RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026249
(241 letters)
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 313 bits (804), Expect = e-109
Identities = 100/215 (46%), Positives = 127/215 (59%), Gaps = 21/215 (9%)
Query: 30 SHLRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD-- 87
S+ S + KFFVGGNWK NG S+ +V+ LN + + VD
Sbjct: 2 SYYHHHHHHLESTSLYKAGLTR--KFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVV 59
Query: 88 -----------------RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRH 130
+ +AAQN + GAFTGEIS +KD+G +WV+LGHSERRH
Sbjct: 60 VAPPAPYLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRH 119
Query: 131 VIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV 190
V GE D I +K +AL G+ V+ CIGE+L+EREAG T DV F+QL+A D SW+N+
Sbjct: 120 VFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENI 179
Query: 191 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNM 225
VIAYEPVWAIGTGK A+ EQAQEVH +R +LK
Sbjct: 180 VIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEK 214
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the
ligand-free state, conformational heterogeneity,
TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1
PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1*
8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A*
1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Length = 248
Score = 312 bits (801), Expect = e-108
Identities = 112/195 (57%), Positives = 133/195 (68%), Gaps = 19/195 (9%)
Query: 50 ASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD-------------------RIE 90
A S KFFVGGNWK NG K+++ +L++ LN AK+ AD + +I
Sbjct: 1 APSRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIA 60
Query: 91 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 150
+AAQN + GAFTGEIS +KD G WVVLGHSERRHV GE D+ IG+K A+ALSEG
Sbjct: 61 VAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEG 120
Query: 151 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 210
LGVIACIGE+L EREAG T V F+Q K AD + W VV+AYEPVWAIGTGK ATP+Q
Sbjct: 121 LGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQ 180
Query: 211 AQEVHAALRDWLKNM 225
AQEVH LR WLK+
Sbjct: 181 AQEVHEKLRGWLKSN 195
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis,
glycolysis; 2.40A {Rhipicephalus microplus}
Length = 249
Score = 310 bits (798), Expect = e-108
Identities = 98/194 (50%), Positives = 128/194 (65%), Gaps = 19/194 (9%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD-------------------RIEI 91
++ +F VGGNWK +G+K SI + + L A L+ +V+ + +
Sbjct: 2 AARRFCVGGNWKMHGSKNSIRDICNTLKGASLDPNVEVIVACPAPYLDYCRSLLPPSVAL 61
Query: 92 AAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGL 151
AAQN + + GAFTGEIS +KD G +WV+LGHSERRHV EDD IG+K +AL GL
Sbjct: 62 AAQNCYKVEQGAFTGEISPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGL 121
Query: 152 GVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQA 211
VIACIGE L++REAG+T +VCF+Q+K A + W VVIAYEPVWAIGTGK ATP+QA
Sbjct: 122 NVIACIGELLEDREAGRTEEVCFRQIKHIASNVKDWSKVVIAYEPVWAIGTGKTATPDQA 181
Query: 212 QEVHAALRDWLKNM 225
QEVH+ +R+WL
Sbjct: 182 QEVHSKVRNWLSTN 195
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 310 bits (796), Expect = e-108
Identities = 99/191 (51%), Positives = 120/191 (62%), Gaps = 19/191 (9%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD-------------------RIEIAAQ 94
KF VGGNWK NG K+ I +++ L L D + I +AAQ
Sbjct: 4 KFVVGGNWKMNGDKKQINEIIGFLKSGPLNQDTEVVVGVPAIYLELVRTCVPASIGVAAQ 63
Query: 95 NSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI 154
N + GAFTGEIS +KD+G WV+LGHSERR + GE D+ I +K +AL GL VI
Sbjct: 64 NCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALESGLKVI 123
Query: 155 ACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEV 214
ACIGE L+EREAGKT +V F+Q KA A + W NVVIAYEPVWAIGTGK ATP+QAQ+V
Sbjct: 124 ACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKTATPQQAQDV 183
Query: 215 HAALRDWLKNM 225
H ALR W+
Sbjct: 184 HKALRQWICEN 194
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition
state analogue, glycolysis, pentose shunt,
gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A
{Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A
2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A
1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Length = 251
Score = 309 bits (793), Expect = e-107
Identities = 94/199 (47%), Positives = 117/199 (58%), Gaps = 23/199 (11%)
Query: 49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD--------------------R 88
M++ + NWKCNGT SI KLV N+ + DV +
Sbjct: 1 MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPK 60
Query: 89 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS 148
