Query 026251
Match_columns 241
No_of_seqs 238 out of 943
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4548 Mitochondrial ribosoma 100.0 3.9E-45 8.5E-50 315.0 10.0 210 28-241 21-262 (263)
2 cd04661 MRP_L46 Mitochondrial 100.0 7.4E-33 1.6E-37 221.6 13.8 129 106-238 1-132 (132)
3 PRK15434 GDP-mannose mannosyl 99.7 6.5E-17 1.4E-21 133.9 12.7 107 117-228 28-138 (159)
4 cd03673 Ap6A_hydrolase Diadeno 99.7 9.7E-17 2.1E-21 125.9 12.6 113 116-239 14-130 (131)
5 PRK15472 nucleoside triphospha 99.7 4.3E-16 9.3E-21 125.2 12.0 119 117-236 14-136 (141)
6 PRK10546 pyrimidine (deoxy)nuc 99.7 1.8E-15 3.9E-20 120.1 13.3 111 117-239 14-126 (135)
7 PRK09438 nudB dihydroneopterin 99.6 8.6E-16 1.9E-20 124.4 10.3 114 118-239 19-143 (148)
8 cd04679 Nudix_Hydrolase_20 Mem 99.6 2.2E-15 4.9E-20 118.3 12.1 104 118-231 14-120 (125)
9 cd04680 Nudix_Hydrolase_21 Mem 99.6 2.5E-15 5.4E-20 116.4 11.5 103 118-235 12-117 (120)
10 cd04669 Nudix_Hydrolase_11 Mem 99.6 2.9E-15 6.3E-20 117.7 11.9 94 118-228 12-115 (121)
11 cd03428 Ap4A_hydrolase_human_l 99.6 2.3E-15 5.1E-20 118.5 10.9 110 116-237 15-127 (130)
12 cd03427 MTH1 MutT homolog-1 (M 99.6 3.4E-15 7.3E-20 118.8 11.3 112 118-239 12-125 (137)
13 cd03675 Nudix_Hydrolase_2 Cont 99.6 6E-15 1.3E-19 117.1 12.7 113 117-240 10-129 (134)
14 cd04673 Nudix_Hydrolase_15 Mem 99.6 5E-15 1.1E-19 114.9 12.0 104 118-228 11-115 (122)
15 cd04684 Nudix_Hydrolase_25 Con 99.6 6.4E-15 1.4E-19 115.1 12.4 104 118-228 11-118 (128)
16 cd03430 GDPMH GDP-mannose glyc 99.6 7.1E-15 1.5E-19 119.3 12.8 106 118-228 24-133 (144)
17 cd04696 Nudix_Hydrolase_37 Mem 99.6 6.6E-15 1.4E-19 115.7 12.0 101 119-228 15-115 (125)
18 PLN02325 nudix hydrolase 99.6 7E-15 1.5E-19 119.5 11.6 113 118-238 20-137 (144)
19 PF11788 MRP-L46: 39S mitochon 99.6 4E-16 8.7E-21 121.8 4.1 46 33-78 1-46 (111)
20 cd03671 Ap4A_hydrolase_plant_l 99.6 7.8E-15 1.7E-19 119.0 11.9 114 118-237 15-142 (147)
21 cd04687 Nudix_Hydrolase_28 Mem 99.6 1.3E-14 2.7E-19 114.6 12.0 104 117-228 11-122 (128)
22 cd04678 Nudix_Hydrolase_19 Mem 99.6 2.3E-14 5E-19 112.9 13.0 111 118-239 14-128 (129)
23 cd04681 Nudix_Hydrolase_22 Mem 99.6 1.1E-14 2.4E-19 114.8 11.1 113 118-238 13-129 (130)
24 cd04683 Nudix_Hydrolase_24 Mem 99.6 1.3E-14 2.8E-19 112.8 11.4 104 117-228 10-115 (120)
25 cd04695 Nudix_Hydrolase_36 Mem 99.6 1.1E-14 2.4E-19 115.7 11.0 112 117-238 13-127 (131)
26 TIGR00586 mutt mutator mutT pr 99.6 3.2E-14 7E-19 111.4 13.3 110 118-239 16-127 (128)
27 cd04672 Nudix_Hydrolase_14 Mem 99.6 2.6E-14 5.7E-19 112.1 11.9 103 118-230 13-116 (123)
28 PRK00714 RNA pyrophosphohydrol 99.6 2.2E-14 4.8E-19 118.0 11.9 116 118-239 20-148 (156)
29 cd04689 Nudix_Hydrolase_30 Mem 99.6 2.6E-14 5.5E-19 112.2 11.6 100 117-227 11-114 (125)
30 cd04700 DR1025_like DR1025 fro 99.6 2.5E-14 5.3E-19 115.7 11.6 99 119-228 26-126 (142)
31 cd04691 Nudix_Hydrolase_32 Mem 99.6 2.3E-14 4.9E-19 112.0 11.0 101 118-230 11-111 (117)
32 cd04664 Nudix_Hydrolase_7 Memb 99.6 1.8E-14 3.9E-19 113.7 10.4 104 116-228 13-119 (129)
33 cd04688 Nudix_Hydrolase_29 Mem 99.6 3.1E-14 6.7E-19 111.9 11.7 100 118-228 12-119 (126)
34 PRK10776 nucleoside triphospha 99.6 7E-14 1.5E-18 109.1 13.4 109 118-238 16-126 (129)
35 cd04666 Nudix_Hydrolase_9 Memb 99.6 3.7E-14 7.9E-19 112.2 11.9 102 117-228 14-116 (122)
36 cd04682 Nudix_Hydrolase_23 Mem 99.6 3.4E-14 7.4E-19 111.3 11.3 103 117-228 11-115 (122)
37 cd03674 Nudix_Hydrolase_1 Memb 99.6 6.9E-14 1.5E-18 112.3 12.8 116 118-239 15-137 (138)
38 cd04671 Nudix_Hydrolase_13 Mem 99.6 3.5E-14 7.6E-19 112.3 10.9 100 117-231 11-115 (123)
39 cd03425 MutT_pyrophosphohydrol 99.6 1.1E-13 2.5E-18 106.5 13.3 107 118-236 13-121 (124)
40 cd03672 Dcp2p mRNA decapping e 99.5 1.5E-14 3.2E-19 117.8 8.2 95 118-228 14-112 (145)
41 cd03429 NADH_pyrophosphatase N 99.5 4.1E-14 8.8E-19 112.8 10.5 95 118-227 12-107 (131)
42 cd04676 Nudix_Hydrolase_17 Mem 99.5 9.5E-14 2.1E-18 108.1 11.8 101 118-228 14-118 (129)
43 cd04511 Nudix_Hydrolase_4 Memb 99.5 1.2E-13 2.6E-18 109.6 11.7 94 118-225 24-117 (130)
44 cd04667 Nudix_Hydrolase_10 Mem 99.5 1.1E-13 2.4E-18 106.8 11.0 94 117-230 10-105 (112)
45 PF00293 NUDIX: NUDIX domain; 99.5 7.7E-14 1.7E-18 109.1 9.8 114 119-239 15-133 (134)
46 cd04693 Nudix_Hydrolase_34 Mem 99.5 6.9E-14 1.5E-18 110.2 9.2 101 118-228 12-114 (127)
47 cd04670 Nudix_Hydrolase_12 Mem 99.5 3.9E-13 8.5E-18 105.7 12.6 98 118-228 14-114 (127)
48 cd04690 Nudix_Hydrolase_31 Mem 99.5 2.2E-13 4.8E-18 105.5 10.9 100 118-228 12-111 (118)
49 cd04697 Nudix_Hydrolase_38 Mem 99.5 3E-13 6.4E-18 106.9 11.1 100 118-228 12-113 (126)
50 cd03426 CoAse Coenzyme A pyrop 99.5 2.3E-13 5E-18 111.8 10.8 102 117-228 15-119 (157)
51 cd04677 Nudix_Hydrolase_18 Mem 99.5 2.4E-13 5.2E-18 107.1 10.4 100 119-228 20-123 (132)
52 COG1051 ADP-ribose pyrophospha 99.5 2.9E-13 6.4E-18 110.4 10.8 100 119-228 22-123 (145)
53 PRK05379 bifunctional nicotina 99.5 5.2E-13 1.1E-17 122.9 13.2 119 117-239 213-338 (340)
54 cd04699 Nudix_Hydrolase_39 Mem 99.5 2.7E-13 5.8E-18 106.0 9.7 103 118-228 13-115 (129)
55 cd04692 Nudix_Hydrolase_33 Mem 99.5 4.1E-13 8.8E-18 108.4 10.1 108 118-228 17-128 (144)
56 cd03424 ADPRase_NUDT5 ADP-ribo 99.4 8.4E-13 1.8E-17 105.0 10.1 99 118-228 14-116 (137)
57 cd04686 Nudix_Hydrolase_27 Mem 99.4 1.3E-12 2.8E-17 104.1 10.9 102 117-228 10-120 (131)
58 PRK00241 nudC NADH pyrophospha 99.4 1.2E-12 2.5E-17 116.3 11.7 105 118-238 143-248 (256)
59 cd04694 Nudix_Hydrolase_35 Mem 99.4 1.7E-12 3.7E-17 105.5 11.3 111 117-228 12-132 (143)
60 cd02885 IPP_Isomerase Isopente 99.4 2E-12 4.4E-17 107.0 9.7 106 119-228 43-149 (165)
61 PRK15393 NUDIX hydrolase YfcD; 99.4 5.6E-12 1.2E-16 106.1 12.1 99 118-227 49-149 (180)
62 cd02883 Nudix_Hydrolase Nudix 99.4 5.3E-12 1.2E-16 96.2 10.9 100 118-228 12-113 (123)
63 PRK08999 hypothetical protein; 99.4 1.1E-11 2.4E-16 112.1 13.4 109 118-238 17-127 (312)
64 cd04685 Nudix_Hydrolase_26 Mem 99.3 1.1E-11 2.4E-16 99.5 10.6 102 118-227 12-123 (133)
65 cd04662 Nudix_Hydrolase_5 Memb 99.3 3.3E-11 7.1E-16 96.2 11.4 100 118-220 15-125 (126)
66 PRK03759 isopentenyl-diphospha 99.3 2E-11 4.4E-16 102.9 10.0 106 118-228 46-153 (184)
67 PRK11762 nudE adenosine nucleo 99.3 3.1E-11 6.8E-16 101.9 11.1 101 117-228 58-160 (185)
68 TIGR02150 IPP_isom_1 isopenten 99.2 3E-11 6.6E-16 99.5 9.0 103 118-228 39-143 (158)
69 cd04674 Nudix_Hydrolase_16 Mem 99.2 1.5E-10 3.3E-15 91.4 10.7 92 120-223 17-111 (118)
70 cd04665 Nudix_Hydrolase_8 Memb 99.2 1.3E-10 2.8E-15 91.7 10.2 93 117-225 10-103 (118)
71 cd03670 ADPRase_NUDT9 ADP-ribo 99.2 2.3E-10 5.1E-15 97.0 9.9 143 91-239 19-183 (186)
72 cd03676 Nudix_hydrolase_3 Memb 99.1 1.9E-10 4.1E-15 96.4 9.0 108 118-228 48-159 (180)
73 TIGR02705 nudix_YtkD nucleosid 99.1 4.8E-10 1E-14 92.6 11.2 92 119-228 36-128 (156)
74 cd04663 Nudix_Hydrolase_6 Memb 99.1 4.8E-10 1E-14 89.6 9.3 42 119-167 15-56 (126)
75 TIGR00052 nudix-type nucleosid 99.1 4.3E-10 9.4E-15 95.3 8.8 104 116-228 55-166 (185)
76 PRK10707 putative NUDIX hydrol 99.0 3.6E-09 7.7E-14 90.1 12.0 100 119-228 45-147 (190)
77 cd03431 DNA_Glycosylase_C DNA 99.0 5.3E-09 1.1E-13 80.2 11.4 95 118-230 14-109 (118)
78 PRK10729 nudF ADP-ribose pyrop 99.0 7.5E-09 1.6E-13 88.9 11.7 102 118-228 62-172 (202)
79 PLN02709 nudix hydrolase 98.9 1.7E-08 3.7E-13 87.8 11.0 98 119-227 52-155 (222)
80 COG0494 MutT NTP pyrophosphohy 98.8 3.2E-08 7E-13 76.5 9.9 104 118-228 24-135 (161)
81 KOG2839 Diadenosine and diphos 98.8 1.6E-08 3.4E-13 81.8 6.9 99 119-228 25-126 (145)
82 PRK15009 GDP-mannose pyrophosp 98.6 3.6E-07 7.9E-12 77.8 10.5 102 117-228 57-167 (191)
83 PLN02552 isopentenyl-diphospha 98.5 1.2E-06 2.7E-11 77.4 12.1 108 119-228 69-204 (247)
84 COG2816 NPY1 NTP pyrophosphohy 98.5 9.2E-08 2E-12 85.4 4.1 94 120-229 157-252 (279)
85 PLN03143 nudix hydrolase; Prov 98.4 1.6E-06 3.4E-11 78.5 10.1 105 118-228 143-266 (291)
86 KOG3084 NADH pyrophosphatase I 98.4 4.8E-07 1E-11 81.6 6.0 97 118-228 200-299 (345)
87 PLN02791 Nudix hydrolase homol 98.4 2.5E-06 5.3E-11 85.9 10.7 108 118-228 45-159 (770)
88 PF14815 NUDIX_4: NUDIX domain 98.3 2.4E-06 5.1E-11 66.1 8.2 100 116-230 7-107 (114)
89 KOG0648 Predicted NUDIX hydrol 97.6 3.6E-05 7.9E-10 69.3 2.3 103 118-228 127-232 (295)
90 COG4119 Predicted NTP pyrophos 97.5 0.00038 8.2E-09 55.5 6.5 115 111-238 10-147 (161)
91 KOG4195 Transient receptor pot 97.0 0.0008 1.7E-08 58.3 3.8 39 119-163 140-178 (275)
92 KOG3041 Nucleoside diphosphate 97.0 0.0019 4.1E-08 55.1 5.9 74 92-169 59-137 (225)
93 COG1443 Idi Isopentenyldiphosp 96.9 0.0036 7.9E-08 52.5 6.9 117 106-228 27-154 (185)
94 PLN02839 nudix hydrolase 96.6 0.0046 1E-07 57.6 5.9 94 133-228 232-328 (372)
95 KOG3069 Peroxisomal NUDIX hydr 96.3 0.012 2.5E-07 51.7 6.7 98 120-228 60-164 (246)
96 KOG2937 Decapping enzyme compl 95.0 0.0093 2E-07 54.5 0.9 108 95-227 81-192 (348)
97 PF13869 NUDIX_2: Nucleotide h 94.0 0.47 1E-05 40.4 8.9 49 119-174 59-110 (188)
98 PRK10880 adenine DNA glycosyla 93.5 0.19 4.2E-06 46.8 6.4 95 116-230 240-335 (350)
99 KOG0142 Isopentenyl pyrophosph 93.2 0.2 4.4E-06 43.0 5.5 79 147-228 102-184 (225)
100 KOG1689 mRNA cleavage factor I 83.3 1.8 3.9E-05 36.4 4.1 30 134-163 93-122 (221)
101 PRK13910 DNA glycosylase MutY; 81.1 4.6 0.0001 36.7 6.3 37 193-236 241-279 (289)
102 COG4112 Predicted phosphoester 67.2 16 0.00036 30.6 5.6 68 149-227 112-187 (203)
103 KOG4432 Uncharacterized NUDIX 62.7 12 0.00026 34.4 4.3 61 136-203 80-140 (405)
104 COG1194 MutY A/G-specific DNA 53.7 11 0.00023 35.2 2.6 30 115-146 244-273 (342)
105 PF13358 DDE_3: DDE superfamil 45.5 24 0.00052 26.8 3.1 26 37-62 106-131 (146)
106 TIGR01084 mutY A/G-specific ad 45.5 28 0.0006 31.4 3.8 25 117-143 238-262 (275)
107 PF14443 DBC1: DBC1 44.1 1.1E+02 0.0024 24.4 6.6 36 133-168 22-60 (126)
108 KOG2937 Decapping enzyme compl 33.4 10 0.00022 35.1 -0.9 43 133-175 262-304 (348)
109 PF14044 NETI: NETI protein 33.4 33 0.00071 23.6 1.8 19 142-161 2-20 (57)
110 COG0828 RpsU Ribosomal protein 27.2 46 0.00099 23.7 1.8 18 139-156 1-18 (67)
111 KOG2457 A/G-specific adenine D 20.7 55 0.0012 31.3 1.5 46 117-164 386-434 (555)
No 1
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-45 Score=314.96 Aligned_cols=210 Identities=38% Similarity=0.609 Sum_probs=169.0
Q ss_pred ccCCccceeeEEEeeeccccCCCCCHHHHHHHHHHHHHHHH-----------------------HH--hcCCcccccccC
Q 026251 28 FSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQ-----------------------YR--RRYPDEFLDKSN 82 (241)
Q Consensus 28 ~~~~~~~i~~av~leR~Pvi~~~~~p~E~~f~~~~~~~~~~-----------------------~~--~~~~~~~~~~~~ 82 (241)
.|+.+|+|+|+|+|+|+|||+++||++|+.|+.++.+..++ +. ...+|++.....
