Query 026252
Match_columns 241
No_of_seqs 144 out of 1060
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02779 haloacid dehalogenase 99.9 5.9E-23 1.3E-27 174.0 16.9 165 75-240 38-208 (286)
2 PLN02770 haloacid dehalogenase 99.9 1.2E-21 2.7E-26 162.9 15.1 149 75-240 20-170 (248)
3 COG0637 Predicted phosphatase/ 99.9 1E-21 2.2E-26 160.6 12.7 147 76-240 1-148 (221)
4 PLN03243 haloacid dehalogenase 99.9 2.3E-21 4.9E-26 162.1 14.6 150 75-240 22-171 (260)
5 PRK13226 phosphoglycolate phos 99.9 3.2E-21 7E-26 158.6 14.6 148 75-240 10-157 (229)
6 PRK13288 pyrophosphatase PpaX; 99.9 9.3E-21 2E-25 154.1 14.9 144 75-240 1-144 (214)
7 TIGR03351 PhnX-like phosphonat 99.9 1E-20 2.2E-25 154.5 15.0 148 77-240 1-151 (220)
8 PRK13478 phosphonoacetaldehyde 99.9 2.3E-20 5E-25 156.9 16.7 152 74-240 1-164 (267)
9 TIGR01422 phosphonatase phosph 99.9 2.3E-20 5.1E-25 155.6 16.3 149 77-240 2-162 (253)
10 PLN02575 haloacid dehalogenase 99.8 1.6E-20 3.5E-25 163.0 14.3 149 76-240 130-278 (381)
11 COG0546 Gph Predicted phosphat 99.8 5.2E-20 1.1E-24 150.5 16.6 149 75-239 2-150 (220)
12 PRK11587 putative phosphatase; 99.8 3.2E-20 6.9E-25 151.5 13.2 144 75-240 1-144 (218)
13 TIGR01449 PGP_bact 2-phosphogl 99.8 3.5E-20 7.6E-25 150.3 13.2 146 80-240 1-147 (213)
14 TIGR02009 PGMB-YQAB-SF beta-ph 99.8 4.1E-20 8.9E-25 146.7 13.0 147 77-240 1-148 (185)
15 PRK10826 2-deoxyglucose-6-phos 99.8 6.1E-20 1.3E-24 150.2 13.9 149 75-240 5-154 (222)
16 PRK10725 fructose-1-P/6-phosph 99.8 1.2E-19 2.6E-24 144.5 12.5 146 74-240 2-148 (188)
17 TIGR01990 bPGM beta-phosphoglu 99.8 2.9E-19 6.3E-24 141.8 14.4 145 79-240 1-147 (185)
18 TIGR02253 CTE7 HAD superfamily 99.8 3E-19 6.5E-24 145.7 12.2 64 175-240 93-156 (221)
19 PLN02940 riboflavin kinase 99.8 3.3E-19 7.2E-24 156.7 12.9 146 75-240 9-156 (382)
20 PRK13223 phosphoglycolate phos 99.8 8.5E-19 1.8E-23 147.7 14.5 153 75-240 11-163 (272)
21 PRK10563 6-phosphogluconate ph 99.8 5E-19 1.1E-23 144.6 12.2 146 75-240 2-148 (221)
22 PRK09449 dUMP phosphatase; Pro 99.8 1.2E-18 2.5E-23 142.6 13.8 147 76-240 2-156 (224)
23 PRK06698 bifunctional 5'-methy 99.8 9.6E-19 2.1E-23 157.6 14.1 150 74-240 238-391 (459)
24 TIGR02252 DREG-2 REG-2-like, H 99.8 6.6E-19 1.4E-23 142.0 11.7 145 78-240 1-166 (203)
25 PRK13222 phosphoglycolate phos 99.8 3.1E-18 6.7E-23 140.1 14.7 151 75-240 4-155 (226)
26 TIGR01428 HAD_type_II 2-haloal 99.8 1.2E-18 2.6E-23 140.0 10.3 64 175-240 91-154 (198)
27 TIGR01454 AHBA_synth_RP 3-amin 99.8 3E-18 6.5E-23 138.4 12.1 136 80-240 1-137 (205)
28 TIGR02254 YjjG/YfnB HAD superf 99.8 5.8E-18 1.3E-22 138.2 13.7 148 77-240 1-158 (224)
29 TIGR01548 HAD-SF-IA-hyp1 haloa 99.8 5.2E-18 1.1E-22 136.3 12.3 156 78-240 1-167 (197)
30 PRK14988 GMP/IMP nucleotidase; 99.8 2.7E-18 6E-23 140.7 10.0 64 175-240 92-155 (224)
31 PRK13225 phosphoglycolate phos 99.7 2.7E-17 5.9E-22 138.4 14.4 139 75-235 60-198 (273)
32 TIGR02247 HAD-1A3-hyp Epoxide 99.7 9.7E-18 2.1E-22 136.0 10.4 145 77-240 2-158 (211)
33 KOG2914 Predicted haloacid-hal 99.7 2E-17 4.4E-22 133.7 11.8 149 74-241 7-158 (222)
34 PF13419 HAD_2: Haloacid dehal 99.7 8.7E-18 1.9E-22 131.1 8.5 137 80-240 1-139 (176)
35 PLN02919 haloacid dehalogenase 99.7 4.1E-17 8.8E-22 159.1 14.9 150 75-240 73-224 (1057)
36 PRK10748 flavin mononucleotide 99.7 7.3E-17 1.6E-21 133.4 12.4 145 75-240 8-169 (238)
37 TIGR01549 HAD-SF-IA-v1 haloaci 99.7 1.1E-16 2.4E-21 123.4 10.1 124 79-240 1-124 (154)
38 COG1011 Predicted hydrolase (H 99.7 1.7E-16 3.7E-21 129.9 10.9 63 175-240 98-160 (229)
39 TIGR01993 Pyr-5-nucltdase pyri 99.7 8.4E-17 1.8E-21 127.8 8.1 136 78-240 1-147 (184)
40 TIGR01509 HAD-SF-IA-v3 haloaci 99.7 1.3E-15 2.9E-20 120.2 12.5 63 175-240 84-146 (183)
41 PRK09456 ?-D-glucose-1-phospha 99.6 1.2E-15 2.6E-20 122.8 10.1 64 175-240 83-147 (199)
42 TIGR01493 HAD-SF-IA-v2 Haloaci 99.6 1.9E-16 4.1E-21 124.7 3.2 57 175-240 89-145 (175)
43 PLN02811 hydrolase 99.6 9.1E-15 2E-19 119.5 11.7 139 84-240 1-143 (220)
44 KOG3085 Predicted hydrolase (H 99.6 1.1E-14 2.4E-19 118.3 8.5 157 75-240 5-174 (237)
45 PHA02597 30.2 hypothetical pro 99.5 3.8E-14 8.3E-19 113.7 9.5 134 76-240 1-136 (197)
46 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.5 1.8E-13 3.9E-18 109.8 11.7 61 175-237 79-139 (201)
47 TIGR00338 serB phosphoserine p 99.4 1.3E-12 2.8E-17 106.5 10.5 46 175-220 84-129 (219)
48 PRK09552 mtnX 2-hydroxy-3-keto 99.4 5.4E-12 1.2E-16 103.0 11.5 64 175-239 73-138 (219)
49 PLN02954 phosphoserine phospha 99.4 3.3E-12 7.1E-17 104.4 10.3 118 75-220 10-130 (224)
50 TIGR01672 AphA HAD superfamily 99.4 6.9E-12 1.5E-16 103.1 10.7 62 175-238 113-178 (237)
51 PRK11590 hypothetical protein; 99.3 3.2E-11 6.9E-16 98.0 11.3 126 76-216 5-136 (211)
52 TIGR01489 DKMTPPase-SF 2,3-dik 99.3 7.8E-11 1.7E-15 93.3 11.3 52 175-228 71-122 (188)
53 PRK13582 thrH phosphoserine ph 99.2 1.4E-10 3E-15 93.5 11.9 46 175-221 67-112 (205)
54 TIGR01684 viral_ppase viral ph 99.2 1.1E-10 2.4E-15 97.5 9.7 59 179-239 149-207 (301)
55 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.2 2.3E-10 4.9E-15 92.0 11.0 46 175-220 86-131 (202)
56 TIGR01691 enolase-ppase 2,3-di 99.2 1.4E-10 3E-15 94.6 9.0 62 175-240 94-158 (220)
57 TIGR03333 salvage_mtnX 2-hydro 99.2 5E-10 1.1E-14 91.1 12.0 66 175-240 69-135 (214)
58 TIGR01685 MDP-1 magnesium-depe 99.1 1.1E-11 2.4E-16 97.2 0.2 63 175-239 44-116 (174)
59 TIGR01656 Histidinol-ppas hist 99.1 9.9E-11 2.1E-15 89.7 4.3 66 175-240 26-107 (147)
60 PRK11133 serB phosphoserine ph 99.1 6E-10 1.3E-14 95.8 9.0 45 175-219 180-224 (322)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 99.1 5.6E-10 1.2E-14 87.2 8.0 60 177-240 43-114 (166)
62 PRK08942 D,D-heptose 1,7-bisph 99.0 4.5E-10 9.7E-15 89.0 6.3 62 175-240 28-109 (181)
63 cd01427 HAD_like Haloacid deha 99.0 4.1E-10 8.8E-15 83.7 5.5 57 175-233 23-79 (139)
64 COG0560 SerB Phosphoserine pho 99.0 3.2E-09 6.9E-14 86.2 10.9 46 175-220 76-121 (212)
65 TIGR02137 HSK-PSP phosphoserin 98.9 6.5E-09 1.4E-13 83.9 9.7 46 175-221 67-112 (203)
66 TIGR01545 YfhB_g-proteo haloac 98.9 6.8E-09 1.5E-13 84.2 9.6 43 175-217 93-136 (210)
67 PF06888 Put_Phosphatase: Puta 98.9 1E-08 2.2E-13 84.0 10.3 51 175-227 70-122 (234)
68 PRK08238 hypothetical protein; 98.9 3.8E-08 8.2E-13 89.0 14.0 59 175-238 71-129 (479)
69 TIGR01488 HAD-SF-IB Haloacid D 98.9 5E-08 1.1E-12 76.5 12.8 46 175-220 72-117 (177)
70 PHA03398 viral phosphatase sup 98.8 2.6E-08 5.6E-13 83.5 8.7 50 179-230 151-200 (303)
71 PRK11009 aphA acid phosphatase 98.8 3.1E-08 6.8E-13 81.5 9.0 59 175-237 113-177 (237)
72 KOG3109 Haloacid dehalogenase- 98.8 2.8E-08 6.1E-13 79.0 7.7 142 75-240 13-166 (244)
73 PF00702 Hydrolase: haloacid d 98.7 4.7E-08 1E-12 78.8 6.2 57 175-238 126-182 (215)
74 TIGR01663 PNK-3'Pase polynucle 98.6 1.1E-07 2.5E-12 86.4 8.1 60 177-240 198-269 (526)
75 TIGR01261 hisB_Nterm histidino 98.6 6.2E-08 1.3E-12 75.3 5.1 62 175-240 28-109 (161)
76 TIGR01544 HAD-SF-IE haloacid d 98.6 1.8E-06 3.8E-11 72.5 13.2 69 168-238 113-187 (277)
77 PRK06769 hypothetical protein; 98.6 6E-08 1.3E-12 76.3 3.8 64 175-240 27-99 (173)
78 TIGR01533 lipo_e_P4 5'-nucleot 98.5 7.4E-07 1.6E-11 74.5 9.6 59 175-235 117-178 (266)
79 PRK05446 imidazole glycerol-ph 98.5 1.9E-07 4.2E-12 81.1 6.2 62 175-240 29-110 (354)
80 TIGR02244 HAD-IG-Ncltidse HAD 98.5 1.8E-06 3.8E-11 74.7 11.9 53 175-229 183-243 (343)
81 KOG3120 Predicted haloacid deh 98.5 6.2E-07 1.3E-11 71.5 7.7 50 175-226 83-133 (256)
82 TIGR00213 GmhB_yaeD D,D-heptos 98.5 2.2E-07 4.8E-12 73.2 5.1 62 175-240 25-112 (176)
83 COG4359 Uncharacterized conser 98.5 4.1E-06 8.8E-11 65.0 11.7 52 175-226 72-123 (220)
84 KOG1615 Phosphoserine phosphat 98.4 5.6E-06 1.2E-10 64.9 12.0 44 174-217 86-129 (227)
85 TIGR01662 HAD-SF-IIIA HAD-supe 98.4 4.2E-07 9E-12 68.0 5.7 60 175-240 24-91 (132)
86 TIGR01686 FkbH FkbH-like domai 98.4 2.5E-07 5.5E-12 79.8 4.5 56 176-238 31-90 (320)
87 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 1.6E-07 3.5E-12 70.2 2.2 59 176-240 29-95 (128)
88 smart00577 CPDc catalytic doma 98.3 1E-06 2.2E-11 67.5 6.0 59 175-236 44-103 (148)
89 PF12710 HAD: haloacid dehalog 98.3 7.6E-06 1.6E-10 64.8 9.5 39 179-217 92-130 (192)
90 PF12689 Acid_PPase: Acid Phos 98.2 9.4E-07 2E-11 68.9 3.0 42 175-216 44-86 (169)
91 PHA02530 pseT polynucleotide k 98.1 4.1E-06 9E-11 71.5 4.3 64 175-240 186-257 (300)
92 TIGR01452 PGP_euk phosphoglyco 98.0 2E-06 4.4E-11 72.7 1.7 61 177-240 144-208 (279)
93 COG2179 Predicted hydrolase of 98.0 1.8E-05 3.8E-10 60.7 6.3 38 179-216 49-86 (175)
94 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.9 1.3E-06 2.8E-11 73.1 -1.1 62 177-240 121-185 (257)
95 TIGR01668 YqeG_hyp_ppase HAD s 97.9 2.4E-05 5.1E-10 61.4 5.0 55 175-240 42-97 (170)
96 PRK00192 mannosyl-3-phosphogly 97.9 5.6E-05 1.2E-09 63.7 7.6 41 179-219 24-64 (273)
97 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.9 2.4E-05 5.2E-10 64.8 5.2 53 175-229 23-78 (242)
98 PRK01158 phosphoglycolate phos 97.8 0.0001 2.2E-09 60.3 7.5 35 182-216 26-60 (230)
99 TIGR01675 plant-AP plant acid 97.7 0.00021 4.6E-09 58.4 8.9 44 175-218 119-165 (229)
100 PRK10513 sugar phosphate phosp 97.7 0.00024 5.2E-09 59.6 8.6 35 182-216 26-60 (270)
101 PRK10530 pyridoxal phosphate ( 97.6 0.00028 6E-09 59.1 7.7 18 76-93 2-19 (272)
102 PF13344 Hydrolase_6: Haloacid 97.6 0.00016 3.5E-09 51.6 5.3 52 175-228 13-67 (101)
103 TIGR01487 SPP-like sucrose-pho 97.6 0.00029 6.2E-09 57.1 7.3 38 179-216 21-58 (215)
104 PRK15126 thiamin pyrimidine py 97.6 0.00029 6.3E-09 59.2 7.6 18 76-93 1-18 (272)
105 TIGR01456 CECR5 HAD-superfamil 97.6 0.00014 3E-09 62.8 5.7 28 79-108 2-29 (321)
106 PF06941 NT5C: 5' nucleotidase 97.5 7.3E-05 1.6E-09 59.7 3.4 28 175-202 72-99 (191)
107 PF03767 Acid_phosphat_B: HAD 97.5 0.00031 6.6E-09 57.8 6.8 44 175-218 114-160 (229)
108 COG0561 Cof Predicted hydrolas 97.5 0.00035 7.7E-09 58.4 7.3 35 183-217 27-61 (264)
109 PRK10976 putative hydrolase; P 97.5 0.00041 8.9E-09 58.0 7.3 17 77-93 2-18 (266)
110 TIGR01680 Veg_Stor_Prot vegeta 97.3 0.0012 2.5E-08 55.2 8.2 44 175-218 144-190 (275)
111 COG4229 Predicted enolase-phos 97.3 0.00082 1.8E-08 52.4 6.3 38 175-212 102-139 (229)
112 PRK12702 mannosyl-3-phosphogly 97.3 0.0011 2.4E-08 56.0 7.5 39 181-219 23-61 (302)
113 PTZ00445 p36-lilke protein; Pr 97.2 0.0015 3.1E-08 52.5 7.2 62 176-239 75-162 (219)
114 TIGR01689 EcbF-BcbF capsule bi 97.2 0.0016 3.6E-08 48.3 6.7 30 176-205 24-53 (126)
115 PTZ00174 phosphomannomutase; P 97.1 0.0018 3.9E-08 53.8 7.2 19 75-93 3-21 (247)
116 TIGR02250 FCP1_euk FCP1-like p 97.1 0.0011 2.3E-08 51.2 5.3 53 175-229 57-110 (156)
117 PRK03669 mannosyl-3-phosphogly 97.0 0.0029 6.4E-08 53.2 7.5 34 183-216 31-64 (271)
118 PLN02887 hydrolase family prot 97.0 0.0027 5.8E-08 59.0 7.6 35 182-216 331-365 (580)
119 PF09419 PGP_phosphatase: Mito 96.9 0.0043 9.2E-08 48.4 7.3 21 74-94 38-58 (168)
120 TIGR02251 HIF-SF_euk Dullard-l 96.8 0.0027 5.8E-08 49.3 5.6 58 175-235 41-99 (162)
121 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.8 0.00027 6E-09 58.8 0.0 61 176-240 121-184 (249)
122 TIGR02726 phenyl_P_delta pheny 96.8 0.00081 1.8E-08 52.6 2.5 37 184-220 42-78 (169)
123 PRK14502 bifunctional mannosyl 96.8 0.005 1.1E-07 57.7 7.9 34 183-216 440-473 (694)
124 PLN02645 phosphoglycolate phos 96.7 0.00059 1.3E-08 58.7 1.0 55 184-240 178-236 (311)
125 COG1778 Low specificity phosph 96.6 0.003 6.6E-08 48.1 3.8 36 185-220 44-79 (170)
126 PLN02177 glycerol-3-phosphate 96.5 0.087 1.9E-06 48.2 13.9 36 177-216 111-147 (497)
127 PLN02645 phosphoglycolate phos 96.4 0.0073 1.6E-07 52.0 6.1 51 176-228 44-97 (311)
128 COG4996 Predicted phosphatase 96.3 0.0076 1.6E-07 44.5 4.3 50 175-226 40-89 (164)
129 TIGR01525 ATPase-IB_hvy heavy 96.2 0.0077 1.7E-07 56.0 5.5 46 175-220 383-429 (556)
130 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.2 0.00044 9.5E-09 57.2 -2.5 62 178-240 140-201 (242)
131 COG0647 NagD Predicted sugar p 96.2 0.011 2.5E-07 49.5 5.9 53 175-229 23-79 (269)
132 TIGR01512 ATPase-IB2_Cd heavy 96.1 0.0088 1.9E-07 55.4 5.0 46 175-220 361-407 (536)
133 COG2503 Predicted secreted aci 96.1 0.026 5.6E-07 46.2 6.8 45 175-219 121-169 (274)
134 TIGR01670 YrbI-phosphatas 3-de 95.9 0.011 2.4E-07 45.4 4.1 37 184-220 36-72 (154)
135 PF08645 PNK3P: Polynucleotide 95.9 0.01 2.3E-07 45.9 4.0 59 177-240 30-103 (159)
136 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.8 0.024 5.1E-07 47.2 5.8 50 177-228 18-70 (249)
137 TIGR01452 PGP_euk phosphoglyco 95.7 0.024 5.1E-07 48.0 5.7 51 176-228 18-71 (279)
138 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.6 0.03 6.5E-07 46.8 5.7 50 177-228 22-74 (257)
139 COG0241 HisB Histidinol phosph 95.5 0.036 7.7E-07 43.7 5.5 63 175-240 30-111 (181)
140 TIGR01522 ATPase-IIA2_Ca golgi 95.0 0.04 8.8E-07 54.1 5.6 53 176-230 528-580 (884)
141 TIGR01511 ATPase-IB1_Cu copper 95.0 0.043 9.2E-07 51.2 5.3 42 175-216 404-445 (562)
142 PRK10444 UMP phosphatase; Prov 94.9 0.065 1.4E-06 44.6 5.6 51 176-228 17-70 (248)
143 PLN02499 glycerol-3-phosphate 94.8 0.38 8.1E-06 43.8 10.7 28 184-212 101-128 (498)
144 PF05761 5_nucleotid: 5' nucle 94.7 0.063 1.4E-06 48.5 5.4 52 175-228 182-242 (448)
145 PLN02423 phosphomannomutase 94.7 0.028 6E-07 46.7 2.9 30 76-106 5-35 (245)
146 PF11019 DUF2608: Protein of u 94.0 0.23 5E-06 41.4 7.1 38 176-213 81-118 (252)
147 KOG2470 Similar to IMP-GMP spe 93.8 0.15 3.3E-06 44.0 5.6 50 175-226 239-291 (510)
148 TIGR01482 SPP-subfamily Sucros 93.5 0.043 9.3E-07 44.4 1.9 26 80-106 1-26 (225)
149 TIGR01460 HAD-SF-IIA Haloacid 93.5 0.2 4.3E-06 41.3 5.8 51 176-228 14-68 (236)
150 PRK11033 zntA zinc/cadmium/mer 93.3 0.16 3.5E-06 49.0 5.6 44 176-219 568-611 (741)
151 TIGR01662 HAD-SF-IIIA HAD-supe 93.2 0.047 1E-06 40.4 1.5 14 78-91 1-14 (132)
152 PRK10671 copA copper exporting 93.1 0.15 3.2E-06 49.9 5.1 45 176-220 650-694 (834)
153 COG4502 5'(3')-deoxyribonucleo 93.1 0.15 3.3E-06 38.3 3.9 51 175-228 67-123 (180)
154 PRK09484 3-deoxy-D-manno-octul 93.0 0.18 4E-06 39.8 4.7 37 184-220 56-92 (183)
155 PF05822 UMPH-1: Pyrimidine 5' 93.0 0.86 1.9E-05 37.8 8.6 46 170-215 84-129 (246)
156 TIGR01670 YrbI-phosphatas 3-de 92.9 0.049 1.1E-06 41.8 1.3 15 77-91 1-15 (154)
157 PRK09484 3-deoxy-D-manno-octul 92.7 0.059 1.3E-06 42.6 1.5 16 76-91 20-35 (183)
158 TIGR02463 MPGP_rel mannosyl-3- 92.7 0.3 6.5E-06 39.4 5.7 38 179-216 19-56 (221)
159 TIGR02461 osmo_MPG_phos mannos 92.6 0.33 7.1E-06 39.7 5.8 41 177-217 16-56 (225)
160 TIGR02726 phenyl_P_delta pheny 92.5 0.066 1.4E-06 41.9 1.5 16 76-91 6-21 (169)
161 PRK14501 putative bifunctional 92.5 0.33 7.1E-06 46.8 6.5 37 177-213 515-552 (726)
162 TIGR01681 HAD-SF-IIIC HAD-supe 92.2 0.086 1.9E-06 39.1 1.7 15 78-92 1-15 (128)
163 PF03031 NIF: NLI interacting 92.1 0.36 7.9E-06 36.9 5.3 52 175-229 35-87 (159)
164 smart00775 LNS2 LNS2 domain. T 92.1 0.1 2.2E-06 40.2 2.1 14 79-92 1-14 (157)
165 COG2217 ZntA Cation transport 92.1 0.25 5.5E-06 47.2 5.1 44 176-219 537-580 (713)
166 TIGR01497 kdpB K+-transporting 92.0 0.24 5.3E-06 47.0 4.9 44 176-219 446-489 (675)
167 PRK14010 potassium-transportin 92.0 0.29 6.2E-06 46.6 5.3 44 176-219 441-484 (673)
168 PRK01122 potassium-transportin 91.8 0.28 6.1E-06 46.7 5.1 44 176-219 445-488 (679)
169 PF05152 DUF705: Protein of un 91.5 0.59 1.3E-05 39.4 6.1 50 177-228 143-192 (297)
170 PF08282 Hydrolase_3: haloacid 91.5 0.13 2.9E-06 41.7 2.3 15 80-94 1-15 (254)
171 TIGR00099 Cof-subfamily Cof su 91.4 0.52 1.1E-05 39.0 5.8 41 176-216 16-56 (256)
172 PRK10444 UMP phosphatase; Prov 90.9 0.14 3E-06 42.6 1.8 17 77-93 1-17 (248)
173 COG0731 Fe-S oxidoreductases [ 90.7 0.46 9.9E-06 40.4 4.7 40 172-211 88-128 (296)
174 TIGR01482 SPP-subfamily Sucros 90.6 0.64 1.4E-05 37.5 5.5 41 176-216 15-55 (225)
175 TIGR00099 Cof-subfamily Cof su 90.3 0.19 4.2E-06 41.6 2.2 15 79-93 1-15 (256)
176 TIGR01486 HAD-SF-IIB-MPGP mann 90.2 0.77 1.7E-05 38.1 5.7 38 179-216 19-56 (256)
177 PF13344 Hydrolase_6: Haloacid 90.0 0.19 4E-06 35.7 1.6 15 80-94 1-15 (101)
178 TIGR01484 HAD-SF-IIB HAD-super 90.0 0.22 4.7E-06 39.7 2.2 14 79-92 1-14 (204)
179 COG0647 NagD Predicted sugar p 89.8 0.22 4.8E-06 41.9 2.1 21 74-94 5-25 (269)
180 KOG2882 p-Nitrophenyl phosphat 89.8 0.59 1.3E-05 39.6 4.6 37 176-212 38-74 (306)
181 TIGR01517 ATPase-IIB_Ca plasma 89.4 0.77 1.7E-05 45.6 5.9 52 176-229 579-630 (941)
182 TIGR01647 ATPase-IIIA_H plasma 89.2 0.76 1.6E-05 44.5 5.6 42 176-217 442-483 (755)
183 TIGR01116 ATPase-IIA1_Ca sarco 88.6 0.91 2E-05 45.0 5.8 42 176-217 537-578 (917)
184 PF03031 NIF: NLI interacting 88.4 0.22 4.7E-06 38.2 1.1 17 78-94 1-17 (159)
185 KOG0207 Cation transport ATPas 88.4 1.1 2.3E-05 43.5 5.8 39 176-214 723-761 (951)
186 TIGR02463 MPGP_rel mannosyl-3- 88.3 0.46 9.9E-06 38.4 3.0 14 80-93 2-15 (221)
187 PRK13762 tRNA-modifying enzyme 88.2 1.2 2.6E-05 38.6 5.7 32 173-204 139-170 (322)
