++++.- .|+ +++.+- ..+|+|+.......... .+.| .+++.. .+.++|.+.+.+++..
T Consensus 275 ad~~v~~S-----~g~-~lEA~a----~G~PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~d 334 (376)
T 1v4v_A 275 SLLLVTDS-----GGL-QEEGAA----LGVPVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLEN 334 (376)
T ss_dssp EEEEEESC-----HHH-HHHHHH----TTCCEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHTC
T ss_pred CcEEEECC-----cCH-HHHHHH----cCCCEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHhC
Confidence 57777642 344 445443 57899875433333332 3455 467774 4899999999999853
No 166
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=60.96 E-value=24 Score=32.06 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=20.0
Q ss_pred CCccEEEEeCCCCCCCHH--HHHHHH---hhcCCCCCcEEEEecC
Q 026247 112 SRVNLIMTDYCMPGMTGY--DLLKRL---KVSSWKDVPVVVMSSE 151 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~--el~~~l---r~~~~~~~pII~lsa~ 151 (241)
..||+||+|. |+..+. .+...+ .....++..++++.+.
T Consensus 182 ~~~D~VIIDT--pG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 182 KFYDVLLVDT--AGRLHVDEAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp TTCSEEEEEC--CCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred CCCCEEEEEC--CCcccccHHHHHHHHHHHHhhcCcceeEEeecc
Confidence 5799999998 553322 233332 2223355555555444
No 167
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=60.82 E-value=24 Score=29.91 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=43.7
Q ss_pred ccEEEEeCCC------CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCM------PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~m------p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++-... ++.-|..+++.+- ..+|||+ |..... .+.+..| .+++..|.+.++|.+.+.+++.
T Consensus 273 ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a----~G~PvI~-~~~~~~---~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 273 ADIFAMPARTRGGGLDVEGLGIVYLEAQA----CGVPVIA-GTSGGA---PETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp CSEEEECCCCBGGGTBCCSSCHHHHHHHH----TTCCEEE-CSSTTG---GGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred CCEEEecCccccccccccccCcHHHHHHH----cCCCEEE-eCCCCh---HHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 5677764433 1444666766665 4678876 333322 2234567 8999999999999999999985
No 168
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=60.53 E-value=72 Score=27.55 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=55.8
Q ss_pred HHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-C----CCHHHHHHHHhhcC
Q 026247 66 NLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-G----MTGYDLLKRLKVSS 139 (241)
Q Consensus 66 ~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~----~~G~el~~~lr~~~ 139 (241)
+.++..|..+. .+.+.+++.... ....|.|+++-.-. + ...++++..++..
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~----------------------~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~- 174 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVE----------------------RAGADAVIAEGMESGGHIGEVTTFVLVNKVSRS- 174 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHH----------------------HTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH-
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHH----------------------HcCCCEEEEECCCCCccCCCccHHHHHHHHHHH-
Confidence 44455676554 467888876654 23478888864222 2 2457888888743
Q ss_pred CCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 140 WKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 140 ~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.++|||+-.+-.+.+.+.+++..|++++..
T Consensus 175 -~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 175 -VNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp -CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -cCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 368998888877799999999999998753
No 169
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=60.30 E-value=41 Score=27.70 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++++++++.. ..+|||+..+-...+.+.++++.|+++++.=
T Consensus 189 ~~~i~~l~~~--~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 189 TEMIRFVRPL--TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHGGG--CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHH--cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 7888888853 4789999988888899999999999987653
No 170
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=59.77 E-value=29 Score=29.71 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=33.6
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHhhcCcEEEEEC---CHHH----HHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 48 TFHVLAVDDSL---IDRKILENLLRVSSYQVTCVD---SGDK----ALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 48 ~~~VLIVDDd~---~~~~~l~~~L~~~g~~V~~~~---~~~e----al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
+.+|+++|-|. .....+..+....|+.+.... +..+ +++.+ ....||+|
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~---------------------~~~~~D~V 184 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF---------------------LSEKMEII 184 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH---------------------HHTTCSEE
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH---------------------HhCCCCEE
Confidence 45899999873 333344444455666665432 3332 33333 23579999
Q ss_pred EEeCCCCCCCH
Q 026247 118 MTDYCMPGMTG 128 (241)
Q Consensus 118 llD~~mp~~~G 128 (241)
|+|. |+..+
T Consensus 185 iIDT--pg~~~ 193 (297)
T 1j8m_F 185 IVDT--AGRHG 193 (297)
T ss_dssp EEEC--CCSCC
T ss_pred EEeC--CCCcc
Confidence 9998 55444
No 171
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=59.60 E-value=21 Score=28.86 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=45.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE---EEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ---VTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~---V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
..+|.-||-++......++.++..|+. +.. .+++.+.+..+ ....||+|++|...
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~---------------------~~~~fD~V~~d~~~ 139 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL---------------------ANDSYQLVFGQVSP 139 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS---------------------CTTCEEEEEECCCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh---------------------cCCCcCeEEEcCcH
Confidence 468999999999999999999887764 554 55666554332 24679999999754
Q ss_pred CCCCHHHHHHHHh
Q 026247 124 PGMTGYDLLKRLK 136 (241)
Q Consensus 124 p~~~G~el~~~lr 136 (241)
+. -..+++.+.
T Consensus 140 ~~--~~~~l~~~~ 150 (221)
T 3dr5_A 140 MD--LKALVDAAW 150 (221)
T ss_dssp TT--HHHHHHHHH
T ss_pred HH--HHHHHHHHH
Confidence 33 333454443
No 172
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=59.59 E-value=52 Score=29.09 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=66.6
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHhhcCcEEE-EEC-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSL-IDRKILENLLRVSSYQVT-CVD-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~-~~~~~l~~~L~~~g~~V~-~~~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+++|+-+.+ ..+..++++....+-.|. ..+ +.++..+++. ..|++++--. .
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~-----------------------~adv~v~pS~-~ 375 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQA-----------------------GCDAIIIPSR-F 375 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHH-----------------------HCSEEEECCS-C
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHh-----------------------cCCEEEECcc-c
Confidence 56777776543 345666666665554443 333 3333334442 3577776443 2
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC---------CcceEeCCCChHHHHHHHHHHh
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG---------AEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G---------a~dyL~KP~~~~~L~~~i~~~l 186 (241)
+.-|+.+++.+. ..+|||+. .. .-..+.+..| .++|+..|.+.++|.+.+.+++
T Consensus 376 E~~~~~~lEAma----~G~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 376 EPCGLTQLYALR----YGCIPVVA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp CSSCSHHHHHHH----HTCEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH----CCCCEEEe-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 444666777665 36788764 32 3344556677 8899999999999999999987
No 173
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=58.69 E-value=75 Score=28.08 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=61.4
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 49 FHVLAVD----DSLIDRKILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 49 ~~VLIVD----Dd~~~~~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
..++++| +.......++.+-+..+..|. .+.+.++|..++ +.-.|.|.+-+.
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~----------------------~aGaD~I~VG~~ 175 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELI----------------------ENGADGIKVGIG 175 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHH----------------------HTTCSEEEECSS
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHH----------------------HcCcCEEEEecC
Confidence 4566664 333444555555554566554 578888887765 345788887321
Q ss_pred C-----------CCCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 123 M-----------PGMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 123 m-----------p~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
- .+...++++..+... ....+|||+--.-.+...+.+++.+||+....
T Consensus 176 ~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 176 PGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp CCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 0 012335555555321 11368998877777889999999999997753
No 174
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=58.68 E-value=57 Score=29.03 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=64.2
Q ss_pred HHHHHHHHhhcCc--EEEEECC--HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHh
Q 026247 61 RKILENLLRVSSY--QVTCVDS--GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 61 ~~~l~~~L~~~g~--~V~~~~~--~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr 136 (241)
...+.++.+..|. .|...+. .++..+++.. .....|++++-.. .+.-|..+++.+-
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~-------------------a~~~~dv~v~pS~-~Eg~~~~~lEAma 380 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY-------------------LASKGSVFALTSF-YEPFGLAPVEAMA 380 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH-------------------HHHTTCEEEECCS-CBCCCSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh-------------------cCcCCCEEEECcc-cCCCCcHHHHHHH
Confidence 6667777777664 3555443 5677676621 0001278776433 2344666777665
Q ss_pred hcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 137 VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 137 ~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..+|||+.. . ....+.+..|.++++..|.+.++|.+.+.+++.
T Consensus 381 ----~G~PvI~s~-~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 381 ----SGLPAVVTR-N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp ----TTCCEEEES-S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred ----cCCCEEEec-C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 468887543 2 234456677888999999999999999999885
No 175
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=58.52 E-value=43 Score=27.14 Aligned_cols=76 Identities=16% Similarity=0.065 Sum_probs=52.9
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHhhcCcEEEEE----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 48 TFHVLAVD------DSLIDRKILENLLRVSSYQVTCV----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 48 ~~~VLIVD------Dd~~~~~~l~~~L~~~g~~V~~~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
..+|++|+ |.......+.+.|+..|+++... .+.++..+.+. ..|.|
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-----------------------~ad~I 83 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-----------------------KNDFI 83 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-----------------------HSSEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-----------------------hCCEE
Confidence 46899996 33446677889999999999887 47777777662 26888
Q ss_pred EEeCCCCCCCHHHHHHHHhhcC---------CCCCcEEEEec
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSS---------WKDVPVVVMSS 150 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~---------~~~~pII~lsa 150 (241)
++ ||.+-+.+.+.|+... ....|++-+|+
T Consensus 84 ~l----~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 84 YV----TGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp EE----CCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred EE----CCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 86 7888777777766421 13567766653
No 176
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=58.52 E-value=79 Score=26.28 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=49.1
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce-EeCCCChHHHHHHHHH
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF-LLKPVRLSDLEKLQPR 184 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy-L~KP~~~~~L~~~i~~ 184 (241)
....+|.|++|+.-...+--++...++.......++++=+...+...+..+++.|+++. ++|--+.+++..++..
T Consensus 37 ~~~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 37 GLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp TTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHHHHHHHHH
Confidence 45679999999976544433443334432223456665566667778899999999886 5555678887655443
No 177
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=58.44 E-value=88 Score=26.79 Aligned_cols=81 Identities=17% Similarity=0.125 Sum_probs=55.0
Q ss_pred HHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-------CCHHHHHHHHhh
Q 026247 66 NLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-------MTGYDLLKRLKV 137 (241)
Q Consensus 66 ~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-------~~G~el~~~lr~ 137 (241)
+.++..|..+. .+.+.+++.... ....|.|+++-.-++ ...+++++.++.
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~----------------------~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~ 169 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAE----------------------RLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAAN 169 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHH----------------------HTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHT
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHH----------------------HcCCCEEEEECCCCCcCCCCccccHHHHHHHHHH
Confidence 34455565544 467777776654 345788888532221 246778888874
Q ss_pred cCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 138 SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 138 ~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
. .++|||+-.+-.+.+.+.+++..|+++...
T Consensus 170 ~--~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 170 R--LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp T--CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred h--cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 2 378998887777788999999999997754
No 178
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=58.15 E-value=83 Score=26.39 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=40.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
..|++++.- |.-+++.+- ..+|+|+...... ..+..+.| .+++..+ +.++|.+.+.+++..
T Consensus 282 ~ad~~v~~s------g~~~lEA~a----~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 282 RSYLMLTDS------GGVQEEAPS----LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp TCSEEEECC------HHHHHHHHH----HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred hCcEEEECC------CChHHHHHh----cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 357777653 444555554 3679876522122 23346778 8899877 999999999998853
No 179
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=58.07 E-value=43 Score=25.79 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=35.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHh--hcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLR--VSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~--~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
+.+|++||-|+.. .+..++. ..++.+..+.. ....+.+.. ....||+||+|. |.
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~-------------------l~~~yD~viiD~--~~ 85 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRK-------------------DLADYDFAIVDG--AG 85 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHH-------------------HTTTSSEEEEEC--CS
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHH-------------------hcCCCCEEEEEC--CC
Confidence 5689999987542 2334443 23456665554 223333321 234699999997 33
Q ss_pred CCHHHHHHHHh
Q 026247 126 MTGYDLLKRLK 136 (241)
Q Consensus 126 ~~G~el~~~lr 136 (241)
..+......+.
T Consensus 86 ~~~~~~~~~l~ 96 (206)
T 4dzz_A 86 SLSVITSAAVM 96 (206)
T ss_dssp SSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 33444444444
No 180
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=57.97 E-value=18 Score=30.16 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=47.1
Q ss_pred cCCCccEEEEeCCCC--CCC--------------------HHHHHHHHhhcCCCCCcEEEEecCCChH---HHHHHHHcC
Q 026247 110 EESRVNLIMTDYCMP--GMT--------------------GYDLLKRLKVSSWKDVPVVVMSSENVPS---RVTMCLEEG 164 (241)
Q Consensus 110 ~~~~~DlVllD~~mp--~~~--------------------G~el~~~lr~~~~~~~pII~lsa~~~~~---~~~~a~~~G 164 (241)
.+...|+|-++.-.. -+| ++++++.+|.. .++|+++++-. +.. ....+.++|
T Consensus 42 ~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~--~~~Pv~~m~~~-~~~~~~~~~~a~~aG 118 (262)
T 1rd5_A 42 DGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPE--LSCPVVLLSYY-KPIMFRSLAKMKEAG 118 (262)
T ss_dssp HHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGG--CSSCEEEECCS-HHHHSCCTHHHHHTT
T ss_pred HHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCEEEEecC-cHHHHHHHHHHHHcC
Confidence 345689999987543 233 45677888753 57898887522 211 223489999
Q ss_pred CcceEeCCCChHHHHHHHHHHh
Q 026247 165 AEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 165 a~dyL~KP~~~~~L~~~i~~~l 186 (241)
+++++.-....+++...+..+.
T Consensus 119 adgv~v~d~~~~~~~~~~~~~~ 140 (262)
T 1rd5_A 119 VHGLIVPDLPYVAAHSLWSEAK 140 (262)
T ss_dssp CCEEECTTCBTTTHHHHHHHHH
T ss_pred CCEEEEcCCChhhHHHHHHHHH
Confidence 9999886555555555555443
No 181
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=57.73 E-value=54 Score=24.10 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=68.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECC--HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDS--GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~--~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++++|+.+.+. ...+.++....|..+.. +. .++..+++ ...|++++-.. .
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~-----------------------~~adv~v~ps~-~ 84 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEIL-----------------------KTCTLYVHAAN-V 84 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHH-----------------------TTCSEEEECCC-S
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHH-----------------------HhCCEEEECCc-c
Confidence 4678888887544 46677777777776665 43 46666666 24678887543 3
Q ss_pred CCCHHHHHHHHhhcCCCCC-cEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 125 GMTGYDLLKRLKVSSWKDV-PVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~-pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+.-|..+++.+- ..+ |||..+........ ...| +++..|.+.+++...+.+++.
T Consensus 85 e~~~~~~~Eama----~G~vPvi~~~~~~~~~~~---~~~~--~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 85 ESEAIACLEAIS----VGIVPVIANSPLSATRQF---ALDE--RSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp CCCCHHHHHHHH----TTCCEEEECCTTCGGGGG---CSSG--GGEECTTCHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHh----cCCCcEEeeCCCCchhhh---ccCC--ceEEcCCCHHHHHHHHHHHHh
Confidence 445677777665 465 88873332222221 1222 347889999999999999885
No 182
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=57.14 E-value=77 Score=25.71 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=52.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|..||-++......+..+...|+. |. ...++.+.+..+. ....||+|++|...+
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~--------------------~~~~fD~V~~d~~~~ 147 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG--------------------ECPAFDLIFIDADKP 147 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC--------------------SCCCCSEEEECSCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC--------------------CCCCeEEEEECCchH
Confidence 568999999999999999999877753 44 4677776655430 234799999997432
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEec
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa 150 (241)
+-..+++.+...-.+.- +|++..
T Consensus 148 --~~~~~l~~~~~~LkpGG-~lv~~~ 170 (248)
T 3tfw_A 148 --NNPHYLRWALRYSRPGT-LIIGDN 170 (248)
T ss_dssp --GHHHHHHHHHHTCCTTC-EEEEEC
T ss_pred --HHHHHHHHHHHhcCCCe-EEEEeC
Confidence 23345555543322343 444543
No 183
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=56.66 E-value=17 Score=30.67 Aligned_cols=65 Identities=6% Similarity=-0.061 Sum_probs=43.6
Q ss_pred ccEEEEeCC---------CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc--CCcceEeCCCChHHHHHHH
Q 026247 114 VNLIMTDYC---------MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE--GAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 114 ~DlVllD~~---------mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~--Ga~dyL~KP~~~~~L~~~i 182 (241)
.|++++-.. ..+.-|..+++.+. ..+|||+.- . ....+.+.. |-.+|+..| +.++|.+.+
T Consensus 232 adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma----~G~PvI~s~-~---~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i 302 (342)
T 2iuy_A 232 AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV----SGTPVVGTG-N---GCLAEIVPSVGEVVGYGTDF-APDEARRTL 302 (342)
T ss_dssp CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH----TTCCEEECC-T---TTHHHHGGGGEEECCSSSCC-CHHHHHHHH
T ss_pred CCEEEECCcccccccccccccCccHHHHHHHh----cCCCEEEcC-C---CChHHHhcccCCCceEEcCC-CHHHHHHHH
Confidence 467666433 13444666777665 467887543 2 224455667 888999999 999999998
Q ss_pred HHHhc
Q 026247 183 PRLLK 187 (241)
Q Consensus 183 ~~~l~ 187 (241)
.+++.
T Consensus 303 ~~l~~ 307 (342)
T 2iuy_A 303 AGLPA 307 (342)
T ss_dssp HTSCC
T ss_pred HHHHH
Confidence 88764
No 184
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=55.96 E-value=72 Score=25.03 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=55.2
Q ss_pred HHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcE
Q 026247 67 LLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPV 145 (241)
Q Consensus 67 ~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pI 145 (241)
.|...+.-+. ...+.+++.+.+..+ ....+++|-+.+..| ++.+.++.+|.....+. +
T Consensus 6 ~~~~~~~i~~~~~~~~~~~~~~~~~~------------------~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~-~ 64 (205)
T 1wa3_A 6 LFKKHKIVAVLRANSVEEAKEKALAV------------------FEGGVHLIEITFTVP--DADTVIKELSFLKEKGA-I 64 (205)
T ss_dssp HHHHHCEEEEECCSSHHHHHHHHHHH------------------HHTTCCEEEEETTST--THHHHHHHTHHHHHTTC-E
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHH------------------HHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCc-E
Confidence 3444554333 345667766665433 344577777766654 56777888875421133 3
Q ss_pred EEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHH
Q 026247 146 VVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 146 I~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i 182 (241)
|-.....+.+....+.+.|+|.. .-|....++.+..
T Consensus 65 ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~ 100 (205)
T 1wa3_A 65 IGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEISQFC 100 (205)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHH
T ss_pred EEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHHH
Confidence 33433346777889999999755 6676555544443
No 185
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=55.88 E-value=82 Score=25.67 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=47.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|..+|-++......++.+...|+ .+. ..+++.+.+..+... ......||+|++|....
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~----------------~~~~~~fD~V~~d~~~~ 167 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD----------------EKNHGSYDFIFVDADKD 167 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS----------------GGGTTCBSEEEECSCST
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhc----------------cCCCCCEEEEEEcCchH
Confidence 46899999999999999999988776 354 467777766544100 00045799999996532
Q ss_pred CCCHHHHHHHHh
Q 026247 125 GMTGYDLLKRLK 136 (241)
Q Consensus 125 ~~~G~el~~~lr 136 (241)
+-..+++.+.
T Consensus 168 --~~~~~l~~~~ 177 (247)
T 1sui_A 168 --NYLNYHKRLI 177 (247)
T ss_dssp --THHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 3344555554
No 186
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=55.15 E-value=66 Score=26.14 Aligned_cols=41 Identities=32% Similarity=0.345 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++.+++++... ++||++-.+-...+.+.+++.+|+++++.=
T Consensus 180 ~~~i~~l~~~~--~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 180 YDLLRRAKRIC--RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHC--SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhhc--CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 45777777432 689887766666688889999999999864
No 187
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=55.07 E-value=46 Score=28.23 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 141 KDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 141 ~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
..+|+|+.-...... +..+.| .+++..| +.++|.+.+.+++..
T Consensus 300 ~G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp GTCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 578998664312222 235668 8899988 999999999998853
No 188
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=54.94 E-value=33 Score=27.10 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=36.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..|+|-+... ...|.+.++.++. ..+++||++..+-. .+.+.+++.+|++.+..
T Consensus 124 Gad~vk~~~~--~~~g~~~~~~l~~-~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 124 GHTILKLFPG--EVVGPQFVKAMKG-PFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp TCCEEEETTH--HHHHHHHHHHHHT-TCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CCCEEEEcCc--cccCHHHHHHHHH-hCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 4666654321 1237788888874 33478887766554 67888999999998754
No 189
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=54.90 E-value=21 Score=33.05 Aligned_cols=58 Identities=9% Similarity=0.201 Sum_probs=43.0
Q ss_pred CCCccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|...+... -++++++++.. ++++||++ ..-...+....+.++|++.+..
T Consensus 241 ~aG~d~I~id~a~g~~~~~~~~i~~ir~~-~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 241 EAGVDVLLIDSSHGHSEGVLQRIRETRAA-YPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHHH-CTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred hccCceEEeccccccchHHHHHHHHHHHH-CCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 34689999999876543 35788888854 46788876 3334578888999999987765
No 190
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=54.89 E-value=8.6 Score=33.76 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=68.1
Q ss_pred HHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC----CC-CCHHHHHHHH
Q 026247 63 ILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM----PG-MTGYDLLKRL 135 (241)
Q Consensus 63 ~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m----p~-~~G~el~~~l 135 (241)
..-..|+..|+.+. -+++|-..+.+| ..-++|.|=+|-.+ .. .....+++.|
T Consensus 216 ~~l~~Lr~~G~~ialDDFGtG~ssl~~L---------------------~~lp~d~iKID~sfv~~~~~~~~~~~iv~~i 274 (340)
T 4hjf_A 216 VILKTLRDAGAGLALDDFGTGFSSLSYL---------------------TRLPFDTLKIDRYFVRTMGNNAGSAKIVRSV 274 (340)
T ss_dssp HHHHHHHHHTCEEEEECTTSSSCGGGTG---------------------GGSCCSEEEECHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccccCCCCCcchHHHH---------------------HhCCCChhcccHHhhhcccCCHhHHHHHHHH
Confidence 34455677898765 488888888888 56789999999643 11 1223344443
Q ss_pred hhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHHHHHHh
Q 026247 136 KVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 136 r~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~i~~~l 186 (241)
-.. ..-++.+ +.-+-.+.+....+.+.|++ .|+.||...+++...+.+..
T Consensus 275 i~la~~lg~~v-vAEGVEt~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~ 329 (340)
T 4hjf_A 275 VKLGQDLDLEV-VAEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAY 329 (340)
T ss_dssp HHHHHHHTCEE-EEECCCSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHHH
T ss_pred HHHHHHcCCEE-EEEeCCcHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhcc
Confidence 211 1123444 45566678888888999998 34789999999988877654
No 191
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=54.79 E-value=48 Score=29.83 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=35.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
...|+||+-+.-+. .-..++..+|. ..+.++||+-+.. ........++|++..+.
T Consensus 67 ~~A~~viv~~~~~~-~n~~i~~~ar~-~~p~~~Iiara~~--~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 67 AKAEVLINAIDDPQ-TNLQLTEMVKE-HFPHLQIIARARD--VDHYIRLRQAGVEKPER 121 (413)
T ss_dssp TTCSEEEECCSSHH-HHHHHHHHHHH-HCTTCEEEEEESS--HHHHHHHHHTTCSSCEE
T ss_pred CccCEEEECCCChH-HHHHHHHHHHH-hCCCCeEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 45788887654321 23445555563 3467788776654 56777788999997764
No 192
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=54.71 E-value=62 Score=23.90 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLE 179 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~ 179 (241)
.+++++++. ...+++++|+.........+...|...|+..+-...+..
T Consensus 42 ~~~l~~l~~---~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~ 89 (162)
T 2p9j_A 42 GIGIKLLQK---MGITLAVISGRDSAPLITRLKELGVEEIYTGSYKKLEIY 89 (162)
T ss_dssp HHHHHHHHT---TTCEEEEEESCCCHHHHHHHHHTTCCEEEECC--CHHHH
T ss_pred HHHHHHHHH---CCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCCHHHH
Confidence 377888874 357899999988777777777889998886533333333
No 193
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=54.52 E-value=31 Score=27.74 Aligned_cols=57 Identities=9% Similarity=0.027 Sum_probs=38.9
Q ss_pred CCccEEEEeCCCCC--------CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 112 SRVNLIMTDYCMPG--------MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 112 ~~~DlVllD~~mp~--------~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
...|.|.++--.|. .-|++.+++++......+|||++-+-. .+.+.+++++|++++-
T Consensus 106 ~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVa 170 (210)
T 3ceu_A 106 HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAV 170 (210)
T ss_dssp GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEE
T ss_pred hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEE
Confidence 34799987755432 236788888774211478998876544 7788889999999874
No 194
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=54.47 E-value=26 Score=30.28 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=20.9
Q ss_pred ccccCCccEEEEEeCCH----HHHHHHHHHHhhcCcEEEEEC
Q 026247 42 QQQQQETFHVLAVDDSL----IDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 42 ~~~~~~~~~VLIVDDd~----~~~~~l~~~L~~~g~~V~~~~ 79 (241)
+..+...||||++-... .-...+...|...|++|+.+.
T Consensus 9 ~~~~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~ 50 (398)
T 4fzr_A 9 GVPRGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAA 50 (398)
T ss_dssp ------CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEc
Confidence 34445568999885431 112346677777899887654
No 195
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=54.40 E-value=26 Score=30.09 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=45.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
..|++++-.. .+.-|..+++.+- ..+|||+....... +.+..|-.+++..|-+.++|.+.+.+++.
T Consensus 284 ~adv~v~ps~-~e~~~~~~~EAma----~G~PvI~~~~~~~~----e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 284 MSDLMLLLSE-KESFGLVLLEAMA----CGVPCIGTRVGGIP----EVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp TCSEEEECCS-CCSCCHHHHHHHH----TTCCEEEECCTTST----TTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred hCCEEEeccc-cCCCchHHHHHHh----cCCCEEEecCCChH----HHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 4578776543 3444667777665 46888765432222 23456778999999999999999999885
No 196
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=54.28 E-value=55 Score=26.62 Aligned_cols=69 Identities=10% Similarity=0.242 Sum_probs=45.9
Q ss_pred CCcc-EEEEeCCCCC-CC--HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC------CCChHHHHHH
Q 026247 112 SRVN-LIMTDYCMPG-MT--GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK------PVRLSDLEKL 181 (241)
Q Consensus 112 ~~~D-lVllD~~mp~-~~--G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K------P~~~~~L~~~ 181 (241)
..++ +++++..-.+ .. .++++++++.. ..+|||+-.+-...+.+.++++.|+++++.= |++..++...
T Consensus 163 ~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~--~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~ 240 (253)
T 1thf_D 163 RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL--TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 240 (253)
T ss_dssp TTCSEEEEEETTTTTSCSCCCHHHHHHHGGG--CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHH
T ss_pred CCCCEEEEEeccCCCCCCCCCHHHHHHHHHh--cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHH
Confidence 3456 4446654222 12 37888998853 3789998888777899999999999987543 4455555444
Q ss_pred H
Q 026247 182 Q 182 (241)
Q Consensus 182 i 182 (241)
+
T Consensus 241 l 241 (253)
T 1thf_D 241 L 241 (253)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=53.77 E-value=99 Score=25.96 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCC-CccEEEEeCCC-C--CCCHHHHHHHHh
Q 026247 62 KILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEES-RVNLIMTDYCM-P--GMTGYDLLKRLK 136 (241)
Q Consensus 62 ~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DlVllD~~m-p--~~~G~el~~~lr 136 (241)
..+.+..++.|..+ ..+.+.+|+...+ .. .+|+|-+...- . +.| ++...++.
T Consensus 140 ~~l~~~a~~lGl~~lvEv~~~eE~~~A~----------------------~l~g~~iIGinnr~l~t~~~d-~~~~~~l~ 196 (251)
T 1i4n_A 140 KEIYEAAEELGMDSLVEVHSREDLEKVF----------------------SVIRPKIIGINTRDLDTFEIK-KNVLWELL 196 (251)
T ss_dssp HHHHHHHHTTTCEEEEEECSHHHHHHHH----------------------TTCCCSEEEEECBCTTTCCBC-TTHHHHHG
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHH----------------------hcCCCCEEEEeCcccccCCCC-HHHHHHHH
Confidence 33444445689876 5789999987776 33 57888665422 1 122 44555555
Q ss_pred hcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 137 VSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 137 ~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
..-.+++++|.=++-...+++.++.+. ++++|+-
T Consensus 197 ~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 197 PLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVG 230 (251)
T ss_dssp GGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEEC
T ss_pred HhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEc
Confidence 333345677777777789999999999 9999764
No 198
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=52.82 E-value=37 Score=27.65 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=46.2
Q ss_pred cc-EEEEeCCCCC-CC--HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe------CCCChHHHHHHH
Q 026247 114 VN-LIMTDYCMPG-MT--GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL------KPVRLSDLEKLQ 182 (241)
Q Consensus 114 ~D-lVllD~~mp~-~~--G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~------KP~~~~~L~~~i 182 (241)
++ +++.+..-.+ .. .++++++++.. ..+|||+...-...+.+.++++.|+++.+. .|++..++...+
T Consensus 166 ~~~i~~~~~~~~g~~~g~~~~~i~~l~~~--~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 166 AGEILLTSMDRDGTKEGYDLRLTRMVAEA--VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYL 242 (252)
T ss_dssp CCEEEEEETTTTTTCSCCCHHHHHHHHHH--CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCEEEEecccCCCCcCCCCHHHHHHHHHH--cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45 4555554222 12 38899999854 378999888888889999999999998864 355666655543
No 199
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=52.64 E-value=64 Score=25.68 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=37.3
Q ss_pred CccEEEEeCCCC--------CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIMTDYCMP--------GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVllD~~mp--------~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.+|.|++..-.| ...|++.+++++... +++||++.-+-. .+.+.+++++|++++..
T Consensus 136 g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~-~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 136 GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG-ISIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT-CCCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC-CCCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 478888622222 123688888887432 248988776555 77777888999998743
No 200
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=52.44 E-value=86 Score=27.00 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=57.8
Q ss_pred cCCccEEEEEeCCHHHH-HHHHHHHhhcCcEEEEE--CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 45 QQETFHVLAVDDSLIDR-KILENLLRVSSYQVTCV--DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~-~~l~~~L~~~g~~V~~~--~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
....++|.||---..-+ ..+..+....+++++.+ .+.+.+.+... ......+ .|+
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---------------------~~g~~~~-~~~ 81 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTE---------------------RFGGEPV-EGY 81 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHH---------------------HHCSEEE-ESH
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHH---------------------HcCCCCc-CCH
Confidence 34568999999877766 34555444447877643 34444433331 1111111 221
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
+.+-.. +++-+|+++.. ...+....|+++|..=|+-||+ +.++...++..+.
T Consensus 82 -----------~~ll~~--~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~ 137 (350)
T 3rc1_A 82 -----------PALLER--DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVAR 137 (350)
T ss_dssp -----------HHHHTC--TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred -----------HHHhcC--CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 222212 33444444333 3466778889999988899997 4556555555443
No 201
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=52.28 E-value=19 Score=30.39 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=35.4
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.+.+.+++++.. .++|||+..+-.+.+.+.+++++||+++++=
T Consensus 165 ~~~~~l~~i~~~--~~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 165 LNPLNLSFIIEQ--AKVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp SCHHHHHHHHHH--CSSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHhc--CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 357888888853 4799999888888999999999999988654
No 202
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=52.07 E-value=27 Score=31.19 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=40.1
Q ss_pred CCCccEEEEeCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|.......+ ++.++++|.. ++++|||+= .-...+....+.++|+|...+
T Consensus 110 ~aGvdvI~id~a~G~~~~~~e~I~~ir~~-~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 110 DAGADFFCVDVAHAHAKYVGKTLKSLRQL-LGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HTTCCEEEEECSCCSSHHHHHHHHHHHHH-HTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HcCCCEEEEeCCCCCcHhHHHHHHHHHHh-cCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 446899999976533222 5678888853 357787761 123578888999999987775
No 203
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=51.69 E-value=6.9 Score=31.28 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=41.3
Q ss_pred EeCCCCC--CCHHHHHHHHhhcCCCCCcEEE--EecCCChHHHHHHHHcCCcceEeCCCCh-HHHHHHHHHH
Q 026247 119 TDYCMPG--MTGYDLLKRLKVSSWKDVPVVV--MSSENVPSRVTMCLEEGAEEFLLKPVRL-SDLEKLQPRL 185 (241)
Q Consensus 119 lD~~mp~--~~G~el~~~lr~~~~~~~pII~--lsa~~~~~~~~~a~~~Ga~dyL~KP~~~-~~L~~~i~~~ 185 (241)
+++.++- .+|.++++.||.. .++.||++ ++..........+.++|++....-+... ..+..++..+
T Consensus 29 iev~~~~~~~~g~~~i~~l~~~-~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 29 IELGTPLIKAEGLSVITAVKKA-HPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAA 99 (207)
T ss_dssp EEECHHHHHHHCTHHHHHHHHH-STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred EEECcHHHHhhCHHHHHHHHHh-CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHH
Confidence 6665542 4678889999854 34678775 4432123447889999999887666554 4444444433
No 204
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=51.59 E-value=37 Score=28.00 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=39.4
Q ss_pred cc-EEEEeCCCCCC---CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 114 VN-LIMTDYCMPGM---TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 114 ~D-lVllD~~mp~~---~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.| +.+.|....+. .-+++++.++.. ..+||++.....+.+.+..++..|++..+.=
T Consensus 44 a~~i~v~d~~~~~~~~g~~~~~i~~i~~~--~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 44 AGEILLTSIDRDGTKSGYDTEMIRFVRPL--TTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp CSEEEEEETTTSSCSSCCCHHHHHHHGGG--CCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CCEEEEEecCcccCCCcccHHHHHHHHHh--cCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 44 44567544321 127888888743 4789998877777788999999999988664
No 205
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=51.43 E-value=54 Score=25.51 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=32.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhh
Q 026247 47 ETFHVLAV----DDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLI 91 (241)
Q Consensus 47 ~~~~VLIV----DDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~ 91 (241)
-..+||++ +|.......|..+.-..++.+..+.+.+||-.+|..+
T Consensus 83 y~lrVLL~~VDv~d~~~~L~eL~~~c~~~~~TLiLawS~eEaa~Yle~~ 131 (146)
T 2a1i_A 83 FALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETY 131 (146)
T ss_dssp SSEEEEEEECCSSSCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHH
T ss_pred cceEEEEEEEeCCChHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHHH
Confidence 34677776 4555555555555556799999999999999998654
No 206
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=51.40 E-value=20 Score=32.08 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=59.9
Q ss_pred HHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC----CCCHHHHHHHHhh
Q 026247 64 LENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP----GMTGYDLLKRLKV 137 (241)
Q Consensus 64 l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp----~~~G~el~~~lr~ 137 (241)
....|+..|+.+. -+++|-..+.+| ..-++|.|=+|-.+- ......+++.+-.