T Consensus 21 ass~p~~~~~gvll~R~Pvv~~~~se~EK~~~~ll~e~e~e~sl~~dhel~~~qe~~~~~~q~~~~~e~~~eDe~~~i~~ 100 (263)
T KOG4548|consen 21 ASSQPWKIFAGVLLSRLPVVAPPLSELEKRFYSLLMELEQEKSLKPDHELKAFQEEKEKAWQAQLRKEVDEEDEFIGITA 100 (263)
T ss_pred cCCCchhhhHHhhhhhcccccCCCCHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHH
Confidence 45566999999999999999999999999999997443321 11 223444443332
Q ss_pred cCCCCcc---cCCcCCCCCCCcccccCCCcchhhccCCcEEEEEEccCCCCCCCCCceecCcccc-CCCCCHHHHHHHHH
Q 026251 83 SRGKGDY---QMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVY-ESEESLRKCAECAL 158 (241)
Q Consensus 83 ~~~~~d~---~~~~~p~~r~T~aD~~~d~~Sl~R~l~~~L~LLVkr~~~g~~~~~~~W~FP~Gkv-e~gEtl~~aAeRel 158 (241)
...++++ ..+|+-..|+||||.+||++||+|+||++|||||+++ .| ..+.|.||++.+ +.|+||+.+|+|+|
T Consensus 101 ~~~kd~~~~~~~~~~~~~RiTEaD~kNd~kSl~R~Ldr~LyLLV~~k-~g---~~s~w~fP~~~~s~~~~~lr~~ae~~L 176 (263)
T KOG4548|consen 101 NDRKDMWKKDLLDFDLPFRITEADPKNDRKSLERELDRKLYLLVKRK-FG---KSSVWIFPNRQFSSSEKTLRGHAERDL 176 (263)
T ss_pred HHHHHHHHHHhhcccccccccCCCcccchhHHHHHhcceEEEEEeec-cC---ccceeeCCCcccCCccchHHHHHHHHH
Confidence 2223333 3344444499999999999999999999999999965 34 678999999999 99999999999999
Q ss_pred HHHhCCCeEEEEEcceeeEEEEecCCCCCCC--CCceEEEEEEEEEeCCcccccCcccceEeecHHhhcccC-cchHHHH
Q 026251 159 QSVLGDLSHTYFVGNAPMGHMVMQPAEKMPD--VPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PESAEFL 235 (241)
Q Consensus 159 ~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~--~~g~kvfffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~~~~~v 235 (241)
+..+|.++.+||+||+||||+.|++|..+.. .+|.++|||+|.+++|+..-.....||.|||++||.+++ +.++..+
T Consensus 177 k~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k~~lv~~~~~kn~n~edfvWvTkdel~e~l~~~~~~~v 256 (263)
T KOG4548|consen 177 KVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFKASLVANSNQKNQNKEDFVWVTKDELGEKLPKFAKAQV 256 (263)
T ss_pred HHHhcchhhhheeccCccccccccCcccccccccccceeEEeeeeeccccchhcccccceEEechHHHhhhcchHHHHhh
Confidence 9999999999999999999999999877653 368999999999999976544467899999999999999 6666777
Q ss_pred HhhhcC
Q 026251 236 NKMIIS 241 (241)
Q Consensus 236 ~~~l~~ 241 (241)
+.||.|
T Consensus 257 K~ilsD 262 (263)
T KOG4548|consen 257 KHILSD 262 (263)
T ss_pred hhhccC
Confidence 766654
No 2
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=100.00 E-value=7.4e-33 Score=221.60 Aligned_cols=129 Identities=33% Similarity=0.541 Sum_probs=114.9
Q ss_pred CCCcchhhccCCcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCC
Q 026251 106 NDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAE 185 (241)
Q Consensus 106 ~d~~Sl~R~l~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~ 185 (241)
||+|||+|+|++.+|||||++ .+..|.|.||+|++++|||+++||.|||.||+|+.+++++++++|++++.|.++.
T Consensus 1 ~~~~~~~r~~~~~~~Llvk~~----~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~ 76 (132)
T cd04661 1 NDRKSLDRKLDDTLVLLVQQK----VGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPK 76 (132)
T ss_pred CCccchhhcccCcEEEEEEee----cCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCc
Confidence 799999999999999999986 2246899999999999999999999999999999999999999999999988764
Q ss_pred CCC--CCCceEEEEEEEEEeCCcccccCcccceEeecHHhhcccC-cchHHHHHhh
Q 026251 186 KMP--DVPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PESAEFLNKM 238 (241)
Q Consensus 186 ~~~--~~~g~kvfffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~~~~~v~~~ 238 (241)
... +.+|.++|||+|++++|++.+..++.+++|++++||.+++ +.++.+|++|
T Consensus 77 ~~~~~~~~~~~~~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l~~~~~~~~~~~ 132 (132)
T cd04661 77 AVRNEGIVGAKVFFFKARYMSGQFELSQNQVDFKWLAKEELQKYLNPPYLQSVKKF 132 (132)
T ss_pred ccccccCcccEEEEEEEEEecCccccCCCcceeEecCHHHHHhhcCHHHHHHHhcC
Confidence 321 2357899999999999988766789999999999999999 7889999887
No 3
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.72 E-value=6.5e-17 Score=133.92 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=78.1
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCC--C-CCce
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMP--D-VPSY 193 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~--~-~~g~ 193 (241)
+..|||+||.. ++..|.|+||||+++.|||+.+||.||++||+|+++.+.. ..+++++.+.+..... + ....
T Consensus 28 ~g~VLL~kR~~---~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 102 (159)
T PRK15434 28 RGEFLLGKRTN---RPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITA--GQFYGVWQHFYDDNFSGTDFTTHY 102 (159)
T ss_pred CCEEEEEEccC---CCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCcccccc--ceEEEEEEeecccccCCCccceEE
Confidence 35799999862 2456899999999999999999999999999999865321 1223333322221100 0 1246
Q ss_pred EEEEEEEEEeCCccccc-CcccceEeecHHhhcccC
Q 026251 194 KQFFFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 194 kvfffka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
.+++|.|.+..|.+.+. .++.+++|++.+|+..+.
T Consensus 103 i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 103 VVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASD 138 (159)
T ss_pred EEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhcc
Confidence 78899999988887654 379999999999998864
No 4
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.72 E-value=9.7e-17 Score=125.91 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=86.9
Q ss_pred CCcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEE
Q 026251 116 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 195 (241)
Q Consensus 116 ~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 195 (241)
++..+||+++.. .+.|.||+|.++.|||+.+||.||+.||+|+.+... ..++.+.|.++... ......+
T Consensus 14 ~~~~vLl~~~~~------~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~~-~~~~~~~ 82 (131)
T cd03673 14 GGIEVLLIHRPR------GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVG----DPLGTIRYWFSSSG-KRVHKTV 82 (131)
T ss_pred CCeEEEEEEcCC------CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEec----ceEEEEEEeccCCC-CCcceEE
Confidence 457899999862 378999999999999999999999999999977642 23444445443221 1234688
Q ss_pred EEEEEEEeCCccc--ccCcccceEeecHHhhcccC--cchHHHHHhhh
Q 026251 196 FFFKSQVIASNKF--TIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 239 (241)
Q Consensus 196 fffka~~~~G~~~--~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~~l 239 (241)
+||.+....+... ..+++.++.|++.+|+.+++ |.+..++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 83 HWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred EEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 9999998877765 34588899999999999988 67777777765
No 5
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.68 E-value=4.3e-16 Score=125.22 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=76.3
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcc-eeeEEE-EecCCCCCCCCCceE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGN-APMGHM-VMQPAEKMPDVPSYK 194 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~-~P~g~~-~y~~~~~~~~~~g~k 194 (241)
+..+||+||.. ......|.|.||||+++.|||+.+||.||++||+|+.+.+..+.. ...+.+ .+.|+....+.....
T Consensus 14 ~~~vLl~~R~~-~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PRK15472 14 DGAYLLCKMAD-DRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMI 92 (141)
T ss_pred CCEEEEEEecc-cCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEE
Confidence 35799999752 112356899999999999999999999999999999875432210 000000 111222111000011
Q ss_pred EEEEEEEEeCCcccccCcccceEeecHHhhcccC--cchHHHHH
Q 026251 195 QFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLN 236 (241)
Q Consensus 195 vfffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~ 236 (241)
.++|.|...++.+.+.+|+.+++|++.+||.++. |++...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~ 136 (141)
T PRK15472 93 YLIFDCVSANRDVKINEEFQDYAWVKPEDLVHYDLNVATRKTLR 136 (141)
T ss_pred EEEEEeecCCCcccCChhhheEEEccHHHhccccccHHHHHHHH
Confidence 1345676666666666689999999999999987 56555543
No 6
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.66 E-value=1.8e-15 Score=120.05 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=83.1
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+||+||+..| ...|.|.||||+++.|||..+||.||+.||+|+.+.+. ..++.+.|.++.. ...++
T Consensus 14 ~~~vLL~~R~~~~--~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~-----~~~~~ 82 (135)
T PRK10546 14 DGKILLAQRPAHS--DQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG----EYVASHQREVSGR-----RIHLH 82 (135)
T ss_pred CCEEEEEEccCCC--CCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc----eeEEEEEEecCCc-----EEEEE
Confidence 3569999986311 34689999999999999999999999999999987642 2244555544322 24677
Q ss_pred EEEEEEeCCcccccCcccceEeecHHhhcccC--cchHHHHHhhh
Q 026251 197 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 239 (241)
Q Consensus 197 ffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~~l 239 (241)
+|.+....|.+.. .++.++.|++.+|+.++. +.+..+++.++
T Consensus 83 ~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 126 (135)
T PRK10546 83 AWHVPDFHGELQA-HEHQALVWCTPEEALRYPLAPADIPLLEAFM 126 (135)
T ss_pred EEEEEEecCcccc-cccceeEEcCHHHcccCCCCcCcHHHHHHHH
Confidence 8888877676543 367899999999999886 67777777665
No 7
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.65 E-value=8.6e-16 Score=124.40 Aligned_cols=114 Identities=12% Similarity=0.102 Sum_probs=78.3
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEE---EEcceeeEEE------EecCCCCCC
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTY---FVGNAPMGHM------VMQPAEKMP 188 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~---~vg~~P~g~~------~y~~~~~~~ 188 (241)
..+||++|.. ..+.|.||+|+++.|||+.+||.|||+||||+.+.+. +++......+ .+.++..
T Consensus 19 ~~vLl~~r~~-----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (148)
T PRK09438 19 LGVLMLQRAD-----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWRHRYAPG-- 91 (148)
T ss_pred CeEEEEEecC-----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhhhhccccc--
Confidence 4589998751 3578999999999999999999999999999987321 1111000001 1111111
Q ss_pred CCCceEEEEEEEEEeCCcccccCcccceEeecHHhhcccC--cchHHHHHhhh
Q 026251 189 DVPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 239 (241)
Q Consensus 189 ~~~g~kvfffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~~l 239 (241)
..+...++|.|....+.....+++.++.|++.+|+.+.. |.....++.++
T Consensus 92 -~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~ 143 (148)
T PRK09438 92 -VTRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQLV 143 (148)
T ss_pred -cCCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHhcChhHHHHHHHHH
Confidence 123577888898765532223489999999999999987 77777777664
No 8
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2.2e-15 Score=118.27 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=76.9
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ....+.|.||||+++.|||+.+||.||++||+|+++... .+++...+.+... ..+...++
T Consensus 14 ~~vLL~~r~~---~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~---~~~~~~~~ 83 (125)
T cd04679 14 GKLLLVKRLR---APEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST----RLLCVVDHIIEEP---PQHWVAPV 83 (125)
T ss_pred CEEEEEEecC---CCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc----eEEEEEeecccCC---CCeEEEEE
Confidence 4699998863 234689999999999999999999999999999987653 2344443322221 12356678
Q ss_pred EEEEEeCCcccc--cCcccceEeecHHhhcccC-cch
Q 026251 198 FKSQVIASNKFT--IGKCEDFVWVTKDELMEYF-PES 231 (241)
Q Consensus 198 fka~~~~G~~~~--~~e~~d~~Wvt~eEL~~~l-p~~ 231 (241)
|.|...++.+.. .+++.+++|++.+|+.+.+ +..
T Consensus 84 f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~~~ 120 (125)
T cd04679 84 YLAENFSGEPRLMEPDKLLELGWFALDALPQPLTRAT 120 (125)
T ss_pred EEEeecCCccccCCCccccEEEEeCHHHCCchhHHHH
Confidence 889888776542 2478999999999999877 543
No 9
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.5e-15 Score=116.45 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=77.0
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeE-EEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+||+++. ..+.|.||||+++.|||+.+||.||++||+|+.+. .. ..++.+.+.+... ...++
T Consensus 12 ~~vLL~~r~------~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~----~~~~~~~~~~~~~-----~~~~~ 76 (120)
T cd04680 12 GRVLLVRHT------YGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVA----ELLGVYYHSASGS-----WDHVI 76 (120)
T ss_pred CeEEEEEEC------CCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCcccccc----ceEEEEecCCCCC-----ceEEE
Confidence 468888875 23489999999999999999999999999999876 32 3345554433211 24788
Q ss_pred EEEEEEeCCcc-cccCcccceEeecHHhhcccC-cchHHHH
Q 026251 197 FFKSQVIASNK-FTIGKCEDFVWVTKDELMEYF-PESAEFL 235 (241)
Q Consensus 197 ffka~~~~G~~-~~~~e~~d~~Wvt~eEL~~~l-p~~~~~v 235 (241)
+|.|....+.. ...+++.++.|++.+||.+.+ +.....+
T Consensus 77 ~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~~~~~~ 117 (120)
T cd04680 77 VFRARADTQPVIRPSHEISEARFFPPDALPEPTTPATRRRI 117 (120)
T ss_pred EEEecccCCCccCCcccEEEEEEECHHHCcccCChHHHHHh
Confidence 99999887653 233578899999999999987 5544433
No 10
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.9e-15 Score=117.70 Aligned_cols=94 Identities=19% Similarity=0.135 Sum_probs=72.1
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ...+.|.||||+++.|||+.+||.||++||+|+++++. ..++.+.+ + +...+|
T Consensus 12 ~~vLL~~r~~----~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~----~~~~~~~~--~-------~~~~~~ 74 (121)
T cd04669 12 GEILLIRRIK----PGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVE----EIFLIVNQ--N-------GRTEHY 74 (121)
T ss_pred CEEEEEEEec----CCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeee----eEEEEEee--C-------CcEEEE
Confidence 5799999862 23578999999999999999999999999999988653 22344433 1 135789
Q ss_pred EEEEEeCCccccc----------CcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNKFTI----------GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~~~~----------~e~~d~~Wvt~eEL~~~l 228 (241)
|.|+..+|.+... .++.++.|++.+||..+.
T Consensus 75 f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~ 115 (121)
T cd04669 75 FLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIP 115 (121)
T ss_pred EEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence 9999998876431 124578999999999865
No 11
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.63 E-value=2.3e-15 Score=118.50 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=78.6
Q ss_pred CCcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEE
Q 026251 116 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 195 (241)
Q Consensus 116 ~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 195 (241)
++.+|||+++. . +.|.||||++++|||+.+||.||+.||+|+.+.... ..+.....+.++.. ..+..+
T Consensus 15 ~~~~vLl~~~~------~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~---~~~~~~ 82 (130)
T cd03428 15 NEIEYLLLQAS------Y-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLF--IVLGFKETLNYQVR---GKLKTV 82 (130)
T ss_pred CCceEEEEEcc------C-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhh--hhccceeEEEcccc---CcceEE
Confidence 45579999975 2 889999999999999999999999999999876532 11111112222211 124678
Q ss_pred EEEEEEEeCC-cccccCcccceEeecHHhhcccC--cchHHHHHh
Q 026251 196 FFFKSQVIAS-NKFTIGKCEDFVWVTKDELMEYF--PESAEFLNK 237 (241)
Q Consensus 196 fffka~~~~G-~~~~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~ 237 (241)
++|.|.+..+ .+...+++.++.|++.+|+.+++ +.....+++
T Consensus 83 ~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 127 (130)
T cd03428 83 TYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDK 127 (130)
T ss_pred EEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHH
Confidence 9999998743 44444588999999999999998 455555544
No 12
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.63 E-value=3.4e-15 Score=118.77 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=83.3
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ....+.|.||||+++.|||+.+||.||+.||+|+++... ..++.+.+..+.. .....+++
T Consensus 12 ~~vLL~~r~~---~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~---~~~~~~~~ 81 (137)
T cd03427 12 DKVLLLNRKK---GPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNL----KLVGIIKFPFPGE---EERYGVFV 81 (137)
T ss_pred CEEEEEEecC---CCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecc----eEEEEEEEEcCCC---CcEEEEEE
Confidence 5689998862 124688999999999999999999999999999977643 2235555544331 12357889
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC--cchHHHHHhhh
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 239 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~~l 239 (241)
|.|....+.+...++..++.|++.+|+.+.. +.+...++.++
T Consensus 82 f~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 82 FLATEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred EEECCcccccCCCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 9998887776544566799999999998765 56666666554
No 13
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.63 E-value=6e-15 Score=117.05 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=81.2
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+||++|.. ..++.|.||||+++.|||+.+||.||++||+|.++... ..++.+.+..+... .....+
T Consensus 10 ~~~vLlv~r~~----~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~~---~~~~~~ 78 (134)
T cd03675 10 DGRFLLVEEET----DGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT----ALLGIYQWTAPDSD---TTYLRF 78 (134)
T ss_pred CCEEEEEEEcc----CCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccc----eEEEEEEeecCCCC---eeEEEE
Confidence 45689999863 34678999999999999999999999999999987653 23455555443311 123456
Q ss_pred EEEEEEeCCccc--ccCcccceEeecHHhhcccC-----cchHHHHHhhhc
Q 026251 197 FFKSQVIASNKF--TIGKCEDFVWVTKDELMEYF-----PESAEFLNKMII 240 (241)
Q Consensus 197 ffka~~~~G~~~--~~~e~~d~~Wvt~eEL~~~l-----p~~~~~v~~~l~ 240 (241)
+|.|...++... ..+++.++.|++.+|+.+.. |.....++.+|.
T Consensus 79 ~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~ 129 (134)
T cd03675 79 AFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLA 129 (134)
T ss_pred EEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHh
Confidence 788888765442 22478899999999999886 344566766664
No 14
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=5e-15 Score=114.92 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=75.7
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCC-CCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKM-PDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~-~~~~g~kvf 196 (241)
..+||+++.. ....+.|.||||+++.|||+++||.||++||+|+++... ..++.+.+.++... .......++
T Consensus 11 ~~vLl~~r~~---~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T cd04673 11 GRVLLVRRAN---PPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG----RLLTVVDVIERDAAGRVEFHYVLI 83 (122)
T ss_pred CEEEEEEEcC---CCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec----eeEEEEEEeeccCCCccceEEEEE
Confidence 5689998752 234678999999999999999999999999999987642 22344443332211 112235667
Q ss_pred EEEEEEeCCcccccCcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|....+......++.+++|++.+|+.+..
T Consensus 84 ~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 84 DFLCRYLGGEPVAGDDALDARWVPLDELAALS 115 (122)
T ss_pred EEEEEeCCCcccCCcccceeEEECHHHHhhCc
Confidence 78888887776444588999999999998876
No 15
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.62 E-value=6.4e-15 Score=115.07 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=74.9
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCC-CCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPD-VPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~-~~g~kvf 196 (241)
..+||+++.. .+.++.|.||||+++.|||+.+||.||+.||+|+.+... ..++.+.+.++..... ......+
T Consensus 11 ~~vLl~~~~~---~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 83 (128)
T cd04684 11 GKLLLIQKNG---GPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG----RRLGSASRYFYSPDGDYDAHHLCV 83 (128)
T ss_pred CEEEEEEccC---CCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc----eeeeEEEEEEECCCCCeeccEEEE
Confidence 5699999863 124689999999999999999999999999999977652 2234333322211100 1235678
Q ss_pred EEEEEEeCCcc---cccCcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNK---FTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~---~~~~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|....+.. ....++.++.|++.+|+....
T Consensus 84 ~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (128)
T cd04684 84 FYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERL 118 (128)
T ss_pred EEEEEEecCccccCCCCCCceeeEEECHHHhhccC
Confidence 89999887763 223477899999999999766
No 16
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.62 E-value=7.1e-15 Score=119.30 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=75.5
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCC--CCC-CCceE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEK--MPD-VPSYK 194 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~--~~~-~~g~k 194 (241)
..+||+||.. .+..|.|.||||+++.|||+.+||.||++||+|+++.+..+ ..++++.+.+... ..+ ..+..