188 smart00775 LNS2 LNS2 domain. T 88.2 1.3 2.8E-05 34.1 5.3 37 176-212 27-66 (157)
189 KOG4549 Magnesium-dependent ph 88.1 1.5 3.2E-05 32.4 5.1 43 175-217 43-86 (144)
190 PF08282 Hydrolase_3: haloacid 88.0 1 2.2E-05 36.4 5.0 41 176-216 15-55 (254)
191 TIGR02461 osmo_MPG_phos mannos 87.8 0.38 8.2E-06 39.3 2.2 15 79-93 1-15 (225)
192 TIGR01460 HAD-SF-IIA Haloacid 87.5 0.29 6.3E-06 40.2 1.4 15 80-94 1-15 (236)
193 KOG2882 p-Nitrophenyl phosphat 87.2 2.7 5.9E-05 35.7 6.9 19 75-93 20-38 (306)
194 TIGR01484 HAD-SF-IIB HAD-super 87.0 1.5 3.2E-05 34.9 5.2 39 175-213 16-54 (204)
195 TIGR01524 ATPase-IIIB_Mg magne 86.4 1.3 2.9E-05 43.5 5.5 41 176-216 515-555 (867)
196 PRK10517 magnesium-transportin 86.1 1.3 2.8E-05 43.8 5.2 41 176-216 550-590 (902)
197 COG0474 MgtA Cation transport 86.0 1.6 3.4E-05 43.3 5.7 56 175-230 546-601 (917)
198 PRK15122 magnesium-transportin 85.8 1.4 3E-05 43.7 5.2 41 176-216 550-590 (903)
199 PRK06769 hypothetical protein; 85.7 0.52 1.1E-05 36.8 1.9 18 74-91 1-18 (173)
200 KOG2116 Protein involved in pl 85.4 2.3 5.1E-05 39.8 6.1 18 76-93 529-546 (738)
201 PF08645 PNK3P: Polynucleotide 85.3 0.51 1.1E-05 36.4 1.6 16 78-93 1-16 (159)
202 KOG0202 Ca2+ transporting ATPa 85.1 1.9 4.1E-05 41.6 5.5 55 176-230 584-640 (972)
203 PRK10187 trehalose-6-phosphate 84.9 0.73 1.6E-05 38.7 2.6 14 78-91 15-28 (266)
204 TIGR01523 ATPase-IID_K-Na pota 84.7 1.9 4.2E-05 43.4 5.7 42 176-217 646-687 (1053)
205 TIGR01668 YqeG_hyp_ppase HAD s 84.5 0.98 2.1E-05 35.1 2.9 19 75-93 23-41 (170)
206 TIGR00685 T6PP trehalose-phosp 84.3 0.61 1.3E-05 38.5 1.8 16 77-92 3-18 (244)
207 COG4030 Uncharacterized protei 84.2 7.2 0.00016 32.0 7.7 41 174-215 81-121 (315)
208 smart00540 LEM in nuclear memb 84.1 1.2 2.7E-05 26.4 2.5 32 182-213 9-40 (44)
209 TIGR01456 CECR5 HAD-superfamil 84.1 1.2 2.6E-05 38.4 3.6 40 176-215 16-63 (321)
210 TIGR01486 HAD-SF-IIB-MPGP mann 84.0 0.76 1.7E-05 38.1 2.3 15 79-93 1-15 (256)
211 KOG3040 Predicted sugar phosph 83.3 2.6 5.6E-05 34.1 4.8 37 177-213 24-60 (262)
212 TIGR01106 ATPase-IIC_X-K sodiu 83.0 2.4 5.1E-05 42.5 5.5 41 176-216 568-608 (997)
213 TIGR01657 P-ATPase-V P-type AT 82.2 3.7 8E-05 41.5 6.6 42 176-217 656-697 (1054)
214 COG5663 Uncharacterized conser 81.2 7.2 0.00016 30.4 6.3 31 176-207 72-102 (194)
215 TIGR01485 SPP_plant-cyano sucr 80.9 1.7 3.8E-05 35.8 3.3 27 79-106 3-32 (249)
216 TIGR02495 NrdG2 anaerobic ribo 80.5 4.1 9E-05 32.0 5.2 31 174-204 72-102 (191)
217 TIGR01652 ATPase-Plipid phosph 80.0 2.8 6.1E-05 42.3 4.9 43 176-218 631-673 (1057)
218 TIGR00213 GmhB_yaeD D,D-heptos 80.0 1 2.2E-05 35.2 1.5 13 78-90 2-14 (176)
219 KOG3128 Uncharacterized conser 79.6 4.6 0.0001 33.6 5.1 43 175-217 137-179 (298)
220 TIGR02471 sucr_syn_bact_C sucr 79.5 1.3 2.8E-05 36.2 2.0 16 79-94 1-16 (236)
221 PLN02151 trehalose-phosphatase 78.4 1.7 3.6E-05 38.1 2.5 15 77-91 98-112 (354)
222 PF08235 LNS2: LNS2 (Lipin/Ned 78.2 1.2 2.6E-05 34.3 1.3 14 80-93 2-15 (157)
223 TIGR01485 SPP_plant-cyano sucr 77.5 5.9 0.00013 32.6 5.4 41 176-216 21-61 (249)
224 TIGR01494 ATPase_P-type ATPase 77.5 5 0.00011 36.9 5.4 40 176-215 347-386 (499)
225 PLN03017 trehalose-phosphatase 76.3 2.1 4.6E-05 37.6 2.5 13 77-89 111-123 (366)
226 COG5083 SMP2 Uncharacterized p 76.0 1.9 4E-05 38.6 2.0 19 76-94 374-392 (580)
227 KOG0323 TFIIF-interacting CTD 75.7 7.7 0.00017 36.6 6.1 56 175-232 200-256 (635)
228 TIGR02245 HAD_IIID1 HAD-superf 75.6 7.6 0.00017 31.1 5.3 40 176-216 45-84 (195)
229 COG4996 Predicted phosphatase 74.7 1.7 3.7E-05 32.4 1.2 16 78-93 1-16 (164)
230 COG3769 Predicted hydrolase (H 74.2 6.1 0.00013 32.3 4.4 37 181-217 28-64 (274)
231 TIGR03365 Bsubt_queE 7-cyano-7 73.9 3.3 7.1E-05 34.2 3.0 31 174-204 82-112 (238)
232 PRK10187 trehalose-6-phosphate 73.3 5.5 0.00012 33.4 4.2 39 175-213 35-74 (266)
233 COG4087 Soluble P-type ATPase 72.2 6.6 0.00014 29.3 3.8 41 175-216 29-69 (152)
234 KOG3189 Phosphomannomutase [Li 72.1 15 0.00032 29.6 6.0 28 78-106 12-39 (252)
235 TIGR02245 HAD_IIID1 HAD-superf 71.9 2.7 5.9E-05 33.6 1.9 18 75-92 19-36 (195)
236 PRK10076 pyruvate formate lyas 71.4 7.2 0.00016 31.6 4.3 37 175-211 49-88 (213)
237 COG1877 OtsB Trehalose-6-phosp 70.9 2.8 6.1E-05 35.2 1.9 19 75-93 16-34 (266)
238 TIGR02109 PQQ_syn_pqqE coenzym 70.6 9.7 0.00021 33.2 5.3 30 173-202 62-91 (358)
239 PLN02205 alpha,alpha-trehalose 70.5 3.4 7.4E-05 40.6 2.6 18 75-92 594-611 (854)
240 PF05116 S6PP: Sucrose-6F-phos 70.4 3.8 8.3E-05 33.9 2.6 27 78-105 3-29 (247)
241 KOG0206 P-type ATPase [General 70.3 57 0.0012 33.3 10.9 41 176-216 651-691 (1151)
242 PLN03190 aminophospholipid tra 70.0 9.5 0.00021 39.0 5.7 42 176-217 726-767 (1178)
243 TIGR01261 hisB_Nterm histidino 69.7 3.1 6.7E-05 32.1 1.8 16 78-93 2-17 (161)
244 smart00577 CPDc catalytic doma 69.7 3.2 7E-05 31.4 1.9 15 78-92 3-17 (148)
245 COG2216 KdpB High-affinity K+ 69.4 9.2 0.0002 35.2 4.8 44 176-219 447-490 (681)
246 COG3769 Predicted hydrolase (H 69.2 4.9 0.00011 32.8 2.8 15 76-90 6-20 (274)
247 TIGR03470 HpnH hopanoid biosyn 68.5 11 0.00024 32.5 5.1 30 173-202 81-110 (318)
248 PF03020 LEM: LEM domain; Int 68.5 0.73 1.6E-05 27.2 -1.5 31 183-213 10-40 (43)
249 TIGR02251 HIF-SF_euk Dullard-l 67.8 3.4 7.3E-05 31.9 1.7 16 78-93 2-17 (162)
250 PLN02580 trehalose-phosphatase 67.8 3.2 7E-05 36.8 1.7 17 77-93 119-135 (384)
251 cd05008 SIS_GlmS_GlmD_1 SIS (S 67.0 8.8 0.00019 27.7 3.7 33 176-208 57-89 (126)
252 PF05152 DUF705: Protein of un 66.4 4.2 9E-05 34.4 2.0 19 75-93 120-138 (297)
253 TIGR02493 PFLA pyruvate format 66.3 14 0.00031 30.0 5.2 39 173-211 74-117 (235)
254 PRK05301 pyrroloquinoline quin 65.6 14 0.00029 32.6 5.2 30 173-202 71-100 (378)
255 KOG0204 Calcium transporting A 65.2 16 0.00034 35.8 5.7 54 176-229 647-700 (1034)
256 PRK11145 pflA pyruvate formate 64.7 13 0.00028 30.5 4.7 31 173-203 79-110 (246)
257 cd05014 SIS_Kpsf KpsF-like pro 63.7 8.8 0.00019 27.8 3.2 33 176-208 58-90 (128)
258 PF02358 Trehalose_PPase: Treh 63.3 6.4 0.00014 32.2 2.6 13 81-93 1-13 (235)
259 TIGR02250 FCP1_euk FCP1-like p 61.1 5.9 0.00013 30.4 1.9 19 76-94 5-23 (156)
260 PF08235 LNS2: LNS2 (Lipin/Ned 61.0 25 0.00055 27.0 5.3 38 176-213 27-67 (157)
261 cd05710 SIS_1 A subgroup of th 60.3 13 0.00028 26.9 3.5 32 176-207 58-89 (120)
262 TIGR02826 RNR_activ_nrdG3 anae 60.3 21 0.00046 27.1 4.8 26 178-203 74-99 (147)
263 TIGR02471 sucr_syn_bact_C sucr 60.0 25 0.00055 28.5 5.6 33 183-216 22-54 (236)
264 TIGR02494 PFLE_PFLC glycyl-rad 59.6 17 0.00036 30.8 4.6 30 173-202 134-164 (295)
265 KOG2134 Polynucleotide kinase 59.3 8.6 0.00019 34.0 2.7 21 74-94 72-92 (422)
266 PF01380 SIS: SIS domain SIS d 58.0 19 0.0004 25.9 4.1 34 176-209 64-97 (131)
267 PF03332 PMM: Eukaryotic phosp 57.6 21 0.00045 29.1 4.5 29 181-210 1-29 (220)
268 KOG2961 Predicted hydrolase (H 55.9 13 0.00027 28.6 2.8 19 75-93 41-59 (190)
269 TIGR03127 RuMP_HxlB 6-phospho 55.6 16 0.00035 28.3 3.6 34 176-209 83-116 (179)
270 COG3700 AphA Acid phosphatase 54.9 40 0.00086 26.7 5.4 33 179-211 117-149 (237)
271 COG1911 RPL30 Ribosomal protei 54.5 24 0.00051 24.8 3.7 39 175-213 18-56 (100)
272 KOG1618 Predicted phosphatase 52.5 14 0.0003 31.9 2.8 18 77-94 35-52 (389)
273 PLN02382 probable sucrose-phos 52.5 16 0.00034 32.9 3.4 29 79-107 11-41 (413)
274 PHA01735 hypothetical protein 52.3 64 0.0014 21.1 5.6 52 152-204 7-58 (76)
275 TIGR03278 methan_mark_10 putat 51.4 31 0.00067 31.0 5.0 28 175-202 85-113 (404)
276 cd05006 SIS_GmhA Phosphoheptos 51.4 19 0.0004 28.0 3.3 30 176-205 112-141 (177)
277 COG1180 PflA Pyruvate-formate 51.2 26 0.00057 29.3 4.3 35 177-211 97-133 (260)
278 cd05013 SIS_RpiR RpiR-like pro 50.8 22 0.00048 25.6 3.5 30 178-207 73-102 (139)
279 cd05017 SIS_PGI_PMI_1 The memb 48.0 28 0.0006 25.0 3.6 27 176-202 54-80 (119)
280 cd04795 SIS SIS domain. SIS (S 47.9 26 0.00056 23.1 3.2 24 176-199 58-81 (87)
281 PF05761 5_nucleotid: 5' nucle 47.6 20 0.00044 32.5 3.3 20 74-93 9-28 (448)
282 KOG3189 Phosphomannomutase [Li 47.5 23 0.00051 28.5 3.2 50 175-228 27-76 (252)
283 TIGR00441 gmhA phosphoheptose 47.5 23 0.0005 26.8 3.2 32 176-207 90-121 (154)
284 PRK13937 phosphoheptose isomer 47.5 26 0.00056 27.6 3.6 32 176-207 117-148 (188)
285 cd05005 SIS_PHI Hexulose-6-pho 47.0 25 0.00054 27.3 3.4 33 176-208 86-118 (179)
286 PLN03063 alpha,alpha-trehalose 46.9 11 0.00024 36.8 1.7 17 77-93 507-523 (797)
287 PLN03017 trehalose-phosphatase 46.8 33 0.00071 30.3 4.3 35 175-210 132-166 (366)
288 COG1117 PstB ABC-type phosphat 46.1 30 0.00065 28.4 3.7 24 180-204 187-210 (253)
289 PLN03064 alpha,alpha-trehalose 45.6 12 0.00026 37.2 1.6 17 76-92 590-606 (934)
290 PF00578 AhpC-TSA: AhpC/TSA fa 44.9 62 0.0013 22.8 5.1 36 179-214 46-81 (124)
291 TIGR01658 EYA-cons_domain eyes 43.9 1.9E+02 0.0042 24.2 9.9 19 213-231 196-214 (274)
292 TIGR02668 moaA_archaeal probab 43.7 29 0.00063 29.4 3.6 29 174-202 66-95 (302)
293 PF05240 APOBEC_C: APOBEC-like 43.2 35 0.00076 21.3 2.9 23 179-201 2-24 (55)
294 PRK00414 gmhA phosphoheptose i 43.1 34 0.00073 27.1 3.6 32 176-207 122-153 (192)
295 COG5610 Predicted hydrolase (H 42.9 1.1E+02 0.0024 28.0 7.0 62 177-240 100-163 (635)
296 PLN02580 trehalose-phosphatase 41.6 49 0.0011 29.5 4.7 36 175-211 140-175 (384)
297 KOG2630 Enolase-phosphatase E- 41.5 51 0.0011 27.2 4.3 38 175-212 122-159 (254)
298 cd04906 ACT_ThrD-I_1 First of 41.2 43 0.00093 22.5 3.5 24 179-202 53-76 (85)
299 KOG0541 Alkyl hydroperoxide re 40.8 1.1E+02 0.0024 23.6 5.8 42 178-219 64-106 (171)
300 cd06589 GH31 The enzymes of gl 39.9 34 0.00074 28.5 3.4 27 176-202 63-89 (265)
301 PF00875 DNA_photolyase: DNA p 39.9 59 0.0013 24.7 4.5 36 179-214 53-88 (165)
302 PRK13938 phosphoheptose isomer 39.8 40 0.00086 26.9 3.5 32 176-207 124-155 (196)
303 PLN02151 trehalose-phosphatase 39.3 53 0.0011 28.9 4.5 36 175-211 119-154 (354)
304 PLN02423 phosphomannomutase 39.1 58 0.0013 26.8 4.6 35 176-211 24-58 (245)
305 PF13911 AhpC-TSA_2: AhpC/TSA 38.8 1.1E+02 0.0025 21.5 5.6 41 183-228 4-44 (115)
306 KOG1605 TFIIF-interacting CTD 38.7 20 0.00043 30.1 1.7 18 75-92 87-104 (262)
307 PHA02530 pseT polynucleotide k 38.6 22 0.00049 29.9 2.1 17 77-93 158-174 (300)
308 PRK13602 putative ribosomal pr 37.9 67 0.0015 21.6 4.0 39 175-213 10-48 (82)
309 COG0602 NrdG Organic radical a 37.6 43 0.00093 27.1 3.5 31 174-204 81-111 (212)
310 smart00266 CAD Domains present 37.1 22 0.00047 23.7 1.3 17 77-93 38-54 (74)
311 PRK13936 phosphoheptose isomer 36.8 46 0.001 26.4 3.5 33 176-208 122-154 (197)
312 cd06539 CIDE_N_A CIDE_N domain 36.3 23 0.00049 23.8 1.4 17 77-93 40-56 (78)
313 KOG1618 Predicted phosphatase 35.8 61 0.0013 28.2 4.1 42 175-216 50-99 (389)
314 cd06537 CIDE_N_B CIDE_N domain 35.5 24 0.00051 23.9 1.4 17 77-93 39-55 (81)
315 PRK01018 50S ribosomal protein 35.4 90 0.002 21.8 4.4 39 175-213 15-53 (99)
316 TIGR02666 moaA molybdenum cofa 35.0 1E+02 0.0022 26.6 5.6 29 174-202 69-99 (334)
317 PRK11382 frlB fructoselysine-6 34.9 49 0.0011 28.7 3.7 34 176-209 103-136 (340)
318 PRK13361 molybdenum cofactor b 34.8 96 0.0021 26.7 5.4 30 173-202 70-101 (329)
319 PRK10886 DnaA initiator-associ 34.5 48 0.001 26.5 3.2 34 176-209 120-153 (196)
320 PF01976 DUF116: Protein of un 34.5 73 0.0016 24.5 4.1 32 180-213 74-105 (158)
321 cd06595 GH31_xylosidase_XylS-l 34.1 48 0.0011 28.1 3.4 26 176-201 71-96 (292)
322 TIGR01101 V_ATP_synt_F vacuola 34.0 1.4E+02 0.0031 21.7 5.3 57 179-238 46-103 (115)
323 COG1763 MobB Molybdopterin-gua 34.0 46 0.001 25.7 2.9 22 182-203 20-41 (161)
324 PF00072 Response_reg: Respons 33.6 66 0.0014 21.9 3.6 41 180-220 57-99 (112)
325 PF06437 ISN1: IMP-specific 5' 33.5 36 0.00078 30.2 2.5 28 175-202 165-192 (408)
326 cd02071 MM_CoA_mut_B12_BD meth 32.9 98 0.0021 22.3 4.5 44 177-220 63-108 (122)
327 TIGR00377 ant_ant_sig anti-ant 32.9 87 0.0019 21.6 4.1 36 183-220 66-101 (108)
328 PRK11557 putative DNA-binding 32.9 56 0.0012 27.2 3.6 33 176-208 186-218 (278)
329 PF14213 DUF4325: Domain of un 32.8 60 0.0013 21.2 3.0 30 78-108 18-47 (74)
330 PF04472 DUF552: Protein of un 32.8 1.2E+02 0.0027 19.7 4.5 39 175-213 6-44 (73)
331 PRK15482 transcriptional regul 32.7 55 0.0012 27.5 3.5 34 175-208 192-225 (285)
332 COG2810 Predicted type IV rest 32.6 56 0.0012 27.0 3.3 27 176-202 81-107 (284)
333 PRK11337 DNA-binding transcrip 32.4 62 0.0013 27.2 3.8 33 176-208 198-230 (292)
334 PRK14129 heat shock protein Hs 32.2 42 0.00091 23.9 2.2 19 75-93 17-35 (105)
335 TIGR02886 spore_II_AA anti-sig 32.2 94 0.002 21.4 4.2 36 183-220 62-97 (106)
336 cd03018 PRX_AhpE_like Peroxire 32.0 1.3E+02 0.0029 21.9 5.2 14 188-201 80-93 (149)
337 PF13034 DUF3895: Protein of u 32.0 64 0.0014 21.7 2.9 34 171-204 40-73 (78)
338 PF01740 STAS: STAS domain; I 31.9 98 0.0021 21.7 4.3 36 182-219 70-105 (117)
339 cd01615 CIDE_N CIDE_N domain, 31.7 30 0.00065 23.3 1.3 17 77-93 40-56 (78)
340 KOG2469 IMP-GMP specific 5'-nu 31.6 36 0.00078 30.4 2.2 41 180-220 202-245 (424)
341 smart00481 POLIIIAc DNA polyme 31.5 66 0.0014 20.3 3.0 22 181-202 17-38 (67)
342 cd02971 PRX_family Peroxiredox 31.5 1.4E+02 0.0031 21.4 5.3 30 183-212 47-76 (140)
343 cd06536 CIDE_N_ICAD CIDE_N dom 31.5 29 0.00063 23.5 1.3 16 78-93 43-58 (80)
344 PRK11543 gutQ D-arabinose 5-ph 31.2 61 0.0013 27.6 3.6 33 176-208 100-132 (321)
345 PRK02947 hypothetical protein; 31.1 59 0.0013 26.9 3.4 27 176-202 117-143 (246)
346 PF13394 Fer4_14: 4Fe-4S singl 31.0 17 0.00037 25.9 0.1 29 179-207 65-95 (119)
347 COG3882 FkbH Predicted enzyme 31.0 27 0.00059 32.0 1.4 12 78-89 223-234 (574)
348 cd01335 Radical_SAM Radical SA 30.9 1.2E+02 0.0027 22.7 5.1 29 175-203 55-85 (204)
349 cd05007 SIS_Etherase N-acetylm 30.6 71 0.0015 26.6 3.8 33 176-208 129-161 (257)
350 COG3785 Uncharacterized conser 30.0 43 0.00094 23.8 2.0 20 74-93 25-44 (116)
351 cd03017 PRX_BCP Peroxiredoxin 30.0 1.5E+02 0.0033 21.3 5.2 20 183-202 70-89 (140)
352 PF13588 HSDR_N_2: Type I rest 30.0 52 0.0011 23.2 2.5 25 179-203 68-92 (112)
353 PLN02951 Molybderin biosynthes 29.9 1.2E+02 0.0027 26.7 5.3 30 173-202 115-146 (373)
354 cd06591 GH31_xylosidase_XylS X 29.7 62 0.0013 27.8 3.4 26 175-200 62-87 (319)
355 cd06594 GH31_glucosidase_YihQ 29.5 63 0.0014 27.8 3.4 27 175-201 67-93 (317)
356 cd06598 GH31_transferase_CtsZ 29.5 62 0.0013 27.8 3.3 27 175-201 66-92 (317)
357 cd06599 GH31_glycosidase_Aec37 29.3 66 0.0014 27.7 3.5 27 175-201 69-95 (317)
358 PF12990 DUF3874: Domain of un 29.3 1.2E+02 0.0025 20.1 3.9 34 181-216 28-61 (73)
359 PF13353 Fer4_12: 4Fe-4S singl 29.3 55 0.0012 23.8 2.7 25 178-202 69-94 (139)
360 COG2044 Predicted peroxiredoxi 29.2 93 0.002 22.8 3.6 28 175-202 58-85 (120)
361 COG0036 Rpe Pentose-5-phosphat 28.9 1.3E+02 0.0027 24.7 4.7 39 175-213 92-132 (220)
362 PF14824 Sirohm_synth_M: Siroh 28.9 1E+02 0.0023 16.6 3.1 23 190-212 2-24 (30)
363 TIGR02803 ExbD_1 TonB system t 28.7 74 0.0016 23.0 3.2 25 176-200 96-121 (122)
364 PLN02205 alpha,alpha-trehalose 28.7 1E+02 0.0022 30.6 5.0 37 176-212 616-653 (854)
365 TIGR00640 acid_CoA_mut_C methy 28.6 1.2E+02 0.0026 22.4 4.3 42 179-220 68-111 (132)
366 cd07041 STAS_RsbR_RsbS_like Su 28.5 1.4E+02 0.0031 20.6 4.6 35 183-219 64-99 (109)
367 cd06592 GH31_glucosidase_KIAA1 28.4 68 0.0015 27.4 3.4 26 176-201 67-92 (303)
368 PF08444 Gly_acyl_tr_C: Aralky 28.2 1.1E+02 0.0024 21.2 3.7 32 183-214 43-74 (89)
369 PF08620 RPAP1_C: RPAP1-like, 27.8 23 0.0005 23.5 0.3 8 82-89 5-12 (73)
370 cd06597 GH31_transferase_CtsY 27.6 71 0.0015 27.8 3.4 25 177-201 83-107 (340)
371 PF13580 SIS_2: SIS domain; PD 27.2 70 0.0015 23.7 2.9 25 176-200 114-138 (138)
372 PTZ00106 60S ribosomal protein 27.0 1.3E+02 0.0029 21.4 4.2 39 175-213 24-62 (108)
373 PF03465 eRF1_3: eRF1 domain 3 27.0 1.8E+02 0.0038 20.8 4.9 34 181-215 71-104 (113)
374 cd06538 CIDE_N_FSP27 CIDE_N do 26.9 39 0.00085 22.8 1.3 16 78-93 40-55 (79)
375 PRK13601 putative L7Ae-like ri 26.8 1.5E+02 0.0034 20.0 4.2 38 176-213 8-45 (82)
376 cd07043 STAS_anti-anti-sigma_f 26.8 1.5E+02 0.0032 19.7 4.4 36 183-220 61-96 (99)
377 cd06593 GH31_xylosidase_YicI Y 26.8 75 0.0016 27.1 3.4 26 175-200 62-87 (308)
378 TIGR00393 kpsF KpsF/GutQ famil 26.7 79 0.0017 26.0 3.5 30 176-205 58-87 (268)
379 PF03193 DUF258: Protein of un 26.7 1.5E+02 0.0033 22.9 4.7 32 182-213 2-33 (161)
380 PF01113 DapB_N: Dihydrodipico 26.6 1.5E+02 0.0032 21.4 4.5 38 176-213 75-112 (124)
381 PF10740 DUF2529: Protein of u 26.6 68 0.0015 25.1 2.7 21 179-199 95-115 (172)
382 PF02593 dTMP_synthase: Thymid 26.1 1.7E+02 0.0036 23.9 5.0 53 175-229 58-116 (217)
383 PRK10892 D-arabinose 5-phospha 26.0 81 0.0018 27.0 3.5 31 176-206 105-135 (326)
384 PF02017 CIDE-N: CIDE-N domain 25.8 45 0.00097 22.4 1.4 17 77-93 40-56 (78)
385 cd06603 GH31_GANC_GANAB_alpha 25.4 83 0.0018 27.3 3.4 27 175-201 60-86 (339)
386 PF13686 DrsE_2: DsrE/DsrF/Drs 25.4 69 0.0015 24.3 2.6 23 179-201 91-113 (148)
387 PRK05441 murQ N-acetylmuramic 25.2 95 0.0021 26.5 3.7 31 176-206 142-172 (299)
