Query 026249
Match_columns 241
No_of_seqs 193 out of 1244
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02429 triosephosphate isome 100.0 1.4E-72 3E-77 518.7 22.8 232 8-240 8-270 (315)
2 KOG1643 Triosephosphate isomer 100.0 3.7E-71 7.9E-76 481.5 18.0 189 52-240 2-209 (247)
3 PRK14567 triosephosphate isome 100.0 2.8E-68 6E-73 478.2 20.0 186 54-240 2-209 (253)
4 PRK00042 tpiA triosephosphate 100.0 3.4E-68 7.5E-73 476.7 20.2 187 53-240 1-210 (250)
5 PRK14566 triosephosphate isome 100.0 4.3E-68 9.4E-73 478.5 20.5 188 52-240 3-219 (260)
6 PTZ00333 triosephosphate isome 100.0 5.4E-68 1.2E-72 476.7 20.3 189 52-240 3-214 (255)
7 PLN02561 triosephosphate isome 100.0 7.5E-68 1.6E-72 475.4 20.4 189 52-240 2-211 (253)
8 PF00121 TIM: Triosephosphate 100.0 1.3E-68 2.9E-73 477.7 14.6 186 55-240 1-209 (244)
9 cd00311 TIM Triosephosphate is 100.0 1.3E-67 2.9E-72 470.9 20.3 185 55-240 1-206 (242)
10 PRK15492 triosephosphate isome 100.0 2.1E-67 4.6E-72 474.1 20.9 188 52-240 1-219 (260)
11 COG0149 TpiA Triosephosphate i 100.0 2.1E-67 4.6E-72 471.2 20.0 187 52-240 1-209 (251)
12 PRK13962 bifunctional phosphog 100.0 4.9E-65 1.1E-69 504.4 20.4 191 50-240 394-606 (645)
13 PRK14905 triosephosphate isome 100.0 2E-64 4.4E-69 471.7 20.3 187 53-240 3-220 (355)
14 PRK14565 triosephosphate isome 100.0 1.3E-63 2.8E-68 444.4 19.7 166 54-222 2-187 (237)
15 TIGR00419 tim triosephosphate 100.0 3.7E-55 8.1E-60 382.8 16.3 157 56-240 1-176 (205)
16 PRK04302 triosephosphate isome 100.0 9E-37 2E-41 267.0 15.8 148 52-221 1-170 (223)
17 PRK11840 bifunctional sulfur c 95.0 0.082 1.8E-06 50.0 7.2 99 98-217 141-247 (326)
18 PRK13111 trpA tryptophan synth 92.8 0.26 5.7E-06 44.8 6.0 87 109-221 109-198 (258)
19 PLN02591 tryptophan synthase 88.3 1.4 3E-05 40.1 6.4 47 110-164 99-146 (250)
20 PF01183 Glyco_hydro_25: Glyco 81.3 11 0.00023 31.6 8.2 112 103-228 5-121 (181)
21 PRK13125 trpA tryptophan synth 79.1 36 0.00078 30.3 11.3 90 110-222 94-183 (244)
22 PRK08057 cobalt-precorrin-6x r 78.9 3.4 7.4E-05 37.4 4.7 52 100-160 173-224 (248)
23 cd04728 ThiG Thiazole synthase 75.9 11 0.00023 34.7 7.0 93 98-214 67-170 (248)
24 TIGR03234 OH-pyruv-isom hydrox 74.9 24 0.00052 30.8 8.8 150 56-218 2-167 (254)
25 cd04729 NanE N-acetylmannosami 74.5 9.8 0.00021 33.0 6.2 52 102-158 79-131 (219)
26 PRK00208 thiG thiazole synthas 72.7 15 0.00032 33.9 7.1 91 98-212 67-168 (250)
27 PRK09997 hydroxypyruvate isome 72.5 20 0.00044 31.5 7.8 150 57-218 4-168 (258)
28 cd06412 GH25_CH-type CH-type ( 72.0 63 0.0014 27.7 12.6 54 103-159 8-65 (199)
29 TIGR00433 bioB biotin syntheta 70.8 59 0.0013 29.0 10.6 107 102-223 119-240 (296)
30 PRK01060 endonuclease IV; Prov 70.7 26 0.00055 31.0 8.1 105 111-218 54-168 (281)
31 cd06525 GH25_Lyc-like Lyc mura 69.2 69 0.0015 27.0 12.6 106 103-228 7-118 (184)
32 cd02905 Macro_GDAP2_like Macro 69.0 7.2 0.00016 32.2 3.9 29 191-222 110-140 (140)
33 TIGR00715 precor6x_red precorr 66.2 6.8 0.00015 35.6 3.5 55 99-161 179-233 (256)
34 cd02904 Macro_H2A_like Macro d 62.6 27 0.00059 30.5 6.5 34 191-227 130-165 (186)
35 PRK09856 fructoselysine 3-epim 62.2 94 0.002 27.2 10.0 107 110-217 53-170 (275)
36 cd06413 GH25_muramidase_1 Unch 61.7 1E+02 0.0022 26.2 13.2 110 103-229 10-126 (191)
37 COG2099 CobK Precorrin-6x redu 61.7 18 0.00039 33.4 5.4 96 53-155 101-227 (257)
38 cd04724 Tryptophan_synthase_al 60.7 89 0.0019 27.8 9.6 88 110-221 97-185 (242)
39 PF03982 DAGAT: Diacylglycerol 60.1 48 0.001 30.9 8.0 23 205-227 258-280 (297)
40 cd06542 GH18_EndoS-like Endo-b 59.1 49 0.0011 29.0 7.6 87 135-222 49-141 (255)
41 smart00518 AP2Ec AP endonuclea 58.8 40 0.00087 29.6 7.0 30 189-218 133-162 (273)
42 PRK08508 biotin synthase; Prov 58.1 1.5E+02 0.0032 27.0 11.2 107 105-223 97-218 (279)
43 PRK06934 flavodoxin; Provision 57.8 7.5 0.00016 34.9 2.2 57 137-199 74-141 (221)
44 COG0635 HemN Coproporphyrinoge 57.4 1.9E+02 0.0042 28.1 12.2 138 55-224 91-263 (416)
45 cd07938 DRE_TIM_HMGL 3-hydroxy 56.7 1.4E+02 0.0031 27.1 10.4 41 142-182 78-121 (274)
46 cd06416 GH25_Lys1-like Lys-1 i 56.6 1.2E+02 0.0027 25.6 10.0 48 103-153 8-55 (196)
47 PF02571 CbiJ: Precorrin-6x re 56.4 12 0.00026 33.9 3.3 93 59-160 110-228 (249)
48 cd00851 MTH1175 This uncharact 54.5 30 0.00064 25.8 4.8 46 105-162 51-96 (103)
49 COG3981 Predicted acetyltransf 53.8 11 0.00024 32.9 2.5 106 53-164 28-146 (174)
50 PF14488 DUF4434: Domain of un 53.5 28 0.00061 29.6 4.9 109 111-227 27-153 (166)
51 COG2730 BglC Endoglucanase [Ca 52.9 95 0.0021 29.8 9.0 131 89-224 55-217 (407)
52 cd01137 PsaA Metal binding pro 52.7 46 0.00099 30.3 6.5 85 135-221 121-225 (287)
53 PF01261 AP_endonuc_2: Xylose 51.9 36 0.00079 27.7 5.3 82 136-218 70-154 (213)
54 PF02579 Nitro_FeMo-Co: Dinitr 51.9 34 0.00074 25.0 4.7 51 100-162 36-86 (94)
55 cd02908 Macro_Appr_pase_like M 51.0 60 0.0013 27.0 6.5 52 170-224 87-140 (165)
56 PRK13347 coproporphyrinogen II 50.9 2.2E+02 0.0048 27.7 11.3 108 109-225 154-279 (453)
57 cd02907 Macro_Af1521_BAL_like 50.8 46 0.001 27.9 5.9 32 191-225 115-148 (175)
58 PRK13209 L-xylulose 5-phosphat 50.8 40 0.00087 29.8 5.7 102 110-217 63-176 (283)
59 cd03174 DRE_TIM_metallolyase D 50.5 1.7E+02 0.0037 25.4 9.8 104 107-223 77-189 (265)
60 COG0351 ThiD Hydroxymethylpyri 48.2 30 0.00065 32.0 4.6 42 169-221 56-97 (263)
61 cd00861 ProRS_anticodon_short 47.5 36 0.00078 24.8 4.2 42 110-161 24-65 (94)
62 KOG4131 Ngg1-interacting facto 46.7 47 0.001 30.8 5.5 42 104-149 211-256 (272)
63 PRK12616 pyridoxal kinase; Rev 45.8 36 0.00078 30.5 4.7 42 169-221 58-99 (270)
64 PRK09545 znuA high-affinity zi 44.9 61 0.0013 30.0 6.1 82 136-221 150-251 (311)
65 cd00019 AP2Ec AP endonuclease 44.4 83 0.0018 27.8 6.7 80 138-218 86-165 (279)
66 cd00331 IGPS Indole-3-glycerol 44.4 75 0.0016 27.3 6.3 47 109-161 86-132 (217)
67 cd00599 GH25_muramidase Endo-N 43.0 1.9E+02 0.0042 23.9 10.3 105 103-227 7-118 (186)
68 TIGR00097 HMP-P_kinase phospho 42.8 48 0.001 29.2 4.9 42 169-221 51-92 (254)
69 TIGR03772 anch_rpt_subst ancho 42.3 75 0.0016 31.8 6.6 83 137-221 317-419 (479)
70 PF01301 Glyco_hydro_35: Glyco 41.4 51 0.0011 30.8 5.1 50 111-160 31-86 (319)
71 PRK09249 coproporphyrinogen II 41.1 2.3E+02 0.005 27.5 9.7 108 110-225 154-278 (453)
72 PTZ00493 phosphomethylpyrimidi 40.7 51 0.0011 31.1 5.0 42 169-221 57-98 (321)
73 TIGR03699 mena_SCO4550 menaqui 40.7 2.5E+02 0.0054 25.9 9.5 109 107-224 143-268 (340)
74 cd06523 GH25_PlyB-like PlyB is 40.1 69 0.0015 27.0 5.3 48 103-153 7-55 (177)
75 PRK05692 hydroxymethylglutaryl 39.4 3.1E+02 0.0067 25.2 11.3 25 64-92 22-46 (287)
76 PF03129 HGTP_anticodon: Antic 38.7 60 0.0013 23.8 4.2 43 110-162 22-64 (94)
77 cd06522 GH25_AtlA-like AtlA is 38.6 68 0.0015 27.4 5.1 48 103-153 8-58 (192)
78 PF08915 tRNA-Thr_ED: Archaea- 38.5 80 0.0017 26.6 5.3 49 177-230 63-111 (138)
79 cd07942 DRE_TIM_LeuA Mycobacte 38.5 3.1E+02 0.0066 25.4 9.6 40 143-182 81-127 (284)
80 cd06524 GH25_YegX-like YegX is 38.0 67 0.0014 27.3 4.9 48 103-153 7-58 (194)
81 TIGR00262 trpA tryptophan synt 38.0 1.9E+02 0.0041 26.2 8.0 47 110-164 108-155 (256)
82 PRK08208 coproporphyrinogen II 37.9 3.8E+02 0.0082 25.8 11.2 105 110-225 144-263 (430)
83 PF07745 Glyco_hydro_53: Glyco 37.5 56 0.0012 31.0 4.7 43 110-158 30-79 (332)
84 PRK06256 biotin synthase; Vali 37.4 3.3E+02 0.0071 25.0 10.0 101 110-223 155-269 (336)
85 PF12682 Flavodoxin_4: Flavodo 37.3 2.4 5.2E-05 35.5 -4.0 66 137-208 14-91 (156)
86 PF10137 TIR-like: Predicted n 37.2 48 0.001 27.1 3.7 30 121-158 2-32 (125)
87 cd06415 GH25_Cpl1-like Cpl-1 l 37.1 57 0.0012 27.9 4.4 47 103-153 8-54 (196)
88 PRK05581 ribulose-phosphate 3- 35.8 2.7E+02 0.0059 23.5 10.4 40 111-158 78-117 (220)
89 PRK12412 pyridoxal kinase; Rev 35.5 71 0.0015 28.5 4.9 41 169-220 56-96 (268)
90 COG1027 AspA Aspartate ammonia 35.4 33 0.00071 34.0 2.8 26 198-223 231-256 (471)
91 COG2247 LytB Putative cell wal 35.1 41 0.00089 32.2 3.4 48 110-162 93-144 (337)
92 cd01019 ZnuA Zinc binding prot 34.8 1.2E+02 0.0026 27.5 6.4 81 136-220 126-226 (286)
93 COG0614 FepB ABC-type Fe3+-hyd 34.5 1.2E+02 0.0027 26.6 6.2 32 187-219 281-313 (319)
94 cd06419 GH25_muramidase_2 Unch 34.4 3E+02 0.0066 23.7 11.9 108 103-229 15-129 (190)
95 PRK00278 trpC indole-3-glycero 34.4 1.4E+02 0.003 27.0 6.6 49 109-163 125-173 (260)
96 cd01018 ZntC Metal binding pro 33.2 1.5E+02 0.0032 26.5 6.5 82 136-221 117-216 (266)
97 TIGR03551 F420_cofH 7,8-dideme 32.8 2.2E+02 0.0047 26.5 7.8 105 110-223 144-269 (343)
98 PRK06294 coproporphyrinogen II 32.2 4.4E+02 0.0095 24.9 11.5 110 110-225 106-231 (370)
99 TIGR00538 hemN oxygen-independ 32.2 4.8E+02 0.01 25.3 11.3 106 111-225 155-278 (455)
100 KOG3798 Predicted Zn-dependent 32.0 38 0.00082 31.9 2.5 27 193-220 265-291 (343)
101 COG0502 BioB Biotin synthase a 31.5 86 0.0019 30.0 4.9 55 110-164 147-210 (335)
102 cd00598 GH18_chitinase-like Th 31.3 3E+02 0.0065 22.8 7.8 85 135-223 47-138 (210)
103 PF01297 TroA: Periplasmic sol 30.8 1.6E+02 0.0035 25.8 6.3 46 173-220 137-197 (256)
104 cd04740 DHOD_1B_like Dihydroor 30.5 3.2E+02 0.0069 24.6 8.3 28 199-226 258-285 (296)
105 PRK04531 acetylglutamate kinas 30.3 84 0.0018 30.5 4.8 74 111-194 81-170 (398)
106 cd01017 AdcA Metal binding pro 30.1 1.6E+02 0.0035 26.5 6.3 49 171-221 156-219 (282)
107 PRK09936 hypothetical protein; 29.9 1.2E+02 0.0026 28.7 5.4 111 107-226 41-170 (296)
108 TIGR00542 hxl6Piso_put hexulos 29.9 2.9E+02 0.0063 24.4 7.9 99 111-214 59-168 (279)
109 TIGR01689 EcbF-BcbF capsule bi 29.3 1.6E+02 0.0036 24.0 5.6 63 117-179 7-75 (126)
110 PLN02746 hydroxymethylglutaryl 29.2 2.5E+02 0.0054 26.9 7.6 28 61-92 61-88 (347)
111 PRK13210 putative L-xylulose 5 29.1 3.4E+02 0.0074 23.7 8.1 87 110-197 58-154 (284)
112 cd00562 NifX_NifB This CD repr 29.1 1.3E+02 0.0027 22.2 4.7 46 104-161 48-94 (102)
113 cd00840 MPP_Mre11_N Mre11 nucl 29.1 1.5E+02 0.0033 24.6 5.6 45 88-132 159-204 (223)
114 PF00271 Helicase_C: Helicase 28.4 2E+02 0.0044 19.9 7.2 63 111-200 1-64 (78)
115 COG1217 TypA Predicted membran 27.9 64 0.0014 32.9 3.5 72 103-184 80-151 (603)
116 COG3370 Uncharacterized protei 27.6 25 0.00054 28.7 0.5 56 117-177 36-91 (113)
117 PF14871 GHL6: Hypothetical gl 27.5 1.5E+02 0.0033 24.2 5.2 45 110-157 6-64 (132)
118 TIGR03572 WbuZ glycosyl amidat 27.3 1.2E+02 0.0026 26.3 4.8 48 110-160 159-206 (232)
119 TIGR01037 pyrD_sub1_fam dihydr 27.1 2E+02 0.0043 26.0 6.4 27 199-225 261-287 (300)
120 PRK04143 hypothetical protein; 26.3 1.8E+02 0.004 26.8 6.0 34 191-227 203-238 (264)
121 PRK00431 RNase III inhibitor; 26.0 1.3E+02 0.0028 25.1 4.7 31 191-224 115-147 (177)
122 TIGR01211 ELP3 histone acetylt 25.6 6.2E+02 0.013 25.6 10.0 107 110-223 209-334 (522)
123 PRK07028 bifunctional hexulose 25.6 2.3E+02 0.0049 27.3 6.8 45 110-158 124-169 (430)
124 PF01661 Macro: Macro domain; 25.2 57 0.0012 24.5 2.2 41 169-214 74-117 (118)
125 cd07948 DRE_TIM_HCS Saccharomy 25.1 3.6E+02 0.0078 24.4 7.6 106 110-220 28-152 (262)
126 smart00852 MoCF_biosynth Proba 25.1 1.6E+02 0.0035 23.3 4.9 66 103-176 17-82 (135)
127 cd07945 DRE_TIM_CMS Leptospira 25.1 4.4E+02 0.0095 24.1 8.3 102 109-221 79-188 (280)
128 PRK07695 transcriptional regul 25.0 1.4E+02 0.0031 25.3 4.8 16 110-125 108-123 (201)
129 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.8 5.2E+02 0.011 23.3 11.1 94 111-222 98-191 (275)
130 PF00070 Pyr_redox: Pyridine n 24.6 1.5E+02 0.0033 21.1 4.2 52 102-155 7-59 (80)
131 PLN02389 biotin synthase 24.6 2.5E+02 0.0055 27.0 6.8 104 109-224 180-298 (379)
132 PRK10799 metal-binding protein 24.4 43 0.00093 30.0 1.5 56 110-181 179-234 (247)
133 PLN02783 diacylglycerol O-acyl 23.8 4E+02 0.0087 24.9 7.9 22 206-227 278-299 (315)
134 cd01016 TroA Metal binding pro 23.8 2.5E+02 0.0054 25.3 6.4 49 173-221 146-209 (276)
135 cd02871 GH18_chitinase_D-like 23.6 4.5E+02 0.0098 24.1 8.1 88 134-227 57-146 (312)
136 PF02449 Glyco_hydro_42: Beta- 23.5 1E+02 0.0022 28.9 3.9 48 109-158 15-68 (374)
137 PRK10878 hypothetical protein; 23.2 82 0.0018 23.6 2.6 26 197-223 40-65 (72)
138 cd00841 MPP_YfcE Escherichia c 23.1 56 0.0012 26.0 1.8 23 110-132 95-117 (155)
139 PF00994 MoCF_biosynth: Probab 23.0 1.3E+02 0.0028 24.2 3.9 62 106-175 19-80 (144)
140 cd07939 DRE_TIM_NifV Streptomy 22.6 5.5E+02 0.012 22.8 9.3 96 64-182 16-117 (259)
141 PF00857 Isochorismatase: Isoc 22.4 1.9E+02 0.0041 23.4 4.9 52 98-156 92-143 (174)
142 PRK14072 6-phosphofructokinase 22.3 2.1E+02 0.0045 28.0 5.8 44 120-164 72-117 (416)
143 TIGR00238 KamA family protein. 22.0 1.7E+02 0.0037 27.4 5.0 99 111-223 214-318 (331)
144 cd01169 HMPP_kinase 4-amino-5- 21.9 1.8E+02 0.0039 24.9 4.8 42 169-221 52-93 (242)
145 PRK01424 S-adenosylmethionine: 21.9 68 0.0015 31.1 2.4 27 134-161 253-279 (366)
146 cd01834 SGNH_hydrolase_like_2 21.9 4.1E+02 0.0089 21.1 6.8 46 152-198 64-114 (191)
147 PLN02746 hydroxymethylglutaryl 21.6 4.8E+02 0.01 25.0 8.0 101 110-222 127-239 (347)
148 TIGR00423 radical SAM domain p 21.5 6.2E+02 0.014 23.0 9.0 106 109-223 109-234 (309)
149 PLN02898 HMP-P kinase/thiamin- 21.5 1.6E+02 0.0034 29.0 4.9 41 169-220 62-102 (502)
150 COG1111 MPH1 ERCC4-like helica 21.3 3E+02 0.0066 28.1 6.8 73 105-198 378-454 (542)
151 TIGR01618 phage_P_loop phage n 21.3 1.3E+02 0.0029 26.7 4.0 57 99-156 113-178 (220)
152 PF12083 DUF3560: Domain of un 20.9 30 0.00065 28.6 -0.2 10 121-130 45-55 (126)
153 PRK14484 phosphotransferase ma 20.8 2.3E+02 0.005 23.2 5.0 39 150-194 26-64 (124)
154 TIGR02090 LEU1_arch isopropylm 20.7 7.2E+02 0.016 23.5 9.3 99 110-222 77-183 (363)
155 PF02044 Bombesin: Bombesin-li 20.7 26 0.00057 18.6 -0.4 7 196-202 2-8 (14)
156 TIGR01163 rpe ribulose-phospha 20.7 5E+02 0.011 21.6 10.8 41 110-158 72-112 (210)
157 PRK10343 RNA-binding protein Y 20.3 1.3E+02 0.0028 23.8 3.3 35 141-182 8-42 (97)
158 COG2854 Ttg2D ABC-type transpo 20.2 62 0.0013 28.9 1.6 28 204-231 85-112 (202)
No 1
>PLN02429 triosephosphate isomerase
Probab=100.00 E-value=1.4e-72 Score=518.72 Aligned_cols=232 Identities=70% Similarity=1.147 Sum_probs=206.7
Q ss_pred ccccccCCcCCCCCCCCccccccc------------ccccccCCCCCcchhhhhhhcCcceEEeecccccCHHHHHHHHH
Q 026249 8 NCAQFSGLRRSSPTQSYSQHVNSH------------LRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVS 75 (241)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~m~~~rk~~I~gNWKmn~t~~~~~~~~~ 75 (241)
..++|.|+||.++++..+++..++ .+..++ ..++.|+++.|...|||||+||||||++.+++.+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~i~gNWKmn~t~~~~~~~~~ 86 (315)
T PLN02429 8 APPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSS-SHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLIS 86 (315)
T ss_pred cCcccccccCCCccccccccccccchhhcccccccccccccc-ccccccccccccccCCEEEEEECCcCCCHHHHHHHHH
Confidence 446799999999887766533221 112223 3377899999998899999999999999999999999
Q ss_pred HHhhccc--CCCc-----------------ceeEeeeeeccccCCccccccccHHHHHhcCCCEEEecccccccccCCCh
Q 026249 76 DLNDAKL--EADV-----------------DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDD 136 (241)
Q Consensus 76 ~l~~~~~--~~~v-----------------~~i~igAQnv~~~~~GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd 136 (241)
.++.... +.+| ++|.+|||||++.+.||||||||++||+|+||+||||||||||++|+|+|
T Consensus 87 ~l~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVSa~mLkd~Gv~~ViiGHSERR~~f~Etd 166 (315)
T PLN02429 87 DLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKD 166 (315)
T ss_pred HHHhcccCCCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCCHHHHHHcCCCEEEeCccccCCCCCcCH
Confidence 9866321 1221 36899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHH
Q 026249 137 QFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHA 216 (241)
Q Consensus 137 ~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~ 216 (241)
+.|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+++.++++++++|||||+||||||++|+|++++++|+
T Consensus 167 ~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ivIAYEPvWAIGTGk~as~e~~~~v~~ 246 (315)
T PLN02429 167 EFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHV 246 (315)
T ss_pred HHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccceEEEECCHHHhCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccceeeecccC
Q 026249 217 ALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 217 ~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
+||++|+++|+++++.++.|.|-|
T Consensus 247 ~IR~~l~~~~~~~va~~irILYGG 270 (315)
T PLN02429 247 AVRGWLKKNVSEEVASKTRIIYGG 270 (315)
T ss_pred HHHHHHHHHhhhhhccCceEEEcC
Confidence 999999999999999999999977
No 2
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-71 Score=481.55 Aligned_cols=189 Identities=63% Similarity=1.023 Sum_probs=181.4
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhcccCCC--c-----------------ceeEeeeeeccccCCccccccccHHH
Q 026249 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEAD--V-----------------DRIEIAAQNSWVGKGGAFTGEISVEQ 112 (241)
Q Consensus 52 ~rk~~I~gNWKmn~t~~~~~~~~~~l~~~~~~~~--v-----------------~~i~igAQnv~~~~~GA~TGEVSa~m 112 (241)
.||+||+||||||++.++..++++.|+....+.+ | ..|.++||||+....||||||+||+|
T Consensus 2 arkffvgGNwKmngs~~s~~eii~~ln~a~~~~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~m 81 (247)
T KOG1643|consen 2 ARKFFVGGNWKMNGSKQSIKEIIKTLNAAKLPANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAEM 81 (247)
T ss_pred CcceEecccccccCcHHHHHHHHHHhhhccCCCCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccCHHH
Confidence 3799999999999999999999999988765432 1 57899999999999999999999999
Q ss_pred HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEE
Q 026249 113 LKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVI 192 (241)
Q Consensus 113 Lkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivI 192 (241)
|||+|++|||+||||||++|+|+|++|.+|++.||..||++|+||||++|+||+|+|.+|+.+||+++.+.+.+|++++|
T Consensus 82 lkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~nivi 161 (247)
T KOG1643|consen 82 LKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSNIVI 161 (247)
T ss_pred HHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 193 AYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 193 AYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
|||||||||||++|||+|+||+|+.||+|++++.++.+|....|+|-|
T Consensus 162 AYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGG 209 (247)
T KOG1643|consen 162 AYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGG 209 (247)
T ss_pred EeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEecc
Confidence 999999999999999999999999999999999999999999999987
No 3
>PRK14567 triosephosphate isomerase; Provisional
Probab=100.00 E-value=2.8e-68 Score=478.19 Aligned_cols=186 Identities=38% Similarity=0.636 Sum_probs=173.0
Q ss_pred cceEEeecccccCHHHHHHHHHHHhhcccC---CCc-----------------ceeEeeeeeccccCCccccccccHHHH
Q 026249 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLE---ADV-----------------DRIEIAAQNSWVGKGGAFTGEISVEQL 113 (241)
Q Consensus 54 k~~I~gNWKmn~t~~~~~~~~~~l~~~~~~---~~v-----------------~~i~igAQnv~~~~~GA~TGEVSa~mL 113 (241)
+|||+||||||++.+++.+|++.+...... .+| ++|.+|||||++.+.|||||||||+||
T Consensus 2 ~~~v~gNWKMn~~~~~~~~~~~~~~~~~~~~~~~~v~vaP~~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGEvS~~mL 81 (253)
T PRK14567 2 QKLIMGNWKMNGNSTSIKELCSGISQVQYDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARML 81 (253)
T ss_pred CeEEEEECCcCCCHHHHHHHHHHHHhhccCCCCcEEEEeCCHHHHHHHHHHhcCCCEEEccccccccCCCccCcCCHHHH
Confidence 689999999999999999999888553211 121 368899999999999999999999999
Q ss_pred HhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCC--CCCceE
Q 026249 114 KDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVV 191 (241)
Q Consensus 114 kd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~--~~~~iv 191 (241)
||+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|+|.+++.+||+..|++++ ++++++
T Consensus 82 kd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~~~iv 161 (253)
T PRK14567 82 EDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVV 161 (253)
T ss_pred HHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886 578999
Q ss_pred EeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 192 IAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 192 IAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
|||||+||||||++||||+||++|++||+++.+ ++++++..+.|.|-|
T Consensus 162 IAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~-~~~~~a~~v~IlYGG 209 (253)
T PRK14567 162 IAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGG 209 (253)
T ss_pred EEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-hcccccccceEEEcC
Confidence 999999999999999999999999999999988 798999999999877
No 4
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=3.4e-68 Score=476.72 Aligned_cols=187 Identities=49% Similarity=0.738 Sum_probs=174.4
Q ss_pred CcceEEeecccccCHHHHHHHHHHHhhccc---CCCc------------------ceeEeeeeeccccCCccccccccHH
Q 026249 53 NKFFVGGNWKCNGTKESITKLVSDLNDAKL---EADV------------------DRIEIAAQNSWVGKGGAFTGEISVE 111 (241)
Q Consensus 53 rk~~I~gNWKmn~t~~~~~~~~~~l~~~~~---~~~v------------------~~i~igAQnv~~~~~GA~TGEVSa~ 111 (241)
|+|||++|||||++..++.+|++.+..... ..+| ++|.+|||||++.+.||||||||++
T Consensus 1 ~~~~v~~NwKmn~~~~~~~~~~~~l~~~~~~~~~~~v~v~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~ 80 (250)
T PRK00042 1 RKPIIAGNWKMNKTLAEAKALVEELKAALPDADGVEVAVAPPFTALASVKEALKGSNIKLGAQNVHPEDSGAFTGEISAE 80 (250)
T ss_pred CCcEEEEEcccCcCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeEEEecccccccCCCccCccCHH
Confidence 578999999999999999999988865321 1121 4699999999999999999999999
Q ss_pred HHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCC--CCCc
Q 026249 112 QLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDN 189 (241)
Q Consensus 112 mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~--~~~~ 189 (241)
||||+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+|++++ .+++
T Consensus 81 mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~~ 160 (250)
T PRK00042 81 MLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFAN 160 (250)
T ss_pred HHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886 4799
Q ss_pred eEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 190 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 190 ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
++|||||+||||||++|||++++++|++||++++++|+ +++.+..|.|-|
T Consensus 161 ~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~~~IlYGG 210 (250)
T PRK00042 161 LVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EVAEKVRILYGG 210 (250)
T ss_pred EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cccCCceEEEcC
Confidence 99999999999999999999999999999999999999 889888888877
No 5
>PRK14566 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.3e-68 Score=478.50 Aligned_cols=188 Identities=40% Similarity=0.659 Sum_probs=174.1
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhccc--CCCc------------------ce-------eEeeeeeccccCCccc
Q 026249 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKL--EADV------------------DR-------IEIAAQNSWVGKGGAF 104 (241)
Q Consensus 52 ~rk~~I~gNWKmn~t~~~~~~~~~~l~~~~~--~~~v------------------~~-------i~igAQnv~~~~~GA~ 104 (241)
.|+|+|+||||||++.+++.+|++.+..... ..+| ++ |.+|||||++.+.|||
T Consensus 3 ~rk~~i~gNWKmn~~~~~~~~~~~~l~~~~~~~~v~v~v~Pp~~~L~~~~~~~~~~~~~~~g~~i~v~AQnv~~~~~Ga~ 82 (260)
T PRK14566 3 LRRPMVAGNWKMNGSAALAQELFKKFAGKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNVSQHDFGAY 82 (260)