I+AQN+ K GAFTGE+S+ LKDIG WV+LGHSERR GE D+ + +K + A
Sbjct: 61 YVISAQNAIA-KSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACK 119
Query: 149 EGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVA 206
+G VIACIGE LQ+REA +T V Q A A + +W+ VV+AYEPVWAIGTGKVA
Sbjct: 120 QGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVA 179
Query: 207 TPEQAQEVHAALRDWLKNM 225
TPEQAQEVH LR W+
Sbjct: 180 TPEQAQEVHLLLRKWVSEN 198
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia
intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Length = 257
Score = 307 bits (789), Expect = e-106
Identities = 87/199 (43%), Positives = 118/199 (59%), Gaps = 24/199 (12%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD--------------------RIE 90
+ + F+GGN+KCNG+ + I V+ + K+ VD ++
Sbjct: 2 PARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLR 61
Query: 91 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 150
IAAQN ++ GA+TGE SVE L+D+G K V++GHSERR ++GE D+ KKA AL +G
Sbjct: 62 IAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKG 121
Query: 151 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP----SWDNVVIAYEPVWAIGTGKVA 206
+ VI C+GE L ER+A +T +V QL+A + W VVIAYEPVW+IGTG VA
Sbjct: 122 MTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVA 181
Query: 207 TPEQAQEVHAALRDWLKNM 225
TPEQA+EVH LR W
Sbjct: 182 TPEQAEEVHVGLRKWFVEK 200
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A
3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A
3pvf_A 3py2_A 2vfd_A 2vfe_A*
Length = 248
Score = 304 bits (782), Expect = e-106
Identities = 75/192 (39%), Positives = 109/192 (56%), Gaps = 20/192 (10%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVD-------------------RIEIAA 93
K+FV NWKCNGT ESI L + N+ + + +D +
Sbjct: 4 KYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGI 63
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
QN G++TGE+S E KD+ ++V++GH ERR E D+ + +K +L L
Sbjct: 64 QNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKA 123
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQE 213
+ C GE L++RE KT +V +Q+KA+ D I ++DNV++ YEP+WAIGTGK ATPEQAQ
Sbjct: 124 VVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQL 183
Query: 214 VHAALRDWLKNM 225
VH +R +K+
Sbjct: 184 VHKEIRKIVKDT 195
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas
vaginalis} PDB: 3qsr_A
Length = 255
Score = 302 bits (777), Expect = e-105
Identities = 86/194 (44%), Positives = 117/194 (60%), Gaps = 22/194 (11%)
Query: 54 KFFVGGNWKCN-GTKESITKLVSDLNDAKLEADVD-------------------RIEIAA 93
FFVGGNWK N T + KLV LN AK+E +V+ +++A
Sbjct: 6 TFFVGGNWKANPKTVQEAEKLVEMLNGAKVEGNVEVVVAAPFVFLPTLQQKLRKDWKVSA 65
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
+N + GAFTGE++V +K G +W +LGHSERR ++ EDD+F+ KA +AL G+ +
Sbjct: 66 ENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENGMKI 125
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQA 211
I C GE L EREAGK + Q++ AIP+ WD+VVIAYEP+WAIGTGKVA+ + A
Sbjct: 126 IYCCGEHLSEREAGKASEFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVASTQDA 185
Query: 212 QEVHAALRDWLKNM 225
QE+ +RD L
Sbjct: 186 QEMCKVIRDILAAK 199
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washingto niaid, I structural genomics;
1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 302 bits (776), Expect = e-104
Identities = 83/209 (39%), Positives = 112/209 (53%), Gaps = 26/209 (12%)
Query: 40 PRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD------------ 87
++ +M+ K+FVGGN+KCNGTKES+ L+ + ++ +
Sbjct: 13 EAQTQGPGSMSR--KYFVGGNFKCNGTKESLKTLIDSFKQVE-SSNSEVYVFPTSLHISL 69
Query: 88 -----------RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDD 136
+I +QN GAFTGE+S E LKD+ ++GHSERR E D
Sbjct: 70 VKEFFGNDHPGVFKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETD 129
Query: 137 QFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEP 196
Q + K L GL ++ CIGE L ERE GKT DV +QL + N+VIAYEP
Sbjct: 130 QIVNNKVKKGLENGLKIVLCIGESLSERETGKTNDVIQKQLTEALKDVSDLSNLVIAYEP 189
Query: 197 VWAIGTGKVATPEQAQEVHAALRDWLKNM 225
+WAIGTG VATP QAQE HA +R+++ M
Sbjct: 190 IWAIGTGVVATPGQAQEAHAFIREYVTRM 218
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome,
TIM-barrel, gluconeogenesis, lipid synthesis, atomic
resolution; 1.15A {Trypanosoma brucei brucei} PDB:
2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A
1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A
2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Length = 250
Score = 300 bits (771), Expect = e-104
Identities = 88/194 (45%), Positives = 115/194 (59%), Gaps = 23/194 (11%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD--------------------RIEIAA 93
+ NWKCNG+++S+++L+ N + DV + IAA