T Consensus 24 g~vLl~~R~~---~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 98 (144)
T cd03430 24 GQYLLGKRTN---RPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDA--ELLGVFEHFYDDNFFGDDFSTHYV 98 (144)
T ss_pred CeEEEEEccC---CCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccc--eEEEEEEEEeccccccCCCccEEE
Confidence 5799999863 23578999999999999999999999999999998764311 1233333222111 110 13456
Q ss_pred EEEEEEEEeCCcccc-cCcccceEeecHHhhcccC
Q 026251 195 QFFFKSQVIASNKFT-IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 195 vfffka~~~~G~~~~-~~e~~d~~Wvt~eEL~~~l 228 (241)
.++|.|....|.+.. .+++.+++|++.+||....
T Consensus 99 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 133 (144)
T cd03430 99 VLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADD 133 (144)
T ss_pred EEEEEEEEcCCcccCCchhccEeEEecHHHHhcCC
Confidence 788899888776533 3489999999999998653
No 17
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=6.6e-15 Score=115.73 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=70.8
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 198 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 198 (241)
.+||+|+.. .+|.|.||||+++.|||+.+||.||++||+|+++...- . .+...|.+.....+.....++.|
T Consensus 15 ~iLL~r~~~-----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 85 (125)
T cd04696 15 RILLVRTTK-----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIK--F--AMVQEAIFSEEFHKPAHFVLFDF 85 (125)
T ss_pred CEEEEEccC-----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccc--e--EEEEEEeccCCCCCccEEEEEEE
Confidence 588888642 36899999999999999999999999999999776421 1 12222222111111122345667
Q ss_pred EEEEeCCcccccCcccceEeecHHhhcccC
Q 026251 199 KSQVIASNKFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 199 ka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
.|....+.....+++.++.|++.+|+.++-
T Consensus 86 ~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 115 (125)
T cd04696 86 FARTDGTEVTPNEEIVEWEWVTPEEALDYP 115 (125)
T ss_pred EEEecCCcccCCcccceeEEECHHHHhcCC
Confidence 788765555555689999999999998876
No 18
>PLN02325 nudix hydrolase
Probab=99.61 E-value=7e-15 Score=119.48 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=78.0
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ....|.|.||||+++.|||+.+||.||++||+|+++.+. ..++++.+.+.... ...+...+|
T Consensus 20 ~~vLL~rr~~---~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~----~~l~~~~~~~~~~~-~~~~~i~~~ 91 (144)
T PLN02325 20 NSVLLGRRRS---SIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKI----ELLTVTNNVFLEEP-KPSHYVTVF 91 (144)
T ss_pred CEEEEEEecC---CCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce----EEEEEecceeecCC-CCcEEEEEE
Confidence 4689998863 234679999999999999999999999999999987652 23444332211111 123456788
Q ss_pred EEEEEeCCcccc----cCcccceEeecHHhhcccC-cchHHHHHhh
Q 026251 198 FKSQVIASNKFT----IGKCEDFVWVTKDELMEYF-PESAEFLNKM 238 (241)
Q Consensus 198 fka~~~~G~~~~----~~e~~d~~Wvt~eEL~~~l-p~~~~~v~~~ 238 (241)
|.|...++.... .+++.+++|++.++|...+ ......+..+
T Consensus 92 f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p~~~~~~~~ 137 (144)
T PLN02325 92 MRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWPLEKLVGSG 137 (144)
T ss_pred EEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHHHHHHHHcC
Confidence 889887654321 1256899999999999877 4444455444
No 19
>PF11788 MRP-L46: 39S mitochondrial ribosomal protein L46 ; InterPro: IPR021757 This is the L46 subunit of the mammalian mitochondrial ribosome, conserved from plants and fungi.
Probab=99.61 E-value=4e-16 Score=121.84 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=40.0
Q ss_pred cceeeEEEeeeccccCCCCCHHHHHHHHHHHHHHHHHHhcCCcccc
Q 026251 33 EKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYRRRYPDEFL 78 (241)
Q Consensus 33 ~~i~~av~leR~Pvi~~~~~p~E~~f~~~~~~~~~~~~~~~~~~~~ 78 (241)
|+|+|||||+|+|||+|+|||||++|++|+.++.+++...++..++
T Consensus 1 w~I~aav~L~R~Pvit~~~t~~E~~y~~yq~~L~~rl~~~~s~~~~ 46 (111)
T PF11788_consen 1 WKIFAAVCLSRPPVITPEPTPFEKAYYEYQKELLRRLEWEFSLYFY 46 (111)
T ss_pred CceeEEEEEecCCccCCCCCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 8999999999999999999999999999987777777766665444
No 20
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.61 E-value=7.8e-15 Score=118.99 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=80.1
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEE-EEEcceeeEEEEecCCCCCCC------C
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHT-YFVGNAPMGHMVMQPAEKMPD------V 190 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v-~~vg~~P~g~~~y~~~~~~~~------~ 190 (241)
..+||++|.. ..+.|.||+|++++||++.+||.||++||+|+++.. ..++..+ +.+.|.++..... .
T Consensus 15 ~~vLL~~r~~-----~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~-~~~~y~~~~~~~~~~~~~~~ 88 (147)
T cd03671 15 GKVFVGRRID-----TPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIP-DWLRYDLPPELKLKIWGGRY 88 (147)
T ss_pred CEEEEEEEcC-----CCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcC-CeeEeeChhhhhccccCCcC
Confidence 5699999862 227999999999999999999999999999998643 2344332 3344544422100 1
Q ss_pred CceEEEEEEEEEeC--Cccccc----CcccceEeecHHhhcccC-cchHHHHHh
Q 026251 191 PSYKQFFFKSQVIA--SNKFTI----GKCEDFVWVTKDELMEYF-PESAEFLNK 237 (241)
Q Consensus 191 ~g~kvfffka~~~~--G~~~~~----~e~~d~~Wvt~eEL~~~l-p~~~~~v~~ 237 (241)
.+..+++|.+.+.. +.+.+. +++.++.|++.+|+.++. +--...+.+
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 142 (147)
T cd03671 89 RGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKRPVYEA 142 (147)
T ss_pred CCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhHHHHHH
Confidence 24577888888875 444332 389999999999999998 544444444
No 21
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.3e-14 Score=114.56 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=73.2
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCC---CCCCCCce
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAE---KMPDVPSY 193 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~---~~~~~~g~ 193 (241)
++.+||+++.. ..++.|.||||+++.|||+.+||.||+.||+|..+... ...+++.|.+.. ......+.
T Consensus 11 ~~~vLl~~r~~----~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (128)
T cd04687 11 NDKILLIKHHD----DGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG----PLLFVREYIGHNPTSELPGHFHQ 82 (128)
T ss_pred CCEEEEEEEEc----CCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC----cEEEEEEEeccCccccCCCceeE
Confidence 45799998862 24578999999999999999999999999999987642 112222332111 00012345
Q ss_pred EEEEEEEEEeCCccc-----ccCcccceEeecHHhhcccC
Q 026251 194 KQFFFKSQVIASNKF-----TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 194 kvfffka~~~~G~~~-----~~~e~~d~~Wvt~eEL~~~l 228 (241)
..+||.|+...+... ...+..++.|++.++|.++.
T Consensus 83 i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~ 122 (128)
T cd04687 83 VELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIP 122 (128)
T ss_pred EEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCccc
Confidence 778999999877541 11245699999999998876
No 22
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=2.3e-14 Score=112.95 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=77.8
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ...++.|.||||+++.|||+.+||.||++||+|+++... ..++.+....+.. ......+|
T Consensus 14 ~~iLl~~r~~---~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~----~~~~~~~~~~~~~---~~~~~~~~ 83 (129)
T cd04678 14 GKVLLGKRKG---SHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV----QFLTVTNDVFEEE---GKHYVTIF 83 (129)
T ss_pred CeEEEEeccC---CCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce----EEEEEEeEEeCCC---CcEEEEEE
Confidence 4689998762 135789999999999999999999999999999987652 1223332222211 12356788
Q ss_pred EEEEEeCCcccc----cCcccceEeecHHhhcccCcchHHHHHhhh
Q 026251 198 FKSQVIASNKFT----IGKCEDFVWVTKDELMEYFPESAEFLNKMI 239 (241)
Q Consensus 198 fka~~~~G~~~~----~~e~~d~~Wvt~eEL~~~lp~~~~~v~~~l 239 (241)
|.|....+.... .+++.+++|++.+||.+. +....-+++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~-~~~~~~~~~~~ 128 (129)
T cd04678 84 VKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV-DPLFLPLKNLF 128 (129)
T ss_pred EEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc-chhhHHHHHHh
Confidence 889988776533 136789999999999985 44444444443
No 23
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.1e-14 Score=114.80 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=74.5
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ....|.|.||||+++.|||+.+||.||++||+|+++.... .++.+.+.++.... ......+|
T Consensus 13 ~~vLL~~r~~---~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 84 (130)
T cd04681 13 GELLVVRRAR---EPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELS----YLFSLPNTYPYGGM-EYDTLDLF 84 (130)
T ss_pred CcEEEEEecC---CCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccccee----EEEeecceeeeCCc-eeEEEEEE
Confidence 4588888753 1246799999999999999999999999999999776421 12222111111110 11233457
Q ss_pred EEEEEeCCccccc-CcccceEeecHHhhc-ccC--cchHHHHHhh
Q 026251 198 FKSQVIASNKFTI-GKCEDFVWVTKDELM-EYF--PESAEFLNKM 238 (241)
Q Consensus 198 fka~~~~G~~~~~-~e~~d~~Wvt~eEL~-~~l--p~~~~~v~~~ 238 (241)
|.|++.++..... +++.++.|++.+||. +.+ |.....+++.
T Consensus 85 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~ 129 (130)
T cd04681 85 FVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERW 129 (130)
T ss_pred EEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhh
Confidence 8888775544332 478999999999995 333 5566666654
No 24
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.3e-14 Score=112.85 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=74.3
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
++.+||++|...+ ...|.|.||||+++.|||+.+||.||+.||+|+.+....+ ..++.+.+.++.. .+...+
T Consensus 10 ~~~vLL~~r~~~~--~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~--~~~~~~~~~~~~~----~~~~~~ 81 (120)
T cd04683 10 DDEVLLQRRANTG--YMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDL--RLAHTMHRRTEDI----ESRIGL 81 (120)
T ss_pred CCEEEEEEccCCC--CCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhhe--EEEEEEEecCCCC----ceEEEE
Confidence 4579999986321 2368999999999999999999999999999998752111 1233333332221 124567
Q ss_pred EEEEEEeCCccccc--CcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTI--GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~--~e~~d~~Wvt~eEL~~~l 228 (241)
||.|....|.+... +++.++.|++.+||...+
T Consensus 82 ~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 82 FFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred EEEEEeecCccccCCCCcEeeEEEEchHHCcchh
Confidence 88898877765432 478899999999998876
No 25
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.1e-14 Score=115.72 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=77.6
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+||++|.. ...|.|.||||+++.|||+.+||.||++||+|+.+.....+ ..+. +.|..+.. ....++
T Consensus 13 ~~~vLl~~r~~----~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~~~-~~~~~~~~----~~~~~~ 82 (131)
T cd04695 13 ETKVLLLKRVK----TLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNA-DYLE-QFYEANDN----RILMAP 82 (131)
T ss_pred CCEEEEEEecC----CCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccc-ccee-eEeecCCc----eEEEEE
Confidence 45689999862 24789999999999999999999999999999976532111 1111 12222211 123456
Q ss_pred EEEEEEeCCcc-cccCcccceEeecHHhhcccC--cchHHHHHhh
Q 026251 197 FFKSQVIASNK-FTIGKCEDFVWVTKDELMEYF--PESAEFLNKM 238 (241)
Q Consensus 197 ffka~~~~G~~-~~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~~ 238 (241)
+|.+....+.. ...+++.++.|++.+|+.+.+ |.+...++.+
T Consensus 83 ~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 127 (131)
T cd04695 83 VFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHV 127 (131)
T ss_pred EEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHH
Confidence 67777655443 234589999999999999988 5666666654
No 26
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=3.2e-14 Score=111.39 Aligned_cols=110 Identities=13% Similarity=0.011 Sum_probs=82.2
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||.+|+.. ...+|.|+||+|+++.|||..+||.||+.||+|..+.+. .+++.+.+.++. ....+++
T Consensus 16 ~~vLl~~R~~~--~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~----~~~~~~~h~~~~-----~~~~~~~ 84 (128)
T TIGR00586 16 GEIIITRRADG--HMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFS----EFEKLEYEFYPR-----HITLWFW 84 (128)
T ss_pred CEEEEEEEeCC--CCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceee----eEEEEEEEECCC-----cEEEEEE
Confidence 47999998632 235789999999999999999999999999999986542 224445555443 2367899
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC-c-chHHHHHhhh
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-P-ESAEFLNKMI 239 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p-~~~~~v~~~l 239 (241)
|.|...++.... .+..++.|++.+++.++. | .+..+++.+.
T Consensus 85 ~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (128)
T TIGR00586 85 LLERWEGGPPGK-EGQPEEWWVLVGLLADDFFPAANPVIIKLLR 127 (128)
T ss_pred EEEEEcCCCcCc-ccccccEEeCHHHCCccCCCCCCHHHHHHHh
Confidence 999887665432 356789999999999988 5 5566666543
No 27
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=2.6e-14 Score=112.10 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=74.0
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
+.+||++++ ..+.|.||||+++.|||+.+||.||++||+|+.+... ..++.+.+..............++
T Consensus 13 ~~vLL~~~~------~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 82 (123)
T cd04672 13 GKILLVREK------SDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR----KLAAVDDRNKHHPPPQPYQVYKLF 82 (123)
T ss_pred CEEEEEEEc------CCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe----EEEEEeccccccCCCCceEEEEEE
Confidence 468899876 2688999999999999999999999999999977442 123333221001000012345678
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC-cc
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 230 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~ 230 (241)
|.|.+..+.+....+..+++|++.+||.+.. |.
T Consensus 83 f~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~ 116 (123)
T cd04672 83 FLCEILGGEFKPNIETSEVGFFALDDLPPLSEKR 116 (123)
T ss_pred EEEEecCCcccCCCceeeeEEECHHHCcccccCC
Confidence 9999987766554688999999999998876 53
No 28
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.58 E-value=2.2e-14 Score=117.99 Aligned_cols=116 Identities=10% Similarity=0.117 Sum_probs=81.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeE-EEEEcceeeEEEEecCCCC-----CCCCC
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEK-----MPDVP 191 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~-----~~~~~ 191 (241)
..+||+++.. ..+.|.||+|++++|||+++||.||+.||+|..+. +.+++..+ ..+.|.++.. .....
T Consensus 20 g~vLL~~r~~-----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~ 93 (156)
T PRK00714 20 GQVFWGRRIG-----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETR-DWLRYDLPKRLVRRSKGVYR 93 (156)
T ss_pred CEEEEEEEcC-----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcC-CeEEecCcHHHhhccCCccc
Confidence 4689998852 24789999999999999999999999999999765 33343322 2345555432 11134
Q ss_pred ceEEEEEEEEEeCCc--cccc----CcccceEeecHHhhcccC-cchHHHHHhhh
Q 026251 192 SYKQFFFKSQVIASN--KFTI----GKCEDFVWVTKDELMEYF-PESAEFLNKMI 239 (241)
Q Consensus 192 g~kvfffka~~~~G~--~~~~----~e~~d~~Wvt~eEL~~~l-p~~~~~v~~~l 239 (241)
|..++||.|....+. +.+. +++.+++|++.+|+.+.+ +.....+.+++
T Consensus 94 ~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~ 148 (156)
T PRK00714 94 GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVL 148 (156)
T ss_pred CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHH
Confidence 557889999986543 2221 378899999999999987 65455555443
No 29
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.58 E-value=2.6e-14 Score=112.23 Aligned_cols=100 Identities=20% Similarity=0.151 Sum_probs=70.8
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+||++++ ..+.|.||||+++.|||+.+||.||++||+|+.+... .+++.+.+.+..... ..+...+
T Consensus 11 ~~~vLlv~~~------~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~----~~l~~~~~~~~~~~~-~~~~~~~ 79 (125)
T cd04689 11 GNKVLLARVI------GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG----RFLGAIENQWHEKGV-RTHEINH 79 (125)
T ss_pred CCEEEEEEec------CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc----EEEEEEeeeeccCCc-eEEEEEE
Confidence 4579999875 2578999999999999999999999999999977642 344544433322111 1234568
Q ss_pred EEEEEEeCCc----ccccCcccceEeecHHhhccc
Q 026251 197 FFKSQVIASN----KFTIGKCEDFVWVTKDELMEY 227 (241)
Q Consensus 197 ffka~~~~G~----~~~~~e~~d~~Wvt~eEL~~~ 227 (241)
+|.|....+. ....+++.+++|++.+|+..+
T Consensus 80 ~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04689 80 IFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY 114 (125)
T ss_pred EEEEEcccccccCCccCccceEEEEEccHHHcccC
Confidence 8888876543 112236889999999998644
No 30
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.57 E-value=2.5e-14 Score=115.69 Aligned_cols=99 Identities=10% Similarity=0.128 Sum_probs=73.2
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 198 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 198 (241)
.+||+++.. ....+.|+||+|++++|||+.+||.||++||+|+++... .+++.+.+.++... ....++|
T Consensus 26 ~vLL~~r~~---~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~~----~~~~~~f 94 (142)
T cd04700 26 DVLLVQEKG---GPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV----KFLGTYLGRFDDGV----LVLRHVW 94 (142)
T ss_pred cEEEEEEcC---CCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc----EEEEEEEEEcCCCc----EEEEEEE
Confidence 478887652 134688999999999999999999999999999987653 23454544443221 1345788
Q ss_pred EEEEeCCccc--ccCcccceEeecHHhhcccC
Q 026251 199 KSQVIASNKF--TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 199 ka~~~~G~~~--~~~e~~d~~Wvt~eEL~~~l 228 (241)
.|.+..+... ..+++.++.|++.+|+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 126 (142)
T cd04700 95 LAEPEGQTLAPKFTDEIAEASFFSREDVAQLY 126 (142)
T ss_pred EEEecCCccccCCCCCEEEEEEECHHHhhhcc
Confidence 8988765432 23588999999999999988
No 31
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=2.3e-14 Score=111.99 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=74.2
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|...+ ....|.|.||||++++|||+++||.||++||+|..+... ..++.+.+.+. ....++|
T Consensus 11 ~~vLL~rR~~~~-~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~----~~l~~~~~~~~------~~~~~~~ 79 (117)
T cd04691 11 DKVLLERRSLTK-NADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSY----TYLCSLYHPTS------ELQLLHY 79 (117)
T ss_pred CEEEEEEeCCCC-CCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccc----eEEEEEeccCC------CeEEEEE
Confidence 579999886311 125689999999999999999999999999999975221 12222222111 1257889
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccCcc
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYFPE 230 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~lp~ 230 (241)
|.|....|.+.. +++.+..|++.+|+....++
T Consensus 80 ~~~~~~~~~~~~-~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 80 YVVTFWQGEIPA-QEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred EEEEEecCCCCc-ccccccEEcCHHHcchhhhh
Confidence 999988887654 58899999999999865543
No 32
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=1.8e-14 Score=113.72 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=74.0
Q ss_pred CCcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEE-EEEcceeeEE-EEecCCCCCCCCCce
Q 026251 116 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHT-YFVGNAPMGH-MVMQPAEKMPDVPSY 193 (241)
Q Consensus 116 ~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v-~~vg~~P~g~-~~y~~~~~~~~~~g~ 193 (241)
++..+||++|.. ...|.|.||||+++.|||+.+||.||++||+|+.+.. .+++. .+. ..|.+... ..+.
