RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026249
(241 letters)
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 308 bits (789), Expect = e-106
Identities = 178/262 (67%), Positives = 199/262 (75%), Gaps = 37/262 (14%)
Query: 1 MASMISTNCAQFSGLRRSSPT---------QSYSQHVNSHLRLVSS-----RRPRRSSSV 46
MA+ T FSGLRR SP QS+ VNS RLVSS R PR V
Sbjct: 1 MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPR---GV 57
Query: 47 VAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD------------------- 87
VAMA S KFFVGGNWKCNGTK+SI KL+SDLN A LEADVD
Sbjct: 58 VAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTD 117
Query: 88 RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYAL 147
RI+I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYAL
Sbjct: 118 RIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYAL 177
Query: 148 SEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVAT 207
SEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+
Sbjct: 178 SEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVAS 237
Query: 208 PEQAQEVHAALRDWL-KNMSQQ 228
P+QAQEVH A+R WL KN+S++
Sbjct: 238 PQQAQEVHVAVRGWLKKNVSEE 259
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 261 bits (669), Expect = 2e-88
Identities = 91/192 (47%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDA-KLEADVD--------------------RIEIAA 93
V GNWK NGT +L LN K E+ V+ +I++ A
Sbjct: 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGVEVVVAPPFTYLAAVAEALEGSKIKVGA 60
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
QN GAFTGEIS E LKD G K+V++GHSERR GE D+ + KK AL GL
Sbjct: 61 QNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTP 120
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQE 213
I C+GE L+EREAGKT +V QL A + VVIAYEPVWAIGTGK A+PEQAQE
Sbjct: 121 ILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQE 180
Query: 214 VHAALRDWLKNM 225
VHA +R L +
Sbjct: 181 VHAFIRKLLAEL 192
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 258 bits (662), Expect = 3e-87
Identities = 101/199 (50%), Positives = 123/199 (61%), Gaps = 23/199 (11%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEAD-VD--------------------R 88
K FVGGNWKCNGTK SI +L+ N K + + VD
Sbjct: 1 MMKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNVDVVVAPPSLHIPLVQEKLKNKN 60
Query: 89 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS 148
+I++QN + GAFTGEIS E LKD+G W +LGHSERR GE ++ + +K AL
Sbjct: 61 FKISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALE 120
Query: 149 EGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVA 206
GL VI CIGE L+EREAG+T DV +QL+A + +WDN+VIAYEPVWAIGTGKVA
Sbjct: 121 NGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKVA 180
Query: 207 TPEQAQEVHAALRDWLKNM 225
TPEQAQEVHA +R WL
Sbjct: 181 TPEQAQEVHAFIRKWLAEK 199
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
Length = 253
Score = 252 bits (645), Expect = 1e-84
Identities = 109/194 (56%), Positives = 135/194 (69%), Gaps = 23/194 (11%)
Query: 52 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDRIE--------------------- 90
+ KFFVGGNWKCNGT E + K+V+ LN+A++ ++ D +E
Sbjct: 2 ARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSE-DVVEVVVSPPFVFLPLVKSLLRPDF 60
Query: 91 -IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSE 149
+AAQN WV KGGAFTGEIS E L ++G WV+LGHSERR ++GE ++F+G K AYALS+
Sbjct: 61 QVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120
Query: 150 GLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPE 209
GL VIAC+GE L++RE+G T DV Q KA AD + W NVV+AYEPVWAIGTGKVATP
Sbjct: 121 GLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPA 180
Query: 210 QAQEVHAALRDWLK 223
QAQEVH LR WL
Sbjct: 181 QAQEVHDELRKWLH 194
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional.
Length = 250
Score = 236 bits (605), Expect = 1e-78
Identities = 90/196 (45%), Positives = 111/196 (56%), Gaps = 25/196 (12%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDA-KLEADVD--------------------RIEIA 92
K + GNWK N T LV +L A V+ I++
Sbjct: 2 KPIIAGNWKMNKTLAEAKALVEELKAALPDADGVEVAVAPPFTALASVKEALKGSNIKLG 61
Query: 93 AQN-SWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGL 151
AQN G AFTGEIS E LKD+G K+V++GHSERR GE D+ + KK AL GL
Sbjct: 62 AQNVHPEDSG-AFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGL 120
Query: 152 GVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPE 209
I C+GE L+EREAGKT +V +QL+A + + N+VIAYEPVWAIGTGK ATPE
Sbjct: 121 TPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATPE 180
Query: 210 QAQEVHAALRDWLKNM 225
QAQEVHA +R L +
Sbjct: 181 QAQEVHAFIRAVLAEL 196
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase.