T ss_pred CCCeEEEEECCcCcCHHHHHHHHHHHHhhcCCCCeeEEEECCHHHHHHHHHHhccCcccccCceEEEEecccccccCCCc
Confidence 5889999999999999999999998855321 1121 23 9999999999999999
Q ss_pred cccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcC
Q 026249 105 TGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI 184 (241)
Q Consensus 105 TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i 184 (241)
|||||++||+|+||+||||||||||.+|+|+|++|++|+++|+++||+||+||||++++|++|+|.++|.+||+..|+++
T Consensus 83 TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~ 162 (260)
T PRK14566 83 TGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKN 162 (260)
T ss_pred cCccCHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred C--CCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 185 P--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 185 ~--~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
. ++++++|||||+||||||++|+||+||++|.+||++|.+. +++++....|.|-|
T Consensus 163 ~~~~~~~ivIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGG 219 (260)
T PRK14566 163 GTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEV-SPFIGENIRILYGG 219 (260)
T ss_pred chhhcCcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhc-CccccccceEEecC
Confidence 3 5889999999999999999999999999999999999998 99999999999987
No 6
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=5.4e-68 Score=476.73 Aligned_cols=189 Identities=54% Similarity=0.902 Sum_probs=176.9
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhcccC---CCc------------------ceeEeeeeeccccCCccccccccH
Q 026249 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLE---ADV------------------DRIEIAAQNSWVGKGGAFTGEISV 110 (241)
Q Consensus 52 ~rk~~I~gNWKmn~t~~~~~~~~~~l~~~~~~---~~v------------------~~i~igAQnv~~~~~GA~TGEVSa 110 (241)
||+|+|++|||||++.+++.+|++.+...... .++ ++|.+|||||++.+.|||||||||
T Consensus 3 ~~k~~i~~NwKmn~~~~~~~~~~~~~~~~~~~~~~v~v~i~P~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~ 82 (255)
T PTZ00333 3 KRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEISA 82 (255)
T ss_pred CCCeEEEEEcccccCHHHHHHHHHHHHhhccccCCeeEEEECCHHHHHHHHHHhcCCCeeEEccccccccCCCccCcCCH
Confidence 78999999999999999999999988653321 121 468999999999999999999999
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCC--CCC
Q 026249 111 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWD 188 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~--~~~ 188 (241)
+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.++|.+||+.+|++++ .++
T Consensus 83 ~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~~ 162 (255)
T PTZ00333 83 EMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWD 162 (255)
T ss_pred HHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 478
Q ss_pred ceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 189 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 189 ~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
+++|||||+||||||++|+||+|+++|++||+.|.++|+.+++..+.|.|-|
T Consensus 163 ~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGG 214 (255)
T PTZ00333 163 NIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGG 214 (255)
T ss_pred eEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcC
Confidence 9999999999999999999999999999999999999999999999998877
No 7
>PLN02561 triosephosphate isomerase
Probab=100.00 E-value=7.5e-68 Score=475.43 Aligned_cols=189 Identities=58% Similarity=1.000 Sum_probs=176.3
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhc-cc---CCCc-----------------ceeEeeeeeccccCCccccccccH
Q 026249 52 SNKFFVGGNWKCNGTKESITKLVSDLNDA-KL---EADV-----------------DRIEIAAQNSWVGKGGAFTGEISV 110 (241)
Q Consensus 52 ~rk~~I~gNWKmn~t~~~~~~~~~~l~~~-~~---~~~v-----------------~~i~igAQnv~~~~~GA~TGEVSa 110 (241)
.|||+|+||||||++..++.+|++.+... .. ..+| .+|.+|||||++.+.||||||||+
T Consensus 2 ~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~ 81 (253)
T PLN02561 2 ARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEISA 81 (253)
T ss_pred CCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCCH
Confidence 37899999999999999999999998652 11 1121 368999999999999999999999
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCce
Q 026249 111 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV 190 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~i 190 (241)
+||+|+||+||||||||||++|+|+|++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.++++++.++++
T Consensus 82 ~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~i 161 (253)
T PLN02561 82 EMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANV 161 (253)
T ss_pred HHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777899
Q ss_pred EEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 191 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 191 vIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
+|||||+||||||++|||++++++|++||++|.++|+.+++....|.|-|
T Consensus 162 iIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGG 211 (253)
T PLN02561 162 VLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGG 211 (253)
T ss_pred EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeC
Confidence 99999999999999999999999999999999999999999998888876
No 8
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=100.00 E-value=1.3e-68 Score=477.67 Aligned_cols=186 Identities=49% Similarity=0.781 Sum_probs=170.4
Q ss_pred ceEEeecccccCHHHHHHHHHHHhhccc---CCCc------------------ceeEeeeeeccccCCccccccccHHHH
Q 026249 55 FFVGGNWKCNGTKESITKLVSDLNDAKL---EADV------------------DRIEIAAQNSWVGKGGAFTGEISVEQL 113 (241)
Q Consensus 55 ~~I~gNWKmn~t~~~~~~~~~~l~~~~~---~~~v------------------~~i~igAQnv~~~~~GA~TGEVSa~mL 113 (241)
|||++|||||++.+++.+|++.+.+... +.++ ++|.+|||||++.+.|||||||||+||
T Consensus 1 kii~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~mL 80 (244)
T PF00121_consen 1 KIIIGNWKMNGTGEEALEFLKELLNAKLPNKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEML 80 (244)
T ss_dssp SEEEEEETBSGSHHHHHHHHHHHHHHHCHTTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHHH
T ss_pred CEEEEehhhCcCHHHHHHHHHHHHhcccccCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHHH
Confidence 7999999999999999999999654332 1111 578999999999999999999999999
Q ss_pred HhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCC--CCCceE
Q 026249 114 KDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVV 191 (241)
Q Consensus 114 kd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~--~~~~iv 191 (241)
||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+|++++ ++++++
T Consensus 81 ~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~i 160 (244)
T PF00121_consen 81 KDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEELKNII 160 (244)
T ss_dssp HHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGGTCEE
T ss_pred HHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccccceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 578999
Q ss_pred EeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 192 IAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 192 IAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
|||||+||||||++|||++++++|++||++|+++|+.+++.+..|.|.|
T Consensus 161 IAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGG 209 (244)
T PF00121_consen 161 IAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGG 209 (244)
T ss_dssp EEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEES
T ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECC
Confidence 9999999999999999999999999999999999999999999999987
No 9
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=1.3e-67 Score=470.87 Aligned_cols=185 Identities=49% Similarity=0.718 Sum_probs=173.6
Q ss_pred ceEEeecccccCHHHHHHHHHHHhhccc---CCCc------------------ceeEeeeeeccccCCccccccccHHHH
Q 026249 55 FFVGGNWKCNGTKESITKLVSDLNDAKL---EADV------------------DRIEIAAQNSWVGKGGAFTGEISVEQL 113 (241)
Q Consensus 55 ~~I~gNWKmn~t~~~~~~~~~~l~~~~~---~~~v------------------~~i~igAQnv~~~~~GA~TGEVSa~mL 113 (241)
|||++|||||++.+++.+|++.+..... ..++ ++|.+|||||++.+.||||||||++||
T Consensus 1 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~mL 80 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEML 80 (242)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHhhccccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHHH
Confidence 6899999999999999999998865432 1121 369999999999999999999999999
Q ss_pred HhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEe
Q 026249 114 KDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIA 193 (241)
Q Consensus 114 kd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIA 193 (241)
||+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+++.+||+..|++++.+++++||
T Consensus 81 ~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~~iIA 160 (242)
T cd00311 81 KDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIA 160 (242)
T ss_pred HHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred ecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 194 YEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 194 YEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
|||+||||||++|||++++++|++||+++.+.+++ ++.++.|.|-|
T Consensus 161 YEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~-~~~~~~IlYGG 206 (242)
T cd00311 161 YEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGE-VAEKVRILYGG 206 (242)
T ss_pred ECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhccc-ccCceeEEECC
Confidence 99999999999999999999999999999999998 89999998877
No 10
>PRK15492 triosephosphate isomerase; Provisional
Probab=100.00 E-value=2.1e-67 Score=474.06 Aligned_cols=188 Identities=34% Similarity=0.488 Sum_probs=173.6
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhcc------cCCCc----------------------ceeEeeeeeccccCCcc
Q 026249 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAK------LEADV----------------------DRIEIAAQNSWVGKGGA 103 (241)
Q Consensus 52 ~rk~~I~gNWKmn~t~~~~~~~~~~l~~~~------~~~~v----------------------~~i~igAQnv~~~~~GA 103 (241)
||||+|+||||||++..++.+|++.+.... ...+| ++|.+|||||++.+.||
T Consensus 1 Mrk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~P~~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga 80 (260)
T PRK15492 1 MKKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQ 80 (260)
T ss_pred CCCCEEEEECCcCCCHHHHHHHHHHHHhhhhhcccCCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCC
Confidence 589999999999999999999999885431 11121 15899999999999999
Q ss_pred ccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhc
Q 026249 104 FTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADA 183 (241)
Q Consensus 104 ~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~ 183 (241)
|||||||+||||+||+||||||||||++|+|+|++|++|+++|+++||+||+||||++++|+.|+|.++|.+||+.+|++
T Consensus 81 ~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~ 160 (260)
T PRK15492 81 FTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHG 160 (260)
T ss_pred ccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCceEEeecCcccccC-CCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 184 IP--SWDNVVIAYEPVWAIGT-GKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 184 i~--~~~~ivIAYEPvWAIGT-G~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
++ .+++++|||||+||||| |++||||+||++|++||++|.+.|++. +..+.|.|-|
T Consensus 161 ~~~~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~-~~~irILYGG 219 (260)
T PRK15492 161 INPDQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDA-GDDIPVFYGG 219 (260)
T ss_pred CCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEcC
Confidence 86 57899999999999998 999999999999999999999999987 7888888876
No 11
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-67 Score=471.20 Aligned_cols=187 Identities=48% Similarity=0.696 Sum_probs=173.4
Q ss_pred cCcceEEeecccccCHHHHHHHHHHHhhcccC--CC--c----------------c--eeEeeeeeccccCCcccccccc
Q 026249 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLE--AD--V----------------D--RIEIAAQNSWVGKGGAFTGEIS 109 (241)
Q Consensus 52 ~rk~~I~gNWKmn~t~~~~~~~~~~l~~~~~~--~~--v----------------~--~i~igAQnv~~~~~GA~TGEVS 109 (241)
||+|+|+||||||++..++.+|++.+...... .+ + . +|.+|||||++.++||||||||
T Consensus 1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS 80 (251)
T COG0149 1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEIS 80 (251)
T ss_pred CCCcEEEEEcccCcChHHHHHHHHHHhhcccccccceeEEEeCCHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCC
Confidence 68899999999999999999999988754321 11 1 2 5789999999999999999999
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDN 189 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ 189 (241)
++||+|+||+||||||||||.+|+|+|++|++|+++|+++||+||+||||++++||+|+|.+||.+||...|.+++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~ 160 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEAN 160 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875589
Q ss_pred eEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 190 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 190 ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
++|||||+||||||++||+++++++|++||.++.++||++ .++-|.|-|
T Consensus 161 ~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~--~~v~IlYGG 209 (251)
T COG0149 161 IVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE--EKVRILYGG 209 (251)
T ss_pred eEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeC
Confidence 9999999999999999999999999999999999999988 777777765
No 12
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.9e-65 Score=504.45 Aligned_cols=191 Identities=46% Similarity=0.715 Sum_probs=178.9
Q ss_pred hhcCcceEEeecccccCHHHHHHHHHHHhhcccC--CCc------------------ceeEeeeeeccccCCcccccccc
Q 026249 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLE--ADV------------------DRIEIAAQNSWVGKGGAFTGEIS 109 (241)
Q Consensus 50 ~~~rk~~I~gNWKmn~t~~~~~~~~~~l~~~~~~--~~v------------------~~i~igAQnv~~~~~GA~TGEVS 109 (241)
+.||+|+|+||||||++.+++.+|++.+.....+ .+| ++|.+|||||++.++||||||||
T Consensus 394 s~Mrk~~i~gNWKMn~~~~~~~~~~~~l~~~~~~~~~~v~v~Pp~~~L~~~~~~l~~~~i~vgAQnv~~~~~GA~TGEVS 473 (645)
T PRK13962 394 KNPRKPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPSVKEAVDGSNIKLGAQNVFYEEKGAYTGEIS 473 (645)
T ss_pred cCCCCcEEEEECCcCcCHHHHHHHHHHHHhhccCCCCeEEEECCHHHHHHHHHHhcCCCeEEEcccccccccCCccCcCC
Confidence 4589999999999999999999999888653221 121 46999999999999999999999
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCC--CC
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SW 187 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~--~~ 187 (241)
|+||||+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+|++++ ++
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~ 553 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV 553 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886 58
Q ss_pred CceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 188 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 188 ~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
+++|||||||||||||++||||+||++|++||++|++.|+.++|.++.|.|-|
T Consensus 554 ~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGG 606 (645)
T PRK13962 554 KKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGG 606 (645)
T ss_pred CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecC
Confidence 89999999999999999999999999999999999999999999999999987
No 13
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=100.00 E-value=2e-64 Score=471.66 Aligned_cols=187 Identities=35% Similarity=0.508 Sum_probs=171.9
Q ss_pred CcceEEeecccccCHHHHHHHHHHHhhcc------cCCCc----------------c------eeEeeeeeccccCCccc
Q 026249 53 NKFFVGGNWKCNGTKESITKLVSDLNDAK------LEADV----------------D------RIEIAAQNSWVGKGGAF 104 (241)
Q Consensus 53 rk~~I~gNWKmn~t~~~~~~~~~~l~~~~------~~~~v----------------~------~i~igAQnv~~~~~GA~ 104 (241)
|+|+|+||||||++.+++.+|+..|.... ...++ . +|.+|||||++.+.|||
T Consensus 3 r~~~v~gNWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga~ 82 (355)
T PRK14905 3 KKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKGQF 82 (355)
T ss_pred CceEEEEECCcCCCHHHHHHHHHHHHHhhhhccccCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCCc
Confidence 77999999999999999999998884421 11111 1 58999999999999999
Q ss_pred cccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcC
Q 026249 105 TGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAI 184 (241)
Q Consensus 105 TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i 184 (241)
||||||+||+|+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|++|++.+++.+||+..|+++
T Consensus 83 TGEVS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v 162 (355)
T PRK14905 83 TGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGV 162 (355)
T ss_pred cCcCCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C--CCCceEEeecCcccccC-CCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 185 P--SWDNVVIAYEPVWAIGT-GKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 185 ~--~~~~ivIAYEPvWAIGT-G~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
+ ++.+++|||||+||||| |++|||++||++|++||++|.+.|+.. +..+-|.|-|
T Consensus 163 ~~~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~-~~~v~ILYGG 220 (355)
T PRK14905 163 SAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE-SKKIPVLYGG 220 (355)
T ss_pred CHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEeC
Confidence 6 58899999999999998 789999999999999999999999888 7777888876
No 14
>PRK14565 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.3e-63 Score=444.43 Aligned_cols=166 Identities=38% Similarity=0.663 Sum_probs=154.2
Q ss_pred cceEEeecccccCHHHHHHHHHHHhhccc--C--CCc----------------ceeEeeeeeccccCCccccccccHHHH
Q 026249 54 KFFVGGNWKCNGTKESITKLVSDLNDAKL--E--ADV----------------DRIEIAAQNSWVGKGGAFTGEISVEQL 113 (241)
Q Consensus 54 k~~I~gNWKmn~t~~~~~~~~~~l~~~~~--~--~~v----------------~~i~igAQnv~~~~~GA~TGEVSa~mL 113 (241)
||+|+||||||++.+++.+|++++..... + .++ ++|.+|||||++.+.|||||||||+||
T Consensus 2 ~~~v~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~v~v~iaP~~~~l~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~mL 81 (237)
T PRK14565 2 SFLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECNPNIKLGAQNCFYGSSGGYTGEISAKML 81 (237)
T ss_pred CcEEEEECccccCHHHHHHHHHHHHhhccccCCCceEEEECCHHHHHHHHHhcCCceEEecccccccCCCccCccCHHHH
Confidence 68999999999999999999999865321 1 121 468999999999999999999999999
Q ss_pred HhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEe
Q 026249 114 KDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIA 193 (241)
Q Consensus 114 kd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIA 193 (241)
||+||+||||||||||++|+|+|+.|++|+++|+++||+||+||||++++|+.|++.++|.+||+..+.+ +++++||
T Consensus 82 kd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~---~~~ivIA 158 (237)
T PRK14565 82 KECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPK---HGEFIIA 158 (237)
T ss_pred HHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcC---CCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998864 4689999
Q ss_pred ecCcccccCCCCCCHHHHHHHHHHHHHHH
Q 026249 194 YEPVWAIGTGKVATPEQAQEVHAALRDWL 222 (241)
Q Consensus 194 YEPvWAIGTG~~Aspe~iqe~~~~IR~~l 222 (241)
|||+||||||++|+||+|+++|++||++.
T Consensus 159 YEPvWAIGtG~~a~~e~i~~~~~~Ir~~~ 187 (237)
T PRK14565 159 YEPVWAIGGSTIPSNDAIAEAFEIIRSYD 187 (237)
T ss_pred ECCHHHhCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999973
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=100.00 E-value=3.7e-55 Score=382.75 Aligned_cols=157 Identities=33% Similarity=0.409 Sum_probs=136.1
Q ss_pred eEEeecc-cccCHHHHHHHHHHHhhccc---CCCc---------------ceeEeeeeeccccCCccccccccHHHHHhc
Q 026249 56 FVGGNWK-CNGTKESITKLVSDLNDAKL---EADV---------------DRIEIAAQNSWVGKGGAFTGEISVEQLKDI 116 (241)
Q Consensus 56 ~I~gNWK-mn~t~~~~~~~~~~l~~~~~---~~~v---------------~~i~igAQnv~~~~~GA~TGEVSa~mLkd~ 116 (241)
||+|||| ||++..+..+|++.+..... +.+| .+|.+|||||++.+.|||||||||+||||+
T Consensus 1 ~i~~NwK~mn~~~~~~~~~~~~~~~~~~~~~~~~v~v~Pp~~~L~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~mLkd~ 80 (205)
T TIGR00419 1 LVIGNWKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREVEIPVYAQHVDAVLSGAHTGEISAEMLKDI 80 (205)
T ss_pred CEEEEhhhcCCCHHHHHHHHHHHHhhccccCCcEEEEECCHHHHHHHHHhcCceEEecccccccCCCccCcCCHHHHHHc
Confidence 6899999 99999999999877754321 1121 248999999999999999999999999999
Q ss_pred CCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEeecC
Q 026249 117 GCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEP 196 (241)
Q Consensus 117 G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIAYEP 196 (241)
||+|||||||||| |+|+| |++|+++|+++||+||+|| +++.+|+... .+++++|||||
T Consensus 81 G~~~viiGHSERR--f~Etd--i~~Kv~~a~~~gl~~IvCi-------------~~v~~q~~~~-----~~~~~vIAYEP 138 (205)
T TIGR00419 81 GAKGTLINHSERR--MKLAD--IEKKIARLKELGLTSVVCT-------------NNVLTTAAAA-----ALEPDVVAVEP 138 (205)
T ss_pred CCCEEEECcccCC--CCccH--HHHHHHHHHHCCCEEEEEE-------------HHHHHHHHhh-----hhcCeEEEECC
Confidence 9999999999999 99999 9999999999999999999 3455565432 26899999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcccceeeecccC
Q 026249 197 VWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVLSMEG 240 (241)
Q Consensus 197 vWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~a~~~~~~~~~ 240 (241)
+||||||++|||+++|++|++|| ++.+++.++.|.|-|
T Consensus 139 vWAIGtG~~as~~~~~~v~~~ir------~~~~~~~~~~IlYGG 176 (205)
T TIGR00419 139 PELIGTGIPVSPAQPEVVHGSVR------AVKEVNESVRVLCGA 176 (205)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHH------hhhhhcCCceEEEeC
Confidence 99999999999999999999999 567777777887866
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=100.00 E-value=9e-37 Score=266.97 Aligned_cols=148 Identities=26% Similarity=0.283 Sum_probs=126.6
Q ss_pred cCcceEEeeccccc--CHHHHHHHHHHHhhcccC--CCc---------------ceeEeeeeeccccCCccccccccHHH
Q 026249 52 SNKFFVGGNWKCNG--TKESITKLVSDLNDAKLE--ADV---------------DRIEIAAQNSWVGKGGAFTGEISVEQ 112 (241)
Q Consensus 52 ~rk~~I~gNWKmn~--t~~~~~~~~~~l~~~~~~--~~v---------------~~i~igAQnv~~~~~GA~TGEVSa~m 112 (241)
||+|||+||||||+ +..++.+|++.+...... .++ .++.++|||+++.+.|+||||+|++|
T Consensus 1 m~~~~~~~n~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~ 80 (223)
T PRK04302 1 MKYPIILVNFKTYPEATGKDALEIAKAAEKVSKETGVRIAVAPQALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEA 80 (223)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHhccccCCCEEEEECCHHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHH
Confidence 57899999999999 689999998888663221 121 46899999999999999999999999
Q ss_pred HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEE
Q 026249 113 LKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVI 192 (241)
Q Consensus 113 Lkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivI 192 (241)
|+|+||++||+||||||.+|+| +++|++.|.++||.||+|+||.. |++.+. ...+.+|
T Consensus 81 l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~~~--------------~~~~~~----~~~~~~I 138 (223)
T PRK04302 81 VKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNNPE--------------TSAAAA----ALGPDYV 138 (223)
T ss_pred HHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCCHH--------------HHHHHh----cCCCCEE
Confidence 9999999999999999999888 88999999999999999999942 333322 3456799
Q ss_pred eecCcccccCCCC---CCHHHHHHHHHHHHHH
Q 026249 193 AYEPVWAIGTGKV---ATPEQAQEVHAALRDW 221 (241)
Q Consensus 193 AYEPvWAIGTG~~---Aspe~iqe~~~~IR~~ 221 (241)
+|||+|+||||+. ++|++++++++.||+.