Sbjct: 5 QPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAA 64
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
QN+ K GAFTGE+S+ LKD G W+VLGHSERR GE ++ + K A A++ G V
Sbjct: 65 QNAIA-KSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMV 123
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQA 211
IACIGE LQERE+G+T V Q+ A A + W VVIAYE VWAIGTGKVATP+QA
Sbjct: 124 IACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQA 183
Query: 212 QEVHAALRDWLKNM 225
QE HA +R W+ +
Sbjct: 184 QEAHALIRSWVSSK 197
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability;
1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Length = 261
Score = 295 bits (757), Expect = e-101
Identities = 86/204 (42%), Positives = 115/204 (56%), Gaps = 30/204 (14%)
Query: 51 SSNKFFVGGNWKCNGTKESITKLVSDLND---AKLEADVD-------------------- 87
+ KF VGGNWKCNGT SI L + A+L V+
Sbjct: 2 GAGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGE 61
Query: 88 ----RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKA 143
I ++A+N+W K GA+TGE+ V L D +V+LGHSERR + E ++ + +K
Sbjct: 62 ANGANILVSAENAWT-KSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKV 120
Query: 144 AYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIG 201
A+ GL VIACIGE +R A +T +V QLKA +AI +W N+++AYEPVWAIG
Sbjct: 121 KVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIG 180
Query: 202 TGKVATPEQAQEVHAALRDWLKNM 225
TGK ATP+QAQEVH +R W+
Sbjct: 181 TGKTATPDQAQEVHQYIRKWMTEN 204
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A
{Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Length = 255
Score = 285 bits (732), Expect = 5e-98
Identities = 80/199 (40%), Positives = 104/199 (52%), Gaps = 23/199 (11%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLE-ADVD--------------------RIEIA 92
V GNWK NG++ + +LVS+L A I +
Sbjct: 3 HPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLG 62
Query: 93 AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLG 152
AQN + GAFTGE S LKDIG +++++GHSERR E D+ I KK A +GL
Sbjct: 63 AQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLT 122
Query: 153 VIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQ 210
+ CIGE E EAGKT +VC +Q+ A +++ VIAYEPVWAIGTGK ATP Q
Sbjct: 123 PVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQ 182
Query: 211 AQEVHAALRDWLKNMSQQT 229
AQ VH +RD + +
Sbjct: 183 AQAVHKFIRDHIAKVDANI 201
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome,
gluconeogenesis, lipid synthesis, monomeric mutant,
glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Length = 244
Score = 284 bits (728), Expect = 1e-97
Identities = 85/199 (42%), Positives = 110/199 (55%), Gaps = 30/199 (15%)
Query: 49 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD--------------------R 88
MAS + NWKCNG++ + L+ LN A + DV +
Sbjct: 1 MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPK 60
Query: 89 IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS 148
+IAAQN+ ++ LKD G WVVLGHSERR GE ++ + +K A A +
Sbjct: 61 FQIAAQNAG--------NADALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACA 112
Query: 149 EGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVA 206
G VI C+GE +EREAG+T V QL A A + +W VVIAYEPVWAIGTGKVA
Sbjct: 113 AGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVA 172
Query: 207 TPEQAQEVHAALRDWLKNM 225
TP+QAQEVH LR W+++
Sbjct: 173 TPQQAQEVHELLRRWVRSK 191
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 283 bits (726), Expect = 2e-97
Identities = 91/197 (46%), Positives = 128/197 (64%), Gaps = 20/197 (10%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD--------------------RIEIAA 93
FFVGGN+K NG+K+SI ++V LN A + +V+ ++ + A
Sbjct: 3 TFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGA 62
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
QN+++ GAFTGE SV+Q+KD+G K+V+LGHSERR EDD+FI K +AL +G+GV
Sbjct: 63 QNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQGVGV 122
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQE 213
I CIGE L+E++AGKT DV +QL A + + + NVV+AYEPV AIGTG ATPE AQ+
Sbjct: 123 ILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAATPEDAQD 182
Query: 214 VHAALRDWLKNMSQQTL 230
+HA++R +L +
Sbjct: 183 IHASIRKFLASKLGDKA 199
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 267 bits (686), Expect = 4e-91
Identities = 81/195 (41%), Positives = 108/195 (55%), Gaps = 23/195 (11%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADV---------------------DRIEIA 92
K + GNWK + T K VS L + + I++
Sbjct: 4 KLILAGNWKMHKTISEAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLG 63
Query: 93 AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLG 152
AQN + GAFTGEIS L++IG ++V++GHSERR + EDD+FI +K L +G+