T Consensus 327 ~l~~l~~~G~~ialDDfG~g~ssl~~L---------------------~~l~~d~iKiD~~~i~~~~~~~~~~~~~~~i~ 385 (437)
T 3hvb_A 327 LTQGLATLHCQAAISQFGCSLNPFNAL---------------------KHLTVQFIKIDGSFVQDLNQVENQEILKGLIA 385 (437)
T ss_dssp HHHHHHHTTCEEEEEEETCSSSHHHHH---------------------TTSCCSEEEECGGGSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEcCCCCCccHHHHH---------------------hhCCCCEEEECHHHHHhHhhCcHHHHHHHHHH
Confidence 4455677898764 689999999998 567899999995442 1122233333322
Q ss_pred c-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHH
Q 026247 138 S-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSD 177 (241)
Q Consensus 138 ~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~ 177 (241)
. ....+.+| ..+-.+.+....+.+.|++ .|+.||...++
T Consensus 386 ~~~~~~~~vi-aegVEt~~~~~~l~~~G~~~~QG~~~~~P~~~~~ 429 (437)
T 3hvb_A 386 ELHEQQKLSI-VPFVESASVLATLWQAGATYIQGYYLQGPSQAMD 429 (437)
T ss_dssp HHHHTTCEEE-ECCCCSHHHHHHHHHHTCSEEECTTTCCCBSSCC
T ss_pred HHHHcCCCEE-eeeeCCHHHHHHHHHcCCCEeccccCCCCCcccc
Confidence 1 11244444 5677788888888999987 34778876543
No 207
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=51.08 E-value=21 Score=30.46 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=66.9
Q ss_pred HHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC---CCC--HHHHHHHHhh
Q 026247 65 ENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP---GMT--GYDLLKRLKV 137 (241)
Q Consensus 65 ~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp---~~~--G~el~~~lr~ 137 (241)
...|+..|+.+. -+++|-..+.+| ..-++|.|=+|-.+- ..+ ...+++.|-.
T Consensus 169 l~~Lr~~G~~ialDDFGtG~ssl~~L---------------------~~l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~ 227 (294)
T 2r6o_A 169 LDALRARGVRLALDDFGTGYSSLSYL---------------------SQLPFHGLKIDQSFVRKIPAHPSETQIVTTILA 227 (294)
T ss_dssp HHHHHHHTCEEEEEEETSSCBCHHHH---------------------HHSCCCEEEECHHHHTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCCCCchhHHHH---------------------HhCCCCEEEECHHHHhhhhcChHHHHHHHHHHH
Confidence 345677898764 688888888888 456799999995431 112 2334444432
Q ss_pred c-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHHHHHHh
Q 026247 138 S-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 138 ~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~i~~~l 186 (241)
. ..-++.+ +..+-.+.+....+.+.|++ .|+.||...+++...+.+.-
T Consensus 228 la~~lg~~v-vAEGVEt~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~ 280 (294)
T 2r6o_A 228 LARGLGMEV-VAEGIETAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDRQK 280 (294)
T ss_dssp HHHHTTCEE-EECCCCSHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHHHH
T ss_pred HHHHCCCEE-EEecCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHhhh
Confidence 1 1123444 46667788888889999998 35899999999988776643
No 208
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=50.83 E-value=20 Score=31.04 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=47.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-CC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-GM 126 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~~ 126 (241)
.-++.+||-++.....+++-+...+-.-+...|+..++..+. ....++|+|++|---. ..
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~-------------------~~~~~fdLVfiDPPYe~k~ 173 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALL-------------------PPPEKRGLIFIDPSYERKE 173 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHC-------------------SCTTSCEEEEECCCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhc-------------------CCCCCccEEEECCCCCCCc
Confidence 358999999999999999988753322334678888887661 1234699999996443 23
Q ss_pred CHHHHHHHHh
Q 026247 127 TGYDLLKRLK 136 (241)
Q Consensus 127 ~G~el~~~lr 136 (241)
+.-.+++.|.
T Consensus 174 ~~~~vl~~L~ 183 (283)
T 2oo3_A 174 EYKEIPYAIK 183 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 209
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=50.70 E-value=28 Score=33.52 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEE---CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-CC-HHHHH
Q 026247 58 LIDRKILENLLRVSSYQVTCV---DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-MT-GYDLL 132 (241)
Q Consensus 58 ~~~~~~l~~~L~~~g~~V~~~---~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~~-G~el~ 132 (241)
..-...+..+|+..||+|+.. .+ ++.++.. .+..+|+|.+...+.. +. .-+++
T Consensus 524 d~ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa---------------------~e~~adiv~lSsl~~~~~~~~~~v~ 581 (637)
T 1req_B 524 GGREGFSSPVWHIAGIDTPQVEGGTT-AEIVEAF---------------------KKSGAQVADLCSSAKVYAQQGLEVA 581 (637)
T ss_dssp HHHHHHHHHHHHHTTCBCCEEECCCH-HHHHHHH---------------------HHHTCSEEEEECCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHH---------------------HhcCCCEEEEecccHHHHHHHHHHH
Confidence 344456778899999998753 34 6666666 4557899888755432 11 24577
Q ss_pred HHHhhcCCCCCcEEEEecCCCh--HHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 133 KRLKVSSWKDVPVVVMSSENVP--SRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 133 ~~lr~~~~~~~pII~lsa~~~~--~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+.|+.... ..|++.+.... +......+ |+++|+.--.+..++...+..-+
T Consensus 582 ~~Lk~aG~---~~V~vgG~P~~d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~~~l 633 (637)
T 1req_B 582 KALKAAGA---KALYLSGAFKEFGDDAAEAEK-LIDGRLFMGMDVVDTLSSTLDIL 633 (637)
T ss_dssp HHHHHTTC---SEEEEESCGGGGGGGHHHHHH-HCCCEECTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCC---CeEEEeCCCCccchhhHHHHh-ccceEecCCcCHHHHHHHHHHHh
Confidence 77775432 33456664322 12345556 99999988777766655554443
No 210
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=50.58 E-value=24 Score=29.04 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=46.4
Q ss_pred CCccEEEEeC---CC-CC-CCHHHHHHHHhhcCCCCCcEE--EEecCCChHHHHHHHHcCCcceEeCCC--ChHHHHHHH
Q 026247 112 SRVNLIMTDY---CM-PG-MTGYDLLKRLKVSSWKDVPVV--VMSSENVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQ 182 (241)
Q Consensus 112 ~~~DlVllD~---~m-p~-~~G~el~~~lr~~~~~~~pII--~lsa~~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i 182 (241)
...|++=+|+ .. |. ..|.++++.||.. .+.|+. +++. +.......+.++|++++..-.. ..++....+
T Consensus 29 ~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~--~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~ 105 (230)
T 1tqj_A 29 AGADWIHVDVMDGRFVPNITIGPLIVDAIRPL--TKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVEHNASPHLHRTL 105 (230)
T ss_dssp TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG--CCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHH
T ss_pred cCCCEEEEEEEecCCCcchhhhHHHHHHHHhh--cCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcccccchhHHHHH
Confidence 3455555554 21 22 2367999999853 245665 6674 3355778899999999877655 445666666
Q ss_pred HHHhc
Q 026247 183 PRLLK 187 (241)
Q Consensus 183 ~~~l~ 187 (241)
+.+..
T Consensus 106 ~~i~~ 110 (230)
T 1tqj_A 106 CQIRE 110 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 211
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=50.53 E-value=16 Score=32.40 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-----CCCH
Q 026247 56 DSLIDRKILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-----GMTG 128 (241)
Q Consensus 56 Dd~~~~~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-----~~~G 128 (241)
+.......+. .|+..|+.+. -+++|-..+.+| ..-++|.|=+|-.+- +...
T Consensus 274 ~~~~~~~~l~-~l~~~G~~ialDDfG~g~ssl~~L---------------------~~l~~d~iKiD~~~v~~~~~~~~~ 331 (400)
T 3sy8_A 274 APASSLENLV-RLWIMGCGLAMDDFGAGYSSLDRL---------------------CEFPFSQIKLDRTFVQKMKTQPRS 331 (400)
T ss_dssp CCHHHHHHHH-HHHHHTCEEEEEEECSCSGGGGSS---------------------SSCCCSEEEECTHHHHHHHHCTTH
T ss_pred CHHHHHHHHH-HHHHCCCEEEEECCCCchhhHHHH---------------------HhCCCCEEEECHHHHhhhhcChhH
Confidence 4444444444 4667898764 689998888888 567899999996431 2233
Q ss_pred HHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~~~~L~~~i~~~ 185 (241)
..+++.+-.. ..-++.+ +..+-.+.+....+.+.|++ .|+.||...+++...+...
T Consensus 332 ~~~v~~i~~~a~~l~~~v-vaEGVEt~~~~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~~ 392 (400)
T 3sy8_A 332 CAVISSVVALAQALGISL-VVEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCSGS 392 (400)
T ss_dssp HHHHHHHHHHHHHHTCEE-EECCCCCHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCeE-EEecCCcHHHHHHHHHcCCCEEEcCeecCcCCHHHHHHHHHhc
Confidence 4444444321 1123334 45666778888888899987 3588999999987766553
No 212
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=50.48 E-value=12 Score=31.84 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEec------CCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSS------ENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa------~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
+++++++| ..+|+|+|+= ++-.....+|.++|++++|.-....++.......+
T Consensus 79 ~~~~~~~r----~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~ 137 (252)
T 3tha_A 79 FELLARIK----TKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKEC 137 (252)
T ss_dssp HHHHHHCC----CSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHh----cCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 44444444 2389999874 34566778899999999999866666644443333
No 213
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=50.38 E-value=88 Score=25.15 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=6.5
Q ss_pred CccEEEEeCCCC
Q 026247 113 RVNLIMTDYCMP 124 (241)
Q Consensus 113 ~~DlVllD~~mp 124 (241)
..-+|++|...+
T Consensus 85 ~iPvV~i~~~~~ 96 (276)
T 3jy6_A 85 QMPVVSVDREMD 96 (276)
T ss_dssp SSCEEEESCCCT
T ss_pred CCCEEEEecccC
Confidence 344666665544
No 214
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=50.02 E-value=6.3 Score=31.49 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=25.0
Q ss_pred E-EEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 50 H-VLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 50 ~-VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
+ |+|||........+.++|+..|+.+..+...
T Consensus 2 ~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~ 34 (195)
T 1qdl_B 2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRND 34 (195)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred CEEEEEECCCchHHHHHHHHHhCCCEEEEEeCC
Confidence 5 9999976666667888999899988776653
No 215
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=49.87 E-value=50 Score=26.12 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=27.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKA 84 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~ea 84 (241)
+|+|||=-.-+...+.+.|+..|++++.+.+.++.
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l 38 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV 38 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH
Confidence 69999965555666778899999999988886543
No 216
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=49.56 E-value=67 Score=27.79 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=51.2
Q ss_pred hhcCc-EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC--CCCH----------HHHHHHH
Q 026247 69 RVSSY-QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP--GMTG----------YDLLKRL 135 (241)
Q Consensus 69 ~~~g~-~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp--~~~G----------~el~~~l 135 (241)
++.|+ .+.++.|.++|.+.. .-.+|+|++...+- +.-| .+.++.+
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA----------------------~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i 217 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMA----------------------KAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINEC 217 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHH----------------------HHTCSEEEEECSCC---------CCCHHHHHHHHHHH
T ss_pred HHCCCeEEEecCCHHHHHHHH----------------------HcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHH
Confidence 45674 667899999998775 34689999986542 2222 2233333
Q ss_pred hh---cCCCCCcEEEEe-cCCChHHHHHHHHc--CCcceEeC
Q 026247 136 KV---SSWKDVPVVVMS-SENVPSRVTMCLEE--GAEEFLLK 171 (241)
Q Consensus 136 r~---~~~~~~pII~ls-a~~~~~~~~~a~~~--Ga~dyL~K 171 (241)
.. .-.+++.|+.-. .-...+++..+++. |+++|+.-
T Consensus 218 ~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 218 IEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp HHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEES
T ss_pred HHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEee
Confidence 21 123565444333 33578899999999 99999875
No 217
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=49.34 E-value=60 Score=27.89 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=56.0
Q ss_pred EEEEEeCCHHHHH----HHHHHHhhcCc---EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 50 HVLAVDDSLIDRK----ILENLLRVSSY---QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 50 ~VLIVDDd~~~~~----~l~~~L~~~g~---~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
-+||.|||-.... .++..-+..+. -...+.+.+++.+.+. ...|.|.+|-.
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~----------------------aGaD~I~ld~~ 225 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALE----------------------AGADLILLDNF 225 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHH----------------------HTCSEEEEESC
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH----------------------cCCCEEEECCC
Confidence 4788887765432 23333333443 1236788999988772 34799999974
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
-| -. ++.........+|+++ ++--+.+.+....+.|++.+-
T Consensus 226 ~~----~~-~k~av~~v~~~ipi~A-sGGIt~eni~~~a~tGvD~Is 266 (286)
T 1x1o_A 226 PL----EA-LREAVRRVGGRVPLEA-SGNMTLERAKAAAEAGVDYVS 266 (286)
T ss_dssp CH----HH-HHHHHHHHTTSSCEEE-ESSCCHHHHHHHHHHTCSEEE
T ss_pred CH----HH-HHHHHHHhCCCCeEEE-EcCCCHHHHHHHHHcCCCEEE
Confidence 32 22 2333222113577765 566778899999999997654
No 218
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=49.08 E-value=1.1e+02 Score=27.00 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=44.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcC---------CcceEeCCCChHHHHHHHHH
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEG---------AEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~G---------a~dyL~KP~~~~~L~~~i~~ 184 (241)
.|++++--. .+.-|..+++.+. ..+|||+. .. .-..+.+..| .++|+..|.+.++|.+.+.+
T Consensus 367 adv~v~pS~-~E~~g~~~lEAma----~G~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ 437 (485)
T 2qzs_A 367 ADVILVPSR-FEPCGLTQLYGLK----YGTLPLVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRR 437 (485)
T ss_dssp CSEEEECCS-CCSSCSHHHHHHH----HTCEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHH
T ss_pred CCEEEECCc-cCCCcHHHHHHHH----CCCCEEEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHH
Confidence 577766433 3444666666665 36788754 22 3344556677 88999999999999999999
Q ss_pred Hh
Q 026247 185 LL 186 (241)
Q Consensus 185 ~l 186 (241)
++
T Consensus 438 ll 439 (485)
T 2qzs_A 438 AF 439 (485)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 219
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=48.96 E-value=71 Score=25.78 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=47.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|..+|-++......++.+...|+ .+. ..+++.+.+..+... ......||+|++|..-+
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~----------------~~~~~~fD~I~~d~~~~ 158 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQG----------------QESEGSYDFGFVDADKP 158 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS----------------TTCTTCEEEEEECSCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc----------------cCCCCCcCEEEECCchH
Confidence 46899999999999999999988886 254 467877776544100 00035799999996432
Q ss_pred CCCHHHHHHHHh
Q 026247 125 GMTGYDLLKRLK 136 (241)
Q Consensus 125 ~~~G~el~~~lr 136 (241)
+-..+++.+.
T Consensus 159 --~~~~~l~~~~ 168 (237)
T 3c3y_A 159 --NYIKYHERLM 168 (237)
T ss_dssp --GHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 2334445544
No 220
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=48.93 E-value=37 Score=31.33 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCCccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|...+... -.+.+++++.. ++++||++- .-...+....+.++|++....
T Consensus 239 ~aG~d~I~id~a~g~~~~~~~~v~~i~~~-~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 239 AAGVDVVVVDTAHGHSKGVIERVRWVKQT-FPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HTTCSEEEEECSCCSBHHHHHHHHHHHHH-CTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred hcccceEEecccCCcchhHHHHHHHHHHH-CCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 34689999998876533 35788888853 467888763 234578888999999987765
No 221
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=48.93 E-value=86 Score=23.86 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=52.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc-EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY-QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+|.-||-++......+..+...|. .+. ...+..+....+ ....||+|++|.-...
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---------------------~~~~fD~i~~~~p~~~ 125 (189)
T 3p9n_A 67 AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG---------------------TTSPVDLVLADPPYNV 125 (189)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC---------------------CSSCCSEEEECCCTTS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc---------------------cCCCccEEEECCCCCc
Confidence 34799999999999999988887775 343 466776665443 3568999999854433
Q ss_pred C--CHHHHHHHHhh--cCCCCCcEEEEe
Q 026247 126 M--TGYDLLKRLKV--SSWKDVPVVVMS 149 (241)
Q Consensus 126 ~--~G~el~~~lr~--~~~~~~pII~ls 149 (241)
. +-.++++.+.. .-.++-.+++-+
T Consensus 126 ~~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 126 DSADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp CHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred chhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 2 23455666654 223444444433
No 222
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=48.78 E-value=48 Score=24.71 Aligned_cols=76 Identities=5% Similarity=-0.072 Sum_probs=45.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE--EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ--VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
...+|..+|-++......+..+...|+. +....+..+ .+. .....||+|+++..+.
T Consensus 48 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~-------------------~~~~~~D~i~~~~~~~ 105 (178)
T 3hm2_A 48 PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR---AFD-------------------DVPDNPDVIFIGGGLT 105 (178)
T ss_dssp SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG---GGG-------------------GCCSCCSEEEECC-TT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh---hhh-------------------ccCCCCCEEEECCccc
Confidence 3568999999999888888888777653 433444333 220 0126799999988776
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEE
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVV 147 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~ 147 (241)
. ..+++.+...-.+.-.+++
T Consensus 106 ~---~~~l~~~~~~L~~gG~l~~ 125 (178)
T 3hm2_A 106 A---PGVFAAAWKRLPVGGRLVA 125 (178)
T ss_dssp C---TTHHHHHHHTCCTTCEEEE
T ss_pred H---HHHHHHHHHhcCCCCEEEE
Confidence 5 3344555433224444443
No 223
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=48.67 E-value=60 Score=26.36 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=38.6
Q ss_pred EEEEeCCCCCCC---HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 116 LIMTDYCMPGMT---GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 116 lVllD~~mp~~~---G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+.+.|....+.. .+++++.++.. .++||++.....+.+.+.+++..|++..+.=
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~--~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER--VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT--CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred EEEEcCCccccCccccHHHHHHHHHh--CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 455676543322 24556777632 4799999888888999999999999987663
No 224
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=48.42 E-value=77 Score=27.83 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhc---CCCCCcEEEEecCCChHHHHHHHHcCCcce-EeCCCChHHHHHHHHHH
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVS---SWKDVPVVVMSSENVPSRVTMCLEEGAEEF-LLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~---~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy-L~KP~~~~~L~~~i~~~ 185 (241)
...+|.|++|+.-...+--.+...++.. .+...++++=+...+...+..+++.|+++. ++|--+.+++..+...+
T Consensus 61 ~~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~ 139 (339)
T 1izc_A 61 ATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEM 139 (339)
T ss_dssp HTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 4569999999976555554554445432 112255555566667788999999999875 44555778887765554
No 225
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=48.05 E-value=22 Score=26.67 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=59.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.+++.+++==.++.+|.++..+|..+|..+..... .. ....||++|+|-.
T Consensus 5 LdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~de------r~---------------------~~~eyDi~lTDnp--- 54 (117)
T 2kx7_A 5 LDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDE------RL---------------------ISQDYDIFLTDNP--- 54 (117)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCS------SS---------------------SCCCCSEEEEESG---
T ss_pred ccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEeccc------cC---------------------CCCcccEEEecCc---
Confidence 35678888889999999999999999987765421 11 4567999999951
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChH-HHHHHHHHHh
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLS-DLEKLQPRLL 186 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~-~L~~~i~~~l 186 (241)
....-+.+.+++.... ++.=...||--.|..+ .+.+++..++
T Consensus 55 -------------~~~~~~tLLL~~d~~G------~~~l~p~~irvNyN~s~alidAIllLI 97 (117)
T 2kx7_A 55 -------------SNLTASGLLLSDDESG------VREIGPGQLCVNFNMSNAMQEAVLQLI 97 (117)
T ss_dssp -------------GGCSSSEEEECTTCSS------EEEEETTEEEECSSCHHHHHHHHHHHH
T ss_pred -------------cccCcCeEEEecCccc------ccccCCCeEEEeccchHHHHHHHHHHH
Confidence 1234567777765421 1112335666566544 3445555544
No 226
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=47.97 E-value=32 Score=28.93 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.+.++++|.. .++||++=.+-...+.+.+++.+|||++++=
T Consensus 194 ~~~i~~lr~~--~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEY--HAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHT--TCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhc--cCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5788888853 3688776555555888999899999999764
No 227
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=47.85 E-value=31 Score=29.00 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred CccEEEEeCCC----CCC-CHHHHHHHHhhcCCCCCcEEE-EecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 113 RVNLIMTDYCM----PGM-TGYDLLKRLKVSSWKDVPVVV-MSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 113 ~~DlVllD~~m----p~~-~G~el~~~lr~~~~~~~pII~-lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
..|.+=+|+.- |.. -|..+++.||.. .++.|+.+ +--..-..++..+.++||+.+..-.....++.+.+..+.
T Consensus 53 G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~-~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir 131 (246)
T 3inp_A 53 GADNIHFDVMDNHYVPNLTFGPMVLKALRDY-GITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIK 131 (246)
T ss_dssp TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHH-TCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCcchhcCHHHHHHHHHh-CCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHH
Confidence 34545444422 332 388999999854 34677665 322333557888899999988777655556666776664
No 228
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=47.68 E-value=1.3e+02 Score=26.35 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC----CC-CCCHHHHHHH
Q 026247 62 KILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC----MP-GMTGYDLLKR 134 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~----mp-~~~G~el~~~ 134 (241)
..+..+-+..+.-|. .+.+.+++.... +...|.|.+.-. +. +..-++++..
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~----------------------~~Gad~I~vs~~ggr~~~~~~~~~~~l~~ 272 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAV----------------------QHGAAGIIVSNHGARQLDYVPATIMALEE 272 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHH----------------------HTTCSEEEECCGGGTSSTTCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHH----------------------HcCCCEEEECCCCCccCCCcccHHHHHHH
Confidence 445555555554443 466777776665 345788777431 11 1234667777
Q ss_pred HhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-CCC
Q 026247 135 LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-KPV 173 (241)
Q Consensus 135 lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-KP~ 173 (241)
++......+|||+-.+-.+..++.+++.+||+.... .|+
T Consensus 273 v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~ 312 (370)
T 1gox_A 273 VVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPV 312 (370)
T ss_dssp HHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred HHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHH
Confidence 775433479999988888899999999999998754 344
No 229
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=47.68 E-value=20 Score=30.13 Aligned_cols=97 Identities=11% Similarity=-0.020 Sum_probs=56.0
Q ss_pred EEEEEeCCHHHHHHHHHHHh---hcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-
Q 026247 50 HVLAVDDSLIDRKILENLLR---VSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP- 124 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~---~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp- 124 (241)
.|++.-.... ..+.+++. .+|..+ ..+++.+++...+. ...|+|=+.....
T Consensus 131 ~VlL~~~~l~--~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~----------------------~gad~IGvn~~~l~ 186 (254)
T 1vc4_A 131 AALLIVALLG--ELTGAYLEEARRLGLEALVEVHTERELEIALE----------------------AGAEVLGINNRDLA 186 (254)
T ss_dssp EEEEEHHHHG--GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHH----------------------HTCSEEEEESBCTT
T ss_pred EEEECccchH--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------cCCCEEEEccccCc
Confidence 4555443222 44555554 578875 45788888765552 1235554422111
Q ss_pred C-CCHHHHHHHHhhcCCC---CCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 125 G-MTGYDLLKRLKVSSWK---DVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 125 ~-~~G~el~~~lr~~~~~---~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+ ..+++.+.++...... ++|+|..++-.+.+++.++.+ |++++++=
T Consensus 187 ~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 187 TLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp TCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEEC
T ss_pred CCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEe
Confidence 1 1123344444322111 678988888888999999999 99999763
No 230
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=47.52 E-value=68 Score=22.53 Aligned_cols=40 Identities=8% Similarity=-0.084 Sum_probs=32.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
..|++.............+|...||.|....-|-.++..-
T Consensus 56 ~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W~~~ 95 (108)
T 3gk5_A 56 KKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIEE 95 (108)
T ss_dssp SCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHHHHT
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHHHHc
Confidence 3577777777767778888999999999999998888653
No 231
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=47.34 E-value=71 Score=24.22 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=39.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+.+|.++..... ..+|...|+.+..+.+..+++..| ...+.|++++|.
T Consensus 110 L~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l---------------------~~g~~D~~~~~~ 159 (228)
T 2pyy_A 110 LPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKAL---------------------QTKKADAVVFDA 159 (228)
T ss_dssp CTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHH---------------------HTTSSSEEEEEH
T ss_pred cCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHH---------------------HcCCCCEEEecH
Confidence 44668888877663 344556788999999999999999 678899999984
No 232
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=46.92 E-value=60 Score=26.38 Aligned_cols=90 Identities=9% Similarity=0.119 Sum_probs=58.1
Q ss_pred HHHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC----CCCC-CHHHHHHHH
Q 026247 63 ILENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC----MPGM-TGYDLLKRL 135 (241)
Q Consensus 63 ~l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~----mp~~-~G~el~~~l 135 (241)
.....|+..|+.+. .+++|...+.++ ..-++|.|=+|-. +... ....+++.+
T Consensus 147 ~~l~~L~~~G~~ialDdfG~g~s~l~~L---------------------~~l~~d~iKiD~~~v~~~~~~~~~~~~l~~i 205 (250)
T 4f3h_A 147 QFLASVSAMGCKVGLEQFGSGLDSFQLL---------------------AHFQPAFLKLDRSITGDIASARESQEKIREI 205 (250)
T ss_dssp HHHHHHHTTTCEEEEEEETSSTHHHHHH---------------------TTSCCSEEEECHHHHTTTTTCSHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEeCCCCCchHHHHH---------------------hhCCCCEEEECHHHHHhHhcChhhHHHHHHH
Confidence 34455677898764 689999999998 5678999999932 2222 234455554
Q ss_pred hhc-CCCCCcEEEEecCCChHHHHHHHHcCCc----ceEeCCCC
Q 026247 136 KVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE----EFLLKPVR 174 (241)
Q Consensus 136 r~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~----dyL~KP~~ 174 (241)
... ..-++.+ +..+-.+.+....+.+.|++ .|+.||..
T Consensus 206 ~~~a~~l~~~v-iaeGVEt~~~~~~l~~~G~~~~QG~~~~~P~p 248 (250)
T 4f3h_A 206 TSRAQPTGILT-VAEFVADAQSMSSFFTAGVDYVQGDFVAPTGP 248 (250)
T ss_dssp HHHHHHHTCEE-EECCCCCHHHHHHHHHHTCSEECSTTTCCCBS
T ss_pred HHHHHHcCCEE-EEeccCCHHHHHHHHHcCCCEEeeccccCCCC
Confidence 321 1123444 46677788888889999987 23666653
No 233
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=46.91 E-value=62 Score=27.22 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce------EeCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF------LLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy------L~KP~~~~~L~~~i~~~l~ 187 (241)
+++++.++.. .++|||+.-.-.+.+.+.+++.+||+.. +..|....++.+-+..++.
T Consensus 230 ~~~i~~i~~~--~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~ 292 (311)
T 1ep3_A 230 LKLIHQVAQD--VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMD 292 (311)
T ss_dssp HHHHHHHHTT--CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHH
Confidence 4777778743 3789988777778999999999999865 3346666666666666654
No 234
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=46.73 E-value=15 Score=30.56 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=58.5
Q ss_pred HHHHHhhcCcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC---C-CHHHHHHHHhh
Q 026247 64 LENLLRVSSYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG---M-TGYDLLKRLKV 137 (241)
Q Consensus 64 l~~~L~~~g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~---~-~G~el~~~lr~ 137 (241)
....|+..|+.+. -+++|...+.++ ..-++|.|=+|-.+-. . ....+++.+-.
T Consensus 158 ~l~~L~~~G~~ialDDfG~g~ssl~~L---------------------~~l~~d~iKiD~~~v~~~~~~~~~~~l~~ii~ 216 (268)
T 3hv8_A 158 LTQGLATLHCQAAISQFGCSLNPFNAL---------------------KHLTVQFIKIDGSFVQDLNQVENQEILKGLIA 216 (268)
T ss_dssp HHHHHHHTTCEEEEEEETCSSSTTGGG---------------------GTCCCSEEEECGGGGSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEeCCCCChHHHHHH---------------------HhCCCCEEEECHHHHHhhhcChhHHHHHHHHH
Confidence 3445677898764 588888888887 5667999999965422 1 22233333321
Q ss_pred c-CCCCCcEEEEecCCChHHHHHHHHcCCc---c-eEeCCCChHH
Q 026247 138 S-SWKDVPVVVMSSENVPSRVTMCLEEGAE---E-FLLKPVRLSD 177 (241)
Q Consensus 138 ~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~---d-yL~KP~~~~~ 177 (241)
. ....+.+ +..+-.+.+....+.+.|++ | |+.||...++
T Consensus 217 ~~~~~~~~v-iaeGVEt~~~~~~l~~lG~~~~QG~~~~~P~~~~~ 260 (268)
T 3hv8_A 217 ELHEQQKLS-IVPFVESASVLATLWQAGATYIQGYYLQGPSQAMD 260 (268)
T ss_dssp HHHHTTCEE-EECCCCSHHHHHHHHHHTCSEECSTTTCCCBSSCC
T ss_pred HHHHcCCCE-EEEeeCCHHHHHHHHHcCCCEeccCeecCCCcccc
Confidence 1 1124444 45677788888889999987 3 3778876543
No 235
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=46.31 E-value=61 Score=27.58 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=11.1
Q ss_pred CCccEEEEeCCCCCCCH
Q 026247 112 SRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G 128 (241)
..||+||+| .++.+.
T Consensus 181 ~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 181 SEYDHVFVD--TAGRNF 195 (296)
T ss_dssp GGSSEEEEE--CCCCCT
T ss_pred cCCCEEEEe--CCCCCh
Confidence 468999999 555553
No 236
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=46.22 E-value=43 Score=31.08 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCCccEEEEeCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|...+...+ ++++++++.. ++++|||+- .-...+....+.++|++.+..
T Consensus 266 eaGvd~I~Id~a~g~~~~v~~~i~~i~~~-~~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 266 KASVDAIVLDTAHGHSQGVIDKVKEVRAK-YPSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHHH-CTTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred hhccceEEecccccchhhhhhHHHHHHHh-CCCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 457999999988776555 4688888853 467787753 334678888999999987764
No 237
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=46.15 E-value=69 Score=25.07 Aligned_cols=70 Identities=9% Similarity=-0.003 Sum_probs=46.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|..+|-++......++.+...|+. +. ...+..+.+..+.. ......||+|++|...+
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-----------------~~~~~~fD~v~~~~~~~ 151 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIH-----------------AGQAWQYDLIYIDADKA 151 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHT-----------------TTCTTCEEEEEECSCGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhh-----------------ccCCCCccEEEECCCHH
Confidence 568999999999999999999877753 44 46777776655410 00016799999987422
Q ss_pred CCCHHHHHHHHh
Q 026247 125 GMTGYDLLKRLK 136 (241)
Q Consensus 125 ~~~G~el~~~lr 136 (241)
+-..+++.+.
T Consensus 152 --~~~~~l~~~~ 161 (225)
T 3tr6_A 152 --NTDLYYEESL 161 (225)
T ss_dssp --GHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 2233444443
No 238
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=46.03 E-value=82 Score=22.80 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=32.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhh
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGL 90 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~ 90 (241)
-|++...++.....++.+++..||.|.++.+.++..+.+.+
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 34555677777778899999999999999999998777643
No 239
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=45.63 E-value=1.2e+02 Score=26.06 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=53.5
Q ss_pred HHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-----CCCHHHHHHHHhhcCC
Q 026247 67 LLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-----GMTGYDLLKRLKVSSW 140 (241)
Q Consensus 67 ~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-----~~~G~el~~~lr~~~~ 140 (241)
.++..|+.+. .+.+.+++.... ....|.|+++-.-. ....+++++.++..
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~----------------------~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~-- 160 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRME----------------------KIGADAVIAEGMEAGGHIGKLTTMTLVRQVATA-- 160 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHH----------------------HTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH--
T ss_pred HHHHcCCeEEEEeCCHHHHHHHH----------------------HcCCCEEEEECCCCCCCCCCccHHHHHHHHHHh--
Confidence 3444566554 467777765543 34578888863211 13457888888743
Q ss_pred CCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 141 KDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 141 ~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
.++|||+-.+-.+.+.+.+++..|+++..
T Consensus 161 ~~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 161 ISIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 36899888777778999999999998764
No 240
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=45.40 E-value=48 Score=28.66 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=47.9
Q ss_pred CccEEEE-eCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 113 RVNLIMT-DYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 113 ~~DlVll-D~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
-+|.|++ |-++--..| -+.+++.|.. .+..||.+-. .+.+...+++++|+|......++++++..++..+-
T Consensus 168 L~d~vlikdNHi~~~G~i~~Av~~ar~~-~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~ 240 (287)
T 3tqv_A 168 LFDAYLIKENHIRSAGGIAKAVTKAKKL-DSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIAR 240 (287)
T ss_dssp SSSSEEECTTTC----CHHHHHHHHHHH-CTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CccEEEEeHHHHHHhCCHHHHHHHHHhh-CCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhc
Confidence 3566665 443332223 3566777754 4677877633 34588889999999999999999999998887653
No 241
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=45.01 E-value=63 Score=28.15 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=45.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVS-SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~-g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
...+|.+||=++.+....++.+... +-.+. ...++.+.+..+ ....||+||+|...+
T Consensus 112 p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~---------------------~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 112 PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF---------------------TPASRDVIIRDVFAG 170 (317)
T ss_dssp TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC---------------------CTTCEEEEEECCSTT
T ss_pred CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc---------------------cCCCCCEEEECCCCc
Confidence 3458999999999999888887532 12333 467777665432 346799999997655
Q ss_pred CCC-----HHHHHHHHhh
Q 026247 125 GMT-----GYDLLKRLKV 137 (241)
Q Consensus 125 ~~~-----G~el~~~lr~ 137 (241)
... ..++++.++.
T Consensus 171 ~~~~~~L~t~efl~~~~r 188 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHR 188 (317)
T ss_dssp SCCCGGGSBHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHH
Confidence 321 1455666553
No 242
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=44.60 E-value=1e+02 Score=27.43 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=64.3
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHhhcCcEEEEECCHHHHHHHHhhhccc----ccCCCCCCCcccccccCCCccEEEE
Q 026247 49 FHVLAVD--DSLID---RKILENLLRVSSYQVTCVDSGDKALEYLGLIDNL----ENNSNASPSTLSTKKEESRVNLIMT 119 (241)
Q Consensus 49 ~~VLIVD--Dd~~~---~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~DlVll 119 (241)
.+|+||- .++.. ...+.++|...|+.|..-....+.+...... .. ...+. ...........+|+||+
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~DlvI~ 114 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDE-SFGAVKKKFCT---FREDYDDISNQIDFIIC 114 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCS-TTHHHHHHCEE---ECTTTCCCTTTCSEEEE
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhcccccc-ccccccccccc---cccChhhcccCCCEEEE
Confidence 3789984 33333 3445666667798887644333332221000 00 00000 00000112356888887
Q ss_pred eCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcCC
Q 026247 120 DYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 120 D~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~~ 189 (241)
= |.||- +++..+......+||+-+.. |=.+||. +++.+++...+.+++.+.