T Consensus 139 ~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~ 170 (223)
T PRK04302 139 AVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV 170 (223)
T ss_pred EEeCccccccCCCCCcCCHHHHHHHHHHHHhc
Confidence 9999999999976 8899999999999975
No 17
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.98 E-value=0.082 Score=50.02 Aligned_cols=99 Identities=17% Similarity=0.282 Sum_probs=70.5
Q ss_pred ccCCcccccc---ccHHHHHhc-CCCEEEe-cccccccccCCChHHHHHHHHHHHHCCCcE-EEEeCCcHHHHHcCChHH
Q 026249 98 VGKGGAFTGE---ISVEQLKDI-GCKWVVL-GHSERRHVIGEDDQFIGKKAAYALSEGLGV-IACIGEQLQEREAGKTFD 171 (241)
Q Consensus 98 ~~~~GA~TGE---VSa~mLkd~-G~~~viI-GHSERR~~f~Etd~~I~~Kv~~Al~~GL~p-IlCIGEtleere~g~t~~ 171 (241)
+...|+||-+ -.+.|-+++ |.+|+=+ =|.|+|.++.+..+.| ++.+...+.||.+ +||.....+.|
T Consensus 141 pNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v-~aa~~L~~~Gf~v~~yc~~d~~~a~------- 212 (326)
T PRK11840 141 PNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETL-KATEILVKEGFQVMVYCSDDPIAAK------- 212 (326)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH-------
Confidence 5677999987 457778887 5677744 3778999888844333 3344444449999 99999887655
Q ss_pred HHHHHHHHHHhcCCCCCceEEeecC-cccccCCCCC-CHHHHHHHHHH
Q 026249 172 VCFQQLKAYADAIPSWDNVVIAYEP-VWAIGTGKVA-TPEQAQEVHAA 217 (241)
Q Consensus 172 vl~~QL~~~l~~i~~~~~ivIAYEP-vWAIGTG~~A-spe~iqe~~~~ 217 (241)
.+.. ... +|+|| .-.||||+.. +|+.++.+.+.
T Consensus 213 --------~l~~---~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~ 247 (326)
T PRK11840 213 --------RLED---AGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEG 247 (326)
T ss_pred --------HHHh---cCC--EEEeeccccccCCCCCCCHHHHHHHHHc
Confidence 2332 233 89999 9999999964 88888777665
No 18
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.81 E-value=0.26 Score=44.84 Aligned_cols=87 Identities=24% Similarity=0.226 Sum_probs=60.2
Q ss_pred cHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEE-EeCCcHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 026249 109 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIA-CIGEQLQEREAGKTFDVCFQQLKAYADAIPSW 187 (241)
Q Consensus 109 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIl-CIGEtleere~g~t~~vl~~QL~~~l~~i~~~ 187 (241)
-.++++++|++.+||- ...+ +.+..=+..+.++||.+|. |.-.+.++| ++.+. ..
T Consensus 109 f~~~~~~aGvdGviip----DLp~----ee~~~~~~~~~~~gl~~I~lvap~t~~er------------i~~i~----~~ 164 (258)
T PRK13111 109 FAADAAEAGVDGLIIP----DLPP----EEAEELRAAAKKHGLDLIFLVAPTTTDER------------LKKIA----SH 164 (258)
T ss_pred HHHHHHHcCCcEEEEC----CCCH----HHHHHHHHHHHHcCCcEEEEeCCCCCHHH------------HHHHH----Hh
Confidence 4899999999999995 3444 3466777888999999998 888876666 11111 12
Q ss_pred CceEEeecCccccc-CCC-CCCHHHHHHHHHHHHHH
Q 026249 188 DNVVIAYEPVWAIG-TGK-VATPEQAQEVHAALRDW 221 (241)
Q Consensus 188 ~~ivIAYEPvWAIG-TG~-~Aspe~iqe~~~~IR~~ 221 (241)
++-.|.| +-.+| ||. +..++.+.+.++.||+.
T Consensus 165 s~gfIY~--vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 165 ASGFVYY--VSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred CCCcEEE--EeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 3334555 44577 676 35567778888888874
No 19
>PLN02591 tryptophan synthase
Probab=88.32 E-value=1.4 Score=40.12 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.0
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCc-HHHH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ-LQER 164 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEt-leer 164 (241)
.+.+++.|++.+|+= ...+. ....-...|.++||.+|.||--+ .++|
T Consensus 99 ~~~~~~aGv~Gviip----DLP~e----e~~~~~~~~~~~gl~~I~lv~Ptt~~~r 146 (250)
T PLN02591 99 MATIKEAGVHGLVVP----DLPLE----ETEALRAEAAKNGIELVLLTTPTTPTER 146 (250)
T ss_pred HHHHHHcCCCEEEeC----CCCHH----HHHHHHHHHHHcCCeEEEEeCCCCCHHH
Confidence 688999999999997 33343 35567778899999999999544 3455
No 20
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=81.28 E-value=11 Score=31.62 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=70.5
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcE-EEEeCCcHHHHHcCChHHHHHHHHHHHH
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV-IACIGEQLQEREAGKTFDVCFQQLKAYA 181 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~p-IlCIGEtleere~g~t~~vl~~QL~~~l 181 (241)
.|.|++....||+.|+++|++-=+|=..+ .|.....-++.|.++||.. ++...... +..--.+|.+..+
T Consensus 5 ~~qg~~dw~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~G~Yhf~~~~-------~~~~a~~qA~~f~ 74 (181)
T PF01183_consen 5 HYQGDIDWQKVKAAGIDFVIIKATEGTSY---VDPYFESNIKNAKAAGLPVGAYHFARAT-------NSSDAEAQADYFL 74 (181)
T ss_dssp GGGSS-SHHHHHHTTEEEEEEEEEETTTE---E-TTHHHHHHHHHHTTSEEEEEEE--TT-------THCHHHHHHHHHH
T ss_pred CCCCccCHHHHHHCCCCEEEEEeeeCCCe---ecchHHHHHHHHHHcCCeEEEEEEeccC-------CcccHHHHHHHHH
Confidence 47899999999999999999988887654 4456778899999999986 44444331 0112345666666
Q ss_pred hcC-C---CCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 026249 182 DAI-P---SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQ 228 (241)
Q Consensus 182 ~~i-~---~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~ 228 (241)
+.+ . ..-+++|-+|-. .....+.+...+.+....+.+.+..|.
T Consensus 75 ~~~~~~~~~~~~~~lD~E~~----~~~~~~~~~~~~~~~~f~~~~~~~~G~ 121 (181)
T PF01183_consen 75 NQVKGGDPGDLPPALDVEDD----KSNNPSKSDNTAWVKAFLDEVEKAAGY 121 (181)
T ss_dssp HCTHTSSTSCS-EEEEE-S-----GGCCSSHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHhcccCCCcceEEEecccc----ccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 666 3 223467888844 233455666666666656666555664
No 21
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.13 E-value=36 Score=30.26 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDN 189 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ 189 (241)
.+.+++.|++++++ |- +.-|..+....=++.+.++|+.+++|+.-+.. .+ .++.+++..+. =
T Consensus 94 i~~~~~~Gadgvii-~d----lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~-------~e----~l~~~~~~~~~--~ 155 (244)
T PRK13125 94 LNMARDVGADGVLF-PD----LLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP-------DL----LIHRLSKLSPL--F 155 (244)
T ss_pred HHHHHHcCCCEEEE-CC----CCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC-------HH----HHHHHHHhCCC--E
Confidence 67899999999999 31 11254455777888999999999999997531 11 22333322111 1
Q ss_pred eEEeecCcccccCCCCCCHHHHHHHHHHHHHHH
Q 026249 190 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 222 (241)
Q Consensus 190 ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l 222 (241)
+++..+|.- |.. =++.+.+.++.+|++.
T Consensus 156 l~msv~~~~----g~~-~~~~~~~~i~~lr~~~ 183 (244)
T PRK13125 156 IYYGLRPAT----GVP-LPVSVERNIKRVRNLV 183 (244)
T ss_pred EEEEeCCCC----CCC-chHHHHHHHHHHHHhc
Confidence 334677755 333 3555666777777665
No 22
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=78.91 E-value=3.4 Score=37.44 Aligned_cols=52 Identities=25% Similarity=0.220 Sum_probs=43.8
Q ss_pred CCccccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCc
Q 026249 100 KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 160 (241)
Q Consensus 100 ~~GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEt 160 (241)
-.|+|+.|.-..|+++.|+++++.=-| |.+ -...|+.+|.+.|+.+|+ |.-+
T Consensus 173 m~gPfs~e~n~aL~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP 224 (248)
T PRK08057 173 LRGPFSLELERALLRQHRIDVVVTKNS------GGA--GTEAKLEAARELGIPVVM-IARP 224 (248)
T ss_pred eeCCCCHHHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCC
Confidence 459999999999999999999998666 443 467899999999998887 5544
No 23
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=75.87 E-value=11 Score=34.68 Aligned_cols=93 Identities=17% Similarity=0.332 Sum_probs=58.5
Q ss_pred ccCCcccccc---ccHHHHHhcC-CCEE---EecccccccccCCChHHHHHHHHHHHHCCCcEE-EEeCCcHHHHHcCCh
Q 026249 98 VGKGGAFTGE---ISVEQLKDIG-CKWV---VLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI-ACIGEQLQEREAGKT 169 (241)
Q Consensus 98 ~~~~GA~TGE---VSa~mLkd~G-~~~v---iIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI-lCIGEtleere~g~t 169 (241)
+...|+||-+ -.+.|-++++ .+|+ ++|. -+.++.+..+.| ++.+...+.||.++ +|.....+.|
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~Llpd~~~tv-~aa~~L~~~Gf~vlpyc~dd~~~ar----- 138 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGD--DKTLLPDPIETL-KAAEILVKEGFTVLPYCTDDPVLAK----- 138 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--ccccccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH-----
Confidence 5677999877 3566777775 4666 4444 455666633222 34444445599999 9999987555
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEeecCc--ccccCCCCC-CHHHHHHH
Q 026249 170 FDVCFQQLKAYADAIPSWDNVVIAYEPV--WAIGTGKVA-TPEQAQEV 214 (241)
Q Consensus 170 ~~vl~~QL~~~l~~i~~~~~ivIAYEPv--WAIGTG~~A-spe~iqe~ 214 (241)
.|.. ....+| |+ -.||||... +|+.++.+
T Consensus 139 ----------~l~~---~G~~~v---mPlg~pIGsg~Gi~~~~~I~~I 170 (248)
T cd04728 139 ----------RLED---AGCAAV---MPLGSPIGSGQGLLNPYNLRII 170 (248)
T ss_pred ----------HHHH---cCCCEe---CCCCcCCCCCCCCCCHHHHHHH
Confidence 2321 233344 99 679999854 77776633
No 24
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=74.89 E-value=24 Score=30.79 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=70.1
Q ss_pred eEEeecccccCHHHHHHHHHHHhhcccCCCcceeEeeeeeccccCCccccccccHHHHHhcCCCEEEec-ccc-----cc
Q 026249 56 FVGGNWKCNGTKESITKLVSDLNDAKLEADVDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLG-HSE-----RR 129 (241)
Q Consensus 56 ~I~gNWKmn~t~~~~~~~~~~l~~~~~~~~v~~i~igAQnv~~~~~GA~TGEVSa~mLkd~G~~~viIG-HSE-----RR 129 (241)
....||-|-.......+.++.+.+.-. ..|++... ...+-+--..+|++.|++.+.++ ... +|
T Consensus 2 ~~~~~~~~~~~~~~l~e~~~~~~e~G~----~~vEl~~~-------~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~ 70 (254)
T TIGR03234 2 RFAANLSMLFTELPFLERFAAAAQAGF----TGVEYLFP-------YDWDAEALKARLAAAGLEQVLFNLPAGDWAAGER 70 (254)
T ss_pred ceeEehhHhhcCCCHHHHHHHHHHcCC----CEEEecCC-------ccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCC
Confidence 345676655432233334444333211 35666421 11223333678889999988663 111 12
Q ss_pred cc--cCCCh----HHHHHHHHHHHHCCCcEEEE-eCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEeecCc--ccc
Q 026249 130 HV--IGEDD----QFIGKKAAYALSEGLGVIAC-IGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPV--WAI 200 (241)
Q Consensus 130 ~~--f~Etd----~~I~~Kv~~Al~~GL~pIlC-IGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIAYEPv--WAI 200 (241)
.+ +.+.+ +.+.+-+..|.+.|...|.| .|-........+..+...+.|+.+.+ ...-..+.|++||. |..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~-~A~~~gi~l~lE~~~~~~~ 149 (254)
T TIGR03234 71 GIACLPGREEEFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAAD-ALDRIGLTLLIEPINSFDM 149 (254)
T ss_pred ccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCCEEEEEECCcccC
Confidence 21 12222 34445667788899988765 44210000000011222333443321 11234688999985 322
Q ss_pred -cCCCCCCHHHHHHHHHHH
Q 026249 201 -GTGKVATPEQAQEVHAAL 218 (241)
Q Consensus 201 -GTG~~Aspe~iqe~~~~I 218 (241)
|+. ..+++++.++++.+
T Consensus 150 ~~~~-l~t~~~~~~li~~v 167 (254)
T TIGR03234 150 PGFF-LTTTEQALAVIDDV 167 (254)
T ss_pred CCCh-hcCHHHHHHHHHHh
Confidence 221 24666666555544
No 25
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=74.49 E-value=9.8 Score=32.98 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=35.3
Q ss_pred ccccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCC-CcEEEEeC
Q 026249 102 GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG-LGVIACIG 158 (241)
Q Consensus 102 GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~G-L~pIlCIG 158 (241)
|+|+.+ .+++++.|++++++.+++++..-+|. +..-++.+.+.| +..++++-
T Consensus 79 g~~~~~--~~~a~~aGad~I~~~~~~~~~p~~~~---~~~~i~~~~~~g~~~iiv~v~ 131 (219)
T cd04729 79 TPTIEE--VDALAAAGADIIALDATDRPRPDGET---LAELIKRIHEEYNCLLMADIS 131 (219)
T ss_pred CCCHHH--HHHHHHcCCCEEEEeCCCCCCCCCcC---HHHHHHHHHHHhCCeEEEECC
Confidence 555554 48999999999999999987433333 444555566666 76666554
No 26
>PRK00208 thiG thiazole synthase; Reviewed
Probab=72.72 E-value=15 Score=33.87 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=56.4
Q ss_pred ccCCcccccc---ccHHHHHhcC-CCEE---EecccccccccCCChHHHHHHHHHHHHCCCcEE-EEeCCcHHHHHcCCh
Q 026249 98 VGKGGAFTGE---ISVEQLKDIG-CKWV---VLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI-ACIGEQLQEREAGKT 169 (241)
Q Consensus 98 ~~~~GA~TGE---VSa~mLkd~G-~~~v---iIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI-lCIGEtleere~g~t 169 (241)
+...|+||-| -.+.|-++++ .+|+ +||. .+.++.+..+.| ++.+...+.||.++ +|.....+.+
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~llpd~~~tv-~aa~~L~~~Gf~vlpyc~~d~~~ak----- 138 (250)
T PRK00208 67 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGD--DKTLLPDPIETL-KAAEILVKEGFVVLPYCTDDPVLAK----- 138 (250)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--CCCCCcCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH-----
Confidence 5677999887 3566777765 4665 4554 445555533222 34444445599999 9999886555
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEeecCc--ccccCCCCC-CHHHHH
Q 026249 170 FDVCFQQLKAYADAIPSWDNVVIAYEPV--WAIGTGKVA-TPEQAQ 212 (241)
Q Consensus 170 ~~vl~~QL~~~l~~i~~~~~ivIAYEPv--WAIGTG~~A-spe~iq 212 (241)
.|.. ....+| |+ -.||||+.. +|+.++
T Consensus 139 ----------~l~~---~G~~~v---mPlg~pIGsg~gi~~~~~i~ 168 (250)
T PRK00208 139 ----------RLEE---AGCAAV---MPLGAPIGSGLGLLNPYNLR 168 (250)
T ss_pred ----------HHHH---cCCCEe---CCCCcCCCCCCCCCCHHHHH
Confidence 2321 233444 99 569999864 666644
No 27
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=72.54 E-value=20 Score=31.52 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=73.2
Q ss_pred EEeecccccCHHHHHHHHHHHhhcccCCCcceeEeeeeeccccCCccccccccHHHHHhcCCCEEEe--ccc-----ccc
Q 026249 57 VGGNWKCNGTKESITKLVSDLNDAKLEADVDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVL--GHS-----ERR 129 (241)
Q Consensus 57 I~gNWKmn~t~~~~~~~~~~l~~~~~~~~v~~i~igAQnv~~~~~GA~TGEVSa~mLkd~G~~~viI--GHS-----ERR 129 (241)
..+||-|-...-...+.++.+.+.-. ..|++.. + ...+=+--.++|++.|.+.+.. +++ +|.
T Consensus 4 ~~~~~~~~~~~~~l~~~l~~~a~~Gf----~~VEl~~----~---~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 72 (258)
T PRK09997 4 FSANLSMLFGEYDFLARFEKAAQCGF----RGVEFMF----P---YDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERG 72 (258)
T ss_pred eeeeeehhccCCCHHHHHHHHHHhCC----CEEEEcC----C---CCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCc
Confidence 56777765433233333444433222 3577642 1 1123344556788999998763 332 221
Q ss_pred c-ccCCCh----HHHHHHHHHHHHCCCcEEEEe-CCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEeecCc-c-ccc
Q 026249 130 H-VIGEDD----QFIGKKAAYALSEGLGVIACI-GEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPV-W-AIG 201 (241)
Q Consensus 130 ~-~f~Etd----~~I~~Kv~~Al~~GL~pIlCI-GEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIAYEPv-W-AIG 201 (241)
. +..+.+ +.+.+-+..|.+.|...|.|. |............+.+.+.|..+.+. ..-..+.|+|||. + ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 73 IACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANM-LMKEDILLLIEPINHFDIP 151 (258)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHcCCEEEEEeCCCcCCC
Confidence 1 112222 336777888999999988774 42110000011123334444433221 1224689999984 2 121
Q ss_pred CCCCCCHHHHHHHHHHH
Q 026249 202 TGKVATPEQAQEVHAAL 218 (241)
Q Consensus 202 TG~~Aspe~iqe~~~~I 218 (241)
+.-..+++++.++++.+
T Consensus 152 ~~~~~~~~~~~~ll~~v 168 (258)
T PRK09997 152 GFHLTGTRQALKLIDDV 168 (258)
T ss_pred CCccCCHHHHHHHHHHh
Confidence 22235666665555443
No 28
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=71.96 E-value=63 Score=27.68 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=43.6
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEE----EEeCC
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI----ACIGE 159 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI----lCIGE 159 (241)
.|.|.|....+|..|+++|||==+|--.+ .|.....-++.|.++||.+= .|.+.
T Consensus 8 ~~qg~idw~~vk~~g~~fviiKateG~~~---~D~~~~~n~~~A~~aGl~~G~Yhf~~~~~ 65 (199)
T cd06412 8 GHQGSVDWSGAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIRGAYHFALPDQ 65 (199)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEEecCCCc---cChhHHHHHHHHHHcCCceEEEEEeecCC
Confidence 46789999999999999999988876543 46778899999999999653 45543
No 29
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=70.80 E-value=59 Score=29.03 Aligned_cols=107 Identities=22% Similarity=0.208 Sum_probs=58.8
Q ss_pred ccccccccHHHHHhcCCCEEEecccc----c-cccc-CCChHHHHHHHHHHHHCCCcE----EEEeCCcHHHHHcCChHH
Q 026249 102 GAFTGEISVEQLKDIGCKWVVLGHSE----R-RHVI-GEDDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFD 171 (241)
Q Consensus 102 GA~TGEVSa~mLkd~G~~~viIGHSE----R-R~~f-~Etd~~I~~Kv~~Al~~GL~p----IlCIGEtleere~g~t~~ 171 (241)
|..|-|. .+.||++|++.+.+| -| - +.+. +.+-+..-+-++.+.++|+.+ |+-.||+.++..
T Consensus 119 g~~~~e~-l~~Lk~aG~~~v~i~-~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~------ 190 (296)
T TIGR00433 119 GLLDPEQ-AKRLKDAGLDYYNHN-LDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRI------ 190 (296)
T ss_pred CCCCHHH-HHHHHHcCCCEEEEc-ccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHH------
Confidence 4444332 556778899999886 22 1 1122 234455667788999999985 555678765542
Q ss_pred HHHHHHHHHHhcCCCCCceEE-eecCcccccCC----CCCCHHHHHHHHHHHHHHHH
Q 026249 172 VCFQQLKAYADAIPSWDNVVI-AYEPVWAIGTG----KVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 172 vl~~QL~~~l~~i~~~~~ivI-AYEPvWAIGTG----~~Aspe~iqe~~~~IR~~l~ 223 (241)
+-+. .+..+. .+.+.+ .+=|. =||- .++++++.-++++..|..+.
T Consensus 191 ---~~~~-~l~~l~-~~~i~l~~l~p~--~gT~l~~~~~~s~~~~~~~ia~~r~~lp 240 (296)
T TIGR00433 191 ---GLAL-ALANLP-PESVPINFLVKI--KGTPLADNKELSADDALKTIALARIIMP 240 (296)
T ss_pred ---HHHH-HHHhCC-CCEEEeeeeEEc--CCCccCCCCCCCHHHHHHHHHHHHHHCC
Confidence 1111 111111 111111 12232 1442 25778888888888888764
No 30
>PRK01060 endonuclease IV; Provisional
Probab=70.75 E-value=26 Score=31.01 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=54.1
Q ss_pred HHHHhcCCCEE-EecccccccccCCChH--------HHHHHHHHHHHCCCcEE-EEeCCcHHHHHcCChHHHHHHHHHHH
Q 026249 111 EQLKDIGCKWV-VLGHSERRHVIGEDDQ--------FIGKKAAYALSEGLGVI-ACIGEQLQEREAGKTFDVCFQQLKAY 180 (241)
Q Consensus 111 ~mLkd~G~~~v-iIGHSERR~~f~Etd~--------~I~~Kv~~Al~~GL~pI-lCIGEtleere~g~t~~vl~~QL~~~ 180 (241)
+.+++.|++.+ +.-|+==-.-+...|+ .+.+-++.|.+.|...| ++.|............+.+.+.|+.+
T Consensus 54 ~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l 133 (281)
T PRK01060 54 AACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEA 133 (281)
T ss_pred HHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHH
Confidence 46778888732 2235411001122222 45556677788888754 44553211100001233344444444
Q ss_pred HhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHH
Q 026249 181 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAAL 218 (241)
Q Consensus 181 l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~I 218 (241)
++ ....+.|+.||.|.-++....+++++.++.+.+
T Consensus 134 ~~---~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~~~v 168 (281)
T PRK01060 134 LD---KTQGVTIVLENTAGQGSELGRRFEELARIIDGV 168 (281)
T ss_pred Hh---cCCCCEEEEecCCCCCCcccCCHHHHHHHHHhc
Confidence 32 223588999999866654556787776665444
No 31
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=69.22 E-value=69 Score=26.99 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=66.5
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEE---EEeCCcHHHHHcCChHHHHHHHHHH
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI---ACIGEQLQEREAGKTFDVCFQQLKA 179 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI---lCIGEtleere~g~t~~vl~~QL~~ 179 (241)
.|.|.|....||+.|+++|||-=+|-..+ .|.....-++.|.++||..= +.-++.. -..|.+.
T Consensus 7 ~~q~~id~~~~k~~gi~fviiKateG~~y---~D~~~~~~~~~a~~aGl~~G~Yhy~~~~~~-----------a~~qA~~ 72 (184)
T cd06525 7 NWQGNINFNAVKDSGVEVVYIKATEGTTF---VDSYFNENYNGAKAAGLKVGFYHFLVGTSN-----------PEEQAEN 72 (184)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEecCCCcc---cCHhHHHHHHHHHHCCCceEEEEEeeCCCC-----------HHHHHHH
Confidence 57889999999999999999999887544 36678999999999999642 1111111 1245555
Q ss_pred HHhcCC---CCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 026249 180 YADAIP---SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQ 228 (241)
Q Consensus 180 ~l~~i~---~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~ 228 (241)
.++.+. ..-++++-+|.. ++. +.....+.+...-+.+.+.+|.
T Consensus 73 f~~~~~~~~~~~~~~lD~E~~----~~~--~~~~~~~~~~~f~~~v~~~~G~ 118 (184)
T cd06525 73 FYNTIKGKKMDLKPALDVEVN----FGL--SKDELNDYVLRFIEEFEKLSGL 118 (184)
T ss_pred HHHhccccCCCCCeEEEEecC----CCC--CHHHHHHHHHHHHHHHHHHHCC
Confidence 555443 223678889973 122 3444433333333444444454
No 32
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=69.03 E-value=7.2 Score=32.24 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=20.8
Q ss_pred EEeecCcccccCCCC--CCHHHHHHHHHHHHHHH
Q 026249 191 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWL 222 (241)
Q Consensus 191 vIAYEPvWAIGTG~~--Aspe~iqe~~~~IR~~l 222 (241)
.||+ | +||||.- +..+-++-+.+.||++|
T Consensus 110 SIAf-P--ai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 110 SIAL-C--VISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 4677 8 8999884 44555577788888764
No 33
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=66.18 E-value=6.8 Score=35.63 Aligned_cols=55 Identities=27% Similarity=0.260 Sum_probs=43.1
Q ss_pred cCCccccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcH
Q 026249 99 GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 161 (241)
Q Consensus 99 ~~~GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtl 161 (241)
...|+|+.|.--.++++.|+++++.=-| |++ --...|+.+|++.|+.+|+ |.-+.
T Consensus 179 a~~gPfs~e~n~al~~~~~i~~lVtK~S------G~~-Gg~~eKi~AA~~lgi~viv-I~RP~ 233 (256)
T TIGR00715 179 AMRGPFSEELEKALLREYRIDAVVTKAS------GEQ-GGELEKVKAAEALGINVIR-IARPQ 233 (256)
T ss_pred EEeCCCCHHHHHHHHHHcCCCEEEEcCC------CCc-cchHHHHHHHHHcCCcEEE-EeCCC
Confidence 3569999999999999999999997544 221 0256899999999999887 55543
No 34
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=62.64 E-value=27 Score=30.48 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=25.3
Q ss_pred EEeecCcccccCCCC--CCHHHHHHHHHHHHHHHHhhcC
Q 026249 191 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKNMSQ 227 (241)
Q Consensus 191 vIAYEPvWAIGTG~~--Aspe~iqe~~~~IR~~l~~~~~ 227 (241)
-||+ | +||||.- +..+-++-+.+.|++++.+...
T Consensus 130 SIAf-P--aIstG~~g~P~~~aA~i~~~~i~~~l~~~~~ 165 (186)
T cd02904 130 SIAF-P--SLPSGRNGFPKQTAAQLILKAISSYFVSTMS 165 (186)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4677 8 9999984 5455567788899999987533
No 35
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.20 E-value=94 Score=27.24 Aligned_cols=107 Identities=7% Similarity=-0.041 Sum_probs=49.7
Q ss_pred HHHHHhcCCCEEEec--cccc-ccccCC-------ChHHHHHHHHHHHHCCCcEEEEe-CCcHHHHHcCChHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLG--HSER-RHVIGE-------DDQFIGKKAAYALSEGLGVIACI-GEQLQEREAGKTFDVCFQQLK 178 (241)
Q Consensus 110 a~mLkd~G~~~viIG--HSER-R~~f~E-------td~~I~~Kv~~Al~~GL~pIlCI-GEtleere~g~t~~vl~~QL~ 178 (241)
.+.+++.|.+.+-++ |.-. ..++.- .-+.+.+-+..|...|...|+.. |-...........+.+.+-|+
T Consensus 53 ~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (275)
T PRK09856 53 KALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLS 132 (275)
T ss_pred HHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHH
Confidence 456779999866543 2110 011111 12356666788999999886542 211000000011122222233
Q ss_pred HHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHH
Q 026249 179 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAA 217 (241)
Q Consensus 179 ~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~ 217 (241)
.+.+. ..-..+.||+||..--......+++++.++++.