388 TIGR00274 N-acetylmuramic acid 25.0 98 0.0021 26.4 3.7 30 177-206 138-167 (291)
389 COG1877 OtsB Trehalose-6-phosp 24.8 1.2E+02 0.0026 25.6 4.1 37 175-211 39-76 (266)
390 PRK01395 V-type ATP synthase s 24.6 1.7E+02 0.0037 20.7 4.4 41 179-220 32-72 (104)
391 PRK06683 hypothetical protein; 24.4 1.9E+02 0.004 19.5 4.3 39 175-213 10-48 (82)
392 KOG2469 IMP-GMP specific 5'-nu 24.4 1.1E+02 0.0023 27.5 3.8 20 74-93 24-43 (424)
393 PF02358 Trehalose_PPase: Treh 24.3 96 0.0021 25.1 3.4 31 175-205 18-49 (235)
394 COG1126 GlnQ ABC-type polar am 24.0 80 0.0017 26.0 2.8 38 175-213 169-206 (240)
395 KOG3040 Predicted sugar phosph 24.0 50 0.0011 26.9 1.6 37 180-216 160-197 (262)
396 PF00696 AA_kinase: Amino acid 23.9 1.2E+02 0.0027 24.4 4.0 40 179-219 20-59 (242)
397 cd03409 Chelatase_Class_II Cla 23.8 1E+02 0.0022 21.0 3.1 21 177-197 43-63 (101)
398 COG0826 Collagenase and relate 23.8 1.9E+02 0.0042 25.3 5.4 23 179-201 49-71 (347)
399 COG0678 AHP1 Peroxiredoxin [Po 23.7 2.2E+02 0.0049 21.9 4.9 40 178-217 58-98 (165)
400 cd06600 GH31_MGAM-like This fa 23.6 91 0.002 26.8 3.3 27 175-201 60-86 (317)
401 COG1737 RpiR Transcriptional r 23.4 85 0.0018 26.5 3.0 36 176-211 188-223 (281)
402 TIGR02765 crypto_DASH cryptoch 23.3 1.1E+02 0.0023 27.5 3.8 20 181-201 84-104 (429)
403 COG4750 LicC CTP:phosphocholin 23.1 1.7E+02 0.0037 23.6 4.4 33 181-213 34-67 (231)
404 COG4161 ArtP ABC-type arginine 23.1 25 0.00055 27.6 -0.2 37 45-90 137-173 (242)
405 PF13439 Glyco_transf_4: Glyco 23.0 1.1E+02 0.0024 22.4 3.4 22 181-202 18-39 (177)
406 COG4275 Uncharacterized conser 22.8 41 0.00089 24.9 0.8 35 76-112 44-78 (143)
407 PF05116 S6PP: Sucrose-6F-phos 22.8 1.5E+02 0.0032 24.4 4.3 43 183-228 26-68 (247)
408 KOG3107 Predicted haloacid deh 22.7 1.7E+02 0.0036 26.2 4.6 16 77-92 197-212 (468)
409 PRK11302 DNA-binding transcrip 22.4 1.2E+02 0.0025 25.3 3.7 26 176-201 186-211 (284)
410 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.3 1.2E+02 0.0026 22.2 3.5 25 179-203 76-100 (153)
411 PF02635 DrsE: DsrE/DsrF-like 22.3 1.1E+02 0.0025 21.2 3.2 26 176-201 58-84 (122)
412 PF04055 Radical_SAM: Radical 22.3 1.7E+02 0.0036 21.2 4.3 41 174-214 55-100 (166)
413 COG1852 Uncharacterized conser 21.9 1.5E+02 0.0033 23.7 3.9 30 181-212 122-151 (209)
414 PRK07714 hypothetical protein; 21.6 2.2E+02 0.0048 19.8 4.4 38 175-212 17-54 (100)
415 PF05988 DUF899: Bacterial pro 21.6 3.2E+02 0.0068 22.2 5.7 36 181-216 95-130 (211)
416 PHA02416 hypothetical protein 21.5 1.5E+02 0.0033 21.4 3.5 40 179-219 12-51 (167)
417 PF11848 DUF3368: Domain of un 21.5 1E+02 0.0022 18.3 2.3 31 176-212 16-46 (48)
418 cd06602 GH31_MGAM_SI_GAA This 21.4 97 0.0021 26.9 3.1 26 176-201 61-88 (339)
419 PLN03064 alpha,alpha-trehalose 21.4 1.6E+02 0.0034 29.7 4.8 38 176-213 622-660 (934)
420 PF08544 GHMP_kinases_C: GHMP 21.3 2.4E+02 0.0052 18.2 6.0 39 175-213 30-79 (85)
421 PRK05583 ribosomal protein L7A 21.2 2.2E+02 0.0048 20.1 4.3 39 175-213 16-54 (104)
422 TIGR01290 nifB nitrogenase cof 21.2 1.8E+02 0.0038 26.5 4.7 37 175-211 90-131 (442)
423 cd06601 GH31_lyase_GLase GLase 21.1 1.1E+02 0.0024 26.6 3.4 26 175-200 60-85 (332)
424 cd06604 GH31_glucosidase_II_Ma 21.0 1.1E+02 0.0024 26.5 3.4 26 175-200 60-85 (339)
425 PF08965 DUF1870: Domain of un 20.8 1.1E+02 0.0023 22.4 2.6 28 164-191 30-57 (118)
426 PF02484 Rhabdo_NV: Rhabdoviru 20.6 91 0.002 21.5 2.1 27 78-107 26-52 (111)
427 TIGR00685 T6PP trehalose-phosp 20.5 1.2E+02 0.0025 24.9 3.2 32 175-206 24-56 (244)
428 TIGR02097 yccV hemimethylated 20.5 80 0.0017 22.4 1.9 19 75-93 15-33 (101)
429 PLN03063 alpha,alpha-trehalose 20.3 1.9E+02 0.0041 28.5 5.1 37 176-212 532-569 (797)
430 PF06901 FrpC: RTX iron-regula 20.1 56 0.0012 26.1 1.2 13 78-90 59-71 (271)
No 1
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=5.9e-23 Score=174.04 Aligned_cols=165 Identities=70% Similarity=1.141 Sum_probs=122.6
Q ss_pred CCCcEEEEecCcccccCc-cchHHHHHHHHHHhhcC-CCCCCHHHHHHHHHhCCchHHHHHHHHhcCCC----CCCCCCH
Q 026252 75 VLPSALLFDCDGVLVDTE-KDGHRISFNDTFKEKEL-GVTWDVDLYGELLKIGGGKERMTAYFNKTGWP----EKAPSDE 148 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~-~~~~~~a~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 148 (241)
..+++|||||||||+|+. .. +..+|+++++++|. ...++.+.+..+...+.+...+..++...+|+ ...+..+
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~-~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDG-HRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccHH-HHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHHcCCCccccccCCccc
Confidence 457999999999999999 75 88899999999998 43455555544434666666666666555554 2122234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 149 EERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
+..++..+.+...+.+.|...+....++++||+.++|+.|+++|++++|+||+....+..+++.+++..+|+...+++++
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 196 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGD 196 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEecc
Confidence 44455566666666677777665554689999999999999999999999999999999999877544555422355888
Q ss_pred CCCCCCCCCCCC
Q 026252 229 VVPRKKPDPLCC 240 (241)
Q Consensus 229 ~~~~~KP~p~~f 240 (241)
+++..||+|++|
T Consensus 197 ~~~~~KP~p~~~ 208 (286)
T PLN02779 197 DVPKKKPDPDIY 208 (286)
T ss_pred ccCCCCCCHHHH
Confidence 888999999876
No 2
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.88 E-value=1.2e-21 Score=162.89 Aligned_cols=149 Identities=23% Similarity=0.295 Sum_probs=109.5
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCC--CCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELG--VTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERK 152 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (241)
.++++|||||||||+|+... +..+|+++++++|.. .+...+.+... ..|.........+... ..+...
T Consensus 20 ~~~k~viFDlDGTLiDs~~~-~~~a~~~~~~~~g~~~g~~~~~~~~~~~-~~G~~~~~~~~~~~~~--------~~~~~~ 89 (248)
T PLN02770 20 APLEAVLFDVDGTLCDSDPL-HYYAFREMLQEINFNGGVPITEEFFVEN-IAGKHNEDIALGLFPD--------DLERGL 89 (248)
T ss_pred CccCEEEEcCCCccCcCHHH-HHHHHHHHHHHhccccCCCCCHHHHHHH-cCCCCHHHHHHHHcCc--------chhhHH
Confidence 56899999999999999985 888999999999764 23334433222 2455555544332211 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCC
Q 026252 153 QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR 232 (241)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~ 232 (241)
++...+.+.|...... ...++||+.++|+.|+++|++++|+||+.+..++..++++++.++|+ .++++++++.
T Consensus 90 ----~~~~~~~~~y~~~~~~-~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd--~iv~~~~~~~ 162 (248)
T PLN02770 90 ----KFTDDKEALFRKLASE-QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQ--AVIIGSECEH 162 (248)
T ss_pred ----HHHHHHHHHHHHHHHh-cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCc--EEEecCcCCC
Confidence 1222333444443332 37899999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCCCCCC
Q 026252 233 KKPDPLCC 240 (241)
Q Consensus 233 ~KP~p~~f 240 (241)
.||+|++|
T Consensus 163 ~KP~p~~~ 170 (248)
T PLN02770 163 AKPHPDPY 170 (248)
T ss_pred CCCChHHH
Confidence 99999886
No 3
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.87 E-value=1e-21 Score=160.58 Aligned_cols=147 Identities=29% Similarity=0.413 Sum_probs=106.4
Q ss_pred CCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-hcCCCCCCCCCHHHHHHH
Q 026252 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (241)
++++|||||||||+|+++. +..+|.++++++|...+ .+..... .|.........+. ..+... .......+..
T Consensus 1 ~~~avIFD~DGvLvDse~~-~~~a~~~~~~~~g~~~~--~~~~~~~--~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 73 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPL-HARAWLEALKEYGIEIS--DEEIREL--HGGGIARIIDLLRKLAAGED--PADLAELERL 73 (221)
T ss_pred CCcEEEEcCCCCcCcchHH-HHHHHHHHHHHcCCCCC--HHHHHHH--HCCChHHHHHHHHHHhcCCc--ccCHHHHHHH
Confidence 4799999999999999995 99999999999988754 3444443 4444333333322 221100 0011111111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
.. +.+. .......+.||+.++|+.|+++|+++++.||+.+..+...|+.+|+.++|+ .+++++++...|
T Consensus 74 ~~-------~~~~--~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~--~~v~~~dv~~~K 142 (221)
T COG0637 74 LY-------EAEA--LELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFD--VIVTADDVARGK 142 (221)
T ss_pred HH-------HHHH--hhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcc--hhccHHHHhcCC
Confidence 11 1111 122347999999999999999999999999999999999999999999999 789999999999
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 143 P~Pd~y 148 (221)
T COG0637 143 PAPDIY 148 (221)
T ss_pred CCCHHH
Confidence 999998
No 4
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.87 E-value=2.3e-21 Score=162.05 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=111.0
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
..+|+|||||||||+|+....+..+|+++++++|..... .+..... .|.+.......+.... ...+..+++
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~-~e~~~~~--~G~~~~~~~~~l~~~~------~~~~~~~~l 92 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPP-AFLLKRA--EGMKNEQAISEVLCWS------RDFLQMKRL 92 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCH-HHHHHHh--cCCCHHHHHHHHhccC------CCHHHHHHH
Confidence 458999999999999997544677999999999886542 2233333 6777666655543211 122222222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
. ..+.+.+. ........++||+.++|+.|+++|++++|+||+....+..+++++|+..+|+ .++++++++..|
T Consensus 93 ~----~~~~~~~~-~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd--~ii~~~d~~~~K 165 (260)
T PLN03243 93 A----IRKEDLYE-YMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFS--VVLAAEDVYRGK 165 (260)
T ss_pred H----HHHHHHHH-HHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCc--EEEecccCCCCC
Confidence 2 22233332 2233347899999999999999999999999999999999999999999999 899999999999
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 166 P~Pe~~ 171 (260)
T PLN03243 166 PDPEMF 171 (260)
T ss_pred CCHHHH
Confidence 999887
No 5
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.87 E-value=3.2e-21 Score=158.56 Aligned_cols=148 Identities=22% Similarity=0.310 Sum_probs=109.7
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
.|+++|||||||||+|+.+. +..+|+.+++++|... ++.+.+... .|.+.......... .......++.
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~-~~~a~~~~~~~~g~~~-~~~~~~~~~--~g~~~~~~~~~~~~-------~~~~~~~~~~ 78 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPD-MLATVNAMLAARGRAP-ITLAQLRPV--VSKGARAMLAVAFP-------ELDAAARDAL 78 (229)
T ss_pred ccCCEEEEcCcCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hhhHHHHHHHHHhc-------cCChHHHHHH
Confidence 45799999999999999995 8889999999998863 344555443 44444444333211 1123333444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
.+.+.. .|.+.... ..+++||+.++|+.|+++|++++|+||+....+...++.+++..+|+ .++++++++..|
T Consensus 79 ~~~~~~----~~~~~~~~-~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~K 151 (229)
T PRK13226 79 IPEFLQ----RYEALIGT-QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCA--VLIGGDTLAERK 151 (229)
T ss_pred HHHHHH----HHHHhhhh-cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhccc--EEEecCcCCCCC
Confidence 444333 33332222 36899999999999999999999999999999999999999999998 788888888999
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 152 P~p~~~ 157 (229)
T PRK13226 152 PHPLPL 157 (229)
T ss_pred CCHHHH
Confidence 999876
No 6
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.86 E-value=9.3e-21 Score=154.13 Aligned_cols=144 Identities=21% Similarity=0.208 Sum_probs=106.6
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
|++++||||+||||+|+... +..+|++++++++... ...+.+... .|.+.......+ .+...+++
T Consensus 1 m~~~~viFD~DGTL~ds~~~-~~~a~~~~~~~~~~~~-~~~~~~~~~--~G~~~~~~~~~~-----------~~~~~~~~ 65 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNEL-IISSFLHTLKTYYPNQ-YKREDVLPF--IGPSLHDTFSKI-----------DESKVEEM 65 (214)
T ss_pred CCccEEEEeCCCcCccCHHH-HHHHHHHHHHHhCCCC-CCHHHHHHH--hCcCHHHHHHhc-----------CHHHHHHH
Confidence 35899999999999999985 8889999999987643 234444443 455544333221 12222333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
...+. +.+..... ....++||+.++|+.|+++|++++|+||+.+..+...++.+|+..+|+ .++++++++..|
T Consensus 66 ~~~~~----~~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~--~i~~~~~~~~~K 138 (214)
T PRK13288 66 ITTYR----EFNHEHHD-ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFD--VVITLDDVEHAK 138 (214)
T ss_pred HHHHH----HHHHHhhh-hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhcee--EEEecCcCCCCC
Confidence 33222 22222222 236899999999999999999999999999999999999999999999 899999999999
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 139 p~p~~~ 144 (214)
T PRK13288 139 PDPEPV 144 (214)
T ss_pred CCcHHH
Confidence 999876
No 7
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.86 E-value=1e-20 Score=154.47 Aligned_cols=148 Identities=17% Similarity=0.166 Sum_probs=111.4
Q ss_pred CcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-hcCCCCCCCCCHHHHHHHH
Q 026252 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQFI 155 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (241)
+|+||||+||||+|+.+. +..+|+++++++|.... .+++... ..|.....+.+.+. ..+. ..+..+++.
T Consensus 1 ~k~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~~--~~~~~~~-~~g~~~~~~~~~~~~~~~~------~~~~~~~~~ 70 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGL-VYRALRQAVTAAGLSPT--PEEVQSA-WMGQSKIEAIRALLALDGA------DEAEAQAAF 70 (220)
T ss_pred CcEEEEecCCCeeccCch-HHHHHHHHHHHcCCCCC--HHHHHHh-hcCCCHHHHHHHHHhccCC------CHHHHHHHH
Confidence 589999999999999995 88999999999887643 3444432 25666666555433 2222 223333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC--CCcccceEEecCCCCCC
Q 026252 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP--ERAEKIQIFAGDVVPRK 233 (241)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~--~~f~~~~iv~s~~~~~~ 233 (241)
..+ .+.+.+.+.....+++||+.++|+.|+++|++++|+||+....+...++.+++. .+|+ .++++++++..
T Consensus 71 ~~~----~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~--~i~~~~~~~~~ 144 (220)
T TIGR03351 71 ADF----EERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD--AVVCPSDVAAG 144 (220)
T ss_pred HHH----HHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC--EEEcCCcCCCC
Confidence 333 333433334344689999999999999999999999999999999999999988 8998 89999999999
Q ss_pred CCCCCCC
Q 026252 234 KPDPLCC 240 (241)
Q Consensus 234 KP~p~~f 240 (241)
||+|++|
T Consensus 145 KP~p~~~ 151 (220)
T TIGR03351 145 RPAPDLI 151 (220)
T ss_pred CCCHHHH
Confidence 9999876
No 8
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.86 E-value=2.3e-20 Score=156.89 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=105.8
Q ss_pred CCCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHH-----------HhcCCCC
Q 026252 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYF-----------NKTGWPE 142 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 142 (241)
|+++|+||||+||||+|+....+..+|+++++++|.+. +.+.+... .|.+.......+ ...+.
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~g~-- 74 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEI--TLEEARGP--MGLGKWDHIRALLKMPRVAARWQAVFGR-- 74 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCC--CHHHHHHh--cCCCHHHHHHHHHhcHHHHHHHHHHhCC--
Confidence 46789999999999999975334679999999998753 33444333 444433222111 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc-cc
Q 026252 143 KAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-EK 221 (241)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f-~~ 221 (241)
....+..+++...+. +.+.+.... ...++||+.++|+.|+++|++++|+||+.+..+..+++.+++..+| +
T Consensus 75 --~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d- 146 (267)
T PRK13478 75 --LPTEADVDALYAAFE----PLQIAKLAD-YATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPD- 146 (267)
T ss_pred --CCCHHHHHHHHHHHH----HHHHHHHhh-cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCce-
Confidence 112333333333333 333332322 3689999999999999999999999999999999999998888875 5
Q ss_pred ceEEecCCCCCCCCCCCCC
Q 026252 222 IQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 222 ~~iv~s~~~~~~KP~p~~f 240 (241)
.++++++++..||+|++|
T Consensus 147 -~i~~~~~~~~~KP~p~~~ 164 (267)
T PRK13478 147 -HVVTTDDVPAGRPYPWMA 164 (267)
T ss_pred -EEEcCCcCCCCCCChHHH
Confidence 789999999999999876
No 9
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.85 E-value=2.3e-20 Score=155.59 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=104.8
Q ss_pred CcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHH-----------HhcCCCCCCC
Q 026252 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYF-----------NKTGWPEKAP 145 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 145 (241)
+++||||+||||+|+....+..+|++++.++|... ..+.+... .|.+.......+ ...+. .