T Consensus 13 ~~~~vLL~~r~~----~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~~~~~---~~~~ 83 (129)
T cd04664 13 GEGRVLLLRRSD----KYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDR--GASIAFVEFTDN---GRVW 83 (129)
T ss_pred CCCEEEEEEeCC----CCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEee--cccccccccCCC---ceEE
Confidence 356799999862 2478999999999999999999999999999998642 22221 110 01222111 1235
Q ss_pred EEEEEEEEEeCCc-ccccCcccceEeecHHhhcccC
Q 026251 194 KQFFFKSQVIASN-KFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 194 kvfffka~~~~G~-~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
.+++|.|.+..+. ....+++.++.|++.+|+.+.+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 119 (129)
T cd04664 84 TEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALL 119 (129)
T ss_pred EEeEEEEEcCCCCcccCCccccccEecCHHHHHHHH
Confidence 6788999887654 2333588999999999999887
No 33
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=3.1e-14 Score=111.91 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=73.1
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||+++. ..+.|.||||+++.|||+.+||.||+.||+|+.+.+. ..++.+.+.+..... .....++|
T Consensus 12 ~~vLl~~~~------~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~ 80 (126)
T cd04688 12 GKLLVQKNP------DETFYRPPGGGIEFGESSEEALIREFKEELGLKIEIT----RLLGVVENIFTYNGK-PGHEIEFY 80 (126)
T ss_pred CEEEEEEeC------CCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecc----eeeEEEEEeeccCCc-ccEEEEEE
Confidence 368888875 2578999999999999999999999999999977653 223333222111110 12457899
Q ss_pred EEEEEeCCcccc--------cCcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNKFT--------IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~~~--------~~e~~d~~Wvt~eEL~~~l 228 (241)
|.|.+.++.... ..++.++.|++.++|....
T Consensus 81 f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 119 (126)
T cd04688 81 YLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIK 119 (126)
T ss_pred EEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence 999998776532 2478899999999998765
No 34
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.57 E-value=7e-14 Score=109.14 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=79.7
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||+||+..+ ..+|.|.||||++++||++.+||.||+.||+|+.+... ..++.++|.++.. ...++|
T Consensus 16 ~~vll~rR~~~~--~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~----~~~~~~~~~~~~~-----~~~~~~ 84 (129)
T PRK10776 16 NEIFITRRAADA--HMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA----TLFEKLEYEFPDR-----HITLWF 84 (129)
T ss_pred CEEEEEEecCCC--CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc----eEEEEEEeeCCCc-----EEEEEE
Confidence 479999986311 24689999999999999999999999999999876531 1245556655532 357788
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC-c-chHHHHHhh
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-P-ESAEFLNKM 238 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p-~~~~~v~~~ 238 (241)
|.+....+.+. ..+..++.|++.+|+..+. | ....+++.+
T Consensus 85 ~~~~~~~~~~~-~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 85 WLVESWEGEPW-GKEGQPGRWVSQVALNADEFPPANEPIIAKL 126 (129)
T ss_pred EEEEEECCccC-CccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence 88887666543 2367889999999999876 5 455555544
No 35
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=3.7e-14 Score=112.16 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=75.7
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+||++++. .+.|.||+|+++.|||+.+||.||+.||+|+++.+. ...++.+.|.++... ......++
T Consensus 14 ~~~vLLv~~~~------~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~---~~~l~~~~~~~~~~~-~~~~~~~~ 83 (122)
T cd04666 14 EVEVLLVTSRR------TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIG---KRPLGRFEYRKRSKN-RPPRCEVA 83 (122)
T ss_pred ceEEEEEEecC------CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCccccc---ceEEEEEEeeecCCC-CCceEEEE
Confidence 35799998752 378999999999999999999999999999976542 135666666544321 12356888
Q ss_pred EEEEEEeCCccc-ccCcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKF-TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~-~~~e~~d~~Wvt~eEL~~~l 228 (241)
||.+...+.... ...++.++.|++.+|+.+++
T Consensus 84 ~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~ 116 (122)
T cd04666 84 VFPLEVTEELDEWPEMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred EEEEEEeccccCCcccCceEEEEecHHHHHHhc
Confidence 998887654322 22356799999999998877
No 36
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=3.4e-14 Score=111.30 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=73.6
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
++.+||++|...+.....|.|.||+|+++.|||+.+||.||+.||+|+++....+ .....|.++. .....+
T Consensus 11 ~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~----~~~~~~~~~~-----~~~~~~ 81 (122)
T cd04682 11 DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI----PWFRVYPSAS-----PPGTEH 81 (122)
T ss_pred CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc----ceeEecccCC-----CCceEE
Confidence 3679999986311123568999999999999999999999999999998753211 1122233221 124778
Q ss_pred EEEEEEeCCc-cc-ccCcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASN-KF-TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~-~~-~~~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|...++. .. ..+++.++.|++.+||.+..
T Consensus 82 ~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 82 VFVVPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred EEEEEEecCCCccccCchhheeecccHHHHhhcc
Confidence 8888888664 22 23589999999999998765
No 37
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.56 E-value=6.9e-14 Score=112.28 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=74.9
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcc--eeeEEEE-ecCCCCCCCCCceE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGN--APMGHMV-MQPAEKMPDVPSYK 194 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~--~P~g~~~-y~~~~~~~~~~g~k 194 (241)
..+||++|. ..|.|.+|||+++.|||+.+||.||++||+|+++....... .+..++. +..+.........-
T Consensus 15 ~~vLLv~r~------~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (138)
T cd03674 15 GKVLLTHHR------KLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRGVPGHLHL 88 (138)
T ss_pred CeEEEEEEc------CCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCCCCCcEEE
Confidence 578999875 25789999999999999999999999999999765421110 0111111 11111100001113
Q ss_pred EEEEEEEEeCCccc--ccCcccceEeecHHhhcccC--cchHHHHHhhh
Q 026251 195 QFFFKSQVIASNKF--TIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 239 (241)
Q Consensus 195 vfffka~~~~G~~~--~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~~l 239 (241)
.++|.|....|... ..+++.+++|++.+|+.++. +.....+.+.|
T Consensus 89 ~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 89 DLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred EEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 35688887777654 33588999999999997654 45556665544
No 38
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=3.5e-14 Score=112.30 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=73.3
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
++.+||+++.. .+..+.|.||||+++.|||+++||.||++||+|..+.+. ..++++. .+ .+...+
T Consensus 11 ~~~vLl~~r~~---~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~----~~~~~~~--~~------~~~~~~ 75 (123)
T cd04671 11 QGEVLLIQEAK---RSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT----TLLSVEE--QG------GSWFRF 75 (123)
T ss_pred CCEEEEEEecC---CCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc----eEEEEEc--cC------CeEEEE
Confidence 35799998763 234678999999999999999999999999999987653 1233321 11 124568
Q ss_pred EEEEEEeCCccccc----CcccceEeecHHhhcccC-cch
Q 026251 197 FFKSQVIASNKFTI----GKCEDFVWVTKDELMEYF-PES 231 (241)
Q Consensus 197 ffka~~~~G~~~~~----~e~~d~~Wvt~eEL~~~l-p~~ 231 (241)
+|.|+..+|.+... .++.+++|++.+||...+ +++
T Consensus 76 ~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 115 (123)
T cd04671 76 VFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPLRAHD 115 (123)
T ss_pred EEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCccchhe
Confidence 88999998876432 256699999999995444 443
No 39
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.55 E-value=1.1e-13 Score=106.55 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=81.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|+.. +...|.|.||+|.++.||++.+||.||+.||+|.++.. ..+++.++|.++. .+..+++
T Consensus 13 ~~~Ll~~r~~~--~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~----~~~~~~~~~~~~~-----~~~~~~~ 81 (124)
T cd03425 13 GRILIAQRPAG--KHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEV----GELLATVEHDYPD-----KRVTLHV 81 (124)
T ss_pred CEEEEEEeCCC--CCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEec----cceEEEEEeeCCC-----CeEEEEE
Confidence 56899988631 13578999999999999999999999999999987654 2356666666653 2367889
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC-c-chHHHHH
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-P-ESAEFLN 236 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p-~~~~~v~ 236 (241)
|.|.+..+... ..+..++.|++.+|+.++. + .+..+++
T Consensus 82 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 121 (124)
T cd03425 82 FLVELWSGEPQ-LLEHQELRWVPPEELDDLDFPPADVPIVA 121 (124)
T ss_pred EEEeeeCCCcc-cccCceEEEeeHHHcccCCCCcccHHHHH
Confidence 99988766543 2467899999999999986 4 4555554
No 40
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.55 E-value=1.5e-14 Score=117.79 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=66.4
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||+++.. .+.|+||||+++.|||+.+||.||++||||+.+..+.. + ..+.. ... .+..+.+
T Consensus 14 ~~vLLvr~~~------~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~---~-~~~~~--~~~----~~~~~~~ 77 (145)
T cd03672 14 DKVLLVKGWK------SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID---K-DDYIE--LII----RGQNVKL 77 (145)
T ss_pred CEEEEEEecC------CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc---c-ceeee--ccc----CCcEEEE
Confidence 4799998752 35899999999999999999999999999998765321 1 11111 110 1134556
Q ss_pred EEEEEeCCcc----cccCcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNK----FTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~----~~~~e~~d~~Wvt~eEL~~~l 228 (241)
|.+....+.. ...+++.++.|++.+|+.+.+
T Consensus 78 f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 112 (145)
T cd03672 78 YIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKK 112 (145)
T ss_pred EEEecCCCCcccCcCChhhhheEEEeeHHHhhhhh
Confidence 6565554432 122478999999999999887
No 41
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.55 E-value=4.1e-14 Score=112.83 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=71.1
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ...+.|.||||+++.|||+.+||.||+.||+|+++... ..++.+.+.++ ....++
T Consensus 12 ~~vLL~~r~~----~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~----~~l~~~~~~~~-------~~~~~~ 76 (131)
T cd03429 12 DRILLARQPR----FPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI----RYVGSQPWPFP-------SSLMLG 76 (131)
T ss_pred CEEEEEEecC----CCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee----EEEeecCCCCC-------ceEEEE
Confidence 5688998863 23689999999999999999999999999999977542 22333323222 135677
Q ss_pred EEEEEeCCccccc-CcccceEeecHHhhccc
Q 026251 198 FKSQVIASNKFTI-GKCEDFVWVTKDELMEY 227 (241)
Q Consensus 198 fka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~ 227 (241)
|.|....+..... .++.++.|++.+||.+.
T Consensus 77 f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 77 FTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 8888877665433 47899999999998885
No 42
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=9.5e-14 Score=108.06 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=70.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEE-EEcceeeEE--EEecCCCCCCCCCceE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTY-FVGNAPMGH--MVMQPAEKMPDVPSYK 194 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~-~vg~~P~g~--~~y~~~~~~~~~~g~k 194 (241)
..+||++|.. .+.|.||+|+++.|||+.+||.||++||+|..+... +++ .+.. +.+.++... .....
T Consensus 14 ~~vLl~~r~~------~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~ 83 (129)
T cd04676 14 GRVLLIRRSD------NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVG--IYTGPVHVVTYPNGD--VRQYL 83 (129)
T ss_pred CeEEEEEecC------CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEE--EeecccceeecCCCC--cEEEE
Confidence 5689998862 388999999999999999999999999999976542 111 0111 112222211 11345
Q ss_pred EEEEEEEEeCCccc-ccCcccceEeecHHhhcccC
Q 026251 195 QFFFKSQVIASNKF-TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 195 vfffka~~~~G~~~-~~~e~~d~~Wvt~eEL~~~l 228 (241)
.++|.|...++... ...+..++.|++.+|+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~ 118 (129)
T cd04676 84 DITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLL 118 (129)
T ss_pred EEEEEEEeeCCeecCCCCceeEEEEEChhhCcccc
Confidence 67777887776552 23478899999999999987
No 43
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.53 E-value=1.2e-13 Score=109.60 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=72.9
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++|.. ....|.|.||||+++.|||+.+||.||++||+|..+... .+++++. .+. .+...+|
T Consensus 24 ~~vLL~kr~~---~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~----~~~~~~~--~~~-----~~~~~~~ 89 (130)
T cd04511 24 GKVLLCRRAI---EPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID----GLYAVYS--VPH-----ISQVYMF 89 (130)
T ss_pred CEEEEEEecC---CCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee----eEEEEEe--cCC-----ceEEEEE
Confidence 4699998863 235688999999999999999999999999999977542 2344443 232 2246788
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhc
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELM 225 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~ 225 (241)
|.|+..++.+....++.+..|++.++|.
T Consensus 90 f~~~~~~~~~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 90 YRARLLDLDFAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEEEcCCcccCCcchhceEEECHHHCC
Confidence 9999988776555578899999999996
No 44
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=1.1e-13 Score=106.81 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+||++++ .|.|.||||+++.|||+.+||.||+.||+|+.+... ..++ .|.. . ....+
T Consensus 10 ~~~vLlv~r~-------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~----~~~~--~~~~--~-----~~~~~ 69 (112)
T cd04667 10 GGRVLLVRKS-------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDL----LYLF--HVDG--G-----STRHH 69 (112)
T ss_pred CCEEEEEEcC-------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccce----EEEE--EEeC--C-----CEEEE
Confidence 4579999875 378999999999999999999999999999875431 1122 2211 1 13567
Q ss_pred EEEEEEeCCcc-cccCcccceEeecHHhhcccC-cc
Q 026251 197 FFKSQVIASNK-FTIGKCEDFVWVTKDELMEYF-PE 230 (241)
Q Consensus 197 ffka~~~~G~~-~~~~e~~d~~Wvt~eEL~~~l-p~ 230 (241)
+|.|.+..+.. ...+++.++.|++.+|+.+.. +.
T Consensus 70 ~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 105 (112)
T cd04667 70 VFVASVPPSAQPKPSNEIADCRWLSLDALGDLNASA 105 (112)
T ss_pred EEEEEcCCcCCCCCchheeEEEEecHHHhhhcccch
Confidence 88888775533 233578899999999999887 54
No 45
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.52 E-value=7.7e-14 Score=109.11 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=79.4
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 198 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 198 (241)
.+||+++...+ ....+.|.||||++++|||+.+||.||+.||+|+.+... .. .+...|..+... ..+..+++|
T Consensus 15 ~vLl~~r~~~~-~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~--~~--~~~~~~~~~~~~--~~~~~~~~~ 87 (134)
T PF00293_consen 15 KVLLIKRSRSP-ITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPL--EL--LGLFSYPSPSGD--PEGEIVIFF 87 (134)
T ss_dssp EEEEEEESTTS-SSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEE--EE--EEEEEEEETTTE--SSEEEEEEE
T ss_pred EEEEEEecCCC-CCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccc--cc--ceeeeecccCCC--cccEEEEEE
Confidence 79999987311 114589999999999999999999999999999987432 11 222333322221 124688888
Q ss_pred EEEEeCCccc--cc-CcccceEeecHHhhcccC-c-chHHHHHhhh
Q 026251 199 KSQVIASNKF--TI-GKCEDFVWVTKDELMEYF-P-ESAEFLNKMI 239 (241)
Q Consensus 199 ka~~~~G~~~--~~-~e~~d~~Wvt~eEL~~~l-p-~~~~~v~~~l 239 (241)
.+.+..+... .. .++.++.|++.+|+.+.. . .....+..++
T Consensus 88 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 133 (134)
T PF00293_consen 88 IAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWLY 133 (134)
T ss_dssp EEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcccc
Confidence 8888766522 22 388999999999999988 4 3334555544
No 46
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=6.9e-14 Score=110.18 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=69.3
Q ss_pred cEEEEEEccCCCCCCCCCceecC-ccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP-~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+||++|...+ ....|.|.|| ||+++.|||+ +||.||++||+|+++.+. .-.+++.+.+..+. . ..++
T Consensus 12 g~vLl~~R~~~~-~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~-~-----~~~~ 81 (127)
T cd04693 12 GELLLQKRSPNK-DGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFS--ELRPLFRYFFEAEG-F-----DDYY 81 (127)
T ss_pred CeEEEEEccCCC-CCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChh--hcEEEEEEEeecCC-e-----EEEE
Confidence 468888886311 1245899998 8999999999 999999999999987642 11244555443321 1 2344
Q ss_pred EEEEEEeCCccccc-CcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
+|.+....+..... +++.++.|++.+|+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04693 82 LFYADVEIGKLILQKEEVDEVKFVSKDEIDGLI 114 (127)
T ss_pred EEEecCcccccccCHHHhhhEEEeCHHHHHHHH
Confidence 45454444444332 478999999999999888
No 47
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=3.9e-13 Score=105.73 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=67.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++++. ..++.|.||||+++.|||+.+||.||+.||+|+.+.... +++...+. +.. .+...+|
T Consensus 14 ~~vLl~~r~~----~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~----~~~~~~~~-~~~----~~~~~~~ 80 (127)
T cd04670 14 NEVLVVQERN----KTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS----VVGFRHAH-PGA----FGKSDLY 80 (127)
T ss_pred CeEEEEEccC----CCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE----EEEEEecC-CCC----cCceeEE
Confidence 4699998752 246899999999999999999999999999999876532 23332221 111 1123455
Q ss_pred EEEEEeC--Ccccc-cCcccceEeecHHhhcccC
Q 026251 198 FKSQVIA--SNKFT-IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~--G~~~~-~~e~~d~~Wvt~eEL~~~l 228 (241)
|.|.+.. +.+.. .+++.++.|++.+||.+.-
T Consensus 81 ~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 81 FICRLKPLSFDINFDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred EEEEEccCcCcCCCChhhhheeEEEcHHHHhcch
Confidence 6676643 22222 2478899999999997654
No 48
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.2e-13 Score=105.46 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=70.3
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||++++ ..+.|.||||.+++||++.+||.||++||+|+++...-+ ..++.+.+...... .....+++
T Consensus 12 ~~vLl~~r~------~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~ 81 (118)
T cd04690 12 GRVLLVRKR------GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSL--EYLGTFRAPAANEP--GVDVRATV 81 (118)
T ss_pred CeEEEEEEC------CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhhe--EEEEEEecccccCC--CcEEEEEE
Confidence 468888875 257899999999999999999999999999997654101 12333322111110 12357888
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
|.|.... .+....++.++.|++.+|+....