T Consensus 133 ~l~~~-a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~ 170 (275)
T PRK09856 133 ELCEY-AENIGMDLILEPLTPYESNVVCNANDVLHALAL 170 (275)
T ss_pred HHHHH-HHHcCCEEEEecCCCCcccccCCHHHHHHHHHH
Confidence 22221 123578999999631111223456665554443
No 36
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=61.70 E-value=1e+02 Score=26.20 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=67.0
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEE----EEeCCcHHHHHcCChHHHHHHHHH
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI----ACIGEQLQEREAGKTFDVCFQQLK 178 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI----lCIGEtleere~g~t~~vl~~QL~ 178 (241)
.|.|.|....||+.|+++|||==.|.-.+ .|.....-++.|.++||..= .|...+. .+|.+
T Consensus 10 ~~q~~id~~~vk~~gi~fviiKateG~~~---~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~~~------------~~qA~ 74 (191)
T cd06413 10 HHQGDIDWARVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLPRGAYHFFTFCRSG------------AEQAA 74 (191)
T ss_pred CCCCCcCHHHHHhCCCcEEEEEEcCCCCc---cCHHHHHHHHHHHHcCCceEEEEEEecCCCH------------HHHHH
Confidence 47789999999999999999988876544 56678888999999999631 2322111 13344
Q ss_pred HHHhcCC---CCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCc
Q 026249 179 AYADAIP---SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQT 229 (241)
Q Consensus 179 ~~l~~i~---~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~ 229 (241)
..++.+. ..-++++-+|-. -+.....+..++.+......+.+.+..|..
T Consensus 75 ~f~~~~~~~~~~~~~~lD~E~~--~~~~~~~~~~~~~~~~~~f~~~v~~~~G~~ 126 (191)
T cd06413 75 NFIRNVPKDPGALPPVVDVEWN--GNSATCPSAEEVLAELQVFLDALEAHYGKR 126 (191)
T ss_pred HHHHhcCCCCCcCCeEEEEEec--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 4444443 223567888852 111112456665444444445555555543
No 37
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=61.65 E-value=18 Score=33.40 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=62.7
Q ss_pred CcceEE--eecccccCHHHHHHHHHHHhhcc---cC-CCc-----------------ceeEe-------ee-eeccccCC
Q 026249 53 NKFFVG--GNWKCNGTKESITKLVSDLNDAK---LE-ADV-----------------DRIEI-------AA-QNSWVGKG 101 (241)
Q Consensus 53 rk~~I~--gNWKmn~t~~~~~~~~~~l~~~~---~~-~~v-----------------~~i~i-------gA-Qnv~~~~~ 101 (241)
|.++.. -||..-.+.+++.+.+..+.... .+ .++ +.... +. +.--..-.
T Consensus 101 RP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~ 180 (257)
T COG2099 101 RPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMR 180 (257)
T ss_pred CCccccCCCceEEecCHHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEec
Confidence 444444 89999999999888887663211 01 000 10000 10 11112356
Q ss_pred ccccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEE
Q 026249 102 GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIA 155 (241)
Q Consensus 102 GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIl 155 (241)
|+||=|--..+|.+.+|+++|.=-|= ++- --..|+.+|.+.|+.+|+
T Consensus 181 GPfs~~~n~all~q~~id~vItK~SG------~~G-g~~~Ki~aA~eLgi~VI~ 227 (257)
T COG2099 181 GPFSEEDNKALLEQYRIDVVVTKNSG------GAG-GTYEKIEAARELGIPVIM 227 (257)
T ss_pred CCcChHHHHHHHHHhCCCEEEEccCC------ccc-CcHHHHHHHHHcCCcEEE
Confidence 99999999999999999999986663 320 134799999999998886
No 38
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=60.73 E-value=89 Score=27.80 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEE-EeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIA-CIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD 188 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIl-CIGEtleere~g~t~~vl~~QL~~~l~~i~~~~ 188 (241)
.+.++++|++++++--- .+ +.+..=++.+.++|+.+++ |--.|.++| +...++.... .
T Consensus 97 i~~~~~aG~~giiipDl----~~----ee~~~~~~~~~~~g~~~i~~i~P~T~~~~--------i~~i~~~~~~---~-- 155 (242)
T cd04724 97 LRDAKEAGVDGLIIPDL----PP----EEAEEFREAAKEYGLDLIFLVAPTTPDER--------IKKIAELASG---F-- 155 (242)
T ss_pred HHHHHHCCCcEEEECCC----CH----HHHHHHHHHHHHcCCcEEEEeCCCCCHHH--------HHHHHhhCCC---C--
Confidence 67899999999998411 11 2466777888999999887 555554444 2222221111 1
Q ss_pred ceEEeecCcccccCCCCCCHHHHHHHHHHHHHH
Q 026249 189 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 189 ~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
=.+++.+|+--..++ -++.+.+.++.+|+.
T Consensus 156 vy~~s~~g~tG~~~~---~~~~~~~~i~~lr~~ 185 (242)
T cd04724 156 IYYVSRTGVTGARTE---LPDDLKELIKRIRKY 185 (242)
T ss_pred EEEEeCCCCCCCccC---CChhHHHHHHHHHhc
Confidence 134577785432222 244566677777764
No 39
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=60.10 E-value=48 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcC
Q 026249 205 VATPEQAQEVHAALRDWLKNMSQ 227 (241)
Q Consensus 205 ~Aspe~iqe~~~~IR~~l~~~~~ 227 (241)
.+|.|++++.|+.-=+.|.++|.
T Consensus 258 ~Pt~e~Vd~~H~~Y~~~L~~LFd 280 (297)
T PF03982_consen 258 NPTQEDVDKLHARYIEALRELFD 280 (297)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999988888887764
No 40
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=59.10 E-value=49 Score=29.05 Aligned_cols=87 Identities=13% Similarity=-0.021 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEeCCcHHHHH--cCCh---HHHHHHHHHHHHhcCCCCCceEEeecCcccccCCC-CCCH
Q 026249 135 DDQFIGKKAAYALSEGLGVIACIGEQLQERE--AGKT---FDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGK-VATP 208 (241)
Q Consensus 135 td~~I~~Kv~~Al~~GL~pIlCIGEtleere--~g~t---~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~-~Asp 208 (241)
+.+...+.++.+.+.|+++++|||-...... .-.+ .+...++|...+..- .++=+-|-||+.-.-+.|. +.+.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y-glDGiDiD~E~~~~~~~~~~~~~~ 127 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY-GLDGVDFDDEYSGYGKNGTSQPSN 127 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCceEEeeeecccCCCCCCcchH
Confidence 3455667778888899999999995421100 0011 222233333333211 4666888999865422222 2344
Q ss_pred HHHHHHHHHHHHHH
Q 026249 209 EQAQEVHAALRDWL 222 (241)
Q Consensus 209 e~iqe~~~~IR~~l 222 (241)
+.....++.+|+.+
T Consensus 128 ~~~~~lv~~Lr~~~ 141 (255)
T cd06542 128 EAFVRLIKELRKYM 141 (255)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444555555544
No 41
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=58.77 E-value=40 Score=29.62 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=15.5
Q ss_pred ceEEeecCcccccCCCCCCHHHHHHHHHHH
Q 026249 189 NVVIAYEPVWAIGTGKVATPEQAQEVHAAL 218 (241)
Q Consensus 189 ~ivIAYEPvWAIGTG~~Aspe~iqe~~~~I 218 (241)
.+.|+.|+.+-.++-...+++++.++.+.+
T Consensus 133 gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v 162 (273)
T smart00518 133 GVVILLETTAGKGSQIGSTFEDLKEIIDLI 162 (273)
T ss_pred CcEEEEeccCCCCCccCCCHHHHHHHHHhc
Confidence 456666665544333334555555555444
No 42
>PRK08508 biotin synthase; Provisional
Probab=58.08 E-value=1.5e+02 Score=26.96 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=63.6
Q ss_pred cccccHHHHH---hcCCCEEEecccccccccCC-----ChHHHHHHHHHHHHCCCcE----EEEeCCcHHHHHcCChHHH
Q 026249 105 TGEISVEQLK---DIGCKWVVLGHSERRHVIGE-----DDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDV 172 (241)
Q Consensus 105 TGEVSa~mLk---d~G~~~viIGHSERR~~f~E-----td~~I~~Kv~~Al~~GL~p----IlCIGEtleere~g~t~~v 172 (241)
.|..+.+.|+ ++|++.+-+|.==++.+|.. +-+.+-+-++.|.+.|+.+ |+=+||+.|++.
T Consensus 97 ~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~------- 169 (279)
T PRK08508 97 NGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRI------- 169 (279)
T ss_pred CCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHH-------
Confidence 4666776655 55998888775445544433 3345556667799999977 777899988873
Q ss_pred HHHHHHHHHhcCCCCCceEEee---cCcccccCCCCCCHHHHHHHHHHHHHHHH
Q 026249 173 CFQQLKAYADAIPSWDNVVIAY---EPVWAIGTGKVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 173 l~~QL~~~l~~i~~~~~ivIAY---EPvWAIGTG~~Aspe~iqe~~~~IR~~l~ 223 (241)
++-..|..+.. +-+-+-+ -|-+-.+ ..+++++++..+++..|-.+.
T Consensus 170 ---~~l~~lr~L~~-~svpl~~~~p~~~t~~~-~~~~~~~~~lr~iAv~Rl~lp 218 (279)
T PRK08508 170 ---SFLKSLASLSP-HSTPINFFIPNPALPLK-APTLSADEALEIVRLAKEALP 218 (279)
T ss_pred ---HHHHHHHcCCC-CEEeeCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCC
Confidence 11112232321 1122222 2222222 235789999999998887764
No 43
>PRK06934 flavodoxin; Provisional
Probab=57.80 E-value=7.5 Score=34.89 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCCcH-----------HHHHcCChHHHHHHHHHHHHhcCCCCCceEEeecCccc
Q 026249 137 QFIGKKAAYALSEGLGVIACIGEQL-----------QEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWA 199 (241)
Q Consensus 137 ~~I~~Kv~~Al~~GL~pIlCIGEtl-----------eere~g~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWA 199 (241)
+.|++.++..+...|--|-...... .+++.+.. -.|...+..+++.+.|+|.| |+|.
T Consensus 74 k~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~-----P~L~~~~~dl~~YD~I~IG~-PIWw 141 (221)
T PRK06934 74 QYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGR-----PEMREKIQNLADYDQIFIGY-PIWW 141 (221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCCC-----HHHHHHHHhHHhCCEEEEEc-chhh
Confidence 3488888888888887776554221 12222212 22333344455788999999 9995
No 44
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=57.43 E-value=1.9e+02 Score=28.10 Aligned_cols=138 Identities=21% Similarity=0.314 Sum_probs=94.8
Q ss_pred ceEEeecccccCHHHHHHHHHHHhhccc--C--CCc----------------------ceeEeeeeeccccCCccccccc
Q 026249 55 FFVGGNWKCNGTKESITKLVSDLNDAKL--E--ADV----------------------DRIEIAAQNSWVGKGGAFTGEI 108 (241)
Q Consensus 55 ~~I~gNWKmn~t~~~~~~~~~~l~~~~~--~--~~v----------------------~~i~igAQnv~~~~~GA~TGEV 108 (241)
-+++|-=..-.+.+....+++.+.+... . .++ ..|.+|-|..+.
T Consensus 91 i~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~---------- 160 (416)
T COG0635 91 IYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFND---------- 160 (416)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCH----------
Confidence 3566666666777888888887765331 1 111 567888887763
Q ss_pred cHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEE---eCCcHHHHHcCChHHHHHHHHHHHHhc-C
Q 026249 109 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIAC---IGEQLQEREAGKTFDVCFQQLKAYADA-I 184 (241)
Q Consensus 109 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlC---IGEtleere~g~t~~vl~~QL~~~l~~-i 184 (241)
++||-+| |.+ +.+.+...+..+.+.|+..|=| .|-+ ++|.+.+.+-|+.+++- .
T Consensus 161 --~~lk~lg----------R~h----~~~~~~~a~~~~~~~g~~~in~DLIyglP------~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 161 --EVLKALG----------RIH----DEEEAKEAVELARKAGFTSINIDLIYGLP------GQTLESLKEDLEQALELGP 218 (416)
T ss_pred --HHHHHhc----------CCC----CHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCHHHHHHHHHHHHhCCC
Confidence 4777776 443 3355888999999999887744 4544 67888888888888752 1
Q ss_pred CCCCceEEeecCcccccC----CC-CCCHHHHHHHHHHHHHHHHh
Q 026249 185 PSWDNVVIAYEPVWAIGT----GK-VATPEQAQEVHAALRDWLKN 224 (241)
Q Consensus 185 ~~~~~ivIAYEPvWAIGT----G~-~Aspe~iqe~~~~IR~~l~~ 224 (241)
+..+---++.||-+...- |+ .+++++..++++.+.+.|.+
T Consensus 219 dhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~ 263 (416)
T COG0635 219 DHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEK 263 (416)
T ss_pred CEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHH
Confidence 223334468899887653 33 58888889999999999876
No 45
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=56.67 E-value=1.4e+02 Score=27.14 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=23.1
Q ss_pred HHHHHHHCCCcEEE---EeCCcHHHHHcCChHHHHHHHHHHHHh
Q 026249 142 KAAYALSEGLGVIA---CIGEQLQEREAGKTFDVCFQQLKAYAD 182 (241)
Q Consensus 142 Kv~~Al~~GL~pIl---CIGEtleere~g~t~~vl~~QL~~~l~ 182 (241)
=+++|++.|+..|- -+-|..-++.-+.+.+...+++...+.
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~ 121 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAE 121 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46778888865432 223333366667776555555554443
No 46
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=56.59 E-value=1.2e+02 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=39.6
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcE
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~p 153 (241)
.|+|.|-...||..|+++|+|==.|-..+ .|.....-++.|.++||..
T Consensus 8 ~~q~~i~w~~vk~~g~~fv~ikateg~~~---~D~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 8 QPTSVSTFQCLKNNGYSFAIIRAYRSNGS---FDPNSVTNIKNARAAGLST 55 (196)
T ss_pred cccChhhhhHHHhCCceEEEEEEEccCCc---cChHHHHHHHHHHHcCCcc
Confidence 46789999999999999999965554322 5788899999999999875
No 47
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=56.43 E-value=12 Score=33.91 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=62.5
Q ss_pred eecccccCHHHHHHHHHHHh-hcc---cC--------------CCc-------ceeEeeeeecc-ccCCccccccccHHH
Q 026249 59 GNWKCNGTKESITKLVSDLN-DAK---LE--------------ADV-------DRIEIAAQNSW-VGKGGAFTGEISVEQ 112 (241)
Q Consensus 59 gNWKmn~t~~~~~~~~~~l~-~~~---~~--------------~~v-------~~i~igAQnv~-~~~~GA~TGEVSa~m 112 (241)
-||..-.+.+++.+++..+. ... .+ ..+ .....|=+.-+ ..-.|+|+=|.--.|
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al 189 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRAL 189 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHH
Confidence 47888888888888886654 110 00 000 11233322222 245699999999999
Q ss_pred HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCc
Q 026249 113 LKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 160 (241)
Q Consensus 113 Lkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEt 160 (241)
+++.|+++++.=-|=. + -...|+.+|++.|+.+|+ |.-+
T Consensus 190 ~~~~~i~~lVtK~SG~------~--g~~eKi~AA~~lgi~viv-I~RP 228 (249)
T PF02571_consen 190 FRQYGIDVLVTKESGG------S--GFDEKIEAARELGIPVIV-IKRP 228 (249)
T ss_pred HHHcCCCEEEEcCCCc------h--hhHHHHHHHHHcCCeEEE-EeCC
Confidence 9999999999755532 2 356899999999998887 5544
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=54.53 E-value=30 Score=25.77 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=33.3
Q ss_pred cccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHH
Q 026249 105 TGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 162 (241)
Q Consensus 105 TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtle 162 (241)
.|..-+++|++.||+.+|+|+ +++ .=.....+.|+.++...+++.+
T Consensus 51 ~~~~~~~~l~~~~v~~vi~~~------iG~------~~~~~l~~~gI~v~~~~~~~i~ 96 (103)
T cd00851 51 AGGKAAEFLADEGVDVVIVGG------IGP------RALNKLRNAGIKVYKGAEGTVE 96 (103)
T ss_pred CchHHHHHHHHcCCCEEEeCC------CCc------CHHHHHHHCCCEEEEcCCCCHH
Confidence 367889999999999999986 333 2233445569999987765543
No 49
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=53.77 E-value=11 Score=32.88 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=62.2
Q ss_pred CcceEEeecccccCHHHHHHHHHHHhhccc----CCC-cceeEeeeeeccccCCccccccccHH------HHHhcCCCEE
Q 026249 53 NKFFVGGNWKCNGTKESITKLVSDLNDAKL----EAD-VDRIEIAAQNSWVGKGGAFTGEISVE------QLKDIGCKWV 121 (241)
Q Consensus 53 rk~~I~gNWKmn~t~~~~~~~~~~l~~~~~----~~~-v~~i~igAQnv~~~~~GA~TGEVSa~------mLkd~G~~~v 121 (241)
.-++..++||.+...+...++++.+..... +.. |......|++- .|-.-|.|+-. .|...|==.-
T Consensus 28 ~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~----d~~ivG~i~lRh~Ln~~ll~~gGHIGY 103 (174)
T COG3981 28 GSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDE----DGQIVGFINLRHQLNDFLLEEGGHIGY 103 (174)
T ss_pred CCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEec----CCcEEEEEEeeeecchHHHhcCCcccc
Confidence 446778899999766666777777544322 111 32223333322 35555555432 2222110011
Q ss_pred EecccccccccCCChHHHHHHHHHHHHCCCcEEE--EeCCcHHHH
Q 026249 122 VLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIA--CIGEQLQER 164 (241)
Q Consensus 122 iIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIl--CIGEtleer 164 (241)
=|=-||||+-++. +++..-+..|.+.||++|+ |=.++...|
T Consensus 104 ~VrPseR~KGYA~--emLkl~L~~ar~lgi~~Vlvtcd~dN~ASr 146 (174)
T COG3981 104 SVRPSERRKGYAK--EMLKLALEKARELGIKKVLVTCDKDNIASR 146 (174)
T ss_pred eeChhhhccCHHH--HHHHHHHHHHHHcCCCeEEEEeCCCCchhh
Confidence 1223999998876 7899999999999999975 555665554
No 50
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=53.51 E-value=28 Score=29.58 Aligned_cols=109 Identities=19% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHHhcCCCEEEecccccc-cccCC-----------ChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHH------H
Q 026249 111 EQLKDIGCKWVVLGHSERR-HVIGE-----------DDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFD------V 172 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR-~~f~E-----------td~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~------v 172 (241)
.++|++|+++||+.=+==+ ..+.- .+..|..-+..|-+.||++.+=++-...=-+++.... -
T Consensus 27 ~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~ 106 (166)
T PF14488_consen 27 RAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ 106 (166)
T ss_pred HHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH
Confidence 5788888888887522111 11222 3358999999999999999987774422111222111 1
Q ss_pred HHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 026249 173 CFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQ 227 (241)
Q Consensus 173 l~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~ 227 (241)
+.++|...-..-..+.=-+|-||+-=. +..+.+..+.++++++...+
T Consensus 107 v~~el~~~yg~h~sf~GWYip~E~~~~--------~~~~~~~~~~l~~~lk~~s~ 153 (166)
T PF14488_consen 107 VADELWQRYGHHPSFYGWYIPYEIDDY--------NWNAPERFALLGKYLKQISP 153 (166)
T ss_pred HHHHHHHHHcCCCCCceEEEecccCCc--------ccchHHHHHHHHHHHHHhCC
Confidence 222222211121246668899998321 12233444555555555433
No 51
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=52.91 E-value=95 Score=29.82 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=70.7
Q ss_pred eEeeeeecccc---CCccccccccHHHHHhcCCCEEEe--ccccccc-------cc-CCChHHHHHHHHHHHHCCCcEEE
Q 026249 89 IEIAAQNSWVG---KGGAFTGEISVEQLKDIGCKWVVL--GHSERRH-------VI-GEDDQFIGKKAAYALSEGLGVIA 155 (241)
Q Consensus 89 i~igAQnv~~~---~~GA~TGEVSa~mLkd~G~~~viI--GHSERR~-------~f-~Etd~~I~~Kv~~Al~~GL~pIl 155 (241)
+.+|..++... ..|-++.+-....+|+.|.++|=| |+..-+. +. .+....+.+.|..|.+.||.+++
T Consensus 55 ~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~i 134 (407)
T COG2730 55 LNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLI 134 (407)
T ss_pred eecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEE
Confidence 34454444333 334457788888888888887732 2222122 22 22333677779999999999887
Q ss_pred E--------eCCcHHHHHcCChH-----H---HHHHHHHHHHhcCCCCCceE---EeecCcccccCCCCCCHHHHHHHHH
Q 026249 156 C--------IGEQLQEREAGKTF-----D---VCFQQLKAYADAIPSWDNVV---IAYEPVWAIGTGKVATPEQAQEVHA 216 (241)
Q Consensus 156 C--------IGEtleere~g~t~-----~---vl~~QL~~~l~~i~~~~~iv---IAYEPvWAIGTG~~Aspe~iqe~~~ 216 (241)
= .+.........-.. + -+..||..-. ...+.++ ++.||.+ |++....+-.. .+++.
T Consensus 135 D~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f---~~~~~VIg~~~~NEP~~-~~~~~~w~~~~-~~A~~ 209 (407)
T COG2730 135 DLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRF---KNYDTVIGFELINEPNG-IVTSETWNGGD-DEAYD 209 (407)
T ss_pred EecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhc---cCCCceeeeeeecCCcc-cCCccccccch-HHHHH
Confidence 4 33332221111111 1 1223332222 2333443 5999999 77766544444 67777
Q ss_pred HHHHHHHh
Q 026249 217 ALRDWLKN 224 (241)
Q Consensus 217 ~IR~~l~~ 224 (241)
.||+.+..
T Consensus 210 ~v~~~i~~ 217 (407)
T COG2730 210 VVRNAILS 217 (407)
T ss_pred HHHhhhhh
Confidence 88755544
No 52
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=52.70 E-value=46 Score=30.32 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcC-----ChHHHHHHHHHHHHhcCCCCCceEEeecCcc-----------
Q 026249 135 DDQFIGKKAAYALSEGLGVIACIGEQLQEREAG-----KTFDVCFQQLKAYADAIPSWDNVVIAYEPVW----------- 198 (241)
Q Consensus 135 td~~I~~Kv~~Al~~GL~pIlCIGEtleere~g-----~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvW----------- 198 (241)
.|.....++..++...|.-+. -+..+.++++ +..+-+.++++..++.+....+.+++|+|.|
T Consensus 121 ldp~~~~~~a~~Ia~~L~~~d--P~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~ 198 (287)
T cd01137 121 MSPKNAIIYVKNIAKALSEAD--PANAETYQKNAAAYKAKLKALDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKE 198 (287)
T ss_pred cCHHHHHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCeE
Confidence 344555666666655554332 2222222221 1123334444445544433345688999988
Q ss_pred --cc--cCCCCCCHHHHHHHHHHHHHH
Q 026249 199 --AI--GTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 199 --AI--GTG~~Aspe~iqe~~~~IR~~ 221 (241)
.+ +.|..++|.++.++.+.||+.
T Consensus 199 ~~~~~~~~~~eps~~~l~~l~~~ik~~ 225 (287)
T cd01137 199 AYLWPINTEEEGTPKQVATLIEQVKKE 225 (287)
T ss_pred eecccCCCCCCCCHHHHHHHHHHHHHh
Confidence 23 468889999999999999874
No 53
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=51.91 E-value=36 Score=27.71 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHCCCcEEEEeCC---cHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHH
Q 026249 136 DQFIGKKAAYALSEGLGVIACIGE---QLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQ 212 (241)
Q Consensus 136 d~~I~~Kv~~Al~~GL~pIlCIGE---tleere~g~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iq 212 (241)
.+.+.+-+..|-..|...|.+-.- ...........+.+.+-|+.+++.. .-..+.|++||..-.......+.+++.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gv~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIA-EEYGVRIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHH-HHHTSEEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhh-hhhcceEEEecccCccccchhhHHHHH
Confidence 445666666777777666665511 1100000012223333333332211 112477888887655544444445555
Q ss_pred HHHHHH
Q 026249 213 EVHAAL 218 (241)
Q Consensus 213 e~~~~I 218 (241)
++++.+
T Consensus 149 ~~l~~~ 154 (213)
T PF01261_consen 149 RLLEEV 154 (213)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 555444
No 54
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=51.88 E-value=34 Score=24.96 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=38.2
Q ss_pred CCccccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHH
Q 026249 100 KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 162 (241)
Q Consensus 100 ~~GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtle 162 (241)
..+...|.-.+..|.+.||+.+|+|+= ++ .=.....+.|+.++.+.+.+.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~i------G~------~~~~~L~~~gI~v~~~~~~~i~ 86 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGI------GE------GAFRALKEAGIKVYQGAGGDIE 86 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCS------CH------HHHHHHHHTTSEEEESTSSBHH
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCC------CH------HHHHHHHHCCCEEEEcCCCCHH
Confidence 334477888899999999999999984 33 2345566789999998666653
No 55
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=50.98 E-value=60 Score=27.03 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCC--CCHHHHHHHHHHHHHHHHh
Q 026249 170 FDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKN 224 (241)
Q Consensus 170 ~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~--Aspe~iqe~~~~IR~~l~~ 224 (241)
.+.|..-++++|....+.+--.||+ | +||||.- +.-+-++-+...+|+++.+
T Consensus 87 ~~~L~~~~~~~L~~a~~~~~~sIa~-P--~igtG~~g~p~~~~a~~~~~ai~~fl~~ 140 (165)
T cd02908 87 AELLASCYRNSLELARENGLRSIAF-P--AISTGVYGYPLDEAARIALKTVREFLEE 140 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-C--ceecCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3444444444543222212224566 8 8888863 4444457778999999976
No 56
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=50.88 E-value=2.2e+02 Score=27.65 Aligned_cols=108 Identities=17% Similarity=0.253 Sum_probs=65.6
Q ss_pred cHHHHHhcCCCEEEec----cccccccc--CCChHHHHHHHHHHHHCCCcEE-EE--eCCcHHHHHcCChHHHHHHHHHH
Q 026249 109 SVEQLKDIGCKWVVLG----HSERRHVI--GEDDQFIGKKAAYALSEGLGVI-AC--IGEQLQEREAGKTFDVCFQQLKA 179 (241)
Q Consensus 109 Sa~mLkd~G~~~viIG----HSERR~~f--~Etd~~I~~Kv~~Al~~GL~pI-lC--IGEtleere~g~t~~vl~~QL~~ 179 (241)
-.+.|+++|++.+-+| +.+-++.+ .-+.+.+.+-++.+.+.|+..| +. +|=+ |+|.+-+.+-|+.
