BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026252
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O33513|CBBY_RHOCA Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1
Length = 227
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
AL+FD DG L +TE + HR +FN+TF + L W + Y LL+ GGKERM +
Sbjct: 5 ALIFDVDGTLAETE-EVHRQAFNETFAAQGLDWYWSKEDYRTLLRTTGGKERMAKHRENL 63
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVC 198
G PSD + IA LHK KT+ ++ +I + L PGVA+LID+A G+++A+
Sbjct: 64 G---SGPSDAK-----IADLHKAKTQRYVEIIASGQVGLLPGVAELIDRAKASGLRLAIA 115
Query: 199 STSNEKAVTAIVSFLLGPERAEKIQIF-AGDVVPRKKPDP 237
+T+ V A+++ + ++ AGD V +KKP P
Sbjct: 116 TTTTRANVDALIAATFSKPAGDIFEVIAAGDEVAQKKPAP 155
>sp|P95649|CBBY_RHOSH Protein CbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1
Length = 230
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 12/161 (7%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYF-NK 137
A+LFD DG L +TE + HR +FN+TF + WD + Y ELL GGKER+ + ++
Sbjct: 4 AILFDVDGTLAETE-ELHRRAFNETFAALGVDWFWDREEYRELLTTTGGKERIARFLRHQ 62
Query: 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAV 197
G P P IA +H+ KTE F+ L+ + + LRPG+A LI +A G+++AV
Sbjct: 63 KGDPAPLP---------IADIHRAKTERFVALMAEGEIALRPGIADLIAEAKRAGIRLAV 113
Query: 198 CSTSNEKAVTAIVSFLLG-PERAEKIQIFAGDVVPRKKPDP 237
+T++ V A+ G P R I AGD+V KKP P
Sbjct: 114 ATTTSLPNVEALCRACFGHPAREIFDVIAAGDMVAEKKPSP 154
>sp|P40119|CBBYC_CUPNH Protein CbbY, chromosomal OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=cbbYC PE=3 SV=3
Length = 254
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNK 137
AL+FD DG L DTE H +FN F E L WD LY LLK+ GGKER+ Y+
Sbjct: 2 QALIFDVDGTLADTES-AHLQAFNAAFAEVGLDWYWDAPLYTRLLKVAGGKERLMHYWRM 60
Query: 138 TGWPEKAPSDEEER----KQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGV 193
EE R K+ I ++H KT + + LPLRPG+A+LID+A E G+
Sbjct: 61 V-------DPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIDEAGEAGL 113
Query: 194 KVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDP 237
+A+ +T+ + A++ LG + R I KKP P
Sbjct: 114 PLAIATTTTPANLDALLQAPLGADWRRRFAAIGDAGTTAIKKPAP 158
>sp|Q04541|CBBYP_CUPNH Protein CbbY, plasmid OS=Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337) GN=cbbYP PE=3 SV=1
Length = 254
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNK 137
AL+FD DG L DTE H +FN F E L WD LY LLK+ GGKER+ Y+
Sbjct: 2 QALIFDVDGTLADTET-AHLQAFNAAFAEVGLDWHWDAPLYTRLLKVAGGKERLMHYWRM 60
Query: 138 TGWPEKAPSDEEER----KQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGV 193
EE R K+ I ++H KT + + LPLRPG+A+LI +A E G+
Sbjct: 61 V-------DPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIAEAGEAGL 113
Query: 194 KVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDP 237
+A+ +T+ + A++ LG + R I KKP P
Sbjct: 114 PLAIATTTTPANLDALLQAHLGADWRGRFAAICDAGTTAIKKPAP 158
>sp|Q88A30|GPH_PSESM Phosphoglycolate phosphatase OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=PSPTO_0567 PE=3 SV=2
Length = 272
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 25/171 (14%)
Query: 73 ASVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMT 132
A LP ++FD DG LVD+ D L V D + EL + G E +
Sbjct: 9 AGKLPKLIMFDLDGTLVDSVPD--------------LAVAVDT-MLAELGRPTAGLESVR 53
Query: 133 AYFNKTGWP---EKAPSDEEERKQFIASLHKRKTELFMVLIEKK--LLPLRPGVAKLIDQ 187