T Consensus 82 f~~~~~~-~~~~~~e~~~~~W~~~~e~~~~~ 111 (118)
T cd04690 82 YVAELTG-EPVPAAEIEEIRWVDYDDPADDR 111 (118)
T ss_pred EEEcccC-CcCCCchhhccEEecHHHccccc
Confidence 8888765 44444588999999999996655
No 49
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=3e-13 Score=106.88 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=70.7
Q ss_pred cEEEEEEccCCCCCCCCCceec-CccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHF-PEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~F-P~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+||++|...+ ....|.|+| |||+++.||++.+||.||+.||+|+.+.. ..+++.+.|..... .....
T Consensus 12 ~~iLl~~R~~~~-~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~----l~~~~~~~~~~~~~-----~~~~~ 81 (126)
T cd04697 12 GKLCVHKRTLTK-DWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQ----LTPLGLFYYDTDGN-----RVWGK 81 (126)
T ss_pred CeEEEEECCCCC-CCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccc----cEEeeEEEecCCCc-----eEEEE
Confidence 457788775311 224678999 68999999999999999999999997752 13455555432211 13445
Q ss_pred EEEEEEeCCccccc-CcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|... +++.+. +++.++.|++.+|+.+.+
T Consensus 82 ~f~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~ 113 (126)
T cd04697 82 VFSCVYD-GPLKLQEEEVEEITWLSINEILQFK 113 (126)
T ss_pred EEEEEEC-CCCCCCHhHhhheEEcCHHHHHHHh
Confidence 6777663 554443 478999999999999877
No 50
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.49 E-value=2.3e-13 Score=111.85 Aligned_cols=102 Identities=10% Similarity=-0.030 Sum_probs=71.1
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCC-CCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 195 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~g-Etl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 195 (241)
+..+||+||.... ....|.|.||||+++.| ||+.+||.||++||+|+++... ..++.+...+.. .+..+
T Consensus 15 ~~~vLL~~R~~~~-~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~----~~l~~~~~~~~~-----~~~~v 84 (157)
T cd03426 15 ELRVLLTKRASHL-RSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSV----EVLGRLPPYYTR-----SGFVV 84 (157)
T ss_pred ceEEEEEEccccc-ccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccce----EEEEECCCcccc-----CCCEE
Confidence 3579999987311 12578999999999999 9999999999999999987642 122322111111 12466
Q ss_pred EEEEEEEeCC-ccccc-CcccceEeecHHhhcccC
Q 026251 196 FFFKSQVIAS-NKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 196 fffka~~~~G-~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
++|.|....+ .+.+. +|+.++.|++.+|+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 85 TPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred EEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCcC
Confidence 6677766553 33333 388999999999998874
No 51
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=2.4e-13 Score=107.12 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=67.3
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEE--ecCCCCCCCC-CceEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMV--MQPAEKMPDV-PSYKQ 195 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~--y~~~~~~~~~-~g~kv 195 (241)
.+||++++. .+.|.||||.++.|||+.+||.||++||+|+.+...- .++.+. ..+.....+. .....
T Consensus 20 ~vLL~~r~~------~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 89 (132)
T cd04677 20 EVLLQKRSD------TGDWGLPGGAMELGESLEETARRELKEETGLEVEELE----LLGVYSGKEFYVKPNGDDEQYIVT 89 (132)
T ss_pred CEEEEEecC------CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeE----EEEEecCCceeecCCCCcEEEEEE
Confidence 578888752 3789999999999999999999999999999776521 122221 0111111111 12345
Q ss_pred EEEEEEEeCCcccc-cCcccceEeecHHhhcccC
Q 026251 196 FFFKSQVIASNKFT-IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 196 fffka~~~~G~~~~-~~e~~d~~Wvt~eEL~~~l 228 (241)
+||.+....+.+.. .+++.++.|++.+|+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~ 123 (132)
T cd04677 90 LYYVTKVFGGKLVPDGDETLELKFFSLDELPELI 123 (132)
T ss_pred EEEEEeccCCcccCCCCceeeEEEEChhHCccch
Confidence 66666665555332 3478899999999999887
No 52
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.48 E-value=2.9e-13 Score=110.35 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=71.3
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 198 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 198 (241)
.+|||+|+. .+..|.|.||||.++.|||+++||.||++||||+++..- ..+++ |..+.......++.++||
T Consensus 22 ~iLLvrR~~---~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~----~~~~v--~~~~~rd~r~~~v~~~~~ 92 (145)
T COG1051 22 RILLVRRAN---EPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVL----ELLAV--FDDPGRDPRGHHVSFLFF 92 (145)
T ss_pred EEEEEEecC---CCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccce----eEEEE--ecCCCCCCceeEEEEEEE
Confidence 799999974 456789999999999999999999999999999986542 12333 333332111233455555
Q ss_pred EEEEeCCcccccC--cccceEeecHHhhcccC
Q 026251 199 KSQVIASNKFTIG--KCEDFVWVTKDELMEYF 228 (241)
Q Consensus 199 ka~~~~G~~~~~~--e~~d~~Wvt~eEL~~~l 228 (241)
.|.. .|+....+ +..+..|++.++|....
T Consensus 93 ~~~~-~g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 93 AAEP-EGELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred EEec-CCCcccCChhhHhhcceecHhHccccc
Confidence 5555 45443333 78899999999999765
No 53
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.47 E-value=5.2e-13 Score=122.92 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=81.0
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
++.+||++|+. .+++|.|.||||.++.|||+.+||.||++||||+.+....+...-.....|.+|.... ......+
T Consensus 213 ~g~VLLvrR~~---~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~-~~~~i~~ 288 (340)
T PRK05379 213 SGHVLLVRRRA---EPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSL-RGRTITH 288 (340)
T ss_pred CCEEEEEEecC---CCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCC-CCcEEEE
Confidence 45799999863 2357899999999999999999999999999999765421111111223444443211 1123456
Q ss_pred EEEEEEeCCcc---cccCcccceEeecHHhhccc---C-cchHHHHHhhh
Q 026251 197 FFKSQVIASNK---FTIGKCEDFVWVTKDELMEY---F-PESAEFLNKMI 239 (241)
Q Consensus 197 ffka~~~~G~~---~~~~e~~d~~Wvt~eEL~~~---l-p~~~~~v~~~l 239 (241)
+|.|.+..|.. ...+++.++.|++.+|+... + ......++.|+
T Consensus 289 ~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 289 AFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred EEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 67777665542 23357899999999999874 3 56667787775
No 54
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=2.7e-13 Score=106.00 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||+||...+ ...+|.|.||+|++++|||+.+||.||++||+|+.+..... . ...+.+.... ......++
T Consensus 13 ~~iLl~kr~~~~-~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~--~-~~~~~~~~~~----~~~~~~~~ 84 (129)
T cd04699 13 GRILILKRSKDE-RTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR--Y-PSTVTHEDSG----VYNVIYLV 84 (129)
T ss_pred CcEEEEEecCCC-CCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee--e-eEEEEEcCCC----EEEEEEEE
Confidence 468999886311 11378999999999999999999999999999997765321 1 1222222111 01234567
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
|.|....+.....+++.++.|++.+|+..+.
T Consensus 85 ~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 85 FVCEALSGAVKLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred EEeeecCCcccCChhheEEEEecHHHhhhhh
Confidence 7787776543333578899999999997666
No 55
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=4.1e-13 Score=108.44 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=71.4
Q ss_pred cEEEEEEccCCCCCCCCCceec-CccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHF-PEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~F-P~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+|+.+|...+ ....|.|.| |+|+++.|||+.+||.|||+||+|+.+...-+ .+++.+.+.+............+
T Consensus 17 ~~vLl~~R~~~~-~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~ 93 (144)
T cd04692 17 GYVLLQKRSANK-KTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDL--IPLGTFKIEYDHIGKLIDREFHH 93 (144)
T ss_pred CEEEEEecCCCC-CCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHe--EEeeEEEEeccccCCCccceEEE
Confidence 568888876322 245689999 59999999999999999999999997643111 22344444332110000112345
Q ss_pred EEEEEEeC--Cccccc-CcccceEeecHHhhcccC
Q 026251 197 FFKSQVIA--SNKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~--G~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|.... +.+.+. +++.++.|++.+|+.+.+
T Consensus 94 ~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 94 VYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred EEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 66666654 444333 478999999999998887
No 56
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.44 E-value=8.4e-13 Score=105.03 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=70.2
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeE-EEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+||+++...+ ..++.|.||+|+++.|||+.+||.||+.||+|+.+. ... ++.+.+. +. ..+..++
T Consensus 14 ~~iLl~~~~~~~--~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-----~~~~~~~-~~----~~~~~~~ 81 (137)
T cd03424 14 GKVVLVRQYRPP--VGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-----LGSFYPS-PG----FSDERIH 81 (137)
T ss_pred CeEEEEEeeecC--CCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-----EeeEecC-Cc----ccCccEE
Confidence 568888764211 235689999999999999999999999999999874 222 2222221 11 1124677
Q ss_pred EEEEEEeCCcc--cc-cCcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNK--FT-IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~--~~-~~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|....+.. .. ..++.++.|++.+|+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 82 LFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred EEEEEcccccccCCCCCCCeeEEEEecHHHHHHHH
Confidence 88888876542 22 2478999999999999877
No 57
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.3e-12 Score=104.08 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=68.0
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCe-EEEEEcceeeEEEEecCCCCC--CCCCce
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLS-HTYFVGNAPMGHMVMQPAEKM--PDVPSY 193 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i-~v~~vg~~P~g~~~y~~~~~~--~~~~g~ 193 (241)
+..+||+++.. .+.|.||||.++.|||+.+||.||++||+|..+ ... .+++.+...++... ....+.
T Consensus 10 ~~~vLLv~~~~------~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~~~~~~~~ 79 (131)
T cd04686 10 GDKILLLYTKR------YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI----EKFGTYTERRPWRKPDADIFHM 79 (131)
T ss_pred CCEEEEEEEcC------CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccc----eEEEEEEeeccccCCCCceeEE
Confidence 35689998752 368999999999999999999999999999975 221 23344332111111 011234
Q ss_pred EEEEEEEEEeCCcc--cccC-cc---cceEeecHHhhcccC
Q 026251 194 KQFFFKSQVIASNK--FTIG-KC---EDFVWVTKDELMEYF 228 (241)
Q Consensus 194 kvfffka~~~~G~~--~~~~-e~---~d~~Wvt~eEL~~~l 228 (241)
..+||.|.+..+.. .+.. +. -++.|++.+|+..-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 80 ISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred EEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 57899999875432 2221 11 258999999998755
No 58
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.43 E-value=1.2e-12 Score=116.29 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=76.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||+++.. ...|.|.||+|.++.|||+++||.||++||+|+++... ..++...+.++. ..+++
T Consensus 143 ~~iLL~rr~~----~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~----~~~~s~~~~~p~-------~lm~~ 207 (256)
T PRK00241 143 DEILLARHPR----HRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNL----RYVGSQPWPFPH-------SLMLG 207 (256)
T ss_pred CEEEEEEccC----CCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeee----EEEEeEeecCCC-------eEEEE
Confidence 4689998763 23689999999999999999999999999999976532 123333333332 36778
Q ss_pred EEEEEeCCccccc-CcccceEeecHHhhcccCcchHHHHHhh
Q 026251 198 FKSQVIASNKFTI-GKCEDFVWVTKDELMEYFPESAEFLNKM 238 (241)
Q Consensus 198 fka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~lp~~~~~v~~~ 238 (241)
|.|.+.+|++... +|+.+..|++.+|+.... ....+..+|
T Consensus 208 f~a~~~~~~~~~~~~Ei~~a~W~~~del~~lp-~~~sia~~l 248 (256)
T PRK00241 208 FHADYDSGEIVFDPKEIADAQWFRYDELPLLP-PSGTIARRL 248 (256)
T ss_pred EEEEecCCcccCCcccEEEEEEECHHHCcccC-CchHHHHHH
Confidence 8899887776554 478899999999998654 333444443
No 59
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=1.7e-12 Score=105.55 Aligned_cols=111 Identities=10% Similarity=-0.020 Sum_probs=71.5
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCC-CCC--Cce
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKM-PDV--PSY 193 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~-~~~--~g~ 193 (241)
++.+||++|...+ ...+|.|.||+|++++||++.+||.||+.||+|+.+........+++++.+.++... .+. .+.
T Consensus 12 ~~~vLl~rr~~~~-~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (143)
T cd04694 12 DQKLLLTRRASSL-RIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHH 90 (143)
T ss_pred CCEEEEEEECCCC-CCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCccccee
Confidence 4579999986311 235789999999999999999999999999999987642111123444444333210 000 122
Q ss_pred EEEEEEEEEeCC------ccccc-CcccceEeecHHhhcccC
Q 026251 194 KQFFFKSQVIAS------NKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 194 kvfffka~~~~G------~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
.++||.+....+ .+.+. .++++++|++.+++.+++
T Consensus 91 ~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~ 132 (143)
T cd04694 91 IVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVV 132 (143)
T ss_pred EEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHH
Confidence 344444433322 11121 489999999999999988
No 60
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.39 E-value=2e-12 Score=106.98 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=70.7
Q ss_pred EEEEEEccCCCCCCCCCceecC-ccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP-~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
.+||+||.. +.....|.|.+| +|+++.|||+++||.||++||+|+.+...- .. .+.+.|..+...........++
T Consensus 43 ~iLl~kR~~-~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~~~ 118 (165)
T cd02885 43 RLLLQRRAL-SKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLE--LV-LPRFRYRAPDDGGLVEHEIDHV 118 (165)
T ss_pred cEEEEeccC-CCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchh--hc-cceEEEEEEcCCCceeeEEEEE
Confidence 488888863 212356889997 899999999999999999999999876421 11 1333332211110001124577
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
|.|....+.....+++.++.|++.+|+.+.+
T Consensus 119 f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~ 149 (165)
T cd02885 119 FFARADVTLIPNPDEVSEYRWVSLEDLKELV 149 (165)
T ss_pred EEEEeCCCCCCCccceeEEEEECHHHHHHHH
Confidence 7787654433333588999999999999988
No 61
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.38 E-value=5.6e-12 Score=106.14 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=65.8
Q ss_pred cEEEEEEccCCCCCCCCCce-ecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIW-HFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W-~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+||.+|...+ ...+|.| .||||++++|||+.+||.|||+||+|+..... ..++.+.|..+. .....+
T Consensus 49 g~iLL~~R~~~~-~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~----~~~~~~~~~~~~-----~~~~~~ 118 (180)
T PRK15393 49 GKILVQRRTETK-DFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF----AEHGQFYFEDEN-----CRVWGA 118 (180)
T ss_pred CeEEEEEeCCCC-CCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc----eeceeEEecCCC-----ceEEEE
Confidence 457787775211 1234555 68999999999999999999999999974321 123444343221 112345
Q ss_pred EEEEEEeCCccccc-CcccceEeecHHhhccc
Q 026251 197 FFKSQVIASNKFTI-GKCEDFVWVTKDELMEY 227 (241)
Q Consensus 197 ffka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~ 227 (241)
+|.|.. .|...+. +++.++.|++.+|+.+.
T Consensus 119 ~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~ 149 (180)
T PRK15393 119 LFSCVS-HGPFALQEEEVSEVCWMTPEEITAR 149 (180)
T ss_pred EEEEEe-CCCCCCChHHeeEEEECCHHHHhhh
Confidence 666765 4544332 48899999999999976
No 62
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.38 E-value=5.3e-12 Score=96.15 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=74.0
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||+++.. . ..|.|.||+|.++.||++.+||.||+.||+|+.+... ...+.+.|..+.. ......++
T Consensus 12 ~~ill~kr~~---~-~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~---~~~~~~~~ 80 (123)
T cd02883 12 GRVLLVRRAD---S-PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL----RLLGVYEVESPDE---GEHAVVFV 80 (123)
T ss_pred CCEEEEEEcC---C-CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee----eEEEEEEeeccCC---CceEEEEE
Confidence 4578888762 1 3689999999999999999999999999999976532 1233444433321 23468889
Q ss_pred EEEEEeCCccc--ccCcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNKF--TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~~--~~~e~~d~~Wvt~eEL~~~l 228 (241)
|.|....+... ...+..++.|++.+|+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~ 113 (123)
T cd02883 81 FLARLVGGEPTLLPPDEISEVRWVTLDELPALA 113 (123)
T ss_pred EEEEeCCCCcCCCCCCccceEEEEcHHHCcccc
Confidence 99988876652 23467899999999999877
No 63
>PRK08999 hypothetical protein; Provisional
Probab=99.36 E-value=1.1e-11 Score=112.12 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=80.7
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||+||... ...+|.|+||+|+++.||++.+||.||++||+|..+... .+++.+.+.++.. ...+++
T Consensus 17 ~~vLL~kR~~~--~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~----~~l~~~~h~~~~~-----~~~i~~ 85 (312)
T PRK08999 17 GRILLARRPEG--KHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAA----RPLITVRHDYPDK-----RVRLDV 85 (312)
T ss_pred CeEEEEEecCC--CCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecc----eeEEEEEEEcCCC-----eEEEEE
Confidence 46999988631 235689999999999999999999999999999986642 2344455555432 257788
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC--cchHHHHHhh
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKM 238 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l--p~~~~~v~~~ 238 (241)
|.+....+.+. ..++.++.|++.+|+.++. +....+++.+
T Consensus 86 y~~~~~~~~~~-~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 86 RRVTAWQGEPH-GREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred EEEEEecCccc-CccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 88877766543 2367899999999999976 4555666654
No 64
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=1.1e-11 Score=99.50 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=68.2
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCe-EEEEEcceeeEEEE--ecCCCCCCCCCceE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLS-HTYFVGNAPMGHMV--MQPAEKMPDVPSYK 194 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i-~v~~vg~~P~g~~~--y~~~~~~~~~~g~k 194 (241)
..+||+++.. +.....+.|.+|+|.++.|||+.+||.||++||+|..+ .+. . .+.... |.+... .....
T Consensus 12 g~vLl~r~~~-~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~---~-~~~~~~~~f~~~~~---~~~~~ 83 (133)
T cd04685 12 DRVLLLRGDD-PDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLG---P-PVWRRDAAFTFLGV---DGRQE 83 (133)
T ss_pred CeEEEEEEeC-CCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcccccc---c-eEEEEEEEEEecCc---cceee
Confidence 3588887652 10014678999999999999999999999999999977 321 1 111111 222211 12246
Q ss_pred EEEEEEEEeCCccccc-------CcccceEeecHHhhccc
Q 026251 195 QFFFKSQVIASNKFTI-------GKCEDFVWVTKDELMEY 227 (241)
Q Consensus 195 vfffka~~~~G~~~~~-------~e~~d~~Wvt~eEL~~~ 227 (241)
.+||.|+..++.+... .++.+++|++.+||.+.