T Consensus 115 l----GGDGT-~L~aa~~~~~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 115 L----GGDGT-LLYASSLFQGSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp E----SSTTH-HHHHHHHCSSSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred E----cChHH-HHHHHHHhccCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHcCC
Confidence 2 77883 22333322335689987753 6678887 788889999999998764
No 243
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=44.47 E-value=55 Score=26.20 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=43.9
Q ss_pred CccEEE-EeCCCCCC---CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe------CCCChHHHHHHH
Q 026247 113 RVNLIM-TDYCMPGM---TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL------KPVRLSDLEKLQ 182 (241)
Q Consensus 113 ~~DlVl-lD~~mp~~---~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~------KP~~~~~L~~~i 182 (241)
..|.|+ ++..-.++ -.++.+++++.. .++||++-.+-...+.+.+++++|+++++. .+.+..++...+
T Consensus 167 G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~--~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l 244 (253)
T 1h5y_A 167 GAGEILLTSIDRDGTGLGYDVELIRRVADS--VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYL 244 (253)
T ss_dssp TCSEEEEEETTTTTTCSCCCHHHHHHHHHH--CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCCEEEEecccCCCCcCcCCHHHHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHH
Confidence 366664 44442221 146778888753 378998887777778889999999998754 344555544443
No 244
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=44.35 E-value=60 Score=25.63 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=41.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|.-||-++......++.+...|.. |. ...++.+.+..+.. ......||+|++|....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~-----------------~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK-----------------KYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTT-----------------TSCCCCCSEEEECSCGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHH-----------------hcCCCceEEEEEcCCcc
Confidence 568999999999999999998877752 44 46777666544300 00115799999997443
No 245
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=44.17 E-value=1.9e+02 Score=26.58 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=59.9
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHhhcC-cEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVDD----SLIDRKILENLLRVSS-YQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVDD----d~~~~~~l~~~L~~~g-~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+..++++|. .......++.+-+.++ ..+. .+.+.+.|..+. +.-.|.|.+.
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~----------------------~aGad~i~vg 325 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALI----------------------EAGANVVKVG 325 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHH----------------------HHTCSEEEEC
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHH----------------------HhCCCEEEEC
Confidence 345677763 2333344444444443 3333 466777776665 2347888764
Q ss_pred CCCC-----------CCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 121 YCMP-----------GMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 121 ~~mp-----------~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+.-. +...+.++..+... ....+|||+--+-....++.+|+.+||+..+.=
T Consensus 326 ~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 326 IGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp SSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 3211 12234454444321 113689998888888999999999999988653
No 246
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=43.40 E-value=82 Score=26.95 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=43.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCc---------------ce--EeCCCChH
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE---------------EF--LLKPVRLS 176 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~---------------dy--L~KP~~~~ 176 (241)
.|++++--. .+.-|..+++.+- ..+|||+. .. .-..+.+..|.. ++ +..|.+.+
T Consensus 274 adv~v~pS~-~E~~~~~~lEAma----~G~PvI~s-~~---~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~ 344 (413)
T 3oy2_A 274 CDVIVNCSS-GEGFGLCSAEGAV----LGKPLIIS-AV---GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVD 344 (413)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHT----TTCCEEEE-CC---HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHH
T ss_pred CCEEEeCCC-cCCCCcHHHHHHH----cCCCEEEc-CC---CChHHHHccCcccccccccccccccccCcceeeCCCCHH
Confidence 577777333 3444666766654 46888753 22 234455666776 88 99999999
Q ss_pred HHHHHHHHHhc
Q 026247 177 DLEKLQPRLLK 187 (241)
Q Consensus 177 ~L~~~i~~~l~ 187 (241)
+|.+.+ +++.
T Consensus 345 ~la~~i-~l~~ 354 (413)
T 3oy2_A 345 DLVEAF-TFFK 354 (413)
T ss_dssp HHHHHH-HHTT
T ss_pred HHHHHH-HHhc
Confidence 999999 8875
No 247
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=43.36 E-value=60 Score=22.34 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=30.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKAL 85 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal 85 (241)
...|++..............|...||.|.....|-.++
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~W 93 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDEF 93 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHHH
Confidence 34678887777777788888999999888888887775
No 248
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=42.76 E-value=47 Score=27.33 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=39.4
Q ss_pred CccEEEEeCCCCCCCH-------HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIMTDYCMPGMTG-------YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G-------~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..|.|++....|+..| ++-++++|.. ..+.+| .+.+--..+....+.++|||.++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~-~~~~~I-~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ-FPSLDI-EVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH-CTTCEE-EEESSCSTTTHHHHHHHTCCEEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh-cCCCCE-EEeCCcCHHHHHHHHHcCCCEEEE
Confidence 4789988777788766 3446666643 234555 455666788899999999998754
No 249
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=42.64 E-value=93 Score=24.34 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=45.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccC---CCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE---SRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~DlVllD~ 121 (241)
..+|..+|-++......++.+...|+ .+. ...+..+.+..+. .. ..||+|++|.
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~--------------------~~~~~~~~D~v~~d~ 153 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL--------------------AAGEAGTFDVAVVDA 153 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH--------------------HTTCTTCEEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHH--------------------hcCCCCCccEEEECC
Confidence 46899999999999999998887765 344 3567776655441 11 5799999986
Q ss_pred CCCCCCHHHHHHHHh
Q 026247 122 CMPGMTGYDLLKRLK 136 (241)
Q Consensus 122 ~mp~~~G~el~~~lr 136 (241)
. ..+-..+++.+.
T Consensus 154 ~--~~~~~~~l~~~~ 166 (229)
T 2avd_A 154 D--KENCSAYYERCL 166 (229)
T ss_dssp C--STTHHHHHHHHH
T ss_pred C--HHHHHHHHHHHH
Confidence 4 223334455544
No 250
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=42.61 E-value=1.3e+02 Score=24.10 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=58.7
Q ss_pred cCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-C-CHHHHHHHHhhcCCCCCcEEE
Q 026247 71 SSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-M-TGYDLLKRLKVSSWKDVPVVV 147 (241)
Q Consensus 71 ~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~-~G~el~~~lr~~~~~~~pII~ 147 (241)
.|..+. .+.+.+++.... ....|.|-+ .|. . -|.+.++.++. ..+++|++.
T Consensus 103 ~g~~~i~G~~t~~e~~~A~----------------------~~Gad~v~~---fpa~~~gG~~~lk~l~~-~~~~ipvva 156 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERAL----------------------ALGLSALKF---FPAEPFQGVRVLRAYAE-VFPEVRFLP 156 (207)
T ss_dssp HTCCEEEEECSHHHHHHHH----------------------HTTCCEEEE---TTTTTTTHHHHHHHHHH-HCTTCEEEE
T ss_pred hCCCEEecCCCHHHHHHHH----------------------HCCCCEEEE---ecCccccCHHHHHHHHh-hCCCCcEEE
Confidence 454333 477888887765 234677766 453 2 38899999884 345889986
Q ss_pred EecCCChHHHHHHHHcCCcceE-----eCCCChHHHHHHHHHHhc
Q 026247 148 MSSENVPSRVTMCLEEGAEEFL-----LKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 148 lsa~~~~~~~~~a~~~Ga~dyL-----~KP~~~~~L~~~i~~~l~ 187 (241)
+-+ -+.+...+.+.+|++.+. .+ -+..++....++++.
T Consensus 157 iGG-I~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~ 199 (207)
T 2yw3_A 157 TGG-IKEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKA 199 (207)
T ss_dssp BSS-CCGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHH
T ss_pred eCC-CCHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHH
Confidence 654 446888899999998763 33 445556666666553
No 251
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=42.55 E-value=1.7e+02 Score=25.44 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=52.6
Q ss_pred hhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC---------CC-------CCHHHH
Q 026247 69 RVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM---------PG-------MTGYDL 131 (241)
Q Consensus 69 ~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m---------p~-------~~G~el 131 (241)
+..|..|. .+.+.+++.... ...+|.|+++-.- +. ...+++
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~----------------------~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~ 199 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVE----------------------AAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSL 199 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHH----------------------HTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHH
T ss_pred HHCCCeEEEECCCHHHHHHHH----------------------HcCCCEEEEeCCCcCCcCCCcccccccccccccHHHH
Confidence 33565443 567888776554 3458998885321 10 233888
Q ss_pred HHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 132 LKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 132 ~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
++.++.. .++|||+.-+-.+.+.+.+++..|++.+.
T Consensus 200 l~~i~~~--~~iPViaaGGI~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 200 LAQVREA--VDIPVVAAGGIMRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp HHHHHHH--CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHh--cCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 8888743 36899887777689999999999998764
No 252
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=42.41 E-value=1.8e+02 Score=25.68 Aligned_cols=90 Identities=7% Similarity=0.134 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhc-CcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC-----------C
Q 026247 59 IDRKILENLLRVS-SYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM-----------P 124 (241)
Q Consensus 59 ~~~~~l~~~L~~~-g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m-----------p 124 (241)
...+.++.+-+.. +..|. .+.+.++|..+. +.-.|.|.+-..- .
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~----------------------~~Gad~I~vg~~~G~~~~~~~~~~~ 237 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLI----------------------SVGADCLKVGIGPGSICTTRIVAGV 237 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHH----------------------TTTCSEEEECSSCSTTSHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHH----------------------hcCCCEEEECCCCCcCcCccccCCC
Confidence 3444444433444 55554 467777776554 3458888882110 0
Q ss_pred CCCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 125 GMTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 125 ~~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+...++.+..++.. ...++|||+...-.+..++.+++.+||+....
T Consensus 238 g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 238 GVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 22245555665532 22478999888878899999999999998754
No 253
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=42.40 E-value=96 Score=22.51 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=50.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+.++|.|+-|.. .. .-|+-.|+++..+.+.+++.+.++.+. .+..+.+|+++-.+-..
T Consensus 2 ~~mkiaVIgD~d-tv----~GFrLaGi~~~~v~~~ee~~~~~~~l~-----------------~~~digIIlIte~~a~~ 59 (109)
T 2d00_A 2 VPVRMAVIADPE-TA----QGFRLAGLEGYGASSAEEAQSLLETLV-----------------ERGGYALVAVDEALLPD 59 (109)
T ss_dssp CCCCEEEEECHH-HH----HHHHHTTSEEEECSSHHHHHHHHHHHH-----------------HHCCCSEEEEETTTCSC
T ss_pred CccEEEEEeCHH-HH----HHHHHcCCeEEEeCCHHHHHHHHHHHh-----------------hCCCeEEEEEeHHHHHh
Confidence 356888998833 22 234557898888899998877774331 34579999999887662
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEe
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~ls 149 (241)
--+.+.+++. ....|+|+.-
T Consensus 60 -i~~~i~~~~~--~~~~P~Il~I 79 (109)
T 2d00_A 60 -PERAVERLMR--GRDLPVLLPI 79 (109)
T ss_dssp -HHHHHHHHTT--CCCCCEEEEE
T ss_pred -hHHHHHHHHh--CCCCeEEEEE
Confidence 3344555542 2357766553
No 254
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=42.23 E-value=1.1e+02 Score=25.95 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=45.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh--cC----cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVDDSLIDRKILENLLRV--SS----YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~--~g----~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
..+|..||=++......++.+.. .| -.+. ...++.+.+.. ....||+|++|
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----------------------~~~~fD~Ii~d 158 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER----------------------TEERYDVVIID 158 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----------------------CCCCEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh----------------------cCCCccEEEEC
Confidence 45899999999998888887753 12 1233 45677665443 24579999999
Q ss_pred CCCCC-CCH-------HHHHHHHhh
Q 026247 121 YCMPG-MTG-------YDLLKRLKV 137 (241)
Q Consensus 121 ~~mp~-~~G-------~el~~~lr~ 137 (241)
...|. .+| .++++.++.
T Consensus 159 ~~~~~~~~~~~~~l~~~~~l~~~~~ 183 (314)
T 1uir_A 159 LTDPVGEDNPARLLYTVEFYRLVKA 183 (314)
T ss_dssp CCCCBSTTCGGGGGSSHHHHHHHHH
T ss_pred CCCcccccCcchhccHHHHHHHHHH
Confidence 87664 112 466666664
No 255
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=42.19 E-value=41 Score=26.86 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+++++++++.. -++|||+..+-.+.+.+.+++++|++.++.=
T Consensus 163 ~~~~~~~~~~~--~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 163 DFQFLKDVLQS--VDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp HHHHHHHHHHH--CCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHhh--CCCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 45677888743 2689998887778999999999999988653
No 256
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=42.16 E-value=83 Score=25.39 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=7.9
Q ss_pred HHHHHhhcCcEEEEE
Q 026247 64 LENLLRVSSYQVTCV 78 (241)
Q Consensus 64 l~~~L~~~g~~V~~~ 78 (241)
+.+.++..||.+..+
T Consensus 35 i~~~a~~~g~~~~~~ 49 (292)
T 3k4h_A 35 ISSFAHVEGYALYMS 49 (292)
T ss_dssp HHHHHHHTTCEEEEC
T ss_pred HHHHHHHcCCEEEEE
Confidence 444455566665543
No 257
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=42.15 E-value=93 Score=25.15 Aligned_cols=67 Identities=10% Similarity=0.258 Sum_probs=46.4
Q ss_pred CCCcc-EEEEeCC----CCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc-----C-CcceEe------CCC
Q 026247 111 ESRVN-LIMTDYC----MPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE-----G-AEEFLL------KPV 173 (241)
Q Consensus 111 ~~~~D-lVllD~~----mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~-----G-a~dyL~------KP~ 173 (241)
...++ +++.+.. +.+. .++++++++.. ..+|||+...-...+.+.++++. | +++.+. .++
T Consensus 155 ~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~--~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~ 231 (241)
T 1qo2_A 155 EYGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIE--AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGIL 231 (241)
T ss_dssp TTTCCEEEEEETTHHHHTCCC-CHHHHHHHHHH--HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSS
T ss_pred hCCCCEEEEEeecccccCCcC-CHHHHHHHHHh--cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCC
Confidence 34566 5555643 2222 38888988853 36899988888888999999988 9 998754 366
Q ss_pred ChHHHHH
Q 026247 174 RLSDLEK 180 (241)
Q Consensus 174 ~~~~L~~ 180 (241)
+..++..
T Consensus 232 ~~~~~~~ 238 (241)
T 1qo2_A 232 TVEVMKR 238 (241)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6665544
No 258
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=42.12 E-value=95 Score=23.86 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=40.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+.+|.++..... ...+.+.+...++.+..+.+..+++..| ...+.|+++.|.
T Consensus 110 ~g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l---------------------~~G~vDa~~~~~ 162 (239)
T 1lst_A 110 KGKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDL---------------------TAGRLDAALQDE 162 (239)
T ss_dssp TTCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHH---------------------HTTSCSEEEEEH
T ss_pred CCCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHH---------------------HcCCCCEEEeCc
Confidence 4567887766554 4455666655678899999999999999 678899999983
No 259
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=41.99 E-value=23 Score=28.81 Aligned_cols=55 Identities=15% Similarity=0.295 Sum_probs=41.0
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
....||+| --||+.-- ++++++++. ..+|||+=---.+.+++..|+++||+..-+
T Consensus 124 ~~~~PD~i---EiLPGi~p-~iI~~i~~~--~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 124 QKVQPDCI---ELLPGIIP-EQVQKMTQK--LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHCCSEE---EEECTTCH-HHHHHHHHH--HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred hhcCCCEE---EECCchhH-HHHHHHHHh--cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 45678987 33687553 788888754 478988766667899999999999987643
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=41.63 E-value=1e+02 Score=28.01 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=9.5
Q ss_pred CCCccEEEEeCC
Q 026247 111 ESRVNLIMTDYC 122 (241)
Q Consensus 111 ~~~~DlVllD~~ 122 (241)
...||+||+|.-
T Consensus 177 ~~~~DvvIIDTa 188 (433)
T 3kl4_A 177 KNKMDIIIVDTA 188 (433)
T ss_dssp TTTCSEEEEEEC
T ss_pred hcCCCEEEEECC
Confidence 457999999953
No 261
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=41.61 E-value=26 Score=30.39 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEe--cCCChHHHHHHHHcCCcceEe-----CCCChHHHHHHHHHHhcC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMS--SENVPSRVTMCLEEGAEEFLL-----KPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~ls--a~~~~~~~~~a~~~Ga~dyL~-----KP~~~~~L~~~i~~~l~~ 188 (241)
.++++++++.. ..+|||++. .-.+.+....+++.|+++.++ +.-++......+...+..
T Consensus 186 d~elI~~Ike~--~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEK--GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHH--TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc--cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 37888888854 578998773 333688999999999999854 444566666666666643
No 262
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=41.56 E-value=65 Score=27.69 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+.++..|.......+|.+ ... +.+...++.++|+|..+.-+++++.+..++..+-
T Consensus 180 ~~av~~ar~~~~~~~~I~V-EV~-tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~ 235 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEV-EVE-NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIK 235 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEE-EES-SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEE-EeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 3466667743322355555 433 4788899999999888899999999998887764
No 263
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=41.39 E-value=90 Score=21.94 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHH----HHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSR----VTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~----~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
++++.++ ....|+|++..-....+ ..+|.+.|+..-+.|..++++|...++..+..
T Consensus 42 diiksmk---dngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflkt 101 (112)
T 2lnd_A 42 DIIKSMK---DNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKT 101 (112)
T ss_dssp HHHHHHT---TCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHh
Confidence 4444444 34567777765554443 45678899998899999999999999998854
No 264
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=41.37 E-value=73 Score=25.76 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=38.8
Q ss_pred CccEEEEeCCCCCCC-------HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIMTDYCMPGMT-------GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVllD~~mp~~~-------G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..|.|+++-..|+.. +++.++++|... +.+||++. .--..+.+.++.++|+|.++.
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~-~~~pi~v~-GGI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY-PSLDIEVD-GGLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC-TTSEEEEE-SSCSTTTHHHHHHHTCCEEEE
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc-CCCCEEEE-CCcCHHHHHHHHHcCCCEEEE
Confidence 579999988877633 355666776432 36787655 434457788888999998765
No 265
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=41.22 E-value=76 Score=27.43 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=45.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 113 RVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 113 ~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
..++|.+|..- .....++++++++.....+||++=-+-.+.+.+.+++++||+..++-.
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 35899999865 334568899998543127898877777789999999999999887764
No 266
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=41.06 E-value=1e+02 Score=23.89 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=44.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|..||-++......++.+...|+ .+. ...++.+.+..+ .. ||+|++|..
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----------------------~~-fD~v~~~~~-- 135 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ----------------------RD-IDILFMDCD-- 135 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC----------------------CS-EEEEEEETT--
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC----------------------CC-CCEEEEcCC--
Confidence 46899999999999999888877765 344 356665544322 24 999999954
Q ss_pred CCCHHHHHHHHhh
Q 026247 125 GMTGYDLLKRLKV 137 (241)
Q Consensus 125 ~~~G~el~~~lr~ 137 (241)
..+-..+++.+..
T Consensus 136 ~~~~~~~l~~~~~ 148 (210)
T 3c3p_A 136 VFNGADVLERMNR 148 (210)
T ss_dssp TSCHHHHHHHHGG
T ss_pred hhhhHHHHHHHHH
Confidence 3344566666653
No 267
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=41.05 E-value=47 Score=25.93 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=26.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKA 84 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~ea 84 (241)
|+|||.--.-.+...+...|...|++|..+....+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK 36 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 478888888888888888787789988765433333
No 268
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=40.98 E-value=1.4e+02 Score=25.58 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=56.7
Q ss_pred EEEEEeCCHHHH----HHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 50 HVLAVDDSLIDR----KILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 50 ~VLIVDDd~~~~----~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
-+||-|++-... ..++..-+..++ -...+.+.+++.+.+. ...|+|++|-.-
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~----------------------aGaD~I~LDn~~ 224 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLP----------------------EKPELILLDNFA 224 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGG----------------------GCCSEEEEETCC
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH----------------------cCCCEEEECCCC
Confidence 367766654332 223332233332 2346788999998872 357999999733
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
|. +-.+..+.++.. .+.+ .|..|+--+.+.+.+..+.|+|.|.
T Consensus 225 ~~-~~~~~v~~l~~~-~~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 225 VW-QTQTAVQRRDSR-APTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp HH-HHHHHHHHHHHH-CTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred HH-HHHHHHHHhhcc-CCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 31 122344444422 2344 4567787888999999999997654
No 269
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=40.97 E-value=1.3e+02 Score=25.85 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC-------------------------CCCCC--
Q 026247 75 VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC-------------------------MPGMT-- 127 (241)
Q Consensus 75 V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~-------------------------mp~~~-- 127 (241)
+..+.+..++...+ ....|+|.+.-. |+.-+
T Consensus 129 vv~v~~~~Ea~~a~----------------------~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~ 186 (297)
T 4adt_A 129 VCGCTNLGEALRRI----------------------SEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVY 186 (297)
T ss_dssp EEEESSHHHHHHHH----------------------HHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHH
T ss_pred EEEeCCHHHHHHHH----------------------hCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccc
Q ss_pred --------HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 128 --------GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 128 --------G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.++++++++......+.+|+-.+-...+.+.+++.+|+++++.
T Consensus 187 t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 187 NFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp HHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred cccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
No 270
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=40.96 E-value=56 Score=22.61 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=30.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~ 86 (241)
...|+++.............|...||.|....-|-.++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~W~ 94 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWG 94 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHHHC
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHHHH
Confidence 346788877776777788889999999888888877763
No 271
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=40.82 E-value=1.5e+02 Score=25.17 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=30.8
Q ss_pred CCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 142 DVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 142 ~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
++-+|+++.. ...+....|+++|..=|+-||+ +.++...++..+-
T Consensus 82 ~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 130 (340)
T 1zh8_A 82 LVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSE 130 (340)
T ss_dssp CCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 3444555433 3467788899999999999997 6666666655544
No 272
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=40.80 E-value=1.5e+02 Score=24.25 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=37.0
Q ss_pred CHHHHH---HHHHHHhhcCcEEEEECCHHH---HHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHH
Q 026247 57 SLIDRK---ILENLLRVSSYQVTCVDSGDK---ALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYD 130 (241)
Q Consensus 57 d~~~~~---~l~~~L~~~g~~V~~~~~~~e---al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~e 130 (241)
++.... .+.+.++..||.+..+....+ ..+.+..+ ....+|-||+--.... -+
T Consensus 39 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l------------------~~~~vdgiIi~~~~~~---~~ 97 (305)
T 3huu_A 39 NPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMI------------------QSKSVDGFILLYSLKD---DP 97 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHH------------------HTTCCSEEEESSCBTT---CH
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH------------------HhCCCCEEEEeCCcCC---cH
Confidence 455443 455666778998877543221 12222211 4567887776322111 14
Q ss_pred HHHHHhhcCCCCCcEEEEecC
Q 026247 131 LLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~ 151 (241)
.++.++. ..+|+|++-..
T Consensus 98 ~~~~l~~---~~iPvV~i~~~ 115 (305)
T 3huu_A 98 IEHLLNE---FKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHH---TTCCEEEESCC
T ss_pred HHHHHHH---cCCCEEEECCC
Confidence 5566653 35788777543
No 273
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=40.79 E-value=60 Score=28.27 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=48.8
Q ss_pred CccEEEE-eCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 113 RVNLIMT-DYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 113 ~~DlVll-D~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+|.|++ |-..--.. --+.+++.|.. .+..||.+-.. +.+...+++++|+|-.+...++++++..++..+-
T Consensus 177 L~D~vLIKdNHi~~~G~i~~Av~~ar~~-~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~ 249 (300)
T 3l0g_A 177 LCDGVLIKDNHIASCGSITLAIQRLRKN-LKNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIVN 249 (300)
T ss_dssp TTSCEEECHHHHHHHSCHHHHHHHHHHH-SSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred CcceEEEcHhHHHHhCCHHHHHHHHHHh-CCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhc
Confidence 3566666 32211111 23566777744 35678877554 3688899999999999999999999999887653
No 274
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=40.66 E-value=1.3e+02 Score=23.45 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=52.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|.-+|-++......+..+...|+ .+. ...++.+.+..+.. .....||+|++|...+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~------------------~~~~~fD~v~~d~~~~ 144 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIEN------------------EKYEPFDFIFIDADKQ 144 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH------------------TTCCCCSEEEECSCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh------------------cCCCCcCEEEEcCCcH
Confidence 45899999999999999999987775 243 46788777665410 0125699999996532
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEec
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa 150 (241)
.-..+++.+...-.+.- ++++..
T Consensus 145 --~~~~~l~~~~~~L~pgG-~lv~~~ 167 (223)
T 3duw_A 145 --NNPAYFEWALKLSRPGT-VIIGDN 167 (223)
T ss_dssp --GHHHHHHHHHHTCCTTC-EEEEES
T ss_pred --HHHHHHHHHHHhcCCCc-EEEEeC
Confidence 23455555553332343 444543
No 275
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=40.53 E-value=1.5e+02 Score=27.08 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCcEE-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC---CCCCHHHHHHHHhh
Q 026247 62 KILENLLRVSSYQV-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM---PGMTGYDLLKRLKV 137 (241)
Q Consensus 62 ~~l~~~L~~~g~~V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m---p~~~G~el~~~lr~ 137 (241)
..+.+..++.|..+ ..++|.+|+...+. ..+|+|=+...- ...| ++.+.+|..
T Consensus 147 ~~l~~~a~~lgm~~LvEvh~~eE~~~A~~----------------------lga~iIGinnr~L~t~~~d-l~~~~~L~~ 203 (452)
T 1pii_A 147 RQLAAVAHSLEMGVLTEVSNEEEQERAIA----------------------LGAKVVGINNRDLRDLSID-LNRTRELAP 203 (452)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHHHHH----------------------TTCSEEEEESEETTTTEEC-THHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHH----------------------CCCCEEEEeCCCCCCCCCC-HHHHHHHHH
Confidence 33444455689876 57999999987762 347777765432 1122 455555543
Q ss_pred cCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC-----CCChHHHHHHHHHHhcCCCCCC
Q 026247 138 SSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK-----PVRLSDLEKLQPRLLKSPNRSC 193 (241)
Q Consensus 138 ~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K-----P~~~~~L~~~i~~~l~~~~~~~ 193 (241)
.-..++++|.=|+-...+++.++.+. ++++|+- +-+ ....++.++.+..-.|
T Consensus 204 ~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d---~~~~~~~l~~~~~KIC 260 (452)
T 1pii_A 204 KLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDD---LHAAVRRVLLGENKVC 260 (452)
T ss_dssp HHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSC---HHHHHHHHHHCSCEEC
T ss_pred hCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcC---HHHHHHHHHHHhcccc
Confidence 32246778888888899999999999 9999764 433 3445555554433333
No 276
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=40.32 E-value=1.4e+02 Score=24.03 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=43.6
Q ss_pred CCcc-EEEEeCCCCC---CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc---CCcceEe------CCCChHHH
Q 026247 112 SRVN-LIMTDYCMPG---MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE---GAEEFLL------KPVRLSDL 178 (241)
Q Consensus 112 ~~~D-lVllD~~mp~---~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~---Ga~dyL~------KP~~~~~L 178 (241)
..+| +++++..-.+ .-.++++++++.. ..+|||+-.+-...+.+.++++. |+++++. .|++..++
T Consensus 158 ~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~--~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~ 235 (244)
T 1vzw_A 158 EGCARYVVTDIAKDGTLQGPNLELLKNVCAA--TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEA 235 (244)
T ss_dssp TTCCCEEEEEC-------CCCHHHHHHHHHT--CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHH
T ss_pred CCCCEEEEeccCcccccCCCCHHHHHHHHHh--cCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHH
Confidence 3466 4556654221 1247788888843 36899988887778999999999 9998754 35554444
Q ss_pred HH
Q 026247 179 EK 180 (241)
Q Consensus 179 ~~ 180 (241)
..
T Consensus 236 ~~ 237 (244)
T 1vzw_A 236 LE 237 (244)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 277
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=40.24 E-value=1.7e+02 Score=24.78 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHH
Q 026247 142 DVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRL 185 (241)
Q Consensus 142 ~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~ 185 (241)
++-+|+++.. ...+....|+++|..=|+-||+ +.++...++..+
T Consensus 65 ~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 65 DIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp CCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred CCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3444444333 3356677888888888888885 345554444433
No 278
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=40.20 E-value=1.1e+02 Score=22.72 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=46.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|.-+|-++......+..+...|+ .+. ...+..+.+..+.. ....||+|++|.-..
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------------------~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 67 MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE-------------------EKLQFDLVLLDPPYA 127 (187)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH-------------------TTCCEEEEEECCCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh-------------------cCCCCCEEEECCCCC
Confidence 35899999999999999888877664 243 45677665543310 246799999985433
Q ss_pred CCCHHHHHHHH
Q 026247 125 GMTGYDLLKRL 135 (241)
Q Consensus 125 ~~~G~el~~~l 135 (241)
..+...+++.+
T Consensus 128 ~~~~~~~~~~l 138 (187)
T 2fhp_A 128 KQEIVSQLEKM 138 (187)
T ss_dssp GCCHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 34455666666
No 279
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=40.20 E-value=46 Score=26.11 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=28.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCH---HHHHHHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSG---DKALEYL 88 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~---~eal~~l 88 (241)
++|+|||.-......+.+.|+..|+.+..+.+. ++..+.+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l 43 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRL 43 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHh
Confidence 379999965556677788888899988776654 4444444
No 280
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=40.16 E-value=1e+02 Score=22.64 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=47.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.++|.||-|.. . ..-|+-.|+++..+.+.+++.+.++.+. .+ .+.+|+++-.+-..-
T Consensus 2 ~mKiaVIGD~D-t----v~GFrLaGie~~~v~~~ee~~~~~~~l~-----------------~~-digIIlIte~ia~~i 58 (115)
T 3aon_B 2 TYKIGVVGDKD-S----VSPFRLFGFDVQHGTTKTEIRKTIDEMA-----------------KN-EYGVIYITEQCANLV 58 (115)
T ss_dssp EEEEEEESCHH-H----HGGGGGGTCEEECCCSHHHHHHHHHHHH-----------------HT-TEEEEEEEHHHHTTC
T ss_pred ceEEEEEECHH-H----HHHHHHcCCeEEEeCCHHHHHHHHHHHH-----------------hc-CceEEEEeHHHHHHh
Confidence 36888998832 2 2335567888888889888887774431 23 799999987665544
Q ss_pred HHHHHHHHhhcCCCCCcEEEE
Q 026247 128 GYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~l 148 (241)
.- .+++++. ...|+|+.
T Consensus 59 ~~-~i~~~~~---~~~P~Ive 75 (115)
T 3aon_B 59 PE-TIERYKG---QLTPAIIL 75 (115)
T ss_dssp HH-HHHHHHT---SSSCEEEE
T ss_pred HH-HHHHHhC---CCCCEEEE
Confidence 43 4444552 34676554
No 281
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=40.04 E-value=1.6e+02 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce-EeCCC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF-LLKPV 173 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy-L~KP~ 173 (241)
.+.++..++.. .++|||+--+-.+..++.+++.+||+.. +-.+|
T Consensus 346 ~~~~~~~~~~~--~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 346 AVYKVAEYARR--FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHHHHHHGG--GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHhh--CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 35566666532 3689998888778899999999999876 34444
No 282
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=39.96 E-value=1.8e+02 Score=25.07 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=44.4
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
..+.+.+++.+.+. ...|+|.+|- |+--++.+.++.. .+. ..|..|+--+.+
T Consensus 214 VEvdtlde~~eAl~----------------------aGaD~I~LDn----~~~~~l~~av~~i-~~~-v~ieaSGGI~~~ 265 (298)
T 3gnn_A 214 IEVETLDQLRTALA----------------------HGARSVLLDN----FTLDMMRDAVRVT-EGR-AVLEVSGGVNFD 265 (298)
T ss_dssp EEESSHHHHHHHHH----------------------TTCEEEEEES----CCHHHHHHHHHHH-TTS-EEEEEESSCSTT
T ss_pred EEeCCHHHHHHHHH----------------------cCCCEEEECC----CCHHHHHHHHHHh-CCC-CeEEEEcCCCHH
Confidence 45899999988872 3589999996 3433443333322 223 355678888888
Q ss_pred HHHHHHHcCCcce
Q 026247 156 RVTMCLEEGAEEF 168 (241)
Q Consensus 156 ~~~~a~~~Ga~dy 168 (241)
.+.+..+.|+|.|
T Consensus 266 ~i~~~a~tGVD~i 278 (298)
T 3gnn_A 266 TVRAIAETGVDRI 278 (298)
T ss_dssp THHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 8988999999644
No 283
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=39.87 E-value=1.5e+02 Score=24.64 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=44.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-----cEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS-----YQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g-----~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|..||=++......++.+...+ -.+. ...++.+.+.. ....||+|++|.
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----------------------~~~~fD~Ii~d~ 159 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----------------------VTNTYDVIIVDS 159 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----------------------CCSCEEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh----------------------CCCCceEEEEcC
Confidence 4589999999999998888876431 1232 45677665433 245799999998
Q ss_pred CCCCCCH-----HHHHHHHhh
Q 026247 122 CMPGMTG-----YDLLKRLKV 137 (241)
Q Consensus 122 ~mp~~~G-----~el~~~lr~ 137 (241)
..|.... .++++.++.
T Consensus 160 ~~~~~~~~~l~~~~~l~~~~~ 180 (283)
T 2i7c_A 160 SDPIGPAETLFNQNFYEKIYN 180 (283)
T ss_dssp CCTTTGGGGGSSHHHHHHHHH
T ss_pred CCCCCcchhhhHHHHHHHHHH
Confidence 6554221 356666653
No 284
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=39.72 E-value=27 Score=27.91 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=27.7
Q ss_pred ccccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECC
Q 026247 42 QQQQQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 42 ~~~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
......+++|||.--.-.+...+...|...|++|..+..
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R 53 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR 53 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence 344456779999999988888888888778999886543
No 285
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=39.62 E-value=75 Score=27.49 Aligned_cols=108 Identities=21% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHH-hhcCcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCc-cEEEEeCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLL-RVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRV-NLIMTDYC 122 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L-~~~g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-DlVllD~~ 122 (241)
...++|.||---..-+..+..+. ...++++.. ++...+..+.+. ....+ .-+..|
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a--------------------~~~g~~~~~~~~-- 78 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAAL--------------------DKYAIEAKDYND-- 78 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHH--------------------HHHTCCCEEESS--
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHH--------------------HHhCCCCeeeCC--
Confidence 34679999998877777776666 345788764 332222222221 00011 111222
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEec--CCChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSS--ENVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa--~~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
--++ +. . +++-+|+++. ....+....|+++|..=|+-||+ +.++..+++..+.
T Consensus 79 -----~~~l---l~-~--~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~ 135 (357)
T 3ec7_A 79 -----YHDL---IN-D--KDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQ 135 (357)
T ss_dssp -----HHHH---HH-C--TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred -----HHHH---hc-C--CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHH
Confidence 1122 22 2 2333444433 33466777889999888889997 5556555555443
No 286
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=39.48 E-value=1.1e+02 Score=26.05 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=58.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhh-cCcEEEEE-C-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRV-SSYQVTCV-D-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~-~g~~V~~~-~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
+.++||-||---..-+......+.. .+++++.+ + +.+.|.+... .....-+..|+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~---------------------~~g~~~~y~d~- 78 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMAD---------------------RFSVPHAFGSY- 78 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHH---------------------HHTCSEEESSH-
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---------------------HcCCCeeeCCH-
Confidence 3468999999877666554555554 46777643 3 3333433321 11111223332
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEecCC--ChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHH
Q 026247 123 MPGMTGYDLLKRLKVSSWKDVPVVVMSSEN--VPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRL 185 (241)
Q Consensus 123 mp~~~G~el~~~lr~~~~~~~pII~lsa~~--~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~ 185 (241)
-++ |. . +++-+|+++... ..+....|+++|..=|+-||+ +.++...++..+
T Consensus 79 ------~el---l~-~--~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 133 (350)
T 4had_A 79 ------EEM---LA-S--DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAAR 133 (350)
T ss_dssp ------HHH---HH-C--SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHH
T ss_pred ------HHH---hc-C--CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHH
Confidence 122 22 2 344455554433 467788999999999999998 445555544443
No 287
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=39.32 E-value=1.4e+02 Score=23.62 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCCcc-EEEEeCCCCCC---CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVN-LIMTDYCMPGM---TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~D-lVllD~~mp~~---~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
....| +.+.|...... ..+++++.++.. ..+|+++.....+.+...+++++|++.+..