A+ G P +A ++ + +L +R ++FM +K + PGV + +
Sbjct: 54 AWVG-NGAPVLVRRALANNLDHSGVDEALAERGLDIFMRAYAEKHEFTVVYPGVRETLKW 112
Query: 188 ALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPRKKPDP 237
+ GV++A+ + E+ V ++ + LG R + I GD +P+KKPDP
Sbjct: 113 LQKMGVEMALITNKPERFVAPLLDEMKLG--RFFR-WIIGGDTMPQKKPDP 160
>sp|Q4ZMI2|GPH_PSEU2 Phosphoglycolate phosphatase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=Psyr_4610 PE=3 SV=1
Length = 272
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 25/171 (14%)
Query: 73 ASVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMT 132
A LP ++FD DG LVD+ D L V D + EL + G E +
Sbjct: 9 AGKLPKLIMFDLDGTLVDSVPD--------------LAVAVDT-MLAELGRPIAGLESVR 53
Query: 133 AYFNKTGWP---EKAPSDEEERKQFIASLHKRKTELFMVLIEKK--LLPLRPGVAKLIDQ 187
A+ G P +A ++ + +L ++ E+FM +K + PGV + +
Sbjct: 54 AWVG-NGAPVLVRRALANNLDHSGVDDALAEQGLEIFMRAYAQKHEFTVVYPGVRETLKW 112
Query: 188 ALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPRKKPDP 237
+ GV++A+ + E+ V ++ + LG R + I GD +P+KKPDP
Sbjct: 113 LQKMGVEMALITNKPERFVAPLLDEMKLG--RFFR-WIVGGDTMPQKKPDP 160
>sp|Q48NS2|GPH_PSE14 Phosphoglycolate phosphatase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=PSPPH_0648 PE=3
SV=2
Length = 272
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 25/171 (14%)
Query: 73 ASVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMT 132
A LP ++FD DG LVD+ D L V D + EL + G E +
Sbjct: 9 AGKLPKLVMFDLDGTLVDSVPD--------------LAVAVDT-MLAELGRPIAGLESVR 53
Query: 133 AYFNKTGWP---EKAPSDEEERKQFIASLHKRKTELFMVLIEKK--LLPLRPGVAKLIDQ 187
A+ G P +A ++ + L ++ E+FM +K + PGV + +
Sbjct: 54 AWVG-NGAPVLVRRALANHLDHSGVDDELAEQGLEIFMRAYAQKHEFTVVYPGVRETLKW 112
Query: 188 ALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPRKKPDP 237
+ GV++A+ + E+ V ++ + LG R + I GD +P+KKPDP
Sbjct: 113 LQKMGVEMALITNKPERFVAPLLDEMKLG--RFFR-WIIGGDTMPQKKPDP 160
>sp|P54607|YHCW_BACSU Uncharacterized protein YhcW OS=Bacillus subtilis (strain 168)
GN=yhcW PE=3 SV=1
Length = 220
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
AL+FD DG+++DTE + + + F+E G + ++G+++ G +
Sbjct: 4 ALIFDFDGLILDTETHEYEV-LQEIFEEH--GSVLPLSVWGKVIGTAAGFRPFEYLEEQI 60
Query: 139 GWPEKAPSDEE----ERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVK 194
G K + EE R++F + K RPGV ++ A + G+K
Sbjct: 61 G---KKLNHEELTQLRRERFAKRMESEKA--------------RPGVEAYLNAAKDLGLK 103
Query: 195 VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
+ + S+S+ K V+ + + + E IQ D V KP+P
Sbjct: 104 IGLASSSDYKWVSGHLKQIGLFDDFEVIQ--TADDVEEVKPNP 144
>sp|Q3J8A0|GPH_NITOC Phosphoglycolate phosphatase OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=Noc_2493 PE=3 SV=1
Length = 225
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 77 PSALLFDCDGVLVDTEKDGHRISF-NDTFKEKELGVTWDVDLYGEL---LKIGGGKERMT 132
P +L D DG LVD+ D ++F DT E+ LG+ L GE +G G ER+
Sbjct: 5 PEMILIDVDGTLVDSVPD---LTFCTDTMMER-LGLP----LRGETKVRQWVGNGVERLI 56
Query: 133 AYF---NKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEK---KLLPLRPGVAKLID 186
N G PE+ L+++ +F+ L K L PGV + +
Sbjct: 57 KRALVDNMEGEPEE-------------DLYQKAETIFLALYADNTSKRSHLYPGVNEGLA 103
Query: 187 QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
+G +V C T+ T + LG +I + +GD +P KKP P