Length = 242
Score = 235 bits (601), Expect = 3e-78
Identities = 90/204 (44%), Positives = 117/204 (57%), Gaps = 22/204 (10%)
Query: 55 FFVGGNWKCNGTKESITKLVSDLNDAKLE---ADV------------------DRIEIAA 93
+ GNWK N T +L L A L+ +V I++ A
Sbjct: 1 PIIIGNWKMNKTLAEALELAKALLAAALKNDGVEVVVAPPFTYLSPVKQALKGSNIKVGA 60
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
QN GAFTGE+S E LKD+G +V++GHSERR GE D+ + KK AL GL
Sbjct: 61 QNVSAEDSGAFTGEVSAEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKNGLTP 120
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIP-SWDNVVIAYEPVWAIGTGKVATPEQAQ 212
+ C+GE L+EREAGKT +V +QLKA + W N++IAYEPVWAIGTGKVATPEQAQ
Sbjct: 121 VLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEWKNLIIAYEPVWAIGTGKVATPEQAQ 180
Query: 213 EVHAALRDWLKNMSQQTLPLKHVL 236
EVHA +R +L +S++ +L
Sbjct: 181 EVHAFIRKYLAELSKEVAEEVRIL 204
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 216 bits (553), Expect = 9e-71
Identities = 87/195 (44%), Positives = 109/195 (55%), Gaps = 24/195 (12%)
Query: 54 KFFVGGNWKCNGT--------KESITKLVS--------------DLNDAKLEADVDRIEI 91
K V GNWK N T + +LV+ DL ++ I++
Sbjct: 3 KPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKV 62
Query: 92 AAQN-SWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 150
AQN G AFTGEIS E LKD+G K+V++GHSERR GE D+ I KK A G
Sbjct: 63 GAQNVDPEDSG-AFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAG 121
Query: 151 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 210
L I C+GE L+EREAGKT +V +QL A A+ N+VIAYEPVWAIGTGK A+P
Sbjct: 122 LTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPAD 181
Query: 211 AQEVHAALRDWLKNM 225
A+EVHA +R L +
Sbjct: 182 AEEVHAFIRAVLAEL 196
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 192 bits (490), Expect = 2e-57
Identities = 89/194 (45%), Positives = 114/194 (58%), Gaps = 22/194 (11%)
Query: 54 KFFVGGNWKCNGT----KESITKLVSDLNDAKLE----------------ADVDRIEIAA 93
K + GNWK N T KE + +L + DA+ E D I++ A
Sbjct: 398 KPIIAGNWKMNKTPAEAKEFVNELKKYVKDAQAEVVVCPPFTALPSVKEAVDGSNIKLGA 457
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
QN + + GA+TGEIS L +IG ++V++GHSERR GE D+ + KK AL GL
Sbjct: 458 QNVFYEEKGAYTGEISGPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTP 517
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWD--NVVIAYEPVWAIGTGKVATPEQA 211
I C+GE L ERE+G TFDV QLKA + + + VVIAYEPVWAIGTGKVATPEQA
Sbjct: 518 ILCVGETLDERESGITFDVVRLQLKAALNGLSAEQVKKVVIAYEPVWAIGTGKVATPEQA 577
Query: 212 QEVHAALRDWLKNM 225
QEVHA +R + +
Sbjct: 578 QEVHAFIRKLVAEL 591
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional.