T Consensus 44 ~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~--~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 44 EEGADEIAILDITAAPEGRATFIDSVKRVAEA--VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp HTTCSCEEEEECCCCTTTHHHHHHHHHHHHHH--CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HcCCCEEEEEeCCccccCCcccHHHHHHHHHh--cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 34467 44555443221 245677777743 368998877777788889999999987764
No 288
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=39.11 E-value=1.2e+02 Score=23.56 Aligned_cols=67 Identities=9% Similarity=-0.057 Sum_probs=45.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc-EEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY-QVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~-~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
.+|.-||-++......+..+...|+ .+.. ..+..+.+.. ....||+|++|.-....
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~----------------------~~~~fD~V~~~~p~~~~ 135 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ----------------------KGTPHNIVFVDPPFRRG 135 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS----------------------CCCCEEEEEECCSSSTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh----------------------cCCCCCEEEECCCCCCC
Confidence 3899999999999999988887775 4443 4555443211 23579999999653334
Q ss_pred CHHHHHHHHhh
Q 026247 127 TGYDLLKRLKV 137 (241)
Q Consensus 127 ~G~el~~~lr~ 137 (241)
+..++++.+..
T Consensus 136 ~~~~~l~~l~~ 146 (202)
T 2fpo_A 136 LLEETINLLED 146 (202)
T ss_dssp THHHHHHHHHH
T ss_pred cHHHHHHHHHh
Confidence 44556666653
No 289
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=39.00 E-value=66 Score=23.19 Aligned_cols=40 Identities=8% Similarity=-0.095 Sum_probs=30.3
Q ss_pred cEEEEEeCCHHH--HHHHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 49 FHVLAVDDSLID--RKILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 49 ~~VLIVDDd~~~--~~~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
..|+++...... .......|...||+|....-|-.++..-
T Consensus 72 ~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~W~~~ 113 (124)
T 3flh_A 72 KTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGM 113 (124)
T ss_dssp SEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHHHHHT
T ss_pred CeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHHHHHc
Confidence 367777766554 5677788888999988888888887653
No 290
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=38.96 E-value=41 Score=26.78 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=28.0
Q ss_pred cccCCccEEEEEeCCH--HHHHHHHHHHhhcCcEEEEEC
Q 026247 43 QQQQETFHVLAVDDSL--IDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 43 ~~~~~~~~VLIVDDd~--~~~~~l~~~L~~~g~~V~~~~ 79 (241)
.+.+..++|.|--|+. ...+.+.+.|+..||+|..++
T Consensus 16 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G 54 (166)
T 3s5p_A 16 TQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLG 54 (166)
T ss_dssp ---CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcC
Confidence 3445568999999997 567789999999999998654
No 291
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=38.84 E-value=69 Score=25.83 Aligned_cols=54 Identities=9% Similarity=-0.081 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
-+|..||-++......++.....+..+. ...++.+.+..+ ....||.|+.|.-.
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~---------------------~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL---------------------PDGHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS---------------------CTTCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc---------------------cccCCceEEEeeee
Confidence 3789999999999999998887787665 456776665443 56679999998643
No 292
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=38.81 E-value=1.8e+02 Score=24.73 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=42.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.|++++--. .+.-|..+++.+- ..+|||+. .. ....+.+..|..+|+.. +.++|.+.+.+++.
T Consensus 316 ad~~v~ps~-~E~~~~~~lEAma----~G~PvI~~-~~---~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 316 SDVILQMSI-REGFGLTVTEAMW----KGKPVIGR-AV---GGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp CSEEEECCS-SCSSCHHHHHHHH----TTCCEEEE-SC---HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred CCEEEECCC-cCCCccHHHHHHH----cCCCEEEc-cC---CCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 567666433 2344666766665 46788754 22 33455667788899986 89999999998875
No 293
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=38.53 E-value=1.1e+02 Score=24.49 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=46.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccC--CCccEEEEeCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEE--SRVNLIMTDYC 122 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DlVllD~~ 122 (241)
..+|..+|-++......++.+...|+ .+. ...++.+.+..+.. .. ..||+|++|..
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~-------------------~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-------------------GKPLPEFDLIFIDAD 157 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT-------------------SSSCCCEEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh-------------------cCCCCCcCEEEECCC
Confidence 45899999999999999988877775 244 46777776655410 12 57999999964
Q ss_pred CCCCCHHHHHHHHh
Q 026247 123 MPGMTGYDLLKRLK 136 (241)
Q Consensus 123 mp~~~G~el~~~lr 136 (241)
. .+-..+++.+.
T Consensus 158 ~--~~~~~~l~~~~ 169 (232)
T 3cbg_A 158 K--RNYPRYYEIGL 169 (232)
T ss_dssp G--GGHHHHHHHHH
T ss_pred H--HHHHHHHHHHH
Confidence 2 22334455544
No 294
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=38.48 E-value=1e+02 Score=21.64 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=36.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHh
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLG 89 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~ 89 (241)
+-|||+..+....+..+.+-+....+..++.+.++...++.
T Consensus 3 lyvliisndkklieearkmaekanlelrtvktedelkkyle 43 (110)
T 2kpo_A 3 LYVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLE 43 (110)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHH
T ss_pred EEEEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHHH
Confidence 35899999999888888999888999999999999999983
No 295
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=38.41 E-value=2.2e+02 Score=25.53 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=64.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE---EEEECC--HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ---VTCVDS--GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~---V~~~~~--~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
+..+++|+..+...+..+.+.+...|.. |+..+. .++..+++ ...|+.++-.
T Consensus 405 ~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~-----------------------~~adv~v~ps 461 (568)
T 2vsy_A 405 PDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARY-----------------------RHADLFLDTH 461 (568)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHG-----------------------GGCSEEECCS
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHH-----------------------hcCCEEeeCC
Confidence 4567777773334456677777766653 665543 34555655 2357766543
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHH--HHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSR--VTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~--~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.. .-|..+++.+- ..+|||++........ .......|..+++.. +.+++...+.+++.
T Consensus 462 ~~--~~g~~~lEAma----~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 462 PY--NAHTTASDALW----TGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA--DDAAFVAKAVALAS 521 (568)
T ss_dssp SS--CCSHHHHHHHH----TTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS--SHHHHHHHHHHHHH
T ss_pred CC--CCcHHHHHHHh----CCCCEEeccCCCchHHHHHHHHHHCCChhhhcC--CHHHHHHHHHHHhc
Confidence 33 45677777665 4689986433211111 112234577777754 78888888888774
No 296
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=38.34 E-value=64 Score=28.69 Aligned_cols=58 Identities=9% Similarity=0.173 Sum_probs=39.3
Q ss_pred CCCccEEEEeCCCCCC-CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGM-TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~-~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|..-... .-++.+++++.. ++++|||+-+ -...+....+.++|+|....
T Consensus 118 eaGvd~I~idta~G~~~~~~~~I~~ik~~-~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 118 EAGVDVLLIDSSHGHSEGVLQRIRETRAA-YPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHHH-CTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred hCCCCEEEEeCCCCCCHHHHHHHHHHHHh-cCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 4568999998643222 235667788753 3678876532 24577888899999987776
No 297
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=38.08 E-value=94 Score=21.19 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=28.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-cEEEEECCHHHHHHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSS-YQVTCVDSGDKALEYL 88 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g-~~V~~~~~~~eal~~l 88 (241)
+.+|+|+-- -.+...+...|...| ++|..+....+.++.+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 468999988 667777777777788 8888766555555554
No 298
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=37.98 E-value=1.2e+02 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=30.8
Q ss_pred CCCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 141 KDVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 141 ~~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
+++-+|+++.. ...+....|+++|..=|+-||+ +.++..+++..+.
T Consensus 87 ~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 87 ENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp TTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 34445555443 3466788899999999999997 5566666555544
No 299
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.84 E-value=1.5e+02 Score=24.08 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=43.8
Q ss_pred cEEEEEe---CCHHHH---HHHHHHHhhcCcEEEEEC-----CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 49 FHVLAVD---DSLIDR---KILENLLRVSSYQVTCVD-----SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 49 ~~VLIVD---Dd~~~~---~~l~~~L~~~g~~V~~~~-----~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.+|-++- +++... ..+++.++..||.+..+. +.+...+.+..+ ....+|.|
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l------------------~~~~vdgi 65 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESA------------------LATYPSGI 65 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHH------------------HHTCCSEE
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHH------------------HHcCCCEE
Confidence 3454442 345544 345566677899987654 334333333221 34568988
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecC
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~ 151 (241)
|+--.-+. .....++.++. ..+|+|++...
T Consensus 66 ii~~~~~~-~~~~~~~~~~~---~giPvV~~~~~ 95 (297)
T 3rot_A 66 ATTIPSDT-AFSKSLQRANK---LNIPVIAVDTR 95 (297)
T ss_dssp EECCCCSS-TTHHHHHHHHH---HTCCEEEESCC
T ss_pred EEeCCCHH-HHHHHHHHHHH---CCCCEEEEcCC
Confidence 87432222 11445666653 36788887543
No 300
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=37.53 E-value=83 Score=24.53 Aligned_cols=67 Identities=12% Similarity=-0.021 Sum_probs=44.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc---EEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCC-ccEEEEeCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY---QVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESR-VNLIMTDYCM 123 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~---~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~DlVllD~~m 123 (241)
.+|.-||-++......+..+...|+ .+.. ..+..+.+..+ .... ||+|++|.-.
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~---------------------~~~~~fD~I~~~~~~ 135 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP---------------------QNQPHFDVVFLDPPF 135 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC---------------------CSSCCEEEEEECCCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh---------------------ccCCCCCEEEECCCC
Confidence 4799999999999999888887775 4543 44554432111 2456 9999998654
Q ss_pred CCCCHHHHHHHHh
Q 026247 124 PGMTGYDLLKRLK 136 (241)
Q Consensus 124 p~~~G~el~~~lr 136 (241)
...+..++++.+.
T Consensus 136 ~~~~~~~~l~~~~ 148 (201)
T 2ift_A 136 HFNLAEQAISLLC 148 (201)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCccHHHHHHHHH
Confidence 3333445666663
No 301
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=37.52 E-value=2.1e+02 Score=25.26 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=57.8
Q ss_pred HHHHHHHhhcC--cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC-----CCCCHHHHHHH
Q 026247 62 KILENLLRVSS--YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM-----PGMTGYDLLKR 134 (241)
Q Consensus 62 ~~l~~~L~~~g--~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m-----p~~~G~el~~~ 134 (241)
+.++.+-+..+ +-+..+.+.++|.... +...|.|++.-.- .+...++++..
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~----------------------~~GaD~I~vsn~GG~~~d~~~~~~~~L~~ 264 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAM----------------------KHNVQGIVVSNHGGRQLDEVSASIDALRE 264 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHH----------------------HTTCSEEEECCGGGTSSCSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHH----------------------HcCCCEEEEeCCCCCccCCCccHHHHHHH
Confidence 33444444444 3444577888887665 4467888774321 02334677777
Q ss_pred HhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 135 LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 135 lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
++..-...+|||+-.+-.+..++.+++.+||+....
T Consensus 265 i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~i 300 (352)
T 3sgz_A 265 VVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFL 300 (352)
T ss_dssp HHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 764333479999999988999999999999998744
No 302
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=37.47 E-value=72 Score=26.56 Aligned_cols=33 Identities=15% Similarity=-0.052 Sum_probs=23.4
Q ss_pred ccEEEEEeCC--------------------HHHHHHHHHHHhhcCcEEEEECC
Q 026247 48 TFHVLAVDDS--------------------LIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 48 ~~~VLIVDDd--------------------~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
++|||++-.. ......+.+.|...|++|+.+..
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~ 55 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGA 55 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4789999876 22444566777778999987654
No 303
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=37.23 E-value=1.1e+02 Score=24.90 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=7.3
Q ss_pred HHHHHhhcCcEEEE
Q 026247 64 LENLLRVSSYQVTC 77 (241)
Q Consensus 64 l~~~L~~~g~~V~~ 77 (241)
+.+.+...||.+..
T Consensus 32 i~~~a~~~g~~~~~ 45 (294)
T 3qk7_A 32 IGIELGKRGLDLLL 45 (294)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCEEEE
Confidence 34444556666554
No 304
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=37.20 E-value=1.2e+02 Score=26.00 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=37.3
Q ss_pred CCCccEEEEeCCC--------CCCCHHHHHHHHhhcCCCCCcEEEEecCC------------C-----hHHHHHHHHcCC
Q 026247 111 ESRVNLIMTDYCM--------PGMTGYDLLKRLKVSSWKDVPVVVMSSEN------------V-----PSRVTMCLEEGA 165 (241)
Q Consensus 111 ~~~~DlVllD~~m--------p~~~G~el~~~lr~~~~~~~pII~lsa~~------------~-----~~~~~~a~~~Ga 165 (241)
....+++|+.-.. -++..+..+++. .+++||++-++|. . ......|..+||
T Consensus 160 ~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~----~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA 235 (285)
T 3sz8_A 160 VGNDRVMLCERGSSFGYDNLVVDMLGFRQMAET----TGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGI 235 (285)
T ss_dssp TTCCCEEEEECCEECSSSCEECCTTHHHHHHHH----TTSCCEEEETTTTCC---------------HHHHHHHHHHHCC
T ss_pred cCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHh----CCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCC
Confidence 3456888886432 245566554432 2358998877776 2 345667899999
Q ss_pred cc-eEeCCCC
Q 026247 166 EE-FLLKPVR 174 (241)
Q Consensus 166 ~d-yL~KP~~ 174 (241)
++ +|-|-++
T Consensus 236 ~gl~IE~H~~ 245 (285)
T 3sz8_A 236 AGLFLEAHPD 245 (285)
T ss_dssp SEEEEEEESC
T ss_pred CEEEEEeccC
Confidence 97 4655444
No 305
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=37.11 E-value=1.8e+02 Score=24.22 Aligned_cols=86 Identities=10% Similarity=-0.050 Sum_probs=49.7
Q ss_pred CccEEEEE-e-CCHHHH---HHHHHHHhhcCcEEEEE------CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 47 ETFHVLAV-D-DSLIDR---KILENLLRVSSYQVTCV------DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 47 ~~~~VLIV-D-Dd~~~~---~~l~~~L~~~g~~V~~~------~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
...+|.++ + ++.... ..+.+.++..|..+... .+....+..+ ....+|
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l---------------------~~~~~d 206 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVA---------------------MSFNPD 206 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHH---------------------HHTCCS
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHH---------------------HhcCCC
Confidence 34578777 3 444433 45666777788876532 3445556655 345799
Q ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHH
Q 026247 116 LIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSR 156 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~ 156 (241)
+|++... +.+...+++.++... ..+|++..........
T Consensus 207 ~v~~~~~--~~~a~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 244 (366)
T 3td9_A 207 AIYITGY--YPEIALISRQARQLG-FTGYILAGDGADAPEL 244 (366)
T ss_dssp EEEECSC--HHHHHHHHHHHHHTT-CCSEEEECGGGCSTHH
T ss_pred EEEEccc--hhHHHHHHHHHHHcC-CCceEEeeCCcCCHHH
Confidence 9998432 334556777777443 3577765544444333
No 306
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=36.94 E-value=2e+02 Score=24.64 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=56.2
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 50 HVLAVDDSLID----RKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 50 ~VLIVDDd~~~----~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.|+|-|.+-.. ...++.+-+..+. -...+.+.+++.+.+ ....|.|.+|-
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~----------------------~aGaD~I~ld~-- 236 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDAL----------------------KAGADIIMLDN-- 236 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHH----------------------HTTCSEEEESS--
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH----------------------HcCCCEEEECC--
Confidence 36666655543 3444444444444 344688888888776 23489999995
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
++--+ ++.+.......++| ..|+--+.+.+....+.|+|.+
T Consensus 237 --~~~e~-l~~~v~~~~~~~~I-~ASGGIt~~~i~~~a~~GvD~i 277 (296)
T 1qap_A 237 --FNTDQ-MREAVKRVNGQARL-EVSGNVTAETLREFAETGVDFI 277 (296)
T ss_dssp --CCHHH-HHHHHHTTCTTCCE-EECCCSCHHHHHHHHHTTCSEE
T ss_pred --CCHHH-HHHHHHHhCCCCeE-EEECCCCHHHHHHHHHcCCCEE
Confidence 34333 34444332235555 4566668899999999999644
No 307
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=36.85 E-value=1.1e+02 Score=21.49 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=36.5
Q ss_pred ccCCccEEEEEeCCHHHHHHHHHHHhhcCcEEE--EECCHHHHHHHHhh
Q 026247 44 QQQETFHVLAVDDSLIDRKILENLLRVSSYQVT--CVDSGDKALEYLGL 90 (241)
Q Consensus 44 ~~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~--~~~~~~eal~~l~~ 90 (241)
...++++|||+-.+........++-+....+|. -+.+.++|..++..
T Consensus 47 kesqnikvlilvsndeeldkakelaqkmeidvrtrkvtspdeakrwike 95 (110)
T 2kpo_A 47 KESQNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIKE 95 (110)
T ss_dssp SSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHH
T ss_pred hhccCeEEEEEEcChHHHHHHHHHHHhhceeeeeeecCChHHHHHHHHH
Confidence 345678999988888777777777777766665 58999999999854
No 308
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=36.71 E-value=59 Score=28.54 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
-+.++..|.. .|..+|++-.. +.+...+++++|++......++++++..++..+
T Consensus 219 ~~Av~~ar~~-~p~~kIeVEVd--tldea~eAl~aGaD~I~LDn~~~~~l~~av~~l 272 (320)
T 3paj_A 219 RQAISTAKQL-NPGKPVEVETE--TLAELEEAISAGADIIMLDNFSLEMMREAVKIN 272 (320)
T ss_dssp HHHHHHHHHH-STTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCeEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3566666643 35677776544 357788899999999999999999998888664
No 309
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=36.40 E-value=1.1e+02 Score=28.13 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=41.7
Q ss_pred CCCccEEEEeCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|.......+ .+++++++... +++||++-+. ...+....+.++|++.+..
T Consensus 265 ~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~-~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 265 QAGVDVIVLDSSQGNSVYQIAMVHYIKQKY-PHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HTTCSEEEECCSCCCSHHHHHHHHHHHHHC-TTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred HcCCCEEEeeccCCcchhHHHHHHHHHHhC-CCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 456899999887643333 58889998543 5788876332 4577888999999987755
No 310
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=36.20 E-value=1.5e+02 Score=25.26 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=38.6
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.+..+|+|.+....| .+++++++.. .++++... ........+.+.|+|.++.-
T Consensus 93 ~~~g~d~V~~~~g~p----~~~~~~l~~~---gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 93 IEAGIRVVETAGNDP----GEHIAEFRRH---GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp HHTTCCEEEEEESCC----HHHHHHHHHT---TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred HhcCCCEEEEcCCCc----HHHHHHHHHc---CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 455789999987766 5778888852 56776433 34667778899999988873
No 311
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=36.17 E-value=34 Score=29.34 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=58.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
.++|.|+-........+.+.|+..|+++.......+ .+ ..+|+|++= |.|
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~---~~-----------------------~~~DlvIvl----GGD 78 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSE---EL-----------------------ENFDFIVSV----GGD 78 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCG---GG-----------------------GGSSEEEEE----ECH
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccc---cc-----------------------CCCCEEEEE----CCC
Confidence 468888843211166788889889999876543221 11 247887762 667
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
|- +++..+..... +||+-+.. |=.+||. ++..+++...+.+++.
T Consensus 79 GT-~L~aa~~~~~~-~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 79 GT-ILRILQKLKRC-PPIFGINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp HH-HHHHHTTCSSC-CCEEEEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred HH-HHHHHHHhCCC-CcEEEECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 74 33444432223 89998864 5566776 4666777777777764
No 312
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=36.02 E-value=1.2e+02 Score=21.81 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=28.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
...|+|++-.. .+..-..++..+|... ...||+.+.. ........+.|++..+ -|
T Consensus 69 ~~~d~vi~~~~-~~~~n~~~~~~a~~~~--~~~iia~~~~--~~~~~~l~~~G~~~vi-~p 123 (141)
T 3llv_A 69 EGVSAVLITGS-DDEFNLKILKALRSVS--DVYAIVRVSS--PKKKEEFEEAGANLVV-LV 123 (141)
T ss_dssp TTCSEEEECCS-CHHHHHHHHHHHHHHC--CCCEEEEESC--GGGHHHHHHTTCSEEE-EH
T ss_pred ccCCEEEEecC-CHHHHHHHHHHHHHhC--CceEEEEEcC--hhHHHHHHHcCCCEEE-CH
Confidence 35788887543 1111233444555332 4456555443 4455567788986444 44
No 313
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=35.93 E-value=79 Score=27.12 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
+.++..|....+..+|. ++.+ +.+...++..+|+|.....++++..++..+..+
T Consensus 184 ~av~~ar~~~~~~~~Ig-Vev~-t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVE-VEVR-SLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHSCTTSCEE-EEES-SHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEE-EEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34566664432334444 4543 477888999999988889999999988877654
No 314
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=35.92 E-value=2.5e+02 Score=27.60 Aligned_cols=64 Identities=8% Similarity=0.155 Sum_probs=44.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
-|++++-- ..+.-|+.+++.+- ..+|||+. ..+ -..+.+..|.++++..|.+.+++.+.+.+++
T Consensus 665 aDvfV~PS-~~EgfglvllEAMA----~G~PVIas-d~G---G~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL 728 (816)
T 3s28_A 665 KGAFVQPA-LYEAFGLTVVEAMT----CGLPTFAT-CKG---GPAEIIVHGKSGFHIDPYHGDQAADTLADFF 728 (816)
T ss_dssp TCEEEECC-SCBSSCHHHHHHHH----TTCCEEEE-SSB---THHHHCCBTTTBEEECTTSHHHHHHHHHHHH
T ss_pred CeEEEECC-CccCccHHHHHHHH----cCCCEEEe-CCC---ChHHHHccCCcEEEeCCCCHHHHHHHHHHHH
Confidence 46666533 23455777777765 46898764 332 2334457789999999999999999987665
No 315
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=35.77 E-value=27 Score=27.36 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=25.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEECCH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
.|+|+|-...+...+.+.|+..|+.+..+...
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNT 33 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETT
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECC
Confidence 38999987777778889999999988776543
No 316
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.72 E-value=1.6e+02 Score=23.27 Aligned_cols=119 Identities=11% Similarity=0.141 Sum_probs=67.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe------
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD------ 120 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD------ 120 (241)
..+|+++-..+.......+++...+.++. ...+.++++...+.+ ...+|+||.-
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~-------------------~~~~dVIISRGgta~~ 64 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL-------------------QDEVDAIISRGATSDY 64 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH-------------------TTTCSEEEEEHHHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh-------------------cCCCeEEEECChHHHH
Confidence 45889998889988899888887776664 467888888877321 2446666652
Q ss_pred ----CCCC----CCCHHHHHHHHhhcCCCCCcEEEEecCC---ChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhc
Q 026247 121 ----YCMP----GMTGYDLLKRLKVSSWKDVPVVVMSSEN---VPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 121 ----~~mp----~~~G~el~~~lr~~~~~~~pII~lsa~~---~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
+..| ..+|+++++.|.......-+|-+++-.. ........++....-|. ..+.+++...+.++..
T Consensus 65 lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~--~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 65 IKKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFL--FSSEDEITTLISKVKT 140 (196)
T ss_dssp HHTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEE--ECSGGGHHHHHHHHHH
T ss_pred HHHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEE--eCCHHHHHHHHHHHHH
Confidence 1223 2566666666653211112333332221 22334444444333333 2345666777776654
No 317
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=35.72 E-value=54 Score=27.54 Aligned_cols=62 Identities=5% Similarity=0.075 Sum_probs=38.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCC--C-h-HHHHHHHHcCCcceEeCCCC--hHHHHHHHHHH
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSEN--V-P-SRVTMCLEEGAEEFLLKPVR--LSDLEKLQPRL 185 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~--~-~-~~~~~a~~~Ga~dyL~KP~~--~~~L~~~i~~~ 185 (241)
.|++++-- . |..+++.+. ..+|+|+..... . . .......+.|. +++..|-+ .++|.+.+.++
T Consensus 255 ad~~v~~s----g-~~~~~EAma----~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 255 ADVVVCRS----G-ALTVSEIAA----AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CSEEEECC----C-HHHHHHHHH----HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCEEEECC----c-hHHHHHHHH----hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 46666642 2 677777765 367988664322 1 1 11334556777 99998866 88888877654
No 318
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=35.68 E-value=78 Score=25.60 Aligned_cols=49 Identities=6% Similarity=0.096 Sum_probs=29.7
Q ss_pred cCCCccEEEEeCCC-----CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHH
Q 026247 110 EESRVNLIMTDYCM-----PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMC 160 (241)
Q Consensus 110 ~~~~~DlVllD~~m-----p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a 160 (241)
.+..||+||+|--. .-.+--++++.|.. ..... -|++|+........+.
T Consensus 117 ~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~-~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 117 ADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQ-TVIITGRGCHRDILDL 170 (196)
T ss_dssp TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTC-EEEEECSSCCHHHHHH
T ss_pred hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCC-EEEEECCCCcHHHHHh
Confidence 34679999999642 22445567777763 33344 4557776665555433
No 319
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=35.61 E-value=68 Score=28.94 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCCccEEEEeCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|++|.......+ .+++++++.. + .+|||+= .-...+....+.++|+|....
T Consensus 154 eaGvdvIvldta~G~~~~~~e~I~~ik~~-~-~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 154 EAGVDVIVLDSAHGHSLNIIRTLKEIKSK-M-NIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp HHTCSEEEECCSCCSBHHHHHHHHHHHTT-C-CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HcCCCEEEEeCCCCCcccHHHHHHHHHhc-C-CCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 446899999976432222 6788888843 2 6777752 224578888999999998876
No 320
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=35.52 E-value=86 Score=25.46 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=26.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
++|||.--.-.+...+...|...|++|+.+.
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~ 36 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFD 36 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEec
Confidence 4899999999999999888888899998754
No 321
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=35.35 E-value=57 Score=25.75 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhhcCCCCCcEEE--EecCCChHHHHHHHHcCCcceEeCCCCh-HHHHHHHHHH
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVV--MSSENVPSRVTMCLEEGAEEFLLKPVRL-SDLEKLQPRL 185 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~--lsa~~~~~~~~~a~~~Ga~dyL~KP~~~-~~L~~~i~~~ 185 (241)
..|+++++.+|.. .+++||.+ ++.+........+.++|++.++.-.... +.+...+..+
T Consensus 38 ~~g~~~i~~ir~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 38 REGVNAIKAIKEK-YPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAA 99 (211)
T ss_dssp HHTTHHHHHHHHH-CTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHh-CCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHH
Confidence 3578899999853 25678754 2333334448899999999887754433 3344444433
No 322
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=35.35 E-value=1.9e+02 Score=23.97 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=51.1
Q ss_pred EEEEEeCCH-HHHHHHHHHHhhcCcEEEE-------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 50 HVLAVDDSL-IDRKILENLLRVSSYQVTC-------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 50 ~VLIVDDd~-~~~~~l~~~L~~~g~~V~~-------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+++.+++. .-+.....+.+..|.++.. ..+....+..+ ....+|+|++-.
T Consensus 146 ~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i---------------------~~~~~d~v~~~~ 204 (353)
T 4gnr_A 146 VVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKM---------------------KGKDFDAIVVPG 204 (353)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHH---------------------HTSCCSEEECCS
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH---------------------HhcCCCEEEEec
Confidence 355556543 4444444455567776642 23556666666 567899998743
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHH
Q 026247 122 CMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCL 161 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~ 161 (241)
...++..+++.++... ...|++.............+.
T Consensus 205 --~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 241 (353)
T 4gnr_A 205 --YYNEAGKIVNQARGMG-IDKPIVGGDGFNGEEFVQQAT 241 (353)
T ss_dssp --CHHHHHHHHHHHHHTT-CCSCEEECGGGCSHHHHHHHC
T ss_pred --CcHHHHHHHHHHHHcC-CCCcEEEecccccchhhhhhh
Confidence 2345666777777543 456776666655555555443
No 323
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=35.23 E-value=2.5e+02 Score=25.26 Aligned_cols=33 Identities=21% Similarity=-0.001 Sum_probs=19.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCcEEEEEC
Q 026247 47 ETFHVLAVDDSLI---DRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 47 ~~~~VLIVDDd~~---~~~~l~~~L~~~g~~V~~~~ 79 (241)
.+.+|+++|-|.. ....+..+-...|+.+....
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~ 160 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 160 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecC
Confidence 3568999997743 33334444445677766653
No 324
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=34.89 E-value=2e+02 Score=24.10 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=40.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-----CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS-----SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~-----g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|..||=++......++.+... .-.+. ...++.+.+... ....||+|++|.
T Consensus 119 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~---------------------~~~~fDvIi~d~ 177 (304)
T 3bwc_A 119 VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT---------------------PDNTYDVVIIDT 177 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS---------------------CTTCEEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc---------------------cCCceeEEEECC
Confidence 458999999998888888776321 11232 456666544321 245799999998
Q ss_pred CCCCCCH-----HHHHHHHhh
Q 026247 122 CMPGMTG-----YDLLKRLKV 137 (241)
Q Consensus 122 ~mp~~~G-----~el~~~lr~ 137 (241)
..|.... .++++.++.
T Consensus 178 ~~~~~~~~~l~~~~~l~~~~~ 198 (304)
T 3bwc_A 178 TDPAGPASKLFGEAFYKDVLR 198 (304)
T ss_dssp C---------CCHHHHHHHHH
T ss_pred CCccccchhhhHHHHHHHHHH
Confidence 7654221 355666653
No 325
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=34.87 E-value=85 Score=25.28 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=40.3
Q ss_pred CCccE-EEEeCCCCCC---CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHc---CCcceEe
Q 026247 112 SRVNL-IMTDYCMPGM---TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEE---GAEEFLL 170 (241)
Q Consensus 112 ~~~Dl-VllD~~mp~~---~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~---Ga~dyL~ 170 (241)
..++. ++++..-.++ -.++++++++.. ..+|||+-..-...+.+.++++. |+++++.
T Consensus 161 ~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~--~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 161 EGCSRFVVTDITKDGTLGGPNLDLLAGVADR--TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp TTCCCEEEEETTTTTTTSCCCHHHHHHHHTT--CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCCCEEEEEecCCccccCCCCHHHHHHHHHh--CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 34664 4566544322 247788888742 47899988887778999999998 9997754
No 326
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=34.87 E-value=1e+02 Score=25.15 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=14.4
Q ss_pred CCHHHHH---HHHHHHhhcCcEEEEEC
Q 026247 56 DSLIDRK---ILENLLRVSSYQVTCVD 79 (241)
Q Consensus 56 Dd~~~~~---~l~~~L~~~g~~V~~~~ 79 (241)
+++.... .+.+.++..||.+..+.
T Consensus 23 ~~~f~~~~~~gi~~~a~~~g~~~~~~~ 49 (295)
T 3hcw_A 23 LNPFYINVLLGISETCNQHGYGTQTTV 49 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred cChHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 4555444 45555667788877654
No 327
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=34.75 E-value=95 Score=25.82 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=36.8
Q ss_pred cCCCccEEEEeCCCCCCC---HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 110 EESRVNLIMTDYCMPGMT---GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~---G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.+.-.|+|.+-... +++ -+++++++|. .++|+|+|+...+. +..|+|++|.-
T Consensus 30 ~~~GaD~IelG~S~-g~t~~~~~~~v~~ir~---~~~Pivl~~y~~n~------i~~gvDg~iip 84 (234)
T 2f6u_A 30 ADSGTDAVMISGTQ-NVTYEKARTLIEKVSQ---YGLPIVVEPSDPSN------VVYDVDYLFVP 84 (234)
T ss_dssp HTTTCSEEEECCCT-TCCHHHHHHHHHHHTT---SCCCEEECCSSCCC------CCCCSSEEEEE
T ss_pred HHcCCCEEEECCCC-CCCHHHHHHHHHHhcC---CCCCEEEecCCcch------hhcCCCEEEEc
Confidence 45668999998742 223 4567777763 58999999887321 27899999876
No 328
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=34.65 E-value=1.5e+02 Score=25.19 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=17.5
Q ss_pred hHHHHHHHHcCCcceEeCCC--ChHHHHHHHH
Q 026247 154 PSRVTMCLEEGAEEFLLKPV--RLSDLEKLQP 183 (241)
Q Consensus 154 ~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~ 183 (241)
.+....++++|..=|+-||+ +.++...++.
T Consensus 78 ~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~ 109 (344)
T 3ezy_A 78 SELVIACAKAKKHVFCEKPLSLNLADVDRMIE 109 (344)
T ss_dssp HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 44566677777777777774 4444444433
No 329
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=34.49 E-value=1.1e+02 Score=25.91 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.++++++|.. .++||++=.+-.+.+.+.++ .|||+.++=
T Consensus 191 ~~~v~~vr~~--~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKAR--TALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTT--CCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhh--cCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 4788888843 37898766666668888775 999999763
No 330
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=34.44 E-value=56 Score=26.35 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+++++++++.. ++||++..+-.+.+.+.+++++|++.++.
T Consensus 175 ~~~~i~~~~~~---~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 175 DVALIEALCKA---GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp CHHHHHHHHHT---TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 46778888742 68998887777799999999999998864
No 331
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=34.37 E-value=33 Score=30.42 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE------eC-CCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL------LK-PVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL------~K-P~~~~~L~~~i~~~l~~ 188 (241)
++++++++.. .+.+|||....-.+.+++.+++.+||+... .. |.-..++..-+.+++..
T Consensus 265 ~~~i~~v~~~-~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~ 330 (354)
T 4ef8_A 265 LANINAFYRR-CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAK 330 (354)
T ss_dssp HHHHHHHHHH-CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 6777888754 457999999888899999999999998653 34 66666777777777643
No 332
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=34.15 E-value=2.7e+02 Score=25.38 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=61.1
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhc-CcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVD----DSLIDRKILENLLRVS-SYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVD----Dd~~~~~~l~~~L~~~-g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..++++| ........++.+-+.. +..|. .+.+.++|..+. +.-.|.|.+-+
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~----------------------~aGaD~I~vg~ 299 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALA----------------------EAGADAVKVGI 299 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHH----------------------HTTCSEEEECS
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHH----------------------HcCCCEEEECC
Confidence 4566665 3344445555555444 43333 367777776665 34578888732
Q ss_pred CCCC------------CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 122 CMPG------------MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 122 ~mp~------------~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
. |+ ...++++..+... ....+|||+--+-....++.+++.+||+....
T Consensus 300 g-~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 300 G-PGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp S-CSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred C-CCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 1 11 2234555555532 22479999888888899999999999997754
No 333
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=34.09 E-value=83 Score=29.78 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=41.9
Q ss_pred cCCCccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE
Q 026247 110 EESRVNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
-+...|+|++|..--... -++++++||. .+++++||+ -.-...+.....+++|||...