Sbjct: 64 AQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMT 123
Query: 153 VIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQ 210
I C+GE L+ERE G TF V +Q++ + VVIAYEPVWAIGTG+VATP+Q
Sbjct: 124 PILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQ 183
Query: 211 AQEVHAALRDWLKNM 225
AQEVHA +R L M
Sbjct: 184 AQEVHAFIRKLLSEM 198
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 266 bits (683), Expect = 6e-91
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 22/188 (11%)
Query: 56 FVGGNWKCNGTKESITKLVSDLNDAKLEADVD-----------------RIEIAAQNSWV 98
N+K + +L D + QN++
Sbjct: 3 IAMANFKSAMPIFKSHAYLKELEKTLKPQHFDRVFVFPDFFGLLPNSFLHFTLGVQNAYP 62
Query: 99 GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 158
GAFTGEI+ + L+++ +++GHSERR ++ E F+ +K + S+ ++ CIG
Sbjct: 63 RDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIVYCIG 122
Query: 159 EQLQEREAG--KTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHA 216
E+L RE G + +QL+ ++ N+V+AYEP+WAIGT K A+ E H
Sbjct: 123 EELTTREKGFKAVKEFLSEQLENID---LNYPNLVVAYEPIWAIGTKKSASLEDIYLTHG 179
Query: 217 ALRDWLKN 224
L+ L
Sbjct: 180 FLKQILNQ 187
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A
{Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Length = 256
Score = 260 bits (668), Expect = 2e-88
Identities = 75/201 (37%), Positives = 105/201 (52%), Gaps = 25/201 (12%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDA-KLEADVD----------------------RIE 90
V GNWK NG+KE + L++ LN + VD I
Sbjct: 3 HPVVMGNWKLNGSKEMVVDLLNGLNAELEGVTGVDVAVAPPALFVDLAERTLTEAGSAII 62
Query: 91 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 150
+ AQN+ + GAFTG++S LK+ G +++GHSERR E D+F+ KK A+ G
Sbjct: 63 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENG 122
Query: 151 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIP--SWDNVVIAYEPVWAIGTGKVATP 208
L + CIGE + EAG+T VC +QL A + + + +IAYEP+WAIGTGK AT
Sbjct: 123 LTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATA 182
Query: 209 EQAQEVHAALRDWLKNMSQQT 229
E AQ +HA +R + S+
Sbjct: 183 EDAQRIHAQIRAHIAEKSEAV 203
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis,
pentose; HET: CIT; 1.90A {Staphylococcus aureus}
Length = 254
Score = 256 bits (657), Expect = 9e-87
Identities = 73/197 (37%), Positives = 101/197 (51%), Gaps = 25/197 (12%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD-----------------------RIE 90
+ GNWK N T + V+ L +V+ +E
Sbjct: 4 TPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLE 63
Query: 91 IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEG 150
I AQN++ GAFTGE S L D+G K+VV+GHSERR + E D+ I KKA G
Sbjct: 64 IGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHG 123
Query: 151 LGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATP 208
+ I C+GE +ERE+GK DV +Q+K + +VVIAYEP+WAIGTGK +T
Sbjct: 124 MTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTS 183
Query: 209 EQAQEVHAALRDWLKNM 225
E A E+ A +R + ++
Sbjct: 184 EDANEMCAFVRQTIADL 200
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW,
gluconeogenesis, glycolysis, pentose shunt; 1.60A
{Bartonella henselae}
Length = 275
Score = 249 bits (639), Expect = 1e-83
Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 37 SRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDLND--AKLEADVD------- 87
++ +M+ + + F+ GNWK NGT ES+ +L + + L +
Sbjct: 10 GTLEAQTQGPGSMSPNIRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPA 69
Query: 88 -------------RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGE 134
I + QN G +TG+IS LK+ G V++GHSERR V E
Sbjct: 70 TLLSRAFDILGGENILLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQE 129
Query: 135 DDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAY 194
D + K A GL + C+GE L+ER++ K DV +QL+ + +N++IAY
Sbjct: 130 SDAIVRAKVQAAWRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAY 189
Query: 195 EPVWAIGTGKVATPEQAQEVHAALRDWLKNM 225
EPVWA+GTG AT EVHA + + +
Sbjct: 190 EPVWAVGTGNTATSADVAEVHAFIHHKMHSR 220
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom
initiative, RSGI, structural genomics; 1.60A {Thermus
thermophilus}
Length = 250
Score = 242 bits (620), Expect = 5e-81
Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVD--------------------RIEIAA 93
+ V GNWK + T ++L + ++ A
Sbjct: 3 RVLVAGNWKMHKTPSEARVWFAELKRLLPPLQSEAAVLPAFPILPVAKEVLAETQVGYGA 62
Query: 94 QNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGV 153
Q+ K GA+TGE+S L D+GC++ ++GHSERR GE D + +KA L EG+
Sbjct: 63 QDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITP 122
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQA 211
I C+GE L+ RE G+ +QL+ + + + +VIAYEPVWAIGTGK ATPE A
Sbjct: 123 ILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDA 182
Query: 212 QEVHAALRDWLKNM 225