T Consensus 154 ~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP------gqt~e~~~~tl~~ 227 (453)
T PRK13347 154 MLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP------HQTVESFRETLDK 227 (453)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC------CCCHHHHHHHHHH
Confidence 3467889999999999 22221111 1255568888999999998632 22 2422 3455555555555
Q ss_pred HHhcCCCCCceEE-ee--cCcc------cccCCCCCCHHHHHHHHHHHHHHHHhh
Q 026249 180 YADAIPSWDNVVI-AY--EPVW------AIGTGKVATPEQAQEVHAALRDWLKNM 225 (241)
Q Consensus 180 ~l~~i~~~~~ivI-AY--EPvW------AIGTG~~Aspe~iqe~~~~IR~~l~~~ 225 (241)
+++ + ..+.+.+ .| .| | .||....+++++..++...+.+.|.+.
T Consensus 228 ~~~-l-~p~~i~~y~l~~~p-~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~ 279 (453)
T PRK13347 228 VIA-L-SPDRIAVFGYAHVP-SRRKNQRLIDEAALPDAEERLRQARAVADRLLAA 279 (453)
T ss_pred HHh-c-CCCEEEEecccccc-chhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHC
Confidence 442 1 1222222 22 23 3 356666788888889999999988764
No 57
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=50.85 E-value=46 Score=27.91 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=23.5
Q ss_pred EEeecCcccccCCCC--CCHHHHHHHHHHHHHHHHhh
Q 026249 191 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKNM 225 (241)
Q Consensus 191 vIAYEPvWAIGTG~~--Aspe~iqe~~~~IR~~l~~~ 225 (241)
.||+ | +||||.- +..+-++.+.+.+++++.+.
T Consensus 115 SIA~-P--~lgtG~~g~p~~~~a~~~~~~i~~fl~~~ 148 (175)
T cd02907 115 SIAI-P--AISSGIFGFPLERCVETIVEAVKEFLETK 148 (175)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4566 8 8888773 44555678889999998875
No 58
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.78 E-value=40 Score=29.81 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHHHhcCCCEEEe---cccccccccCCC--------hHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHcCChHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVL---GHSERRHVIGED--------DQFIGKKAAYALSEGLGVIACIGEQLQ-EREAGKTFDVCFQQL 177 (241)
Q Consensus 110 a~mLkd~G~~~viI---GHSERR~~f~Et--------d~~I~~Kv~~Al~~GL~pIlCIGEtle-ere~g~t~~vl~~QL 177 (241)
-..|++.|++.+-+ +|.-. .++-. -+.+.+-+..|...|...|.|.|-..- ........+.+.+.|
T Consensus 63 ~~~l~~~gl~i~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l 140 (283)
T PRK13209 63 VNALVETGFRVNSMCLSAHRRF--PLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGL 140 (283)
T ss_pred HHHHHHcCCceeEEeccccccc--CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHH
Confidence 45778899987654 34311 12222 234667789999999998876553210 000011223334444
Q ss_pred HHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHH
Q 026249 178 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAA 217 (241)
Q Consensus 178 ~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~ 217 (241)
+.+.+- ..-..+.|+|||.. .....+++++-++++.
T Consensus 141 ~~l~~~-A~~~GV~i~iE~~~---~~~~~~~~~~~~ll~~ 176 (283)
T PRK13209 141 KESVEL-ASRASVTLAFEIMD---TPFMNSISKALGYAHY 176 (283)
T ss_pred HHHHHH-HHHhCCEEEEeecC---CcccCCHHHHHHHHHH
Confidence 443321 12245899999962 2233466655444433
No 59
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=50.52 E-value=1.7e+02 Score=25.40 Aligned_cols=104 Identities=23% Similarity=0.241 Sum_probs=63.8
Q ss_pred cccHHHHHhcCCCEEEeccccc---------ccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHH
Q 026249 107 EISVEQLKDIGCKWVVLGHSER---------RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQL 177 (241)
Q Consensus 107 EVSa~mLkd~G~~~viIGHSER---------R~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL 177 (241)
+--.+.+++.|++++-+--+=- |. -.+.-+.+..-++.+.+.|+.+.+++-.... ...+.+.+.+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~-~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---~~~~~~~l~~~~ 152 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKS-REEDLENAEEAIEAAKEAGLEVEGSLEDAFG---CKTDPEYVLEVA 152 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEeecC---CCCCHHHHHHHH
Confidence 6678999999988886653211 11 1123345778889999999999998843320 013455555555
Q ss_pred HHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHH
Q 026249 178 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 178 ~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~ 223 (241)
+.+.+ .....|-+-+. +| .++|+++.+.++.+|+.+.
T Consensus 153 ~~~~~----~g~~~i~l~Dt----~G-~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 153 KALEE----AGADEISLKDT----VG-LATPEEVAELVKALREALP 189 (265)
T ss_pred HHHHH----cCCCEEEechh----cC-CcCHHHHHHHHHHHHHhCC
Confidence 54432 11112323232 23 4899999999999987653
No 60
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=48.18 E-value=30 Score=32.01 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
..+++.+||++++.++ |+-|+=||.-+++|.++-+.+.|+++
T Consensus 56 ~~~~v~~Ql~av~~D~-----------~v~avKtGML~~~eiie~va~~l~~~ 97 (263)
T COG0351 56 PPEFVEAQLDAVFSDI-----------PVDAVKTGMLGSAEIIEVVAEKLKKY 97 (263)
T ss_pred CHHHHHHHHHHHhhcC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 6889999999998643 66788899999999999888888774
No 61
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.50 E-value=36 Score=24.77 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 161 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtl 161 (241)
+..|++.|.+..+- .+.+ -+.++++.|...|..-++.||+..
T Consensus 24 a~~Lr~~g~~v~~d-~~~~---------~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 24 YAELQAAGVDVLLD-DRNE---------RPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred HHHHHHCCCEEEEE-CCCC---------CcccchhHHHhcCCCEEEEECCch
Confidence 45566667655442 2211 377899999999999999999875
No 62
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=46.68 E-value=47 Score=30.77 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=23.4
Q ss_pred ccccccHHHH---HhcCCCEEEecccccc-cccCCChHHHHHHHHHHHHC
Q 026249 104 FTGEISVEQL---KDIGCKWVVLGHSERR-HVIGEDDQFIGKKAAYALSE 149 (241)
Q Consensus 104 ~TGEVSa~mL---kd~G~~~viIGHSERR-~~f~Etd~~I~~Kv~~Al~~ 149 (241)
||||.|-..+ +..|++.++.+||.-- -++++ +..|++.-++.
T Consensus 211 ~TGEmSHH~vL~~~~~g~sVilc~HSNtERgfL~d----~~~kl~~~l~~ 256 (272)
T KOG4131|consen 211 ITGEMSHHDVLDAAANGISVILCEHSNTERGFLSD----LCDKLASSLEE 256 (272)
T ss_pred EeccccHHHHHHHHHcCCeEEEecCCCccchhHHH----HHHHHHhhCCc
Confidence 7888876554 3456666777776542 23333 44555544443
No 63
>PRK12616 pyridoxal kinase; Reviewed
Probab=45.85 E-value=36 Score=30.46 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
..+++.+||+.+++++ |+-+|=+|...+.+.++.+.+++++.
T Consensus 58 ~~~~i~~ql~~l~~d~-----------~~~aikiG~l~s~~~i~~i~~~l~~~ 99 (270)
T PRK12616 58 DTDTIRAQLSTIVDGI-----------GVDAMKTGMLPTVDIIELAADTIKEK 99 (270)
T ss_pred CHHHHHHHHHHHHcCC-----------CCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 5778899999888543 66788888888999888888888663
No 64
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=44.90 E-value=61 Score=30.02 Aligned_cols=82 Identities=10% Similarity=0.121 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCC-----hHHHHHHHHHHHHhcCCCCCceEEeecCccc-----------
Q 026249 136 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGK-----TFDVCFQQLKAYADAIPSWDNVVIAYEPVWA----------- 199 (241)
Q Consensus 136 d~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~-----t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWA----------- 199 (241)
|....+++..++...|.-+- -+..+..+++- ..+.+..+++..++.+ -++.+|.|+|.|.
T Consensus 150 dp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~~--~~~~~i~~H~af~Yf~~~ygl~~~ 225 (311)
T PRK09545 150 SPEIARATAVAIHDKLVELM--PQSKAKLDANLKDFEAQLAQTDKQIGNQLAPV--KGKGYFVFHDAYGYFEKHYGLTPL 225 (311)
T ss_pred CHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcEEEECchHHHHHHhCCCcee
Confidence 44556666666655554322 23333232221 1233444455545432 2355788999883
Q ss_pred ----ccCCCCCCHHHHHHHHHHHHHH
Q 026249 200 ----IGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 200 ----IGTG~~Aspe~iqe~~~~IR~~ 221 (241)
+++|..+||.++.++.+.|++.
T Consensus 226 ~~~~~~~~~eps~~~l~~l~~~ik~~ 251 (311)
T PRK09545 226 GHFTVNPEIQPGAQRLHEIRTQLVEQ 251 (311)
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHHc
Confidence 3468889999999999999854
No 65
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.43 E-value=83 Score=27.83 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHH
Q 026249 138 FIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAA 217 (241)
Q Consensus 138 ~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~ 217 (241)
.+.+-++.|.+.|...|++..-...........+.+.+.|+.+.+.. .-..+.|++||.+-..+-..-+++++.++++.
T Consensus 86 ~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a-~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~ 164 (279)
T cd00019 86 RLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKA-ETKGVVIALETMAGQGNEIGSSFEELKEIIDL 164 (279)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHh
Confidence 35566677777777765552222110000112333444444443321 23457777777764443334556665555554
Q ss_pred H
Q 026249 218 L 218 (241)
Q Consensus 218 I 218 (241)
+
T Consensus 165 v 165 (279)
T cd00019 165 I 165 (279)
T ss_pred c
Confidence 4
No 66
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.38 E-value=75 Score=27.28 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=36.5
Q ss_pred cHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcH
Q 026249 109 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQL 161 (241)
Q Consensus 109 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtl 161 (241)
..+.+.++|+++|++|.+-.. .+.+..=++.+...|+.+++++-...
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~------~~~~~~~~~~~~~~g~~~~v~v~~~~ 132 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALD------DEQLKELYELARELGMEVLVEVHDEE 132 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCC------HHHHHHHHHHHHHcCCeEEEEECCHH
Confidence 578899999999999998643 13456666777889999999986443
No 67
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=43.00 E-value=1.9e+02 Score=23.91 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=68.1
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEE----EEeCCcHHHHHcCChHHHHHHHHH
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI----ACIGEQLQEREAGKTFDVCFQQLK 178 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI----lCIGEtleere~g~t~~vl~~QL~ 178 (241)
.|.|.+....||+-|+++|||-=+|--.+ .|.....-+..|.++||..= .|- +.. -..|.+
T Consensus 7 ~~q~~~~~~~~~~~g~~fviik~t~G~~~---~D~~~~~~~~~a~~aGl~~G~Yhy~~~-~~~-----------a~~qa~ 71 (186)
T cd00599 7 SWQGSIDWNAVKAAGIDFVFIKATEGTTY---VDPKFATNRARARAAGLLVGAYHFARP-CAN-----------AEAQAD 71 (186)
T ss_pred CCCCCCCHHHHHhCCCcEEEEEEeCCCCc---cChHHHHHHHHHHHCCCceEEEEEecC-CCC-----------HHHHHH
Confidence 57888999999999999999998887543 56678889999999998541 222 111 234555
Q ss_pred HHHhcCC---CCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 026249 179 AYADAIP---SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQ 227 (241)
Q Consensus 179 ~~l~~i~---~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~ 227 (241)
..++.+. ....+++-+|..-.-+ ++....+.+....+.+.+..|
T Consensus 72 ~fi~~~~~~~~~~~~~lDvE~~~~~~-----~~~~~~~~~~~f~~~~~~~gg 118 (186)
T cd00599 72 NFVNTVPRDPGSLPLVLDVEDTGGGC-----SAAALAAWLNAFLNEVEALTG 118 (186)
T ss_pred HHHHHccCcCCCCCeEEEEecCCCCC-----CHHHHHHHHHHHHHHHHHHHC
Confidence 5555554 3457788888743111 445544444444555555554
No 68
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=42.83 E-value=48 Score=29.17 Aligned_cols=42 Identities=36% Similarity=0.382 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
..+++.+||+.+++++ |+-+|.+|...+++.++.+.+++++.
T Consensus 51 ~~~~~~~q~~~~~~d~-----------~~~aikiG~l~~~~~~~~i~~~~~~~ 92 (254)
T TIGR00097 51 PPDFVEAQLDAVFSDI-----------PVDAAKTGMLASAEIVEAVARKLREY 92 (254)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 4789999999988632 66788889888898888888887653
No 69
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=42.29 E-value=75 Score=31.76 Aligned_cols=83 Identities=6% Similarity=0.019 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCC-----hHHHHHHHHHHHHhcCCCCCceEEeecCcc-------------
Q 026249 137 QFIGKKAAYALSEGLGVIACIGEQLQEREAGK-----TFDVCFQQLKAYADAIPSWDNVVIAYEPVW------------- 198 (241)
Q Consensus 137 ~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~-----t~~vl~~QL~~~l~~i~~~~~ivIAYEPvW------------- 198 (241)
.....++..++...|.-+. -+..+.++++- ..+-+.++++..++.++.-.+.+|+|+|.|
T Consensus 317 P~na~~~a~~Ia~~LselD--P~na~~Y~~Na~ay~~eL~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~ 394 (479)
T TIGR03772 317 VKNAIAYVEVIRDKLIEVD--PRGAQAYRSNASAYIHRLERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAG 394 (479)
T ss_pred HHHHHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEe
Confidence 3455566666655554443 34433333221 234445555556665543346788999988
Q ss_pred --cccCCCCCCHHHHHHHHHHHHHH
Q 026249 199 --AIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 199 --AIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
.+..|..+||.++.++.+.||+.
T Consensus 395 ~~~~~~~~ePS~~~L~~Li~~IK~~ 419 (479)
T TIGR03772 395 FVTPNPAVEPSLADRRRLTRTIENL 419 (479)
T ss_pred eeccCCCCCCCHHHHHHHHHHHHHc
Confidence 24568889999999999999853
No 70
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=41.37 E-value=51 Score=30.76 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=33.5
Q ss_pred HHHHhcCCCEEEe-----cccccccccCCC-hHHHHHHHHHHHHCCCcEEEEeCCc
Q 026249 111 EQLKDIGCKWVVL-----GHSERRHVIGED-DQFIGKKAAYALSEGLGVIACIGEQ 160 (241)
Q Consensus 111 ~mLkd~G~~~viI-----GHSERR~~f~Et-d~~I~~Kv~~Al~~GL~pIlCIGEt 160 (241)
..+|++|++.|.+ -|.+++-.|+-+ +..+.+=++.|.++||.+|+..|--
T Consensus 31 ~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpy 86 (319)
T PF01301_consen 31 QKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPY 86 (319)
T ss_dssp HHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES-
T ss_pred HHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccce
Confidence 5677888877765 566666666544 4468899999999999999998853
No 71
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=41.12 E-value=2.3e+02 Score=27.52 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=61.9
Q ss_pred HHHHHhcCCCEEEecc----ccccccc--CCChHHHHHHHHHHHHCCCcEE-EE--eCCcHHHHHcCChHHHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGH----SERRHVI--GEDDQFIGKKAAYALSEGLGVI-AC--IGEQLQEREAGKTFDVCFQQLKAY 180 (241)
Q Consensus 110 a~mLkd~G~~~viIGH----SERR~~f--~Etd~~I~~Kv~~Al~~GL~pI-lC--IGEtleere~g~t~~vl~~QL~~~ 180 (241)
...|+++||+.+-+|- .|-.+.+ .-+-+.+.+.++.+.+.|+..| +. +|=+ |+|.+-+.+-|+.+
T Consensus 154 l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP------gqt~e~~~~~l~~~ 227 (453)
T PRK09249 154 LDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLP------KQTPESFARTLEKV 227 (453)
T ss_pred HHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC------CCCHHHHHHHHHHH
Confidence 3578899999999992 1111000 1244567788999999999433 22 2322 34444555555554
Q ss_pred HhcCCCCCceEE-ee--cCcc-----cccCCCCCCHHHHHHHHHHHHHHHHhh
Q 026249 181 ADAIPSWDNVVI-AY--EPVW-----AIGTGKVATPEQAQEVHAALRDWLKNM 225 (241)
Q Consensus 181 l~~i~~~~~ivI-AY--EPvW-----AIGTG~~Aspe~iqe~~~~IR~~l~~~ 225 (241)
++ + ..+.+.+ .| .|-+ .|+....+++++..++...+.+.+.+.
T Consensus 228 ~~-l-~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 278 (453)
T PRK09249 228 LE-L-RPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEA 278 (453)
T ss_pred Hh-c-CCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHC
Confidence 42 1 1222222 12 2422 233444578889899999999988764
No 72
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=40.67 E-value=51 Score=31.14 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
..+++.+||+.+++++ |+-+|=+|..++++.++.++++|+++
T Consensus 57 ~~~~i~~Ql~all~D~-----------~i~aIKiGmL~s~e~i~~v~~~l~~~ 98 (321)
T PTZ00493 57 EEKFIVEQLDSIFADV-----------TIDVVKLGVLYSKKIISLVHNYITNM 98 (321)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHHh
Confidence 5788999999998643 77888999999999999999988665
No 73
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=40.65 E-value=2.5e+02 Score=25.89 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=62.1
Q ss_pred cccHHHHHhcCCCEEEec-----cccccc-ccCC--ChHHHHHHHHHHHHCCCcE----EEEeCCcHHHHHcCChHHHHH
Q 026249 107 EISVEQLKDIGCKWVVLG-----HSERRH-VIGE--DDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDVCF 174 (241)
Q Consensus 107 EVSa~mLkd~G~~~viIG-----HSERR~-~f~E--td~~I~~Kv~~Al~~GL~p----IlCIGEtleere~g~t~~vl~ 174 (241)
+=..+.||++|++.+-.+ +.|-|+ ++.. +-+..-+-++.|.+.|+.+ |+=.||+.+++.. ..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~------~l 216 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIE------HL 216 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHH------HH
Confidence 445688999999876532 334344 3333 5666778888999999864 3334688877731 12
Q ss_pred HHHHHHHhcCCCCCc-eEEeecCcccccCC----CCCCHHHHHHHHHHHHHHHHh
Q 026249 175 QQLKAYADAIPSWDN-VVIAYEPVWAIGTG----KVATPEQAQEVHAALRDWLKN 224 (241)
Q Consensus 175 ~QL~~~l~~i~~~~~-ivIAYEPvWAIGTG----~~Aspe~iqe~~~~IR~~l~~ 224 (241)
..|+..-........ +-+-|-|. ||- .++++++.-.+++..|-.+-+
T Consensus 217 ~~l~~l~~~~~~~~~fIP~~f~p~---~tpl~~~~~~~~~e~l~~iA~~Rl~lp~ 268 (340)
T TIGR03699 217 ERIRELQDKTGGFTAFIPWTFQPG---NTELGKKRPATSTEYLKVLAISRIFLDN 268 (340)
T ss_pred HHHHHhchhhCCeeEEEeecccCC---CCcccCCCCCCHHHHHHHHHHHHHcCCC
Confidence 222211000001111 11234452 653 257899999999998887643
No 74
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=40.06 E-value=69 Score=27.01 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=39.8
Q ss_pred cccccccH-HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcE
Q 026249 103 AFTGEISV-EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153 (241)
Q Consensus 103 A~TGEVSa-~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~p 153 (241)
.|.|.|.. ..+++.|+++|||-=+|-..+ .|.....-++.|.++||..
T Consensus 7 ~~qg~id~~~~~~~~g~~fviikateG~~~---~D~~f~~n~~~a~~aGl~v 55 (177)
T cd06523 7 EWQGPINWDYDTLSKQLDLVIIRVQYGSNY---VDLKYKNNIKEFKKRGIPF 55 (177)
T ss_pred ccCCCCCHHHHHHhCCCCEEEEEEeCCCcc---cCHHHHHHHHHHHHcCCCe
Confidence 46788888 467789999999998886543 7888999999999999975
No 75
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=39.39 E-value=3.1e+02 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=17.5
Q ss_pred ccCHHHHHHHHHHHhhcccCCCcceeEee
Q 026249 64 NGTKESITKLVSDLNDAKLEADVDRIEIA 92 (241)
Q Consensus 64 n~t~~~~~~~~~~l~~~~~~~~v~~i~ig 92 (241)
..+.++-.++++.|.+.- |..|++|
T Consensus 22 ~~s~e~k~~ia~~L~~~G----v~~IEvg 46 (287)
T PRK05692 22 FIPTADKIALIDRLSAAG----LSYIEVA 46 (287)
T ss_pred CcCHHHHHHHHHHHHHcC----CCEEEeC
Confidence 456677788888877652 3568888
No 76
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=38.65 E-value=60 Score=23.78 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=31.1
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQ 162 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtle 162 (241)
+..|++.|++..+- ..+..+++|++.|...|..-++.||+...
T Consensus 22 ~~~L~~~gi~v~~d----------~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 22 ANKLRKAGIRVELD----------DSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp HHHHHHTTSEEEEE----------SSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred HHHHHHCCCEEEEE----------CCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 34566666443332 23334999999999999999999998753
No 77
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=38.55 E-value=68 Score=27.36 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=38.5
Q ss_pred cccccc---cHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcE
Q 026249 103 AFTGEI---SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153 (241)
Q Consensus 103 A~TGEV---Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~p 153 (241)
.|.|.| ....+|..|+++|||-=+|=.. -.|.....-++.|.++||.+
T Consensus 8 ~~Qg~i~~~dw~~vk~~Gi~faiikateG~~---~~D~~~~~n~~~A~~aGl~v 58 (192)
T cd06522 8 SNNGIMSVADYNKLKNYGVKAVIVKLTEGTT---YRNPYAASQIANAKAAGLKV 58 (192)
T ss_pred CCCCCccHHHHHHHHHcCCCEEEEEEcCCCC---ccChHHHHHHHHHHHCCCee
Confidence 467888 5778999999999998776533 24677889999999999964
No 78
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=38.55 E-value=80 Score=26.63 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHHHhhcCCcc
Q 026249 177 LKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTL 230 (241)
Q Consensus 177 L~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~~~~~~ 230 (241)
|...+..+ ..++| +-| | +|==+..-++|+.+.++.+.+.+.|. ..|-+|
T Consensus 63 I~~~a~kv-~~~~i-vly-P-yAHLSs~La~P~~A~~iL~~le~~L~-~~g~eV 111 (138)
T PF08915_consen 63 IKWVAKKV-KAKRI-VLY-P-YAHLSSSLASPDVAVEILKKLEERLK-SRGFEV 111 (138)
T ss_dssp HHHHHHHT-T-SEE-EEE-E--GGGSSSB--HHHHHHHHHHHHHHHH-HTT-EE
T ss_pred HHHHHHhc-CCCEE-EEe-C-cccccCCcCChHHHHHHHHHHHHHHH-hCCCeE
Confidence 33334433 34455 457 4 78778888999999999999999993 344444
No 79
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=38.45 E-value=3.1e+02 Score=25.37 Aligned_cols=40 Identities=10% Similarity=0.015 Sum_probs=27.3
Q ss_pred HHHHHHC--CC-----cEEEEeCCcHHHHHcCChHHHHHHHHHHHHh
Q 026249 143 AAYALSE--GL-----GVIACIGEQLQEREAGKTFDVCFQQLKAYAD 182 (241)
Q Consensus 143 v~~Al~~--GL-----~pIlCIGEtleere~g~t~~vl~~QL~~~l~ 182 (241)
+..|++. |. ...+.+-+..-+++-+.+.+...+++...+.
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~ 127 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAK 127 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5667765 44 3345556666677778998888888877664
No 80
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=38.00 E-value=67 Score=27.26 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=40.1
Q ss_pred cccccccHHH----HHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcE
Q 026249 103 AFTGEISVEQ----LKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153 (241)
Q Consensus 103 A~TGEVSa~m----Lkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~p 153 (241)
.|.|.+.... +|+.|+++|||-=+|--.+ .|.....-++.|.++||.+
T Consensus 7 ~~qg~i~~~~~~~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~ 58 (194)
T cd06524 7 HYQGKIDWQKVKAKVKDSPVAFVFIKATEGVDI---VDPDFPTNWEGAKEAGIIR 58 (194)
T ss_pred CcCCCCChhhhhhhhhhcCccEEEEEecCCCCc---cChHHHHHHHHHHHcCCce
Confidence 5788888887 8999999999998886433 4667889999999999964
No 81
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.00 E-value=1.9e+02 Score=26.17 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=37.0
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEE-EEeCCcHHHH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI-ACIGEQLQER 164 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI-lCIGEtleer 164 (241)
.+.++++|++++|+= .+..+....-+..+.++|+.+| +|--.|..+|
T Consensus 108 ~~~~~~aGvdgviip--------Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er 155 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA--------DLPLEESGDLVEAAKKHGVKPIFLVAPNADDER 155 (256)
T ss_pred HHHHHHcCCCEEEEC--------CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH
Confidence 678999999999883 4455667788889999999988 7777675554
No 82
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=37.94 E-value=3.8e+02 Score=25.85 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=62.4
Q ss_pred HHHHHhcCCCEEEecc---------cccccccCCChHHHHHHHHHHHHCCCcEE-E--EeCCcHHHHHcCChHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGH---------SERRHVIGEDDQFIGKKAAYALSEGLGVI-A--CIGEQLQEREAGKTFDVCFQQL 177 (241)
Q Consensus 110 a~mLkd~G~~~viIGH---------SERR~~f~Etd~~I~~Kv~~Al~~GL~pI-l--CIGEtleere~g~t~~vl~~QL 177 (241)
...|+++|++.+-+|= .-.| +.+-+.+.+.++.+.+.|+..| + =+|=+ |+|.+.+.+-|
T Consensus 144 l~~l~~~G~~rvslGvQS~~~~~L~~l~R---~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP------~qt~e~~~~~l 214 (430)
T PRK08208 144 LALLAARGVNRLSIGVQSFHDSELHALHR---PQKRADVHQALEWIRAAGFPILNIDLIYGIP------GQTHASWMESL 214 (430)
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHhCC---CCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHH
Confidence 3567788999999982 1123 2366678899999999999764 2 24533 45666666666
Q ss_pred HHHHhcCCCCCceEE---eecCcccccCCCCCCHHHHHHHHHHHHHHHHhh
Q 026249 178 KAYADAIPSWDNVVI---AYEPVWAIGTGKVATPEQAQEVHAALRDWLKNM 225 (241)
Q Consensus 178 ~~~l~~i~~~~~ivI---AYEPvWAIGTG~~Aspe~iqe~~~~IR~~l~~~ 225 (241)
+.+++ +. ...+.+ -.+|-=.++.-..++.+...++.+.++++|.+.