T Consensus 84 ~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 84 ERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 7899998875543211 24568999999999885
No 65
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.30 E-value=3.3e-11 Score=96.20 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=65.9
Q ss_pred cEEEEEEccCC-CCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCC--------CCCC
Q 026251 118 RLYLILYGETF-GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPA--------EKMP 188 (241)
Q Consensus 118 ~L~LLVkr~~~-g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~--------~~~~ 188 (241)
-.+||+++... -.....+.|+||+|+++.||++.+||.||+.||+|+++....+ .++.+.+... ....
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~~~~~---~l~~~~~~~~~~v~~fl~~~~~ 91 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFI---DLGSLKQSGGKVVHAWAVEADL 91 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcceeeEE---eEEEEECCCCeEEEEEEEEecC
Confidence 36888875210 0002467899999999999999999999999999997653221 1111111110 0000
Q ss_pred CCCceEEEEEEEEEeCCcccc--cCcccceEeec
Q 026251 189 DVPSYKQFFFKSQVIASNKFT--IGKCEDFVWVT 220 (241)
Q Consensus 189 ~~~g~kvfffka~~~~G~~~~--~~e~~d~~Wvt 220 (241)
+......++|.+.+.+|++.. .++.++++|++
T Consensus 92 d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 92 DITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred ChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 122467889999888877765 36899999997
No 66
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.28 E-value=2e-11 Score=102.90 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=69.0
Q ss_pred cEEEEEEccCCCCCCCCCceecC-ccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP-~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+||++|.. +.....|.|.+| +|+++.|||+.+||.||+.||+|+.+.... ...+.+.|..............+
T Consensus 46 g~vLL~rR~~-~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
T PRK03759 46 GRLLVTRRAL-SKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLE---LVLPDFRYRATDPNGIVENEVCP 121 (184)
T ss_pred CeEEEEEccC-CCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccc---cccceEEEEEecCCCceeeEEEE
Confidence 3588888752 211234677776 799999999999999999999999875211 11223333211111001112456
Q ss_pred EEEEEEeCCccccc-CcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|... |.+.+. +++.++.|++.+||.+.+
T Consensus 122 vf~~~~~-~~~~~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 122 VFAARVT-SALQPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred EEEEEEC-CCCCCChhHeeeEEEECHHHHHHHH
Confidence 7888876 444443 478999999999999887
No 67
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.28 E-value=3.1e-11 Score=101.86 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=70.4
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+|||++-..| .....|+||+|.+++||++++||.||++||+|..+..+ .+++.+.+. +.. ....++
T Consensus 58 ~~~vlLvrq~r~~--~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l----~~l~~~~~~-~~~----~~~~~~ 126 (185)
T PRK11762 58 DDTLLLIREYAAG--TERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQL----TFLKELSLA-PSY----FSSKMN 126 (185)
T ss_pred CCEEEEEEeecCC--CCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcce----EEEEEEecC-CCc----cCcEEE
Confidence 3468888875332 24567999999999999999999999999999987654 234443322 111 124777
Q ss_pred EEEEEEeCCccccc--CcccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTI--GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~--~e~~d~~Wvt~eEL~~~l 228 (241)
+|.|....+..... .+..+..|++.+|+.+.+
T Consensus 127 ~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~ 160 (185)
T PRK11762 127 IVLAEDLYPERLEGDEPEPLEVVRWPLADLDELL 160 (185)
T ss_pred EEEEEccccccCCCCCCceeEEEEEcHHHHHHHH
Confidence 77787664432221 245688999999998877
No 68
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.25 E-value=3e-11 Score=99.47 Aligned_cols=103 Identities=15% Similarity=0.032 Sum_probs=68.2
Q ss_pred cEEEEEEccCCCCCCCCCceecC-ccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP-~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+||+||.. +.....|.|.+| +|+++.|| .+||.||++||+|+.+...-+.....-.+.+.++.. .....+
T Consensus 39 g~vLl~kR~~-~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g----~~~~~~ 111 (158)
T TIGR02150 39 GQLLLQRRAL-SKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG----EHELCP 111 (158)
T ss_pred CeEEEEeccC-CCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC----cEEEEE
Confidence 3588888762 212346899997 79999999 399999999999998754211111111222222211 124557
Q ss_pred EEEEEEeCCcccccC-cccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTIG-KCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~~-e~~d~~Wvt~eEL~~~l 228 (241)
+|.|.... .+.+++ |+.++.|++.+||.+.+
T Consensus 112 ~f~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~~ 143 (158)
T TIGR02150 112 VFFARAPV-PLNPNPEEVAEYRWVSLEELKEIL 143 (158)
T ss_pred EEEEecCC-cccCChhHeeeEEEeCHHHHHHHH
Confidence 77777653 444443 89999999999999988
No 69
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.21 E-value=1.5e-10 Score=91.40 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=61.7
Q ss_pred EEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEEE
Q 026251 120 YLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFK 199 (241)
Q Consensus 120 ~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfffk 199 (241)
+||++|.. ....|.|.||+|+++.|||+++||.||+.||+|+.+....++ .+. .|.++. ....+|+|.
T Consensus 17 ~lL~~r~~---~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~--~~~--~~~~~~-----~~~~~~~~~ 84 (118)
T cd04674 17 LLVIRRGI---EPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIR--LFD--VRSAPD-----GTLLVFGLL 84 (118)
T ss_pred EEEEEeec---CCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEE--EEE--EEecCC-----CeEEEEEEE
Confidence 45555542 235689999999999999999999999999999987643222 122 233332 125678887
Q ss_pred EEEeCCcc-cc--cCcccceEeecHHh
Q 026251 200 SQVIASNK-FT--IGKCEDFVWVTKDE 223 (241)
Q Consensus 200 a~~~~G~~-~~--~~e~~d~~Wvt~eE 223 (241)
+....+.. .. ..|..++.|++...
T Consensus 85 ~~~~~~~~~~~~~~~E~~~~~~~~~~~ 111 (118)
T cd04674 85 PERRAADLPPFEPTDETTERAVVTAPS 111 (118)
T ss_pred eccccccCCCCCCCcceeeEEEccCCc
Confidence 77665543 22 24677888886543
No 70
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.21 E-value=1.3e-10 Score=91.69 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=67.5
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
+..+||++++ .+.|+||+|+++.||++.+||.||+.||+|..+... .+++.+.+.... .+....
T Consensus 10 ~~~vLl~~~~-------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~----~~l~~~~~~~~~-----~~~~~~ 73 (118)
T cd04665 10 DDGLLLVRHK-------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSL----TLVGYYQVDLFE-----SGFETL 73 (118)
T ss_pred CCEEEEEEeC-------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCce----EEEEEEEecCCC-----CcEEEE
Confidence 3568888864 357999999999999999999999999999976331 345655543322 123556
Q ss_pred EEEEEEeCCccc-ccCcccceEeecHHhhc
Q 026251 197 FFKSQVIASNKF-TIGKCEDFVWVTKDELM 225 (241)
Q Consensus 197 ffka~~~~G~~~-~~~e~~d~~Wvt~eEL~ 225 (241)
+|.|....+... ...++....|++.+-..
T Consensus 74 ~y~a~~~~~~~~~~~~E~~~~~~~~~~~~~ 103 (118)
T cd04665 74 VYPAVSAQLEEKASYLETDGPVLFKNEPEE 103 (118)
T ss_pred EEEEEEEecccccccccccCcEEeccCCcc
Confidence 677877766543 44588999999876554
No 71
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.15 E-value=2.3e-10 Score=97.04 Aligned_cols=143 Identities=9% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCcCCCCCCCc--ccccCCCcchhhccCCc-EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeE
Q 026251 91 MEYVPAPRITE--TDKTNDRKSLQRALDRR-LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSH 167 (241)
Q Consensus 91 ~~~~p~~r~T~--aD~~~d~~Sl~R~l~~~-L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~ 167 (241)
.+....+-+|- -|..++.-.+.+.-++. .+|+++|+ ..|.|.||||.+++||++.+||.|||.||+|+++.
T Consensus 19 ~n~~~~~~vtr~~~~~~~~~~i~~~~~~~~l~vLl~~r~------~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~ 92 (186)
T cd03670 19 PNHAADPIVTRWKRDSSGDGSIHPKSGKPILQFVAIKRP------DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ 92 (186)
T ss_pred CchhcCEEEEEEEEcCCCCEEEEecCCCCeeEEEEEEeC------CCCcCcCCeeeccCCCCHHHHHHHHHHHHHccccc
Confidence 34444444553 22234444444443333 58889885 35889999999999999999999999999976542
Q ss_pred EEEE------------cceeeEEEEecCCCCCC---CCCceEEEEEEEE---EeC-CcccccCcccceEeecHHhhcccC
Q 026251 168 TYFV------------GNAPMGHMVMQPAEKMP---DVPSYKQFFFKSQ---VIA-SNKFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 168 v~~v------------g~~P~g~~~y~~~~~~~---~~~g~kvfffka~---~~~-G~~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
.... ....+++|.....+... .-+....++|.+. .++ ..+...++..+.+|++.+++....
T Consensus 93 ~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~ 172 (186)
T cd03670 93 KSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLY 172 (186)
T ss_pred ccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccc
Confidence 2110 00112232211111111 0112344555442 111 122223478899999999998655
Q ss_pred cchHHHHHhhh
Q 026251 229 PESAEFLNKMI 239 (241)
Q Consensus 229 p~~~~~v~~~l 239 (241)
.....++++++
T Consensus 173 ~dH~~Il~~a~ 183 (186)
T cd03670 173 ANHSQFLKKVA 183 (186)
T ss_pred cCHHHHHHHHH
Confidence 55567777765
No 72
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.14 E-value=1.9e-10 Score=96.42 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=70.5
Q ss_pred cEEEEEEccCCCCCCCCCce-ecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCC-CCCCCCCceEE
Q 026251 118 RLYLILYGETFGAPGGKPIW-HFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPA-EKMPDVPSYKQ 195 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W-~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~-~~~~~~~g~kv 195 (241)
..+||.||.. ......|.| .+|+|+++.|||+.+||.||+.||+|+.+...-. -.++|.+.|.+. ... ......+
T Consensus 48 ~~l~lqrRs~-~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~-l~~~g~~~~~~~~~~~-~~~~e~~ 124 (180)
T cd03676 48 LRIWIPRRSP-TKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ-LKPVGVVSYLREGEAG-GLQPEVE 124 (180)
T ss_pred eEEEEEeccC-CCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh-ceeccEEEEEEEcCCC-cEeeeEE
Confidence 4566666653 313467899 6999999999999999999999999997653110 012343333332 111 0112356
Q ss_pred EEEEEEEeCC-ccccc-CcccceEeecHHhhcccC
Q 026251 196 FFFKSQVIAS-NKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 196 fffka~~~~G-~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
++|.+.+-.+ .+.++ +|+.++.|++.+|+.+.+
T Consensus 125 ~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 125 YVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred EEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 7787775322 22333 479999999999999876
No 73
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.14 E-value=4.8e-10 Score=92.64 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=67.3
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 198 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 198 (241)
.+|++++. ...|+||+|++++|||+.+||.||+.||+|..+..+ .++|.+....+. ......+|
T Consensus 36 ~~LL~~~~-------~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~----~~lg~~~~~~~~-----~~~~~~vf 99 (156)
T TIGR02705 36 QWLLTEHK-------RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL----HYIGQYEVEGES-----TDFVKDVY 99 (156)
T ss_pred EEEEEEEc-------CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeee----EEEEEEEecCCC-----cEEEEEEE
Confidence 57888764 235999999999999999999999999999976543 245555443221 12467778
Q ss_pred EEEEeCCcccccCcccceE-eecHHhhcccC
Q 026251 199 KSQVIASNKFTIGKCEDFV-WVTKDELMEYF 228 (241)
Q Consensus 199 ka~~~~G~~~~~~e~~d~~-Wvt~eEL~~~l 228 (241)
.|....+... ++..+.. +++.+|+.+.+
T Consensus 100 ~A~~~~~~~~--~e~~E~~~~~~~~~~~~~~ 128 (156)
T TIGR02705 100 FAEVSALESK--DDYLETKGPVLLQEIPDII 128 (156)
T ss_pred EEEEeccccC--CCceeeEeEEEHHHHHHHH
Confidence 8988866533 4556666 79999997766
No 74
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.11 E-value=4.8e-10 Score=89.57 Aligned_cols=42 Identities=19% Similarity=0.063 Sum_probs=35.4
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSH 167 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~ 167 (241)
.+|+++.+ .+.|+||||++++|||+.+||.||++||+|..+.
T Consensus 15 ~ll~~r~~-------~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 15 ELLVFEHP-------LAGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred EEEEEEcC-------CCcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 55666543 2459999999999999999999999999999863
No 75
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.09 E-value=4.3e-10 Score=95.26 Aligned_cols=104 Identities=8% Similarity=0.016 Sum_probs=70.9
Q ss_pred CCcEEEEEEccCCCC---CCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCc
Q 026251 116 DRRLYLILYGETFGA---PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPS 192 (241)
Q Consensus 116 ~~~L~LLVkr~~~g~---~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g 192 (241)
++..+|||++-+.+- ......|+||+|+++.|||+++||.|||.||||...... .+++.+ |..+. ...
T Consensus 55 ~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~----~~~~~~-~~~~g----~~~ 125 (185)
T TIGR00052 55 KKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNL----RKLLSF-YSSPG----GVT 125 (185)
T ss_pred CCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecce----EEEEEE-EcCCC----CCc
Confidence 345788888753220 013467999999999999999999999999999977542 123332 22121 123
Q ss_pred eEEEEEEEEEeCCccc-----ccCcccceEeecHHhhcccC
Q 026251 193 YKQFFFKSQVIASNKF-----TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 193 ~kvfffka~~~~G~~~-----~~~e~~d~~Wvt~eEL~~~l 228 (241)
..+++|.|.+..+... ..++..+..|++.+|+.+.+
T Consensus 126 ~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~ 166 (185)
T TIGR00052 126 ELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWI 166 (185)
T ss_pred EEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHH
Confidence 5788999987654221 11245578999999999887
No 76
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.03 E-value=3.6e-09 Score=90.07 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=64.8
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCC-CCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~g-Etl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
.+|+++|.... ....|.|+||||++++| |++.+||.||+.||+|.....+- .+|.+...++. .|..+..
T Consensus 45 ~vLl~~R~~~~-r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~----~lg~l~~~~~~-----~~~~~~~ 114 (190)
T PRK10707 45 TLLLTQRSIHL-RKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVE----VIGVLPPVDSS-----TGYQVTP 114 (190)
T ss_pred EEEEEEeCCcc-cCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceE----EEEEeeeeecc-----CCcEEEE
Confidence 57888755211 23568999999999975 78999999999999999765431 12322211111 1345555
Q ss_pred EEEEEeCCc-cccc-CcccceEeecHHhhcccC
Q 026251 198 FKSQVIASN-KFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~-~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
|.+.+..+. .... +|+.+..|++.+|+.+..
T Consensus 115 ~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 115 VVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 555544332 2222 378889999999987653
No 77
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.01 E-value=5.3e-09 Score=80.18 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=71.3
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
..+||.||+.. .-.+|.|+||+++++.+|+..++..|++.++.+. . ..+++.++|.++.. ...+.+
T Consensus 14 ~~~ll~kR~~~--gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~H~fth~-----~~~~~~ 79 (118)
T cd03431 14 GRVLLEKRPEK--GLLAGLWEFPSVEWEEEADGEEALLSALKKALRL--S-----LEPLGTVKHTFTHF-----RLTLHV 79 (118)
T ss_pred CeEEEEECCCC--CCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc--c-----cccceeEEEecCCe-----EEEEEE
Confidence 56999999742 2468899999999999999999999999888764 1 12345566666643 257888
Q ss_pred EEEEEeCCcccccCcccceEeecHHhhcccC-cc
Q 026251 198 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 230 (241)
Q Consensus 198 fka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~ 230 (241)
|.|....|. .+..++.|++.+|+.++- |.
T Consensus 80 ~~~~~~~~~----~~~~~~~W~~~eel~~~~~p~ 109 (118)
T cd03431 80 YLARLEGDL----LAPDEGRWVPLEELDEYALPT 109 (118)
T ss_pred EEEEEeCCC----cCccccEEccHHHHhhCCCCH
Confidence 888877653 235689999999999987 53
No 78
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.96 E-value=7.5e-09 Score=88.88 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=67.3
Q ss_pred cEEEEEEccCCCCCC---CCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceE
Q 026251 118 RLYLILYGETFGAPG---GKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYK 194 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~---~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~k 194 (241)
..+|||+|-+++-.. ..-.|+||+|.+++||++.+||.|||.||+|.....+ .+++.+ |..|.. ....
T Consensus 62 ~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~----~~l~~~-~~spg~----~~e~ 132 (202)
T PRK10729 62 DEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRT----KPVLSY-LASPGG----TSER 132 (202)
T ss_pred CEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEE----EEEEEE-EcCCCc----CceE
Confidence 357778765433100 1246999999999999999999999999999976543 234333 211211 2358
Q ss_pred EEEEEEEEeC----Cc-ccc-cCcccceEeecHHhhcccC
Q 026251 195 QFFFKSQVIA----SN-KFT-IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 195 vfffka~~~~----G~-~~~-~~e~~d~~Wvt~eEL~~~l 228 (241)
+++|.|.... +. ... ..|..+..|++.+|+.+.+
T Consensus 133 ~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~ 172 (202)
T PRK10729 133 SSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV 172 (202)
T ss_pred EEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHH
Confidence 8899898521 11 111 1244578999999999877
No 79
>PLN02709 nudix hydrolase
Probab=98.88 E-value=1.7e-08 Score=87.77 Aligned_cols=98 Identities=6% Similarity=-0.076 Sum_probs=68.4
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCC-CCHHHHHHHHHHHHhCCCeE-EEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~g-Etl~~aAeRel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
.+|+++|...- ....|.|.||||++++| +++.+||.||+.||+|+... +..+|.-+. + +. ..|..|.
T Consensus 52 ~vLl~~Rs~~l-~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~--~---~t-----~sg~~V~ 120 (222)
T PLN02709 52 RVILTKRSSTL-SSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEP--F---VN-----KKGMSVA 120 (222)
T ss_pred EEEEEEcCCCC-CCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCC--e---EC-----CCCCEEE
Confidence 48888886321 24789999999999997 57999999999999999764 344443221 1 11 1245777
Q ss_pred EEEEEEeCC---ccccc-CcccceEeecHHhhccc
Q 026251 197 FFKSQVIAS---NKFTI-GKCEDFVWVTKDELMEY 227 (241)
Q Consensus 197 ffka~~~~G---~~~~~-~e~~d~~Wvt~eEL~~~ 227 (241)
-|.+.+-.. .+.+. +|+.+.-||+.+++.+-
T Consensus 121 P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 121 PVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred EEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 777766431 22233 48999999999998653
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.83 E-value=3.2e-08 Score=76.51 Aligned_cols=104 Identities=21% Similarity=0.259 Sum_probs=62.1
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHH-HHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRK-CAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~-aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 196 (241)
..+|++++.. ..+.|.||||+++.||++.+ ||.||+.||+|+.+.. .....++.+.................