Length = 260
Score = 148 bits (375), Expect = 5e-44
Identities = 79/205 (38%), Positives = 107/205 (52%), Gaps = 29/205 (14%)
Query: 54 KFFVGGNWKCNGTKESI--------TKLVSD-------------------LNDAKLEADV 86
+ V GNWK NG+ KL +D L K D
Sbjct: 5 RPMVAGNWKMNGSAALAQELFKKFAGKLQNDSAEVVLCPPSIYLESVRQLLEANKEALDG 64
Query: 87 DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYA 146
+ + AQN GA+TGE+S + LKD GC++V++GHSERR + GE + +K A A
Sbjct: 65 SLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAA 124
Query: 147 LSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAY--ADAIPSWDNVVIAYEPVWAIGTGK 204
GL I C+GE REA +TF+V ++L + ++DN +IAYEP+WA+GTGK
Sbjct: 125 QKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAVGTGK 184
Query: 205 VATPEQAQEVHAALRDWLKNMSQQT 229
ATPEQAQEVHA +R L +S
Sbjct: 185 SATPEQAQEVHAFIRKRLSEVSPFI 209
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 130 bits (329), Expect = 9e-38
Identities = 52/183 (28%), Positives = 71/183 (38%), Gaps = 41/183 (22%)
Query: 56 FVGGNWK-CNGTKESITKLVSDLN------------------DAKLEADVDRIEIAAQNS 96
V GNWK N ++ V+ + D + I + AQ+
Sbjct: 1 LVIGNWKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREVEIPVYAQHV 60
Query: 97 WVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIAC 156
GA TGEIS E LKDIG K ++ HSERR + + I KK A GL + C
Sbjct: 61 DAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLAD----IEKKIARLKELGLTSVVC 116
Query: 157 IGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHA 216
+ A A + V+A EP IGTG +P Q + VH
Sbjct: 117 T-------------NNVLTTAAAAA-----LEPDVVAVEPPELIGTGIPVSPAQPEVVHG 158
Query: 217 ALR 219
++R
Sbjct: 159 SVR 161
>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional.
Length = 237
Score = 130 bits (329), Expect = 2e-37
Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 23/171 (13%)
Query: 55 FFVGGNWKCNGTK---ESITKLVSD---LNDAKLE-----------ADVDR---IEIAAQ 94
F + NWK NG S K +S+ N+ L+ + V+ I++ AQ
Sbjct: 3 FLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECNPNIKLGAQ 62
Query: 95 NSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI 154
N + G G +TGEIS + LK+ GC +V+LGHSERR E D I KA A+ GL I
Sbjct: 63 NCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPI 122
Query: 155 ACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKV 205
C+GE L++RE G T DV +Q + +P +IAYEPVWAIG +
Sbjct: 123 ICVGETLEDRENGMTKDVLLEQCS---NCLPKHGEFIIAYEPVWAIGGSTI 170
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
Length = 253
Score = 123 bits (311), Expect = 1e-34
Identities = 72/194 (37%), Positives = 100/194 (51%), Gaps = 26/194 (13%)
Query: 59 GNWKCNGTKESITKLVSDLNDAKLEADVDRIEIAA----------------------QNS 96
GNWK NG SI +L S ++ + D R+ IA QN
Sbjct: 7 GNWKMNGNSTSIKELCSGISQVQY--DTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNI 64
Query: 97 WVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIAC 156
GA+TGEIS L+DIGC ++++GHSERR + E D+ + KK + + + C
Sbjct: 65 TFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVC 124
Query: 157 IGEQLQEREAGKTFDVCFQQLKAYAD--AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEV 214
IGE L +R++GK V QL + ++ VVIAYEPVWAIGTG VA+ EQ QE
Sbjct: 125 IGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQET 184
Query: 215 HAALRDWLKNMSQQ 228
H +R L + ++
Sbjct: 185 HQFIRSLLAKVDER 198
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
glucose/sucrose-specific transporter subunit IIB;
Provisional.
Length = 355
Score = 103 bits (258), Expect = 4e-26
Identities = 62/160 (38%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 69 SITKLVSDLNDAKLEADVDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSER 128
S L + A E +I+I AQN G FTGEIS LK++G + V++GHSER
Sbjct: 47 SYIALKDAVEAAASETGHPKIKIGAQNMNAKDKGQFTGEISPLMLKELGIELVMIGHSER 106
Query: 129 RHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKA--YADAIPS 186
RHV+ E DQ +K AL G + CIGE L+++ + +V QLK + +
Sbjct: 107 RHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQ 166
Query: 187 WDNVVIAYEPVWAIGTGKV-ATPEQAQEVHAALRDWLKNM 225
++ IAYEPVWAIG G + A+ E A E HA ++ L +
Sbjct: 167 LPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFEL 206
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional.