T Consensus 290 v~AGvD~iviD~ahGhs~~v~~~i~~ik~-~~p~~~via-GNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 290 AEAGLDVVVLDSSQGNSVYQIEFIKWIKQ-TYPKIDVIA-GNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp HHTTCCEEEECCSCCCSHHHHHHHHHHHH-HCTTSEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred HhcCCcEEEEeccccccHHHHHHHHHHHh-hCCcceEEe-ccccCHHHHHHHHHcCCCEEe
Confidence 345689999998764433 3688888885 457888764 344567778888999998764
No 334
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=33.71 E-value=84 Score=22.13 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=28.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALE 86 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~ 86 (241)
..|+++...-.........|...||++.....|-.++.
T Consensus 57 ~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~~W~ 94 (103)
T 3iwh_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWG 94 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHHHC
T ss_pred CeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHHHHH
Confidence 35777766666666777889999999887777777663
No 335
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=33.62 E-value=73 Score=27.10 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=42.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP 172 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP 172 (241)
...||+||+=---|..-|-.-++.+-.. .++|.|++|........ .+++..-.+||.-+
T Consensus 62 ~~~pDfvI~isPN~a~PGP~~ARE~l~~--~~iP~IvI~D~p~~K~k-d~l~~~g~GYIivk 120 (283)
T 1qv9_A 62 DFEPDFIVYGGPNPAAPGPSKAREMLAD--SEYPAVIIGDAPGLKVK-DEMEEQGLGYILVK 120 (283)
T ss_dssp HHCCSEEEEECSCTTSHHHHHHHHHHHT--SSSCEEEEEEGGGGGGH-HHHHHTTCEEEEET
T ss_pred hcCCCEEEEECCCCCCCCchHHHHHHHh--CCCCEEEEcCCcchhhH-HHHHhcCCcEEEEe
Confidence 4579999998877888898888876532 68999999987776644 55555555665433
No 336
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=33.37 E-value=1.6e+02 Score=24.77 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=12.1
Q ss_pred HHHHHHHhhcCcEEEEEC
Q 026247 62 KILENLLRVSSYQVTCVD 79 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~~ 79 (241)
..+...+...||.+..+.
T Consensus 90 ~gi~~~a~~~g~~~~~~~ 107 (355)
T 3e3m_A 90 QSLTDVLEQGGLQLLLGY 107 (355)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 445566677899887653
No 337
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=33.15 E-value=1e+02 Score=25.67 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=42.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc--Cc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS--SY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~--g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|..||=++......++.+... ++ .+. ..+|+.+.+.. ....||+|++|.
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~----------------------~~~~fD~Ii~d~ 156 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK----------------------SENQYDVIMVDS 156 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----------------------CCSCEEEEEESC
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----------------------CCCCeeEEEECC
Confidence 458999999999998888877431 11 233 35666554432 245799999998
Q ss_pred CCCCCC-----HHHHHHHHh
Q 026247 122 CMPGMT-----GYDLLKRLK 136 (241)
Q Consensus 122 ~mp~~~-----G~el~~~lr 136 (241)
-.|... ..++.+.++
T Consensus 157 ~~~~~~~~~l~~~~~~~~~~ 176 (275)
T 1iy9_A 157 TEPVGPAVNLFTKGFYAGIA 176 (275)
T ss_dssp SSCCSCCCCCSTTHHHHHHH
T ss_pred CCCCCcchhhhHHHHHHHHH
Confidence 655321 235555554
No 338
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=33.12 E-value=1.3e+02 Score=26.36 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=39.9
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhcCcEEEEEC------CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 49 FHVLAVDDSLI-----DRKILENLLRVSSYQVTCVD------SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 49 ~~VLIVDDd~~-----~~~~l~~~L~~~g~~V~~~~------~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
-++|||-|... ....+.+.|+..|+.+..+. +.+...+.+... .+..+|+|
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~------------------~~~~~d~I 102 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY------------------RNDSFDFV 102 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH------------------TTSCCSEE
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH------------------HhcCCCEE
Confidence 47888877632 34667777887887665432 333333333211 45578988
Q ss_pred EEeCCCCCCCHHHHHHHHhh
Q 026247 118 MTDYCMPGMTGYDLLKRLKV 137 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~ 137 (241)
|- +.|..-+++++.+-.
T Consensus 103 Ia---vGGGsv~D~AK~iA~ 119 (371)
T 1o2d_A 103 VG---LGGGSPMDFAKAVAV 119 (371)
T ss_dssp EE---EESHHHHHHHHHHHH
T ss_pred EE---eCChHHHHHHHHHHH
Confidence 74 345555677776643
No 339
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=33.06 E-value=1.6e+02 Score=22.35 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=52.8
Q ss_pred EEEEE--eCCHHHHHHHHHHHhhcCcEEEEEC-CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 50 HVLAV--DDSLIDRKILENLLRVSSYQVTCVD-SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 50 ~VLIV--DDd~~~~~~l~~~L~~~g~~V~~~~-~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+|.++ .........+...|...|..+.... ++.+....+. .-..=|++|+ +...|.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--------------------~~~~~d~~i~-iS~sG~ 99 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLA--------------------NLRPTDLMIG-VSVWRY 99 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHH--------------------TCCTTEEEEE-ECCSSC
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHh--------------------cCCCCCEEEE-EeCCCC
Confidence 66666 4566677778888888999998887 5666555442 1122344444 455553
Q ss_pred C--HHHHHHHHhhcCCCCCcEEEEecCCChHHH
Q 026247 127 T--GYDLLKRLKVSSWKDVPVVVMSSENVPSRV 157 (241)
Q Consensus 127 ~--G~el~~~lr~~~~~~~pII~lsa~~~~~~~ 157 (241)
+ -.++++..|. ..+++|.+|+.......
T Consensus 100 t~~~~~~~~~ak~---~g~~vi~IT~~~~s~l~ 129 (187)
T 3sho_A 100 LRDTVAALAGAAE---RGVPTMALTDSSVSPPA 129 (187)
T ss_dssp CHHHHHHHHHHHH---TTCCEEEEESCTTSHHH
T ss_pred CHHHHHHHHHHHH---CCCCEEEEeCCCCCcch
Confidence 3 3455566653 46899999997655443
No 340
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=33.01 E-value=1.4e+02 Score=21.51 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
+.+|+|+---. +...+...|...|+.|..++.-.+.++.+
T Consensus 6 ~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~ 45 (141)
T 3llv_A 6 RYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELL 45 (141)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 34799998866 56666677777899998887666666665
No 341
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=32.89 E-value=1.3e+02 Score=24.20 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=40.8
Q ss_pred CCHHHHH---HHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 56 DSLIDRK---ILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 56 Dd~~~~~---~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
+++.... .+++.++..||.+..+. +.....+.+..+ ....+|.||+--.-+.. -.
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l------------------~~~~vdgiI~~~~~~~~-~~ 79 (293)
T 3l6u_A 19 KHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEF------------------VHLKVDAIFITTLDDVY-IG 79 (293)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH------------------HHTTCSEEEEECSCTTT-TH
T ss_pred CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH------------------HHcCCCEEEEecCChHH-HH
Confidence 4555444 45566778899887643 233333333211 34678988875332221 12
Q ss_pred HHHHHHhhcCCCCCcEEEEecC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~ 151 (241)
+.++.++. ..+|+|++...
T Consensus 80 ~~~~~~~~---~~iPvV~~~~~ 98 (293)
T 3l6u_A 80 SAIEEAKK---AGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHH---TTCCEEEESSC
T ss_pred HHHHHHHH---cCCCEEEecCC
Confidence 55666653 36788887543
No 342
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=32.80 E-value=31 Score=31.43 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE------eC-CCChHHHHHHHHHHhcCC
Q 026247 130 DLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL------LK-PVRLSDLEKLQPRLLKSP 189 (241)
Q Consensus 130 el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL------~K-P~~~~~L~~~i~~~l~~~ 189 (241)
++++.++..-...+|||....-.+.+++.+++.+||+... .. |.-..++..-+.+++...
T Consensus 333 ~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~~ 399 (415)
T 3i65_A 333 KFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQR 399 (415)
T ss_dssp HHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 6777777543347999999999999999999999998643 34 555666666677766543
No 343
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=32.73 E-value=88 Score=25.94 Aligned_cols=86 Identities=8% Similarity=-0.095 Sum_probs=50.0
Q ss_pred ccEEEEE-eCCHH---HHHHHHHHHhhcCcEEEE---E----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccE
Q 026247 48 TFHVLAV-DDSLI---DRKILENLLRVSSYQVTC---V----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNL 116 (241)
Q Consensus 48 ~~~VLIV-DDd~~---~~~~l~~~L~~~g~~V~~---~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 116 (241)
..+|.++ +|+.. ....+++.|+..|..+.. + .+....+..+ ....||+
T Consensus 135 ~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l---------------------~~~~~da 193 (362)
T 3snr_A 135 VKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKL---------------------VAANPDA 193 (362)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHH---------------------HHHCCSE
T ss_pred CCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHH---------------------HhcCCCE
Confidence 3466655 44443 334566677778887542 2 2444555555 3346899
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHH
Q 026247 117 IMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRV 157 (241)
Q Consensus 117 VllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~ 157 (241)
|++.. .+.....+++.++... ..+|++...+..+....
T Consensus 194 v~~~~--~~~~a~~~~~~~~~~g-~~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 194 ILVGA--SGTAAALPQTTLRERG-YNGLIYQTHGAASMDFI 231 (362)
T ss_dssp EEEEC--CHHHHHHHHHHHHHTT-CCSEEEECGGGCSHHHH
T ss_pred EEEec--CcchHHHHHHHHHHcC-CCccEEeccCcCcHHHH
Confidence 98853 2334566777777543 46788666666555444
No 344
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=32.71 E-value=1.1e+02 Score=24.77 Aligned_cols=57 Identities=7% Similarity=0.171 Sum_probs=39.7
Q ss_pred CCcc-EEEEeCCCC---CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVN-LIMTDYCMP---GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~D-lVllD~~mp---~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..+| +.+.|+.-. ...-+++++.++.. ..+||++--.-.+.+.+.+++..|++..+.
T Consensus 47 ~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~--~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 47 RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL--TTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp TTCSEEEEEETTTTTCSSCCCHHHHHHHGGG--CCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred cCCCEEEEEecCcccCCCcccHHHHHHHHHh--CCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 3455 445666422 22236888888854 378999887777889999999999887654
No 345
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=32.69 E-value=35 Score=28.64 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=36.3
Q ss_pred cCCCccEEEEeCCCCC--CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 110 EESRVNLIMTDYCMPG--MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~--~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
.....|+|++--.... -+-.++++++|. .++|+|++++.. ..+..|+|+||.-
T Consensus 33 ~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~---~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 33 CMSQTDAIMIGGTDDVTEDNVIHLMSKIRR---YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HTSSCSEEEECCSSCCCHHHHHHHHHHHTT---SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHcCCCEEEECCcCCcCHHHHHHHHHHhcC---cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 4566899999875422 234667777773 589999998853 2235699998764
No 346
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=32.64 E-value=1.4e+02 Score=22.96 Aligned_cols=54 Identities=9% Similarity=0.064 Sum_probs=40.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+.+|.+.. .......+..++...|+ .+..+.+..+++..+ .....|+++.|.
T Consensus 146 L~g~~i~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l---------------------~~g~vDa~~~~~ 201 (259)
T 2v25_A 146 MKGANIGVAQ-AATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAAL---------------------DAKRVDAFSVDK 201 (259)
T ss_dssp CTTCEEEEET-TCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHH---------------------HTTSSSEEEEEH
T ss_pred hCCCEEEEec-CCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHH---------------------HcCCCcEEEecH
Confidence 3456777664 44456667777777775 667789999999998 678899999974
No 347
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=32.56 E-value=55 Score=28.88 Aligned_cols=59 Identities=7% Similarity=-0.003 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE-------eCCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL-------LKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL-------~KP~~~~~L~~~i~~~l~ 187 (241)
+++++.++......+|||..-.-.+.+++.+++.+||+... .-|.-..++...+.+++.
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l~ 327 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMT 327 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHHH
Confidence 56778887543347999999999999999999999998652 235445555666666654
No 348
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=32.43 E-value=1.2e+02 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=21.9
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHhhcCcEEEEECC
Q 026247 46 QETFHVLAVDDS----LIDRKILENLLRVSSYQVTCVDS 80 (241)
Q Consensus 46 ~~~~~VLIVDDd----~~~~~~l~~~L~~~g~~V~~~~~ 80 (241)
...||||++-.. -.-...+...|...|++|+.+..
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 344799998643 11223466677778998886644
No 349
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=32.40 E-value=1.1e+02 Score=26.41 Aligned_cols=94 Identities=27% Similarity=0.326 Sum_probs=59.7
Q ss_pred eCCHHHHHHHHHHHhhc-CcEEEE------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-C
Q 026247 55 DDSLIDRKILENLLRVS-SYQVTC------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-M 126 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~-g~~V~~------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~ 126 (241)
+|.......++.++... ++.+++ +.+..+|++.+ .+..+|-||+-=+-|. .
T Consensus 135 ~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~L---------------------i~lGvdrILTSG~~~~a~ 193 (287)
T 3iwp_A 135 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETL---------------------LTLGFERVLTSGCDSSAL 193 (287)
T ss_dssp TTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHH---------------------HHHTCSEEEECTTSSSTT
T ss_pred CCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHH---------------------HHcCCCEEECCCCCCChH
Confidence 35455666666666542 344443 44688899988 3447999999766543 7
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHH-cCCcceEe
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLE-EGAEEFLL 170 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~-~Ga~dyL~ 170 (241)
+|++.++++.......++|++- +-...+.+.+.++ .|++.|-.
T Consensus 194 ~Gl~~Lk~Lv~~a~~rI~ImaG-GGV~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 194 EGLPLIKRLIEQAKGRIVVMPG-GGITDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp TTHHHHHHHHHHHTTSSEEEEC-TTCCTTTHHHHHHHHCCSEEEE
T ss_pred HhHHHHHHHHHHhCCCCEEEEC-CCcCHHHHHHHHHhhCCCEEeE
Confidence 8999999987543334555433 3344555555554 89998865
No 350
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=32.36 E-value=2.6e+02 Score=24.77 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=43.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC---c------EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEE
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSS---Y------QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIM 118 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g---~------~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVl 118 (241)
-+|.+||=|+......++.|...+ + .+. ...|+.+.++.+. .....||+||
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~-------------------~~~~~fDvII 272 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA-------------------KEGREFDYVI 272 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH-------------------HHTCCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhh-------------------ccCCCceEEE
Confidence 579999999999999988875321 1 233 4677777665431 0246799999
Q ss_pred EeCCC-CC------CCHHHHHHHH
Q 026247 119 TDYCM-PG------MTGYDLLKRL 135 (241)
Q Consensus 119 lD~~m-p~------~~G~el~~~l 135 (241)
+|.-- |. ....++.+.+
T Consensus 273 ~D~~d~P~~~~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 273 NDLTAVPISTSPEEDSTWEFLRLI 296 (364)
T ss_dssp EECCSSCCCCC----CHHHHHHHH
T ss_pred ECCCCcccCcCchhhhHHHHHHHH
Confidence 99855 42 2335565655
No 351
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=32.33 E-value=1.1e+02 Score=21.18 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=29.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEY 87 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~ 87 (241)
..|+++.+...........|...||. |....-|-.++..
T Consensus 59 ~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 98 (108)
T 1gmx_A 59 TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQR 98 (108)
T ss_dssp SCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHHHH
Confidence 35777777766667778888889995 8888888877643
No 352
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=32.10 E-value=79 Score=27.40 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+....+.+..++... .++|||+...-.+.+++.+++.+||+.+..=
T Consensus 235 g~~~~~~l~~v~~~~-~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 235 GISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp SCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CccHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 345667777776433 5799999998889999999999999987543
No 353
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=31.70 E-value=1.9e+02 Score=24.54 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=12.4
Q ss_pred hHHHHHHHHcCCcceEeCCC
Q 026247 154 PSRVTMCLEEGAEEFLLKPV 173 (241)
Q Consensus 154 ~~~~~~a~~~Ga~dyL~KP~ 173 (241)
.+....++++|..=|+-||+
T Consensus 80 ~~~~~~al~~Gk~vl~EKP~ 99 (344)
T 3mz0_A 80 ESSVLKAIKAQKYVFCEKPL 99 (344)
T ss_dssp HHHHHHHHHTTCEEEECSCS
T ss_pred HHHHHHHHHCCCcEEEcCCC
Confidence 44555666666666666665
No 354
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=31.65 E-value=1.6e+02 Score=24.02 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=52.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcE-EEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQ-VTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~-V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
...+|..||-++.....+++.....|.. |.. ..+..+....- .....||+|++..-.
T Consensus 103 ~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~--------------------~~~~~fD~I~s~a~~- 161 (249)
T 3g89_A 103 PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA--------------------GHREAYARAVARAVA- 161 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST--------------------TTTTCEEEEEEESSC-
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc--------------------ccCCCceEEEECCcC-
Confidence 4568999999999999999988877763 543 45554432100 023579999997532
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
+--.+++.+...-.++-.++++.+....+
T Consensus 162 --~~~~ll~~~~~~LkpgG~l~~~~g~~~~~ 190 (249)
T 3g89_A 162 --PLCVLSELLLPFLEVGGAAVAMKGPRVEE 190 (249)
T ss_dssp --CHHHHHHHHGGGEEEEEEEEEEECSCCHH
T ss_pred --CHHHHHHHHHHHcCCCeEEEEEeCCCcHH
Confidence 23455555543222344566666544333
No 355
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=31.57 E-value=1e+02 Score=24.27 Aligned_cols=67 Identities=4% Similarity=0.001 Sum_probs=43.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|..+|-++......+..+...|. .+.. ..++.+.+..+. ....||+|++|...+
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--------------------~~~~fD~I~~~~~~~ 137 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE--------------------LYPLFDVLFIDAAKG 137 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT--------------------TSCCEEEEEEEGGGS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc--------------------cCCCccEEEECCCHH
Confidence 45899999999888888888877764 2433 445544433320 145799999997654
Q ss_pred CCCHHHHHHHHh
Q 026247 125 GMTGYDLLKRLK 136 (241)
Q Consensus 125 ~~~G~el~~~lr 136 (241)
+-..+++.+.
T Consensus 138 --~~~~~l~~~~ 147 (233)
T 2gpy_A 138 --QYRRFFDMYS 147 (233)
T ss_dssp --CHHHHHHHHG
T ss_pred --HHHHHHHHHH
Confidence 3345556655
No 356
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=31.56 E-value=2.3e+02 Score=24.84 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC----CC-CCCHHHHHH
Q 026247 61 RKILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC----MP-GMTGYDLLK 133 (241)
Q Consensus 61 ~~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~----mp-~~~G~el~~ 133 (241)
...++.+-+..+. .|..+.+.++|.... +.-.|.|.+.-. +. +..-++++.
T Consensus 218 ~~~i~~lr~~~~~PvivK~v~~~e~a~~a~----------------------~~Gad~I~vs~~ggr~~~~g~~~~~~l~ 275 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVKGIQHPEDADMAI----------------------KRGASGIWVSNHGARQLYEAPGSFDTLP 275 (368)
T ss_dssp HHHHHHHHHHSSSCEEEEEECSHHHHHHHH----------------------HTTCSEEEECCGGGTSCSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHHHH----------------------HcCCCEEEEcCCCcCCCCCCCChHHHHH
Confidence 3444444444443 344567888886654 345787777431 11 233467777
Q ss_pred HHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe-CCC
Q 026247 134 RLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL-KPV 173 (241)
Q Consensus 134 ~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~-KP~ 173 (241)
.++..-...+|||+-..-.+..++.+++..||+.... .|+
T Consensus 276 ~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~ 316 (368)
T 2nli_A 276 AIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPV 316 (368)
T ss_dssp HHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 7774322369999888888999999999999998754 354
No 357
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=31.45 E-value=67 Score=27.24 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce------Ee-CCCChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF------LL-KPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy------L~-KP~~~~~L~~~i~~~l~~ 188 (241)
+++++.++... +++|||..-.-.+.+++.+++.+||+.. +. .|.-..++.+-+..++..
T Consensus 232 ~~~i~~v~~~~-~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~ 297 (314)
T 2e6f_A 232 LANVNAFYRRC-PDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMAR 297 (314)
T ss_dssp HHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHH
Confidence 67888887544 6899998888888999999999999855 32 566666666666666643
No 358
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.97 E-value=2.5e+02 Score=23.89 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=30.1
Q ss_pred CCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHhc
Q 026247 142 DVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLLK 187 (241)
Q Consensus 142 ~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l~ 187 (241)
++-+|+++.. ...+....|+++|..=|+-||+ +.++...++..+.+
T Consensus 67 ~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 67 SIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp SCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 3444444333 3467788899999988999994 56666665555443
No 359
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=30.83 E-value=1.6e+02 Score=26.15 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCc--EEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC-----CCCCHHHHHHH
Q 026247 62 KILENLLRVSSY--QVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM-----PGMTGYDLLKR 134 (241)
Q Consensus 62 ~~l~~~L~~~g~--~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m-----p~~~G~el~~~ 134 (241)
..++.+-+..+. .|-.+.+.++|.... +.-+|.|.+.-.- -+..-++++..
T Consensus 242 ~~i~~lr~~~~~PvivKgv~~~e~A~~a~----------------------~aGad~I~vs~~ggr~~~~g~~~~~~l~~ 299 (392)
T 2nzl_A 242 EDIKWLRRLTSLPIVAKGILRGDDAREAV----------------------KHGLNGILVSNHGARQLDGVPATIDVLPE 299 (392)
T ss_dssp HHHHHHC--CCSCEEEEEECCHHHHHHHH----------------------HTTCCEEEECCGGGTSSTTCCCHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEecCCHHHHHHHH----------------------HcCCCEEEeCCCCCCcCCCCcChHHHHHH
Confidence 334444333343 333467777776664 3457888774321 02234667777
Q ss_pred HhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE-eCCC
Q 026247 135 LKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL-LKPV 173 (241)
Q Consensus 135 lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL-~KP~ 173 (241)
++..-...+|||+-..-.+..++.+++..||+... -.|+
T Consensus 300 v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 300 IVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp HHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHH
Confidence 76432236899988888889999999999999874 4455
No 360
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=30.75 E-value=79 Score=26.07 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 128 GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
..+++++++.. .++||++-.+-.+.+.+.+++.+||++++.=
T Consensus 189 ~~~~i~~v~~~--~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKV--TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHH--CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhh--cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 45677888753 3689988777777899999999999998763
No 361
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=30.65 E-value=2.1e+02 Score=23.97 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=34.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh--cCc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRV--SSY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~--~g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|..||=++......++.+.. .++ .+. ..+|+.+.+.. ....||+|++|.
T Consensus 114 ~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----------------------~~~~fD~Ii~d~ 171 (296)
T 1inl_A 114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK----------------------FKNEFDVIIIDS 171 (296)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG----------------------CSSCEEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----------------------CCCCceEEEEcC
Confidence 45899999999988888887743 111 233 35666544321 245699999997
Q ss_pred CCC
Q 026247 122 CMP 124 (241)
Q Consensus 122 ~mp 124 (241)
-.|
T Consensus 172 ~~~ 174 (296)
T 1inl_A 172 TDP 174 (296)
T ss_dssp ---
T ss_pred CCc
Confidence 554
No 362
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=30.55 E-value=67 Score=24.94 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCcEEE---EECCHHHHH-HHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 59 IDRKILENLLRVSSYQVT---CVDSGDKAL-EYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 59 ~~~~~l~~~L~~~g~~V~---~~~~~~eal-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.+...|.++|...|++|. .+.|-.+.+ +.+... .....+|+||+-=.+
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~-----------------~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA-----------------LSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH-----------------HTCTTCCEEEEESCC
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH-----------------HhcCCCCEEEecCCc
Confidence 356679999999999875 455544433 333110 034568999986544
No 363
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=30.52 E-value=1.6e+02 Score=22.18 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+.+|.++....... .|...+..+..+.+..+++..| .....|+++.|.
T Consensus 114 L~g~~v~~~~g~~~~~-----~l~~~~~~~~~~~~~~~~~~~l---------------------~~g~vDa~~~~~ 163 (233)
T 1ii5_A 114 LKNKEVAVVRDTTAVD-----WANFYQADVRETNNLTAAITLL---------------------QKKQVEAVMFDR 163 (233)
T ss_dssp GTTCEEEEETTSHHHH-----HHHHTTCEEEEESSHHHHHHHH---------------------HTTSCSEEEEEH
T ss_pred hCCCeEEEECCccHHH-----HHHHcCCCeEEcCCHHHHHHHH---------------------HcCCccEEEeCH
Confidence 3456888887766533 3444588899999999999999 678899999984
No 364
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=30.48 E-value=2.1e+02 Score=22.96 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=8.1
Q ss_pred CCChHHHHHHHHHHhc
Q 026247 172 PVRLSDLEKLQPRLLK 187 (241)
Q Consensus 172 P~~~~~L~~~i~~~l~ 187 (241)
.++.+.-...+.+++.
T Consensus 167 ~~~~~~~~~~~~~~l~ 182 (287)
T 3bbl_A 167 EGTFEVGRAMTLHLLD 182 (287)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3444444555555554
No 365
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=30.44 E-value=1.8e+02 Score=23.40 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCcEEEEEC--CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcC
Q 026247 62 KILENLLRVSSYQVTCVD--SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSS 139 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~~--~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~ 139 (241)
..+++.++..||.+..+. +.+...+.+..+ ....+|.||+.-.-+. .....++.++.
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l------------------~~~~vdgiii~~~~~~-~~~~~~~~~~~-- 80 (306)
T 8abp_A 22 KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSL------------------AASGAKGFVICTPDPK-LGSAIVAKARG-- 80 (306)
T ss_dssp HHHHHHHHHHTEEEEEEECCSHHHHHHHHHHH------------------HHTTCCEEEEECSCGG-GHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHH------------------HHcCCCEEEEeCCCch-hhHHHHHHHHH--
Confidence 345566677899877543 444334444221 3456898887643222 22334566653
Q ss_pred CCCCcEEEEe
Q 026247 140 WKDVPVVVMS 149 (241)
Q Consensus 140 ~~~~pII~ls 149 (241)
..+|+|++.
T Consensus 81 -~~iPvV~~~ 89 (306)
T 8abp_A 81 -YDMKVIAVD 89 (306)
T ss_dssp -TTCEEEEES
T ss_pred -CCCcEEEeC
Confidence 468988886
No 366
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=30.42 E-value=71 Score=27.72 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=40.1
Q ss_pred CccEEEE-eCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 113 RVNLIMT-DYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 113 ~~DlVll-D~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.+|.|++ |-+.--..| -+.++..|.. .+..+|.+-.. +.+...+++++|++......++++++...+..+
T Consensus 179 L~d~vlikdNHi~~~G~i~~Av~~~r~~-~p~~~ieVEvd--tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 179 LYAGILIKENHIAAAGGVGEALDAAFAL-NAEVPVQIEVE--TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp ----------------CHHHHHHHHHHH-C--CCCEEEES--SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CCcEEEEeHHHHHHcCCHHHHHHHHHHh-CCCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3555555 333222222 3556667643 35677766543 356788899999999999999999999988876
No 367
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.40 E-value=1.2e+02 Score=24.40 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=11.2
Q ss_pred HHHHHHHhhcCcEEEEEC
Q 026247 62 KILENLLRVSSYQVTCVD 79 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~~ 79 (241)
..+++.++..||.+..+.
T Consensus 28 ~gi~~~a~~~g~~~~~~~ 45 (291)
T 3egc_A 28 SGVESEARHKGYSVLLAN 45 (291)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 345555667788776544
No 368
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=30.38 E-value=3.2e+02 Score=25.00 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=59.5
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhc-CcEEE--EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVD----DSLIDRKILENLLRVS-SYQVT--CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVD----Dd~~~~~~l~~~L~~~-g~~V~--~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..++++| +.......++.+-+.. +..|. .+.+.+.|..++ +.-.|.|.+.+
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~----------------------~aGaD~I~Vg~ 301 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALI----------------------EAGVSAVKVGI 301 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHH----------------------HHTCSEEEECS
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHH----------------------HhCCCEEEECC
Confidence 4566665 3344445555555544 33332 366777776655 23578888753
Q ss_pred CCCC------------CCHHHHHHHHhhc-CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 122 CMPG------------MTGYDLLKRLKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 122 ~mp~------------~~G~el~~~lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
. |+ ...+.++..+... ....+|||+--+-....++.+++.+||+..+.
T Consensus 302 g-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 302 G-PGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp S-CCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred C-CCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 2 11 1234444554421 11368999877777899999999999998755
No 369
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=30.23 E-value=1.6e+02 Score=25.35 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=56.8
Q ss_pred CccEEEEEeCCHHHHH-HHHHHHhhcCcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRK-ILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~-~l~~~L~~~g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..++|.||---..-.. .+..+....++++.. ++...+..+.+. ......-+..
T Consensus 4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a--------------------~~~~~~~~~~----- 58 (359)
T 3m2t_A 4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVH--------------------RFISDIPVLD----- 58 (359)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGG--------------------GTSCSCCEES-----
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH--------------------HhcCCCcccC-----
Confidence 3578999988877665 444444434777764 443333333331 1100001111
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHH
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRL 185 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~ 185 (241)
+--+++. . +++-+|+++.. ...+....|+++|..=|+-||+ +.++...++..+
T Consensus 59 --~~~~ll~----~--~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a 115 (359)
T 3m2t_A 59 --NVPAMLN----Q--VPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAA 115 (359)
T ss_dssp --SHHHHHH----H--SCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred --CHHHHhc----C--CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 2222322 2 23444545433 3456778899999999999996 445665555444
No 370
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=30.19 E-value=1.4e+02 Score=24.20 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=8.7
Q ss_pred HHHHHHhhcCcEEEE
Q 026247 63 ILENLLRVSSYQVTC 77 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~ 77 (241)
.+.+.++..||.+..
T Consensus 32 gi~~~a~~~g~~~~~ 46 (289)
T 3k9c_A 32 QIYAAATRRGYDVML 46 (289)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCEEEE
Confidence 344555567776654
No 371
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=29.85 E-value=95 Score=27.76 Aligned_cols=51 Identities=12% Similarity=-0.028 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE---EE-EECCHHHHHH-HHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ---VT-CVDSGDKALE-YLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~---V~-~~~~~~eal~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
-+|..||-++...+.+++-++..|.+ +. ...|+.+.+. .+ ...||+|++|-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~----------------------~~~fD~V~lDP 133 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW----------------------GFGFDYVDLDP 133 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC----------------------SSCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh----------------------CCCCcEEEECC
Confidence 47999999999999999999888863 54 3556665543 22 34699999997
No 372
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=29.63 E-value=1.2e+02 Score=24.08 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=37.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+|.-||-++......++.....|..+.. ..+..+.+.-+ .+..||+|++|
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~---------------------~~~~fD~V~~d 135 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL---------------------PDGHFDGILYD 135 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS---------------------CTTCEEEEEEC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc---------------------CCCceEEEEEC
Confidence 7999999999999998888777766653 56666643223 45679999995
No 373
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=29.54 E-value=64 Score=27.65 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=41.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCCh--HHHHHHHHHHh
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRL--SDLEKLQPRLL 186 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~--~~L~~~i~~~l 186 (241)
..++|+||+|+- |. +|...+...|... .-+...+.++-|-..|+.|=|.. +++.+.+..+.
T Consensus 137 ~~~~DvVLSDMA-Pn-SG~~~vD~~Rs~~-------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk 199 (269)
T 2px2_A 137 SEISDTLLCDIG-ES-SPSAEIEEQRTLR-------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQ 199 (269)
T ss_dssp CCCCSEEEECCC-CC-CSCHHHHHHHHHH-------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEeCCC-CC-CCccHHHHHHHHH-------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHH
Confidence 447899999974 44 8877777777421 23455566777776799998887 67766444443
No 374
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=29.43 E-value=1.7e+02 Score=26.82 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
...+.+++ . ..+..-..++..+|. .. .++||+-... .+.......+|++..+.
T Consensus 191 ~~a~~vi~-t-~~D~~n~~~~~~ar~-~~-~~~iiar~~~--~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 191 AAARSIIA-N-LSDPDNANLCLTVRS-LC-QTPIIAVVKE--PVHGELLRLAGANQVVP 243 (565)
T ss_dssp GGCSEEEE-C-SCHHHHHHHHHHHHT-TC-CCCEEEECSS--GGGHHHHHHHTCSEEEC
T ss_pred ccCCEEEE-e-CCcHHHHHHHHHHHH-hc-CceEEEEECC--HHHHHHHHHcCCCEEEC
Confidence 34677777 2 233223344444553 33 7788776553 45555667899986554
No 375
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=29.32 E-value=70 Score=24.69 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=26.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKA 84 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~ea 84 (241)
|+|||.--.-.+...+...|...|++|..+....+.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK 36 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh
Confidence 478888888888888877777789988865433333
No 376
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=29.32 E-value=2.3e+02 Score=24.46 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=43.9
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
+.+.+.+++.+.+. ...|+|++|- |+--++-+.++... . -..+..|+--..+
T Consensus 212 VEv~tl~e~~eAl~----------------------aGaDiImLDn----~s~~~l~~av~~~~-~-~v~leaSGGIt~~ 263 (300)
T 3l0g_A 212 IECDNISQVEESLS----------------------NNVDMILLDN----MSISEIKKAVDIVN-G-KSVLEVSGCVNIR 263 (300)
T ss_dssp EEESSHHHHHHHHH----------------------TTCSEEEEES----CCHHHHHHHHHHHT-T-SSEEEEESSCCTT
T ss_pred EEECCHHHHHHHHH----------------------cCCCEEEECC----CCHHHHHHHHHhhc-C-ceEEEEECCCCHH
Confidence 46899999999882 3589999996 33333322222111 2 2466788888888
Q ss_pred HHHHHHHcCCcce
Q 026247 156 RVTMCLEEGAEEF 168 (241)
Q Consensus 156 ~~~~a~~~Ga~dy 168 (241)
.+....+.|+|.+
T Consensus 264 ~i~~~A~tGVD~I 276 (300)
T 3l0g_A 264 NVRNIALTGVDYI 276 (300)
T ss_dssp THHHHHTTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 8888889999643
No 377
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=29.24 E-value=2.5e+02 Score=23.49 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=22.1
Q ss_pred ChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 153 VPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 153 ~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
..+....++++|..=|+-||+ +.++...++..+.
T Consensus 76 h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 111 (331)
T 4hkt_A 76 HADLIERFARAGKAIFCEKPIDLDAERVRACLKVVS 111 (331)
T ss_dssp HHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 356677788888887888885 4555555544443
No 378
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=29.22 E-value=2.2e+02 Score=24.07 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=60.5
Q ss_pred eCCHHHHHHHHHHHhh-cCcEEEE------ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-CC
Q 026247 55 DDSLIDRKILENLLRV-SSYQVTC------VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-GM 126 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~-~g~~V~~------~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-~~ 126 (241)
.|..+....++.++.. .|..++. +.+..+|++.| .+..++=||+.=.-+ -.
