BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026252
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIF 225
++LP+ G I+ A+E G+K+ + SNEK V L ++AEKIQIF
Sbjct: 519 EVLPI-GGATPAIEAAIEAGIKMVIIPKSNEKDV------FLSKDKAEKIQIF 564
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKE-LGVTWDVDLYGELLKIGGGKERMTAYFN 136
A++FD DGVL DTE + F + E G + DL+ +I G ER
Sbjct: 2 EAVIFDXDGVLXDTEP----LYFEAYRRVAESYGKPYTEDLHR---RIXGVPER------ 48
Query: 137 KTGWP--EKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVK 194
G P +A ++ + F +H+ K +F +LL PGV + ++ K +K
Sbjct: 49 -EGLPILXEALEIKDSLENFKKRVHEEKKRVF-----SELLKENPGVREALEFVKSKRIK 102
Query: 195 VAVC-STSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
+A+ ST +A+ + L E+ + +F GD V KPDP
Sbjct: 103 LALATSTPQREALERLRRLDL--EKYFDVXVF-GDQVKNGKPDP 143
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A++FD DGV+ DT + H +++ +++ + +D D E LK +E + +
Sbjct: 4 AVIFDLDGVITDT-AEYHFLAWKHI--AEQIDIPFDRD-XNERLKGISREESLESILIFG 59
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP--LRPGVAKLIDQALEKGVKVA 196
G K + E++ L RK + LI KL P L PG+ +L+ Q + +K+
Sbjct: 60 GAETKYTNAEKQE------LXHRKNRDYQXLI-SKLTPEDLLPGIGRLLCQLKNENIKIG 112
Query: 197 VCSTS 201
+ S+S
Sbjct: 113 LASSS 117
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 79 ALLFDCDGVLVDT------------EKDGHRISFNDTFKEKELGVTWDVDLYGEL-LKIG 125
A +FD DG ++DT E+ GHR F + G V + L + G
Sbjct: 6 AAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEAG 65
Query: 126 GGKERMTAYFNKTGW-PEKAPSDEEER-----KQFIASLHKRKTELFMVLIEKKLLPLRP 179
+E + A+ K PE E R K + A + KT F P
Sbjct: 66 SSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTGPF------------P 113
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214
G+ L +KGVK+AV S +AV +V L
Sbjct: 114 GILDLXKNLRQKGVKLAVVSNKPNEAVQVLVEELF 148
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 14/123 (11%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A +FD DG+L+D+E R + LGV D+ EL G +
Sbjct: 11 AAIFDXDGLLIDSEPLWDRAELD---VXASLGV--DISRRNELPDTLGLRIDXVVDLWYA 65
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVC 198
P PS +E ++ IA + L+E+ PL PGV + + E+G+ V +
Sbjct: 66 RQPWNGPSRQEVVERVIAR--------AISLVEET-RPLLPGVREAVALCKEQGLLVGLA 116
Query: 199 STS 201
S S
Sbjct: 117 SAS 119
>pdb|2AH5|A Chain A, Hydrolase, Haloacid Dehalogenase-Like Family Protein
Sp0104 From Streptococcus Pneumoniae
Length = 210
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGV 111
+A+ FD DG LVD+ H +F TF KELGV
Sbjct: 5 TAIFFDLDGTLVDSSIGIHN-AFTYTF--KELGV 35
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 39/175 (22%)
Query: 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTG 139
L+FD DG+L+DTE+ + + F + + +WDV + GK+ + A
Sbjct: 33 LIFDMDGLLLDTER-LYSVVFQEICNRYDKKYSWDVK------SLVMGKKALEAAQIIID 85
Query: 140 WPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP---LRPGVAKLIDQALEKGVKVA 196
+ S EE + + +T+L K++ P L PG KLI + G+ A
Sbjct: 86 VLQLPMSKEE-------LVEESQTKL------KEVFPTAALMPGAEKLIIHLRKHGIPFA 132
Query: 197 VCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGD--VVPRKKPDP---LCCG 241
+ ++S SF + R ++ I GD V KPDP L C
Sbjct: 133 LATSSRS------ASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACA 181
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFK--EKELGVTWDVDLYGELLKIGGGKERMTAYFN 136
A+LFD DGV+ DT + R +K +E+G+ + E LK G R +
Sbjct: 4 AVLFDLDGVITDTAEYHFR-----AWKALAEEIGINGVDRQFNEQLK---GVSREDSLQK 55
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEK-KLLPLRPGVAKLIDQALEKGVKV 195
+K S EE ++ L KRK + ++ +I+ + PG+ +L+ +K+
Sbjct: 56 ILDLADKKVSAEEFKE-----LAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKI 110
Query: 196 AVCSTS 201
A+ S S
Sbjct: 111 ALASAS 116
>pdb|2X9Z|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 262
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 99 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 139
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 141 PEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCST 200
P A + EE ++F A + L L PGV + +D+ G ++A+ ++
Sbjct: 80 PRVAEATEEYGRRFGAHVRAAGPRL-----------LYPGVLEGLDRLSAAGFRLAMATS 128
Query: 201 SNEKAVTAIVSFLLGPERAEKIQIFAG-DVVPRKKPDP 237
EKA AI L G + ++ + AG D V R KP P
Sbjct: 129 KVEKAARAIAE-LTGLD--TRLTVIAGDDSVERGKPHP 163
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTW--DVDLYGELLKIGGGKERMTAYFN 136
+LFD DG L+D+ KD ++ T KE L + +V Y IGGG +
Sbjct: 5 VILFDLDGTLIDSAKDI-ALALEKTLKELGLEEYYPDNVTKY-----IGGGVRALL---- 54