T Consensus 24 ~~vl~~~~~~-----~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (161)
T COG0494 24 GEVLLAQRRD-----DGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKD--ERLELLGEFPPSPGDGSSVGGREHRV 96 (161)
T ss_pred CEEeEEEccc-----cCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeee--ecceeeeeccCcccCcccccceEEEE
Confidence 6788888752 12589999999999999988 9999999999998763 01122333322211110000011222
Q ss_pred EEEEEE---eCCcccc----cCcccceEeecHHhhcccC
Q 026251 197 FFKSQV---IASNKFT----IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~---~~G~~~~----~~e~~d~~Wvt~eEL~~~l 228 (241)
++.+.. ....... ..++.++.|+..+++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 135 (161)
T COG0494 97 FFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV 135 (161)
T ss_pred EEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence 222221 1111111 1367899999999998887
No 81
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.79 E-value=1.6e-08 Score=81.78 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=64.0
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEE
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 198 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 198 (241)
-||||... .....|.||+|.||++|+..+||.||..||.|+.-.. +..+.|+..+........ .|.+.|
T Consensus 25 eVLlvsSs-----~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l---~~~~~g~~~~~~~~~~~~---~k~~~~ 93 (145)
T KOG2839|consen 25 EVLLVSSS-----KKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKL---GRLLGGFEDFLSKKHRTK---PKGVMY 93 (145)
T ss_pred EEEEEecC-----CCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeee---eccccchhhccChhhccc---ccceee
Confidence 79999754 2356799999999999999999999999999996543 233445554443332211 122333
Q ss_pred EEEE---eCCcccccCcccceEeecHHhhcccC
Q 026251 199 KSQV---IASNKFTIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 199 ka~~---~~G~~~~~~e~~d~~Wvt~eEL~~~l 228 (241)
.-.. +.--+....++....|++.+|..+..
T Consensus 94 ~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~ 126 (145)
T KOG2839|consen 94 VLAVTEELEDWPESEHEFREREWLKLEDAIELC 126 (145)
T ss_pred hhhhhhhcccChhhhcccceeEEeeHHHHHHHH
Confidence 1111 11112222357899999999987766
No 82
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.61 E-value=3.6e-07 Score=77.84 Aligned_cols=102 Identities=6% Similarity=-0.000 Sum_probs=66.7
Q ss_pred CcEEEEEEccCCCC----CCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCc
Q 026251 117 RRLYLILYGETFGA----PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPS 192 (241)
Q Consensus 117 ~~L~LLVkr~~~g~----~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g 192 (241)
+..+|||+|=+++- ...+-.|+||.|.+++| ++.+||.|||.||||.....+. +++.+ |..|.. ..
T Consensus 57 ~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~----~l~~~-~~spG~----s~ 126 (191)
T PRK15009 57 KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVR----KLFEL-YMSPGG----VT 126 (191)
T ss_pred CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEE----EeeEE-EcCCcc----cC
Confidence 33588887654320 00334699999999976 6999999999999999765432 23322 222222 23
Q ss_pred eEEEEEEEEEeCC-ccc----ccCcccceEeecHHhhcccC
Q 026251 193 YKQFFFKSQVIAS-NKF----TIGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 193 ~kvfffka~~~~G-~~~----~~~e~~d~~Wvt~eEL~~~l 228 (241)
.++++|.|..... ... ..+|..+..|++.+|+.+.+
T Consensus 127 e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i 167 (191)
T PRK15009 127 ELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMI 167 (191)
T ss_pred cEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHH
Confidence 5788888986421 111 12355689999999999887
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.53 E-value=1.2e-06 Score=77.42 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=60.1
Q ss_pred EEEEEEccCCCCCCCCCce-----ecCccccCCCC----------C---HHHHHHHHHHHHhCCCeEEEEEc-ceeeEEE
Q 026251 119 LYLILYGETFGAPGGKPIW-----HFPEKVYESEE----------S---LRKCAECALQSVLGDLSHTYFVG-NAPMGHM 179 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W-----~FP~Gkve~gE----------t---l~~aAeRel~Ee~G~~i~v~~vg-~~P~g~~ 179 (241)
.+||-||...+ ....|.| ..|++..+.|| + ..+||.|||.||+|+......+. -.+++.+
T Consensus 69 ~lLLQkRs~~K-~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~ 147 (247)
T PLN02552 69 ELLLQQRAATK-VTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRL 147 (247)
T ss_pred eEEEEEecCCC-CCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEE
Confidence 57777775321 2356789 55666544433 2 78999999999999985421100 1223333
Q ss_pred EecCCCC-------CCCCCceEEEEEEEEEe-CCccccc-CcccceEeecHHhhcccC
Q 026251 180 VMQPAEK-------MPDVPSYKQFFFKSQVI-ASNKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 180 ~y~~~~~-------~~~~~g~kvfffka~~~-~G~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
.|..+.. .....-...+||. ... .+.+.++ +|+.++.|++.+||.+.+
T Consensus 148 ~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~~ 204 (247)
T PLN02552 148 HYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEMM 204 (247)
T ss_pred EEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHHH
Confidence 4433221 1000001112222 223 3355554 489999999999999873
No 84
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.50 E-value=9.2e-08 Score=85.37 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=70.4
Q ss_pred EEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEE-EEEcceeeEEEEecCCCCCCCCCceEEEEE
Q 026251 120 YLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHT-YFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 198 (241)
Q Consensus 120 ~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v-~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 198 (241)
+||.++++ ...|....=.|=||+|||+++|..||+.||+|+.+.- .+++.-| +.+| +.-+.-|
T Consensus 157 ilLa~~~~----h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQP-----WPfP-------~SLMigf 220 (279)
T COG2816 157 ILLARHPR----HFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQP-----WPFP-------HSLMLGF 220 (279)
T ss_pred eeecCCCC----CCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccC-----CCCc-------hhhhhhh
Confidence 77777652 3477888888999999999999999999999997653 2222222 2233 2356677
Q ss_pred EEEEeCCcccccC-cccceEeecHHhhcccCc
Q 026251 199 KSQVIASNKFTIG-KCEDFVWVTKDELMEYFP 229 (241)
Q Consensus 199 ka~~~~G~~~~~~-e~~d~~Wvt~eEL~~~lp 229 (241)
.|.+.+|++.... |..|.+|.|++|+...+|
T Consensus 221 ~aey~sgeI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 221 MAEYDSGEITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred eeeeccccccCCcchhhhccccCHhHHhhhcC
Confidence 8999999976653 899999999999666663
No 85
>PLN03143 nudix hydrolase; Provisional
Probab=98.43 E-value=1.6e-06 Score=78.47 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=62.7
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCC-CCCHHHHHHHHHHHHhCCCeE---EEEEc---ceeeEEEEecCCCCCCCC
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYES-EESLRKCAECALQSVLGDLSH---TYFVG---NAPMGHMVMQPAEKMPDV 190 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~-gEtl~~aAeRel~Ee~G~~i~---v~~vg---~~P~g~~~y~~~~~~~~~ 190 (241)
..++||+|-+++ .+.-.|+||+|.+++ +|++.+||.||++||+|..+. ...++ +...|...|..+...
T Consensus 143 ~~VlLVrQ~R~p--vg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~--- 217 (291)
T PLN03143 143 TYAVLTEQVRVP--VGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGC--- 217 (291)
T ss_pred EEEEEEEeEecC--CCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCcc---
Confidence 347777765432 234579999999997 489999999999999999753 21121 000011222222222
Q ss_pred CceEEEEEEEEEeC---------Cccc-c--cCcccceEeecHHhhcccC
Q 026251 191 PSYKQFFFKSQVIA---------SNKF-T--IGKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 191 ~g~kvfffka~~~~---------G~~~-~--~~e~~d~~Wvt~eEL~~~l 228 (241)
...+.+|.|.-.- +... . ..|..+..|++.+|+.+..
T Consensus 218 -dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~ 266 (291)
T PLN03143 218 -DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT 266 (291)
T ss_pred -CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 1345555554331 1111 1 1255678999999998877
No 86
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.40 E-value=4.8e-07 Score=81.64 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=62.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEec-CCCCCCCCCceEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ-PAEKMPDVPSYKQF 196 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~-~~~~~~~~~g~kvf 196 (241)
...||.+++++ ..|.|..|.|-+|+|||++||+.||+.||+|++++... +....-.. +|.. .-++
T Consensus 200 ~~~LL~R~~r~----~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~----~~asQPWP~~p~S------LMIg 265 (345)
T KOG3084|consen 200 KHALLGRQKRY----PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVIS----YVASQPWPLMPQS------LMIG 265 (345)
T ss_pred CEeeeecccCC----CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEe----eeecCCCCCCchH------HHHH
Confidence 35777777643 47899999999999999999999999999999876521 11111111 1110 1112
Q ss_pred EEEEEEeCCccccc-C-cccceEeecHHhhcccC
Q 026251 197 FFKSQVIASNKFTI-G-KCEDFVWVTKDELMEYF 228 (241)
Q Consensus 197 ffka~~~~G~~~~~-~-e~~d~~Wvt~eEL~~~l 228 (241)
++.-.-+++...+. + |..|.+|.+.+|+.+-+
T Consensus 266 c~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL 299 (345)
T KOG3084|consen 266 CLALAKLNGKISVDKDLELEDAQWFDREEVKSAL 299 (345)
T ss_pred HHHHHhhCCccccCcchhhhhcccccHHHHHHHH
Confidence 22111122444332 2 78899999999998766
No 87
>PLN02791 Nudix hydrolase homolog
Probab=98.36 E-value=2.5e-06 Score=85.93 Aligned_cols=108 Identities=6% Similarity=-0.005 Sum_probs=65.9
Q ss_pred cEEEEEEccCCCCCCCCCceec-CccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCC-CCceEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHF-PEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPD-VPSYKQ 195 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~F-P~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~-~~g~kv 195 (241)
..+||-||.... ....|.|.+ |+|++..|||..+||.|||.||+|+.+....+ ..++.+.+........ ....-.
T Consensus 45 gelLLQkRS~~K-~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l--~~l~~~~~~~~~~~g~~~e~E~~ 121 (770)
T PLN02791 45 QELLLQRRADCK-DSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAF--ELLFVFLQECVINDGKFINNEYN 121 (770)
T ss_pred CeEEEEEecCCC-CCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhhe--eeeeeEEEEeeccCCCcceeeEE
Confidence 346777765322 346889999 79999999999999999999999997532111 1123222211000000 001123
Q ss_pred EEEEEEEeCC----ccccc-CcccceEeecHHhhcccC
Q 026251 196 FFFKSQVIAS----NKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 196 fffka~~~~G----~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
..|.+..... ++.++ +|+.++.|++.+|+.+.+
T Consensus 122 ~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 122 DVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred EEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHH
Confidence 3455554433 22343 489999999999998554
No 88
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.35 E-value=2.4e-06 Score=66.11 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=60.1
Q ss_pred CCcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEE
Q 026251 116 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 195 (241)
Q Consensus 116 ~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 195 (241)
++..|||.||+..| =-+|.|+||...++...+ .+++.+.+.+..|..+... .+++.++|.++.. ...+
T Consensus 7 ~~~~~Ll~kRp~~g--ll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~----~~~~~v~H~fSH~-----~~~~ 74 (114)
T PF14815_consen 7 SQGRVLLEKRPEKG--LLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV----EPLGTVKHVFSHR-----RWTI 74 (114)
T ss_dssp TTSEEEEEE--SSS--TTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-----S-SEEEEEE-SSE-----EEEE
T ss_pred eCCEEEEEECCCCC--hhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh----eecCcEEEEccce-----EEEE
Confidence 45679999997422 367899999999884444 6666667767777665542 2567777776643 3578
Q ss_pred EEEEEEEeCCcccccCcccceEeecHHhhcccC-cc
Q 026251 196 FFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 230 (241)
Q Consensus 196 fffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~ 230 (241)
.+|.+.+..+... ...++.|++.+|+.++- |.
T Consensus 75 ~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~~~p~ 107 (114)
T PF14815_consen 75 HVYEVEVSADPPA---EPEEGQWVSLEELDQYPLPT 107 (114)
T ss_dssp EEEEEEEE-SS-------TTEEEEEGGGGGGS---H
T ss_pred EEEEEEecCCCCC---CCCCcEEEEHHHHhhCCCCH
Confidence 8888888866543 35799999999999987 75
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=3.6e-05 Score=69.29 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=65.6
Q ss_pred cEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 118 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 118 ~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
+.+|+|+-+ .|.....|.|.||+|.+++||.+-.+|.||++||+|++.. |+. +..++-..+..-..+..-.|
T Consensus 127 ~eVlVv~e~-d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~e--f~e-----Vla~r~~H~~~~~~~ksd~f 198 (295)
T KOG0648|consen 127 KEVLVVQEK-DGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTE--FVE-----VLAFRRAHNATFGLIKSDMF 198 (295)
T ss_pred ceeEEEEec-ccceeecccccccceEecccccchhhhhhhhHHHhCcchh--hhh-----HHHHHhhhcchhhcccccce
Confidence 478888754 2323467899999999999999999999999999998443 321 11111100000001123356
Q ss_pred EEEEEeCCccccc---CcccceEeecHHhhcccC
Q 026251 198 FKSQVIASNKFTI---GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G~~~~~---~e~~d~~Wvt~eEL~~~l 228 (241)
|.|.+-.-.+.++ .++..++|+..+|.....
T Consensus 199 ~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 199 FTCELRPRSLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred eEEEeeccccccchhHHHHHHHhcccHHHhhccc
Confidence 7787754332222 267788999999887766
No 90
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.47 E-value=0.00038 Score=55.52 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=70.9
Q ss_pred hhhccCCc-EEEEEEccCCCC---CCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCC
Q 026251 111 LQRALDRR-LYLILYGETFGA---PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEK 186 (241)
Q Consensus 111 l~R~l~~~-L~LLVkr~~~g~---~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~ 186 (241)
|+|.-+.. .+|||.-. |- ..+.|.|+.|.|.+..||...-||.||..||+|+.+.-- ..-+|.++-
T Consensus 10 lYR~~aG~v~VLLvHPG--GPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP---~~~lG~~kQ----- 79 (161)
T COG4119 10 LYRARAGVVDVLLVHPG--GPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGP---RIDLGSLKQ----- 79 (161)
T ss_pred EEEecCCCEEEEEecCC--CCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCc---hhhhhhhcc-----
Confidence 34444444 58888532 10 135688999999999999999999999999999977421 112333321
Q ss_pred CCCCCceEEEEEE--EEE----------------eCCcccccCcccceEeecHHhhcccC-cchHHHHHhh
Q 026251 187 MPDVPSYKQFFFK--SQV----------------IASNKFTIGKCEDFVWVTKDELMEYF-PESAEFLNKM 238 (241)
Q Consensus 187 ~~~~~g~kvfffk--a~~----------------~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~~~~~v~~~ 238 (241)
.-|..|..|- |.+ -+|....-+++....|.+..|....+ ...+.++.++
T Consensus 80 ---~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfldrL 147 (161)
T COG4119 80 ---SGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFLDRL 147 (161)
T ss_pred ---CCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhccchHHHHH
Confidence 1122333332 222 12222222478899999999998877 5555565543
No 91
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.0008 Score=58.31 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=34.6
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhC
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG 163 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G 163 (241)
.++.||++ +.|.|.+|||-+++||.+-.++.||+.||.=
T Consensus 140 e~vavkr~------d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRP------DNGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecC------CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 37778875 5889999999999999999999999999863
No 92
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=96.95 E-value=0.0019 Score=55.14 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=47.7
Q ss_pred CcCCCCCCCcccccCC----CcchhhccCCcEEEEEEccCCCCCCCCC-ceecCccccCCCCCHHHHHHHHHHHHhCCCe
Q 026251 92 EYVPAPRITETDKTND----RKSLQRALDRRLYLILYGETFGAPGGKP-IWHFPEKVYESEESLRKCAECALQSVLGDLS 166 (241)
Q Consensus 92 ~~~p~~r~T~aD~~~d----~~Sl~R~l~~~L~LLVkr~~~g~~~~~~-~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i 166 (241)
.|.-+-|.|.-....| ..-|++-. ..-++|+||= . .+.++ --+||.|-++.||+..+||.|||+||+|..-
T Consensus 59 ~wes~~Rttr~ea~~dgVaIl~il~~dG-~~~ivL~kQf--R-pP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~g 134 (225)
T KOG3041|consen 59 DWESVQRTTRVEARADGVAILAILESDG-KPYIVLVKQF--R-PPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKG 134 (225)
T ss_pred eeehheecccccccCCeEEEEEEEecCC-cEEEEEEEee--c-CCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccc
Confidence 3455556664333333 23344411 2245556543 2 34444 5899999999999999999999999999975
Q ss_pred EEE
Q 026251 167 HTY 169 (241)
Q Consensus 167 ~v~ 169 (241)
++.