Sbjct: 104 WLKSQGYRVG-CVTNKAAQFTYPLLTELGIIDYFEI-VISGDTLPEKKPHP 152
>sp|Q2Y6G2|GPH_NITMU Phosphoglycolate phosphatase OS=Nitrosospira multiformis (strain
ATCC 25196 / NCIMB 11849) GN=Nmul_A2370 PE=3 SV=1
Length = 227
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLK--IGGGKERMTAYFN 136
A++ D DG L+DT D ++ KELG +L E ++ IG G E++ +
Sbjct: 9 AVMIDLDGTLLDTAPD---LATAANMMLKELG---KAELPLETIQSYIGKGIEKLVKR-S 61
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVA 196
TG + P + R+ L++R E + + + PGV + ++ G ++A
Sbjct: 62 LTGDLDGEPDSDLLRRAM--PLYERSYEKTLYVDTRAY----PGVREGLNALRAGGFRLA 115
Query: 197 VCSTSNEKAVTAIVSFLLGPERAEKIQIF-AGDVVPRKKPDPL 238
C T+ +A T + L E + I +GD +P+KKPDP+
Sbjct: 116 -CVTNKAEAFT--LPLLRAAELLDYFDIVVSGDSLPKKKPDPM 155
>sp|Q9X0Y1|P1254_THEMA Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=TM_1254 PE=1 SV=1
Length = 216
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 26/164 (15%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKE-LGVTWDVDLYGELLKIGGGKERMTAYFN 136
A++FD DGVL+DTE + F + E G + DL+ +I G ER
Sbjct: 2 EAVIFDMDGVLMDTEP----LYFEAYRRVAESYGKPYTEDLHR---RIMGVPER------ 48
Query: 137 KTGWP--EKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVK 194
G P +A ++ + F +H+ K +F +LL PGV + ++ K +K
Sbjct: 49 -EGLPILMEALEIKDSLENFKKRVHEEKKRVF-----SELLKENPGVREALEFVKSKRIK 102
Query: 195 VAVC-STSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
+A+ ST +A+ + L E+ + +F GD V KPDP
Sbjct: 103 LALATSTPQREALERLRRLDL--EKYFDVMVF-GDQVKNGKPDP 143
>sp|O06995|PGMB_BACSU Beta-phosphoglucomutase OS=Bacillus subtilis (strain 168) GN=yvdM
PE=1 SV=1
Length = 226
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A++FD DGV+ DT + H +++ +++ + +D D+ E LK +E + +
Sbjct: 3 AVIFDLDGVITDT-AEYHFLAWKHI--AEQIDIPFDRDM-NERLKGISREESLESILIFG 58
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP--LRPGVAKLIDQALEKGVKVA 196
G K + E++ L RK + +LI KL P L PG+ +L+ Q + +K+
Sbjct: 59 GAETKYTNAEKQ------ELMHRKNRDYQMLI-SKLTPEDLLPGIGRLLCQLKNENIKIG 111
Query: 197 VCSTS 201
+ S+S
Sbjct: 112 LASSS 116
>sp|Q9A5Z2|GPH_CAUCR Phosphoglycolate phosphatase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=gph PE=3 SV=1
Length = 237
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 82 FDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIG-GGKERMTAYFNKTGW 140
FD DG LVDT D + N ++ L D+ L +G G + + F G
Sbjct: 14 FDLDGTLVDTAPD-LVGALNIILAQESLPPLPFDDVR---LMVGRGARALLERGFAAAG- 68
Query: 141 PEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCST 200
AP D E+ + +R ++++ I + P PGV +++ G K+ VC+
Sbjct: 69 ---APLDAEQAPALV----QRFIDVYLARIADESAPF-PGVVEVLSDLKTAGAKLVVCTN 120
Query: 201 SNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPD 236
TA++ + E + D+ P KPD
Sbjct: 121 KLTNLSTALLDAVALSPFFEA--VIGADLAPAAKPD 154
>sp|Q7ADF8|YNIC_ECO57 2-deoxyglucose-6-phosphate phosphatase OS=Escherichia coli O157:H7
GN=yniC PE=3 SV=1
Length = 222
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A +FD DG+L+D+E R + LGV D+ EL G + M
Sbjct: 9 AAIFDMDGLLIDSEPLWDRAELDVM---ASLGV--DISRRNELPDTLGLRIDMVVDLWYA 63
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVC 198
P PS +E ++ IA + L+E+ PL PGV + + E+G+ V +
Sbjct: 64 RQPWNGPSRQEVVERVIAR--------AISLVEET-RPLLPGVREAVALCKEQGLLVGLA 114
Query: 199 STS 201
S S
Sbjct: 115 SAS 117