+ +H A+R L
Sbjct: 183 EAMHQAIRKALSER 196
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel, TPIA; 2.35A {Burkholderia thailandensis}
Length = 272
Score = 240 bits (615), Expect = 4e-80
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 28/222 (12%)
Query: 25 SQHVNSHLRLVSSRRPRRSSSVVAMASSNKFFVGGNWKCNGTKESITKLVSDL----NDA 80
+ H + H+ + ++ S M+ V GNWK +G L++++
Sbjct: 2 AHHHHHHMGTLEAQTQGPGS----MSKQRIKRVIGNWKMHGRLSGNQALLTEVAQGAQAV 57
Query: 81 KLEADV------------------DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVV 122
+ R+ +Q+ + GA+TGE++ + + G + +
Sbjct: 58 HDNVAIGVCVPFPYLAQAQAQLQGGRVSWGSQDVSAHEQGAYTGEVAAGMVAEFGAAYAI 117
Query: 123 LGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD 182
+GHSERR GE ++ + KA AL+ GL I C+GE L EREAG T V QL A
Sbjct: 118 VGHSERRAYHGESNETVAAKARRALAAGLTPIVCVGETLAEREAGTTEQVVGAQLDAVLA 177
Query: 183 AIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 222
+ +V+AYEPVWAIGTGK AT EQAQ+VHA LR L
Sbjct: 178 VLSPDEAARIVVAYEPVWAIGTGKSATAEQAQQVHAFLRGRL 219
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic
triose-phosphate, glycolysis; 2.40A {Geobacillus
stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Length = 252
Score = 238 bits (610), Expect = 1e-79
Identities = 71/195 (36%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDA---KLEADV------------------DRIEIA 92
K + GNWK NGT + V D+ E ++I
Sbjct: 2 KPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIG 61
Query: 93 AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLG 152
AQ GA+TGE+S LKD+G +V+LGHSERR + E D+ + KK A + GL
Sbjct: 62 AQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLI 121
Query: 153 VIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVATPEQ 210
I C GE L+EREAG+T V Q++ + VIAYEP+WAIGTGK +TPE
Sbjct: 122 PIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPED 181
Query: 211 AQEVHAALRDWLKNM 225
A V +R + +
Sbjct: 182 ANSVCGHIRSVVSRL 196
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium
tuberculosis} PDB: 3tao_A* 3gvg_A
Length = 267
Score = 237 bits (606), Expect = 8e-79
Identities = 75/199 (37%), Positives = 100/199 (50%), Gaps = 27/199 (13%)
Query: 54 KFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDRIEIA--------------------- 92
K + GNWK N LV + + + DR+++A
Sbjct: 4 KPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLR 63
Query: 93 ----AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALS 148
AQ+ GA+TG++S L +GC +VV+GHSERR EDD + KAA AL
Sbjct: 64 LTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALK 123
Query: 149 EGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPS--WDNVVIAYEPVWAIGTGKVA 206
GL I CIGE L REAG +QL+ + + +VVIAYEPVWAIGTG+VA
Sbjct: 124 HGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVA 183
Query: 207 TPEQAQEVHAALRDWLKNM 225
+ AQEV AA+R L ++
Sbjct: 184 SAADAQEVCAAIRKELASL 202
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 233 bits (596), Expect = 9e-77
Identities = 63/256 (24%), Positives = 105/256 (41%), Gaps = 51/256 (19%)
Query: 25 SQHVNSHLRLVSSRR--PRRSSSVVAMASSN---KFFVGGNWKCNGT----KESITKLVS 75
+ H + H+ + ++ P +S +A K + + K T + I L+
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMASALAGPRFPPLPKTLLIISLKMYFTPSRTIDYIQGLLE 61
Query: 76 DLNDAKLEADVDRIEIA-------------------------------------AQNSWV 98
ND + + R+ +A AQ+ +
Sbjct: 62 PRNDIIRQENRSRLLLALIPDFLTIYPCSEAIKEFESNLAAPQDADTPPPLLLGAQDCFW 121
Query: 99 GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIG 158
G +TGEIS L+D+ V LGH+ERR + GE DQ + +KAA A +GL + CIG
Sbjct: 122 DSLGPYTGEISPVCLRDMNVSIVELGHAERRAIFGETDQQVARKAAAAADQGLIPLVCIG 181
Query: 159 E-----QLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQE 213
E + G+ C Q++ +A+P V+ AYEPVWAIG + A +
Sbjct: 182 EVSTLGPIVSEAIGRAVGECEAQIRPVLEALPRDAPVIFAYEPVWAIGKPQPARVDHVGA 241
Query: 214 VHAALRDWLKNMSQQT 229
V + +R ++ + +
Sbjct: 242 VVSGIRSVIERIDRHR 257
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 198 bits (506), Expect = 3e-64
Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 41/185 (22%)
Query: 54 KFFVGGNWKCNGTK--ESITKLVSDLNDAKLEADVD-----------------RIEIAAQ 94
+ N+K G + +L A E V+ I + AQ
Sbjct: 3 LPILIINFKAYGEAAGKRAVELAKAAERAARELGVNIVVAPNHLELGLVSQSVDIPVYAQ 62
Query: 95 NSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVI 154
+ V GGA T +S+E +K+ G V+L HSE + + + + K A S GL V+
Sbjct: 63 GADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAK----AKSLGLDVV 118
Query: 155 ACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEV 214
C + A +A EP IGTG+ + + + +
Sbjct: 119 VCAPDPRTSLAAAA------------------LGPHAVAVEPPELIGTGRAVSRYKPEAI 160
Query: 215 HAALR 219
+
Sbjct: 161 VETVG 165
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 185 bits (471), Expect = 5e-59