Length = 260
Score = 95.8 bits (238), Expect = 8e-24
Identities = 55/137 (40%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 89 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS 148
I I AQN G FTG+IS LK+IG + V++GHSERRH GE DQ K AL
Sbjct: 66 IIIGAQNMNPNDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALK 125
Query: 149 EGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKV- 205
+ C+GE L+++ G + ++ QLK I + IAYEPVWAIG +
Sbjct: 126 HDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQLAKLRIAYEPVWAIGEAGIP 185
Query: 206 ATPEQAQEVHAALRDWL 222
A+ + A E HA ++ L
Sbjct: 186 ASADYADEKHAVIKQCL 202
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
Length = 223
Score = 48.3 bits (116), Expect = 6e-07
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 22/125 (17%)
Query: 79 DAKLEADVDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQF 138
D + A+ I + AQ+ + G+ TG I E +KD G ++ HSERR + +
Sbjct: 47 DIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLAD---- 102
Query: 139 IGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVW 198
I A GL + C + + A A P + +A EP
Sbjct: 103 IEAVVERAKKLGLESVVC------------VNNP--ETSAAAAALGPDY----VAVEPPE 144
Query: 199 AIGTG 203
IGTG
Sbjct: 145 LIGTG 149
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine
methyltransferase. This family represents
5-methyltetrahydrofolate--homocysteine methyltransferase
(EC 2.1.1.13), one of at least three different enzymes
able to convert homocysteine to methionine by
transferring a methyl group on to the sulfur atom. It is
also called the vitamin B12(or cobalamine)-dependent
methionine synthase. Other methionine synthases include
5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase (MetE, EC 2.1.1.14, the
cobalamin-independent methionine synthase) and
betaine-homocysteine methyltransferase [Amino acid
biosynthesis, Aspartate family].
Length = 1178
Score = 32.8 bits (75), Expect = 0.16
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 133 GEDDQFIGKKAAYALSEGLGVIA-CIGEQLQEREAGKTFDVCFQQLKAYADAIPSW--DN 189
GE+ FI + A G V+ E+ Q R A + ++C +AY
Sbjct: 449 GEER-FI-ETAKLIKEYGAAVVVMAFDEEGQARTADRKIEIC---KRAYNILTEKVGFPP 503
Query: 190 VVIAYEP-VWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHVL 236
I ++P + I TG A A+R W+K + LP +
Sbjct: 504 EDIIFDPNILTIATGIEEHRRYAINFIEAIR-WIK----EELPDAKIS 546
>gnl|CDD|220470 pfam09920, DUF2150, Uncharacterized protein conserved in archaea
(DUF2150). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 190
Score = 30.4 bits (69), Expect = 0.60
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 42 RSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDR-IEIAAQ 94
++S V A++ ++ GG I +LV A+ E D+D + AQ
Sbjct: 94 QTSLVAVFAAAEEYLEGGFDP----DADIKELVKAAAKAEAEEDLDAALGYVAQ 143
>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a
glycogen binding domain, associated with the catalytic
domain of AMP-activated protein kinase beta subunit. E
or "early" set domains are associated with the
catalytic domain of AMP-activated protein kinase beta
subunit glycogen binding domain at the N-terminal end.
AMPK is a metabolic stress sensing protein that senses
AMP/ATP and has recently been found to act as a
glycogen sensor as well. The protein functions as an
alpha-beta-gamma heterotrimer. This N-terminal domain
is the glycogen binding domain of the beta subunit.
This domain is also a member of the CBM48 (Carbohydrate
Binding Module 48) family whose members include
pullulanase, maltooligosyl trehalose synthase, starch
branching enzyme, glycogen branching enzyme, glycogen
debranching enzyme, and isoamylase.
Length = 80
Score = 27.2 bits (61), Expect = 2.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 54 KFFVGGNWKCNGTKESIT 71
KF V G W + ++T
Sbjct: 51 KFIVDGEWVHDPDLPTVT 68
>gnl|CDD|213839 TIGR03629, arch_S13P, archaeal ribosomal protein S13P. This model
describes exclusively the archaeal ribosomal protein
S13P. It excludes the homologous eukaryotic 40S
ribosomal protein S18 and bacterial 30S ribosomal
protein S13 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 144
Score = 28.0 bits (63), Expect = 2.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 139 IGKKAAYALSEGLGV--IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSW 187
IG++ A A++ LGV A +G L + E K + ++ Y IPSW
Sbjct: 29 IGRRFARAIARKLGVDPNAKLGY-LDDEEIEKLEEA----VENYEYGIPSW 74
>gnl|CDD|119352 cd02873, GH18_IDGF, The IDGF's (imaginal disc growth factors) are a
family of growth factors identified in insects that
include at least five members, some of which are encoded
by genes in a tight cluster. The IDGF's have an
eight-stranded alpha/beta barrel fold and are related to
the glycosyl hydrolase family 18 (GH18) chitinases, but
they have an amino acid substitution known to abolish
chitinase catalytic activity. IDGFs may have evolved
from chitinases to gain new functions as growth factors,
interacting with cell surface glycoproteins involved in
growth-promoting processes.