T Consensus 135 kv~ 137 (225)
T KOG3041|consen 135 KVD 137 (225)
T ss_pred eee
Confidence 553
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=96.88 E-value=0.0036 Score=52.46 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=65.9
Q ss_pred CCCcchhhccCCc------EEEEEEccCCCCCCCCCceecCc-cccCCCCCHHHHHHHHHHHHhCCCeEEEE-EcceeeE
Q 026251 106 NDRKSLQRALDRR------LYLILYGETFGAPGGKPIWHFPE-KVYESEESLRKCAECALQSVLGDLSHTYF-VGNAPMG 177 (241)
Q Consensus 106 ~d~~Sl~R~l~~~------L~LLVkr~~~g~~~~~~~W~FP~-Gkve~gEtl~~aAeRel~Ee~G~~i~v~~-vg~~P~g 177 (241)
.|.-.|+|.-+-. ..||.||.... +--.|.|.=-- |+=-+|||...||.|-|..|+|+....+- ....|
T Consensus 27 ~d~~~LHrAFS~~lFne~g~LLltrRA~~K-~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~-- 103 (185)
T COG1443 27 GDTPRLHRAFSSFLFNERGQLLLTRRALSK-KTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILP-- 103 (185)
T ss_pred cccHHHHhhhheeEECCCCceeeehhhhhc-ccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcccccc--
Confidence 4444478877644 45666664211 22344553110 22238999999999999999999876321 11112
Q ss_pred EEEecCCCCCC--CCCceEEEEEEEEEeCCccccc-CcccceEeecHHhhcccC
Q 026251 178 HMVMQPAEKMP--DVPSYKQFFFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 178 ~~~y~~~~~~~--~~~g~kvfffka~~~~G~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
.+.|+-+.... +..=--|++++... .+... +|+.+|+||+++++.+.+
T Consensus 104 rf~YrA~~~~~~~E~Eic~V~~~~~~~---~~~~npdEV~~~~wv~~e~l~~~~ 154 (185)
T COG1443 104 RFRYRAADPDGIVENEICPVLAARLDS---ALDPNPDEVMDYRWVSPEDLKEMV 154 (185)
T ss_pred ceEEeccCCCCcceeeeeeEEEEeecC---CCCCChHHhhheeccCHHHHHHhh
Confidence 23444322211 00001344444432 33332 589999999999999988
No 94
>PLN02839 nudix hydrolase
Probab=96.55 E-value=0.0046 Score=57.60 Aligned_cols=94 Identities=9% Similarity=0.000 Sum_probs=61.1
Q ss_pred CCCce-ecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEEEEEEeCCc-cccc
Q 026251 133 GKPIW-HFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASN-KFTI 210 (241)
Q Consensus 133 ~~~~W-~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfffka~~~~G~-~~~~ 210 (241)
..|.| ..-+|.+..||++.+|+.||+.||.|+....- -.-.|+|++.|.+.... ......+|.|--.+-.+- +..+
T Consensus 232 ~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~-~~~~~~G~VsY~~~~~~-g~~~evly~YDLeLP~df~P~~q 309 (372)
T PLN02839 232 YPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIA-DRAIAVGAVSYMDIDQY-CFKRDVLFCYDLELPQDFVPKNQ 309 (372)
T ss_pred CCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHH-hcceEeEEEEEEEEcCC-ccccCEEEEeeeecCCccccCCC
Confidence 44444 35568899999999999999999999964321 01246888887643221 112235565555543332 2233
Q ss_pred -CcccceEeecHHhhcccC
Q 026251 211 -GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 211 -~e~~d~~Wvt~eEL~~~l 228 (241)
+|+++|.+++.+|+.+.+
T Consensus 310 DGEVe~F~Lm~v~EV~~~l 328 (372)
T PLN02839 310 DGEVESFKLIPVAQVANVI 328 (372)
T ss_pred ccceeEEEEecHHHHHHHH
Confidence 389999999999997554
No 95
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=96.33 E-value=0.012 Score=51.65 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=61.1
Q ss_pred EEEEEccCCCCCCCCCceecCccccCCC-CCHHHHHHHHHHHHhCCCeE-EEEEcceeeEEEEecCCCCCCCCCceEEEE
Q 026251 120 YLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 197 (241)
Q Consensus 120 ~LLVkr~~~g~~~~~~~W~FP~Gkve~g-Etl~~aAeRel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 197 (241)
+||.||..-= ....|.=.||||+.+++ +|-.+||.||-.||.|.+-+ +.++|..|--+.. . +.-|+=
T Consensus 60 vLltkRSr~L-rshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r----~------~~~v~p 128 (246)
T KOG3069|consen 60 VLLTKRSRTL-RSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLR----S------GWSVFP 128 (246)
T ss_pred EEEEeccccc-cccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeec----c------Ccccce
Confidence 6777665211 24678899999999987 56667999999999999653 3456665432221 1 112222
Q ss_pred EEEEEeCC----ccccc-CcccceEeecHHhhcccC
Q 026251 198 FKSQVIAS----NKFTI-GKCEDFVWVTKDELMEYF 228 (241)
Q Consensus 198 fka~~~~G----~~~~~-~e~~d~~Wvt~eEL~~~l 228 (241)
+.|-+..- ...++ +|+.+.-||..+++..-.
T Consensus 129 ~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~ 164 (246)
T KOG3069|consen 129 VVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPK 164 (246)
T ss_pred eEEEEecccccccccCCchheeeeeeeeHHHHhhhh
Confidence 22222211 11222 489999999999987655
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=94.97 E-value=0.0093 Score=54.53 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCCCCCcccccCCCcchhhccCCcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcce
Q 026251 95 PAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNA 174 (241)
Q Consensus 95 p~~r~T~aD~~~d~~Sl~R~l~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~ 174 (241)
++| .+.|+.-+- ++.| +|||+.- .+..|.||.|++...|+-..||.||+.||+|-+..-..--|
T Consensus 81 ~iP-v~ga~ild~--~~sr------~llv~g~------qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~- 144 (348)
T KOG2937|consen 81 RIP-VRGAIILDE--KRSR------CLLVKGW------QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDN- 144 (348)
T ss_pred CCC-CchHhhhhh--hhhh------hheeece------ecccccccCccccccchhhhcchhcccchhhcCHHHHhccc-
Confidence 344 456665543 2333 7788754 23459999999999999999999999999998765432111
Q ss_pred eeEEEEecCCCCCCCCCceEEEEEEEEEeCC----cccccCcccceEeecHHhhccc
Q 026251 175 PMGHMVMQPAEKMPDVPSYKQFFFKSQVIAS----NKFTIGKCEDFVWVTKDELMEY 227 (241)
Q Consensus 175 P~g~~~y~~~~~~~~~~g~kvfffka~~~~G----~~~~~~e~~d~~Wvt~eEL~~~ 227 (241)
.+-+.. ..|.-++.|...-+.- .+..-.+++...|...+++...
T Consensus 145 -------e~Ie~n--I~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t 192 (348)
T KOG2937|consen 145 -------EGIETN--IRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPT 192 (348)
T ss_pred -------cCcccc--hhhceeeeeeeccceeeeecchhhhccccceeeeehhhhccc
Confidence 111111 2234455332211111 1111247899999999999443
No 97
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=93.96 E-value=0.47 Score=40.45 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=31.0
Q ss_pred EEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCC---eEEEEEcce
Q 026251 119 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDL---SHTYFVGNA 174 (241)
Q Consensus 119 L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~---i~v~~vg~~ 174 (241)
-+||.|.. ...|.+|||.+..||.-.+.+.|-|.+-+|.. ...|.||..
T Consensus 59 HvLLLq~~-------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~ 110 (188)
T PF13869_consen 59 HVLLLQIG-------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGEC 110 (188)
T ss_dssp EEEEEEET-------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEE
T ss_pred EEEEEecc-------CccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCE
Confidence 35666643 45899999999999999999999999999874 355666643
No 98
>PRK10880 adenine DNA glycosylase; Provisional
Probab=93.54 E-value=0.19 Score=46.78 Aligned_cols=95 Identities=7% Similarity=-0.067 Sum_probs=49.8
Q ss_pred CCcEEEEEEccCCCCCCCCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEE
Q 026251 116 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 195 (241)
Q Consensus 116 ~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 195 (241)
++..+||.||+..| -.+|.|+||+.. .. +.+ ++..++.|...... ..++.++|.+... ...+
T Consensus 240 ~~~~~~l~~r~~~g--l~~gl~~fP~~~--~~----~~~-~~~~~~~~~~~~~~----~~~~~~~H~fTH~-----~~~~ 301 (350)
T PRK10880 240 HGDEVWLEQRPPSG--LWGGLFCFPQFA--DE----EEL-RQWLAQRGIAADNL----TQLTAFRHTFSHF-----HLDI 301 (350)
T ss_pred ECCEEEEEECCccC--hhhccccCCCCc--ch----hhH-HHHHHhcCCchhhh----cccCceEEEEeeE-----EEEE
Confidence 44578888886422 367899999752 11 122 33446666542111 1123334433321 1234
Q ss_pred EEEEEEEeCCcccccCcccceEeecHHhhcccC-cc
Q 026251 196 FFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 230 (241)
Q Consensus 196 fffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~ 230 (241)
..|.+...+..... ...+..|++.+|+.++- |.
T Consensus 302 ~~~~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~p~ 335 (350)
T PRK10880 302 VPMWLPVSSFTGCM--DEGNGLWYNLAQPPSVGLAA 335 (350)
T ss_pred EEEEEEcccccccc--CCcCCeEechHHhcccCCcH
Confidence 45555543222111 12356799999999987 64
No 99
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.21 E-value=0.2 Score=43.05 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEc-ceeeEEEEecCCCCCCCCCceEEEEEEEEEeCCccccc---CcccceEeecHH
Q 026251 147 EESLRKCAECALQSVLGDLSHTYFVG-NAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNKFTI---GKCEDFVWVTKD 222 (241)
Q Consensus 147 gEtl~~aAeRel~Ee~G~~i~v~~vg-~~P~g~~~y~~~~~~~~~~g~kvfffka~~~~G~~~~~---~e~~d~~Wvt~e 222 (241)
+.-.+.||+|-|.-|+|+..+..... ...++-+.|+-+.+. .-|..-.-|.--+. ++..+. +|+++++||+++
T Consensus 102 ~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg--~wGEhEiDYiL~~~-~~~~~nPnpnEv~e~ryvs~e 178 (225)
T KOG0142|consen 102 ALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDG--IWGEHEIDYILFLV-KDVTLNPNPNEVSEIRYVSRE 178 (225)
T ss_pred hHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCC--CcccceeeEEEEEe-ccCCCCCChhhhhHhheecHH
Confidence 34689999999999999965532111 133566667654432 22322222221112 233332 489999999999
Q ss_pred hhcccC
Q 026251 223 ELMEYF 228 (241)
Q Consensus 223 EL~~~l 228 (241)
||++.+
T Consensus 179 elkel~ 184 (225)
T KOG0142|consen 179 ELKELV 184 (225)
T ss_pred HHHHHH
Confidence 999998
No 100
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=83.31 E-value=1.8 Score=36.43 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCceecCccccCCCCCHHHHHHHHHHHHhC
Q 026251 134 KPIWHFPEKVYESEESLRKCAECALQSVLG 163 (241)
Q Consensus 134 ~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G 163 (241)
.....+|||.+++||+--+.+.|.+.|.+|
T Consensus 93 ~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 93 NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 578999999999999999999999999999
No 101
>PRK13910 DNA glycosylase MutY; Provisional
Probab=81.13 E-value=4.6 Score=36.67 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=23.1
Q ss_pred eEEEEEEEEEeCCcccccCcccceEeecHHhhcccC-cch-HHHHH
Q 026251 193 YKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PES-AEFLN 236 (241)
Q Consensus 193 ~kvfffka~~~~G~~~~~~e~~d~~Wvt~eEL~~~l-p~~-~~~v~ 236 (241)
..+.+|.+.+... ..++.|++.+|+.++- |.- ..+++
T Consensus 241 ~~~~~~~~~~~~~-------~~~~~w~~~~~~~~~~~p~~~~k~~~ 279 (289)
T PRK13910 241 LNLNLYLAAIKDL-------KNPIRFYSLKDLETLPISSMTLKILN 279 (289)
T ss_pred EEEEEEEEEeccC-------CccceEecHHHhhhcCCcHHHHHHHH
Confidence 3456666554311 2467999999999987 643 34443
No 102
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=67.21 E-value=16 Score=30.61 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhCCC---eE-EEEEcceeeEEEEecCCCCCCCCCceEEEEEEEEEeCCcc---ccc-CcccceEeec
Q 026251 149 SLRKCAECALQSVLGDL---SH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNK---FTI-GKCEDFVWVT 220 (241)
Q Consensus 149 tl~~aAeRel~Ee~G~~---i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kvfffka~~~~G~~---~~~-~e~~d~~Wvt 220 (241)
-|+-.++|||.||+|+. .+ ..+ +|.+.-+ .. .+| ||+.=......|++ ... .+.-.++|+.
T Consensus 112 vLk~n~~REleEEv~vseqd~q~~e~-----lGlINdd--~n---eVg-kVHiG~lf~~~~k~ndvevKEkd~~~~kwik 180 (203)
T COG4112 112 VLKGNLERELEEEVDVSEQDLQELEF-----LGLINDD--TN---EVG-KVHIGALFLGRGKFNDVEVKEKDLFEWKWIK 180 (203)
T ss_pred HHccchHHHHHHHhCcCHHHhhhhee-----eeeecCC--Cc---ccc-eEEEEEEEEeeccccceeeeecceeeeeeee
Confidence 34455899999999985 22 222 4555321 11 121 22221111122333 111 2455899999
Q ss_pred HHhhccc
Q 026251 221 KDELMEY 227 (241)
Q Consensus 221 ~eEL~~~ 227 (241)
.+||.+.
T Consensus 181 ~~ele~~ 187 (203)
T COG4112 181 LEELEKF 187 (203)
T ss_pred HHHHHHH
Confidence 9999993
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=62.72 E-value=12 Score=34.36 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=41.8
Q ss_pred ceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEcceeeEEEEecCCCCCCCCCceEEEEEEEEEe
Q 026251 136 IWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVI 203 (241)
Q Consensus 136 ~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfffka~~~ 203 (241)
.-++=+|.++..-|+++-|..|+.||||-.+... .-+++|+|...... -|.-...|.|.+-
T Consensus 80 tielc~g~idke~s~~eia~eev~eecgy~v~~d----~l~hv~~~~~g~~~---s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPD----DLIHVITFVVGAHQ---SGSAQHLYYAEID 140 (405)
T ss_pred eeeeeccccccccCHHHHhHHHHHHHhCCcCChh----HceEEEEEEecccc---Cccchheeeeecc
Confidence 3566778899999999999999999999987764 23566766543221 2234445556553
No 104
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=53.73 E-value=11 Score=35.15 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=19.5
Q ss_pred cCCcEEEEEEccCCCCCCCCCceecCccccCC
Q 026251 115 LDRRLYLILYGETFGAPGGKPIWHFPEKVYES 146 (241)
Q Consensus 115 l~~~L~LLVkr~~~g~~~~~~~W~FP~Gkve~ 146 (241)
..+..++|.++...| -.+|.|.||......
T Consensus 244 ~~~~~~~l~kr~~~g--l~~gl~~fP~~e~~~ 273 (342)
T COG1194 244 NRDGEVLLEKRPEKG--LLGGLWCFPQFEDEA 273 (342)
T ss_pred ccCcchhhhhCcccC--ceecccccccccccc
Confidence 344456666665322 356789999998765
No 105
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=45.47 E-value=24 Score=26.81 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.7
Q ss_pred eEEEeeeccccCCCCCHHHHHHHHHH
Q 026251 37 ASVLFERLPVVIPKIDPVVYAFQEFS 62 (241)
Q Consensus 37 ~av~leR~Pvi~~~~~p~E~~f~~~~ 62 (241)
.++-+..+|--+|++||+|.-|..+.
T Consensus 106 ~~~~~~~~P~~sPdLNpiE~~w~~lk 131 (146)
T PF13358_consen 106 RGIELLFLPPYSPDLNPIENVWGYLK 131 (146)
T ss_pred cccccccccCcCCccCHHHHHHHHHH
Confidence 46889999999999999998887774
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=45.46 E-value=28 Score=31.37 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=18.0
Q ss_pred CcEEEEEEccCCCCCCCCCceecCccc
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKV 143 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gk 143 (241)
+..+||.|+...| -.+|.|+||+..
T Consensus 238 ~~~~~~~~r~~~~--~~~gl~~~p~~~ 262 (275)
T TIGR01084 238 DGEVLLEQRPEKG--LWGGLYCFPQFE 262 (275)
T ss_pred CCeEEEEeCCCCc--hhhccccCCCCC
Confidence 4578999886322 357899999853
No 107
>PF14443 DBC1: DBC1
Probab=44.11 E-value=1.1e+02 Score=24.43 Aligned_cols=36 Identities=14% Similarity=-0.058 Sum_probs=25.9
Q ss_pred CCCceec--CccccCC-CCCHHHHHHHHHHHHhCCCeEE
Q 026251 133 GKPIWHF--PEKVYES-EESLRKCAECALQSVLGDLSHT 168 (241)
Q Consensus 133 ~~~~W~F--P~Gkve~-gEtl~~aAeRel~Ee~G~~i~v 168 (241)
.+|.|.= =|+.-.. -.+|-.||+|.+++.+|+++..
T Consensus 22 iGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 22 IGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred cCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 4566752 2334333 4789999999999999998753
No 108
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=33.45 E-value=10 Score=35.12 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=35.8
Q ss_pred CCCceecCccccCCCCCHHHHHHHHHHHHhCCCeEEEEEccee
Q 026251 133 GKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAP 175 (241)
Q Consensus 133 ~~~~W~FP~Gkve~gEtl~~aAeRel~Ee~G~~i~v~~vg~~P 175 (241)
....|.||.++++-||-.++++.+.-.++.|...-.+.+.|.+
T Consensus 262 ~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s~~~~n~k 304 (348)
T KOG2937|consen 262 KPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGSYPEKNKK 304 (348)
T ss_pred ccccccCcccccccCCccccchhhhcCCCcCCcccccchhccc
Confidence 3457999999999999999999999999998877666555544
No 109
>PF14044 NETI: NETI protein
Probab=33.41 E-value=33 Score=23.63 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=15.4
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 026251 142 KVYESEESLRKCAECALQSV 161 (241)
Q Consensus 142 Gkve~gEtl~~aAeRel~Ee 161 (241)
..|+++||+.+|+.| ++++
T Consensus 2 FeV~enETI~~CL~R-M~~e 20 (57)
T PF14044_consen 2 FEVEENETISDCLAR-MKKE 20 (57)
T ss_pred eeccCCCcHHHHHHH-HHHc
Confidence 468899999999999 4444
No 110
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=27.24 E-value=46 Score=23.70 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.9
Q ss_pred cCccccCCCCCHHHHHHH
Q 026251 139 FPEKVYESEESLRKCAEC 156 (241)
Q Consensus 139 FP~Gkve~gEtl~~aAeR 156 (241)
.|+..|.+||+++.|+.|
T Consensus 1 M~~v~V~ene~~d~ALrr 18 (67)
T COG0828 1 MPQVKVRENEPLDKALRR 18 (67)
T ss_pred CCeeeecCCChHHHHHHH
Confidence 488899999999999876
No 111
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=20.73 E-value=55 Score=31.28 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=32.0
Q ss_pred CcEEEEEEccCCCCCCCCCceecCcccc-CCCCCHHHH-HHHH-HHHHhCC
Q 026251 117 RRLYLILYGETFGAPGGKPIWHFPEKVY-ESEESLRKC-AECA-LQSVLGD 164 (241)
Q Consensus 117 ~~L~LLVkr~~~g~~~~~~~W~FP~Gkv-e~gEtl~~a-AeRe-l~Ee~G~ 164 (241)
++.+||++|+..| -..|.|.||.-.+ +.+|.++-- ..++ +.-.++.
T Consensus 386 ~~~ilv~~rp~~g--llagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~ 434 (555)
T KOG2457|consen 386 RNAILVYLRPAFG--LLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLV 434 (555)
T ss_pred cceeEEEeccchh--HHHHhhhcCceeccCcchHHHHHHHHHHHHHHHhcc
Confidence 4679999987544 3567899999888 788876543 3333 6656554
Done!