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 73 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQI--TLEEARGP--MGLGKWDHIRALLKMPAVAERWRAKFGR----L 73 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCc--cHHHHHHh--cCccHHHHHHHHhcCHHHHHHHHHHhCC----C
Confidence 68999999999999975335679999999988753 34444433 444433222211 11121 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc-ccceE
Q 026252 146 SDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-EKIQI 224 (241)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f-~~~~i 224 (241)
...+..+++.+.+ .+.+.+.... ...++||+.++|+.|+++|++++|+||+....++.+++.+|+..+| + .|
T Consensus 74 ~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d--~i 146 (253)
T TIGR01422 74 PTEADIEAIYEAF----EPLQLAKLAE-YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPD--YN 146 (253)
T ss_pred CCHHHHHHHHHHH----HHHHHHHHHh-cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCc--eE
Confidence 1223333333333 3333333322 3789999999999999999999999999999999999999999986 6 78
Q ss_pred EecCCCCCCCCCCCCC
Q 026252 225 FAGDVVPRKKPDPLCC 240 (241)
Q Consensus 225 v~s~~~~~~KP~p~~f 240 (241)
+++++++..||+|++|
T Consensus 147 i~~~~~~~~KP~p~~~ 162 (253)
T TIGR01422 147 VTTDDVPAGRPAPWMA 162 (253)
T ss_pred EccccCCCCCCCHHHH
Confidence 9999999999999886
No 10
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.85 E-value=1.6e-20 Score=162.97 Aligned_cols=149 Identities=19% Similarity=0.216 Sum_probs=113.3
Q ss_pred CCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 026252 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (241)
..++|||||||||+|+.+..+..+|+++++++|.... ..+....+ .|.+.......+.... ......+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~-~~e~~~~~--~G~~~~~~l~~ll~~~------~~~~~~e--- 197 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPP-PAFILRRV--EGMKNEQAISEVLCWS------RDPAELR--- 197 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCC-HHHHHHHh--cCCCHHHHHHHHhhcc------CCHHHHH---
Confidence 6899999999999999875466799999999988643 23333443 6777666655443221 1222333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCC
Q 026252 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (241)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP 235 (241)
++...+.+.|.+... ....++||+.++|+.|+++|++++|+||+.+..++.+++.+|+..||+ .|+++++++..||
T Consensus 198 -~l~~~~~~~y~~~~~-~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd--~Iv~sddv~~~KP 273 (381)
T PLN02575 198 -RMATRKEEIYQALQG-GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFS--VIVAAEDVYRGKP 273 (381)
T ss_pred -HHHHHHHHHHHHHhc-cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHce--EEEecCcCCCCCC
Confidence 333334444544333 336899999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCC
Q 026252 236 DPLCC 240 (241)
Q Consensus 236 ~p~~f 240 (241)
+|++|
T Consensus 274 ~Peif 278 (381)
T PLN02575 274 DPEMF 278 (381)
T ss_pred CHHHH
Confidence 99987
No 11
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.85 E-value=5.2e-20 Score=150.49 Aligned_cols=149 Identities=28% Similarity=0.409 Sum_probs=113.4
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
+++++|+||+||||+|+... +..+++.+++++|.+. ...+..... .|.+............ ..+...+.
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--ig~~~~~~~~~~~~~~-------~~~~~~~~ 70 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAED-ILRAFNAALAELGLPP-LDEEEIRQL--IGLGLDELIERLLGEA-------DEEAAAEL 70 (220)
T ss_pred CCCCEEEEeCCCccccChHH-HHHHHHHHHHHcCCCC-CCHHHHHHH--hcCCHHHHHHHHhccc-------cchhHHHH
Confidence 57899999999999999996 7789999999999884 344555554 6677666655433221 11111133
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
.+.+...+.+.+.+.. ...++||+.++|+.|+++|++++|+||..+..++.+++.+|+.++|+ .++++++....|
T Consensus 71 ~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~--~i~g~~~~~~~K 145 (220)
T COG0546 71 VERLREEFLTAYAELL---ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFD--VIVGGDDVPPPK 145 (220)
T ss_pred HHHHHHHHHHHHHhhc---cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccc--eEEcCCCCCCCC
Confidence 4444444444443322 25799999999999999999999999999999999999999999999 788878889999
Q ss_pred CCCCC
Q 026252 235 PDPLC 239 (241)
Q Consensus 235 P~p~~ 239 (241)
|+|+.
T Consensus 146 P~P~~ 150 (220)
T COG0546 146 PDPEP 150 (220)
T ss_pred cCHHH
Confidence 99975
No 12
>PRK11587 putative phosphatase; Provisional
Probab=99.84 E-value=3.2e-20 Score=151.50 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=100.6
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
|++++|||||||||+|+.+. +..+|+++++++|.+. .++... ..|.......+.+.. + ...+..
T Consensus 1 M~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~----~~~~~~-~~g~~~~~~~~~~~~-~------~~~~~~--- 64 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPA-VERAWSNWADRHGIAP----DEVLNF-IHGKQAITSLRHFMA-G------ASEAEI--- 64 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHH-HHHHHHHHHHHcCCCH----HHHHHH-HcCCCHHHHHHHHhc-c------CCcHHH---
Confidence 35899999999999999985 8889999999998752 233222 246555554444321 1 112221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
.+.+.. . ..+.... .....++||+.++|+.|+++|++++|+||+....+...++..++ .+|+ .++++++++..|
T Consensus 65 ~~~~~~-~-~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~--~i~~~~~~~~~K 138 (218)
T PRK11587 65 QAEFTR-L-EQIEATD-TEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPE--VFVTAERVKRGK 138 (218)
T ss_pred HHHHHH-H-HHHHHhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCcc--EEEEHHHhcCCC
Confidence 122211 1 1111111 23478999999999999999999999999988888888888876 5566 688888888999
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 139 P~p~~~ 144 (218)
T PRK11587 139 PEPDAY 144 (218)
T ss_pred CCcHHH
Confidence 999876
No 13
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.84 E-value=3.5e-20 Score=150.35 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=107.1
Q ss_pred EEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-hcCCCCCCCCCHHHHHHHHHHH
Q 026252 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQFIASL 158 (241)
Q Consensus 80 ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (241)
||||+||||+|+.+. +..+|+.+++++|... .+.+.+... .|.+.......+. ..+. ....+.. +++
T Consensus 1 viFD~DGTL~Ds~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~~~----~~~ 68 (213)
T TIGR01449 1 VLFDLDGTLVDSAPD-IAAAVNMALAALGLPP-ATLARVIGF--IGNGVPVLMERVLAWAGQ----EPDAQRV----AEL 68 (213)
T ss_pred CeecCCCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hcccHHHHHHHHhhcccc----ccChHHH----HHH
Confidence 689999999999985 7779999999988753 344555443 4555544444332 2221 1122222 333
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCC
Q 026252 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
...+.+.|.+.... ...++||+.++|+.|+++|++++|+||+....++..++++|+..+|+ .++++++++..||+|+
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~Kp~p~ 145 (213)
T TIGR01449 69 RKLFDRHYEEVAGE-LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFS--VLIGGDSLAQRKPHPD 145 (213)
T ss_pred HHHHHHHHHHhccc-cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCc--EEEecCCCCCCCCChH
Confidence 33344444443322 36899999999999999999999999999999999999999999998 7899999999999998
Q ss_pred CC
Q 026252 239 CC 240 (241)
Q Consensus 239 ~f 240 (241)
+|
T Consensus 146 ~~ 147 (213)
T TIGR01449 146 PL 147 (213)
T ss_pred HH
Confidence 76
No 14
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.84 E-value=4.1e-20 Score=146.67 Aligned_cols=147 Identities=25% Similarity=0.298 Sum_probs=106.4
Q ss_pred CcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-hcCCCCCCCCCHHHHHHHH
Q 026252 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQFI 155 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (241)
+++|+||+||||+|+.+. +..+|+++++++|.+. +. .+... ..|.........+. ..+. ....+..+++
T Consensus 1 ~~~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~--~~-~~~~~-~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~- 70 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPL-HAQAWKHLADKYGIEF--DK-QYNTS-LGGLSREDILRAILKLRKP----GLSLETIHQL- 70 (185)
T ss_pred CCeEEEcCCCcccCChHH-HHHHHHHHHHHcCCCC--CH-HHHHH-cCCCCHHHHHHHHHHhcCC----CCCHHHHHHH-
Confidence 589999999999999985 8889999999998763 32 22222 24555555444333 2211 1233333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCC
Q 026252 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (241)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP 235 (241)
...+.+.|.+..+.....++||+.++|+.|+++|++++++||+ ..++.+++.+++..+|+ .++++++++..||
T Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~--~v~~~~~~~~~kp 143 (185)
T TIGR02009 71 ---AERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFD--AIVDADEVKEGKP 143 (185)
T ss_pred ---HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCC--EeeehhhCCCCCC
Confidence 3333344444443344789999999999999999999999998 66889999999999998 7999999999999
Q ss_pred CCCCC
Q 026252 236 DPLCC 240 (241)
Q Consensus 236 ~p~~f 240 (241)
+|++|
T Consensus 144 ~~~~~ 148 (185)
T TIGR02009 144 HPETF 148 (185)
T ss_pred ChHHH
Confidence 99876
No 15
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.84 E-value=6.1e-20 Score=150.18 Aligned_cols=149 Identities=20% Similarity=0.343 Sum_probs=107.5
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHh-cCCCCCCCCCHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNK-TGWPEKAPSDEEERKQ 153 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (241)
.++++|+||+||||+|+.+. +..++.++++++|..... .+.+... .|.........+.. .+|. ....++
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~------~~~~~~ 74 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPL-WDRAELDVMASLGVDISR-REELPDT--LGLRIDQVVDLWYARQPWN------GPSRQE 74 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHH-HHHHHHHHHHHCCCCCCH-HHHHHHh--hCCCHHHHHHHHHHhcCCC------CCCHHH
Confidence 46899999999999999985 778999999999876432 1333332 45555444443322 2221 111122
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCC
Q 026252 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~ 233 (241)
..+.+.+. +.+... ....++||+.++|+.|+++|++++|+||+....++.+++.+++.++|+ .++++++++..
T Consensus 75 ~~~~~~~~----~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~ 147 (222)
T PRK10826 75 VVQRIIAR----VISLIE-ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFD--ALASAEKLPYS 147 (222)
T ss_pred HHHHHHHH----HHHHHh-cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhccc--EEEEcccCCCC
Confidence 22222222 222222 236899999999999999999999999999999999999999999999 78999999999
Q ss_pred CCCCCCC
Q 026252 234 KPDPLCC 240 (241)
Q Consensus 234 KP~p~~f 240 (241)
||+|++|
T Consensus 148 Kp~~~~~ 154 (222)
T PRK10826 148 KPHPEVY 154 (222)
T ss_pred CCCHHHH
Confidence 9999876
No 16
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.82 E-value=1.2e-19 Score=144.51 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=103.8
Q ss_pred CCCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHh-cCCCCCCCCCHHHHH
Q 026252 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNK-TGWPEKAPSDEEERK 152 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (241)
|.++++||||+||||+|+.+. +..+|+++++++|... +.+..... .|.........+.. .+. ....+
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~~--~~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~--- 69 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPT-HRKAWREVLGRYGLQF--DEQAMVAL--NGSPTWRIAQAIIELNQA----DLDPH--- 69 (188)
T ss_pred CCcceEEEEcCCCcCccCHHH-HHHHHHHHHHHcCCCC--CHHHHHHh--cCCCHHHHHHHHHHHhCC----CCCHH---
Confidence 356899999999999999995 8889999999998753 33444332 55555444343322 221 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCC
Q 026252 153 QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR 232 (241)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~ 232 (241)
++.. .+.+++..... ....++|| .++|+.|+++ ++++|+||+.+..++..++.+++.+||+ .|+++++++.
T Consensus 70 ~~~~----~~~~~~~~~~~-~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd--~i~~~~~~~~ 140 (188)
T PRK10725 70 ALAR----EKTEAVKSMLL-DSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFD--AVVAADDVQH 140 (188)
T ss_pred HHHH----HHHHHHHHHHh-ccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHce--EEEehhhccC
Confidence 1111 12222322222 23577887 5999999875 8999999999999999999999999999 8999999999
Q ss_pred CCCCCCCC
Q 026252 233 KKPDPLCC 240 (241)
Q Consensus 233 ~KP~p~~f 240 (241)
.||+|++|
T Consensus 141 ~KP~p~~~ 148 (188)
T PRK10725 141 HKPAPDTF 148 (188)
T ss_pred CCCChHHH
Confidence 99999886
No 17
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.82 E-value=2.9e-19 Score=141.78 Aligned_cols=145 Identities=23% Similarity=0.372 Sum_probs=103.9
Q ss_pred EEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHH-HHhcCCCCCCCCCHHHHHHHHHH
Q 026252 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQFIAS 157 (241)
Q Consensus 79 ~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (241)
+||||+||||+|+.+. +..+|+++++++|++. ..+..... .+.+....... +...++ +..++..+++.+.
T Consensus 1 ~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~--~~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 71 (185)
T TIGR01990 1 AVIFDLDGVITDTAEY-HYLAWKALADELGIPF--DEEFNESL--KGVSREDSLERILDLGGK----KYSEEEKEELAER 71 (185)
T ss_pred CeEEcCCCccccChHH-HHHHHHHHHHHcCCCC--CHHHHHHh--cCCChHHHHHHHHHhcCC----CCCHHHHHHHHHH
Confidence 5899999999999995 8889999999998863 33433333 45555554443 333333 2233444444443
Q ss_pred HHHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCC
Q 026252 158 LHKRKTELFMVLIEK-KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPD 236 (241)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~ 236 (241)
+.. .|.+.... ....++||+.++|+.|+++|++++|+||+.. ....++++++..+|+ .++++++++..||+
T Consensus 72 ~~~----~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~ 143 (185)
T TIGR01990 72 KND----YYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFD--AIVDPAEIKKGKPD 143 (185)
T ss_pred HHH----HHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCc--EEEehhhcCCCCCC
Confidence 333 33333222 2247899999999999999999999999753 467899999999999 78999999999999
Q ss_pred CCCC
Q 026252 237 PLCC 240 (241)
Q Consensus 237 p~~f 240 (241)
|++|
T Consensus 144 p~~~ 147 (185)
T TIGR01990 144 PEIF 147 (185)
T ss_pred hHHH
Confidence 9876
No 18
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.81 E-value=3e-19 Score=145.74 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
..++||+.++|+.|+++|++++|+||+....+...++.+|+..+|+ .++++++++..||+|++|
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~~~ 156 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFD--AVITSEEEGVEKPHPKIF 156 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhcc--EEEEeccCCCCCCCHHHH
Confidence 6899999999999999999999999999899999999999999998 799999999999999876
No 19
>PLN02940 riboflavin kinase
Probab=99.81 E-value=3.3e-19 Score=156.69 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=107.8
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHH-HHhcCCCCCCCCCHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQ 153 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 153 (241)
..+++||||+||||+|+... +..+|+.+++++|.. ++.+.+... .|......... +...+.+ .. .++
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~-~~~a~~~~~~~~G~~--~~~~~~~~~--~G~~~~~~~~~~~~~~~~~----~~---~~~ 76 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGI-VSDVLKAFLVKYGKQ--WDGREAQKI--VGKTPLEAAATVVEDYGLP----CS---TDE 76 (382)
T ss_pred ccCCEEEECCcCcCCcCHHH-HHHHHHHHHHHcCCC--CCHHHHHHh--cCCCHHHHHHHHHHHhCCC----CC---HHH
Confidence 45899999999999999995 888999999999865 334444443 56555554433 3333321 11 222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH-HhcCCCCcccceEEecCCCCC
Q 026252 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS-FLLGPERAEKIQIFAGDVVPR 232 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~-~l~~~~~f~~~~iv~s~~~~~ 232 (241)
+...+.+ .+.+.+. ...++||+.++|+.|+++|++++|+||+.+..+...++ .+++.++|+ .++++++++.
T Consensus 77 ~~~~~~~----~~~~~~~--~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd--~ii~~d~v~~ 148 (382)
T PLN02940 77 FNSEITP----LLSEQWC--NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFS--VIVGGDEVEK 148 (382)
T ss_pred HHHHHHH----HHHHHHc--cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCC--EEEehhhcCC
Confidence 2222222 2222222 26899999999999999999999999999999998887 678889999 8999999999
Q ss_pred CCCCCCCC
Q 026252 233 KKPDPLCC 240 (241)
Q Consensus 233 ~KP~p~~f 240 (241)
.||+|++|
T Consensus 149 ~KP~p~~~ 156 (382)
T PLN02940 149 GKPSPDIF 156 (382)
T ss_pred CCCCHHHH
Confidence 99999886
No 20
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.80 E-value=8.5e-19 Score=147.70 Aligned_cols=153 Identities=24% Similarity=0.326 Sum_probs=108.2
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
.++|+|||||||||+|+.+. +..+++++++++|.... ..+.+... .+.+...+...+....+. .....+...+++
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~~-~~~~~~~~--~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 85 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPD-LAAAVDRMLLELGRPPA-GLEAVRHW--VGNGAPVLVRRALAGSID-HDGVDDELAEQA 85 (272)
T ss_pred ccCCEEEEcCCCccccCHHH-HHHHHHHHHHHcCCCCC-CHHHHHHH--hChhHHHHHHHHhccccc-ccCCCHHHHHHH
Confidence 46899999999999999996 88899999999998643 23433332 555554443332211010 011122333333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
.+.+ .+.|.... ....++||+.++|+.|+++|++++|+||+....++.+++.+++..+|+ .++++++++..|
T Consensus 86 ~~~~----~~~~~~~~--~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~--~i~~~d~~~~~K 157 (272)
T PRK13223 86 LALF----MEAYADSH--ELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFR--WIIGGDTLPQKK 157 (272)
T ss_pred HHHH----HHHHHhcC--cCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCe--EEEecCCCCCCC
Confidence 3332 33332211 225789999999999999999999999999999999999999989998 789999999999
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 158 p~p~~~ 163 (272)
T PRK13223 158 PDPAAL 163 (272)
T ss_pred CCcHHH
Confidence 999875
No 21
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.80 E-value=5e-19 Score=144.58 Aligned_cols=146 Identities=20% Similarity=0.232 Sum_probs=103.4
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-hcCCCCCCCCCHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQ 153 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (241)
+++++|+||+||||+|+.+. +..+|.+++.++|.... .+++... ..+.....+...+. ..+.+ ... ++
T Consensus 2 ~~~~~viFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~--~~~~~~~-~~g~~~~~~~~~~~~~~~~~----~~~---~~ 70 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVI-CSRAYVTMFAEFGITLS--LEEVFKR-FKGVKLYEIIDIISKEHGVT----LAK---AE 70 (221)
T ss_pred CCCCEEEECCCCCCCCChHH-HHHHHHHHHHHcCCCCC--HHHHHHH-hcCCCHHHHHHHHHHHhCCC----CCH---HH
Confidence 46899999999999999985 77899999999987643 3333322 24555555544433 33322 112 22
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCC
Q 026252 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~ 233 (241)
+...+.....+.+ .....++||+.++|+.| +++++|+||+....+...++.+++.++|+. .++++++++..
T Consensus 71 ~~~~~~~~~~~~~-----~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~-~v~~~~~~~~~ 141 (221)
T PRK10563 71 LEPVYRAEVARLF-----DSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPD-KLFSGYDIQRW 141 (221)
T ss_pred HHHHHHHHHHHHH-----HccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcc-eEeeHHhcCCC
Confidence 2222222222211 12378999999999999 489999999999999999999999999963 57788888999
Q ss_pred CCCCCCC
Q 026252 234 KPDPLCC 240 (241)
Q Consensus 234 KP~p~~f 240 (241)
||+|++|
T Consensus 142 KP~p~~~ 148 (221)
T PRK10563 142 KPDPALM 148 (221)
T ss_pred CCChHHH
Confidence 9999987
No 22
>PRK09449 dUMP phosphatase; Provisional
Probab=99.80 E-value=1.2e-18 Score=142.63 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=97.4
Q ss_pred CCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHH----
Q 026252 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEER---- 151 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (241)
++|+|+||+||||+|+. ...+++++++.+|... ..+.+..+...+. . ....+.... ....+.
T Consensus 2 ~~k~iiFDlDGTLid~~---~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~--~-~~~~~~~~~------~~~~~~~~~~ 67 (224)
T PRK09449 2 KYDWILFDADETLFHFD---AFAGLQRMFSRYGVDF--TAEDFQDYQAVNK--P-LWVDYQNGA------ITALQLQHTR 67 (224)
T ss_pred CccEEEEcCCCchhcch---hhHHHHHHHHHhCCCC--cHHHHHHHHHHHH--H-HHHHHHcCC------CCHHHHHHHH
Confidence 58999999999999854 3457889999888764 2333333211111 1 111111110 111111
Q ss_pred -HHHHHHH---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEec
Q 026252 152 -KQFIASL---HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG 227 (241)
Q Consensus 152 -~~~~~~~---~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s 227 (241)
+++.+.+ ...+.+.|...+... ..++||+.++|+.|+ +|++++|+||+....++..++.+|+.++|+ .++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~~ 143 (224)
T PRK09449 68 FESWAEKLNVTPGELNSAFLNAMAEI-CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFD--LLVIS 143 (224)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhc-CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcC--EEEEE
Confidence 1111110 112223333333332 679999999999999 579999999999999999999999999999 89999
Q ss_pred CCCCCCCCCCCCC
Q 026252 228 DVVPRKKPDPLCC 240 (241)
Q Consensus 228 ~~~~~~KP~p~~f 240 (241)
++++..||+|++|
T Consensus 144 ~~~~~~KP~p~~~ 156 (224)
T PRK09449 144 EQVGVAKPDVAIF 156 (224)
T ss_pred CccCCCCCCHHHH
Confidence 9999999999887
No 23
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.80 E-value=9.6e-19 Score=157.63 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=105.4
Q ss_pred CCCCcEEEEecCcccccCccchHHHHHHHHHHhhcCC----CCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHH
Q 026252 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELG----VTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEE 149 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (241)
++|+++|||||||||+|+.+. +..+|++++++++.. .....+.+... .|.........+... ...+
T Consensus 238 ~~m~k~vIFDlDGTLiDs~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~~~~~l~~~-------~~~~ 307 (459)
T PRK06698 238 NEMLQALIFDMDGTLFQTDKI-LELSLDDTFDHLRSLQLWDTVTPIDKYREI--MGVPLPKVWEALLPD-------HSLE 307 (459)
T ss_pred HHhhhheeEccCCceecchhH-HHHHHHHHHHHHhhhcccCCCCCHHHHHHH--cCCChHHHHHHHhhh-------cchh
Confidence 456899999999999999996 888999999987421 11123444443 566655554443211 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCC
Q 026252 150 ERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229 (241)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~ 229 (241)
.. ++....+.+.+.+.......+++||+.++|+.|+++|++++|+||+.+..++..++.+++.++|+ .++++++
T Consensus 308 ~~----~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~--~i~~~d~ 381 (459)
T PRK06698 308 IR----EQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVT--ETFSIEQ 381 (459)
T ss_pred HH----HHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcc--eeEecCC
Confidence 11 22222233333333333447899999999999999999999999999999999999999999999 7899988
Q ss_pred CCCCCCCCCCC
Q 026252 230 VPRKKPDPLCC 240 (241)
Q Consensus 230 ~~~~KP~p~~f 240 (241)
+. .||+|++|
T Consensus 382 v~-~~~kP~~~ 391 (459)
T PRK06698 382 IN-SLNKSDLV 391 (459)
T ss_pred CC-CCCCcHHH
Confidence 64 46666654
No 24
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.80 E-value=6.6e-19 Score=142.00 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=96.4
Q ss_pred cEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHH----HHHH------------hCCchHHH-----HHHHH
Q 026252 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYG----ELLK------------IGGGKERM-----TAYFN 136 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~----~~~~------------~~~~~~~~-----~~~~~ 136 (241)
|+|+||+||||+|+... +..+++++++++|.+... +++. ..+. .+.....+ ...+.
T Consensus 1 k~viFDlDGTL~d~~~~-~~~a~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 77 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP-VGEVYCEIARKYGVEVSP--DELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFG 77 (203)
T ss_pred CeEEEecCCceeeeCCC-HHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999986 778999999999887532 2211 1110 02222111 11122
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
..+. ...+...+..+ +++..+.......++||+.++|+.|+++|++++|+||+... +...++.+|+.
T Consensus 78 ~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~ 144 (203)
T TIGR02252 78 RAGV-----PDPESFEKIFE-------ELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL 144 (203)
T ss_pred hcCC-----CCchhHHHHHH-------HHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH
Confidence 1111 01111111111 12211111223578999999999999999999999999865 57888999999
Q ss_pred CCcccceEEecCCCCCCCCCCCCC
Q 026252 217 ERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 217 ~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
.+|+ .++++++++..||+|++|
T Consensus 145 ~~fd--~i~~s~~~~~~KP~~~~~ 166 (203)
T TIGR02252 145 EYFD--FVVTSYEVGAEKPDPKIF 166 (203)
T ss_pred Hhcc--eEEeecccCCCCCCHHHH
Confidence 9999 899999999999999876
No 25
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.79 E-value=3.1e-18 Score=140.08 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=109.8
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHH-HhcCCCCCCCCCHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYF-NKTGWPEKAPSDEEERKQ 153 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (241)
+++++|+||+||||+|+... +..+|..+++++|.... +.+.+... .+.+...+.... ...+ .....+..++
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~--~g~~~~~~~~~~~~~~~----~~~~~~~~~~ 75 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPD-LAAAVNAALAALGLPPA-GEERVRTW--VGNGADVLVERALTWAG----REPDEELLEK 75 (226)
T ss_pred CcCcEEEEcCCcccccCHHH-HHHHHHHHHHHCCCCCC-CHHHHHHH--hCccHHHHHHHHHhhcc----CCccHHHHHH
Confidence 56899999999999999885 77899999999887643 34444443 555554443332 2211 1123333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCC
Q 026252 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~ 233 (241)
... .+.+.|..... ....++||+.++|+.|+++|++++++||+....++.+++.+++..+|+ .++++++++..