Identities = 36/186 (19%), Positives = 59/186 (31%), Gaps = 41/186 (22%)
Query: 57 VGGNWKCNGTK--ESITKLVSDLNDAKLEADVD-----------------RIEIAAQNSW 97
+ N+K ++ E+ + I + AQ+
Sbjct: 3 IVINYKTYNESIGNRGLEIAKIAEKVSEESGITIGVAPQFVDLRMIVENVNIPVYAQHID 62
Query: 98 VGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACI 157
G+ TG I E +KD GCK ++ HSE+R ++ + + I K + GL I C
Sbjct: 63 NINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINK----CKNLGLETIVCT 118
Query: 158 GEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAA 217
+ IA EP IGTG + + V
Sbjct: 119 NNINTSKAVAA------------------LSPDCIAVEPPELIGTGIPVSKANPEVVEGT 160
Query: 218 LRDWLK 223
+R +
Sbjct: 161 VRAVKE 166
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 182 bits (464), Expect = 7e-58
Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 41/190 (21%)
Query: 49 MASSNKFFVGGNWKCNGTK--ESITKLVSDLNDAKLEADVD-----------------RI 89
MA + + N+K + ++ E V I
Sbjct: 1 MAKLKEPIIAINFKTYIEATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESVEI 60
Query: 90 EIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSE 149
+ AQ+ K G+ TG + E +K+ G +L HSE R ++ + + I + A
Sbjct: 61 PVFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRR----AEEV 116
Query: 150 GLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPE 209
GL + C + +A EP IGTG +
Sbjct: 117 GLMTMVCSNNPAVSAAVAA------------------LNPDYVAVEPPELIGTGIPVSKA 158
Query: 210 QAQEVHAALR 219
+ + + +
Sbjct: 159 KPEVITNTVE 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-05
Identities = 46/371 (12%), Positives = 92/371 (24%), Gaps = 162/371 (43%)
Query: 1 MASMISTNCAQFSGLRRSSPTQSYSQHVNSHLRL-----------VSSRRP--------- 40
+ S I T Q S T+ Y + + RL VS +P
Sbjct: 94 LMSPIKTEQRQ-----PSMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 41 --RRSSSVV--AMASSNK----------------FFVGGNW----KCNGTKESITKLVSD 76
R + +V+ + S K W CN + E++ +++
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQK 204
Query: 77 LN---DAKLEADVD-------RIEIAA----------------------QNSWVGKGGAF 104
L D + D RI QN+ AF
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN--AF 262
Query: 105 TGEISVEQLKDIGCKWVV----------LGHSERRHVIGEDDQ--FIGKKAAYALSEGLG 152
++ CK ++ L + H+ + + L + L
Sbjct: 263 ----------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 153 ----------------VIACIGEQLQEREA-------------GKTFDVCFQQL------ 177
++ I E +++ A + L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 178 KAYAD-AI-PSWDNVVI---AYEPVWAIGTGKVATPEQ-AQEVH---AALRDWLKNMSQQ 228
K + ++ P + I +W + ++H + +
Sbjct: 373 KMFDRLSVFP--PSAHIPTILLSLIW--FDVIKSDVMVVVNKLHKYSLVEKQP----KES 424
Query: 229 TLPLKHVLSME 239
T+ + + +E
Sbjct: 425 TISI-PSIYLE 434
Score = 34.8 bits (79), Expect = 0.025
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 113 LKDIGCKWV------VLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREA 166
+ + CK V +L E H+I D L + E++ ++
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLRL---FWTLLSKQEEMVQKFV 83
Query: 167 GKTFDVCFQQLK---AYADAIPSWDNVVIAY--EPVWAIGTGKVATPEQA--QEVHAALR 219
+ + ++ L PS + + ++ +V + + LR
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLR 141
Query: 220 DWLKNMSQQTLPLKHVL--SMEG 240
L + P K+VL + G
Sbjct: 142 QALLELR----PAKNVLIDGVLG 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-04
Identities = 34/184 (18%), Positives = 51/184 (27%), Gaps = 79/184 (42%)
Query: 104 FTGEISV-EQLKDIG---CKWVVLGHSERRHVIGE-------------DDQ----FI-GK 141
E + E LK G GHS +GE + F G
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHS-----LGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 142 KAAYALSEG------LGVIAC----IG-----EQLQ---EREAGKTFDVC----F----Q 175
A+ G+IA + E LQ ER +T + + Q
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 176 QLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKHV 235
Q V A G + + V L +++K + L+
Sbjct: 1852 Q-------------YVAA---------GDLRALDTVTNV---L-NFIKLQKIDIIELQKS 1885
Query: 236 LSME 239
LS+E
Sbjct: 1886 LSLE 1889
Score = 39.3 bits (91), Expect = 0.001
Identities = 38/264 (14%), Positives = 69/264 (26%), Gaps = 110/264 (41%)
Query: 43 SSSVVAMASSNK-------------FFVGGNWKCNGT-----------KESITK------ 72
++ +A S + FF+G +C ++S+
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 73 ---LVSDLNDAKLEADVD----------RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCK 119
+S+L +++ V+ ++EI+ N
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----AKNL--------------- 377
Query: 120 WVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQER----EAGKTFDVCF- 174
VV G + + Y L+ L Q R E F F
Sbjct: 378 -VVSGPPQ---------------SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 175 --------QQLKAYADAIPSW---DNVVIAYE----PVWAIGTGK---VATPEQAQE-VH 215