>sp|P77247|YNIC_ECOLI 2-deoxyglucose-6-phosphate phosphatase OS=Escherichia coli (strain
K12) GN=yniC PE=1 SV=1
Length = 222
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A +FD DG+L+D+E R + LGV D+ EL G + M
Sbjct: 9 AAIFDMDGLLIDSEPLWDRAELDVM---ASLGV--DISRRNELPDTLGLRIDMVVDLWYA 63
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVC 198
P PS +E ++ IA + L+E+ PL PGV + + E+G+ V +
Sbjct: 64 RQPWNGPSRQEVVERVIAR--------AISLVEET-RPLLPGVREAVALCKEQGLLVGLA 114
Query: 199 STS 201
S S
Sbjct: 115 SAS 117
>sp|P53981|YNB0_YEAST Uncharacterized phosphatase YNL010W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YNL010W PE=1 SV=1
Length = 241
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 124 IGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAK 183
+G GKE+ F G + S + + + S+H E +L EKK+ L PG
Sbjct: 27 LGFGKEKRLKVFE--GVLDDTKSFRQGFMEMLESIHTPFPECIKIL-EKKI-RLDPGFKD 82
Query: 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229
+ A E V V V S+ + + +++ L+G E KI I + +V
Sbjct: 83 TFEWAQENDVPVIVVSSGMKPIIKVLLTRLVGQESIHKIDIVSNEV 128
>sp|Q3B2F5|HPRK_PELLD HPr kinase/phosphorylase OS=Pelodictyon luteolum (strain DSM 273)
GN=hprK PE=3 SV=1
Length = 332
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 122 LKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGV 181
L+I G E T + N G EEERK A+L + K ++ KL P
Sbjct: 67 LQILGNTE--TRFLNHLG--------EEERKAAFANLTRFKVPCIILTSNNKLQP----- 111
Query: 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213
+L+D A G+ V V S+ KA+ + FL
Sbjct: 112 -ELLDMATAAGIPVYVTRQSSTKAIYLVTDFL 142
>sp|Q9UYC6|LONB_PYRAB Archaeal Lon protease OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=lon PE=3 SV=1
Length = 998
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 170 IEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQI 224
+ ++LP+ GV I+ A+E G+K + +NEK V L P++ EKI+I
Sbjct: 889 VRGEVLPV-GGVTPKIEAAIEAGIKKVIIPKANEKDV------FLSPDKREKIEI 936
>sp|Q7VWH8|PHNX_BORPE Phosphonoacetaldehyde hydrolase OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=phnX PE=3 SV=1
Length = 276
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 37/176 (21%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK-ERMTAYFNK 137
AL+FD G LVD F D F GV + L +G GK + + A N
Sbjct: 15 ALVFDWAGTLVDFGSFAPTKVFVDAFAR--FGVQ--ISLEQARGPMGMGKWDHIRALCN- 69
Query: 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLR-----------PGVAKLID 186
D +Q+ + T+ + I ++ LP++ PG +L+
Sbjct: 70 ---------DAAIARQYQEQFGRLPTDEDVTAIYERFLPMQLEKVAEYSQPIPGAIELLH 120
Query: 187 QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK-----IQIFAGDVVPRKKPDP 237
++G+K+ CS + ++ ERAE+ + A D VPR +P P
Sbjct: 121 GLRQRGLKLGSCSGYPAAVMQRVL------ERAEREGLALDYVVASDDVPRSRPAP 170
>sp|Q7W7R1|PHNX_BORPA Phosphonoacetaldehyde hydrolase OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=phnX PE=3 SV=1
Length = 276
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 37/176 (21%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK-ERMTAYFNK 137
AL+FD G LVD F D F GV + L +G GK + + A N
Sbjct: 15 ALVFDWAGTLVDFGSFAPTKVFVDAFAR--FGVQ--ISLEQARGPMGMGKWDHIRALCN- 69
Query: 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLR-----------PGVAKLID 186
D +Q+ + T+ + I ++ LP++ PG +L+
Sbjct: 70 ---------DAAIARQYQEQFGRLPTDEDVTAIYERFLPMQLEKVAEYSQPIPGAIELLH 120