T Consensus 76 ~~~----~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~ 148 (226)
T PRK13222 76 LRE----LFDRHYAENVA-GGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFS--VVIGGDSLPNK 148 (226)
T ss_pred HHH----HHHHHHHHhcc-ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCcc--EEEcCCCCCCC
Confidence 333 33334443322 236899999999999999999999999999999999999999988998 78999998999
Q ss_pred CCCCCCC
Q 026252 234 KPDPLCC 240 (241)
Q Consensus 234 KP~p~~f 240 (241)
||+|++|
T Consensus 149 kp~~~~~ 155 (226)
T PRK13222 149 KPDPAPL 155 (226)
T ss_pred CcChHHH
Confidence 9999865
No 26
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.78 E-value=1.2e-18 Score=139.98 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=61.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
..++||+.++|+.|+++|++++|+||++...+...++.+|+..+|+ .++++++++..||+|++|
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd--~i~~s~~~~~~KP~~~~~ 154 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFD--AVLSADAVRAYKPAPQVY 154 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhh--eeEehhhcCCCCCCHHHH
Confidence 6899999999999999999999999999999999999999989999 899999999999999887
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.77 E-value=3e-18 Score=138.44 Aligned_cols=136 Identities=24% Similarity=0.346 Sum_probs=99.7
Q ss_pred EEEecCcccccCccchHHHHHHHHHHhh-cCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 026252 80 LLFDCDGVLVDTEKDGHRISFNDTFKEK-ELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASL 158 (241)
Q Consensus 80 ViFD~DGTLvd~~~~~~~~a~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (241)
|||||||||+|+.+. +..+|+++++++ |.+. ...+.+... .|.......+. .+.+ ....++ +
T Consensus 1 iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~---~~~~------~~~~~~----~ 63 (205)
T TIGR01454 1 VVFDLDGVLVDSFAV-MREAFAIAYREVVGDGP-APFEEYRRH--LGRYFPDIMRI---MGLP------LEMEEP----F 63 (205)
T ss_pred CeecCcCccccCHHH-HHHHHHHHHHHhcCCCC-CCHHHHHHH--hCccHHHHHHH---cCCC------HHHHHH----H
Confidence 689999999999995 888999999884 6542 344555543 45555444332 2221 111111 1
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCC
Q 026252 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
.. +.+ . . ....+++||+.++|++|+++|++++|+||+....+...++.+|+.++|+ .++++++.+..||+|+
T Consensus 64 ~~---~~~-~-~-~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~ 135 (205)
T TIGR01454 64 VR---ESY-R-L-AGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFD--HVIGSDEVPRPKPAPD 135 (205)
T ss_pred HH---HHH-H-h-hcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhhee--eEEecCcCCCCCCChH
Confidence 11 111 1 1 1237899999999999999999999999999999999999999999998 7899999899999998
Q ss_pred CC
Q 026252 239 CC 240 (241)
Q Consensus 239 ~f 240 (241)
+|
T Consensus 136 ~~ 137 (205)
T TIGR01454 136 IV 137 (205)
T ss_pred HH
Confidence 76
No 28
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.77 E-value=5.8e-18 Score=138.20 Aligned_cols=148 Identities=16% Similarity=0.251 Sum_probs=99.4
Q ss_pred CcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHH-----H
Q 026252 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEE-----R 151 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 151 (241)
+|+|+||+||||+|+.+. +..++.++++++|+... ......+... .. .....+. .+. ..... .
T Consensus 1 ~k~viFD~DGTL~d~~~~-~~~~~~~~~~~~g~~~~--~~~~~~~~~~--~~-~~~~~~~-~~~-----~~~~~~~~~~~ 68 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA-EALALRLLFEDQGIPLT--EDMFAQYKEI--NQ-GLWRAYE-EGK-----ITKDEVVNTRF 68 (224)
T ss_pred CCEEEEcCcCcccccchH-HHHHHHHHHHHhCCCcc--HHHHHHHHHH--hH-HHHHHHH-cCC-----CCHHHHHHHHH
Confidence 589999999999999995 77789999999887643 2222221111 11 1111111 110 11111 0
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEe
Q 026252 152 KQFIASLH-----KRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (241)
Q Consensus 152 ~~~~~~~~-----~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~ 226 (241)
..+...+. +.+.+.|...... ..+++||+.++|+.|+++ ++++|+||+....+...++.+++..+|+ .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd--~i~~ 144 (224)
T TIGR02254 69 SALLKEYNTEADEALLNQKYLRFLEE-GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFD--DIFV 144 (224)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhc-cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcC--EEEE
Confidence 00111000 1223333333322 368999999999999999 9999999999999999999999999999 8999
Q ss_pred cCCCCCCCCCCCCC
Q 026252 227 GDVVPRKKPDPLCC 240 (241)
Q Consensus 227 s~~~~~~KP~p~~f 240 (241)
+++++..||+|++|
T Consensus 145 ~~~~~~~KP~~~~~ 158 (224)
T TIGR02254 145 SEDAGIQKPDKEIF 158 (224)
T ss_pred cCccCCCCCCHHHH
Confidence 99999999999886
No 29
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.77 E-value=5.2e-18 Score=136.29 Aligned_cols=156 Identities=15% Similarity=0.038 Sum_probs=99.3
Q ss_pred cEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCch-------HHHHHHHHhcCCCCCCCCCHHH
Q 026252 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK-------ERMTAYFNKTGWPEKAPSDEEE 150 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 150 (241)
++|||||||||+|+.+. +..+|+++++++|.. ....+.+..+...+... ..+..++....... ......
T Consensus 1 ~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 76 (197)
T TIGR01548 1 QALVLDMDGVMADVSQS-YRRAIIDTVEHFGGV-SVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSER--VRDAPT 76 (197)
T ss_pred CceEEecCceEEechHH-HHHHHHHHHHHHcCC-CCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchh--ccCCcc
Confidence 47999999999999995 888999999999753 33445555552222211 12223222110000 001112
Q ss_pred HHHHHHHHHHHHHHH--HHHHH--HhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEe
Q 026252 151 RKQFIASLHKRKTEL--FMVLI--EKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (241)
Q Consensus 151 ~~~~~~~~~~~~~~~--~~~~~--~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~ 226 (241)
.+++.+.+.+.+.+. +.... ......+.+++.++|+.|+++|++++|+||+.+..++.+++.+|+..+|+ .+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~--~~~~ 154 (197)
T TIGR01548 77 LEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFP--VQIW 154 (197)
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCC--EEEe
Confidence 222222222221110 00000 00012455677999999999999999999999999999999999999998 7899
Q ss_pred cCCCCCCCCCCCCC
Q 026252 227 GDVVPRKKPDPLCC 240 (241)
Q Consensus 227 s~~~~~~KP~p~~f 240 (241)
++++.. ||+|++|
T Consensus 155 ~~~~~~-KP~p~~~ 167 (197)
T TIGR01548 155 MEDCPP-KPNPEPL 167 (197)
T ss_pred ecCCCC-CcCHHHH
Confidence 999877 9999875
No 30
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.76 E-value=2.7e-18 Score=140.67 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=60.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
..++||+.++|+.|+++|++++|+||+....+...++.+|+.++|+ .++++++++..||+|++|
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~iv~s~~~~~~KP~p~~~ 155 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLD--LLLSTHTFGYPKEDQRLW 155 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCC--EEEEeeeCCCCCCCHHHH
Confidence 7899999999999999999999999999999999999999999999 899999999999999887
No 31
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.75 E-value=2.7e-17 Score=138.37 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=99.6
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
..+++|||||||||+|+.+. +..+|+++++++|... ...+.+..+ .+.....+.+. .++ ..+..+++
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~~-~~~~~~~~~--~g~~~~~i~~~---~~~------~~~~~~~~ 126 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPT-VVAIANAHAPDFGYDP-IDERDYAQL--RQWSSRTIVRR---AGL------SPWQQARL 126 (273)
T ss_pred hhcCEEEECCcCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hCccHHHHHHH---cCC------CHHHHHHH
Confidence 35899999999999999986 7789999999998863 344555544 44444443332 221 22233333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCC
Q 026252 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (241)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~K 234 (241)
.+.+. +.+.... ...+++||+.++|+.|+++|++++|+||+....+..+++.+|+.++|+ .+++++++ ..|
T Consensus 127 ~~~~~----~~~~~~~--~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~--~vi~~~~~-~~k 197 (273)
T PRK13225 127 LQRVQ----RQLGDCL--PALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFS--VVQAGTPI-LSK 197 (273)
T ss_pred HHHHH----HHHHhhc--ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheE--EEEecCCC-CCC
Confidence 33333 2333322 236899999999999999999999999999999999999999999998 67777664 345
Q ss_pred C
Q 026252 235 P 235 (241)
Q Consensus 235 P 235 (241)
|
T Consensus 198 ~ 198 (273)
T PRK13225 198 R 198 (273)
T ss_pred H
Confidence 4
No 32
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.74 E-value=9.7e-18 Score=136.03 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=89.6
Q ss_pred CcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 026252 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIA 156 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (241)
+|+||||+||||+|+.. ...+|...+...|.. ..+.... ..+.......+.+. .+. .+.+ ++.+
T Consensus 2 ik~viFDldGtL~d~~~--~~~~~~~~~~~~g~~---~~~~~~~--~~~~~~~~~~~~~~-~g~-----~~~~---~~~~ 65 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG--VMRRWETERGLPGLK---DFIVTVN--ITGPDFNPWARTFE-RGE-----LTAE---AFDG 65 (211)
T ss_pred ceEEEEecCCceecCHH--HHHHHHHHcCCCCCc---cHHHHHH--hcCCCCChHHHHHH-cCC-----CCHH---HHHH
Confidence 68999999999999865 444666665555543 1222222 24444444333222 110 1111 1222
Q ss_pred HHHHHH----------HHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHH--HHHHHHHhcCCCCcccceE
Q 026252 157 SLHKRK----------TELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKA--VTAIVSFLLGPERAEKIQI 224 (241)
Q Consensus 157 ~~~~~~----------~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~--~~~~l~~l~~~~~f~~~~i 224 (241)
.+.+.. .+.+ ..+......++||+.++|+.|+++|++++|+||+.... ....+...++.++|+ .+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd--~v 142 (211)
T TIGR02247 66 LFRHEYGLRLGHDVRIAPVF-PLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFD--AV 142 (211)
T ss_pred HHHHHhccccCCCcCchhhH-HHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCC--EE
Confidence 222111 1122 22222347899999999999999999999999986443 223334456778998 88
Q ss_pred EecCCCCCCCCCCCCC
Q 026252 225 FAGDVVPRKKPDPLCC 240 (241)
Q Consensus 225 v~s~~~~~~KP~p~~f 240 (241)
+++++++..||+|++|
T Consensus 143 ~~s~~~~~~KP~p~~~ 158 (211)
T TIGR02247 143 VESCLEGLRKPDPRIY 158 (211)
T ss_pred EEeeecCCCCCCHHHH
Confidence 9999999999999887
No 33
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.74 E-value=2e-17 Score=133.70 Aligned_cols=149 Identities=26% Similarity=0.313 Sum_probs=113.8
Q ss_pred CCCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHH
Q 026252 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQ 153 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
+..+.+++||+||||+|++.. +..+|+..+.++|...++ +.... ..|....++.+.+.... ......++
T Consensus 7 ~~~~~~~lfD~dG~lvdte~~-y~~~~~~~~~~ygk~~~~--~~~~~--~mG~~~~eaa~~~~~~~------~dp~s~ee 75 (222)
T KOG2914|consen 7 SLKVSACLFDMDGTLVDTEDL-YTEAWQELLDRYGKPYPW--DVKVK--SMGKRTSEAARLFVKKL------PDPVSREE 75 (222)
T ss_pred ccceeeEEEecCCcEEecHHH-HHHHHHHHHHHcCCCChH--HHHHH--HcCCCHHHHHHHHHhhc------CCCCCHHH
Confidence 356899999999999999996 888999999999985554 33332 37777777777665221 12223455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhc-CCCCcccceEEe--cCCC
Q 026252 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL-GPERAEKIQIFA--GDVV 230 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~-~~~~f~~~~iv~--s~~~ 230 (241)
+..+..+...+.+.. ..+.||+.++++.|+.+|++++++|+.++...+..+++++ +...|+ .++. +.++
T Consensus 76 ~~~e~~~~~~~~~~~------~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~--~~v~~d~~~v 147 (222)
T KOG2914|consen 76 FNKEEEEILDRLFMN------SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFS--HVVLGDDPEV 147 (222)
T ss_pred HHHHHHHHHHHhccc------cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcC--CCeecCCccc
Confidence 555555555555533 6889999999999999999999999999999999999886 556677 4555 6678
Q ss_pred CCCCCCCCCCC
Q 026252 231 PRKKPDPLCCG 241 (241)
Q Consensus 231 ~~~KP~p~~f~ 241 (241)
..+||+|++|.
T Consensus 148 ~~gKP~Pdi~l 158 (222)
T KOG2914|consen 148 KNGKPDPDIYL 158 (222)
T ss_pred cCCCCCchHHH
Confidence 99999999983
No 34
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.73 E-value=8.7e-18 Score=131.14 Aligned_cols=137 Identities=25% Similarity=0.353 Sum_probs=96.7
Q ss_pred EEEecCcccccCccchHHHHHHHH-HHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-hcCCCCCCCCCHHHHHHHHHH
Q 026252 80 LLFDCDGVLVDTEKDGHRISFNDT-FKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQFIAS 157 (241)
Q Consensus 80 ViFD~DGTLvd~~~~~~~~a~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (241)
|+||+||||+|+... +..++... ++.++.+ .+.+.++.. .+.........+. ..+ ..
T Consensus 1 iifD~dgtL~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~------- 59 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPA-IFRALQRLALEEFGLE--ISAEELREL--FGKSYEEALERLLERFG---------ID------- 59 (176)
T ss_dssp EEEESBTTTEEHHHH-HHHHHHHHHHHHTTHH--HHHHHHHHH--TTSHHHHHHHHHHHHHH---------HH-------
T ss_pred cEEECCCCcEeCHHH-HHHHHHHHHHHHhCCC--CCHHHHHHH--hCCCHHHHHHHhhhccc---------hh-------
Confidence 799999999999984 77788874 6666554 222333332 3333333332222 110 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCC
Q 026252 158 LHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237 (241)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p 237 (241)
.....+.+.+.......+++||+.++|+.|+++|++++++||+....+...++++|+.++|+ .++++++.+..||+|
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~~~~Kp~~ 136 (176)
T PF13419_consen 60 -PEEIQELFREYNLESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDVGSRKPDP 136 (176)
T ss_dssp -HHHHHHHHHHHHHHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGSSSSTTSH
T ss_pred -HHHHHHHhhhhhhhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccc--cccccchhhhhhhHH
Confidence 11222233332222347999999999999999999999999999999999999999999999 899999999999999
Q ss_pred CCC
Q 026252 238 LCC 240 (241)
Q Consensus 238 ~~f 240 (241)
++|
T Consensus 137 ~~~ 139 (176)
T PF13419_consen 137 DAY 139 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 35
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.73 E-value=4.1e-17 Score=159.07 Aligned_cols=150 Identities=27% Similarity=0.295 Sum_probs=108.4
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHh-cCCCCCCCCCHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNK-TGWPEKAPSDEEERKQ 153 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (241)
.++++|||||||||+|+.+. +..+|+++++++|.+. +.+.+... .+.....+...+.. .+.+ .... ++
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~i--t~e~~~~~--~G~~~~~~~~~~~~~~~l~---~~~~---~~ 141 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVEV--TVEDFVPF--MGTGEANFLGGVASVKGVK---GFDP---DA 141 (1057)
T ss_pred CCCCEEEECCCCCeEeChHH-HHHHHHHHHHHcCCCC--CHHHHHHH--hCCCHHHHHHHHHHhcCCC---CCCH---HH
Confidence 46899999999999999995 8889999999998763 44555444 56665555443322 2221 1111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC-CCcccceEEecCCCCC
Q 026252 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP-ERAEKIQIFAGDVVPR 232 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~-~~f~~~~iv~s~~~~~ 232 (241)
..+.+.+.+.+.|.. .....++||+.++|+.|+++|++++|+||.....++..++.+++. .+|+ .++++++++.
T Consensus 142 ~~~~~~~~~~~~~~~---~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd--~iv~~~~~~~ 216 (1057)
T PLN02919 142 AKKRFFEIYLEKYAK---PNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD--AIVSADAFEN 216 (1057)
T ss_pred HHHHHHHHHHHHhhh---cccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC--EEEECccccc
Confidence 222222222222211 112357999999999999999999999999999999999999885 7898 8999999999
Q ss_pred CCCCCCCC
Q 026252 233 KKPDPLCC 240 (241)
Q Consensus 233 ~KP~p~~f 240 (241)
.||+|++|
T Consensus 217 ~KP~Pe~~ 224 (1057)
T PLN02919 217 LKPAPDIF 224 (1057)
T ss_pred CCCCHHHH
Confidence 99999987
No 36
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.72 E-value=7.3e-17 Score=133.44 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=88.9
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCC----CCCHHHHHHHHH---hCC----------chHHHHHHHHh
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGV----TWDVDLYGELLK---IGG----------GKERMTAYFNK 137 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~----~~~~~~~~~~~~---~~~----------~~~~~~~~~~~ 137 (241)
.++|+|+||+||||+|+.+. +..+++++++.++... .+....+..+.. ... ....+...+..
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPV-ILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCceeEEEcCcccccCChHH-HHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 35799999999999999985 7778888776653211 122222221111 000 00111222222
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
.+.+ .+..+... +...+.+.. +.. ...++||+.++|+.|+++ ++++++||++.. ++.+|+..
T Consensus 87 ~g~~------~~~~~~~~----~~~~~~~~~-~~~-~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~ 148 (238)
T PRK10748 87 AGLS------AEEASAGA----DAAMINFAK-WRS-RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGD 148 (238)
T ss_pred cCCC------HHHHHHHH----HHHHHHHHH-Hhh-cCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHH
Confidence 2211 11111111 111122221 111 268999999999999875 999999998754 37788889
Q ss_pred CcccceEEecCCCCCCCCCCCCC
Q 026252 218 RAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 218 ~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
+|+ .++++++++..||+|++|
T Consensus 149 ~fd--~i~~~~~~~~~KP~p~~~ 169 (238)
T PRK10748 149 YFE--FVLRAGPHGRSKPFSDMY 169 (238)
T ss_pred hhc--eeEecccCCcCCCcHHHH
Confidence 999 789999999999999987
No 37
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.70 E-value=1.1e-16 Score=123.42 Aligned_cols=124 Identities=24% Similarity=0.331 Sum_probs=89.1
Q ss_pred EEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 026252 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASL 158 (241)
Q Consensus 79 ~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (241)
+|+||+||||+|+.+. +..+|+++++++|. +.+.+... .|.....+..... ..+++.
T Consensus 1 ~iifD~DGTL~d~~~~-~~~~~~~~~~~~~~----~~~~~~~~--~g~~~~~~~~~~~-------------~~~~~~--- 57 (154)
T TIGR01549 1 AILFDIDGTLVDSSFA-IRRAFEETLEEFGE----DFQALKAL--RGLAEELLYRIAT-------------SFEELL--- 57 (154)
T ss_pred CeEecCCCcccccHHH-HHHHHHHHHHHhcc----cHHHHHHH--HccChHHHHHHHH-------------HHHHHh---
Confidence 4899999999999885 78899999999874 22333222 2222222211110 111111
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCC
Q 026252 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
. | .. ....+||+.++|+.|+++|++++|+||+.+..+...++.+ +..+|+ .++++++++ .||+|+
T Consensus 58 -----~-~----~~-~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~--~i~~~~~~~-~Kp~~~ 122 (154)
T TIGR01549 58 -----G-Y----DA-EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFD--LILGSDEFG-AKPEPE 122 (154)
T ss_pred -----C-c----ch-hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCc--EEEecCCCC-CCcCHH
Confidence 1 1 11 2467799999999999999999999999999999999987 778888 788898888 999998
Q ss_pred CC
Q 026252 239 CC 240 (241)
Q Consensus 239 ~f 240 (241)
+|
T Consensus 123 ~~ 124 (154)
T TIGR01549 123 IF 124 (154)
T ss_pred HH
Confidence 76
No 38
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=129.93 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
.+++|++.+.|+.|+++ ++++++||+....+...++.+|+.++|| .+++|+++|..||+|++|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd--~v~~s~~~g~~KP~~~~f 160 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFD--AVFISEDVGVAKPDPEIF 160 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhh--eEEEecccccCCCCcHHH
Confidence 78999999999999999 9999999999899999999999999999 899999999999999988
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.68 E-value=8.4e-17 Score=127.82 Aligned_cols=136 Identities=13% Similarity=0.169 Sum_probs=87.7
Q ss_pred cEEEEecCcccccCccchHHHHHHHHHH-----hhcCCCCCCHHHHHHH-H-HhCCchHHHHHHHHhcCCCCCCCCCHHH
Q 026252 78 SALLFDCDGVLVDTEKDGHRISFNDTFK-----EKELGVTWDVDLYGEL-L-KIGGGKERMTAYFNKTGWPEKAPSDEEE 150 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~~~~~a~~~~~~-----~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (241)
++||||+||||+|+... +..++++.+. ++|+... +...+... + ..|.....+. ... ....
T Consensus 1 ~~viFDlDGTL~ds~~~-~~~~~~~~~~~~~~~~~g~~~~-~~~~l~~~~~~~~g~~~~~~~---~~~------~~~~-- 67 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAG-IFLQIDRNITEFVAARLKLSEE-EARVLRKDYYREYGTTLAGLM---ILH------EIDA-- 67 (184)
T ss_pred CeEEEeCCCCCCCCccc-HHHHHHHHHHHHHHHHcCcCHH-HHHHHHHHHHHHHchHHHHHH---Hhh------CCCH--
Confidence 47999999999999885 6667877654 3444321 11111111 0 1222222221 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCC
Q 026252 151 RKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230 (241)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~ 230 (241)
+++.+.+.+ .......+++||+.++|+.|+ ++++|+||+.+..+...++.+|+.++|+ .+++++++
T Consensus 68 -~~~~~~~~~--------~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd--~i~~~~~~ 133 (184)
T TIGR01993 68 -DEYLRYVHG--------RLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFD--GIFCFDTA 133 (184)
T ss_pred -HHHHHHHhc--------cCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhC--eEEEeecc
Confidence 112222211 001112679999999999997 4799999999999999999999999999 89999998
Q ss_pred CC----CCCCCCCC
Q 026252 231 PR----KKPDPLCC 240 (241)
Q Consensus 231 ~~----~KP~p~~f 240 (241)
+. .||+|++|
T Consensus 134 ~~~~~~~KP~p~~~ 147 (184)
T TIGR01993 134 NPDYLLPKPSPQAY 147 (184)
T ss_pred cCccCCCCCCHHHH
Confidence 77 59999887
No 40
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.66 E-value=1.3e-15 Score=120.24 Aligned_cols=63 Identities=27% Similarity=0.317 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
.+++||+.++|+.|+++|++++|+||+.... ..++.++|+..+|+ .++++++++..||+|++|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~--~i~~~~~~~~~KP~~~~~ 146 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFD--VVIFSGDVGRGKPDPDIY 146 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCC--EEEEcCCCCCCCCCHHHH
Confidence 5889999999999999999999999999887 66666688999998 789999999999999876
No 41
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.64 E-value=1.2e-15 Score=122.78 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=56.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH-hcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~-l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
..++||+.++|+.|+++|++++|+||+....+...+.. .++..+|+ .++++++++..||+|++|
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd--~v~~s~~~~~~KP~p~~~ 147 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD--HIYLSQDLGMRKPEARIY 147 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC--EEEEecccCCCCCCHHHH
Confidence 46899999999999999999999999988777666554 35678898 899999999999999987
No 42
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.62 E-value=1.9e-16 Score=124.68 Aligned_cols=57 Identities=28% Similarity=0.333 Sum_probs=52.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
..++||+.++|+ +++|+||+....+...++++++..+|+ .++++++++..||+|++|
T Consensus 89 ~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~~~~~~~~KP~p~~f 145 (175)
T TIGR01493 89 LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFD--RAFSVDTVRAYKPDPVVY 145 (175)
T ss_pred CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHh--hhccHhhcCCCCCCHHHH
Confidence 679999999998 389999999999999999999999998 789999999999999987
No 43
>PLN02811 hydrolase
Probab=99.60 E-value=9.1e-15 Score=119.46 Aligned_cols=139 Identities=21% Similarity=0.298 Sum_probs=93.7
Q ss_pred cCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-hcCCCCCCCCCHHHHHHHHHHHHHHH
Q 026252 84 CDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQFIASLHKRK 162 (241)
Q Consensus 84 ~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241)
|||||+|++.. +..+|.++++++|... ..+.+..+ .|.....+...+. ..+.+. ....+. +.+. .