T Consensus 215 ~~~~~-l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~ 263 (430)
T PRK08208 215 DQALV-YR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEA 263 (430)
T ss_pred HHHHh-CC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHc
Confidence 66553 11 112211 122311122111246677788999999998764
No 83
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=37.47 E-value=56 Score=31.05 Aligned_cols=43 Identities=28% Similarity=0.191 Sum_probs=30.2
Q ss_pred HHHHHhcCCCEEEecccccccccCC-------ChHHHHHHHHHHHHCCCcEEEEeC
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGE-------DDQFIGKKAAYALSEGLGVIACIG 158 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~E-------td~~I~~Kv~~Al~~GL~pIlCIG 158 (241)
-+.||+.|+++| |=+++.+ +-+.+-+..++|.++||+..|+.-
T Consensus 30 ~~ilk~~G~N~v------RlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfH 79 (332)
T PF07745_consen 30 FQILKDHGVNAV------RLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFH 79 (332)
T ss_dssp HHHHHHTT--EE------EEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHhcCCCeE------EEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeec
Confidence 478999999999 4344443 335688899999999999999985
No 84
>PRK06256 biotin synthase; Validated
Probab=37.43 E-value=3.3e+02 Score=24.97 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHhcCCCEEEecc--ccc-c-ccc-CCChHHHHHHHHHHHHCCCcEEEE----eCCcHHHHHcCChHHHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGH--SER-R-HVI-GEDDQFIGKKAAYALSEGLGVIAC----IGEQLQEREAGKTFDVCFQQLKAY 180 (241)
Q Consensus 110 a~mLkd~G~~~viIGH--SER-R-~~f-~Etd~~I~~Kv~~Al~~GL~pIlC----IGEtleere~g~t~~vl~~QL~~~ 180 (241)
...||++|++.+.+|- |++ + .+. +.+-+..-+-++.+.+.|+.+..+ .||+.+++.. +-..
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~----------~~~~ 224 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVE----------HAFF 224 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHH----------HHHH
Confidence 4567799999987752 221 1 111 234556667888999999864221 5788776631 1112
Q ss_pred HhcCCCCCceEE-eecCcccccCC----CCCCHHHHHHHHHHHHHHHH
Q 026249 181 ADAIPSWDNVVI-AYEPVWAIGTG----KVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 181 l~~i~~~~~ivI-AYEPvWAIGTG----~~Aspe~iqe~~~~IR~~l~ 223 (241)
+..+. .+.+.+ -+=|. =||- .+++++++..+++..|-.+-
T Consensus 225 l~~l~-~~~v~i~~l~P~--pGT~l~~~~~~~~~e~l~~ia~~Rl~~p 269 (336)
T PRK06256 225 LKELD-ADSIPINFLNPI--PGTPLENHPELTPLECLKTIAIFRLINP 269 (336)
T ss_pred HHhCC-CCEEeecccccC--CCCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 22221 111111 12221 1432 24788998888888887663
No 85
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=37.32 E-value=2.4 Score=35.53 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCCcHH---HHHcCChHHHHHHH---------HHHHHhcCCCCCceEEeecCcccccCCC
Q 026249 137 QFIGKKAAYALSEGLGVIACIGEQLQ---EREAGKTFDVCFQQ---------LKAYADAIPSWDNVVIAYEPVWAIGTGK 204 (241)
Q Consensus 137 ~~I~~Kv~~Al~~GL~pIlCIGEtle---ere~g~t~~vl~~Q---------L~~~l~~i~~~~~ivIAYEPvWAIGTG~ 204 (241)
+.|++++...+...+..|-....--. .. .........+ |+.....+++.+.|+|.| |+|+ |.
T Consensus 14 ~~vA~~Ia~~~gadi~eI~~~~~Y~~~~~~y--~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~lG~-PvW~---~~ 87 (156)
T PF12682_consen 14 KKVAEKIAEKTGADIFEIEPVKPYPSDDLDY--RKCISRAKREIKDNNERPEIKPQIPDLSDYDTIFLGT-PVWW---GT 87 (156)
T ss_dssp HHHHHHHHHCCT-EEEE-BBSTTSSTGGCSC--CHCCCHHHHHHTTTT----BC---S-GGG-SEEEEEE-EEET---TE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCcchhhH--HHHHHHHHHHHhcccccccccccccCcccCCEEEEec-hHHc---CC
Confidence 34888888877777666654332211 00 0001111111 222222334688899999 9995 55
Q ss_pred CCCH
Q 026249 205 VATP 208 (241)
Q Consensus 205 ~Asp 208 (241)
+|.|
T Consensus 88 ~~~p 91 (156)
T PF12682_consen 88 PPPP 91 (156)
T ss_dssp E-CH
T ss_pred CCHH
Confidence 5554
No 86
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=37.23 E-value=48 Score=27.14 Aligned_cols=30 Identities=27% Similarity=0.224 Sum_probs=22.7
Q ss_pred EEecccccccccCCChHHHHHHHHHHHH-CCCcEEEEeC
Q 026249 121 VVLGHSERRHVIGEDDQFIGKKAAYALS-EGLGVIACIG 158 (241)
Q Consensus 121 viIGHSERR~~f~Etd~~I~~Kv~~Al~-~GL~pIlCIG 158 (241)
|+|||+ | |..++.+++..|+ .|+.|++=--
T Consensus 2 VFIvhg-~-------~~~~~~~v~~~L~~~~~ep~i~~~ 32 (125)
T PF10137_consen 2 VFIVHG-R-------DLAAAEAVERFLEKLGLEPIIWHE 32 (125)
T ss_pred EEEEeC-C-------CHHHHHHHHHHHHhCCCceEEeec
Confidence 789999 3 2357888999998 6999987433
No 87
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=37.12 E-value=57 Score=27.87 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=39.0
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcE
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~p 153 (241)
.|-|.|... +|..|+++|||-=.|...+ .|.....-++.|.++||..
T Consensus 8 ~~qg~i~~~-~~~~g~~fviiKateG~~~---~d~~~~~n~~~A~~aGl~v 54 (196)
T cd06415 8 SYQGTDLTA-YGQAGAKFAIVKISEGTNY---VNPKASAQVSSAIANGKMT 54 (196)
T ss_pred hcCCcccHH-HHhCCCcEEEEEEcCCCcc---CCccHHHHHHHHHHCCCee
Confidence 567888776 9999999999998888654 4557889999999999864
No 88
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=35.77 E-value=2.7e+02 Score=23.52 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeC
Q 026249 111 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 158 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIG 158 (241)
+.++++|++++++ +.+.++....-++.+.+.|+.+++=++
T Consensus 78 ~~~~~~g~d~v~v--------h~~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (220)
T PRK05581 78 PDFAKAGADIITF--------HVEASEHIHRLLQLIKSAGIKAGLVLN 117 (220)
T ss_pred HHHHHcCCCEEEE--------eeccchhHHHHHHHHHHcCCEEEEEEC
Confidence 5667889998644 122223344557778888988877665
No 89
>PRK12412 pyridoxal kinase; Reviewed
Probab=35.53 E-value=71 Score=28.47 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRD 220 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~ 220 (241)
..+.+.+||+.+++++ |+=+|=+|...+++.++.+.+.+++
T Consensus 56 ~~~~i~~q~~~l~~d~-----------~~~~ikiG~l~~~~~v~~i~~~~~~ 96 (268)
T PRK12412 56 PASTLKPQLETTIEGV-----------GVDALKTGMLGSVEIIEMVAETIEK 96 (268)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCCCCHHHHHHHHHHHHh
Confidence 5678888998888643 5667777888888888888877765
No 90
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=35.41 E-value=33 Score=33.97 Aligned_cols=26 Identities=31% Similarity=0.175 Sum_probs=22.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHH
Q 026249 198 WAIGTGKVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 198 WAIGTG~~Aspe~iqe~~~~IR~~l~ 223 (241)
-|||||.-++|+++..+++.|++.-.
T Consensus 231 TAiGTGiNa~~~Y~~~vv~~l~evtg 256 (471)
T COG1027 231 TAIGTGINAPKGYIELVVKKLAEVTG 256 (471)
T ss_pred eeeccCcCCChhHHHHHHHHHHHHhC
Confidence 49999999999999999998887653
No 91
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=35.08 E-value=41 Score=32.24 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=35.4
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHH----HHHHCCCcEEEEeCCcHH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAA----YALSEGLGVIACIGEQLQ 162 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~----~Al~~GL~pIlCIGEtle 162 (241)
..+|+|+|++++=+|-+.| -||.+-+.+-++ .|.++ .+.|+|-|=...
T Consensus 93 E~~Lks~GitV~RigG~nR----~ETa~~v~~~~~~~yp~af~n-~kvvvv~GwDy~ 144 (337)
T COG2247 93 ENALKSLGITVKRIGGANR----YETAEKVAKFFREDYPNAFKN-VKVVVVYGWDYA 144 (337)
T ss_pred HHHHHhCCcEEEEecCcch----HHHHHHHHHHHHhhchhhhcC-eEEEEEeccccH
Confidence 4799999999999999988 566655544443 45554 788999886654
No 92
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.82 E-value=1.2e+02 Score=27.49 Aligned_cols=81 Identities=9% Similarity=0.122 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcC-----ChHHHHHHHHHHHHhcCCCCCceEEeecCcc------------
Q 026249 136 DQFIGKKAAYALSEGLGVIACIGEQLQEREAG-----KTFDVCFQQLKAYADAIPSWDNVVIAYEPVW------------ 198 (241)
Q Consensus 136 d~~I~~Kv~~Al~~GL~pIlCIGEtleere~g-----~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvW------------ 198 (241)
|.....++..++...|.-+. -+..+.++++ +..+.+.++++..++.+ -.+.+|.|.|.|
T Consensus 126 dp~n~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~--~~~~~v~~H~af~Yl~~~~gl~~~ 201 (286)
T cd01019 126 SPENAAEVAQAVAEKLSALD--PDNAATYAANLEAFNARLAELDATIKERLAPV--KTKPFFVFHDAYGYFEKRYGLTQA 201 (286)
T ss_pred CHHHHHHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCeEEEecccHHHHHHHcCCcee
Confidence 44556666666666655433 2233333222 11222333333333322 245678899988
Q ss_pred ---cccCCCCCCHHHHHHHHHHHHH
Q 026249 199 ---AIGTGKVATPEQAQEVHAALRD 220 (241)
Q Consensus 199 ---AIGTG~~Aspe~iqe~~~~IR~ 220 (241)
.+.+|..++|.++.++.+.|++
T Consensus 202 ~~~~~~~~~eps~~~l~~l~~~ik~ 226 (286)
T cd01019 202 GVFTIDPEIDPGAKRLAKIRKEIKE 226 (286)
T ss_pred eeecCCCCCCCCHHHHHHHHHHHHH
Confidence 2446788999999999999985
No 93
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=34.54 E-value=1.2e+02 Score=26.61 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=19.7
Q ss_pred CCceEE-eecCcccccCCCCCCHHHHHHHHHHHH
Q 026249 187 WDNVVI-AYEPVWAIGTGKVATPEQAQEVHAALR 219 (241)
Q Consensus 187 ~~~ivI-AYEPvWAIGTG~~Aspe~iqe~~~~IR 219 (241)
.+++++ -+.+ |..+.|.....+.++...+.+.
T Consensus 281 ~~rVy~~~~~~-~~~~~~~~~~~~~l~~l~~~l~ 313 (319)
T COG0614 281 NGRVYVLPDDV-WLAGPGPSAAILGLEDLAKLLY 313 (319)
T ss_pred cCcEEecCccc-cccCCCchhHHHHHHHHHHHhc
Confidence 356553 3333 9999888776666665555543
No 94
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.42 E-value=3e+02 Score=23.69 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=66.8
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEE---EEeCCcHHHHHcCChHHHHHHHHHH
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI---ACIGEQLQEREAGKTFDVCFQQLKA 179 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI---lCIGEtleere~g~t~~vl~~QL~~ 179 (241)
.|-|.|....+|+-|+++|+|-=+|=..+. |.....-.+.|.++||..= ++-.++. -.+|.+.
T Consensus 15 ~~qg~IDw~~v~~~gi~Fv~iKATEG~~~~---D~~f~~n~~~A~~~Gl~vGaYHf~~~~~~-----------~~~QA~~ 80 (190)
T cd06419 15 QDDGYIDFNSLQSNGISFVYLRATQGASYF---DDNFLSNFSRAQGTGLSVGVIHTFSFSST-----------AAAQYRY 80 (190)
T ss_pred CCCCccCHHHHHhCCCeEEEEEeecCCCcc---ChhHHHHHHHHHHCCCCEEEEEEeecCCC-----------HHHHHHH
Confidence 467999999999999999999888876553 5678889999999999852 1222211 1245555
Q ss_pred HHhcCC-C--CCceEEeecCcccccCCCCCCHHHH-HHHHHHHHHHHHhhcCCc
Q 026249 180 YADAIP-S--WDNVVIAYEPVWAIGTGKVATPEQA-QEVHAALRDWLKNMSQQT 229 (241)
Q Consensus 180 ~l~~i~-~--~~~ivIAYEPvWAIGTG~~Aspe~i-qe~~~~IR~~l~~~~~~~ 229 (241)
.++.+. . .-+++|-.|- . |. ...+++++ ..+.++| +.|.+.+|..
T Consensus 81 F~~~v~~~~~~lp~vlD~E~--~-~~-~~~~~~~~~~~~~~fl-~~ve~~~g~~ 129 (190)
T cd06419 81 FIRKVGNNTGNLPIAIYVSY--Y-GD-YNPDTKKSTQKLGLLV-QLLEQHYNQS 129 (190)
T ss_pred HHHhCCCCCCCCCeEEEEec--C-CC-CCCCHHHHHHHHHHHH-HHHHHHHCCC
Confidence 565554 1 2244555552 1 21 12456555 4444444 4555556644
No 95
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=34.42 E-value=1.4e+02 Score=26.96 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=41.1
Q ss_pred cHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHH
Q 026249 109 SVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQE 163 (241)
Q Consensus 109 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtlee 163 (241)
-....+++|++.+++.-+-.+ ++.+..=+..|.+.|+.+++|+-+..|-
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~------~~~l~~li~~a~~lGl~~lvevh~~~E~ 173 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALD------DEQLKELLDYAHSLGLDVLVEVHDEEEL 173 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCC------HHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 467788999999999988743 3578889999999999999999877643
No 96
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.20 E-value=1.5e+02 Score=26.54 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcC-----ChHHHHHHHHHHHHhcCCCCCceEEeecCcc------------
Q 026249 136 DQFIGKKAAYALSEGLGVIACIGEQLQEREAG-----KTFDVCFQQLKAYADAIPSWDNVVIAYEPVW------------ 198 (241)
Q Consensus 136 d~~I~~Kv~~Al~~GL~pIlCIGEtleere~g-----~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvW------------ 198 (241)
|.....++..++...|.-+. -+..+.++++ +..+-+.++++..++.+. ++.+|+|+|.|
T Consensus 117 dp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~--~~~~v~~H~af~Y~~~~ygl~~~ 192 (266)
T cd01018 117 SPANAKIMAENIYEALAELD--PQNATYYQANLDALLAELDALDSEIRTILSKLK--QRAFMVYHPAWGYFARDYGLTQI 192 (266)
T ss_pred CHHHHHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEECchhHHHHHHcCCEEE
Confidence 55566777777766665443 3333333322 112334444444444332 35678899988
Q ss_pred cc-cCCCCCCHHHHHHHHHHHHHH
Q 026249 199 AI-GTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 199 AI-GTG~~Aspe~iqe~~~~IR~~ 221 (241)
.+ +.|..++|.++.++.+.||+.
T Consensus 193 ~~~~~~~eps~~~l~~l~~~ik~~ 216 (266)
T cd01018 193 PIEEEGKEPSPADLKRLIDLAKEK 216 (266)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHc
Confidence 22 467789999999999999874
No 97
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=32.83 E-value=2.2e+02 Score=26.51 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=59.7
Q ss_pred HHHHHhcCCCEEEecc-----cccccccC---CChHHHHHHHHHHHHCCCcE----EEEeCCcHHHHHcCChHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGH-----SERRHVIG---EDDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDVCFQQL 177 (241)
Q Consensus 110 a~mLkd~G~~~viIGH-----SERR~~f~---Etd~~I~~Kv~~Al~~GL~p----IlCIGEtleere~g~t~~vl~~QL 177 (241)
...|||+|++.+..+. .|-|+.+. -+-+..-+-++.|.+.|+.+ |+=.||+.+++. .+...+ ++|
T Consensus 144 l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~--~~l~~l-r~l 220 (343)
T TIGR03551 144 LKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWV--DHLLIL-REI 220 (343)
T ss_pred HHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHH--HHHHHH-HHh
Confidence 4568999999876332 23333222 25556678899999999975 444578887773 122221 222
Q ss_pred HHHHhcCCCCCc-eEEeecCcccccCCC--------CCCHHHHHHHHHHHHHHHH
Q 026249 178 KAYADAIPSWDN-VVIAYEPVWAIGTGK--------VATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 178 ~~~l~~i~~~~~-ivIAYEPvWAIGTG~--------~Aspe~iqe~~~~IR~~l~ 223 (241)
+.--.+ +.. +-+-|-|. ||.. .+++++.-.+++..|=.+-
T Consensus 221 ~~~~~~---~~~~iP~~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp 269 (343)
T TIGR03551 221 QEETGG---FTEFVPLPFVHY---NAPLYLKGMARPGPTGREDLKVHAIARILLH 269 (343)
T ss_pred hHHhCC---eeEEEeccccCC---CCccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 221111 111 12233343 5532 2589999999998887663
No 98
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=32.24 E-value=4.4e+02 Score=24.87 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=65.9
Q ss_pred HHHHHhcCCCEEEecc----ccccccc--CCChHHHHHHHHHHHHCCCcEEEE---eCCcHHHHHcCChHHHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGH----SERRHVI--GEDDQFIGKKAAYALSEGLGVIAC---IGEQLQEREAGKTFDVCFQQLKAY 180 (241)
Q Consensus 110 a~mLkd~G~~~viIGH----SERR~~f--~Etd~~I~~Kv~~Al~~GL~pIlC---IGEtleere~g~t~~vl~~QL~~~ 180 (241)
.+.|+++|++.+-+|= .+..+.+ +-+-+.+.+.++.+.+.|+..|-+ .|=+ |+|.+.+.+-|+.+
T Consensus 106 l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlP------gqt~~~~~~~l~~~ 179 (370)
T PRK06294 106 IRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLP------TQSLSDFIVDLHQA 179 (370)
T ss_pred HHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHHHHH
Confidence 5677888888888873 1221111 135566888899999999975433 4533 56777777777766
Q ss_pred Hhc-CCCCCceEEeecCc------ccccCCCCCCHHHHHHHHHHHHHHHHhh
Q 026249 181 ADA-IPSWDNVVIAYEPV------WAIGTGKVATPEQAQEVHAALRDWLKNM 225 (241)
Q Consensus 181 l~~-i~~~~~ivIAYEPv------WAIGTG~~Aspe~iqe~~~~IR~~l~~~ 225 (241)
++- ++..+--.+..||- ...|.-..++.+...++...+++.|.+.
T Consensus 180 ~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 231 (370)
T PRK06294 180 ITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQ 231 (370)
T ss_pred HccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 631 11111112234452 1122223467788888999999998763
No 99
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=32.24 E-value=4.8e+02 Score=25.30 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=63.1
Q ss_pred HHHHhcCCCEEEec----cccccccc--CCChHHHHHHHHHHHHCCCcEE-EE--eCCcHHHHHcCChHHHHHHHHHHHH
Q 026249 111 EQLKDIGCKWVVLG----HSERRHVI--GEDDQFIGKKAAYALSEGLGVI-AC--IGEQLQEREAGKTFDVCFQQLKAYA 181 (241)
Q Consensus 111 ~mLkd~G~~~viIG----HSERR~~f--~Etd~~I~~Kv~~Al~~GL~pI-lC--IGEtleere~g~t~~vl~~QL~~~l 181 (241)
..|+++|++.+-|| +.+-.+.+ .-+-+.+.+-++.+.+.|+..| ++ +|=+ |+|.+.+.+-++.++
T Consensus 155 ~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP------gqt~e~~~~tl~~~~ 228 (455)
T TIGR00538 155 DALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLP------KQTKESFAKTLEKVA 228 (455)
T ss_pred HHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCC------CCCHHHHHHHHHHHH
Confidence 67788899999998 21111111 1234567788999999999522 22 2422 445556666666544
Q ss_pred hcCCCCCceEE-ee--cCccc------ccCCCCCCHHHHHHHHHHHHHHHHhh
Q 026249 182 DAIPSWDNVVI-AY--EPVWA------IGTGKVATPEQAQEVHAALRDWLKNM 225 (241)
Q Consensus 182 ~~i~~~~~ivI-AY--EPvWA------IGTG~~Aspe~iqe~~~~IR~~l~~~ 225 (241)
+ + ..+.+.+ .| +| |. +|....+++++..++...+.+.+.+.
T Consensus 229 ~-l-~~~~is~y~L~~~p-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~ 278 (455)
T TIGR00538 229 E-L-NPDRLAVFNYAHVP-WVKPAQRKIPEAALPSAEEKLDILQETIAFLTEA 278 (455)
T ss_pred h-c-CCCEEEEecCcccc-chhHHHhcccccCCCCHHHHHHHHHHHHHHHHHC
Confidence 3 1 1222221 22 45 32 34444678999999999999988763
No 100
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=32.02 E-value=38 Score=31.92 Aligned_cols=27 Identities=41% Similarity=0.776 Sum_probs=22.3
Q ss_pred eecCcccccCCCCCCHHHHHHHHHHHHH
Q 026249 193 AYEPVWAIGTGKVATPEQAQEVHAALRD 220 (241)
Q Consensus 193 AYEPvWAIGTG~~Aspe~iqe~~~~IR~ 220 (241)
||||.|---.- -.+||++-++|.-+|.
T Consensus 265 aYePrWfmK~~-HInPeEav~Ihkdv~a 291 (343)
T KOG3798|consen 265 AYEPRWFMKSQ-HINPEEAVEIHKDVRA 291 (343)
T ss_pred ccCchhhcccc-cCCHHHHHHHHHHHhh
Confidence 99999976443 3689999999998875
No 101
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=31.53 E-value=86 Score=30.03 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEecccccccccCC-----ChHHHHHHHHHHHHCCCcE----EEEeCCcHHHH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGE-----DDQFIGKKAAYALSEGLGV----IACIGEQLQER 164 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~E-----td~~I~~Kv~~Al~~GL~p----IlCIGEtleer 164 (241)
++.|||+|+++.-.++=-.|.+|.. +-+.--.-++.+.++||.+ |+=+||+.++|
T Consensus 147 ~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDr 210 (335)
T COG0502 147 AEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDR 210 (335)
T ss_pred HHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHH
No 102
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=31.30 E-value=3e+02 Score=22.79 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHC--CCcEEEEeCCcHHHHH---cC--ChHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCC
Q 026249 135 DDQFIGKKAAYALSE--GLGVIACIGEQLQERE---AG--KTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVAT 207 (241)
Q Consensus 135 td~~I~~Kv~~Al~~--GL~pIlCIGEtleere---~g--~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~As 207 (241)
..+.....++.+.+. |++++++||....... .. ...+-+.+++...+..- .++-+-|-+|.+-..+. .+
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~-~~DGidiD~E~~~~~~~---~~ 122 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTY-GFDGVDIDWEYPGAADN---SD 122 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHc-CCCceEEeeeCCCCcCc---cH
Confidence 334455677777776 9999999996432111 01 12233344444444321 45667888998654332 23
Q ss_pred HHHHHHHHHHHHHHHH
Q 026249 208 PEQAQEVHAALRDWLK 223 (241)
Q Consensus 208 pe~iqe~~~~IR~~l~ 223 (241)
.+...+.++.+|+.+.
T Consensus 123 ~~~~~~ll~~lr~~l~ 138 (210)
T cd00598 123 RENFITLLRELRSALG 138 (210)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3444445555555543
No 103
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=30.84 E-value=1.6e+02 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCCceEEeecCccc---------------ccCCCCCCHHHHHHHHHHHHH
Q 026249 173 CFQQLKAYADAIPSWDNVVIAYEPVWA---------------IGTGKVATPEQAQEVHAALRD 220 (241)
Q Consensus 173 l~~QL~~~l~~i~~~~~ivIAYEPvWA---------------IGTG~~Aspe~iqe~~~~IR~ 220 (241)
+.++++..++.+.. +.+|+|.|.|. ++.|..+||.++.++.+.|++
T Consensus 137 l~~~~~~~~~~~~~--~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~ 197 (256)
T PF01297_consen 137 LDAEIKEKLAKLPG--RPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKE 197 (256)
T ss_dssp HHHHHHHHHTTSSG--GEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccC--CeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhh
Confidence 33444444443322 67788999873 577889999999999999887
No 104
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.53 E-value=3.2e+02 Score=24.56 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=23.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhhc
Q 026249 199 AIGTGKVATPEQAQEVHAALRDWLKNMS 226 (241)
Q Consensus 199 AIGTG~~Aspe~iqe~~~~IR~~l~~~~ 226 (241)
.||++..+.|..+.++.+.+.+++.+.-
T Consensus 258 ~igra~l~~p~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 258 QVGTANFVDPEAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred EEchhhhcChHHHHHHHHHHHHHHHHcC
Confidence 5667777789999999999999987753
No 105
>PRK04531 acetylglutamate kinase; Provisional
Probab=30.31 E-value=84 Score=30.49 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHH-----------HHHHHHHHCCCcEEE-EeCCcHHHHHcCC----hHHHHH
Q 026249 111 EQLKDIGCKWVVLGHSERRHVIGEDDQFIG-----------KKAAYALSEGLGVIA-CIGEQLQEREAGK----TFDVCF 174 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~-----------~Kv~~Al~~GL~pIl-CIGEtleere~g~----t~~vl~ 174 (241)
++|+..|+.-..++. +|-.-.|+-+.+. ..++.+++.|..||+ |+|++. .|+ ..|.+.