L +D I +NV + PV+ G V + ++ V
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 216 AALR---DWLKNMSQQTLPLKHVL 236
+R W + H+L
Sbjct: 482 CIIRLPVKWETTTQFKAT---HIL 502
Score = 29.6 bits (66), Expect = 0.96
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 32 LRLVSSRRPRRSSSVVAMA---SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEADVDR 88
L+ V R +R+ +V + N+ +V G ++ + + LN KL+ +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYV-----AAGDLRALDTVTNVLNFIKLQ----K 1876
Query: 89 IEIAAQNSWVGKGGAFTGEISVEQLKD 115
I+I +S+E+++
Sbjct: 1877 IDII----------ELQKSLSLEEVEG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.004
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 17/47 (36%)
Query: 163 EREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPE 209
E++A K LK YA D+ P AI AT E
Sbjct: 18 EKQALKKLQ---ASLKLYA---D--DSA-----PALAIK----ATME 47
Score = 34.5 bits (78), Expect = 0.012
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 67 KESITKLVSDLNDAKLEADVDR---IEIAAQ 94
K+++ KL + L KL AD D + I A
Sbjct: 19 KQALKKLQASL---KLYAD-DSAPALAIKAT 45
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; 1.50A {Vibrio fischeri ES114}
Length = 149
Score = 32.3 bits (73), Expect = 0.056
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 184 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQTLPLKH 234
I + V PVW TG + ++ LRD L N+S H
Sbjct: 95 IARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSNISGFKRLEHH 145
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 31.1 bits (71), Expect = 0.24
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 207 TPEQAQEVHAALRDWLKNMSQQTLPLKH 234
+P + AALR + PL
Sbjct: 5 SPLLQPGL-AALRRRAREAGVPLAPLPL 31
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 30.2 bits (68), Expect = 0.48
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 178 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNM 225
K YA I ++ G+G E+ +E D+L+N+
Sbjct: 167 KEYASIISGSRLEIVE-------GSGHPVYIEKPEEFVRITVDFLRNL 207
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; 2.60A {Pyrococcus
furiosus}
Length = 158
Score = 28.9 bits (65), Expect = 1.00
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 110 VEQLKDIGCKWVVLGHSERRHVIGED------DQFIGKKAAYALSEGL-----GVIACIG 158
+ ++IG L + VI ++ + I + ++ V +
Sbjct: 42 AKAWQEIGNDVTTLHVTFEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANMKNVSQRLK 101
Query: 159 EQLQEREAGKTFDVCF 174
E+++E + +D+ F
Sbjct: 102 EKVRELLESEDWDLVF 117
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 28.6 bits (64), Expect = 1.7
Identities = 18/94 (19%), Positives = 24/94 (25%), Gaps = 24/94 (25%)
Query: 131 VIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNV 190
+IGE D IG+ E Q K A IP V
Sbjct: 244 LIGEKDNTA-----------------IGKDAAPAELKARLGNYAQLGKDAARRIPQATLV 286
Query: 191 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKN 224
G + + H AL + L+
Sbjct: 287 EFP-------DLGHTPQIQAPERFHQALLEGLQT 313
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC,
Ca2+-dependent, catalytic TIM barrel, disulfide-LINK
loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB:
3h4w_A
Length = 339
Score = 28.3 bits (62), Expect = 2.1
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 152 GVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ- 210
A +L+ + + F C ++A+ DA P +++ E P +
Sbjct: 86 CEGAANASELRTKSRDQDFAGCLSDMRAWHDAHPGHRPILLKIEMKDGFNAKGGRGPAEF 145
Query: 211 AQEVHAALRDWL 222
+ L D +
Sbjct: 146 DALIRQKLGDAV 157
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Length = 137
Score = 27.3 bits (60), Expect = 2.6
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 184 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNMS 226
I + PVW T EQ V A L+ L+ ++
Sbjct: 95 IVRYQGDPAWPGPVWGKQPPVPYTEEQQASVKAKLQPLLEQLA 137
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
unknown function; NMR {Nostoc SP}
Length = 94
Score = 26.7 bits (59), Expect = 2.9
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 208 PEQ---AQEVHAALRDWLKNMSQQTLP--LKHVLSMEGQ 241
PEQ E+ L+ L+ +S LP L+ + S+ Q
Sbjct: 20 PEQFLTTIELLEKLKGELEKISFSDLPLELQKLDSLPAQ 58
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Length = 135
Score = 26.9 bits (59), Expect = 3.6
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 184 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 222
I + PVW G + E+ + A + + L
Sbjct: 97 IARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 135
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 27.4 bits (61), Expect = 4.1
Identities = 3/15 (20%), Positives = 9/15 (60%)
Query: 209 EQAQEVHAALRDWLK 223
E+ E+ + D+++
Sbjct: 312 ERPHEISKHIYDFIQ 326