T Consensus 97 ~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L---------------------~~lG~~rILTSG~~~~a~ 155 (256)
T 1twd_A 97 VDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNL---------------------AELGIARVLTSGQKSDAL 155 (256)
T ss_dssp TTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHH---------------------HHHTCCEEEECTTSSSTT
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHH---------------------HHcCCCEEECCCCCCCHH
Confidence 4555667777777753 4677764 67889999988 344688899864443 37
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEe-cCCChHHHHHHHHcCCcceE
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMS-SENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~ls-a~~~~~~~~~a~~~Ga~dyL 169 (241)
+|++.++.+..... .|.+|. +-...+.+......|+..|-
T Consensus 156 ~g~~~L~~Lv~~a~---~i~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 156 QGLSKIMELIAHRD---APIIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp TTHHHHHHHHTSSS---CCEEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHhhC---CcEEEecCCcCHHHHHHHHHcCCCeEe
Confidence 89999999975432 444443 33444555555578888776
No 379
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=29.12 E-value=2.2e+02 Score=23.00 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=48.9
Q ss_pred ccEEEEEeCC------HHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDS------LIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd------~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|++|+-- ..+...+.+.|+..|+++..+...++..+.|. ..|.|++
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~-----------------------~ad~I~l-- 85 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE-----------------------KAEIIIV-- 85 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH-----------------------HCSEEEE--
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh-----------------------cCCEEEE--
Confidence 4689999854 25667778889999998887732222333331 2577776
Q ss_pred CCCCCCHHHHHHHHhhcC---------CCCCcEEEEec
Q 026247 122 CMPGMTGYDLLKRLKVSS---------WKDVPVVVMSS 150 (241)
Q Consensus 122 ~mp~~~G~el~~~lr~~~---------~~~~pII~lsa 150 (241)
|+.+-..+.+.|+... ....|++-+|+
T Consensus 86 --pGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sA 121 (229)
T 1fy2_A 86 --GGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSA 121 (229)
T ss_dssp --CCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred --CCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECH
Confidence 7888888777776421 13467766653
No 380
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=29.06 E-value=1.8e+02 Score=22.92 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=30.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--EE-EECCHHHHHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--VT-CVDSGDKALEY 87 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~-~~~~~~eal~~ 87 (241)
..+|..+|-++......++.+...|+. +. ...++.+.+..
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 127 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQV 127 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHH
Confidence 458999999999999999998877752 43 46677766543
No 381
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.03 E-value=1.2e+02 Score=24.71 Aligned_cols=15 Identities=13% Similarity=-0.164 Sum_probs=8.0
Q ss_pred HHHHHHhhcCcEEEE
Q 026247 63 ILENLLRVSSYQVTC 77 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~ 77 (241)
.+.+.++..||.+..
T Consensus 36 gi~~~a~~~g~~~~~ 50 (303)
T 3kke_A 36 GVQMAASGHSTDVLL 50 (303)
T ss_dssp HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCEEEE
Confidence 344455556666554
No 382
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=29.01 E-value=88 Score=26.44 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce------Ee-CCCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF------LL-KPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy------L~-KP~~~~~L~~~i~~~l~ 187 (241)
+++++.++.....++|||..-.-.+.+++.+++.+||+.. +. -|.-..++.+-+..++.
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~ 294 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMN 294 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHH
Confidence 5777888744323799999988888999999999999865 22 45444555555555553
No 383
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=29.00 E-value=1.2e+02 Score=23.16 Aligned_cols=41 Identities=2% Similarity=0.009 Sum_probs=24.5
Q ss_pred cCCCccEEEEeCCCCCCCH---HHHHHHHhhcCCCCCcEEEEec
Q 026247 110 EESRVNLIMTDYCMPGMTG---YDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G---~el~~~lr~~~~~~~pII~lsa 150 (241)
....||+|++...+..... ..+++.++..-.++-.+++.+.
T Consensus 104 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 104 PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4567999999987766554 4566666533223334444433
No 384
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=28.99 E-value=1.5e+02 Score=21.62 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=43.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG 128 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G 128 (241)
+|.-+|=++......+..+...+..+.. ..+..+.+..+. .....||+|++|.-.. .+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~-------------------~~~~~~D~i~~~~~~~-~~~ 124 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK-------------------AQGERFTVAFMAPPYA-MDL 124 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH-------------------HTTCCEEEEEECCCTT-SCT
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhh-------------------ccCCceEEEEECCCCc-hhH
Confidence 4999999999999888888766654443 456666544331 0134799999995432 333
Q ss_pred HHHHHHHh
Q 026247 129 YDLLKRLK 136 (241)
Q Consensus 129 ~el~~~lr 136 (241)
-++++.+.
T Consensus 125 ~~~~~~~~ 132 (171)
T 1ws6_A 125 AALFGELL 132 (171)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 35555554
No 385
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=28.82 E-value=1.1e+02 Score=24.32 Aligned_cols=65 Identities=12% Similarity=0.143 Sum_probs=45.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHH-HHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALE-YLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
..+|.-||-++......++.+...|+ .+. ...++.+.+. .+ ...||+|++|...
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------------------~~~fD~V~~~~~~ 152 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN----------------------DKVYDMIFIDAAK 152 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT----------------------TSCEEEEEEETTS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc----------------------cCCccEEEEcCcH
Confidence 56899999999999999999987775 343 4566655544 33 4579999999754
Q ss_pred CCCCHHHHHHHHh
Q 026247 124 PGMTGYDLLKRLK 136 (241)
Q Consensus 124 p~~~G~el~~~lr 136 (241)
+. -..+++.+.
T Consensus 153 ~~--~~~~l~~~~ 163 (232)
T 3ntv_A 153 AQ--SKKFFEIYT 163 (232)
T ss_dssp SS--HHHHHHHHG
T ss_pred HH--HHHHHHHHH
Confidence 33 344556654
No 386
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=28.67 E-value=1.2e+02 Score=20.51 Aligned_cols=29 Identities=7% Similarity=0.120 Sum_probs=22.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEE
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCV 78 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~ 78 (241)
.+.|+-|++....-+..+++..||.+...
T Consensus 39 ~l~V~~dd~~a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 39 TLLIIADDPATTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 35555677777788899999999998764
No 387
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=28.66 E-value=78 Score=30.40 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=28.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
.+.+|+|+|....+...+.+.|...|+.+..+.
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~ 477 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCG 477 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 456899999998888999999999999887653
No 388
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=28.58 E-value=1.1e+02 Score=23.30 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=11.5
Q ss_pred eCCHHHHHHHHHHHhhc--CcEEEE
Q 026247 55 DDSLIDRKILENLLRVS--SYQVTC 77 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~~--g~~V~~ 77 (241)
|.+......+...+... ||.+..
T Consensus 12 D~dK~~~v~~a~~~~~ll~Gf~l~A 36 (134)
T 2xw6_A 12 DAKKEEMVAFCQRHREVLARFPLVA 36 (134)
T ss_dssp GGGHHHHHHHHHHTHHHHTTSCEEE
T ss_pred cccHHHHHHHHHHHHHHhCCCEEEE
Confidence 44444444444445555 776553
No 389
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=28.51 E-value=1.1e+02 Score=26.19 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=37.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc--Cc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS--SY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~--g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|..||=++......++.+... |+ .+. ...++.+.+.. ....||+|++|.
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~----------------------~~~~fD~Ii~d~ 189 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----------------------HKNEFDVIITDS 189 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH----------------------CTTCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh----------------------cCCCceEEEEcC
Confidence 468999999999998888887643 22 343 45666665432 245799999998
Q ss_pred CCC
Q 026247 122 CMP 124 (241)
Q Consensus 122 ~mp 124 (241)
..|
T Consensus 190 ~~~ 192 (314)
T 2b2c_A 190 SDP 192 (314)
T ss_dssp C--
T ss_pred CCC
Confidence 544
No 390
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=28.46 E-value=3e+02 Score=24.03 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 140 WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 140 ~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
...+|+|++-....... ..+.| ..++..+ +.++|...+.+++..
T Consensus 318 a~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp GTTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred HhCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 35789987633232222 35677 5677766 899999999988853
No 391
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=28.41 E-value=2.4e+02 Score=24.12 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=40.1
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHhhcCcEEEE---E----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 49 FHVLAVD-DSLI---DRKILENLLRVSSYQVTC---V----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 49 ~~VLIVD-Dd~~---~~~~l~~~L~~~g~~V~~---~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.+|.|+- |+.. ....+++.++..|.+|.. + .+....+..+ ....+|+|
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i---------------------~~~~~d~v 223 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKL---------------------RADPPAVI 223 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHH---------------------HHSCCSEE
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHH---------------------HhcCCCEE
Confidence 4665554 4432 344566667778887753 1 3555666666 45579999
Q ss_pred EEeCCCCCCCHHHHHHHHhhcC
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSS 139 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~ 139 (241)
++....+ .+...+++.++...
T Consensus 224 ~~~~~~~-~~~~~~~~~~~~~g 244 (419)
T 3h5l_A 224 VVTHFYP-QDQALFMNQFMTDP 244 (419)
T ss_dssp EECCCCH-HHHHHHHHHHTTSC
T ss_pred EEccccC-chHHHHHHHHHHcC
Confidence 9863211 23556777776443
No 392
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=28.19 E-value=1.4e+02 Score=22.20 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=43.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE--EEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ--VTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~--V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
..+|..+|-++......+..+...|.. +.. ..+..+.+... ...||+|++|.-..
T Consensus 54 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----------------------~~~fD~i~~~~~~~ 111 (177)
T 2esr_A 54 MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL----------------------TGRFDLVFLDPPYA 111 (177)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB----------------------CSCEEEEEECCSSH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh----------------------cCCCCEEEECCCCC
Confidence 358999999999999999988877753 543 56666654432 34599999984321
Q ss_pred CCCHHHHHHHHh
Q 026247 125 GMTGYDLLKRLK 136 (241)
Q Consensus 125 ~~~G~el~~~lr 136 (241)
.....++++.+.
T Consensus 112 ~~~~~~~~~~l~ 123 (177)
T 2esr_A 112 KETIVATIEALA 123 (177)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 122234555554
No 393
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=28.11 E-value=2.7e+02 Score=23.38 Aligned_cols=44 Identities=11% Similarity=0.386 Sum_probs=26.5
Q ss_pred CCcEEEEecCC--ChHHHHHHHHcCCcceEeCCCC--hHHHHHHHHHH
Q 026247 142 DVPVVVMSSEN--VPSRVTMCLEEGAEEFLLKPVR--LSDLEKLQPRL 185 (241)
Q Consensus 142 ~~pII~lsa~~--~~~~~~~a~~~Ga~dyL~KP~~--~~~L~~~i~~~ 185 (241)
++-+|+++... ..+....+++.|..=|+-||+. .++..+++..+
T Consensus 71 ~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 71 NIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred CCCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 34445444332 3566777888888777888864 55555544444
No 394
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.98 E-value=1.2e+02 Score=24.55 Aligned_cols=15 Identities=13% Similarity=0.483 Sum_probs=7.5
Q ss_pred HHHHHhhcCcEEEEE
Q 026247 64 LENLLRVSSYQVTCV 78 (241)
Q Consensus 64 l~~~L~~~g~~V~~~ 78 (241)
+++.++..||.+..+
T Consensus 32 i~~~a~~~g~~~~~~ 46 (288)
T 3gv0_A 32 ITEVLSTTQYHLVVT 46 (288)
T ss_dssp HHHHHTTSSCEEEEC
T ss_pred HHHHHHHcCCEEEEe
Confidence 334444556665543
No 395
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=27.91 E-value=2e+02 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhcCcEEEEEC
Q 026247 60 DRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 60 ~~~~l~~~L~~~g~~V~~~~ 79 (241)
+...+.+.+...||.+..+.
T Consensus 80 ~~~gi~~~a~~~g~~~~~~~ 99 (339)
T 3h5o_A 80 TLTGIETVLDAAGYQMLIGN 99 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 45566777778899887653
No 396
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=27.87 E-value=3.2e+02 Score=24.13 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=57.8
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHhhc-CcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEe
Q 026247 48 TFHVLAVDDS----LIDRKILENLLRVS-SYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTD 120 (241)
Q Consensus 48 ~~~VLIVDDd----~~~~~~l~~~L~~~-g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD 120 (241)
+..++.+|-. ....+.++.+-+.. +..|.. +.+.++|..+. +.-.|.|.+.
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~----------------------~aGaD~I~Vg 169 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLA----------------------SCGADIIKAG 169 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHH----------------------HTTCSEEEEC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHH----------------------HcCCCEEEEc
Confidence 3557777632 23333333332322 555543 77888887765 3458988884
Q ss_pred CCCCCC------------CHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 121 YCMPGM------------TGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 121 ~~mp~~------------~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.. |+. ..++.+..+... .. |||+--.-.+...+.+++.+||+....
T Consensus 170 ~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~--~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 170 IG-GGSVCSTRIKTGFGVPMLTCIQDCSRA--DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp CS-SSSCHHHHHHHCCCCCHHHHHHHHTTS--SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CC-CCcCccccccCCccHHHHHHHHHHHHh--CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 32 322 123444444321 12 888877777899999999999987643
No 397
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=27.61 E-value=2.6e+02 Score=23.16 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=37.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-------C-c--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 49 FHVLAVDDSLIDRKILENLLRVS-------S-Y--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~-------g-~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.+|..||-++.....++..++.. | . .+. ...+..+.+..+ . ..||+|
T Consensus 111 ~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~---------------------~-~~fDvV 168 (258)
T 2oyr_A 111 CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---------------------T-PRPQVV 168 (258)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC---------------------S-SCCSEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC---------------------c-ccCCEE
Confidence 37999999998877777766432 1 1 233 356665554332 2 259999
Q ss_pred EEeCCCCCCC
Q 026247 118 MTDYCMPGMT 127 (241)
Q Consensus 118 llD~~mp~~~ 127 (241)
++|-..|...
T Consensus 169 ~lDP~y~~~~ 178 (258)
T 2oyr_A 169 YLDPMFPHKQ 178 (258)
T ss_dssp EECCCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9998776644
No 398
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=27.58 E-value=1.9e+02 Score=21.85 Aligned_cols=29 Identities=21% Similarity=-0.005 Sum_probs=9.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEE
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQV 75 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V 75 (241)
...+|..+|=++......+..+...|..+
T Consensus 53 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 81 (215)
T 4dzr_A 53 PGVSVTAVDLSMDALAVARRNAERFGAVV 81 (215)
T ss_dssp TTEEEEEEECC------------------
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhCCce
Confidence 35689999999988888887777666533
No 399
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=27.51 E-value=2.7e+02 Score=23.24 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=26.6
Q ss_pred CcEEEEecCC--ChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHH
Q 026247 143 VPVVVMSSEN--VPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRL 185 (241)
Q Consensus 143 ~pII~lsa~~--~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~ 185 (241)
+-+|+++... ..+....|+++|..=|+-||+ +.++...++..+
T Consensus 63 ~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a 109 (325)
T 2ho3_A 63 FDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTA 109 (325)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH
Confidence 3444444332 356677788888888888887 455555554444
No 400
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=27.41 E-value=1.4e+02 Score=24.25 Aligned_cols=8 Identities=0% Similarity=0.364 Sum_probs=3.7
Q ss_pred EEEEeCCC
Q 026247 116 LIMTDYCM 123 (241)
Q Consensus 116 lVllD~~m 123 (241)
+|++|...
T Consensus 93 vV~~~~~~ 100 (290)
T 2rgy_A 93 MVFLNRAF 100 (290)
T ss_dssp EEEESSCC
T ss_pred EEEEcccc
Confidence 45555443
No 401
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=27.39 E-value=1.2e+02 Score=25.22 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHH
Q 026247 82 DKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCL 161 (241)
Q Consensus 82 ~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~ 161 (241)
.++++.+ .+.-.|+|.+-. --+++--.+.+.++.-...++|||+|+.....-
T Consensus 23 ~~~~~~l---------------------~~~GaD~ielG~-S~Gvt~~~~~~~v~~ir~~~~Pivlm~y~~n~i------ 74 (240)
T 1viz_A 23 DEQLEIL---------------------CESGTDAVIIGG-SDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAI------ 74 (240)
T ss_dssp HHHHHHH---------------------HTSCCSEEEECC-----CHHHHHHHHHHHTTSSSCEEEECSCGGGC------
T ss_pred HHHHHHH---------------------HHcCCCEEEECC-CCCCCHHHHHHHHHHhhCcCCCEEEecCccccc------
Q ss_pred HcCCcceEe
Q 026247 162 EEGAEEFLL 170 (241)
Q Consensus 162 ~~Ga~dyL~ 170 (241)
..|+++||.
T Consensus 75 ~~G~dg~ii 83 (240)
T 1viz_A 75 VPGFDLYFI 83 (240)
T ss_dssp CSCCSEEEE
T ss_pred cCCCCEEEE
No 402
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=27.38 E-value=88 Score=27.45 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=38.7
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhcCcEEEEEC------CH---HHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 49 FHVLAVDDSLI----DRKILENLLRVSSYQVTCVD------SG---DKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 49 ~~VLIVDDd~~----~~~~l~~~L~~~g~~V~~~~------~~---~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
-++|||-|... ....+...|+..|+.+..+. +. .++++.+ ....+|
T Consensus 32 ~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~---------------------~~~~~d 90 (386)
T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVF---------------------QNSGAD 90 (386)
T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHH---------------------HHHTCS
T ss_pred CEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH---------------------HhcCcC
Confidence 48999988755 34456667777787765443 33 3344444 345678
Q ss_pred EEEEeCCCCCCCHHHHHHHHh
Q 026247 116 LIMTDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~lr 136 (241)
+||- +.|..-+++++.+-
T Consensus 91 ~IIa---vGGGsv~D~aK~iA 108 (386)
T 1rrm_A 91 YLIA---IGGGSPQDTCKAIG 108 (386)
T ss_dssp EEEE---EESHHHHHHHHHHH
T ss_pred EEEE---eCChHHHHHHHHHH
Confidence 8773 34555566666653
No 403
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=27.37 E-value=96 Score=27.20 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred ccEEEEeCCCCCCC-HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 114 VNLIMTDYCMPGMT-GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 114 ~DlVllD~~mp~~~-G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+|++.+|....... -++.++++| ..++++||+ +-.-.+.+....+.++|+|...+
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr-~~~~~~~vi-~g~v~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVR-KRFPQHTIM-AGNVVTGEMVEELILSGADIIKV 188 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHH-HHCTTSEEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEecCCCcHHHHHHHHHHH-HhcCCCeEE-EEeCCCHHHHHHHHHhCCCEEEE
No 404
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.30 E-value=2e+02 Score=22.15 Aligned_cols=73 Identities=19% Similarity=0.072 Sum_probs=34.2
Q ss_pred CCccEEEEeC--CCCCCCHHHHHHHHhhc-CCCCCcEEEEec--CCChHHHHHHHHc-CCcceEeCCCChHHHHHHHHHH
Q 026247 112 SRVNLIMTDY--CMPGMTGYDLLKRLKVS-SWKDVPVVVMSS--ENVPSRVTMCLEE-GAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 112 ~~~DlVllD~--~mp~~~G~el~~~lr~~-~~~~~pII~lsa--~~~~~~~~~a~~~-Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
..|+++|+|- -+.+.|-. ..+.+... ......+|++|. |+ ...+...... +..=|-..+.+.+++...+.+.
T Consensus 98 ~~p~llilDEigp~~~ld~~-~~~~l~~~l~~~~~~~i~~~H~~h~-~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~~ 175 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKK-FRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLIELTPENRDVILEDILSL 175 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHH-HHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEEECCTTTTTTHHHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHH-HHHHHHHHHhcCCCeEEEEEccCCC-chHHHHHHhcCCcEEEEecCcCHHHHHHHHHHH
Confidence 4689999998 56555522 22222211 112333555552 33 3333333322 1222334455556666555444
Q ss_pred h
Q 026247 186 L 186 (241)
Q Consensus 186 l 186 (241)
+
T Consensus 176 ~ 176 (178)
T 1ye8_A 176 L 176 (178)
T ss_dssp S
T ss_pred H
Confidence 3
No 405
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=27.16 E-value=1.6e+02 Score=23.20 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=5.4
Q ss_pred HHHhhcCcEEEE
Q 026247 66 NLLRVSSYQVTC 77 (241)
Q Consensus 66 ~~L~~~g~~V~~ 77 (241)
+.++..||.+..
T Consensus 26 ~~a~~~g~~~~~ 37 (272)
T 3o74_A 26 QGARARGYQLLI 37 (272)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCEEEE
Confidence 333445555443
No 406
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=27.11 E-value=3.1e+02 Score=23.74 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
+++++.++.. .+++|||+--.-.+.+.+.+++. |++..
T Consensus 185 ~~~i~~ik~~-~~~iPVianGgI~s~eda~~~l~-GaD~V 222 (350)
T 3b0p_A 185 HDWVHRLKGD-FPQLTFVTNGGIRSLEEALFHLK-RVDGV 222 (350)
T ss_dssp HHHHHHHHHH-CTTSEEEEESSCCSHHHHHHHHT-TSSEE
T ss_pred HHHHHHHHHh-CCCCeEEEECCcCCHHHHHHHHh-CCCEE
Confidence 6788888853 24799988777778899999998 98865
No 407
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=26.93 E-value=86 Score=24.56 Aligned_cols=28 Identities=11% Similarity=-0.068 Sum_probs=19.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEE
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQV 75 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V 75 (241)
..+|.-+|=++......+..+...|..+
T Consensus 79 ~~~v~~vD~s~~~~~~a~~~~~~~~~~v 106 (230)
T 3evz_A 79 NCKVTATEVDEEFFEYARRNIERNNSNV 106 (230)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCc
Confidence 3467888888877777777776666433
No 408
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=26.91 E-value=1.9e+02 Score=21.29 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=41.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCC--CChHHHHHHHHHHhc
Q 026247 112 SRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKP--VRLSDLEKLQPRLLK 187 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP--~~~~~L~~~i~~~l~ 187 (241)
...|++|+- ..+..+.+.+. ..+|+|++-...+.....+.+..+-.+++..+ ++.++|...+.+++.
T Consensus 85 ~~ad~~I~~-----~G~~t~~Ea~~----~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~ 153 (170)
T 2o6l_A 85 PKTRAFITH-----GGANGIYEAIY----HGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIN 153 (170)
T ss_dssp TTEEEEEEC-----CCHHHHHHHHH----HTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCcCEEEEc-----CCccHHHHHHH----cCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHc
Confidence 456777762 12344555554 36898888665554444454544444666654 478899999999885
No 409
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=26.86 E-value=2.6e+02 Score=23.56 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=47.8
Q ss_pred ccEEEEEeC-CHHH---HHHHHHHHhhcCcEEEE---E----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccE
Q 026247 48 TFHVLAVDD-SLID---RKILENLLRVSSYQVTC---V----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNL 116 (241)
Q Consensus 48 ~~~VLIVDD-d~~~---~~~l~~~L~~~g~~V~~---~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 116 (241)
..+|.++-+ +..- ...+.+.++..|..+.. + .+....+..+ ....||+
T Consensus 143 ~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l---------------------~~~~~da 201 (392)
T 3lkb_A 143 GAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRF---------------------EQAGVEY 201 (392)
T ss_dssp TCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHH---------------------HHTTCCE
T ss_pred CCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHH---------------------HhcCCCE
Confidence 346666644 4332 23566777778877642 1 2445555555 3457999
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHH
Q 026247 117 IMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSR 156 (241)
Q Consensus 117 VllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~ 156 (241)
|++.. .+.+...+++.++... ..+|++..........
T Consensus 202 v~~~~--~~~~a~~~~~~~~~~g-~~~~~~~~~~~~~~~~ 238 (392)
T 3lkb_A 202 VVHQN--VAGPVANILKDAKRLG-LKMRHLGAHYTGGPDL 238 (392)
T ss_dssp EEEES--CHHHHHHHHHHHHHTT-CCCEEEECGGGCSHHH
T ss_pred EEEec--CcchHHHHHHHHHHcC-CCceEEEecCcccHHH
Confidence 99754 2344566777777543 3567665443333333
No 410
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=26.82 E-value=1.8e+02 Score=24.65 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=36.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh--cCc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRV--SSY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~--~g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|..||=++......++.+.. .|+ .+. ...++.+.+.. ....||+|++|.
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~----------------------~~~~fD~Ii~d~ 176 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----------------------NQDAFDVIITDS 176 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT----------------------CSSCEEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh----------------------CCCCceEEEECC
Confidence 45899999999999888887754 122 233 35666654432 245799999997
Q ss_pred CCC
Q 026247 122 CMP 124 (241)
Q Consensus 122 ~mp 124 (241)
..|
T Consensus 177 ~~~ 179 (304)
T 2o07_A 177 SDP 179 (304)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 411
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=26.69 E-value=1.8e+02 Score=23.30 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
+++++.++. ...+|+++.-.-.+.+.+..+++.||+..+.-
T Consensus 63 ~~~i~~i~~--~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 63 LELVEKVAE--QIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp HHHHHHHHT--TCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHH--hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 566677773 24789998877777888999999999987654
No 412
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=26.64 E-value=64 Score=28.57 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=26.7
Q ss_pred hHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 154 PSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 154 ~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
.+....|+++|..=++-||++.++..+++..+.
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~ 116 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQ 116 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHH
Confidence 467888899999999999999888877666554
No 413
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=26.59 E-value=67 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=39.4
Q ss_pred HHHHHHHHhhcCCCCCcEE--EEecCCChHHHHHHHHcCCcceEeC-----CCChHHHHHHHHHHhc
Q 026247 128 GYDLLKRLKVSSWKDVPVV--VMSSENVPSRVTMCLEEGAEEFLLK-----PVRLSDLEKLQPRLLK 187 (241)
Q Consensus 128 G~el~~~lr~~~~~~~pII--~lsa~~~~~~~~~a~~~Ga~dyL~K-----P~~~~~L~~~i~~~l~ 187 (241)
++++++.++.. ..+||| ....-...+.+.++++.|+++++.= .-++......+...+.
T Consensus 228 ~lell~~i~~~--~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~ 292 (330)
T 2yzr_A 228 LYEVLLEVKKL--GRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATY 292 (330)
T ss_dssp HHHHHHHHHHH--TSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHH
Confidence 56888888853 367886 3444446899999999999999643 3455555555555553
No 414
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=26.44 E-value=1.2e+02 Score=24.56 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY 73 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~ 73 (241)
.-+|.-||.|+......+..|+..|+
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 45899999999999999999998886
No 415
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.43 E-value=1.8e+02 Score=20.94 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=29.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
..-|+|-|.+....+.+..-.++.||+|.++.+.++....+
T Consensus 77 qvliiiydqdqnrleefsrevrrrgfevrtvtspddfkksl 117 (134)
T 2l69_A 77 QVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKSL 117 (134)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHH
T ss_pred eEEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHHH
Confidence 34456667777666777777778899999999888765544
No 416
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=26.17 E-value=1.4e+02 Score=20.50 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=24.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEEC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~ 79 (241)
.+.|+-||+....-+..+++..||.+....
T Consensus 31 ~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 31 VVTVLVDNDISRQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 466677888888999999999999987653
No 417
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=25.94 E-value=1.3e+02 Score=25.46 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 141 KDVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 141 ~~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
+++-+|+++.. ...+....|+++|..=|+-||+ +.++..+++..+-
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 120 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEA 120 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHH
T ss_pred CCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555443 3467788999999999999997 4566666555543
No 418
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=25.73 E-value=1.6e+02 Score=26.71 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC-CHHHHHHHHhhcCCCCCcEEEEecCCChHHH
Q 026247 79 DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM-TGYDLLKRLKVSSWKDVPVVVMSSENVPSRV 157 (241)
Q Consensus 79 ~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~-~G~el~~~lr~~~~~~~pII~lsa~~~~~~~ 157 (241)
.+..+.+..+ ....+|.|.++...... .-++.+++++ ...+++||++ -.-...+..
T Consensus 236 ~~~~~~a~~l---------------------~~aGvd~v~i~~~~G~~~~~~e~i~~i~-~~~p~~pvi~-g~~~t~e~a 292 (494)
T 1vrd_A 236 PETMERVEKL---------------------VKAGVDVIVIDTAHGHSRRVIETLEMIK-ADYPDLPVVA-GNVATPEGT 292 (494)
T ss_dssp TTHHHHHHHH---------------------HHTTCSEEEECCSCCSSHHHHHHHHHHH-HHCTTSCEEE-EEECSHHHH
T ss_pred HhHHHHHHHH---------------------HHhCCCEEEEEecCCchHHHHHHHHHHH-HHCCCceEEe-CCcCCHHHH
Q ss_pred HHHHHcCCcceEe
Q 026247 158 TMCLEEGAEEFLL 170 (241)
Q Consensus 158 ~~a~~~Ga~dyL~ 170 (241)
..+.++|++.+..
T Consensus 293 ~~l~~~G~d~I~v 305 (494)
T 1vrd_A 293 EALIKAGADAVKV 305 (494)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHcCCCEEEE
No 419
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.71 E-value=2.1e+02 Score=26.07 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=9.5
Q ss_pred CCCccEEEEeCC
Q 026247 111 ESRVNLIMTDYC 122 (241)
Q Consensus 111 ~~~~DlVllD~~ 122 (241)
...||+||+|.-
T Consensus 180 ~~~~DvVIIDTa 191 (443)
T 3dm5_A 180 SKGVDIIIVDTA 191 (443)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEECC
Confidence 456999999963
No 420
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=25.48 E-value=2.3e+02 Score=21.66 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=37.5
Q ss_pred HHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 131 LLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 131 l~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
+++.++. ..+++.++|+.........+...|.++|+.......+....+.+.+
T Consensus 54 ~l~~L~~---~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~~ 106 (189)
T 3mn1_A 54 GIKMLIA---SGVTTAIISGRKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAEL 106 (189)
T ss_dssp HHHHHHH---TTCEEEEECSSCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHHH
T ss_pred HHHHHHH---CCCEEEEEECcChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHHc
Confidence 6777774 3579999999888777777788999999876655444444444433
No 421
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=25.44 E-value=2.6e+02 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=9.8
Q ss_pred HHHHHHHhhcCcEEEEE
Q 026247 62 KILENLLRVSSYQVTCV 78 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~ 78 (241)
..+++.++..||.+..+
T Consensus 35 ~gi~~~a~~~g~~~~~~ 51 (298)
T 3tb6_A 35 RGIESYLSEQGYSMLLT 51 (298)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 34555555667766554
No 422
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=25.43 E-value=1e+02 Score=27.33 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceE------eC-CCChHHHHHHHHHHhc
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFL------LK-PVRLSDLEKLQPRLLK 187 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL------~K-P~~~~~L~~~i~~~l~ 187 (241)
+++++.++......+|||..-.-.+.+++.+++.+||+... .+ |.-..++...+.+++.
T Consensus 285 ~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l~~~m~ 350 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLK 350 (367)
T ss_dssp HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHHHHHHH
Confidence 36788887554347999999998899999999999998653 22 5445555555555553
No 423
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=25.36 E-value=2.7e+02 Score=23.34 Aligned_cols=77 Identities=10% Similarity=0.006 Sum_probs=48.2
Q ss_pred CCCccEEEEeC-CC-CCCCHHHHHHHHhhcCCCCCcEEEEecCCC----hHHHHHHHHcCCcceEeCCCChHHHHHHHHH
Q 026247 111 ESRVNLIMTDY-CM-PGMTGYDLLKRLKVSSWKDVPVVVMSSENV----PSRVTMCLEEGAEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 111 ~~~~DlVllD~-~m-p~~~G~el~~~lr~~~~~~~pII~lsa~~~----~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~ 184 (241)
...+-+|++|- .+ ...++.+.+...-+...+++.+|+.+...+ ......++..-+.-|-.+|.+..++...+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 34567888885 34 455666644443323335666766665433 2345556655556677789999999988888
Q ss_pred Hhc
Q 026247 185 LLK 187 (241)
Q Consensus 185 ~l~ 187 (241)
.+.
T Consensus 154 ~~~ 156 (343)
T 1jr3_D 154 RAK 156 (343)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 424
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=25.26 E-value=3.4e+02 Score=23.62 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=55.1
Q ss_pred EEEEEeCCHHHH----HHHHHHHhhcCcE--EEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 50 HVLAVDDSLIDR----KILENLLRVSSYQ--VTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 50 ~VLIVDDd~~~~----~~l~~~L~~~g~~--V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
-|||-|.+-... ..++.+-+..++. ...+.+.+++.+.+. ...|+|.+|-
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~----------------------aGaD~I~LDn-- 259 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAIS----------------------AGADIIMLDN-- 259 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHH----------------------TTCSEEEEES--
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHH----------------------cCCCEEEECC--
Confidence 467766653322 2232322233432 346899999988872 3479999996
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
|+--++ +++...-.+. ..|..|+--+.+.+.+..+.|+|.|
T Consensus 260 --~~~~~l-~~av~~l~~~-v~ieaSGGIt~~~I~~~a~tGVD~i 300 (320)
T 3paj_A 260 --FSLEMM-REAVKINAGR-AALENSGNITLDNLKECAETGVDYI 300 (320)
T ss_dssp --CCHHHH-HHHHHHHTTS-SEEEEESSCCHHHHHHHHTTTCSEE
T ss_pred --CCHHHH-HHHHHHhCCC-CeEEEECCCCHHHHHHHHHcCCCEE
Confidence 343333 3333221133 3556788888999999999999654
No 425
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=25.22 E-value=2.8e+02 Score=22.77 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcCcEEEEEC
Q 026247 61 RKILENLLRVSSYQVTCVD 79 (241)
Q Consensus 61 ~~~l~~~L~~~g~~V~~~~ 79 (241)
...+.+.+...||.+..+.
T Consensus 79 ~~gi~~~a~~~g~~~~~~~ 97 (332)
T 2hsg_A 79 ARGIEDIATMYKYNIILSN 97 (332)
T ss_dssp HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEe
Confidence 3445666667899876543
No 426
>3tlq_A Regulatory protein YDIV; anti-FLHD4C2 factor, repress motility, transcription; 1.91A {Escherichia coli}
Probab=25.17 E-value=8.4 Score=31.82 Aligned_cols=88 Identities=8% Similarity=0.057 Sum_probs=58.7
Q ss_pred cEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC-----CCCHHHHHHHHhhc-CCCCCcEE
Q 026247 73 YQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP-----GMTGYDLLKRLKVS-SWKDVPVV 146 (241)
Q Consensus 73 ~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp-----~~~G~el~~~lr~~-~~~~~pII 146 (241)
+-+.-+++|-..+.++ ..-++|.|=+|-.+- +.....+++.+-.. ..-++.+
T Consensus 144 ialDDFGtG~ssl~~L---------------------~~l~~d~iKID~s~v~~~~~~~~~~~iv~~ii~~a~~l~~~v- 201 (242)
T 3tlq_A 144 LVLGNLGAGNSTMKAV---------------------FDGLFTRVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCI- 201 (242)
T ss_dssp EEEEEETSSSSCSHHH---------------------HTTCCSEEEECHHHHHHHHHSGGGHHHHHHHHHHHTTTCSEE-
T ss_pred EEEECCCCCcccHHHH---------------------HhCCCeEEEEcHHHHhhhccChhHHHHHHHHHHHHHHcCCEE-
Confidence 4456789988888888 567899999985431 12233444544322 2234444
Q ss_pred EEecCCChHHHHHHHHcCCc---ceEeCCCChHHHHHHH
Q 026247 147 VMSSENVPSRVTMCLEEGAE---EFLLKPVRLSDLEKLQ 182 (241)
Q Consensus 147 ~lsa~~~~~~~~~a~~~Ga~---dyL~KP~~~~~L~~~i 182 (241)
+.-+-.+.+....+.+.|++ ||+.+|...+++...+
T Consensus 202 vAEGVEt~~q~~~l~~lG~~~~QGy~f~P~p~~el~~ll 240 (242)
T 3tlq_A 202 IAGGIDTAEILAQITPFDFHALQGCLWPAVPINQITTLV 240 (242)
T ss_dssp EECCCCSHHHHHHHGGGCCSEECSTTSCCEEGGGGGGGS
T ss_pred EEEeCCcHHHHHHHHHcCCCEEeCCCCCCCCHHHHHHHh
Confidence 35566678888888999987 7777999888876543
No 427
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=25.10 E-value=2.3e+02 Score=21.57 Aligned_cols=76 Identities=8% Similarity=0.014 Sum_probs=45.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc-EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY-QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
..+|..+|-++......++.+...|. .+. ...+..+.+. ....||+|+++..++
T Consensus 64 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------------------~~~~~D~i~~~~~~~- 119 (204)
T 3e05_A 64 NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-----------------------DLPDPDRVFIGGSGG- 119 (204)
T ss_dssp TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-----------------------TSCCCSEEEESCCTT-
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-----------------------cCCCCCEEEECCCCc-
Confidence 45788888888888888887776654 232 2333322211 225699999997665
Q ss_pred CCHHHHHHHHhhcCCCCCcEEEE
Q 026247 126 MTGYDLLKRLKVSSWKDVPVVVM 148 (241)
Q Consensus 126 ~~G~el~~~lr~~~~~~~pII~l 148 (241)
+-..+++.+...-.+.-.+++.