T Consensus 81 ~~l~~~gie~~~v~G--~RVTd~~tl~vv~~~l~~vn~~lv~~I~~~L~~g~IPVlsplg~~~----~G~~~NvnaD~vA 154 (398)
T PRK04531 81 AELDAAGIEKETVNG--LRVTSPEALAIVRKVFQRSNLDLVEAVESSLRAGSIPVIASLGETP----SGQILNINADVAA 154 (398)
T ss_pred HHHHHcCCCcEEECC--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCcEECC----CCcEEEECHHHHH
Confidence 778888877777655 4543333322222 226779999999998 577652 354 466677
Q ss_pred HHHHHHHhcCCCCCceEEee
Q 026249 175 QQLKAYADAIPSWDNVVIAY 194 (241)
Q Consensus 175 ~QL~~~l~~i~~~~~ivIAY 194 (241)
..|...|. ..++++.-
T Consensus 155 ~~LA~aL~----a~KLIflt 170 (398)
T PRK04531 155 NELVSALQ----PYKIIFLT 170 (398)
T ss_pred HHHHHHcC----CCEEEEEE
Confidence 77766663 34566554
No 106
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=30.11 E-value=1.6e+02 Score=26.45 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCCCceEEeecCccc---------------ccCCCCCCHHHHHHHHHHHHHH
Q 026249 171 DVCFQQLKAYADAIPSWDNVVIAYEPVWA---------------IGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 171 ~vl~~QL~~~l~~i~~~~~ivIAYEPvWA---------------IGTG~~Aspe~iqe~~~~IR~~ 221 (241)
+-+.++++..++.+ -.+.+|+|+|.|- +.+|..++|.++.++.+.||+.
T Consensus 156 ~~l~~~~~~~~~~~--~~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 219 (282)
T cd01017 156 EALDQEYRAKLAKA--KGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKS 219 (282)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHc
Confidence 33444455444433 2345778999774 3468889999999999998863
No 107
>PRK09936 hypothetical protein; Provisional
Probab=29.88 E-value=1.2e+02 Score=28.74 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=67.8
Q ss_pred cccHHHHHhcCCCEEEecccccc-cccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHH----H--cCCh-HHHHHHHHH
Q 026249 107 EISVEQLKDIGCKWVVLGHSERR-HVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQER----E--AGKT-FDVCFQQLK 178 (241)
Q Consensus 107 EVSa~mLkd~G~~~viIGHSERR-~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleer----e--~g~t-~~vl~~QL~ 178 (241)
+-.-+.+++.||+.+||==+-== ..|++.+--+.+-+..|.+.||..++ |=..+++ - .|.+ ...+.+|+.
T Consensus 41 q~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~v--GL~~Dp~y~q~~~~d~~~~~~yl~~~l~ 118 (296)
T PRK09936 41 QGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVV--GLYADPEFFMHQKQDGAALESYLNRQLG 118 (296)
T ss_pred HHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEE--cccCChHHHHHHhcCchhHHHHHHHHHH
Confidence 34456789999998887432100 07899999999999999999999986 7655432 1 1122 335666665
Q ss_pred HHHhcCC----C----CCceEEeecC---cccccCCCCCCHHHHHHHHHHHHHHHHhhc
Q 026249 179 AYADAIP----S----WDNVVIAYEP---VWAIGTGKVATPEQAQEVHAALRDWLKNMS 226 (241)
Q Consensus 179 ~~l~~i~----~----~~~ivIAYEP---vWAIGTG~~Aspe~iqe~~~~IR~~l~~~~ 226 (241)
..+..-. . .+--+|-||+ -| .+++.-+.....+++.+....
T Consensus 119 ~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W-------~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 119 ASLQQARLWSAAWGVPVDGWYLPAELDDLNW-------RDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHHHHHHHHhccCCCCCeEEeeeccchhcc-------cCHHHHHHHHHHHHHHHHhCC
Confidence 5553211 1 2336777775 23 345544555556666554433
No 108
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.85 E-value=2.9e+02 Score=24.36 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHhcCCCEEEecccccc-cccCCChH--------HHHHHHHHHHHCCCcEEEEeCCcHHHHH--cCChHHHHHHHHHH
Q 026249 111 EQLKDIGCKWVVLGHSERR-HVIGEDDQ--------FIGKKAAYALSEGLGVIACIGEQLQERE--AGKTFDVCFQQLKA 179 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR-~~f~Etd~--------~I~~Kv~~Al~~GL~pIlCIGEtleere--~g~t~~vl~~QL~~ 179 (241)
.+|++.|++.+-++.+-.+ ..+.-.|+ .+.+-++.|.+.|...|. ++....... .....+.+.+.|+.
T Consensus 59 ~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~-~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (279)
T TIGR00542 59 NAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQ-LAGYDVYYEEHDEETRRRFREGLKE 137 (279)
T ss_pred HHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEE-ecCcccccCcCCHHHHHHHHHHHHH
Confidence 3588889988766554322 22332222 356667888889987664 443210000 01123334444444
Q ss_pred HHhcCCCCCceEEeecCcccccCCCCCCHHHHHHH
Q 026249 180 YADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEV 214 (241)
Q Consensus 180 ~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~ 214 (241)
+.+- ..-..+.|++||. ++.-..+++++.++
T Consensus 138 l~~~-A~~~Gv~l~lE~~---~~~~~~t~~~~~~l 168 (279)
T TIGR00542 138 AVEL-AARAQVTLAVEIM---DTPFMSSISKWLKW 168 (279)
T ss_pred HHHH-HHHcCCEEEEeeC---CCchhcCHHHHHHH
Confidence 3321 1234688999985 22233455544433
No 109
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=29.27 E-value=1.6e+02 Score=23.96 Aligned_cols=63 Identities=8% Similarity=-0.016 Sum_probs=39.2
Q ss_pred CCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcC------ChHHHHHHHHHH
Q 026249 117 GCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAG------KTFDVCFQQLKA 179 (241)
Q Consensus 117 G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g------~t~~vl~~QL~~ 179 (241)
.++.+|+.+.+..-...+-...+.+.++.+.+.|...|+|-|-....++.+ .+..++.+.|+.
T Consensus 7 DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k 75 (126)
T TIGR01689 7 DLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQ 75 (126)
T ss_pred eCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHH
Confidence 456677654311111244445566777777799999999999998766522 244566666644
No 110
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=29.17 E-value=2.5e+02 Score=26.90 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=18.8
Q ss_pred cccccCHHHHHHHHHHHhhcccCCCcceeEee
Q 026249 61 WKCNGTKESITKLVSDLNDAKLEADVDRIEIA 92 (241)
Q Consensus 61 WKmn~t~~~~~~~~~~l~~~~~~~~v~~i~ig 92 (241)
.+...+.++=.++++.|.+.- |..|++|
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~~G----V~~IEvG 88 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVSSG----LPVVEAT 88 (347)
T ss_pred CCCCCCHHHHHHHHHHHHHcC----CCEEEEC
Confidence 455567777788888877653 2457666
No 111
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.11 E-value=3.4e+02 Score=23.68 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=41.0
Q ss_pred HHHHHhcCCCEEEecccc-cccccCC--------ChHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHcCChHHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGHSE-RRHVIGE--------DDQFIGKKAAYALSEGLGVIACIGEQLQ-EREAGKTFDVCFQQLKA 179 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSE-RR~~f~E--------td~~I~~Kv~~Al~~GL~pIlCIGEtle-ere~g~t~~vl~~QL~~ 179 (241)
.++|++.|++.+-++-+- ++..+.- ..+.+.+-+..|...|...|.+-|-..- ........+.+.+.|+.
T Consensus 58 ~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (284)
T PRK13210 58 VKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAW 137 (284)
T ss_pred HHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHH
Confidence 346777887766442211 1111221 2234556677788888877765442110 00000122333344444
Q ss_pred HHhcCCCCCceEEeecCc
Q 026249 180 YADAIPSWDNVVIAYEPV 197 (241)
Q Consensus 180 ~l~~i~~~~~ivIAYEPv 197 (241)
+.+- ..-..+.|+|||.
T Consensus 138 l~~~-a~~~gv~l~lE~~ 154 (284)
T PRK13210 138 AVEQ-AAAAQVMLAVEIM 154 (284)
T ss_pred HHHH-HHHhCCEEEEEec
Confidence 3321 1234678888884
No 112
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=29.11 E-value=1.3e+02 Score=22.16 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=33.3
Q ss_pred ccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeC-CcH
Q 026249 104 FTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG-EQL 161 (241)
Q Consensus 104 ~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIG-Etl 161 (241)
..|..-+..|.+.||+.+|.|+ +++ .=.....+.|++++.-.+ .+.
T Consensus 48 ~~~~~~~~~l~~~~v~~vi~~~------iG~------~a~~~l~~~gI~v~~~~~~~~v 94 (102)
T cd00562 48 GEGKLAARLLALEGCDAVLVGG------IGG------PAAAKLEAAGIKPIKAAEGGTI 94 (102)
T ss_pred ccchHHHHHHHHCCCcEEEEcc------cCc------cHHHHHHHcCCEEEEcCCCCcH
Confidence 4677889999999999999996 444 223445567999986554 443
No 113
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=29.08 E-value=1.5e+02 Score=24.58 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=30.6
Q ss_pred eeEeeeeeccccCC-ccccccccHHHHHhcCCCEEEeccccccccc
Q 026249 88 RIEIAAQNSWVGKG-GAFTGEISVEQLKDIGCKWVVLGHSERRHVI 132 (241)
Q Consensus 88 ~i~igAQnv~~~~~-GA~TGEVSa~mLkd~G~~~viIGHSERR~~f 132 (241)
.|-+.=|.+..... .....+.....+.+.|++|++.||.-+.+..
T Consensus 159 ~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 159 NILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred EEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeee
Confidence 45555555543321 1122467888899999999999999987654
No 114
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=28.42 E-value=2e+02 Score=19.86 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=38.9
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCC-CCCc
Q 026249 111 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP-SWDN 189 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~-~~~~ 189 (241)
..|++.|.++..+ +++.+..-.+++...++.|-..|+|.=.. .-.+++ ...+
T Consensus 1 ~~L~~~~~~~~~i--------~~~~~~~~r~~~~~~f~~~~~~vli~t~~-------------------~~~Gid~~~~~ 53 (78)
T PF00271_consen 1 KFLEKKGIKVAII--------HGDMSQKERQEILKKFNSGEIRVLIATDI-------------------LGEGIDLPDAS 53 (78)
T ss_dssp HHHHHTTSSEEEE--------STTSHHHHHHHHHHHHHTTSSSEEEESCG-------------------GTTSSTSTTES
T ss_pred CChHHCCCcEEEE--------ECCCCHHHHHHHHHHhhccCceEEEeecc-------------------ccccccccccc
Confidence 3578888888765 34555556667777777755555444332 123444 3557
Q ss_pred eEEeecCcccc
Q 026249 190 VVIAYEPVWAI 200 (241)
Q Consensus 190 ivIAYEPvWAI 200 (241)
.||-|+|+|..
T Consensus 54 ~vi~~~~~~~~ 64 (78)
T PF00271_consen 54 HVIFYDPPWSP 64 (78)
T ss_dssp EEEESSSESSH
T ss_pred cccccccCCCH
Confidence 78899998743
No 115
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=27.91 E-value=64 Score=32.85 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=43.9
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHh
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD 182 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~ 182 (241)
-|-|||- ..|+-...-..++--+|=-.- .-+--+++||+.||+||++|.-. +|...+..+|+.+-++ .+.
T Consensus 80 DFGGEVE-Rvl~MVDgvlLlVDA~EGpMP------QTrFVlkKAl~~gL~PIVVvNKi--Drp~Arp~~Vvd~vfD-Lf~ 149 (603)
T COG1217 80 DFGGEVE-RVLSMVDGVLLLVDASEGPMP------QTRFVLKKALALGLKPIVVINKI--DRPDARPDEVVDEVFD-LFV 149 (603)
T ss_pred Cccchhh-hhhhhcceEEEEEEcccCCCC------chhhhHHHHHHcCCCcEEEEeCC--CCCCCCHHHHHHHHHH-HHH
Confidence 4667764 334444444556666665332 12345678999999999999877 4555556666655444 443
Q ss_pred cC
Q 026249 183 AI 184 (241)
Q Consensus 183 ~i 184 (241)
.+
T Consensus 150 ~L 151 (603)
T COG1217 150 EL 151 (603)
T ss_pred Hh
Confidence 34
No 116
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.64 E-value=25 Score=28.74 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHH
Q 026249 117 GCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQL 177 (241)
Q Consensus 117 G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL 177 (241)
.++..+.|-||++..=+ |...-+-+..+...|.+|..|..= ...-|.+.+....+.
T Consensus 36 dVelifFGpse~~la~~--~~~~l~~l~~~~s~g~~p~AC~~v---a~~~gi~d~l~~~~~ 91 (113)
T COG3370 36 DVELIFFGPSEKLLAKN--DGDSLKMLQELRSLGIKPLACKVV---AENLGIEDELIFLGV 91 (113)
T ss_pred ceEEEEECchHHHHHhc--chHHHHHHHHHHHcCCcchHHHHH---HHhcCCcHHHHHhcc
Confidence 36788999999985544 444677888899999999999873 223455665555553
No 117
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.50 E-value=1.5e+02 Score=24.22 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=30.7
Q ss_pred HHHHHhcCCCEEEe--c-c-----------cccccccCCChHHHHHHHHHHHHCCCcEEEEe
Q 026249 110 VEQLKDIGCKWVVL--G-H-----------SERRHVIGEDDQFIGKKAAYALSEGLGVIACI 157 (241)
Q Consensus 110 a~mLkd~G~~~viI--G-H-----------SERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCI 157 (241)
.++||++|++-+++ | | -+.. .++ ...+..-+++|-+.||.+++=+
T Consensus 6 ~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp-~L~--~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 6 VDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHP-GLK--RDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHhCCCEEEEEcccccEEEEccCCCCcCCC-CCC--cCHHHHHHHHHHHCCCEEEEEE
Confidence 46777777777777 3 2 1211 222 3578999999999999998633
No 118
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=27.27 E-value=1.2e+02 Score=26.32 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCc
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 160 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEt 160 (241)
+..+.+.|++++++-+-++.......|-.+.++++... + .||++.|--
T Consensus 159 ~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~--~-ipvia~GGi 206 (232)
T TIGR03572 159 AREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV--S-IPVIALGGA 206 (232)
T ss_pred HHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC--C-CCEEEECCC
Confidence 36778899999999997775544445555666666553 3 588888865
No 119
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=27.14 E-value=2e+02 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=21.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhh
Q 026249 199 AIGTGKVATPEQAQEVHAALRDWLKNM 225 (241)
Q Consensus 199 AIGTG~~Aspe~iqe~~~~IR~~l~~~ 225 (241)
.||++..++|+.+.++.+.+++++.+.
T Consensus 261 ~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 261 QVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred eecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 466777778888899999998888764
No 120
>PRK04143 hypothetical protein; Provisional
Probab=26.31 E-value=1.8e+02 Score=26.76 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=24.3
Q ss_pred EEeecCcccccCCCC--CCHHHHHHHHHHHHHHHHhhcC
Q 026249 191 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKNMSQ 227 (241)
Q Consensus 191 vIAYEPvWAIGTG~~--Aspe~iqe~~~~IR~~l~~~~~ 227 (241)
.||+ | +||||.- +..+-++-+.+.+++++.+.-.
T Consensus 203 SIAf-P--~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~ 238 (264)
T PRK04143 203 SIAF-C--CISTGVFGFPKEEAAEIAIKTVLSWLKENPS 238 (264)
T ss_pred EEEe-c--cccCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4666 8 8999883 4444556778999999977543
No 121
>PRK00431 RNase III inhibitor; Provisional
Probab=25.99 E-value=1.3e+02 Score=25.15 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEeecCcccccCCCC--CCHHHHHHHHHHHHHHHHh
Q 026249 191 VIAYEPVWAIGTGKV--ATPEQAQEVHAALRDWLKN 224 (241)
Q Consensus 191 vIAYEPvWAIGTG~~--Aspe~iqe~~~~IR~~l~~ 224 (241)
.||+ | +||||.- +.-+-++.+.+.+++++..
T Consensus 115 sIa~-P--~lgtG~~g~p~~~~A~~~~~~i~~f~~~ 147 (177)
T PRK00431 115 SIAF-P--AISTGVYGYPLEDAARIAVKTVREFLTR 147 (177)
T ss_pred eEEE-C--ccccCccCCCHHHHHHHHHHHHHHHHhc
Confidence 3555 8 7888773 4455668888899888643
No 122
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=25.60 E-value=6.2e+02 Score=25.62 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=64.3
Q ss_pred HHHHHhcCCCEEEecccc---c---ccccCCChHHHHHHHHHHHHCCCcEEEE--eCCcHHHHHcCChHHHHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGHSE---R---RHVIGEDDQFIGKKAAYALSEGLGVIAC--IGEQLQEREAGKTFDVCFQQLKAYA 181 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSE---R---R~~f~Etd~~I~~Kv~~Al~~GL~pIlC--IGEtleere~g~t~~vl~~QL~~~l 181 (241)
...|+++|++.|-+|--- + +.-=+-+-+.+.+-++.+.++|+.+.+. .|=+ |+|.+-..+-++.++
T Consensus 209 L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLP------gqt~e~~~~t~~~l~ 282 (522)
T TIGR01211 209 IDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLP------GSSFERDLEMFREIF 282 (522)
T ss_pred HHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCC------CCCHHHHHHHHHHHH
Confidence 457889999999999521 1 0011345667888899999999964433 2321 334444445555544
Q ss_pred hcCCCCCceEEeecC-----------cccccCCCCCCHHHHHHHHHHHHHHHH
Q 026249 182 DAIPSWDNVVIAYEP-----------VWAIGTGKVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 182 ~~i~~~~~ivIAYEP-----------vWAIGTG~~Aspe~iqe~~~~IR~~l~ 223 (241)
.. ..+.+..|..-| -|.=|.=++++.+++.+++..+...+.
T Consensus 283 ~~-~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp 334 (522)
T TIGR01211 283 ED-PRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMP 334 (522)
T ss_pred hc-cCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 21 123344454445 565566667888888777777766553
No 123
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=25.59 E-value=2.3e+02 Score=27.30 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=24.3
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHH-CCCcEEEEeC
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS-EGLGVIACIG 158 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~-~GL~pIlCIG 158 (241)
+..+.+.|++|+.++..-....+..... ..++...+ .+ .||+.+|
T Consensus 124 ~~~a~~~GaD~I~~~pg~~~~~~~~~~~---~~l~~l~~~~~-iPI~a~G 169 (430)
T PRK07028 124 AVELEELGVDYINVHVGIDQQMLGKDPL---ELLKEVSEEVS-IPIAVAG 169 (430)
T ss_pred HHHHHhcCCCEEEEEeccchhhcCCChH---HHHHHHHhhCC-CcEEEEC
Confidence 3555788999998775332222322211 23333333 23 6888888
No 124
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=25.23 E-value=57 Score=24.55 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhcCC--CCCceEEeecCcccccCCCC-CCHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKV-ATPEQAQEV 214 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~--~~~~ivIAYEPvWAIGTG~~-Aspe~iqe~ 214 (241)
+.+.|.+=++.+|.... ..+. ||. | +||||.- .+++++.++
T Consensus 74 ~~~~L~~~~~~~l~~a~~~~~~s--Ia~-P--~ig~G~~g~~~~~~a~i 117 (118)
T PF01661_consen 74 SYEALESAYRNALQKAEENGIKS--IAF-P--AIGTGIGGFPWDEVAEI 117 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSE--EEE-E--STTSSTTSBTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcc--ccc-C--cccCCCCCCCHHHHHhh
Confidence 44444444444443322 3344 444 7 8999984 777777665
No 125
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=25.14 E-value=3.6e+02 Score=24.43 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHH----------------HHHHHHHHHCCCcEE---EEeCCcHHHHHcCChH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFI----------------GKKAAYALSEGLGVI---ACIGEQLQEREAGKTF 170 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I----------------~~Kv~~Al~~GL~pI---lCIGEtleere~g~t~ 170 (241)
+++|.++|++.+.+||.-.-.-..|..+.+ .+-++.|++.|+..| +++-+..-++..|++.
T Consensus 28 ~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~ 107 (262)
T cd07948 28 AKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSI 107 (262)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCH
Q ss_pred HHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHH
Q 026249 171 DVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRD 220 (241)
Q Consensus 171 ~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~ 220 (241)
+-..+++...+....+.. |+....+-..--++++++.++.+.+.+
T Consensus 108 ~e~~~~~~~~i~~a~~~G-----~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 108 TEIIESAVEVIEFVKSKG-----IEVRFSSEDSFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred HHHHHHHHHHHHHHHHCC-----CeEEEEEEeeCCCCHHHHHHHHHHHHH
No 126
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=25.11 E-value=1.6e+02 Score=23.27 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=45.9
Q ss_pred cccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHH
Q 026249 103 AFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQ 176 (241)
Q Consensus 103 A~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~Q 176 (241)
.-+|..-.+.|+++|++.+..++- .++.+.|.+.++.+++ .-..|+..|-+-- -....|.+++.+.
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v------~Dd~~~I~~~l~~~~~-~~dliittGG~g~-g~~D~t~~~l~~~ 82 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIV------PDDKEAIKEALREALE-RADLVITTGGTGP-GPDDVTPEAVAEA 82 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEe------CCCHHHHHHHHHHHHh-CCCEEEEcCCCCC-CCCcCcHHHHHHH
Confidence 345666678899999987776665 2677789999988886 4778999998752 2234455555543
No 127
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.07 E-value=4.4e+02 Score=24.12 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=64.7
Q ss_pred cHHHHHhcCCCEEEec------ccccc--cccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHH
Q 026249 109 SVEQLKDIGCKWVVLG------HSERR--HVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY 180 (241)
Q Consensus 109 Sa~mLkd~G~~~viIG------HSERR--~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~ 180 (241)
..+..+++|++.+-+. |.++. +...|.-+.+..-++.|.+.|+.+.+++.....-. -...+.+.+-++.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~--r~~~~~~~~~~~~~ 156 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM--RDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC--cCCHHHHHHHHHHH
Confidence 5778888999988777 77664 34455555577778999999999988886310000 12355666656554
Q ss_pred HhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHH
Q 026249 181 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 181 l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
.+. ..+.+.|+ =|--.++|+++.+.+..+|+.
T Consensus 157 ~~~--G~~~i~l~-------DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 157 SDL--PIKRIMLP-------DTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHc--CCCEEEec-------CCCCCCCHHHHHHHHHHHHhh
Confidence 431 12233332 133347899999999888864
No 128
>PRK07695 transcriptional regulator TenI; Provisional
Probab=25.02 E-value=1.4e+02 Score=25.32 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.6
Q ss_pred HHHHHhcCCCEEEecc
Q 026249 110 VEQLKDIGCKWVVLGH 125 (241)
Q Consensus 110 a~mLkd~G~~~viIGH 125 (241)
+.++.++|++|+++||
T Consensus 108 a~~a~~~Gadyi~~g~ 123 (201)
T PRK07695 108 AIQAEKNGADYVVYGH 123 (201)
T ss_pred HHHHHHcCCCEEEECC
Confidence 4567789999999998
No 129
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.78 E-value=5.2e+02 Score=23.34 Aligned_cols=94 Identities=17% Similarity=0.085 Sum_probs=58.9
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCce
Q 026249 111 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV 190 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~i 190 (241)
++..+.|++++=+..+- ++ -+.+.+-++.|.+.|+.+.+|++-+.. ..-+.+.+.+.++.+.+- ....+
T Consensus 98 ~~~~~~g~~~iri~~~~-----~~-~~~~~~~i~~ak~~G~~v~~~i~~~~~---~~~~~~~~~~~~~~~~~~--Ga~~i 166 (275)
T cd07937 98 EKAAKNGIDIFRIFDAL-----ND-VRNLEVAIKAVKKAGKHVEGAICYTGS---PVHTLEYYVKLAKELEDM--GADSI 166 (275)
T ss_pred HHHHHcCCCEEEEeecC-----Ch-HHHHHHHHHHHHHCCCeEEEEEEecCC---CCCCHHHHHHHHHHHHHc--CCCEE
Confidence 45677888887665331 11 245778889999999999888853211 123566666666655431 12234
Q ss_pred EEeecCcccccCCCCCCHHHHHHHHHHHHHHH
Q 026249 191 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 222 (241)
Q Consensus 191 vIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l 222 (241)
.|+ - |--.++|+++.+.++.+|+.+
T Consensus 167 ~l~----D---T~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 167 CIK----D---MAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred EEc----C---CCCCCCHHHHHHHHHHHHHhC
Confidence 333 2 222477999999999999764
No 130
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.57 E-value=1.5e+02 Score=21.08 Aligned_cols=52 Identities=25% Similarity=0.253 Sum_probs=38.7
Q ss_pred ccccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHH-HCCCcEEE
Q 026249 102 GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYAL-SEGLGVIA 155 (241)
Q Consensus 102 GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al-~~GL~pIl 155 (241)
|-|+|==-+.+|+++|++-+++-.+++=. ..-|+.+.+.+...+ +.|++.+.
T Consensus 7 gG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 7 GGFIGIELAEALAELGKEVTLIERSDRLL--PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred cCHHHHHHHHHHHHhCcEEEEEeccchhh--hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 56777777899999999999998888733 555666777775555 56677665
No 131
>PLN02389 biotin synthase
Probab=24.57 E-value=2.5e+02 Score=27.00 Aligned_cols=104 Identities=22% Similarity=0.175 Sum_probs=60.0
Q ss_pred cHHHHHhcCCCEEEeccc--c--ccccc-CCChHHHHHHHHHHHHCCCcE----EEEeCCcHHHHHcCChHHHHHHHHHH
Q 026249 109 SVEQLKDIGCKWVVLGHS--E--RRHVI-GEDDQFIGKKAAYALSEGLGV----IACIGEQLQEREAGKTFDVCFQQLKA 179 (241)
Q Consensus 109 Sa~mLkd~G~~~viIGHS--E--RR~~f-~Etd~~I~~Kv~~Al~~GL~p----IlCIGEtleere~g~t~~vl~~QL~~ 179 (241)
....||++|++.+-++.- + -|++. ..+-+..-+-++.|.+.|+.+ |+=.||+.++|- +.+ ..|+.