T Consensus 1 ~DGTL~Ds~~~-~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~----~ 66 (220)
T PLN02811 1 MDGLLLDTEKF-YTEVQEKILARYGKTF--DWSLKAKM--MGKKAIEAARIFVEESGLSD--SLSPED---FLVE----R 66 (220)
T ss_pred CCCcceecHHH-HHHHHHHHHHHcCCCC--CHHHHHHc--cCCCHHHHHHHHHHHhCCCC--CCCHHH---HHHH----H
Confidence 79999999985 8889999999999863 33444333 5666655544433 233321 011111 2221 1
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH-HHHHhcCCCCcccceEEecC--CCCCCCCCCCC
Q 026252 163 TELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA-IVSFLLGPERAEKIQIFAGD--VVPRKKPDPLC 239 (241)
Q Consensus 163 ~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~-~l~~l~~~~~f~~~~iv~s~--~~~~~KP~p~~ 239 (241)
..++..... ...++||+.++|+.|+++|++++|+||+.+..... .++..++.++|+ .+++++ +++..||+|++
T Consensus 67 ~~~~~~~~~--~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~--~i~~~~~~~~~~~KP~p~~ 142 (220)
T PLN02811 67 EAMLQDLFP--TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMH--HVVTGDDPEVKQGKPAPDI 142 (220)
T ss_pred HHHHHHHHh--hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCC--EEEECChhhccCCCCCcHH
Confidence 122222111 26889999999999999999999999998765544 333446678898 789999 88899999998
Q ss_pred C
Q 026252 240 C 240 (241)
Q Consensus 240 f 240 (241)
|
T Consensus 143 ~ 143 (220)
T PLN02811 143 F 143 (220)
T ss_pred H
Confidence 7
No 44
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=118.31 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=96.5
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
+.+|+|+||++|||+...+. ....|..+.+.+|+..+- ......+ ......+.......+.....-...+.+...
T Consensus 5 ~~iravtfD~~~tLl~~~~~-~~~~y~~i~~~~gl~~~~--~~~~~~~--~~~~~~~~~~~p~~~~~~g~l~~~~ww~~l 79 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLPP-VMEVYCEIAEAYGLEYDD--SLIETIF--RKDFKKMSEKGPFFGLYSGELTLSQWWPKL 79 (237)
T ss_pred cceEEEEEeCCCceeecCCc-cHHHHHHHHHHhCCCCCH--HHHhHhh--hHHHHhhcccCCcccccCCcccHHHHHHHH
Confidence 56899999999999996664 556899999999988432 2222211 010000000000000000000011111111
Q ss_pred HHH--------HHHHHH-----HHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCccc
Q 026252 155 IAS--------LHKRKT-----ELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK 221 (241)
Q Consensus 155 ~~~--------~~~~~~-----~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~ 221 (241)
+.. ..+... ..|.... ...+.+.+|+.++++.||++|+.++++||.+ ...+.++..+++..|||
T Consensus 80 v~~~f~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d-~r~~~~l~~~~l~~~fD- 156 (237)
T KOG3085|consen 80 VESTFGKAGIDYEEELLENFSFRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNFD-DRLRLLLLPLGLSAYFD- 156 (237)
T ss_pred HHHHhccccchhHHHHHhhhhhheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCCc-HHHHHHhhccCHHHhhh-
Confidence 110 111111 1111111 1247888999999999999999999999999 44558888899999999
Q ss_pred ceEEecCCCCCCCCCCCCC
Q 026252 222 IQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 222 ~~iv~s~~~~~~KP~p~~f 240 (241)
.++.|+++|..||+|.||
T Consensus 157 -~vv~S~e~g~~KPDp~If 174 (237)
T KOG3085|consen 157 -FVVESCEVGLEKPDPRIF 174 (237)
T ss_pred -hhhhhhhhccCCCChHHH
Confidence 899999999999999998
No 45
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.54 E-value=3.8e-14 Score=113.73 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=78.7
Q ss_pred CCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 026252 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (241)
|+|+||||+||||+|+.. ++..+++++|++. +.+... .+.......... . +...+..+++.
T Consensus 1 m~k~viFDlDGTLiD~~~-----~~~~~~~~~g~~~----~~~~~~--~g~~~~~~~~~~--~------~~~~~~~~~~~ 61 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQS-----GLPYFAQKYNIPT----DHILKM--IQDERFRDPGEL--F------GCDQELAKKLI 61 (197)
T ss_pred CCcEEEEecCCceEchhh-----ccHHHHHhcCCCH----HHHHHH--HhHhhhcCHHHH--h------cccHHHHHHHh
Confidence 479999999999999654 4677888877642 333322 222211111111 1 01222233333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCccc--ceEEecCCCCCC
Q 026252 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK--IQIFAGDVVPRK 233 (241)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~--~~iv~s~~~~~~ 233 (241)
+.+.. ..+. ....++||+.++|+.|+++ ++++++||.........++.+++..+|+. +.++++++.
T Consensus 62 ~~~~~-------~~~~-~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~--- 129 (197)
T PHA02597 62 EKYNN-------SDFI-RYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD--- 129 (197)
T ss_pred hhhhH-------HHHH-HhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC---
Confidence 33321 1111 1267999999999999987 57889999876766667777766554421 156666662
Q ss_pred CCCCCCC
Q 026252 234 KPDPLCC 240 (241)
Q Consensus 234 KP~p~~f 240 (241)
||+|++|
T Consensus 130 ~~kp~~~ 136 (197)
T PHA02597 130 ESKEKLF 136 (197)
T ss_pred cccHHHH
Confidence 5556654
No 46
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.51 E-value=1.8e-13 Score=109.79 Aligned_cols=61 Identities=21% Similarity=0.107 Sum_probs=52.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p 237 (241)
..++||+.++|+.|+++|++++|+||+....++.+++.+|+..+|. ..+..++.+..||++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~g~~~p~~ 139 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYS--NELVFDEKGFIQPDG 139 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEE--EEEEEcCCCeEecce
Confidence 6899999999999999999999999999999999999999877776 455565556666654
No 47
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.42 E-value=1.3e-12 Score=106.45 Aligned_cols=46 Identities=30% Similarity=0.268 Sum_probs=43.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
.+++||+.++|+.|+++|++++|+||+....++.+++.+++..+|.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~ 129 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFA 129 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEe
Confidence 6799999999999999999999999999999999999999888875
No 48
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.38 E-value=5.4e-12 Score=103.04 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=51.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC--CcccceEEecCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE--RAEKIQIFAGDVVPRKKPDPLC 239 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~--~f~~~~iv~s~~~~~~KP~p~~ 239 (241)
.+++||+.++|+.|+++|++++|+||+....++.+++.+ +.. .+.+...+.++.+...||+|.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~ 138 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCD 138 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCcc
Confidence 689999999999999999999999999999999999987 543 2211134566677778998875
No 49
>PLN02954 phosphoserine phosphatase
Probab=99.38 E-value=3.3e-12 Score=104.43 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCchHHHHHH-HHhcCCCCCCCCCHHHHHH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQ 153 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 153 (241)
+.+|+|+|||||||++++ .+..+++.+|....+ .+....+........+.... +... . ...+
T Consensus 10 ~~~k~viFDfDGTL~~~~------~~~~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~--~----~~~~---- 72 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDE------GIDELAEFCGAGEAV-AEWTAKAMGGSVPFEEALAARLSLF--K----PSLS---- 72 (224)
T ss_pred ccCCEEEEeCCCcccchH------HHHHHHHHcCChHHH-HHHHHHHHCCCCCHHHHHHHHHHHc--C----CCHH----
Confidence 458999999999999974 357777777764222 12222221111222222221 2111 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC--CCcc
Q 026252 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP--ERAE 220 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~--~~f~ 220 (241)
...+. ++.....++||+.++|+.|+++|++++|+||+....++.+++.+|+. .+|.
T Consensus 73 -------~~~~~----~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 73 -------QVEEF----LEKRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred -------HHHHH----HHHccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 11111 11122578999999999999999999999999999999999999886 3553
No 50
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.35 E-value=6.9e-12 Score=103.11 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC----cHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS----NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~----~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
..+++++.++|+.|+++|++++++||. ....++.+++.+|+.++|+ .++++++....||+|.
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~--~i~~~d~~~~~Kp~~~ 178 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNP--VIFAGDKPGQYQYTKT 178 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchhee--EEECCCCCCCCCCCHH
Confidence 467778999999999999999999998 6678888999999999998 7888888777788764
No 51
>PRK11590 hypothetical protein; Provisional
Probab=99.29 E-value=3.2e-11 Score=97.97 Aligned_cols=126 Identities=17% Similarity=0.078 Sum_probs=73.4
Q ss_pred CCcEEEEecCcccccCccchHHHHHHHHH-HhhcCCCCCCHHHHHHHHHhCCchHHHHHHHH-h---cCCCCCCCCCHHH
Q 026252 76 LPSALLFDCDGVLVDTEKDGHRISFNDTF-KEKELGVTWDVDLYGELLKIGGGKERMTAYFN-K---TGWPEKAPSDEEE 150 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~~~~~a~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~ 150 (241)
..|+++||+||||++.+ ...+|...+ +++|+... ..+..... .|.+......... . .-|.......+++
T Consensus 5 ~~k~~iFD~DGTL~~~d---~~~~~~~~~~~~~g~~~~-~~~~~~~~--ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD---MFGSFLRYLLRRQPLNLL-LVLPLLPV--IGLGLLVKGRAARWPMSLLLWGCTFGHSEAR 78 (211)
T ss_pred cceEEEEecCCCCcccc---hHHHHHHHHHHhcchhhH-HHhHHHHH--hccCcccchhhhhhhHHHHHHHHHcCCCHHH
Confidence 34799999999999444 334666666 77775532 22333332 3333322111100 0 0000000123333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 151 RKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLI-DQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL-~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+++.+.+. +.|.. . ..++||+.++| +.|+++|++++|+||+....++.+++.+++.
T Consensus 79 ~~~~~~~f~----~~~~~----~-~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~ 136 (211)
T PRK11590 79 LQALEADFV----RWFRD----N-VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWL 136 (211)
T ss_pred HHHHHHHHH----HHHHH----h-CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcccc
Confidence 333333332 22322 1 46799999999 5788899999999999999999999998753
No 52
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.25 E-value=7.8e-11 Score=93.35 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=47.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
.+++||+.++|+.|+++|++++|+||+....++..++.+++.++|+ .+++++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~i~~~~ 122 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFI--EIYSNP 122 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhhee--EEeccC
Confidence 6899999999999999999999999999999999999999999998 677654
No 53
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.23 E-value=1.4e-10 Score=93.47 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=42.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCccc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK 221 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~ 221 (241)
.+++||+.++|+.|+++ ++++|+||+....++..++.+|+..+|..
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~ 112 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCH 112 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcc
Confidence 68899999999999999 99999999999999999999998888863
No 54
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.19 E-value=1.1e-10 Score=97.47 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLC 239 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~ 239 (241)
||+.|+|++|+++|++++|+||+.+..+...++.+|+..+|+ .|++++++...||+|+.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFd--vIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFD--IIISGGHKAEEYSTMST 207 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccC--EEEECCccccCCCCccc
Confidence 899999999999999999999999999999999999999998 89999999999999963
No 55
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.19 E-value=2.3e-10 Score=91.99 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=42.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
..++||+.++|+.++++|++++|+|++....++.+++.+|+..+|.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~ 131 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIG 131 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEe
Confidence 4689999999999999999999999999999999999998887775
No 56
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.17 E-value=1.4e-10 Score=94.60 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=50.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh---cCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l---~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
.+++||+.++|++|+++|++++|+||++...+..+++.. ++.++|+ .++. ..++ .||+|++|
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~--~~fd-~~~g-~KP~p~~y 158 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS--GYFD-TTVG-LKTEAQSY 158 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc--eEEE-eCcc-cCCCHHHH
Confidence 579999999999999999999999999999888888875 4566776 4443 3333 79999887
No 57
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.16 E-value=5e-10 Score=91.08 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=52.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc-cceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE-KIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~-~~~iv~s~~~~~~KP~p~~f 240 (241)
.+++||+.++|+.|+++|++++|+|++....++.+++.++...++. .+.++.++.+...||+|..|
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~ 135 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDG 135 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCcc
Confidence 6899999999999999999999999999999999999875444442 12455556667788988765
No 58
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.11 E-value=1.1e-11 Score=97.15 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=56.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC-cHHHHHHHHHHhcCC---------CCcccceEEecCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGP---------ERAEKIQIFAGDVVPRKKPDPLC 239 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~-~~~~~~~~l~~l~~~---------~~f~~~~iv~s~~~~~~KP~p~~ 239 (241)
.+++||+.++|+.|+++|++++|+||+ ....++..++.+++. ++|+ .++++++....||.|++
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd--~iv~~~~~~~~kp~~~i 116 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFD--DRIEIYKPNKAKQLEMI 116 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhce--eeeeccCCchHHHHHHH
Confidence 689999999999999999999999998 888899999999988 8998 78998887777777654
No 59
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.08 E-value=9.9e-11 Score=89.68 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=48.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcH---------------HHHHHHHHHhcCCCCcccceE-EecCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQI-FAGDVVPRKKPDPL 238 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~---------------~~~~~~l~~l~~~~~f~~~~i-v~s~~~~~~KP~p~ 238 (241)
++++||+.++|+.|+++|++++|+||..+ ..+...++.+++...+....+ ..+++.+..||+|+
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 46789999999999999999999999873 466777888876521110011 12455677899998
Q ss_pred CC
Q 026252 239 CC 240 (241)
Q Consensus 239 ~f 240 (241)
+|
T Consensus 106 ~~ 107 (147)
T TIGR01656 106 LI 107 (147)
T ss_pred HH
Confidence 76
No 60
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.07 E-value=6e-10 Score=95.84 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=40.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
.+++||+.++|+.|++.|++++|+|++.....+.+++.+++...+
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~ 224 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAV 224 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEE
Confidence 689999999999999999999999999988889999988776543
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.07 E-value=5.6e-10 Score=87.22 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=49.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHH------------HHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK------------AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~------------~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
++||+.++|+.|+++|++++|+||+... .+..+++.+|+. + + .++++++...+||+|++|
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~-~--~ii~~~~~~~~KP~p~~~ 114 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP-I-Q--VLAATHAGLYRKPMTGMW 114 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC-E-E--EEEecCCCCCCCCccHHH
Confidence 7899999999999999999999998753 467888988874 3 3 466666666789999875
No 62
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.03 E-value=4.5e-10 Score=88.99 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=47.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcH---------------HHHHHHHHHhcCCCCcccceEEec-----CCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIFAG-----DVVPRKK 234 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~---------------~~~~~~l~~l~~~~~f~~~~iv~s-----~~~~~~K 234 (241)
+.++||+.++|++|+++|++++|+||+.. ..+...++.+|+ +|+ .++.+ ++.+..|
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~--~i~~~~~~~~~~~~~~K 103 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLD--GIYYCPHHPEDGCDCRK 103 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccc--eEEECCCCCCCCCcCCC
Confidence 46889999999999999999999999863 334455666654 355 45543 4567899
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 104 P~p~~~ 109 (181)
T PRK08942 104 PKPGML 109 (181)
T ss_pred CCHHHH
Confidence 999876
No 63
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.03 E-value=4.1e-10 Score=83.71 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=49.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~ 233 (241)
..++||+.++|+.|+++|++++++||+....+...++.+++..+++ .+++++.....
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~ 79 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFD--PVITSNGAAIY 79 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhh--heeccchhhhh
Confidence 6899999999999999999999999999999999999998877777 67777664444
No 64
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.02 E-value=3.2e-09 Score=86.16 Aligned_cols=46 Identities=26% Similarity=0.212 Sum_probs=43.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
..++||+.++++.|+++|++++|+|++....++.+.+.+|+...+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~a 121 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVA 121 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchhee
Confidence 6899999999999999999999999999999999999999887776
No 65
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.94 E-value=6.5e-09 Score=83.87 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=42.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCccc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK 221 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~ 221 (241)
.+++||+.++|+.|+++| +++|+||+....+..+++.+|+..+|..
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an 112 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCH 112 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhce
Confidence 689999999999999975 9999999999999999999998877763
No 66
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.93 E-value=6.8e-09 Score=84.23 Aligned_cols=43 Identities=14% Similarity=-0.052 Sum_probs=37.3
Q ss_pred CCCChhHHHHHH-HHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 175 LPLRPGVAKLID-QALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 175 ~~l~pgv~elL~-~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
..++||+.++|+ .|+++|++++|+||+....++.+.+..++..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~ 136 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIH 136 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccc
Confidence 368999999996 7888999999999999999999998765544
No 67
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.92 E-value=1e-08 Score=83.97 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=46.5
Q ss_pred CCCChhHHHHHHHH--HHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEec
Q 026252 175 LPLRPGVAKLIDQA--LEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG 227 (241)
Q Consensus 175 ~~l~pgv~elL~~L--k~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s 227 (241)
+++.||+.++++.+ ++.|+.+.|+|+++..+++.+|+..|+...|+ .|++-
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~--~I~TN 122 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFS--EIFTN 122 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccc--eEEeC
Confidence 89999999999999 45799999999999999999999999999987 66664
No 68
>PRK08238 hypothetical protein; Validated
Probab=98.89 E-value=3.8e-08 Score=88.96 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=52.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
.+++||+.++|++++++|++++++||+.+..++.+++++|+ |+ .++++++....||++.
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd--~Vigsd~~~~~kg~~K 129 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FD--GVFASDGTTNLKGAAK 129 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CC--EEEeCCCccccCCchH
Confidence 67889999999999999999999999999999999999876 77 7999988777777653
No 69
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.89 E-value=5e-08 Score=76.54 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=42.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
..++||+.++|+.|+++|++++|+|++....++.+++.+|+..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~ 117 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFA 117 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchhee
Confidence 6789999999999999999999999999999999999998877665
No 70
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.80 E-value=2.6e-08 Score=83.49 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~ 230 (241)
||+.++|++|+++|++++|+||+.++.+...++.+|+..+|+ .++++++.
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFD--vII~~g~i 200 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFD--IIICGGRK 200 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcccc--EEEECCCc
Confidence 888999999999999999999999999999999999999998 77777763
No 71
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.79 E-value=3.1e-08 Score=81.48 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC----cHHHHHHHHHHhcC--CCCcccceEEecCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS----NEKAVTAIVSFLLG--PERAEKIQIFAGDVVPRKKPDP 237 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~----~~~~~~~~l~~l~~--~~~f~~~~iv~s~~~~~~KP~p 237 (241)
..++||+.++|+.|+++|++++++||. .....+.+++.+|+ .++|+ .++++++. .||++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~--vil~gd~~--~K~~K 177 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP--VIFAGDKP--GQYTK 177 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee--EEEcCCCC--CCCCH
Confidence 678999999999999999999999995 45577777777888 67887 67777653 66665
No 72
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.77 E-value=2.8e-08 Score=78.98 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=85.5
Q ss_pred CCCcEEEEecCcccccCccchHHHHHH----HH-HHhhcCCCCCCHHHHHHHHH-hCCchHHHHHHHHhcCCCCCCCCCH
Q 026252 75 VLPSALLFDCDGVLVDTEKDGHRISFN----DT-FKEKELGVTWDVDLYGELLK-IGGGKERMTAYFNKTGWPEKAPSDE 148 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~~~~~~a~~----~~-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (241)
..+++++||+|+||+..... ...+.+ +. ..++|.+.+-.......+++ .|.... . +...+. ...
T Consensus 13 ~~~~~l~FDiDdtLYp~St~-i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~a---G-L~~~~~----~~d- 82 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTG-IQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMA---G-LKAVGY----IFD- 82 (244)
T ss_pred ccceEEEEecccccccCchh-HHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHH---H-HHHhcc----cCC-
Confidence 46899999999999998764 444444 32 33466654322222222211 111111 1 111111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 149 EERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
.+++..-.+.+. .+ ..+.+.+...++|-.|++++ ..+.||+.+.++..+|+.+|+.+.|+ .|++-+
T Consensus 83 --~deY~~~V~~~L--Pl------q~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFe--gii~~e 148 (244)
T KOG3109|consen 83 --ADEYHRFVHGRL--PL------QDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFE--GIICFE 148 (244)
T ss_pred --HHHHHHHhhccC--cH------hhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhcc--ceeEee
Confidence 122222111110 01 11688899999999999874 78999999999999999999999999 666654
Q ss_pred CCC------CCCCCCCCC
Q 026252 229 VVP------RKKPDPLCC 240 (241)
Q Consensus 229 ~~~------~~KP~p~~f 240 (241)
-.. -.||.+..|
T Consensus 149 ~~np~~~~~vcKP~~~af 166 (244)
T KOG3109|consen 149 TLNPIEKTVVCKPSEEAF 166 (244)
T ss_pred ccCCCCCceeecCCHHHH
Confidence 322 358988766
No 73
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.66 E-value=4.7e-08 Score=78.77 Aligned_cols=57 Identities=35% Similarity=0.510 Sum_probs=46.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
.+++||+.++|+.|+++|++++++||.+...+..+.+.+|+.+ .++.++.. .||+|.
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~-----~~v~a~~~--~kP~~k 182 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD-----SIVFARVI--GKPEPK 182 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS-----EEEEESHE--TTTHHH
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc-----cccccccc--ccccch
Confidence 3789999999999999999999999999999999999998733 23333322 777765
No 74
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.62 E-value=1.1e-07 Score=86.45 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcH------------HHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNE------------KAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~------------~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
++|||.+.|+.|+++|++++|+||... ..+..+++.+|+. |+ .+++.++...+||+|.++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fd--viia~~~~~~RKP~pGm~ 269 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQ--VFIAIGAGFYRKPLTGMW 269 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eE--EEEeCCCCCCCCCCHHHH
Confidence 689999999999999999999999865 4577888888764 66 677777778899999875
No 75
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.60 E-value=6.2e-08 Score=75.28 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=51.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC---------------cHHHHHHHHHHhcCCCCcccceEE-e----cCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS---------------NEKAVTAIVSFLLGPERAEKIQIF-A----GDVVPRKK 234 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~---------------~~~~~~~~l~~l~~~~~f~~~~iv-~----s~~~~~~K 234 (241)
++++||+.++|++|+++|++++|+||. ....+..+++.+|+. |+ .++ + +++.+..|
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd--~ii~~~~~~~~~~~~~K 103 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FD--DVLICPHFPDDNCDCRK 103 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--ee--EEEECCCCCCCCCCCCC
Confidence 578999999999999999999999997 355778888888875 65 344 4 57888999
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 104 P~~~~~ 109 (161)
T TIGR01261 104 PKIKLL 109 (161)
T ss_pred CCHHHH
Confidence 999875
No 76
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.57 E-value=1.8e-06 Score=72.48 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=54.9
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceE------EecCCCCCCCCCCC
Q 026252 168 VLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQI------FAGDVVPRKKPDPL 238 (241)
Q Consensus 168 ~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~i------v~s~~~~~~KP~p~ 238 (241)
+...+..+.+.||+.++++.|+++|++++|+|++....++..++.+|+.+.+. .+ +..+.+-.+||.|-
T Consensus 113 ~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~--~IvSN~L~f~~dGvltG~~~P~ 187 (277)
T TIGR01544 113 EIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNV--KVVSNFMDFDEDGVLKGFKGPL 187 (277)
T ss_pred HHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCc--eEEeeeEEECCCCeEeCCCCCc
Confidence 33443458999999999999999999999999999999999999998765554 44 54555555688773
No 77
>PRK06769 hypothetical protein; Validated
Probab=98.55 E-value=6e-08 Score=76.30 Aligned_cols=64 Identities=11% Similarity=-0.042 Sum_probs=46.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHH--------HHHHHHHHhcCCCCcccceE-EecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK--------AVTAIVSFLLGPERAEKIQI-FAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~--------~~~~~l~~l~~~~~f~~~~i-v~s~~~~~~KP~p~~f 240 (241)
..++||+.++|++|+++|++++|+||+... .....++.+|+..+|. .+ .++++++..||+|++|
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~KP~p~~~ 99 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYL--CPHKHGDGCECRKPSTGML 99 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEE--CcCCCCCCCCCCCCCHHHH
Confidence 568999999999999999999999998742 1333355555444432 12 2466678899999886
No 78
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.52 E-value=7.4e-07 Score=74.54 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=44.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHHhcCCCCcccceEEecCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~---~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP 235 (241)
..++||+.++|+.|+++|++++++||.. +......|+.+|+...+.. .++..++ ...||
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d-~lllr~~-~~~K~ 178 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEE-HLLLKKD-KSSKE 178 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcc-eEEeCCC-CCCcH
Confidence 6789999999999999999999999986 4445577888877654432 5665543 34454
No 79
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.51 E-value=1.9e-07 Score=81.08 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=48.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC---------------cHHHHHHHHHHhcCCCCcccceEE-e----cCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS---------------NEKAVTAIVSFLLGPERAEKIQIF-A----GDVVPRKK 234 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~---------------~~~~~~~~l~~l~~~~~f~~~~iv-~----s~~~~~~K 234 (241)
..++||+.++|++|+++|++++|+||. .......+++.+++. |+ .++ + +++.+.+|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd--~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FD--EVLICPHFPEDNCSCRK 104 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--ee--eEEEeCCcCcccCCCCC
Confidence 478999999999999999999999995 245566777877663 55 444 3 35667899
Q ss_pred CCCCCC
Q 026252 235 PDPLCC 240 (241)
Q Consensus 235 P~p~~f 240 (241)
|+|++|
T Consensus 105 P~p~~l 110 (354)
T PRK05446 105 PKTGLV 110 (354)
T ss_pred CCHHHH
Confidence 999765
No 80
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.51 E-value=1.8e-06 Score=74.68 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=47.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh-c-------CCCCcccceEEecCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL-L-------GPERAEKIQIFAGDV 229 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l-~-------~~~~f~~~~iv~s~~ 229 (241)
+...||+.++|++|+++|++++|+||+....++.+++.+ | +.++|| .|+++..