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 27.0 bits (60), Expect = 4.4
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 74 VSDLNDAKLEADVDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIG 133
D D AD I A +G G AF S ++L DI + H+
Sbjct: 126 SLDYKDVIPMADAAGIIRYA----IGVGLAFQNRNSWKELNDIA------SKPSQEHIFK 175
Query: 134 EDD 136
+D
Sbjct: 176 VED 178
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 27.4 bits (61), Expect = 5.0
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 15/69 (21%)
Query: 98 VGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGE------DDQFIG--------KKA 143
G G + E + +I C ++ G ++ E + ++G KA
Sbjct: 267 AGPAGPYAKESGIWAYYEI-CTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNVKSFDIKA 325
Query: 144 AYALSEGLG 152
+ G
Sbjct: 326 QWLKHNKFG 334
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding
protein, retroviral integration, preintegration complex;
1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A
2ezx_A 2ezy_A 2ezz_A 2odg_A
Length = 89
Score = 25.6 bits (56), Expect = 5.4
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Query: 154 IACIGEQLQEREAGKTFDVCFQQLKAY------ADAIPSWDNVVIAYEPVWAIGTGKVAT 207
+A IGE L ++ + FD + L + D W A
Sbjct: 23 LAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCG------------AN 70
Query: 208 PEQAQEVHAALRDWLKN 224
+Q+++ LR+W
Sbjct: 71 AKQSRDCFGCLREWCDA 87
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Pyrococcus furiosus}
Length = 142
Score = 26.5 bits (59), Expect = 5.6
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 110 VEQLKDIGCKWVVLGHSERRHVIGEDD--QFIGKKAAYAL-------SEGL--GVIACIG 158
+ ++IG L + VI +++ + + + + V +
Sbjct: 37 AKAWQEIGNDVTTLHVTFEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANMKNVSQRLK 96
Query: 159 EQLQEREAGKTFDVCF 174
E+++E + +D+ F
Sbjct: 97 EKVRELLESEDWDLVF 112
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 27.2 bits (60), Expect = 5.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 209 EQAQEVHAALRDWLK 223
++ EV+ L WL
Sbjct: 529 DKPTEVNQILIKWLD 543
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 27.1 bits (60), Expect = 5.9
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 1/67 (1%)
Query: 87 DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIG-EDDQFIGKKAAY 145
++ G + V G + +D KAAY
Sbjct: 323 GKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKAAY 382
Query: 146 ALSEGLG 152
A + LG
Sbjct: 383 ARVKNLG 389
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 26.9 bits (60), Expect = 6.1
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 20/71 (28%)
Query: 98 VGKGGAFTG--------EI-------SVEQLKDIGCKWVVLGHSERRHVIG-EDDQFIGK 141
G G T EI + +L+D + V G +G +D + +
Sbjct: 264 PGAAGPITESSGFLAYYEICQFLKGAKITRLQDQQVPYAVKG----NQWVGYDDVKSMET 319
Query: 142 KAAYALSEGLG 152
K + + LG
Sbjct: 320 KVQFLKNLNLG 330
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea
jecorina}
Length = 340
Score = 26.9 bits (59), Expect = 6.1
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 177 LKAYADAIPSWDNVVIA---YEPVWAIGTGKVATPEQAQEVHAALRDWLKNMSQQ 228
L + S N++ Y GT T + L WL+ ++Q
Sbjct: 201 LSQVTNPDGSTTNLIFDVHKYLDSDNSGTHAECTTNNIDGAFSPLATWLRQNNRQ 255
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily,
PSI-2, NYSGXRC, STR genomics, protein structure
initiative; 1.75A {Bradyrhizobium japonicum}
Length = 149
Score = 25.7 bits (56), Expect = 8.8
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 184 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL 222
I PVW + + Q +ALR +
Sbjct: 100 IARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKI 138
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 26.2 bits (58), Expect = 9.4
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 209 EQAQEVHAALRDWLKNMSQQ 228
+Q + V +L ++
Sbjct: 252 DQREAVGFHFDLFLDELNSN 271
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
1bhq_1 1bho_1 1idn_1 3qa3_G
Length = 194
Score = 26.2 bits (58), Expect = 9.6
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 74 VSDLNDAKLEADVDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIG 133
D EAD + + +G G AF E S ++L I R HV
Sbjct: 122 PLGYEDVIPEADREGVIRYV----IGVGDAFRSEKSRQELNTIA------SKPPRDHVFQ 171
Query: 134 EDD 136
++
Sbjct: 172 VNN 174
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 10.0
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 205 VATPEQAQEVHAALRDW 221
+A ++ + ++R W
Sbjct: 74 IAQADRLTQEPESIRKW 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.385
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,620,748
Number of extensions: 214004
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 729
Number of HSP's successfully gapped: 61
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)