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVA 196
EK D + R++++ K E +V + P + ++ KG K+A
Sbjct: 55 -----EKVLKD-KFREEYVEVFRKHYLENPVVYTKP-----YPEIPYTLEALKSKGFKLA 103
Query: 197 VCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
V S E+ I+ L + I GD KKP P
Sbjct: 104 VVSNKLEELSKKILDILNLSGYFD--LIVGGDTFGEKKPSP 142
>pdb|2X9Y|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 102 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 142
>pdb|2X9W|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
pdb|2X9X|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 102 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 142
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTW--DVDLYGELLKIGGGKERMTAYFN 136
+LFD DG L+D+ KD ++ T KE L + +V Y IGGG +
Sbjct: 3 VILFDLDGTLIDSAKD-IALALEKTLKELGLEEYYPDNVTKY-----IGGGVRALL---- 52
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVA 196
EK D + R++++ K E +V + P + ++ KG K+A
Sbjct: 53 -----EKVLKD-KFREEYVEVFRKHYLENPVVYTKP-----YPEIPYTLEALKSKGFKLA 101
Query: 197 VCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
V S E+ I+ L + I GD KKP P
Sbjct: 102 VVSNKLEELSKKILDILNLSGYFD--LIVGGDTFGEKKPSP 140
>pdb|2Y1V|A Chain A, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|B Chain B, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|C Chain C, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
Length = 605
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 257 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 297
>pdb|3RPK|A Chain A, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
pdb|3RPK|B Chain B, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
Length = 603
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 260 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 300
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 13/46 (28%)
Query: 80 LLFDCDGVLVDTE------------KDGHRISFNDTFKEKELGVTW 113
++FDCDGVLVD+E + G+ IS + E+ G TW
Sbjct: 7 IIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEX-GERFAGXTW 51
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Query: 57 SSANPMSMRNVRVTCSASVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVD 116
SS + N+ +A + A +FD DGV+ DT + +++ V D+D
Sbjct: 8 SSGVDLGTENLYFQSNAMI--EAFIFDLDGVITDTAYYHYM-----AWRKLAHKVGIDID 60
Query: 117 L-YGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLI-EKKL 174
+ E LK G RM + + K S EE K +A + K ++ LI E
Sbjct: 61 TKFNESLK---GISRMESLDRILEFGNKKYSFSEEEKVRMA---EEKNNYYVSLIDEITS 114
Query: 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201
+ PG+ L+ +K+ + S S
Sbjct: 115 NDILPGIESLLIDVKSNNIKIGLSSAS 141
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233
+L + PG + + LEK KV C + + V + + G A K+Q+ GDV+
Sbjct: 32 VLEVGPGTGNMTVKLLEKAKKVVACEL-DPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90
Query: 234 KP 235
P
Sbjct: 91 LP 92
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase
From Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase
From Streptococcus Thermophilus
Length = 214
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 79 ALLFDCDGVLVDTEK 93
A++FD DGVL DTEK
Sbjct: 7 AIIFDXDGVLFDTEK 21
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFK--EKELGVTWDVDLYGELLKIGGGKERMTAYFN 136
A+LFD DGV+ D + R +K +E+G+ + E LK G R +
Sbjct: 4 AVLFDLDGVITDPAEYHFR-----AWKALAEEIGINGVDRQFNEQLK---GVSREDSLQK 55
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEK-KLLPLRPGVAKLIDQALEKGVKV 195
+K S EE ++ L KRK + ++ +I+ + PG+ +L+ +K+
Sbjct: 56 ILDLADKKVSAEEFKE-----LAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKI 110
Query: 196 AVCSTS 201
A+ S S
Sbjct: 111 ALASAS 116
>pdb|1DBT|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|C Chain C, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
Length = 239
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 125 GGGKERMTAYFNKTGWPEKAPSDEEERKQFIASLHKRKT-ELFM---VLIEKKLLPLRPG 180
GGK+ M A G E P+ ++ R IA T E M +LIEK L+
Sbjct: 90 AGGKKMMQAALE--GLEEGTPAGKK-RPSLIAVTQLTSTSEQIMKDELLIEKSLIDT--- 143
Query: 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211
V QA E G+ VCS KA+ VS
Sbjct: 144 VVHYSKQAEESGLDGVVCSVHEAKAIYQAVS 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,872,004
Number of Sequences: 62578
Number of extensions: 226567
Number of successful extensions: 653
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 25
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)