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD--~IIt~a~ 243 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD--VVIVDAR 243 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc--EEEeCCC
Confidence 577999999999999999999999999999999999997 6 789998 6777653
No 81
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.48 E-value=6.2e-07 Score=71.49 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=45.9
Q ss_pred CCCChhHHHHHHHHHHCCC-eEEEEeCCcHHHHHHHHHHhcCCCCcccceEEe
Q 026252 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi-~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~ 226 (241)
+++.||+.++|+.+++.|- -+.|+|+.+..+++.+|+++++.+.|. .|++
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~--~IfT 133 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFS--EIFT 133 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHH--HHhc
Confidence 7999999999999999985 899999999999999999999998887 5655
No 82
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.47 E-value=2.2e-07 Score=73.23 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=46.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcH---------------HHHHHHHHHhcCCCCcccceEEec-----------C
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIFAG-----------D 228 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~---------------~~~~~~l~~l~~~~~f~~~~iv~s-----------~ 228 (241)
+.++||+.++|++|+++|++++|+||+.. ..+...+..+++. |+ .++.+ +
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LD--GIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--cc--EEEECCCCCcccccccC
Confidence 57899999999999999999999999984 3344555555443 54 34432 3
Q ss_pred CCCCCCCCCCCC
Q 026252 229 VVPRKKPDPLCC 240 (241)
Q Consensus 229 ~~~~~KP~p~~f 240 (241)
+...+||+|++|
T Consensus 101 ~~~~~KP~p~~~ 112 (176)
T TIGR00213 101 VCDCRKPKPGML 112 (176)
T ss_pred CCCCCCCCHHHH
Confidence 456789999886
No 83
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.1e-06 Score=65.05 Aligned_cols=52 Identities=19% Similarity=0.356 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEe
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~ 226 (241)
+.+.||.+|+++..+++++++.|+|++....+..+++.+++.+..+.+.+++
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~s 123 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVS 123 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEee
Confidence 6889999999999999999999999999999999999997766655433333
No 84
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.44 E-value=5.6e-06 Score=64.86 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=40.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
.+++-||+.|+...|+++|..++++|++-+..+..+-..+|+.-
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 48999999999999999999999999999999999999997764
No 85
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.44 E-value=4.2e-07 Score=68.04 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=49.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc--------HHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN--------EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~--------~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
..++||+.++|+.|+++|++++++||+. ...+...++.+++. ++ .++.+. +..||+|++|
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~--~~~KP~~~~~ 91 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--ID--VLYACP--HCRKPKPGMF 91 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EE--EEEECC--CCCCCChHHH
Confidence 4688999999999999999999999998 88899999998775 33 233333 5789999876
No 86
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.41 E-value=2.5e-07 Score=79.81 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=47.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH----hcCCCCcccceEEecCCCCCCCCCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF----LLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~----l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
.+++|+.++|+.|+++|++++|+||++...+...++. ++..++|+ .+.++ .||+|+
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~--~~~~~-----~~pk~~ 90 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFD--ARSIN-----WGPKSE 90 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHee--EEEEe-----cCchHH
Confidence 3579999999999999999999999999999999999 88888887 45443 356654
No 87
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.38 E-value=1.6e-07 Score=70.16 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCC-cHHHHHHHHHHhc-------CCCCcccceEEecCCCCCCCCCCCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLL-------GPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~-~~~~~~~~l~~l~-------~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
.++||+.++|+.|+++|++++++||+ ....+...++.++ +.++|+ .++++++ ||+|++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~--~~~~~~~----~pkp~~~ 95 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFD--PLTIGYW----LPKSPRL 95 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhh--hhhhcCC----CcHHHHH
Confidence 36799999999999999999999999 8888888889887 678888 6777754 4666544
No 88
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.35 E-value=1e-06 Score=67.46 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=52.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCC-cccceEEecCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER-AEKIQIFAGDVVPRKKPD 236 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~-f~~~~iv~s~~~~~~KP~ 236 (241)
..++||+.|+|+.|+ ++++++|+||+.+..++.+++.+++..+ |+ .+++++++...||+
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~--~i~~~~d~~~~KP~ 103 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGY--RRLFRDECVFVKGK 103 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEee--eEEECccccccCCe
Confidence 578999999999998 5799999999999999999999987554 46 78999999999986
No 89
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.26 E-value=7.6e-06 Score=64.80 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
|++.++|+.++++|++++|+|++....++.+++.+|+..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 555599999999999999999999999999999887654
No 90
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.21 E-value=9.4e-07 Score=68.90 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=32.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeC-CcHHHHHHHHHHhcCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCST-SNEKAVTAIVSFLLGP 216 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn-~~~~~~~~~l~~l~~~ 216 (241)
+.+||+|.++|+.|+++|+++++.|- ...+.++.+|+.+++.
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 78999999999999999999999994 5667999999999988
No 91
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.06 E-value=4.1e-06 Score=71.45 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=56.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC-CcccceEEecC-------CCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGD-------VVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~-~f~~~~iv~s~-------~~~~~KP~p~~f 240 (241)
..++||+.++|+.|+++|++++++||......+..++.+++.+ +|+ .+++.+ +.+..||+|+++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~--~i~~~~~~~~~~~~~~~~kp~p~~~ 257 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD--DLIGRPPDMHFQREQGDKRPDDVVK 257 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchh--hhhCCcchhhhcccCCCCCCcHHHH
Confidence 5789999999999999999999999999999999999999886 888 677777 456789998764
No 92
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.02 E-value=2e-06 Score=72.74 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=39.9
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHHHHH-HHHHHhcCCCCcccceEE---ecCCCCCCCCCCCCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVT-AIVSFLLGPERAEKIQIF---AGDVVPRKKPDPLCC 240 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~-~~l~~l~~~~~f~~~~iv---~s~~~~~~KP~p~~f 240 (241)
-|+|+.++++.|+++|+ ++|+||.+..... ..+...+...+|+ .+. ..+....+||+|.+|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~--~i~~~~g~~~~~~gKP~p~~~ 208 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVA--AIETASGRQPLVVGKPSPYMF 208 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHH--HHHHHhCCceeccCCCCHHHH
Confidence 48899999999998887 7899998754321 1122333334454 232 234456789999876
No 93
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.00 E-value=1.8e-05 Score=60.71 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
|.+.+.++.++++|+++.|+||+.+..+....+.+|+.
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc
Confidence 44557777899999999999999999999999988653
No 94
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.93 E-value=1.3e-06 Score=73.11 Aligned_cols=62 Identities=6% Similarity=-0.158 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCC---CCCCCCCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR---KKPDPLCC 240 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~---~KP~p~~f 240 (241)
.|+++.+.++.|++.+++++++||.+.......+..+|...+|+ .+..+..... .||+|++|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~--~i~~~~~~~~~~~gKP~p~~~ 185 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVT--ALEYATDTKATVVGKPSKTFF 185 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHH--HHHHHhCCCceeecCCCHHHH
Confidence 47899999999999999999999998776666666666667776 4554444333 79999876
No 95
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.86 E-value=2.4e-05 Score=61.35 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc-HHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN-EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~-~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
..++||+.++|+.|+++|++++++||+. ...+..+++.+++.. + .+..||+|++|
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-------~----~~~~KP~p~~~ 97 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV-------L----PHAVKPPGCAF 97 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE-------E----cCCCCCChHHH
Confidence 4788999999999999999999999998 566777766664321 1 13469999876
No 96
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.86 E-value=5.6e-05 Score=63.73 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
+++.++|++|+++|++++++||.....+...++.+++..++
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPF 64 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCE
Confidence 34557888999999999999999999999999999876554
No 97
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.86 E-value=2.4e-05 Score=64.81 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=46.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH--HHHHHhcCCC-CcccceEEecCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT--AIVSFLLGPE-RAEKIQIFAGDV 229 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~--~~l~~l~~~~-~f~~~~iv~s~~ 229 (241)
..++||+.|+|++|+++|++++++||+.+.... ..++.+|+.. +|+ .|+++.+
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~--~Ii~s~~ 78 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPE--MIISSGE 78 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccc--eEEccHH
Confidence 468999999999999999999999999877666 7889999887 888 7888774
No 98
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.76 E-value=0.0001 Score=60.29 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 182 ~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+.|++|+++|++++++|+.+...+..+++.+++.
T Consensus 26 ~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 26 VEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred HHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 35556666777777777777766666666666543
No 99
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.74 E-value=0.00021 Score=58.38 Aligned_cols=44 Identities=20% Similarity=0.093 Sum_probs=37.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHH---HHHHHHHhcCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPER 218 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~---~~~~l~~l~~~~~ 218 (241)
.+..||+.++++.|+++|++|.++||-.... ....|...|...+
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~ 165 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW 165 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence 6889999999999999999999999998655 6667777776544
No 100
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.67 E-value=0.00024 Score=59.56 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 182 ~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+.|++|+++|++++++|+.....+..+++.+++.
T Consensus 26 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 26 KQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 36677889999999999999988888888888764
No 101
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.58 E-value=0.00028 Score=59.14 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.5
Q ss_pred CCcEEEEecCcccccCcc
Q 026252 76 LPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~ 93 (241)
++|+|+||+||||++...
T Consensus 2 ~~kli~~DlDGTLl~~~~ 19 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKK 19 (272)
T ss_pred CccEEEEeCCCceECCCC
Confidence 479999999999997654
No 102
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.58 E-value=0.00016 Score=51.58 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=37.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHHhcCCCCcccceEEecC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~---~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
-.++||+.|+|++|+++|.++.++||+. +......|+.+|+.--.+ .|+++-
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~--~i~ts~ 67 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDED--EIITSG 67 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GG--GEEEHH
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcC--EEEChH
Confidence 3678999999999999999999999994 345555667777663333 677764
No 103
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.57 E-value=0.00029 Score=57.14 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
|+..+.|++|+++|++++++|+.....+..+++.++..
T Consensus 21 ~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 44457778888889999999999888888888877654
No 104
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.56 E-value=0.00029 Score=59.24 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.1
Q ss_pred CCcEEEEecCcccccCcc
Q 026252 76 LPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~ 93 (241)
|+|+|+||+||||++.+.
T Consensus 1 m~kli~~DlDGTLl~~~~ 18 (272)
T PRK15126 1 MARLAAFDMDGTLLMPDH 18 (272)
T ss_pred CccEEEEeCCCcCcCCCC
Confidence 379999999999997554
No 105
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.56 E-value=0.00014 Score=62.83 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEecCcccccCccchHHHHHHHHHHhhc
Q 026252 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKE 108 (241)
Q Consensus 79 ~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g 108 (241)
+|+||+||||+++... + ..+.++++.++
T Consensus 2 ~~ifD~DGvL~~g~~~-i-~ga~eal~~L~ 29 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKP-I-AGASDALRRLN 29 (321)
T ss_pred EEEEeCcCceECCccc-c-HHHHHHHHHHh
Confidence 6899999999999985 4 35566655543
No 106
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.54 E-value=7.3e-05 Score=59.66 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=20.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
+++.||+.|+|++|.++|..+.++|...
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 6899999999999999997777777664
No 107
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.51 E-value=0.00031 Score=57.77 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHHhcCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPER 218 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~---~~~~~~~l~~l~~~~~ 218 (241)
.+..||+.++++.++++|++|..+||-. +.....-|+..|...+
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~ 160 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGW 160 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTB
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCcc
Confidence 4788999999999999999999999984 4456666777775543
No 108
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.50 E-value=0.00035 Score=58.41 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
+.|++++++|++++++|+.....+..+++.++...
T Consensus 27 ~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 27 EALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred HHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 56667778888888888888788888888776654
No 109
>PRK10976 putative hydrolase; Provisional
Probab=97.47 E-value=0.00041 Score=58.04 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.9
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
+|+|++|+||||++...
T Consensus 2 ikli~~DlDGTLl~~~~ 18 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH 18 (266)
T ss_pred ceEEEEeCCCCCcCCCC
Confidence 79999999999997654
No 110
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.33 E-value=0.0012 Score=55.19 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=34.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHH---HHHHHHHHhcCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFLLGPER 218 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~---~~~~~l~~l~~~~~ 218 (241)
.+..||++++.+.|+++|++|.++||-... ....-|+..|...+
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~ 190 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW 190 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc
Confidence 688999999999999999999999999753 34455555565443
No 111
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=97.29 E-value=0.00082 Score=52.39 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=34.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
.++||++.+.|++-++.|++++|-|.++...+..+..+
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fgh 139 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGH 139 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcc
Confidence 68999999999999999999999999998888777664
No 112
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.28 E-value=0.0011 Score=56.00 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=33.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
+.+.|++|+++|++++++|+.....+..+.+.+++..+|
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~ 61 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPF 61 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeE
Confidence 346778999999999999999999999999999876544
No 113
>PTZ00445 p36-lilke protein; Provisional
Probab=97.22 E-value=0.0015 Score=52.52 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=42.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHH---------------HHHHHHHHhcCCCCcccceEEecC-----------C
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEK---------------AVTAIVSFLLGPERAEKIQIFAGD-----------V 229 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~---------------~~~~~l~~l~~~~~f~~~~iv~s~-----------~ 229 (241)
.+.|+..+++.+|++.|++++|||=++.. .++..|+.-+..-... .+++-. .
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~--~~~~yyp~~w~~p~~y~~ 152 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIK--KVYAYYPKFWQEPSDYRP 152 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceee--eeeeeCCcccCChhhhhh
Confidence 45688889999999999999999998764 4666676442221111 233211 1
Q ss_pred CCCCCCCCCC
Q 026252 230 VPRKKPDPLC 239 (241)
Q Consensus 230 ~~~~KP~p~~ 239 (241)
++..||+|++
T Consensus 153 ~gl~KPdp~i 162 (219)
T PTZ00445 153 LGLDAPMPLD 162 (219)
T ss_pred hcccCCCccc
Confidence 4778999998
No 114
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.18 E-value=0.0016 Score=48.27 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=24.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~ 205 (241)
.+.+++.+.|++|+++|+.++++|+.....
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 355778889999999999999999886543
No 115
>PTZ00174 phosphomannomutase; Provisional
Probab=97.11 E-value=0.0018 Score=53.80 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=16.4
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
|.+|.|+||+||||++...
T Consensus 3 ~~~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRN 21 (247)
T ss_pred CCCeEEEEECcCCCcCCCC
Confidence 5689999999999997665
No 116
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.09 E-value=0.0011 Score=51.23 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC-CCcccceEEecCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP-ERAEKIQIFAGDV 229 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~-~~f~~~~iv~s~~ 229 (241)
..++||+.++|+.|++. +.++|+|++.+..+..+++.++.. .+|.. .+++.++
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~-ri~~rd~ 110 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGD-RIISRDE 110 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeecc-EEEEecc
Confidence 67899999999999865 999999999999999999999877 47731 5666665
No 117
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.99 E-value=0.0029 Score=53.19 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+.|++|+++|++++++|+.....+..+++.+++.
T Consensus 31 ~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 31 PWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 6677888999999999999989999999988764
No 118
>PLN02887 hydrolase family protein
Probab=96.97 E-value=0.0027 Score=59.00 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 182 ~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+.|++|+++|+.++++|+.....+...++.+++.
T Consensus 331 ~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 331 AKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 36778889999999999999888888888887653
No 119
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.93 E-value=0.0043 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=17.4
Q ss_pred CCCCcEEEEecCcccccCccc
Q 026252 74 SVLPSALLFDCDGVLVDTEKD 94 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~~ 94 (241)
...+|+||||.|+||+.+...
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~ 58 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYED 58 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcC
Confidence 357999999999999876653
No 120
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=96.85 E-value=0.0027 Score=49.32 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC-CcccceEEecCCCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKP 235 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~-~f~~~~iv~s~~~~~~KP 235 (241)
...+||+.|+|+.|.+. +.++|.|++.+..++.+++.++... +|+ .+++.+.....||
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~--~~l~r~~~~~~~~ 99 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVIS--RRLYRESCVFTNG 99 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEe--EEEEccccEEeCC
Confidence 57889999999999987 9999999999999999999998665 777 6777766443343
No 121
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.84 E-value=0.00027 Score=58.78 Aligned_cols=61 Identities=13% Similarity=-0.078 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH--HH-HHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA--IV-SFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~--~l-~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
.-|+...+.+..|+ +|.+ .++||.+...... .+ ..-.+...+. ...+.+.+...||+|++|
T Consensus 121 ~~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~--~~~~~~~~~~gKP~~~~~ 184 (249)
T TIGR01457 121 IDYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLE--VATGVKPVYIGKPNAIIM 184 (249)
T ss_pred CCHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHH--HHhCCCccccCCChHHHH
Confidence 34566666677774 5777 7889986433211 00 0000111222 344555666789999876
No 122
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.82 E-value=0.00081 Score=52.61 Aligned_cols=37 Identities=19% Similarity=0.017 Sum_probs=33.1
Q ss_pred HHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 184 lL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
-|+.|+++|++++|+||.....++..++.+++..+|+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~ 78 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHE 78 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEe
Confidence 4567889999999999999999999999998887775
No 123
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.81 E-value=0.005 Score=57.73 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+.|++|+++|++++++|+.....+..+++.+++.
T Consensus 440 eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 440 DALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 5677888999999999999988888888888654
No 124
>PLN02645 phosphoglycolate phosphatase
Probab=96.69 E-value=0.00059 Score=58.68 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=31.1
Q ss_pred HHHHHHHCCCeEEEEeCCcHHH-HHHHHHHhcCCCCcccceEEecCCCC---CCCCCCCCC
Q 026252 184 LIDQALEKGVKVAVCSTSNEKA-VTAIVSFLLGPERAEKIQIFAGDVVP---RKKPDPLCC 240 (241)
Q Consensus 184 lL~~Lk~~gi~v~ivTn~~~~~-~~~~l~~l~~~~~f~~~~iv~s~~~~---~~KP~p~~f 240 (241)
....|++++-.++|+||.+... ....+...|...+|+ .+..+.... .+||+|.+|
T Consensus 178 a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~--~i~~~~~~~~~~~gKP~p~~~ 236 (311)
T PLN02645 178 ATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVG--AIKGSTEREPLVVGKPSTFMM 236 (311)
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHH--HHHHHhCCCcccCCCChHHHH
Confidence 4455544333688999988533 223333444545666 455544432 259999876
No 125
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=96.56 E-value=0.003 Score=48.09 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 185 IDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 185 L~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
|+.|.+.|++++|+|+.+...++...+.+|+..++.
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~q 79 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQ 79 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeee
Confidence 456677799999999999999999999998876654
No 126
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=96.54 E-value=0.087 Score=48.25 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH-hcCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLGP 216 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~-l~~~ 216 (241)
++|.+.+.+ +++|.. +|+|.+.+..++.+.+. +|..
T Consensus 111 l~~~a~~~~---~~~g~~-vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWRVF---NSFGKR-YIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHHHH---HhCCCE-EEEECCcHHHHHHHHHHcCCCC
Confidence 667666544 566754 99999999999999976 5544
No 127
>PLN02645 phosphoglycolate phosphatase
Probab=96.45 E-value=0.0073 Score=51.97 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHHhcCCCCcccceEEecC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~---~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
.++||+.|+|+.|+++|++++++||+. .......|+.+|+...++ .|+++.
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~--~I~ts~ 97 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEE--EIFSSS 97 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChh--hEeehH
Confidence 356999999999999999999999987 444444556777765555 677764
No 128
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.26 E-value=0.0076 Score=44.54 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=46.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEe
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~ 226 (241)
+.++|.|+++++.+|..|+-++..|=+...-+...|+.+++.+||+ .++.
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFh--y~Vi 89 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFH--YIVI 89 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEE--EEEe
Confidence 7899999999999999999999999999899999999999999998 4554
No 129
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.24 E-value=0.0077 Score=56.01 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=43.2
Q ss_pred CCCChhHHHHHHHHHHCC-CeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 175 LPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~g-i~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
-+++||+.++|++|+++| ++++++||.....++.+++.+|+.++|.
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~ 429 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHA 429 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeec
Confidence 479999999999999999 9999999999999999999999987775
No 130
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.23 E-value=0.00044 Score=57.25 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 178 ~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
++++.++++.|+++|+++ |+||.+.......+..++...+|.....++.+....+||+|++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~ 201 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIF 201 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHH
Confidence 689999999999999997 88999877776666666655566511114555556899999876
No 131
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.011 Score=49.52 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=38.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcH---HHHHHHHHHhcCC-CCcccceEEecCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---KAVTAIVSFLLGP-ERAEKIQIFAGDV 229 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~---~~~~~~l~~l~~~-~~f~~~~iv~s~~ 229 (241)
..++||+.|+|++|+++|+++.++||++. +.+...|+.+++. ...+ .|++|-+
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~--~i~TS~~ 79 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPD--DIVTSGD 79 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHH--HeecHHH
Confidence 46889999999999999999999999943 3344555553333 3444 5777654
No 132
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=96.09 E-value=0.0088 Score=55.38 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=43.1
Q ss_pred CCCChhHHHHHHHHHHCCC-eEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi-~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
-+++||+.++|++|+++|+ +++++||.....++.+++.+|+.++|.
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~ 407 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHA 407 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhh
Confidence 4789999999999999999 999999999999999999999988775
No 133
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.06 E-value=0.026 Score=46.20 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=35.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHH----HHHHHHHhcCCCCc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKA----VTAIVSFLLGPERA 219 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~----~~~~l~~l~~~~~f 219 (241)
..+.||+.|+|.+.-++|.+|.-+||...+. ...-|++.|+...-
T Consensus 121 sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~ 169 (274)
T COG2503 121 SKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVL 169 (274)
T ss_pred cccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCccccc
Confidence 5788999999999999999999999996655 34445555555433
No 134
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=95.93 E-value=0.011 Score=45.42 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 184 lL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
+|++|+++|++++|+||.....+...++.+|+..+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~ 72 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQ 72 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 7899999999999999999999999999998877665
No 135
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.93 E-value=0.01 Score=45.87 Aligned_cols=59 Identities=25% Similarity=0.456 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCC---cH-----------HHHHHHHHHhcCCCCcccceEEecCC-CCCCCCCCCCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTS---NE-----------KAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPLCC 240 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~---~~-----------~~~~~~l~~l~~~~~f~~~~iv~s~~-~~~~KP~p~~f 240 (241)
++|+|.+.|++|.+.||.++|+||- .+ ..+..+++.+++. + .++.+.. -..+||.|-|+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~---~~~~a~~~d~~RKP~~GM~ 103 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--I---QVYAAPHKDPCRKPNPGMW 103 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---E---EEEECGCSSTTSTTSSHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--e---EEEecCCCCCCCCCchhHH
Confidence 4568999999999999999999997 22 3445555555443 2 3444433 37899998653
No 136
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.76 E-value=0.024 Score=47.16 Aligned_cols=50 Identities=10% Similarity=0.254 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCC---cHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTS---NEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~---~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
+.||+.++|++|+++|++++++||+ ....+...++.+|+....+ .|+++.