Length = 413
Score = 28.4 bits (64), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 134 EDDQFIGKKAAYALSEGLGVIA 155
ED KA YA ++GLG +A
Sbjct: 364 EDPDTAANKAGYAKAKGLGGVA 385
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 28.4 bits (63), Expect = 3.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 194 YEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQT----LPLKHV 235
YEPV IG G T +A++ H+ LK++ QT LPL V
Sbjct: 2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTV 47
>gnl|CDD|182263 PRK10140, PRK10140, putative acetyltransferase YhhY; Provisional.
Length = 162
Score = 27.6 bits (61), Expect = 4.7
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 28 VNSHLRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD 87
V HL + +RPRRS + V WK G ++ + + ++ D L VD
Sbjct: 62 VVGHLTIDVQQRPRRSH-----VADFGICVDSRWKNRGVASALMREMIEMCDNWLR--VD 114
Query: 88 RIEI 91
RIE+
Sbjct: 115 RIEL 118
>gnl|CDD|234512 TIGR04228, isopep_sspB_C2, adhesin isopeptide-forming domain,
sspB-C2 type. This domain has a conserved Lys (position
3 in seed alignment) and Asn at 177 that form an
intramolecular isopeptide bond. The Asp (or Glu) at
position 59.
Length = 173
Score = 26.9 bits (60), Expect = 6.9
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 66 TKESITK---LVSDLNDAKLEADVDRIEIAAQNSWVGKGGAFTGEISV 110
+KE+I K V D ++ L D +I I N G TG ++
Sbjct: 41 SKEAIAKGFGYVDDYDEEALTVDDKKITITDSN-----GKDVTGLFTM 83
>gnl|CDD|216545 pfam01515, PTA_PTB, Phosphate acetyl/butaryl transferase. This
family contains both phosphate acetyltransferase and
phosphate butaryltransferase. These enzymes catalyze the
transfer of an acetyl or butaryl group to
orthophosphate.
Length = 319
Score = 27.3 bits (61), Expect = 7.7
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 28/103 (27%)
Query: 126 SERRHVI---GEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVC--------- 173
S ++ ++ GED++ + K A L EG+ IG +++ + +
Sbjct: 12 SAKKRIVFPEGEDERVL-KAAKELLEEGIADPILIGNEIEIKAKALGLGLDLDGIEIVDP 70
Query: 174 --FQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEV 214
+ + YAD + + K TPE A+E+
Sbjct: 71 ETSPRDEEYADEY-------------YELRKHKGMTPEIAREI 100
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 27.1 bits (60), Expect = 9.3
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 207 TPEQAQEVHAALRDWLKNMSQQTLPL 232
+ AQ++ L WL +++QT
Sbjct: 309 SAAAAQQIEQLLTQWLGALAEQTWAE 334
>gnl|CDD|221268 pfam11853, DUF3373, Protein of unknown function (DUF3373). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 472 to 574 amino acids in
length.
Length = 485
Score = 27.1 bits (60), Expect = 9.7
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 38 RRPRRSSSVVAMASSNKFFVGGNWKCNGTK--ESITKLVSDLN--DAKLEADVDRIEIAA 93
++ S V A+ + + + + E++ K +++L L+ VD+ E +
Sbjct: 2 KKLVSLSLVAALLALSLPAAAAAADIDLLQKIEALKKELAELKAQLKDLQKRVDKTEKKS 61
Query: 94 QNSWVGKGGAFTGEISVEQLKD 115
+ GG F + K
Sbjct: 62 AGDRLTFGGDFRFRVDSLNYKT 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.129 0.385
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,000,979
Number of extensions: 1112084
Number of successful extensions: 1152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 34
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)