T Consensus 120 -~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 120 -MLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp -CHHHHHHHHHHHCCTTCEEEEE
T ss_pred -CHHHHHHHHHHhcCCCeEEEEE
Confidence 4445666665433344444444
No 428
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=25.09 E-value=16 Score=29.45 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=52.5
Q ss_pred HHHHHHhhcCcEEEE--ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC---CCCCH---HHHHHH
Q 026247 63 ILENLLRVSSYQVTC--VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM---PGMTG---YDLLKR 134 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~--~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m---p~~~G---~el~~~ 134 (241)
..-+.|+..|+.+.. +++|-..+.++ ..-.||++-+|..+ .+.+. ..+++.
T Consensus 132 ~~l~~Lr~~G~~ialDDfG~g~ssl~~L---------------------~~l~~~~~ki~~~~~~~~~~~~~~~~~~~~~ 190 (235)
T 3kzp_A 132 NKIKVIHGLGYHIAIDDVSCGLNSLERV---------------------MSYLPYIIEIKFSLIHFKNIPLEDLLLFIKA 190 (235)
T ss_dssp HHHHHHHHTTCEEEECSTTSTTCCHHHH---------------------HHHGGGCSEEEEEGGGGTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCCchhHHHH---------------------HhccCcceEEeccHHHhhcCCcHHHHHHHHH
Confidence 344557778988764 66776666766 23346666666655 22232 233444
Q ss_pred Hhhc-CCCCCcEEEEecCCChHHHHHHHHcCCc---c-eEeCCC
Q 026247 135 LKVS-SWKDVPVVVMSSENVPSRVTMCLEEGAE---E-FLLKPV 173 (241)
Q Consensus 135 lr~~-~~~~~pII~lsa~~~~~~~~~a~~~Ga~---d-yL~KP~ 173 (241)
+... ..-++.+| ..+-.+.+....+.+.|++ | |+.||.
T Consensus 191 i~~~a~~lg~~vi-aeGVEt~~~~~~l~~~G~~~~QG~~~~~P~ 233 (235)
T 3kzp_A 191 WANFAQKNKLDFV-VEGIETKETMTLLESHGVSIFQGYLVNKPF 233 (235)
T ss_dssp HHHHHHHTTCEEE-EEEECSTHHHHHHHHTTCCSCEEEECCCCE
T ss_pred HHHHHHHcCCEEE-EEEecCHHHHHHHHHcCCCEeeeccccCCC
Confidence 4221 11345554 5666778888889999987 3 366664
No 429
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=25.06 E-value=2.3e+02 Score=24.44 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=44.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc--Cc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVS--SY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~--g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|..||=++......++.+... |+ .+. ...++.+.+..+ ....||+|++|.
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~---------------------~~~~fDlIi~d~ 202 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA---------------------AEGSYDAVIVDS 202 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS---------------------CTTCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc---------------------cCCCccEEEECC
Confidence 468999999999998888877542 22 233 456766654322 245799999997
Q ss_pred CCCCC--CH---HHHHHHHhh
Q 026247 122 CMPGM--TG---YDLLKRLKV 137 (241)
Q Consensus 122 ~mp~~--~G---~el~~~lr~ 137 (241)
..|.. .+ .++++.++.
T Consensus 203 ~~p~~~~~~l~~~~~l~~~~~ 223 (334)
T 1xj5_A 203 SDPIGPAKELFEKPFFQSVAR 223 (334)
T ss_dssp CCTTSGGGGGGSHHHHHHHHH
T ss_pred CCccCcchhhhHHHHHHHHHH
Confidence 65432 11 355555553
No 430
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=24.95 E-value=1.5e+02 Score=27.08 Aligned_cols=52 Identities=10% Similarity=-0.046 Sum_probs=39.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcE-EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQ-VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~-V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
-+|+-+|=++.....+++-++..|.. |. ...++.+..... ...||+||+|.-
T Consensus 131 g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~----------------------~~~FD~Il~DaP 184 (456)
T 3m4x_A 131 GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF----------------------SGFFDRIVVDAP 184 (456)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH----------------------TTCEEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc----------------------cccCCEEEECCC
Confidence 47999999999999999999888864 44 356776654443 357999999963
No 431
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=24.95 E-value=1.7e+02 Score=25.74 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCccEEEEeCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
+..+|+|.+|.......+ .+.+++++... ++|||+-. -...+....+.++|++....
T Consensus 115 eaGad~I~ld~a~G~~~~~~~~i~~i~~~~--~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 115 EAGVDVIVLDSAHGHSLNIIRTLKEIKSKM--NIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HTTCSEEEECCSCCSBHHHHHHHHHHHHHC--CCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HcCcCeEEEeCCCCCcHHHHHHHHHHHHhc--CCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 456899999876433322 46777777432 67877522 24578888999999987765
No 432
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=24.94 E-value=1.4e+02 Score=25.99 Aligned_cols=60 Identities=5% Similarity=0.001 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHhhcCCCCCcEEEEe--cCCChHHHHHHHHcCCcceEeCCCCh---HHHHHHHHHH
Q 026247 124 PGMTGYDLLKRLKVSSWKDVPVVVMS--SENVPSRVTMCLEEGAEEFLLKPVRL---SDLEKLQPRL 185 (241)
Q Consensus 124 p~~~G~el~~~lr~~~~~~~pII~ls--a~~~~~~~~~a~~~Ga~dyL~KP~~~---~~L~~~i~~~ 185 (241)
+..+-+++++.++. ..+++++++++ +......+.++.++|++.+.. ++.. +.....+..+
T Consensus 65 ~~~~~~e~l~~i~~-~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I-~~~~s~~~~~~~~i~~a 129 (345)
T 1nvm_A 65 GRHTDLEYIEAVAG-EISHAQIATLLLPGIGSVHDLKNAYQAGARVVRV-ATHCTEADVSKQHIEYA 129 (345)
T ss_dssp CSSCHHHHHHHHHT-TCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEE-EEETTCGGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHh-hCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEE-EEeccHHHHHHHHHHHH
Confidence 33567889988874 34688998885 334577888999999998755 2333 3444444444
No 433
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=24.88 E-value=2.6e+02 Score=22.16 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=38.8
Q ss_pred CCHHHHH---HHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH-
Q 026247 56 DSLIDRK---ILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG- 128 (241)
Q Consensus 56 Dd~~~~~---~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G- 128 (241)
+++.... .+++.++..||.+..+. +...-.+.+..+ ....+|-||+.-.. .+.
T Consensus 12 ~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l------------------~~~~vdgiIi~~~~--~~~~ 71 (271)
T 2dri_A 12 NNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL------------------TVRGTKILLINPTD--SDAV 71 (271)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH------------------TTTTEEEEEECCSS--TTTT
T ss_pred CCHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHH------------------HHcCCCEEEEeCCC--hHHH
Confidence 3555444 45566677899887653 333222333211 45678988874322 222
Q ss_pred HHHHHHHhhcCCCCCcEEEEec
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa 150 (241)
.+.++.++. ..+|+|++-.
T Consensus 72 ~~~~~~~~~---~~iPvV~i~~ 90 (271)
T 2dri_A 72 GNAVKMANQ---ANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHH---TTCCEEEESS
T ss_pred HHHHHHHHH---CCCcEEEecC
Confidence 245566653 3578887743
No 434
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=24.73 E-value=2.2e+02 Score=21.94 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=37.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+ +|-++..... ...|...+..+..+.+..++++.| ...+.|+++.|.
T Consensus 105 L~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L---------------------~~GrvDa~i~~~ 153 (232)
T 3i6v_A 105 LSG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAV---------------------RNGEADAVFADR 153 (232)
T ss_dssp TTS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHH---------------------HTTSSSEEEEEH
T ss_pred hCC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHH---------------------HcCCcCEEEECh
Confidence 345 7888777653 233444488999999999999999 678899999985
No 435
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=24.71 E-value=2.4e+02 Score=24.28 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=28.3
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 45 QQETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 45 ~~~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
+..++||+|+-- -.+...+...|.. .++|+.+.-..+.++.+
T Consensus 13 ~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~ 54 (365)
T 3abi_A 13 EGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKV 54 (365)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred cCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence 345679999987 7777777788864 57887776555555555
No 436
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=24.67 E-value=2.1e+02 Score=24.29 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHhcC
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLLKS 188 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l~~ 188 (241)
..+++.+. ..+|+|++-...+.....+.+..+-.+++..+- +.+.|...+.+++..
T Consensus 311 ~t~~Ea~~----~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~ 368 (398)
T 4fzr_A 311 GTTLTCLS----EGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD 368 (398)
T ss_dssp HHHHHHHH----TTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHC
T ss_pred HHHHHHHH----hCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC
Confidence 34444444 478998875544444444444444456776654 778899999998854
No 437
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=24.62 E-value=2.2e+02 Score=24.50 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=56.5
Q ss_pred CcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC--CCC-CCHHHHHHHHhhcCCCCCcEEE
Q 026247 72 SYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC--MPG-MTGYDLLKRLKVSSWKDVPVVV 147 (241)
Q Consensus 72 g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~--mp~-~~G~el~~~lr~~~~~~~pII~ 147 (241)
.+.+. |+.+.+.+..... . --|-|=++-. .++ ..++.+++.++.. .++||.+
T Consensus 39 ~~~lEvc~~s~~~a~~A~~---------------------g-GAdRIELc~~l~~GGlTPS~g~i~~a~~~--~~ipV~v 94 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAER---------------------G-GADRIELCSGLSEGGTTPSMGVLQVVKQS--VQIPVFV 94 (287)
T ss_dssp CSEEEEEESSHHHHHHHHH---------------------H-TCSEEEECBCGGGTCBCCCHHHHHHHHTT--CCSCEEE
T ss_pred CceEEEEeCCHHHHHHHHH---------------------h-CCCEEEECCCCCCCCCCCCHHHHHHHHHh--cCCCeEE
Confidence 45554 6888888888762 1 1233322223 344 3367888888743 4699888
Q ss_pred EecCCCh-------------HHHHHHHHcCCcceEeCC------CChHHHHHHHHHH
Q 026247 148 MSSENVP-------------SRVTMCLEEGAEEFLLKP------VRLSDLEKLQPRL 185 (241)
Q Consensus 148 lsa~~~~-------------~~~~~a~~~Ga~dyL~KP------~~~~~L~~~i~~~ 185 (241)
|.-.-.. .++..+.++|++++..=- ++.+.+..++...
T Consensus 95 MIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a 151 (287)
T 3iwp_A 95 MIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAIC 151 (287)
T ss_dssp ECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH
T ss_pred EEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc
Confidence 8655433 578889999999986652 4555666655543
No 438
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=24.60 E-value=3.4e+02 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHH
Q 026247 141 KDVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRL 185 (241)
Q Consensus 141 ~~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~ 185 (241)
+++-+|+++.. ...+....|+++|..=|+-||+ +.++...++..+
T Consensus 95 ~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a 143 (412)
T 4gqa_A 95 PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAA 143 (412)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHH
Confidence 34445555443 3467888999999999999997 555655554444
No 439
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=24.51 E-value=93 Score=23.70 Aligned_cols=53 Identities=17% Similarity=0.058 Sum_probs=36.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc--EEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY--QVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCM 123 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~--~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~m 123 (241)
.+|..+|-++......++.+...|. .+.. ..+..+.... ....||+|+++...
T Consensus 48 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----------------------~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 48 GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY----------------------IDCPVKAVMFNLGY 103 (197)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT----------------------CCSCEEEEEEEESB
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh----------------------ccCCceEEEEcCCc
Confidence 3899999999999999988887765 3443 3444332211 23579999999754
No 440
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=24.43 E-value=2.1e+02 Score=23.65 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=61.5
Q ss_pred eCCHHHHHHHHHHHhh-cCcEEEE------E--CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC
Q 026247 55 DDSLIDRKILENLLRV-SSYQVTC------V--DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG 125 (241)
Q Consensus 55 DDd~~~~~~l~~~L~~-~g~~V~~------~--~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~ 125 (241)
.|..+....++.++.. .|..|+. + .+..+|++.| .+..++=||+.=.-+.
T Consensus 100 ~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L---------------------~~lGv~rILTSG~~~~ 158 (224)
T 2bdq_A 100 SNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQL---------------------VALGFTRILLHGSSNG 158 (224)
T ss_dssp TTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHH---------------------HHTTCCEEEECSCSSC
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHH---------------------HHcCCCEEECCCCCCC
Confidence 4556667777777753 3566664 5 7888999988 4456999998755444
Q ss_pred ---CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHH-HcCCcceEeC
Q 026247 126 ---MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCL-EEGAEEFLLK 171 (241)
Q Consensus 126 ---~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~-~~Ga~dyL~K 171 (241)
.+|++.++.+...... -..|+.-+-...+.+.... ..|+..|-..
T Consensus 159 ~~a~~g~~~L~~Lv~~a~~-ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 159 EPIIENIKHIKALVEYANN-RIEIMVGGGVTAENYQYICQETGVKQAHGT 207 (224)
T ss_dssp CCGGGGHHHHHHHHHHHTT-SSEEEECSSCCTTTHHHHHHHHTCCEEEET
T ss_pred CcHHHHHHHHHHHHHhhCC-CeEEEeCCCCCHHHHHHHHHhhCCCEEccc
Confidence 7899999998643222 2334443434455555555 5799888543
No 441
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=24.41 E-value=86 Score=25.69 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=45.2
Q ss_pred CCccEEEEeCCC----CCC-CHHHHHHHHhhcCCCCCcEEE--EecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHH
Q 026247 112 SRVNLIMTDYCM----PGM-TGYDLLKRLKVSSWKDVPVVV--MSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 112 ~~~DlVllD~~m----p~~-~G~el~~~lr~~~~~~~pII~--lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~ 184 (241)
...|.+=+|+.. |.. -|.++++.||....++.|+.+ +.... ..++..+.++|++.+..-.....++...+..
T Consensus 29 ~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p-~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~ 107 (228)
T 3ovp_A 29 SGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKP-EQWVKPMAVAGANQYTFHLEATENPGALIKD 107 (228)
T ss_dssp TTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCG-GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHH
T ss_pred cCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCH-HHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 334555555432 332 388999999854114667653 44433 4567888999998777765444455556665
Q ss_pred Hhc
Q 026247 185 LLK 187 (241)
Q Consensus 185 ~l~ 187 (241)
+..
T Consensus 108 i~~ 110 (228)
T 3ovp_A 108 IRE 110 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 442
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=24.40 E-value=3e+02 Score=22.68 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=53.1
Q ss_pred HhhcCcEEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCC-C-CHHHHHHHHhhcCCCCCc
Q 026247 68 LRVSSYQVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPG-M-TGYDLLKRLKVSSWKDVP 144 (241)
Q Consensus 68 L~~~g~~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~-~-~G~el~~~lr~~~~~~~p 144 (241)
....|.-+. .+.+.+|+...+ +..+|+|=+ .|. . .|.++++.++. ..+++|
T Consensus 123 ~~~~gi~~ipGv~TptEi~~A~----------------------~~Gad~vK~---FPa~~~gG~~~lkal~~-p~p~ip 176 (232)
T 4e38_A 123 CQEIGIDIVPGVNNPSTVEAAL----------------------EMGLTTLKF---FPAEASGGISMVKSLVG-PYGDIR 176 (232)
T ss_dssp HHHHTCEEECEECSHHHHHHHH----------------------HTTCCEEEE---CSTTTTTHHHHHHHHHT-TCTTCE
T ss_pred HHHcCCCEEcCCCCHHHHHHHH----------------------HcCCCEEEE---CcCccccCHHHHHHHHH-HhcCCC
Confidence 444565543 577999998887 234777765 563 3 38999999984 457889
Q ss_pred EEEEecCCChHHHHHHHHcCCcceE
Q 026247 145 VVVMSSENVPSRVTMCLEEGAEEFL 169 (241)
Q Consensus 145 II~lsa~~~~~~~~~a~~~Ga~dyL 169 (241)
++. |+--+.+...+.+++|+....
T Consensus 177 ~~p-tGGI~~~n~~~~l~aGa~~~v 200 (232)
T 4e38_A 177 LMP-TGGITPSNIDNYLAIPQVLAC 200 (232)
T ss_dssp EEE-BSSCCTTTHHHHHTSTTBCCE
T ss_pred eee-EcCCCHHHHHHHHHCCCeEEE
Confidence 875 555567888999999987543
No 443
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=24.39 E-value=1.9e+02 Score=23.04 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=23.5
Q ss_pred cCCCccEEEEeCC----CC-CCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHH
Q 026247 110 EESRVNLIMTDYC----MP-GMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTM 159 (241)
Q Consensus 110 ~~~~~DlVllD~~----mp-~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~ 159 (241)
....+|+||.=.. .| ..||+.+.+.--. -.+|+ +|+-+.......
T Consensus 95 ~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~---~~IP~--~TnlatA~A~v~ 144 (178)
T 1vmd_A 95 AEGKIDVLIFFWDPLEPQAHDVDVKALIRIATV---YNIPV--AITRSTADFLIS 144 (178)
T ss_dssp HTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHH---TTCCE--ESSHHHHHHHHH
T ss_pred HCCCccEEEEccCccCCCcccccHHHHHHHHHH---cCCCE--EeCHHHHHHHHH
Confidence 4567777776544 45 5677766544321 24555 444333333333
No 444
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=24.27 E-value=2.3e+02 Score=23.75 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe--CCCChHHHHHHHHHHh
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL--KPVRLSDLEKLQPRLL 186 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~--KP~~~~~L~~~i~~~l 186 (241)
++.++.+|.. .++||+.---.-+...+..|..+||+..+. .-.+.+++...+....
T Consensus 102 ~~~l~~ir~~--v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRAS--VSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHH--CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 6778888754 468998554333444588999999999976 4455566665555443
No 445
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=24.09 E-value=1.8e+02 Score=20.08 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhcCcEEEE---ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHH
Q 026247 59 IDRKILENLLRVSSYQVTC---VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRL 135 (241)
Q Consensus 59 ~~~~~l~~~L~~~g~~V~~---~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~l 135 (241)
.....+.+++......+.+ |.....+..+|. ......-..|+..-.-++.++...+
T Consensus 7 ~~~~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~---------------------~~~i~~~~~di~~~~~~~~~~~~~l 65 (113)
T 3rhb_A 7 RMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFK---------------------RLGVQPLVVELDQLGPQGPQLQKVL 65 (113)
T ss_dssp HHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHH---------------------HTTCCCEEEEGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEECCCChhHHHHHHHHH---------------------HcCCCCeEEEeecCCCChHHHHHHH
Confidence 3455666777766655543 556777777773 2223334556554323466666666
Q ss_pred hhc-CCCCCcEEEEec
Q 026247 136 KVS-SWKDVPVVVMSS 150 (241)
Q Consensus 136 r~~-~~~~~pII~lsa 150 (241)
+.. ....+|.|++-+
T Consensus 66 ~~~~g~~tvP~ifi~g 81 (113)
T 3rhb_A 66 ERLTGQHTVPNVFVCG 81 (113)
T ss_dssp HHHHSCCSSCEEEETT
T ss_pred HHHhCCCCcCEEEECC
Confidence 543 567899997744
No 446
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=23.95 E-value=2.1e+02 Score=23.34 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=38.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCC--hHH----HHHHHHcCCcceEe
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENV--PSR----VTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~--~~~----~~~a~~~Ga~dyL~ 170 (241)
+...|+|.+.. + -|++.+++++.. ..+||++..+-.. .+. ...++++|++++..
T Consensus 177 ~~Gad~i~~~~--~--~~~~~l~~i~~~--~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 177 ELGADIVKTSY--T--GDIDSFRDVVKG--CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp HTTCSEEEECC--C--SSHHHHHHHHHH--CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred HcCCCEEEECC--C--CCHHHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 44578888874 2 468888888743 2689998876653 334 66777899998743
No 447
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=23.90 E-value=1.1e+02 Score=25.48 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=63.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEE--------ECCHH-HHHHHHhhhcccccCCCCCCCcccccccC-CCccE
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTC--------VDSGD-KALEYLGLIDNLENNSNASPSTLSTKKEE-SRVNL 116 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~--------~~~~~-eal~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl 116 (241)
.+.+||++-.+. -+..|.+.|+..|+.|.. ..... ...+.+ .. ..+|+
T Consensus 156 ~g~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l---------------------~~~~~~d~ 213 (286)
T 1jr2_A 156 SALPLLFPCGNL-KREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYY---------------------SQQGVPAS 213 (286)
T ss_dssp CSSCEEEEESCG-GGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHH---------------------HHHCSCSE
T ss_pred CCCeEEEECChh-hHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHH---------------------HhCCCCCE
Confidence 356899986654 356778889888876542 22233 233344 22 56888
Q ss_pred EEEeCCCCCCCHHH-HHHHHhh---cCCCCCcEEEEecCCChHHHHHHHHcCCc-ceEeCCCChHHHHHHHHHHh
Q 026247 117 IMTDYCMPGMTGYD-LLKRLKV---SSWKDVPVVVMSSENVPSRVTMCLEEGAE-EFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 117 VllD~~mp~~~G~e-l~~~lr~---~~~~~~pII~lsa~~~~~~~~~a~~~Ga~-dyL~KP~~~~~L~~~i~~~l 186 (241)
|++=- .++.+ +++.+.. .....++++.+. ......+.+.|.. +++.+..+.+.|...+...+
T Consensus 214 v~ftS----~~~v~~f~~~~~~~~~~~l~~~~i~aIG----~~Ta~~l~~~G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 214 ITFFS----PSGLTYSLKHIQELSGDNIDQIKFAAIG----PTTARALAAQGLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp EEESS----HHHHHHHHHHHHHHHGGGGGGSEEEESS----HHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHHT
T ss_pred EEEEC----hHHHHHHHHHHhhhccccccCCEEEEEC----HHHHHHHHHcCCCceEecCCCCHHHHHHHHHHHH
Confidence 87631 22332 2222321 112345555443 4556666778876 45677778999988887775
No 448
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=23.74 E-value=1.3e+02 Score=23.32 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=45.5
Q ss_pred CccEEEEeCCCCC-CCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCC---cceEeCCCChHHHHHHHHHHhc
Q 026247 113 RVNLIMTDYCMPG-MTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGA---EEFLLKPVRLSDLEKLQPRLLK 187 (241)
Q Consensus 113 ~~DlVllD~~mp~-~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga---~dyL~KP~~~~~L~~~i~~~l~ 187 (241)
.-|+||..+.-|+ ..++|+--... ...||+.+...... ....++-.|. ..|..+.+...+|...+.+.+.
T Consensus 68 ~aD~vvA~l~~~d~Gt~~EiG~A~a----lgkPV~~l~~~~~~-~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 68 QADVVVAEVTQPSLGVGYELGRAVA----LGKPILCLFRPQSG-RVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp HCSEEEEECSSCCHHHHHHHHHHHH----TTCCEEEEECGGGS-CCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC
T ss_pred HCCEEEEeCCCCCCCHHHHHHHHHH----cCCeEEEEEeCCcc-chhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHH
Confidence 4689999888665 33667655443 36799987663321 1122233343 4588888888999999988874
No 449
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=23.68 E-value=2.1e+02 Score=24.96 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc---EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY---QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~---~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+|.-||-++......++-+...|+ .+. ...+..+.+..+. .....||+|++|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~-------------------~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR-------------------DRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHH-------------------HTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH-------------------hcCCCCCEEEECC
Confidence 4899999999999999888887776 454 4678777665441 0245799999994
No 450
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=23.67 E-value=87 Score=26.58 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=29.4
Q ss_pred CCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 142 DVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 142 ~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
++-+|+++.. ...+....|+++|..=|+-||+ +.++..+++..+.
T Consensus 67 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~ 115 (329)
T 3evn_A 67 SIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAE 115 (329)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHH
Confidence 3445555333 3466678889999988999997 4556666555544
No 451
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=23.64 E-value=1.5e+02 Score=26.20 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
.+.+..++. ....+|||+-..-.+..++.+++.+||+....
T Consensus 266 ~~~L~~v~~-~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~i 306 (365)
T 3sr7_A 266 AQVLLNAQP-LMDKVEILASGGIRHPLDIIKALVLGAKAVGL 306 (365)
T ss_dssp HHHHHHHGG-GTTTSEEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHH-hcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 344555542 22478998888888899999999999998744
No 452
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=23.60 E-value=75 Score=26.52 Aligned_cols=32 Identities=6% Similarity=0.218 Sum_probs=23.1
Q ss_pred ccEEEEEeCCHHHH--------------HHHHHHHhhcCcEEEEEC
Q 026247 48 TFHVLAVDDSLIDR--------------KILENLLRVSSYQVTCVD 79 (241)
Q Consensus 48 ~~~VLIVDDd~~~~--------------~~l~~~L~~~g~~V~~~~ 79 (241)
.+||||-.+..-.. ..+.++|+..||+|.+..
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t 52 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAV 52 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEe
Confidence 47999997654322 246888988999998755
No 453
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=23.52 E-value=2.4e+02 Score=21.20 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=45.5
Q ss_pred CccEEEEeCCCCCCC------------------HHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCC
Q 026247 113 RVNLIMTDYCMPGMT------------------GYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVR 174 (241)
Q Consensus 113 ~~DlVllD~~mp~~~------------------G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~ 174 (241)
.+.+|++|+.=-=.+ -.++++.++. ..++++++|+.........+...|.++|+.....
T Consensus 7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~---~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~ 83 (180)
T 1k1e_A 7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMD---ADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLE 83 (180)
T ss_dssp GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHH---TTCEEEEEESCCCHHHHHHHHHHTCCEEEESCSC
T ss_pred CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHH---CCCeEEEEeCCCcHHHHHHHHHcCCceeecCCCC
Confidence 367888887532111 2467788874 3578999999887777777778899988865444
Q ss_pred hHHHHHHHHH
Q 026247 175 LSDLEKLQPR 184 (241)
Q Consensus 175 ~~~L~~~i~~ 184 (241)
..+....+.+
T Consensus 84 k~~~~~~~~~ 93 (180)
T 1k1e_A 84 KETACFDLMK 93 (180)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4444443333
No 454
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=23.52 E-value=94 Score=27.46 Aligned_cols=64 Identities=19% Similarity=0.361 Sum_probs=38.3
Q ss_pred cEEEEEeCCHHHH----HHHHHHHhhcCcEEEEEC------C---HHHHHHHHhhhcccccCCCCCCCcccccccCCCcc
Q 026247 49 FHVLAVDDSLIDR----KILENLLRVSSYQVTCVD------S---GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVN 115 (241)
Q Consensus 49 ~~VLIVDDd~~~~----~~l~~~L~~~g~~V~~~~------~---~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~D 115 (241)
-|+|||-|..... ..+.+.|+..|+.+..+. + ..++++.+ .+..+|
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~---------------------~~~~~D 90 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKIL---------------------KDNNSD 90 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHH---------------------HHHTCS
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH---------------------HhcCcC
Confidence 4799998865432 346667777787765432 3 33444444 344678
Q ss_pred EEEEeCCCCCCCHHHHHHHHh
Q 026247 116 LIMTDYCMPGMTGYDLLKRLK 136 (241)
Q Consensus 116 lVllD~~mp~~~G~el~~~lr 136 (241)
+||- +.|..-+++.+.+-
T Consensus 91 ~IIa---vGGGsv~D~aK~ia 108 (383)
T 3ox4_A 91 FVIS---LGGGSPHDCAKAIA 108 (383)
T ss_dssp EEEE---EESHHHHHHHHHHH
T ss_pred EEEE---eCCcHHHHHHHHHH
Confidence 7754 45655567666653
No 455
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=23.51 E-value=1.9e+02 Score=19.99 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=31.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcE-EEEECCHHHHHHHH
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQ-VTCVDSGDKALEYL 88 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~-V~~~~~~~eal~~l 88 (241)
.|+++............+|...||. |....-|-.++..-
T Consensus 54 ~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~ 93 (106)
T 3hix_A 54 DIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAI 93 (106)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHHHHT
T ss_pred eEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHHHHC
Confidence 5888888877778888899999995 88888888887653
No 456
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=23.50 E-value=1.9e+02 Score=24.70 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHh
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLL 186 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l 186 (241)
-+.++..|... +..+|.+-.. +.+...+++++|++-.+.-.++++++...+..+-
T Consensus 182 ~~av~~ar~~~-~~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~ 236 (284)
T 1qpo_A 182 VDALRAVRNAA-PDLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRD 236 (284)
T ss_dssp HHHHHHHHHHC-TTSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 34666776443 3446665443 4688899999999988899999999998887765
No 457
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=23.41 E-value=2.9e+02 Score=22.17 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=7.8
Q ss_pred HHHHHhhcCcEEEEE
Q 026247 64 LENLLRVSSYQVTCV 78 (241)
Q Consensus 64 l~~~L~~~g~~V~~~ 78 (241)
+++.++..||.+..+
T Consensus 38 i~~~a~~~g~~~~~~ 52 (289)
T 2fep_A 38 IEDIATMYKYNIILS 52 (289)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 344445566665543
No 458
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=23.34 E-value=81 Score=25.12 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=44.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcE--EE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQ--VT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~--V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+|..+|-++......+..+...|.. +. ...+..+. . + ....||+|++...+...
T Consensus 71 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~---------------------~~~~fD~v~~~~~l~~~ 127 (257)
T 3f4k_A 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-F---------------------QNEELDLIWSEGAIYNI 127 (257)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-S---------------------CTTCEEEEEEESCSCCC
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-C---------------------CCCCEEEEEecChHhhc
Confidence 8888888888888888887766642 33 23333111 0 1 34679999999888877
Q ss_pred CHHHHHHHHhh
Q 026247 127 TGYDLLKRLKV 137 (241)
Q Consensus 127 ~G~el~~~lr~ 137 (241)
+-..+++.++.
T Consensus 128 ~~~~~l~~~~~ 138 (257)
T 3f4k_A 128 GFERGMNEWSK 138 (257)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 76677777764
No 459
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=23.33 E-value=2.9e+02 Score=23.36 Aligned_cols=32 Identities=16% Similarity=0.425 Sum_probs=20.6
Q ss_pred ChHHHHHHHHcCCcceEeCCCC--hHHHHHHHHH
Q 026247 153 VPSRVTMCLEEGAEEFLLKPVR--LSDLEKLQPR 184 (241)
Q Consensus 153 ~~~~~~~a~~~Ga~dyL~KP~~--~~~L~~~i~~ 184 (241)
..+....|+++|..=|+-||+. .++...++..
T Consensus 79 h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~ 112 (354)
T 3db2_A 79 HAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQV 112 (354)
T ss_dssp HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHH
Confidence 3566777888888888888853 4454444433
No 460
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=23.26 E-value=1.8e+02 Score=24.26 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=53.9
Q ss_pred ccEEEEEe-CCHH---HHHHHHHHHhhcCcEEE---EE----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccE
Q 026247 48 TFHVLAVD-DSLI---DRKILENLLRVSSYQVT---CV----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNL 116 (241)
Q Consensus 48 ~~~VLIVD-Dd~~---~~~~l~~~L~~~g~~V~---~~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 116 (241)
..+|.++. |+.. ....+.+.++..|.++. .+ .+....+..+ ....||+
T Consensus 159 ~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~---------------------~~~~~da 217 (386)
T 3sg0_A 159 AKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKI---------------------IATKPDA 217 (386)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHH---------------------HHTCCSE
T ss_pred CCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHH---------------------HhcCCCE
Confidence 34665553 4443 33455666777787663 22 2445555555 3457899
Q ss_pred EEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcce
Q 026247 117 IMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEF 168 (241)
Q Consensus 117 VllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dy 168 (241)
|++... +.+...+++.++.... ..|++......+..... .....+.++
T Consensus 218 v~~~~~--~~~a~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~~~~~g~ 265 (386)
T 3sg0_A 218 VFIASA--GTPAVLPQKALRERGF-KGAIYQTHGVATEEFIK-LGGKDVEGA 265 (386)
T ss_dssp EEEECC--SGGGHHHHHHHHHTTC-CSEEECCGGGCSHHHHH-HHGGGGTTC
T ss_pred EEEecC--cchHHHHHHHHHHcCC-CCcEEeccccCCHHHHH-hhhhhcCCe
Confidence 988643 3456778888885543 46776555555544443 333334443
No 461
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=23.19 E-value=2.4e+02 Score=21.16 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=37.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+.+|.++...... ..+.+.+ .+..+..+.+..++++.| ...+.|+++.|.
T Consensus 111 ~g~~v~~~~g~~~~-~~l~~~~--~~~~~~~~~~~~~~~~~l---------------------~~grvDa~~~~~ 161 (229)
T 2y7i_A 111 KGKKVGLENGTTHQ-RYLQDKQ--QAITPVAYDSYLNAFTDL---------------------KNNRLEGVFGDV 161 (229)
T ss_dssp TTCEEEEETTSHHH-HHHHHHC--TTSEEEEESCHHHHHHHH---------------------HTTSCSEEEEEH
T ss_pred CCCEEEEecCCcHH-HHHHHhC--CCCeEEecCCHHHHHHHH---------------------HcCCcCEEEech
Confidence 45688888776653 2333222 257888899999999999 678899999984
No 462
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.16 E-value=2.9e+02 Score=22.15 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCcEEEE-EC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhh
Q 026247 62 KILENLLRVSSYQVTC-VD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKV 137 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~-~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~ 137 (241)
..+++.++..||.+.. .. +.....+.+..+ ....+|.||+--..+. ...+.+++++.
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l------------------~~~~vdgiIi~~~~~~-~~~~~~~~~~~ 84 (305)
T 3g1w_A 24 KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQA------------------IAKNPAGIAISAIDPV-ELTDTINKAVD 84 (305)
T ss_dssp HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHH------------------HHHCCSEEEECCSSTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHH------------------HHhCCCEEEEcCCCHH-HHHHHHHHHHH
Confidence 4456666778998876 32 333333333211 3456898887432222 12345666653
Q ss_pred cCCCCCcEEEEecC
Q 026247 138 SSWKDVPVVVMSSE 151 (241)
Q Consensus 138 ~~~~~~pII~lsa~ 151 (241)
..+|+|++...