Query: 187 QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK-----IQIFAGDVVPRKKPDP 237
++G+K+ CS + ++ ERAE+ + A D VPR +P P
Sbjct: 121 GLRQRGLKLGSCSGYPAAVMQRVL------ERAEREGLALDYVVASDDVPRSRPAP 170
>sp|Q7WL48|PHNX_BORBR Phosphonoacetaldehyde hydrolase OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=phnX PE=3
SV=1
Length = 276
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 37/176 (21%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK-ERMTAYFNK 137
AL+FD G LVD F D F GV + L +G GK + + A N
Sbjct: 15 ALVFDWAGTLVDFGSFAPTKVFVDAFAR--FGVQ--ISLEQARGPMGMGKWDHIRALCN- 69
Query: 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLR-----------PGVAKLID 186
D +Q+ + T+ + I ++ LP++ PG +L+
Sbjct: 70 ---------DAAIARQYQEQFGRLPTDEDVTAIYERFLPMQLEKVAEYSQPIPGAIELLH 120
Query: 187 QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK-----IQIFAGDVVPRKKPDP 237
++G+K+ CS + ++ ERAE+ + A D VPR +P P
Sbjct: 121 GLRQRGLKLGSCSGYPAAVMQRVL------ERAEREGLALDYVVASDDVPRSRPAP 170
>sp|P85226|VPN2_BPPHE Putative major capsid protein OS=Enterococcus phage phiEF24C PE=1
SV=2
Length = 464
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 142 EKAPSDEEERKQFIAS--LHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCS 199
E APSD +AS + +K ++ + + + RP + + LE G+ +
Sbjct: 322 ESAPSD-------VASVVIDDKKKQVKLEITINNMYQARPQYVAIYRKGLETGLFYQIAR 374
Query: 200 TSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVP 231
KAV +++F+ + E E +F G++ P
Sbjct: 375 VPASKAVEGVITFIDVNDEIPETADVFVGELTP 407
>sp|Q86ZR7|YKD3A_YEAST Putative uncharacterized hydrolase YKL033W-A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YKL033W-A
PE=1 SV=2
Length = 236
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELG-VTWDVDLYGELLKIGGGKERMTAYFNK 137
A LFD DG+L++TE D + + N+T E G +TWDV + + L +R+ ++
Sbjct: 9 ACLFDMDGLLINTE-DIYTETLNETLAEFGKGPLTWDVKIKLQGLPGPEAGKRVIEHY-- 65
Query: 138 TGWPEKAP---SDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVK 194
K P + +ER + SL E PG L+ K +
Sbjct: 66 -----KLPITLDEYDERNVALQSLKWGTCEFL------------PGALNLLKYLKLKNIP 108
Query: 195 VAVCSTSNEKAVTAIVSFL 213
+A+C++SN+ S L
Sbjct: 109 IALCTSSNKTKFRGKTSHL 127
>sp|A4SG14|HPRK_PROVI HPr kinase/phosphorylase OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=hprK PE=3 SV=1
Length = 332
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 148 EEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207
EEER+Q +L + K ++ KL P L++ A E+G+ V V S+ KA+
Sbjct: 83 EEERRQAFDNLVRFKVPCIILTSNNKLQP------DLLEMATEQGIPVFVTRHSSTKAIY 136
Query: 208 AIVSFL 213
+ FL
Sbjct: 137 QVTDFL 142
>sp|O58221|LONB_PYRHO Archaeal Lon protease OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0452 PE=3
SV=2
Length = 1127
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 170 IEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIF 225
+ ++LP+ GV I+ A+E G+K + SNEK V L P++ +KI+I
Sbjct: 1020 VRGEVLPV-GGVTPKIEAAIEAGIKTVIIPKSNEKDV------FLSPDKRKKIKII 1068
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,424,276
Number of Sequences: 539616
Number of extensions: 3442314
Number of successful extensions: 10527
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 10397
Number of HSP's gapped (non-prelim): 145
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)