T Consensus 180 ~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv-----~~l-~~Lr~ 253 (379)
T PLN02389 180 QAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRV-----GLL-HTLAT 253 (379)
T ss_pred HHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHH-----HHH-HHHHh
Confidence 356678889999877764 2 12221 345566678889999999964 344578887772 111 12222
Q ss_pred HHhcCC-CCCceEE-eecCcccccC----CCCCCHHHHHHHHHHHHHHHHh
Q 026249 180 YADAIP-SWDNVVI-AYEPVWAIGT----GKVATPEQAQEVHAALRDWLKN 224 (241)
Q Consensus 180 ~l~~i~-~~~~ivI-AYEPvWAIGT----G~~Aspe~iqe~~~~IR~~l~~ 224 (241)
+. ....+.| .+-|.- || -.++++++.-.+++..|=.+-+
T Consensus 254 ----L~~~~~~v~l~~l~P~~--GTpL~~~~~~s~~e~lr~iAi~Rl~lP~ 298 (379)
T PLN02389 254 ----LPEHPESVPINALVAVK--GTPLEDQKPVEIWEMVRMIATARIVMPK 298 (379)
T ss_pred ----cccCCcEEecccceecC--CCcCCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 21 1111111 122311 44 2358899988899998877633
No 132
>PRK10799 metal-binding protein; Provisional
Probab=24.41 E-value=43 Score=29.96 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYA 181 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l 181 (241)
....++.||+..|-|=-- + .-+..|.+.|+. ++.+|=...|+- ..+.+.+.|+..+
T Consensus 179 i~~a~~~gaD~~ITGd~k------~------h~~~~A~~~gl~-li~~GH~~sE~~---~~~~la~~L~~~~ 234 (247)
T PRK10799 179 IDSAARFGVDAFITGEVS------E------QTIHSAREQGLH-FYAAGHHATERG---GIRALSEWLNENT 234 (247)
T ss_pred HHHHHHcCCCEEEECCcc------h------HHHHHHHHCCCe-EEEcCchHHHHH---HHHHHHHHHHHhc
Confidence 444566799999988432 1 125678888988 667888766662 3445666666544
No 133
>PLN02783 diacylglycerol O-acyltransferase
Probab=23.83 E-value=4e+02 Score=24.86 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcC
Q 026249 206 ATPEQAQEVHAALRDWLKNMSQ 227 (241)
Q Consensus 206 Aspe~iqe~~~~IR~~l~~~~~ 227 (241)
+++|++++.|+.+.+.+.+++.
T Consensus 278 ~~~e~v~~~~~~~~~al~~L~~ 299 (315)
T PLN02783 278 PSQEEVAEVLEQFVEALQDLFE 299 (315)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888888763
No 134
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.78 E-value=2.5e+02 Score=25.31 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCCceEEeecCcc---------------cccCCCCCCHHHHHHHHHHHHHH
Q 026249 173 CFQQLKAYADAIPSWDNVVIAYEPVW---------------AIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 173 l~~QL~~~l~~i~~~~~ivIAYEPvW---------------AIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
+.++++..++.+....+.++.|.|.| .+..|..++|.++.++.+.||+.
T Consensus 146 l~~~~~~~l~~~~~~~~~~~t~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 209 (276)
T cd01016 146 LDAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVER 209 (276)
T ss_pred HHHHHHHHHhhCchhcCeEEEecCcHHHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHc
Confidence 34444444444433345677887744 34568889999999999999874
No 135
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=23.62 E-value=4.5e+02 Score=24.08 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHc--CChHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHH
Q 026249 134 EDDQFIGKKAAYALSEGLGVIACIGEQLQEREA--GKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQA 211 (241)
Q Consensus 134 Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~--g~t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~i 211 (241)
.+...+.+.++.+.+.|+++++.||--...... ....+.+.+.|...+..- .++-|=|-+|..-.- ..++++.
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~-g~DGiDiD~E~~~~~----~~~~~~~ 131 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEY-GFDGLDIDLESGSNP----LNATPVI 131 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCeEEEecccCCcc----CCcHHHH
Confidence 355667888999999999999999864321110 112233444444444321 345566788874321 1236677
Q ss_pred HHHHHHHHHHHHhhcC
Q 026249 212 QEVHAALRDWLKNMSQ 227 (241)
Q Consensus 212 qe~~~~IR~~l~~~~~ 227 (241)
.....+||+ |++.++
T Consensus 132 ~~~~~~lk~-lr~~~~ 146 (312)
T cd02871 132 TNLISALKQ-LKDHYG 146 (312)
T ss_pred HHHHHHHHH-HHHHcC
Confidence 777777765 344444
No 136
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=23.50 E-value=1e+02 Score=28.86 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=31.9
Q ss_pred cHHHHHhcCCCEEEeccc-----cccc-ccCCChHHHHHHHHHHHHCCCcEEEEeC
Q 026249 109 SVEQLKDIGCKWVVLGHS-----ERRH-VIGEDDQFIGKKAAYALSEGLGVIACIG 158 (241)
Q Consensus 109 Sa~mLkd~G~~~viIGHS-----ERR~-~f~Etd~~I~~Kv~~Al~~GL~pIlCIG 158 (241)
...++|++|+++|-||.. |.+. .| +=+.+.+-+..|.++||.+|||+.
T Consensus 15 d~~~m~~~G~n~vri~~~~W~~lEP~eG~y--dF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEFSWSWLEPEEGQY--DFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHT-SEEEE-CCEHHHH-SBTTB-----HHHHHHHHHHHCTT-EEEEEEC
T ss_pred HHHHHHHcCCCEEEEEEechhhccCCCCee--ecHHHHHHHHHHHhccCeEEEEec
Confidence 457899999999998862 4332 11 123467778889999999999997
No 137
>PRK10878 hypothetical protein; Provisional
Probab=23.23 E-value=82 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.366 Sum_probs=21.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHH
Q 026249 197 VWAIGTGKVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 197 vWAIGTG~~Aspe~iqe~~~~IR~~l~ 223 (241)
-|..|.+.+++|+. +++++.||+..+
T Consensus 40 ~W~~g~~~p~d~~l-~~iV~~Ir~~~~ 65 (72)
T PRK10878 40 NWLMNHGKPADAEL-ERMVRLIQTRNR 65 (72)
T ss_pred HHHhCCCCCCCHHH-HHHHHHHHHhcC
Confidence 48999999988887 569999998543
No 138
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=23.09 E-value=56 Score=26.03 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHhcCCCEEEeccccccccc
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVI 132 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f 132 (241)
..++++.++++++.||+-++...
T Consensus 95 ~~~~~~~~~d~vi~GHtH~~~~~ 117 (155)
T cd00841 95 LYLAKEGGADVVLYGHTHIPVIE 117 (155)
T ss_pred hhhhhhcCCCEEEECcccCCccE
Confidence 56788999999999999988654
No 139
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.96 E-value=1.3e+02 Score=24.18 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=42.9
Q ss_pred ccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHH
Q 026249 106 GEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQ 175 (241)
Q Consensus 106 GEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~ 175 (241)
|..-.++|++.|++.+-.++ ..++-+.|...+..+++.. ..|++.|-+-- -....|.+++.+
T Consensus 19 ~~~l~~~l~~~G~~v~~~~~------v~Dd~~~i~~~l~~~~~~~-D~VittGG~g~-~~~D~t~~a~~~ 80 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRYGI------VPDDPDAIKEALRRALDRA-DLVITTGGTGP-GPDDVTPEALAE 80 (144)
T ss_dssp HHHHHHHHHHTTEEEEEEEE------EESSHHHHHHHHHHHHHTT-SEEEEESSSSS-STTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeeEEEE------ECCCHHHHHHHHHhhhccC-CEEEEcCCcCc-ccCCcccHHHHH
Confidence 44557889999987664444 4678888999999999888 88999996631 112334555544
No 140
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.55 E-value=5.5e+02 Score=22.77 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=48.5
Q ss_pred ccCHHHHHHHHHHHhhcccCCCcceeEeeeeeccccCCccccccccHHH---HHhcCCCEEEecccccccccCCChHHHH
Q 026249 64 NGTKESITKLVSDLNDAKLEADVDRIEIAAQNSWVGKGGAFTGEISVEQ---LKDIGCKWVVLGHSERRHVIGEDDQFIG 140 (241)
Q Consensus 64 n~t~~~~~~~~~~l~~~~~~~~v~~i~igAQnv~~~~~GA~TGEVSa~m---Lkd~G~~~viIGHSERR~~f~Etd~~I~ 140 (241)
+.+.++..++++.|.+.- |..|++| + +..++-..+. |++.+-+-.+..+. | .++
T Consensus 16 ~~~~~~k~~i~~~L~~~G----v~~iE~g----~-----p~~~~~~~e~~~~l~~~~~~~~~~~~~--r--~~~------ 72 (259)
T cd07939 16 AFSREEKLAIARALDEAG----VDEIEVG----I-----PAMGEEEREAIRAIVALGLPARLIVWC--R--AVK------ 72 (259)
T ss_pred CCCHHHHHHHHHHHHHcC----CCEEEEe----c-----CCCCHHHHHHHHHHHhcCCCCEEEEec--c--CCH------
Confidence 556777888888776642 3567776 1 1123333233 33322222233331 1 111
Q ss_pred HHHHHHHHCCCcEEEEeC---CcHHHHHcCChHHHHHHHHHHHHh
Q 026249 141 KKAAYALSEGLGVIACIG---EQLQEREAGKTFDVCFQQLKAYAD 182 (241)
Q Consensus 141 ~Kv~~Al~~GL~pIlCIG---Etleere~g~t~~vl~~QL~~~l~ 182 (241)
+-++.|++.|+..|-... |..-++.-|.+.+...+.+...++
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~ 117 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVG 117 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 335677888877544332 222244556666666665555554
No 141
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=22.43 E-value=1.9e+02 Score=23.36 Aligned_cols=52 Identities=27% Similarity=0.218 Sum_probs=41.8
Q ss_pred ccCCccccccccHHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEE
Q 026249 98 VGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIAC 156 (241)
Q Consensus 98 ~~~~GA~TGEVSa~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlC 156 (241)
....++|.+.--.+.|++.|++.++|.= -.+|--|..-+..|.+.|+.+++.
T Consensus 92 K~~~saf~~t~L~~~L~~~gi~~vil~G-------~~t~~CV~~Ta~~a~~~g~~v~v~ 143 (174)
T PF00857_consen 92 KNRYSAFFGTDLDEILRKRGIDTVILCG-------VATDVCVLATARDAFDRGYRVIVV 143 (174)
T ss_dssp ESSSSTTTTSSHHHHHHHTTESEEEEEE-------ESTTTHHHHHHHHHHHTT-EEEEE
T ss_pred eecccccccccccccccccccceEEEcc-------cccCcEEehhHHHHHHCCCEEEEE
Confidence 4567999999999999999998877642 246677899999999999999983
No 142
>PRK14072 6-phosphofructokinase; Provisional
Probab=22.31 E-value=2.1e+02 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=35.0
Q ss_pred EEEecccccccc--cCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHH
Q 026249 120 WVVLGHSERRHV--IGEDDQFIGKKAAYALSEGLGVIACIGEQLQER 164 (241)
Q Consensus 120 ~viIGHSERR~~--f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleer 164 (241)
.+++|-| |... |.++++...+=++...++|+..+++||=...-+
T Consensus 72 Gt~Lgss-R~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~ 117 (416)
T PRK14072 72 SGALGSC-RYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMD 117 (416)
T ss_pred CeEeccC-CCCCcccccChHHHHHHHHHHHHcCCCEEEEECChHHHH
Confidence 5699999 6665 555677788888889999999999999876444
No 143
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=21.96 E-value=1.7e+02 Score=27.39 Aligned_cols=99 Identities=10% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEE----EEeCCcHHHHHcCChHHHHHHHHHHHHhcCCC
Q 026249 111 EQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI----ACIGEQLQEREAGKTFDVCFQQLKAYADAIPS 186 (241)
Q Consensus 111 ~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pI----lCIGEtleere~g~t~~vl~~QL~~~l~~i~~ 186 (241)
+.|++.|.+.+++.|-..- .|.++.+.+-++++.++|+... +.-|- +...+.+.+-.+. +..+ .
T Consensus 214 ~~L~~~~~~~~~vsh~nh~---~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gv-------nD~~~~l~~L~~~-l~~~-g 281 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHC---NEITEEFAEAMKKLRTVNVTLLNQSVLLRGV-------NDRAQILAKLSIA-LFKV-G 281 (331)
T ss_pred HHHHhcCCcEEEEccCCCh---HhCCHHHHHHHHHHHHcCCEEEeecceECCc-------CCCHHHHHHHHHH-Hhhc-C
Confidence 4788999999999988653 3667788899999999998532 22332 2233333322222 2111 1
Q ss_pred CCceEE-eecCcccccCC-CCCCHHHHHHHHHHHHHHHH
Q 026249 187 WDNVVI-AYEPVWAIGTG-KVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 187 ~~~ivI-AYEPvWAIGTG-~~Aspe~iqe~~~~IR~~l~ 223 (241)
..+.++ -+-|+ =|+. -..+.+++.++.+.+|+.+.
T Consensus 282 V~pyyl~~~~~~--~g~~~f~~~~~~~~~i~~~l~~~~s 318 (331)
T TIGR00238 282 IIPYYLHYLDKV--QGAKHFLVPDAEAAQIVKELARLTS 318 (331)
T ss_pred eecCeecCcCCC--CCcccccCCHHHHHHHHHHHHhcCC
Confidence 112222 22333 2222 24678888888777777653
No 144
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=21.93 E-value=1.8e+02 Score=24.87 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDW 221 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~ 221 (241)
..+.+.+|++..++. .|+-+|-+|...+++.++.+.+++++.
T Consensus 52 ~~~~~~~~l~~~~~~-----------~~~~~i~~G~l~~~~~~~~i~~~~~~~ 93 (242)
T cd01169 52 PPEFVAAQLDAVLED-----------IPVDAIKIGMLGSAEIIEAVAEALKDY 93 (242)
T ss_pred CHHHHHHHHHHHHhC-----------CCCCEEEECCCCCHHHHHHHHHHHHhC
Confidence 457788899887742 366788888888899888888888664
No 145
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=21.88 E-value=68 Score=31.13 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEeCCcH
Q 026249 134 EDDQFIGKKAAYALSEGLGVIACIGEQL 161 (241)
Q Consensus 134 Etd~~I~~Kv~~Al~~GL~pIlCIGEtl 161 (241)
|-.+...+++..|.+.|= .|+|||.|.
T Consensus 253 ~I~~eta~~In~ak~~G~-RIiAVGTT~ 279 (366)
T PRK01424 253 SITPETAEIINKAKQEGR-RIIAVGTTT 279 (366)
T ss_pred EECHHHHHHHHHHHHcCC-eEEEEecce
Confidence 355668899999998885 699999884
No 146
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.87 E-value=4.1e+02 Score=21.08 Aligned_cols=46 Identities=17% Similarity=0.093 Sum_probs=28.6
Q ss_pred cEEEEeCCcHHHHHc--CChHHHHHHHHHHHHhcC--C-CCCceEEeecCcc
Q 026249 152 GVIACIGEQLQEREA--GKTFDVCFQQLKAYADAI--P-SWDNVVIAYEPVW 198 (241)
Q Consensus 152 ~pIlCIGEtleere~--g~t~~vl~~QL~~~l~~i--~-~~~~ivIAYEPvW 198 (241)
.+++|+|-+.--+.. +...+...++++..++.+ . ...+++ ...|..
T Consensus 64 ~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii-~~~p~~ 114 (191)
T cd01834 64 VVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIV-LVSPIA 114 (191)
T ss_pred EEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEE-EECCcc
Confidence 457899988654421 356777788888888766 3 234444 455654
No 147
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.61 E-value=4.8e+02 Score=24.95 Aligned_cols=101 Identities=18% Similarity=0.054 Sum_probs=61.0
Q ss_pred HHHHHhcCCCEEEec------ccccc--cccCCChHHHHHHHHHHHHCCCcEEEEe----CCcHHHHHcCChHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVLG------HSERR--HVIGEDDQFIGKKAAYALSEGLGVIACI----GEQLQEREAGKTFDVCFQQL 177 (241)
Q Consensus 110 a~mLkd~G~~~viIG------HSERR--~~f~Etd~~I~~Kv~~Al~~GL~pIlCI----GEtleere~g~t~~vl~~QL 177 (241)
.+...++|++++-+. |.++. ....|.-+.+.+-++.|.++|+.+.+++ |-..+.| -..+.+.+.+
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r---~~~~~l~~~~ 203 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP---VPPSKVAYVA 203 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC---CCHHHHHHHH
Confidence 456678899987776 55543 3344555556688899999999986444 3222111 2455666666
Q ss_pred HHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHH
Q 026249 178 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 222 (241)
Q Consensus 178 ~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l 222 (241)
+.+.+. ..+.|.|+= |--.++|.++.+.++.||+.+
T Consensus 204 ~~~~~~--Gad~I~l~D-------T~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 204 KELYDM--GCYEISLGD-------TIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHc--CCCEEEecC-------CcCCcCHHHHHHHHHHHHHhC
Confidence 655431 122333321 222478999999999998754
No 148
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.49 E-value=6.2e+02 Score=23.04 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=61.6
Q ss_pred cHHHHHhcCCCEEE-ecc----cccc-cccCC--ChHHHHHHHHHHHHCCCcEE----EEeCCcHHHHHcCChHHHHHHH
Q 026249 109 SVEQLKDIGCKWVV-LGH----SERR-HVIGE--DDQFIGKKAAYALSEGLGVI----ACIGEQLQEREAGKTFDVCFQQ 176 (241)
Q Consensus 109 Sa~mLkd~G~~~vi-IGH----SERR-~~f~E--td~~I~~Kv~~Al~~GL~pI----lCIGEtleere~g~t~~vl~~Q 176 (241)
..+.||++|++.+. +|. .+-| .++.. +.+..-+-++.|.+.|+.+. +=.||+.+++.. +...
T Consensus 109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~--~l~~---- 182 (309)
T TIGR00423 109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVE--HLLR---- 182 (309)
T ss_pred HHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHH--HHHH----
Confidence 46789999999775 342 2223 33332 55566688899999998764 223688887741 2211
Q ss_pred HHHHHhcCCCCCc-eEEeecCcccccCC-------CCCCHHHHHHHHHHHHHHHH
Q 026249 177 LKAYADAIPSWDN-VVIAYEPVWAIGTG-------KVATPEQAQEVHAALRDWLK 223 (241)
Q Consensus 177 L~~~l~~i~~~~~-ivIAYEPvWAIGTG-------~~Aspe~iqe~~~~IR~~l~ 223 (241)
|+..-.....+.. +-+.|-| -||. ..+++++.-.+++.-|=.+-
T Consensus 183 lr~l~~~~~~f~~fiP~~f~~---~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp 234 (309)
T TIGR00423 183 IRKIQEKTGGFTEFIPLPFQP---ENNPYLEGEVRKGASGIDDLKVIAISRILLN 234 (309)
T ss_pred HHhhchhhCCeeeEEeeeecC---CCChhhccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 2211100001222 2235656 2442 35889999999998887764
No 149
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=21.46 E-value=1.6e+02 Score=28.98 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHH
Q 026249 169 TFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRD 220 (241)
Q Consensus 169 t~~vl~~QL~~~l~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~ 220 (241)
..+++.+||+.++.++ |+=+|.+|...+++.++.+.+++++
T Consensus 62 ~~~~~~~ql~~~~~d~-----------~~~aik~G~l~~~~~i~~i~~~l~~ 102 (502)
T PLN02898 62 PLDFVAEQLKSVLSDM-----------PVDVVKTGMLPSAEIVKVLCQALKE 102 (502)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHh
Confidence 3456678888777421 6678888888888888877777765
No 150
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=21.35 E-value=3e+02 Score=28.14 Aligned_cols=73 Identities=30% Similarity=0.301 Sum_probs=41.8
Q ss_pred cccccHHHHHhcCCCE--EEecccccccccCCChHHHHHHHHHHHHCCCcEEEE--eCCcHHHHHcCChHHHHHHHHHHH
Q 026249 105 TGEISVEQLKDIGCKW--VVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIAC--IGEQLQEREAGKTFDVCFQQLKAY 180 (241)
Q Consensus 105 TGEVSa~mLkd~G~~~--viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlC--IGEtleere~g~t~~vl~~QL~~~ 180 (241)
|-|-=..-|+..|.+- .+||-+.|..-=|=+...=.+-++.-.+-...+.+| |||. .
T Consensus 378 Tae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEE-------------------G 438 (542)
T COG1111 378 TAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEE-------------------G 438 (542)
T ss_pred HHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccc-------------------c
Confidence 4455556667777666 678877776644444444444444444445666666 3332 2
Q ss_pred HhcCCCCCceEEeecCcc
Q 026249 181 ADAIPSWDNVVIAYEPVW 198 (241)
Q Consensus 181 l~~i~~~~~ivIAYEPvW 198 (241)
|+ | ..-++||-||||=
T Consensus 439 LD-I-p~vDlVifYEpvp 454 (542)
T COG1111 439 LD-I-PEVDLVIFYEPVP 454 (542)
T ss_pred CC-C-CcccEEEEecCCc
Confidence 21 1 2346889999974
No 151
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=21.33 E-value=1.3e+02 Score=26.74 Aligned_cols=57 Identities=18% Similarity=0.049 Sum_probs=36.3
Q ss_pred cCCcccccccc--HHHHHhcCCCEEEecccccccccCCChH-------HHHHHHHHHHHCCCcEEEE
Q 026249 99 GKGGAFTGEIS--VEQLKDIGCKWVVLGHSERRHVIGEDDQ-------FIGKKAAYALSEGLGVIAC 156 (241)
Q Consensus 99 ~~~GA~TGEVS--a~mLkd~G~~~viIGHSERR~~f~Etd~-------~I~~Kv~~Al~~GL~pIlC 156 (241)
.+.|.++-+.. ...|++.|.+-++++|..-|....|+.+ .|+.|+...+ .|+.-+++
T Consensus 113 ~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~~~~~~de~G~~~~r~~P~i~~K~~n~l-~G~~DvV~ 178 (220)
T TIGR01618 113 QHYQKLDLWFLDLLTVLKESNKNIYATAWELTNQSSGESGQIYNRYQPDIREKVLNAF-LGLTDVVG 178 (220)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCcEEEEEeeccccccCCCCCCcceechhhhhhHHHhh-cccccEEE
Confidence 34455454443 2457789999999999976655555433 5677777766 35555543
No 152
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=20.90 E-value=30 Score=28.64 Aligned_cols=10 Identities=60% Similarity=1.281 Sum_probs=7.1
Q ss_pred EEec-cccccc
Q 026249 121 VVLG-HSERRH 130 (241)
Q Consensus 121 viIG-HSERR~ 130 (241)
+||| |||+|+
T Consensus 45 IlVGHHSE~R~ 55 (126)
T PF12083_consen 45 ILVGHHSEKRH 55 (126)
T ss_pred eeccccchHHH
Confidence 5677 588874
No 153
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=20.77 E-value=2.3e+02 Score=23.19 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=18.8
Q ss_pred CCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHhcCCCCCceEEee
Q 026249 150 GLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAY 194 (241)
Q Consensus 150 GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~~i~~~~~ivIAY 194 (241)
.-.+|+++|=+. +...+....+++.+++.++. +.++|-|
T Consensus 26 ~~~~i~~~gg~~-----d~~~gt~~~~i~~ai~~~~~-dGVlVlt 64 (124)
T PRK14484 26 PDVPIIYAGGTE-----DGRIGTSFDQIQEAIEKNES-DGVLIFF 64 (124)
T ss_pred CCCCEEEecCCC-----CCCccchHHHHHHHHHhcCc-CCeEEEE
Confidence 345666666442 22334444555555554444 4444444
No 154
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=20.74 E-value=7.2e+02 Score=23.48 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=60.3
Q ss_pred HHHHHhcCCCEEEe--c----ccccc--cccCCChHHHHHHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHH
Q 026249 110 VEQLKDIGCKWVVL--G----HSERR--HVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYA 181 (241)
Q Consensus 110 a~mLkd~G~~~viI--G----HSERR--~~f~Etd~~I~~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l 181 (241)
.+.+.+.|++++-+ + |.++. ....|.-+.+..-++.|.+.|+.+.+|+-.. ...+.+.+.+-++.+.
T Consensus 77 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda-----~r~~~~~l~~~~~~~~ 151 (363)
T TIGR02090 77 IDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDA-----TRTDIDFLIKVFKRAE 151 (363)
T ss_pred HHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeec-----CCCCHHHHHHHHHHHH
Confidence 67888999998776 4 43331 1112223456677888999999987776432 1134566666655544
Q ss_pred hcCCCCCceEEeecCcccccCCCCCCHHHHHHHHHHHHHHH
Q 026249 182 DAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 222 (241)
Q Consensus 182 ~~i~~~~~ivIAYEPvWAIGTG~~Aspe~iqe~~~~IR~~l 222 (241)
+ . ..+.+.|+= |--.++|+++.+.++.||+.+
T Consensus 152 ~-~-g~~~i~l~D-------T~G~~~P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 152 E-A-GADRINIAD-------TVGVLTPQKMEELIKKLKENV 183 (363)
T ss_pred h-C-CCCEEEEeC-------CCCccCHHHHHHHHHHHhccc
Confidence 2 1 122333321 222588999999999998754
No 155
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=20.69 E-value=26 Score=18.55 Aligned_cols=7 Identities=57% Similarity=1.526 Sum_probs=5.1
Q ss_pred CcccccC
Q 026249 196 PVWAIGT 202 (241)
Q Consensus 196 PvWAIGT 202 (241)
|.||+|.
T Consensus 2 ~~WAvGh 8 (14)
T PF02044_consen 2 PQWAVGH 8 (14)
T ss_dssp -TCHHHC
T ss_pred Cccceee
Confidence 7899985
No 156
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=20.68 E-value=5e+02 Score=21.59 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHhcCCCEEEecccccccccCCChHHHHHHHHHHHHCCCcEEEEeC
Q 026249 110 VEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 158 (241)
Q Consensus 110 a~mLkd~G~~~viIGHSERR~~f~Etd~~I~~Kv~~Al~~GL~pIlCIG 158 (241)
.++++++|++++++ |-+- + +....-++.+.+.|+.+++=+.
T Consensus 72 ~~~~~~~gadgv~v-h~~~------~-~~~~~~~~~~~~~g~~~~~~~~ 112 (210)
T TIGR01163 72 IEDFAEAGADIITV-HPEA------S-EHIHRLLQLIKDLGAKAGIVLN 112 (210)
T ss_pred HHHHHHcCCCEEEE-ccCC------c-hhHHHHHHHHHHcCCcEEEEEC
Confidence 78899999999888 5532 2 2334555677778888777544
No 157
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=20.29 E-value=1.3e+02 Score=23.75 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCcEEEEeCCcHHHHHcCChHHHHHHHHHHHHh
Q 026249 141 KKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD 182 (241)
Q Consensus 141 ~Kv~~Al~~GL~pIlCIGEtleere~g~t~~vl~~QL~~~l~ 182 (241)
+|..+++.+.|.||+=||. .|-|..|+ +|++.+|.
T Consensus 8 r~~LR~~ah~l~Pvv~IGk------~Glt~~vi-~ei~~aL~ 42 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGS------NGLTEGVL-AEIEQALE 42 (97)
T ss_pred HHHHHHhcCCCCCeEEECC------CCCCHHHH-HHHHHHHH
Confidence 6788999999999999995 47776664 67777775
No 158
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.25 E-value=62 Score=28.93 Aligned_cols=28 Identities=39% Similarity=0.516 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCccc
Q 026249 204 KVATPEQAQEVHAALRDWLKNMSQQTLP 231 (241)
Q Consensus 204 ~~Aspe~iqe~~~~IR~~l~~~~~~~~a 231 (241)
+++||||.++.....+++|...|+..++
T Consensus 85 k~aspeQ~~~F~~aF~~yl~q~Y~~aL~ 112 (202)
T COG2854 85 KTASPEQRQAFFKAFRTYLEQTYGQALL 112 (202)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999986543
Done!