T Consensus 85 ---~~iPvV~~~~~ 95 (305)
T 3g1w_A 85 ---AGIPIVLFDSG 95 (305)
T ss_dssp ---TTCCEEEESSC
T ss_pred ---CCCcEEEECCC
Confidence 46788887543
No 463
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=23.15 E-value=1.3e+02 Score=25.04 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=43.4
Q ss_pred cEEEEeCCCCCC-C--HHHHHHHHhhcCCC---CCcEEEEecCCChHHHHHHHHc--CCcceE--------eCC-CChHH
Q 026247 115 NLIMTDYCMPGM-T--GYDLLKRLKVSSWK---DVPVVVMSSENVPSRVTMCLEE--GAEEFL--------LKP-VRLSD 177 (241)
Q Consensus 115 DlVllD~~mp~~-~--G~el~~~lr~~~~~---~~pII~lsa~~~~~~~~~a~~~--Ga~dyL--------~KP-~~~~~ 177 (241)
.++++|+.--++ . -+++++.++.. .+ .+|||+--.-.+.++..++++. |+++.+ ..+ ++..+
T Consensus 173 ~il~t~i~~dG~~~G~d~eli~~l~~~-~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~ 251 (260)
T 2agk_A 173 EFLIHAADVEGLCGGIDELLVSKLFEW-TKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFED 251 (260)
T ss_dssp EEEEEC-------CCCCHHHHHHHHHH-HTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHH
T ss_pred EEEEEeeccccCcCCCCHHHHHHHHHh-hcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHH
Confidence 356667654332 2 36788888743 12 7899887777788999999987 888743 334 77777
Q ss_pred HHHHHH
Q 026247 178 LEKLQP 183 (241)
Q Consensus 178 L~~~i~ 183 (241)
+...++
T Consensus 252 ~~~~~~ 257 (260)
T 2agk_A 252 CCRWNE 257 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 464
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=23.15 E-value=2.9e+02 Score=22.17 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=31.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
++.|-+++.+-. -++++.++. ..++|.+.|- .+.+...++++.|++++++-
T Consensus 185 ~~~i~~~~~~~~---~~~v~~~~~---~G~~v~~wTv-n~~~~~~~l~~~GvdgI~TD 235 (247)
T 2otd_A 185 CVSIHLNHKLLD---KARVMQLKD---AGLRILVYTV-NKPQHAAELLRWGVDCICTD 235 (247)
T ss_dssp CSEEEEEGGGCC---HHHHHHHHH---TTCEEEEECC-CCHHHHHHHHHHTCSEEEES
T ss_pred CeEEecChHhCC---HHHHHHHHH---CCCEEEEEcc-CCHHHHHHHHHcCCCEEEeC
Confidence 344545443321 345566653 3567777775 45677778888888887764
No 465
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=23.03 E-value=1.7e+02 Score=23.50 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=40.9
Q ss_pred EEEEeCCC-CC-CCHHHHHHHHhhcCCCCCcEE--EEecCCChHHHHHHHHcCCcceEeCCCChHHH-HHHHHHHh
Q 026247 116 LIMTDYCM-PG-MTGYDLLKRLKVSSWKDVPVV--VMSSENVPSRVTMCLEEGAEEFLLKPVRLSDL-EKLQPRLL 186 (241)
Q Consensus 116 lVllD~~m-p~-~~G~el~~~lr~~~~~~~pII--~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L-~~~i~~~l 186 (241)
+.++|-.. |. .-|.+.++.||... ..|+. +++. +....+..+.++|++....-....++. ...++.+.
T Consensus 38 l~i~Dg~fv~~~~~~~~~~~~lr~~~--~~~~~v~lmv~-d~~~~i~~~~~agad~v~vH~~~~~~~~~~~~~~i~ 110 (228)
T 1h1y_A 38 MDIMDGHFVPNLTIGAPVIQSLRKHT--KAYLDCHLMVT-NPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIK 110 (228)
T ss_dssp EEEEBSSSSSCBCBCHHHHHHHHTTC--CSEEEEEEESS-CGGGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHH
T ss_pred EEEecCCcCcchhhCHHHHHHHHhhc--CCcEEEEEEec-CHHHHHHHHHHcCCCEEEECCCCcccHHHHHHHHHH
Confidence 44555332 22 33789999998532 34544 6664 445678889999999886654333333 44455544
No 466
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=23.01 E-value=2.1e+02 Score=24.04 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=35.1
Q ss_pred CCCcc-EEEEeCCCCCCCH-----------HHHHHHHhhcCCCCCcEEEEecCC-ChHH----HHHHHHcCCcceEe
Q 026247 111 ESRVN-LIMTDYCMPGMTG-----------YDLLKRLKVSSWKDVPVVVMSSEN-VPSR----VTMCLEEGAEEFLL 170 (241)
Q Consensus 111 ~~~~D-lVllD~~mp~~~G-----------~el~~~lr~~~~~~~pII~lsa~~-~~~~----~~~a~~~Ga~dyL~ 170 (241)
+..+| .|-+.+.-|...| .++++.+|.. .++||++-.+.. +.+. ...+.++|++.+..
T Consensus 117 ~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~--~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 117 ESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTF--FTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNS 191 (311)
T ss_dssp HSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTT--CCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEE
T ss_pred hcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHh--cCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 44578 8888876565322 4677777742 367887744332 3222 45667889987654
No 467
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=22.99 E-value=2.7e+02 Score=23.52 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=44.9
Q ss_pred CCCccEEEEe-C--CCCC--CC--HHHHHHHHhhcCCCCCcEEEEecCCCh------HHHHHHHHcCCcce-EeCCC---
Q 026247 111 ESRVNLIMTD-Y--CMPG--MT--GYDLLKRLKVSSWKDVPVVVMSSENVP------SRVTMCLEEGAEEF-LLKPV--- 173 (241)
Q Consensus 111 ~~~~DlVllD-~--~mp~--~~--G~el~~~lr~~~~~~~pII~lsa~~~~------~~~~~a~~~Ga~dy-L~KP~--- 173 (241)
....+++|+. - .-|. .+ -+..+..++.. .++||++.++|... .....+...||++. |-|-+
T Consensus 171 ~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~--~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~~~d 248 (276)
T 1vs1_A 171 EGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEA--THLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPE 248 (276)
T ss_dssp TTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHH--BSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSSGG
T ss_pred cCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHH--hCCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecCCcc
Confidence 3456888887 2 1232 11 23344556643 25788888888643 55667789999865 44544
Q ss_pred ----------ChHHHHHHHHHHh
Q 026247 174 ----------RLSDLEKLQPRLL 186 (241)
Q Consensus 174 ----------~~~~L~~~i~~~l 186 (241)
.+++|..++..+.
T Consensus 249 ~a~~D~~~sl~p~~~~~lv~~i~ 271 (276)
T 1vs1_A 249 EALSDAKQQLTPGEFARLMGELR 271 (276)
T ss_dssp GCSSCGGGCBCHHHHHHHHHHHH
T ss_pred cCCCchhcCCCHHHHHHHHHHHH
Confidence 5666766666554
No 468
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=22.98 E-value=66 Score=27.27 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=27.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhh--cCcEEEEECC-HHHHHHHH
Q 026247 46 QETFHVLAVDDSLIDRKILENLLRV--SSYQVTCVDS-GDKALEYL 88 (241)
Q Consensus 46 ~~~~~VLIVDDd~~~~~~l~~~L~~--~g~~V~~~~~-~~eal~~l 88 (241)
...++||++..+..+....+++... .||.|.++.. ..+.++.|
T Consensus 28 ~~~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L 73 (260)
T 1zgh_A 28 AGLMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKV 73 (260)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHH
T ss_pred cCceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHH
Confidence 3458999999888877766665332 4688876643 33345666
No 469
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=22.93 E-value=1.3e+02 Score=23.98 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCHHHHH---HHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHH
Q 026247 56 DSLIDRK---ILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGY 129 (241)
Q Consensus 56 Dd~~~~~---~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~ 129 (241)
+++.... .+.+.+...||.+..+. +.....+.+..+ ....+|-||+-- .+ -
T Consensus 19 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l------------------~~~~~dgiIi~~----~~-~ 75 (277)
T 3e61_A 19 SNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATF------------------VSHNCTGMISTA----FN-E 75 (277)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHH------------------HHTTCSEEEECG----GG-H
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH------------------HhCCCCEEEEec----CC-h
Confidence 3555544 45555667898877643 333223333211 345789888743 12 3
Q ss_pred HHHH-HHhhcCCCCCcEEEEecC
Q 026247 130 DLLK-RLKVSSWKDVPVVVMSSE 151 (241)
Q Consensus 130 el~~-~lr~~~~~~~pII~lsa~ 151 (241)
+.++ .++. ..+|+|++-..
T Consensus 76 ~~~~~~l~~---~~iPvV~~~~~ 95 (277)
T 3e61_A 76 NIIENTLTD---HHIPFVFIDRI 95 (277)
T ss_dssp HHHHHHHHH---C-CCEEEGGGC
T ss_pred HHHHHHHHc---CCCCEEEEecc
Confidence 4456 6653 36888877543
No 470
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=22.92 E-value=2.7e+02 Score=24.14 Aligned_cols=55 Identities=27% Similarity=0.227 Sum_probs=40.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCcE-E-EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSYQ-V-TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~~-V-~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
..+|.-||-++......+.-+...|+. + ....+..+.+..+. .....||+|++|.
T Consensus 231 ~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~-------------------~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 231 FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLE-------------------KEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHH-------------------HTTCCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHH-------------------hcCCCeeEEEECC
Confidence 357999999999999888888777753 3 34677777665441 0245799999985
No 471
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=22.82 E-value=1.7e+02 Score=24.75 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=22.9
Q ss_pred ChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 153 VPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 153 ~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
..+....|+++|..=|+-||+ +.++...++..+.
T Consensus 80 h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~ 115 (330)
T 3e9m_A 80 HYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQ 115 (330)
T ss_dssp HHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 456677888888888888886 4455555544443
No 472
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=22.80 E-value=3.2e+02 Score=22.42 Aligned_cols=18 Identities=17% Similarity=-0.060 Sum_probs=10.8
Q ss_pred HHHHHHHHhhcCcEEEEE
Q 026247 61 RKILENLLRVSSYQVTCV 78 (241)
Q Consensus 61 ~~~l~~~L~~~g~~V~~~ 78 (241)
...+++.++..||.+..+
T Consensus 26 ~~gi~~~~~~~g~~~~~~ 43 (296)
T 2hqb_A 26 YEGLLNIHSNLDVDVVLE 43 (296)
T ss_dssp HHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHHhCCeEEEE
Confidence 344555666677776654
No 473
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=22.77 E-value=3.1e+02 Score=22.33 Aligned_cols=54 Identities=22% Similarity=0.130 Sum_probs=38.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCc-EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSY-QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDY 121 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~-~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~ 121 (241)
.+|.-+|-++.....+++.++..|+ .+. ...++.+....+. .....||+|++|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~-------------------~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLL-------------------KNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-------------------HTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhh-------------------hccccCCEEEEcC
Confidence 6899999999999999999888876 343 4567766543320 0145799999994
No 474
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=22.72 E-value=3.4e+02 Score=22.69 Aligned_cols=31 Identities=23% Similarity=0.018 Sum_probs=17.5
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHhhcCcEEEEE
Q 026247 48 TFHVLAVDDSLID---RKILENLLRVSSYQVTCV 78 (241)
Q Consensus 48 ~~~VLIVDDd~~~---~~~l~~~L~~~g~~V~~~ 78 (241)
+.+|+++|-|... ...+..+....|+.+..+
T Consensus 126 ~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~ 159 (295)
T 1ls1_A 126 GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (295)
T ss_dssp TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEc
Confidence 4589999876432 222334445566666544
No 475
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=22.71 E-value=1.8e+02 Score=23.35 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=6.5
Q ss_pred HHHHhhcCcEEEEE
Q 026247 65 ENLLRVSSYQVTCV 78 (241)
Q Consensus 65 ~~~L~~~g~~V~~~ 78 (241)
+..++..||.+..+
T Consensus 31 ~~~a~~~g~~~~~~ 44 (290)
T 3clk_A 31 QEEAHKNGYNLIIV 44 (290)
T ss_dssp HHHHHTTTCEEEEE
T ss_pred HHHHHHcCCeEEEE
Confidence 33444455555443
No 476
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=22.62 E-value=51 Score=27.21 Aligned_cols=33 Identities=12% Similarity=-0.036 Sum_probs=23.2
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhcCcEEEEECCH
Q 026247 49 FHVLAVDDSLI--------DRKILENLLRVSSYQVTCVDSG 81 (241)
Q Consensus 49 ~~VLIVDDd~~--------~~~~l~~~L~~~g~~V~~~~~~ 81 (241)
++|+|+.+... ....+...+++.||+|..+...
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 57888876441 3345677788899999887654
No 477
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=22.61 E-value=1.5e+02 Score=25.07 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=32.2
Q ss_pred CCCcEEEEecC--CChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHHh
Q 026247 141 KDVPVVVMSSE--NVPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRLL 186 (241)
Q Consensus 141 ~~~pII~lsa~--~~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~l 186 (241)
+++-+|+++.. ...+....|+++|.+=|+-||+ +.++...++...-
T Consensus 72 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 121 (318)
T 3oa2_A 72 TALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIER 121 (318)
T ss_dssp TSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHH
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHH
Confidence 45555555443 3467788999999999999996 5666666555443
No 478
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=22.59 E-value=1.7e+02 Score=23.47 Aligned_cols=17 Identities=0% Similarity=-0.181 Sum_probs=9.4
Q ss_pred HHHHHHHhhcCcEEEEE
Q 026247 62 KILENLLRVSSYQVTCV 78 (241)
Q Consensus 62 ~~l~~~L~~~g~~V~~~ 78 (241)
..+.+.++..||.+..+
T Consensus 25 ~gi~~~a~~~g~~~~~~ 41 (291)
T 3l49_A 25 QAQIAEIERLGGTAIAL 41 (291)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 34455555667666544
No 479
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=22.56 E-value=1.3e+02 Score=27.63 Aligned_cols=52 Identities=10% Similarity=-0.098 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEE-ECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCC
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTC-VDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYC 122 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~-~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~ 122 (241)
-+|+-+|=++.....+++.++..|..|.. ..++.+..... ...||+|++|.-
T Consensus 127 g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~----------------------~~~FD~Il~D~P 179 (464)
T 3m6w_A 127 GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF----------------------GTYFHRVLLDAP 179 (464)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH----------------------CSCEEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc----------------------cccCCEEEECCC
Confidence 47999999999999999999888876433 45666654333 457999999853
No 480
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=22.55 E-value=1.7e+02 Score=23.73 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=42.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCc--EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 48 TFHVLAVDDSLIDRKILENLLRVSSY--QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 48 ~~~VLIVDDd~~~~~~l~~~L~~~g~--~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
+.+|..||-++......+..+...|. .+. ...+..+... . ....||+|++...+.
T Consensus 90 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~---------------------~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 90 GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-H---------------------LETPVDLILFHAVLE 147 (285)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-G---------------------CSSCEEEEEEESCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-h---------------------cCCCceEEEECchhh
Confidence 45889999988888888888876654 233 2344433211 1 356799999987654
Q ss_pred CC-CHHHHHHHHhh
Q 026247 125 GM-TGYDLLKRLKV 137 (241)
Q Consensus 125 ~~-~G~el~~~lr~ 137 (241)
-. +-..+++.++.
T Consensus 148 ~~~~~~~~l~~~~~ 161 (285)
T 4htf_A 148 WVADPRSVLQTLWS 161 (285)
T ss_dssp GCSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHH
Confidence 32 33566677664
No 481
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.50 E-value=3e+02 Score=21.97 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=37.4
Q ss_pred CCHHHHH---HHHHHHhhcCcEEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH-
Q 026247 56 DSLIDRK---ILENLLRVSSYQVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG- 128 (241)
Q Consensus 56 Dd~~~~~---~l~~~L~~~g~~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G- 128 (241)
+++.... .+.+.++..||.+..+. +.....+.+..+ ....+|-||+--. ..+.
T Consensus 12 ~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l------------------~~~~vdgiIi~~~--~~~~~ 71 (283)
T 2ioy_A 12 NNPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDL------------------IQQKVDVLLINPV--DSDAV 71 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH------------------HHTTCSEEEECCS--STTTT
T ss_pred CCHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHH------------------HHcCCCEEEEeCC--chhhh
Confidence 3454443 45566677899887653 233223333211 3457898887322 2222
Q ss_pred HHHHHHHhhcCCCCCcEEEEe
Q 026247 129 YDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~ls 149 (241)
.+.++.++. ..+|+|++-
T Consensus 72 ~~~~~~~~~---~~iPvV~~~ 89 (283)
T 2ioy_A 72 VTAIKEANS---KNIPVITID 89 (283)
T ss_dssp HHHHHHHHH---TTCCEEEES
T ss_pred HHHHHHHHH---CCCeEEEec
Confidence 245566653 357888774
No 482
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.49 E-value=3e+02 Score=22.03 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCc-EEEEEC---CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCH-HHHHHHH
Q 026247 61 RKILENLLRVSSY-QVTCVD---SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTG-YDLLKRL 135 (241)
Q Consensus 61 ~~~l~~~L~~~g~-~V~~~~---~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G-~el~~~l 135 (241)
...+++.++..|| .+..+. +.....+.+..+ ....+|.||+--. ..+. .+.++.+
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~vdgiii~~~--~~~~~~~~~~~~ 80 (309)
T 2fvy_A 21 RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL------------------LAKGVKALAINLV--DPAAAGTVIEKA 80 (309)
T ss_dssp HHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHH------------------HHTTCSEEEECCS--SGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH------------------HHcCCCEEEEeCC--CcchhHHHHHHH
Confidence 3445666677898 877653 333333333211 3457898887321 1222 3456666
Q ss_pred hhcCCCCCcEEEEecC
Q 026247 136 KVSSWKDVPVVVMSSE 151 (241)
Q Consensus 136 r~~~~~~~pII~lsa~ 151 (241)
+. ..+|+|++-..
T Consensus 81 ~~---~~iPvV~~~~~ 93 (309)
T 2fvy_A 81 RG---QNVPVVFFNKE 93 (309)
T ss_dssp HT---TTCCEEEESSC
T ss_pred HH---CCCcEEEecCC
Confidence 53 46888887543
No 483
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=22.48 E-value=3.3e+02 Score=22.43 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=42.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHh-hcCcEEEEECC-HHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCC
Q 026247 49 FHVLAVDDSLIDRKILENLLR-VSSYQVTCVDS-GDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGM 126 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~-~~g~~V~~~~~-~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~ 126 (241)
+||.|+--.-.+...+.+.+. ..++++..+-+ ..+.-+.+ . ..+| |++|..-|.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~---------------------~-~~~D-vvIDfT~p~- 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT---------------------D-GNTE-VVIDFTHPD- 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH---------------------H-TTCC-EEEECSCTT-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh---------------------c-cCCc-EEEEccChH-
Confidence 467778765555555555554 34888875432 11111122 1 2478 788998776
Q ss_pred CHHHHHHHHhhcCCCCCcEEEEec
Q 026247 127 TGYDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 127 ~G~el~~~lr~~~~~~~pII~lsa 150 (241)
...+.+..... ..+|+|+-|.
T Consensus 57 a~~~~~~~a~~---~g~~~VigTT 77 (245)
T 1p9l_A 57 VVMGNLEFLID---NGIHAVVGTT 77 (245)
T ss_dssp THHHHHHHHHH---TTCEEEECCC
T ss_pred HHHHHHHHHHH---cCCCEEEcCC
Confidence 44666655442 3567777443
No 484
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=22.44 E-value=1.1e+02 Score=23.03 Aligned_cols=41 Identities=15% Similarity=0.028 Sum_probs=23.2
Q ss_pred CCccEEEEEeCC--HHHHHHHHHHHhhcCcEEE-EECCHHHHHHHH
Q 026247 46 QETFHVLAVDDS--LIDRKILENLLRVSSYQVT-CVDSGDKALEYL 88 (241)
Q Consensus 46 ~~~~~VLIVDDd--~~~~~~l~~~L~~~g~~V~-~~~~~~eal~~l 88 (241)
..+++|.|||.| +..+..+ +.|. ..+.+. ...+.+++.+.+
T Consensus 8 ~~~~~vaVvd~D~s~~s~~l~-~~l~-~~~~~~~~~~s~~ea~~~l 51 (156)
T 3cni_A 8 TVGQKVAIVREDTGTIAELAE-KALG-NMVDIVYAGSDLKEAEEAV 51 (156)
T ss_dssp ---CEEEEEECCCSHHHHHHH-HHHH-TSSEEEEEESCHHHHHHHH
T ss_pred CCCCcEEEEECCCCHHHHHHH-HHhc-CcEEEEecCCCHHHHHHHH
Confidence 346789998854 3334444 4444 333322 247899999988
No 485
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=22.43 E-value=2.1e+02 Score=24.10 Aligned_cols=55 Identities=5% Similarity=0.060 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHH
Q 026247 129 YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRL 185 (241)
Q Consensus 129 ~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~ 185 (241)
.+.++..|.......+|++-+. ..+...++.++|++....-+++++.+...+..+
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~--tlee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l 223 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECE--SFEEAKNAMNAGADIVMCDNLSVLETKEIAAYR 223 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEES--SHHHHHHHHHHTCSEEEEETCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEEcC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4566777744322345655332 347788899999988888899999998877654
No 486
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=22.40 E-value=3.1e+02 Score=22.20 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=38.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHH
Q 026247 114 VNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQP 183 (241)
Q Consensus 114 ~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~ 183 (241)
++.+-+++.+-. -++++.++. ...+|.+.|- .+.+...++++.|++++++-- +..+...+.
T Consensus 188 ~~~i~~~~~~~~---~~~v~~~~~---~G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD~--P~~~~~~l~ 248 (252)
T 3qvq_A 188 CAGLHIHQSFFD---VQQVSDIKA---AGYKVLAFTI-NDESLALKLYNQGLDAVFSDY--PQKIQSAID 248 (252)
T ss_dssp CSEEEEEGGGCC---HHHHHHHHH---TTCEEEEECC-CCHHHHHHHHHTTCCEEEESS--HHHHHHHHH
T ss_pred CeEEecchhhCC---HHHHHHHHH---CCCEEEEEcC-CCHHHHHHHHHcCCCEEEeCC--HHHHHHHHH
Confidence 344555543322 355666664 3578888876 567888899999999999742 444444443
No 487
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=22.39 E-value=1e+02 Score=26.37 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=42.8
Q ss_pred EEECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChH
Q 026247 76 TCVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPS 155 (241)
Q Consensus 76 ~~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~ 155 (241)
..+.+.+++.+.+. ...|+|++|-.-|. +-.++.+.++.. .+.+|+ ..|+--+.+
T Consensus 198 VEV~tleea~eA~~----------------------aGaD~I~LDn~~~e-~l~~av~~l~~~-~~~v~i-eASGGIt~e 252 (285)
T 1o4u_A 198 VEVENLEDALRAVE----------------------AGADIVMLDNLSPE-EVKDISRRIKDI-NPNVIV-EVSGGITEE 252 (285)
T ss_dssp EEESSHHHHHHHHH----------------------TTCSEEEEESCCHH-HHHHHHHHHHHH-CTTSEE-EEEECCCTT
T ss_pred EEeCCHHHHHHHHH----------------------cCCCEEEECCCCHH-HHHHHHHHhhcc-CCCceE-EEECCCCHH
Confidence 35789999998872 34799999973221 111233334321 234554 456666777
Q ss_pred HHHHHHHcCCcceE
Q 026247 156 RVTMCLEEGAEEFL 169 (241)
Q Consensus 156 ~~~~a~~~Ga~dyL 169 (241)
.+.+..+.|+|.+-
T Consensus 253 ni~~~a~tGVD~Is 266 (285)
T 1o4u_A 253 NVSLYDFETVDVIS 266 (285)
T ss_dssp TGGGGCCTTCCEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 78788889987654
No 488
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=22.34 E-value=3e+02 Score=22.03 Aligned_cols=72 Identities=10% Similarity=-0.030 Sum_probs=39.1
Q ss_pred CCHHHHH---HHHHHHhhcCcEEEEEC-----CHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCCCCC
Q 026247 56 DSLIDRK---ILENLLRVSSYQVTCVD-----SGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMPGMT 127 (241)
Q Consensus 56 Dd~~~~~---~l~~~L~~~g~~V~~~~-----~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp~~~ 127 (241)
+++.+.. .+.+.++..||.+..+. +...-.+.+..+ ....+|-||+--. ..+
T Consensus 12 ~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~vdgiIi~~~--~~~ 71 (288)
T 1gud_A 12 SNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDL------------------SNKNYKGIAFAPL--SSV 71 (288)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHH------------------HTSSEEEEEECCS--SSS
T ss_pred CchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHH------------------HHcCCCEEEEeCC--ChH
Confidence 4555544 45556677899877653 222222333211 3457898887432 222
Q ss_pred H-HHHHHHHhhcCCCCCcEEEEec
Q 026247 128 G-YDLLKRLKVSSWKDVPVVVMSS 150 (241)
Q Consensus 128 G-~el~~~lr~~~~~~~pII~lsa 150 (241)
. .+.++.++. ..+|+|++-.
T Consensus 72 ~~~~~~~~~~~---~~iPvV~~~~ 92 (288)
T 1gud_A 72 NLVMPVARAWK---KGIYLVNLDE 92 (288)
T ss_dssp TTHHHHHHHHH---TTCEEEEESS
T ss_pred HHHHHHHHHHH---CCCeEEEECC
Confidence 2 245566653 3688888754
No 489
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=22.32 E-value=2.7e+02 Score=24.17 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHHHhcC
Q 026247 140 WKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 188 (241)
Q Consensus 140 ~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~~l~~ 188 (241)
...+|+|++-..... .+..+.|+ .++..+ +.++|...+.+++..
T Consensus 324 a~G~PvV~~~~~~~~---~e~v~~G~-~~lv~~-d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 324 SLGKPVLVMRETTER---PEAVAAGT-VKLVGT-NQQQICDALSLLLTD 367 (396)
T ss_dssp GGTCCEEECCSSCSC---HHHHHHTS-EEECTT-CHHHHHHHHHHHHHC
T ss_pred HcCCCEEEccCCCcc---hHHHHcCc-eEEcCC-CHHHHHHHHHHHHcC
Confidence 357899875333332 23567786 466654 789999999998853
No 490
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=22.30 E-value=80 Score=26.22 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=11.6
Q ss_pred HHHHHHhhcCcEEEEEC
Q 026247 63 ILENLLRVSSYQVTCVD 79 (241)
Q Consensus 63 ~l~~~L~~~g~~V~~~~ 79 (241)
.+.+.|+..+++|+...
T Consensus 44 ~l~~aL~~~~~~v~~~~ 60 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMP 60 (256)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhcCceEEEEe
Confidence 34555666799988773
No 491
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=22.30 E-value=1.5e+02 Score=23.96 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=40.4
Q ss_pred CCCccEEEEeCCC-CCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCc
Q 026247 111 ESRVNLIMTDYCM-PGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAE 166 (241)
Q Consensus 111 ~~~~DlVllD~~m-p~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~ 166 (241)
+...|.|-+...+ ++.-.++.++.++......+||++.-+-.+.+...+.+.+||+
T Consensus 143 eaGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~ 199 (225)
T 1mzh_A 143 EAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp HHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HhCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCch
Confidence 3457888666544 2333457777777543347999998888888999999999998
No 492
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.26 E-value=3.3e+02 Score=22.44 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=46.9
Q ss_pred cEEEEE-eCCHHH---HHHHHHHHhhcCcEEEE---E----CCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEE
Q 026247 49 FHVLAV-DDSLID---RKILENLLRVSSYQVTC---V----DSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLI 117 (241)
Q Consensus 49 ~~VLIV-DDd~~~---~~~l~~~L~~~g~~V~~---~----~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 117 (241)
.+|.++ +|+..- ...+.+.++..|..+.. + .+....+..+ ....+|+|
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l---------------------~~~~~d~v 198 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRM---------------------KDAKPDAM 198 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHH---------------------HHHCCSEE
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHH---------------------HhcCCCEE
Confidence 456554 455443 34566777778876642 2 2555666665 34568999
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCC--CCcEEEEe
Q 026247 118 MTDYCMPGMTGYDLLKRLKVSSWK--DVPVVVMS 149 (241)
Q Consensus 118 llD~~mp~~~G~el~~~lr~~~~~--~~pII~ls 149 (241)
++.. .+.+...+++.++..... ++|++...
T Consensus 199 ~~~~--~~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 199 FVFV--PAGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp EEEC--CTTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred EEec--cchHHHHHHHHHHHcCCCcCCceEEecC
Confidence 9854 344788888888854322 26665443
No 493
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.22 E-value=2.3e+02 Score=20.48 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=28.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCcEEEEECCHHHHHHHH
Q 026247 49 FHVLAVDDSLIDRKILENLLRVSSYQVTCVDSGDKALEYL 88 (241)
Q Consensus 49 ~~VLIVDDd~~~~~~l~~~L~~~g~~V~~~~~~~eal~~l 88 (241)
.+|+|+--... ...+...|...|+.|+.+..-.+.++.+
T Consensus 8 ~~viIiG~G~~-G~~la~~L~~~g~~v~vid~~~~~~~~~ 46 (140)
T 3fwz_A 8 NHALLVGYGRV-GSLLGEKLLASDIPLVVIETSRTRVDEL 46 (140)
T ss_dssp SCEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred CCEEEECcCHH-HHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 37999988665 4455566667899998887666666666
No 494
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=22.22 E-value=3.1e+02 Score=22.16 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeCCCChHHHHHHHHH
Q 026247 111 ESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPR 184 (241)
Q Consensus 111 ~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~KP~~~~~L~~~i~~ 184 (241)
..-.++|=+.+ ...++.+.++.++.. .+++-+-+=| --..+....|+.+||+.. .-|-...++....++
T Consensus 40 ~gGv~~iel~~--k~~~~~~~i~~l~~~-~~~l~vgaGt-vl~~d~~~~A~~aGAd~v-~~p~~d~~v~~~ar~ 108 (224)
T 1vhc_A 40 KNGLSVAEITF--RSEAAADAIRLLRAN-RPDFLIAAGT-VLTAEQVVLAKSSGADFV-VTPGLNPKIVKLCQD 108 (224)
T ss_dssp HTTCCEEEEET--TSTTHHHHHHHHHHH-CTTCEEEEES-CCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHHHH
T ss_pred HcCCCEEEEec--cCchHHHHHHHHHHh-CcCcEEeeCc-EeeHHHHHHHHHCCCCEE-EECCCCHHHHHHHHH
Confidence 34466665554 455788888888743 3443332223 235788888999999744 456555554444444
No 495
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=22.10 E-value=3.7e+02 Score=22.89 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=37.8
Q ss_pred cCCCccEEEEeCCCCCCCHHHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEeC
Q 026247 110 EESRVNLIMTDYCMPGMTGYDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLK 171 (241)
Q Consensus 110 ~~~~~DlVllD~~mp~~~G~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~K 171 (241)
....+|+|.+....| .+++++++.. .++|+.-. ...+....+.+.|+|.++.-
T Consensus 99 ~~~g~d~V~l~~g~p----~~~~~~l~~~---g~~v~~~v--~s~~~a~~a~~~GaD~i~v~ 151 (326)
T 3bo9_A 99 IEEKVPVVTFGAGNP----TKYIRELKEN---GTKVIPVV--ASDSLARMVERAGADAVIAE 151 (326)
T ss_dssp HHTTCSEEEEESSCC----HHHHHHHHHT---TCEEEEEE--SSHHHHHHHHHTTCSCEEEE
T ss_pred HHCCCCEEEECCCCc----HHHHHHHHHc---CCcEEEEc--CCHHHHHHHHHcCCCEEEEE
Confidence 456789999887766 5778888742 45665432 34677788899999988773
No 496
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=22.03 E-value=1e+02 Score=24.65 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=35.2
Q ss_pred CccEEE---EeCCCCCCCH-HHHHHHHhhcCCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 113 RVNLIM---TDYCMPGMTG-YDLLKRLKVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 113 ~~DlVl---lD~~mp~~~G-~el~~~lr~~~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
..|+|+ ....-|+.+| .+-++.+|.......||+ ++.--..+...+++++|++.++.
T Consensus 130 ~~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~~~~~~i~-v~GGI~~~~~~~~~~aGad~ivv 190 (216)
T 1q6o_A 130 IGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVT-VTGGLALEDLPLFKGIPIHVFIA 190 (216)
T ss_dssp CCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEE-EESSCCGGGGGGGTTSCCSEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCcEE-EECCcChhhHHHHHHcCCCEEEE
Confidence 345665 2223377777 666677774322245555 55545567778899999997654
No 497
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=22.01 E-value=3.1e+02 Score=23.21 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=25.7
Q ss_pred CcEEEEecCC--ChHHHHHHHHcCCcceEeCCC--ChHHHHHHHHHH
Q 026247 143 VPVVVMSSEN--VPSRVTMCLEEGAEEFLLKPV--RLSDLEKLQPRL 185 (241)
Q Consensus 143 ~pII~lsa~~--~~~~~~~a~~~Ga~dyL~KP~--~~~~L~~~i~~~ 185 (241)
+-+|+++... ..+....++++|..=|+-||+ +.++...++..+
T Consensus 76 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a 122 (354)
T 3q2i_A 76 ADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAA 122 (354)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHH
Confidence 3344443332 355677788888888888886 444554444443
No 498
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=21.98 E-value=2.8e+02 Score=21.56 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=36.6
Q ss_pred CCccEEEEeCCCCCCCHH-------HHHHHHhhc---CCCCCcEEEEecCCChHHHHHHHHcCCcceEe
Q 026247 112 SRVNLIMTDYCMPGMTGY-------DLLKRLKVS---SWKDVPVVVMSSENVPSRVTMCLEEGAEEFLL 170 (241)
Q Consensus 112 ~~~DlVllD~~mp~~~G~-------el~~~lr~~---~~~~~pII~lsa~~~~~~~~~a~~~Ga~dyL~ 170 (241)
...|.|+++...|+.+|. +-++.+|.. .....||++ +.--..+...++.++|+++++.
T Consensus 130 ~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v-~GGI~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 130 DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV-DGGVDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE-ESSCCTTTHHHHHHHTCCEEEE
T ss_pred hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE-ECcCCHHHHHHHHHcCCCEEEE
Confidence 347899888777765553 334555532 112567654 4445577777889999998754
No 499
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=21.96 E-value=1.3e+02 Score=21.27 Aligned_cols=29 Identities=7% Similarity=0.005 Sum_probs=22.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCcEEEEE
Q 026247 50 HVLAVDDSLIDRKILENLLRVSSYQVTCV 78 (241)
Q Consensus 50 ~VLIVDDd~~~~~~l~~~L~~~g~~V~~~ 78 (241)
.+.|+-|++....-+..+++..||++...
T Consensus 55 ~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~ 83 (98)
T 1jdq_A 55 ILEVWIDYPMSKERIPETVKKLGHEVLEI 83 (98)
T ss_dssp EEEEEESSCTHHHHHHHHHHHSSCCEEEE
T ss_pred EEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 45666666777888889999999988764
No 500
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=21.96 E-value=2.3e+02 Score=20.58 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=51.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCc-EEE-EECCHHHHHHHHhhhcccccCCCCCCCcccccccCCCccEEEEeCCCC
Q 026247 47 ETFHVLAVDDSLIDRKILENLLRVSSY-QVT-CVDSGDKALEYLGLIDNLENNSNASPSTLSTKKEESRVNLIMTDYCMP 124 (241)
Q Consensus 47 ~~~~VLIVDDd~~~~~~l~~~L~~~g~-~V~-~~~~~~eal~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DlVllD~~mp 124 (241)
...+|..+|-++......+..+...|. .+. ...+..+ .+ ....||+|+++..
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~---------------------~~~~~D~i~~~~~-- 109 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VL---------------------DKLEFNKAFIGGT-- 109 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HG---------------------GGCCCSEEEECSC--
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cc---------------------cCCCCcEEEECCc--
Confidence 456899999999999999988887764 343 3566655 33 3457999999865
Q ss_pred CCCHHHHHHHHhhcCCCCCcEEEEe
Q 026247 125 GMTGYDLLKRLKVSSWKDVPVVVMS 149 (241)
Q Consensus 125 ~~~G~el~~~lr~~~~~~~pII~ls 149 (241)
.+-..+++.++.. ++-.+++.+
T Consensus 110 -~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 110 -KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp -SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred -ccHHHHHHHHhhC--CCCEEEEEe
Confidence 5566777777743 444444443
Done!