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~--~iit~~ 70 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLE--TVFTAS 70 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh--hEeeHH
Confidence 4579999999999999999999995 4667777788887765444 566664
No 137
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.72 E-value=0.024 Score=47.96 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHHhcCCCCcccceEEecC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~---~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
.++||+.|+|++|+++|++++++||+. +......++.+|+....+ .++++.
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~--~i~ts~ 71 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAE--QLFSSA 71 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh--hEecHH
Confidence 356999999999999999999999974 334445667777654444 577654
No 138
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.56 E-value=0.03 Score=46.80 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHH---HHHHHHHHhcCCCCcccceEEecC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~---~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
+.||+.+.|++|+++|++++++||+... .....++.+|+.--.+ .|+++.
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~--~i~ts~ 74 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISED--EVFTPA 74 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHH--HeEcHH
Confidence 6799999999999999999999998444 4666677776542222 566653
No 139
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=95.47 E-value=0.036 Score=43.72 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=42.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC---------------cHHHHHHHHHHhcCCCCcccceEEecC----CCCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS---------------NEKAVTAIVSFLLGPERAEKIQIFAGD----VVPRKKP 235 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~---------------~~~~~~~~l~~l~~~~~f~~~~iv~s~----~~~~~KP 235 (241)
+.+.||+.+.|..|++.|++++++||. .+......|+..|+ .|+. ..++.. ....+||
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id~-i~~Cph~p~~~c~cRKP 106 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KIDG-ILYCPHHPEDNCDCRKP 106 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccce-EEECCCCCCCCCcccCC
Confidence 577899999999999999999999993 12233444554444 3442 233332 1356899
Q ss_pred CCCCC
Q 026252 236 DPLCC 240 (241)
Q Consensus 236 ~p~~f 240 (241)
.|.+|
T Consensus 107 ~~gm~ 111 (181)
T COG0241 107 KPGML 111 (181)
T ss_pred ChHHH
Confidence 98765
No 140
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=95.04 E-value=0.04 Score=54.10 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=47.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~ 230 (241)
+++||+.+.|+.|++.|+++.++||.....+..+.+.+|+...++ .+++++++
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~--~~v~g~~l 580 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTS--QSVSGEKL 580 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCC--ceeEhHHh
Confidence 789999999999999999999999999999999999999887766 56666554
No 141
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=94.98 E-value=0.043 Score=51.18 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=39.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+++||+.++|++|+++|++++++||..+..++.+++.+|+.
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 478999999999999999999999999999999999999874
No 142
>PRK10444 UMP phosphatase; Provisional
Probab=94.86 E-value=0.065 Score=44.57 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH---HHHhcCCCCcccceEEecC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI---VSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~---l~~l~~~~~f~~~~iv~s~ 228 (241)
++.||+.++|+.|+++|+++.++||+.......+ |+.+|+.--.+ .++++.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~--~i~ts~ 70 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDS--VFYTSA 70 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHh--hEecHH
Confidence 4579999999999999999999999965444444 44455432222 566653
No 143
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=94.85 E-value=0.38 Score=43.79 Aligned_cols=28 Identities=11% Similarity=-0.107 Sum_probs=24.1
Q ss_pred HHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 184 lL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
.++..++.| +++|+|.+.+-.++..++.
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake 128 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKE 128 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHH
Confidence 455666778 9999999999999999998
No 144
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=94.69 E-value=0.063 Score=48.46 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhc---------CCCCcccceEEecC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL---------GPERAEKIQIFAGD 228 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~---------~~~~f~~~~iv~s~ 228 (241)
+..-|....+|+.||+.|.++.++||+.-..+...++.+- +.++|| .||+..
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFD--vVIv~A 242 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFD--VVIVDA 242 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCEC--EEEES-
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhee--EEEEcC
Confidence 3446899999999999999999999999999999999873 446788 666643
No 145
>PLN02423 phosphomannomutase
Probab=94.66 E-value=0.028 Score=46.67 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=19.6
Q ss_pred CCcEEE-EecCcccccCccchHHHHHHHHHHh
Q 026252 76 LPSALL-FDCDGVLVDTEKDGHRISFNDTFKE 106 (241)
Q Consensus 76 ~~k~Vi-FD~DGTLvd~~~~~~~~a~~~~~~~ 106 (241)
+++.++ ||+||||++.... +.....+++++
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~-i~~~~~~ai~~ 35 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKE-ATPEMLEFMKE 35 (245)
T ss_pred ccceEEEEeccCCCcCCCCc-CCHHHHHHHHH
Confidence 456666 9999999998764 33334444443
No 146
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=94.04 E-value=0.23 Score=41.43 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
..-+++.++|+.|.++|+++..+|..........++.+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~L 118 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLREL 118 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHH
Confidence 45689999999999999999999999777666666655
No 147
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=93.83 E-value=0.15 Score=44.02 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh---cCCCCcccceEEe
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFA 226 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l---~~~~~f~~~~iv~ 226 (241)
+.-.|....+|++|+++|.++.++||++-.++..-+..+ .+.++|| .|+.
T Consensus 239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFD--VVIv 291 (510)
T KOG2470|consen 239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFD--VVIV 291 (510)
T ss_pred hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhh--eeEE
Confidence 345578889999999999999999999999999888766 3456677 4544
No 148
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=93.52 E-value=0.043 Score=44.43 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=18.0
Q ss_pred EEEecCcccccCccchHHHHHHHHHHh
Q 026252 80 LLFDCDGVLVDTEKDGHRISFNDTFKE 106 (241)
Q Consensus 80 ViFD~DGTLvd~~~~~~~~a~~~~~~~ 106 (241)
|+||+||||++.... +.....+++++
T Consensus 1 i~~DlDGTLl~~~~~-i~~~~~~al~~ 26 (225)
T TIGR01482 1 IASDIDGTLTDPNRA-INESALEAIRK 26 (225)
T ss_pred CeEeccCccCCCCcc-cCHHHHHHHHH
Confidence 579999999998764 33344555554
No 149
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=93.48 E-value=0.2 Score=41.25 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHH-hcCCCCcccceEEecC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSF-LLGPERAEKIQIFAGD 228 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~---~~~~~~~l~~-l~~~~~f~~~~iv~s~ 228 (241)
.++||+.+.|+.|+++|+++.++||+. .......|.. +|+.--.+ .++++.
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~--~iits~ 68 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPD--QIITSG 68 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHH--HeeeHH
Confidence 568999999999999999999999884 3334344444 45433333 566653
No 150
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=93.26 E-value=0.16 Score=48.98 Aligned_cols=44 Identities=27% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
+++||+.+.|++|+++|++++++|+.+...++.+.+.+|+..++
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~ 611 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRA 611 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeec
Confidence 88999999999999999999999999999999999999885333
No 151
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=93.21 E-value=0.047 Score=40.41 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=12.5
Q ss_pred cEEEEecCcccccC
Q 026252 78 SALLFDCDGVLVDT 91 (241)
Q Consensus 78 k~ViFD~DGTLvd~ 91 (241)
|+|+||+||||++.
T Consensus 1 k~~~~D~dgtL~~~ 14 (132)
T TIGR01662 1 KGVVLDLDGTLTDD 14 (132)
T ss_pred CEEEEeCCCceecC
Confidence 68999999999974
No 152
>PRK10671 copA copper exporting ATPase; Provisional
Probab=93.12 E-value=0.15 Score=49.95 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=41.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
+++||+.+.|++|+++|++++++|+.+...++.+.+.+|+.++|.
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~ 694 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIA 694 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEe
Confidence 789999999999999999999999999999999999998876554
No 153
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=93.07 E-value=0.15 Score=38.28 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=34.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC--c----HHHHHHHHHHhcCCCCcccceEEecC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS--N----EKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~--~----~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
+.+.|++.+.+++|.+. +.++|+|.. . ..-.+.+.+.+...++-. .|+|+.
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn--~vfCgn 123 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQN--IVFCGN 123 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhh--EEEecC
Confidence 68899999999999987 999999988 2 223334444444434333 466654
No 154
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=92.99 E-value=0.18 Score=39.76 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 184 lL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
.|+.|+++|++++|+||.....+..+++.+|+..+|.
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~ 92 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ 92 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec
Confidence 5567788999999999999999999999998776664
No 155
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=92.95 E-value=0.86 Score=37.75 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=35.3
Q ss_pred HHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcC
Q 026252 170 IEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (241)
Q Consensus 170 ~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~ 215 (241)
..+....+++|+.++++.|.++++|+.|+|.+--..++..|++.+.
T Consensus 84 V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~ 129 (246)
T PF05822_consen 84 VKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGV 129 (246)
T ss_dssp HHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT-
T ss_pred HHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCC
Confidence 3444589999999999999999999999999999999999998843
No 156
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=92.93 E-value=0.049 Score=41.76 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=13.5
Q ss_pred CcEEEEecCcccccC
Q 026252 77 PSALLFDCDGVLVDT 91 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~ 91 (241)
+|+|+||+||||++.
T Consensus 1 ~~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 1 IRLLILDVDGVLTDG 15 (154)
T ss_pred CeEEEEeCceeEEcC
Confidence 589999999999993
No 157
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=92.68 E-value=0.059 Score=42.57 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=14.8
Q ss_pred CCcEEEEecCcccccC
Q 026252 76 LPSALLFDCDGVLVDT 91 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~ 91 (241)
.+|+|+||+||||++.
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4899999999999986
No 158
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.65 E-value=0.3 Score=39.44 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+.+.++|++|+++|++++++||.....+..+++.+++.
T Consensus 19 ~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 44789999999999999999999999999999998764
No 159
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.59 E-value=0.33 Score=39.69 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
..+++.+.|++|+++|++++++|+.+...+..+++.+|+..
T Consensus 16 ~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 16 EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 44678999999999999999999999898999999887644
No 160
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=92.48 E-value=0.066 Score=41.86 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.8
Q ss_pred CCcEEEEecCcccccC
Q 026252 76 LPSALLFDCDGVLVDT 91 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~ 91 (241)
.+|+++||+||||.|.
T Consensus 6 ~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 6 NIKLVILDVDGVMTDG 21 (169)
T ss_pred cCeEEEEeCceeeECC
Confidence 4899999999999997
No 161
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=92.46 E-value=0.33 Score=46.78 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHh
Q 026252 177 LRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 177 l~pgv~elL~~Lk~~-gi~v~ivTn~~~~~~~~~l~~l 213 (241)
+.+++.+.|++|.+. |+.++|+|+.....++..+..+
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~ 552 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDL 552 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 446777889999984 9999999999888777666543
No 162
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=92.17 E-value=0.086 Score=39.09 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.4
Q ss_pred cEEEEecCcccccCc
Q 026252 78 SALLFDCDGVLVDTE 92 (241)
Q Consensus 78 k~ViFD~DGTLvd~~ 92 (241)
|+++||+||||++..
T Consensus 1 kli~~DlD~Tl~~~~ 15 (128)
T TIGR01681 1 KVIVFDLDNTLWTGE 15 (128)
T ss_pred CEEEEeCCCCCCCCC
Confidence 679999999999884
No 163
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=92.13 E-value=0.36 Score=36.88 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=40.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcC-CCCcccceEEecCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG-PERAEKIQIFAGDV 229 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~-~~~f~~~~iv~s~~ 229 (241)
..++||+.++|+.|.+. +.++|.|.+.+..++.+++.+.- ..+|+ .++..+.
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~--~~~~r~~ 87 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFS--RRLYRDD 87 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEE--EEEEGGG
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccc--ccccccc
Confidence 56789999999999765 99999999999999999999965 45676 5665543
No 164
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=92.11 E-value=0.1 Score=40.22 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=12.6
Q ss_pred EEEEecCcccccCc
Q 026252 79 ALLFDCDGVLVDTE 92 (241)
Q Consensus 79 ~ViFD~DGTLvd~~ 92 (241)
.|+||+||||++++
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 38999999999987
No 165
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=92.08 E-value=0.25 Score=47.18 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
++.|++.+.+++||++|+++.++|+.++..++.+-+.+|+.+++
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~ 580 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVR 580 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhe
Confidence 78999999999999999999999999999999999999886655
No 166
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=92.02 E-value=0.24 Score=47.03 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=40.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
++.||+.+.+++|++.|+++.++|+.+...+..+.+.+|+.+++
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~ 489 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFI 489 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEE
Confidence 78999999999999999999999999999999999999876543
No 167
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=91.96 E-value=0.29 Score=46.58 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=41.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
++.||+.+.+++||+.|+++.++|+.+...+..+-+.+|+.++|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~ 484 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFV 484 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEE
Confidence 78999999999999999999999999999999999999887654
No 168
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=91.84 E-value=0.28 Score=46.66 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
++.||+.|.+++||+.|+++.++|+.+...+..+-+.+|+.++|
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~ 488 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFL 488 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999999999999999999999999886544
No 169
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=91.55 E-value=0.59 Score=39.38 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
..|.+.+-|.+|+++|-.+++=|-++++.+...++.+++.++|+ .++++.
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd--~ii~~G 192 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFD--IIICGG 192 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccE--EEEeCC
Confidence 56899999999999999999999999999999999999999998 566544
No 170
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=91.48 E-value=0.13 Score=41.71 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=12.9
Q ss_pred EEEecCcccccCccc
Q 026252 80 LLFDCDGVLVDTEKD 94 (241)
Q Consensus 80 ViFD~DGTLvd~~~~ 94 (241)
|+||+||||++....
T Consensus 1 i~~DlDGTLl~~~~~ 15 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK 15 (254)
T ss_dssp EEEECCTTTCSTTSS
T ss_pred cEEEECCceecCCCe
Confidence 689999999997665
No 171
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=91.37 E-value=0.52 Score=39.00 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+.+.+.+.|++|+++|++++++|+.....+...++.++..
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 35577889999999999999999999999898888888654
No 172
>PRK10444 UMP phosphatase; Provisional
Probab=90.86 E-value=0.14 Score=42.60 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.2
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
|++|+||+||||++...
T Consensus 1 ~~~v~~DlDGtL~~~~~ 17 (248)
T PRK10444 1 IKNVICDIDGVLMHDNV 17 (248)
T ss_pred CcEEEEeCCCceEeCCe
Confidence 58999999999999865
No 173
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=90.65 E-value=0.46 Score=40.42 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=32.9
Q ss_pred hcCCCCChhHHHHHHHHHHCC-CeEEEEeCCcHHHHHHHHH
Q 026252 172 KKLLPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVS 211 (241)
Q Consensus 172 ~~~~~l~pgv~elL~~Lk~~g-i~v~ivTn~~~~~~~~~l~ 211 (241)
.+++.|||..-|+|+.+|+.| ++++||||+..+.+...|.
T Consensus 88 ~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L~ 128 (296)
T COG0731 88 SGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEELK 128 (296)
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHhc
Confidence 355899999999999999999 7999999999744444433
No 174
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=90.56 E-value=0.64 Score=37.47 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=36.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+.+.+.+.|++|+++|++++++|+.+...+..+++.++..
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 46688899999999999999999999988888888888643
No 175
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=90.34 E-value=0.19 Score=41.62 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=12.7
Q ss_pred EEEEecCcccccCcc
Q 026252 79 ALLFDCDGVLVDTEK 93 (241)
Q Consensus 79 ~ViFD~DGTLvd~~~ 93 (241)
.|+||+||||++...
T Consensus 1 li~~DlDGTLl~~~~ 15 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH 15 (256)
T ss_pred CEEEeCCCCCCCCCC
Confidence 378999999999765
No 176
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=90.16 E-value=0.77 Score=38.09 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+...+.|++|+++|++++++|+.....+..+++.+++.
T Consensus 19 ~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 19 GPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 45789999999999999999999999999999988764
No 177
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=89.98 E-value=0.19 Score=35.71 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=13.0
Q ss_pred EEEecCcccccCccc
Q 026252 80 LLFDCDGVLVDTEKD 94 (241)
Q Consensus 80 ViFD~DGTLvd~~~~ 94 (241)
++||+||||++....
T Consensus 1 ~l~D~dGvl~~g~~~ 15 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEP 15 (101)
T ss_dssp EEEESTTTSEETTEE
T ss_pred CEEeCccEeEeCCCc
Confidence 689999999997764
No 178
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=89.96 E-value=0.22 Score=39.73 Aligned_cols=14 Identities=50% Similarity=0.899 Sum_probs=12.0
Q ss_pred EEEEecCcccccCc
Q 026252 79 ALLFDCDGVLVDTE 92 (241)
Q Consensus 79 ~ViFD~DGTLvd~~ 92 (241)
.|+||+||||++..
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 37899999999875
No 179
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=89.81 E-value=0.22 Score=41.89 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.4
Q ss_pred CCCCcEEEEecCcccccCccc
Q 026252 74 SVLPSALLFDCDGVLVDTEKD 94 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~~ 94 (241)
+..+++++||+||||++....
T Consensus 5 ~~~y~~~l~DlDGvl~~G~~~ 25 (269)
T COG0647 5 MDKYDGFLFDLDGVLYRGNEA 25 (269)
T ss_pred hhhcCEEEEcCcCceEeCCcc
Confidence 467999999999999998764
No 180
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=89.78 E-value=0.59 Score=39.63 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
.+.||+.|+|+.|++.|-.+.++||++....+...++
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK 74 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKK 74 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHH
Confidence 6779999999999999999999999965555555443
No 181
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=89.40 E-value=0.77 Score=45.61 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~ 229 (241)
++.|++.+.++.|++.|+++.++|+.....+..+-+.+|+..--. .++.+++
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~--~vi~G~~ 630 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGG--LAMEGKE 630 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCc--eEeeHHH
Confidence 788999999999999999999999999999999999998764322 3555544
No 182
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=89.23 E-value=0.76 Score=44.53 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|+.+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 789999999999999999999999999999999999998854
No 183
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=88.62 E-value=0.91 Score=45.00 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
+++||+.+.|+.|++.|+++.++|+.....+..+.+.+|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCC
Confidence 689999999999999999999999999999999999998754
No 184
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=88.39 E-value=0.22 Score=38.16 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=13.6
Q ss_pred cEEEEecCcccccCccc
Q 026252 78 SALLFDCDGVLVDTEKD 94 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~ 94 (241)
|++|||+||||+.....
T Consensus 1 k~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEEE-CTTTEEEESS
T ss_pred CEEEEeCCCcEEEEeec
Confidence 57999999999997753
No 185
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=88.36 E-value=1.1 Score=43.52 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~ 214 (241)
++.||+...+..||+.|++++++|+.+...++..-+.+|
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG 761 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG 761 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC
Confidence 788999999999999999999999999999999999997
No 186
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=88.28 E-value=0.46 Score=38.38 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=12.3
Q ss_pred EEEecCcccccCcc
Q 026252 80 LLFDCDGVLVDTEK 93 (241)
Q Consensus 80 ViFD~DGTLvd~~~ 93 (241)
|++|+||||++...
T Consensus 2 i~~DlDGTLL~~~~ 15 (221)
T TIGR02463 2 VFSDLDGTLLDSHS 15 (221)
T ss_pred EEEeCCCCCcCCCC
Confidence 78999999999765
No 187
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=88.24 E-value=1.2 Score=38.56 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.6
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEeCCcHH
Q 026252 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (241)
Q Consensus 173 ~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~ 204 (241)
+++.++|...++++.++++|+.+.|.||+...
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 55778999999999999999999999999653
No 188
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=88.19 E-value=1.3 Score=34.08 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH---HHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT---AIVSF 212 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~---~~l~~ 212 (241)
...||+.+++++|+++|+++.++|+.+..... ..++.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 56799999999999999999999999766653 55555
No 189
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=88.09 E-value=1.5 Score=32.42 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=36.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC-cHHHHHHHHHHhcCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGPE 217 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~-~~~~~~~~l~~l~~~~ 217 (241)
+-.|+++...|..|+++|+.+++.|++ ....+...|+.+.+..
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~ 86 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQ 86 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCc
Confidence 678999999999999999999999999 5677788888775443
No 190
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=88.03 E-value=1 Score=36.43 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
.+.|...+.|+.|+++|++++++|+.....+..+++.++..
T Consensus 15 ~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 15 KISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred eeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 47799999999999999999999999999999999987655
No 191
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=87.81 E-value=0.38 Score=39.31 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.2
Q ss_pred EEEEecCcccccCcc
Q 026252 79 ALLFDCDGVLVDTEK 93 (241)
Q Consensus 79 ~ViFD~DGTLvd~~~ 93 (241)
.|+||+||||++...
T Consensus 1 li~~DlDGTLl~~~~ 15 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY 15 (225)
T ss_pred CEEEeCCCCCcCCCC
Confidence 378999999999544
No 192
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=87.49 E-value=0.29 Score=40.24 Aligned_cols=15 Identities=53% Similarity=0.678 Sum_probs=13.4
Q ss_pred EEEecCcccccCccc
Q 026252 80 LLFDCDGVLVDTEKD 94 (241)
Q Consensus 80 ViFD~DGTLvd~~~~ 94 (241)
|+||+||||+++...
T Consensus 1 ~lfD~DGvL~~~~~~ 15 (236)
T TIGR01460 1 FLFDIDGVLWLGHKP 15 (236)
T ss_pred CEEeCcCccCcCCcc
Confidence 589999999999875
No 193
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=87.19 E-value=2.7 Score=35.70 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=16.3
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
..++.+|||+||||...+.
T Consensus 20 ~~~DtfifDcDGVlW~g~~ 38 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWLGEK 38 (306)
T ss_pred hhcCEEEEcCCcceeecCC
Confidence 4689999999999998655
No 194
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=86.96 E-value=1.5 Score=34.88 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=34.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
.++.+.+.+.|++|+++|++++++|+.....+..+++.+
T Consensus 16 ~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 16 HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 357799999999999999999999999999999888863
No 195
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=86.42 E-value=1.3 Score=43.54 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
++.|++.+.+++|++.|+++.++|+.....+..+.+.+|+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 67899999999999999999999999999999999999885
No 196
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=86.13 E-value=1.3 Score=43.81 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
++.|++.+.++.|++.|+++.++|+.+...+..+.+.+|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 67899999999999999999999999999999999999884
No 197
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=86.04 E-value=1.6 Score=43.34 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~ 230 (241)
-++.+++.+.++.|++.|+++.++|+.....+..+-+..|+...-+...++.+.++
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el 601 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAEL 601 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHh
Confidence 38899999999999999999999999999999999999986544320036667653
No 198
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=85.79 E-value=1.4 Score=43.66 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
++.|++.+.+++|++.|+++.++|+.+...+..+.+.+|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 78899999999999999999999999999999999999884
No 199
>PRK06769 hypothetical protein; Validated
Probab=85.72 E-value=0.52 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.2
Q ss_pred CCCCcEEEEecCcccccC
Q 026252 74 SVLPSALLFDCDGVLVDT 91 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~ 91 (241)
|..|++|+||.||||.-+
T Consensus 1 ~~~~~~~~~d~d~~~~~~ 18 (173)
T PRK06769 1 MTNIQAIFIDRDGTIGGD 18 (173)
T ss_pred CCCCcEEEEeCCCcccCC
Confidence 367999999999999654
No 200
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=85.42 E-value=2.3 Score=39.82 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.8
Q ss_pred CCcEEEEecCcccccCcc
Q 026252 76 LPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~ 93 (241)
.-|.||=|+||||..++.
T Consensus 529 n~kIVISDIDGTITKSDv 546 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDV 546 (738)
T ss_pred CCcEEEecCCCceEhhhh
Confidence 347899999999988774
No 201
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=85.31 E-value=0.51 Score=36.43 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=11.8
Q ss_pred cEEEEecCcccccCcc
Q 026252 78 SALLFDCDGVLVDTEK 93 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~ 93 (241)
|.+.||+||||+.+..
T Consensus 1 Kia~fD~DgTLi~~~s 16 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS 16 (159)
T ss_dssp SEEEE-SCTTTEE-ST
T ss_pred CEEEEeCCCCccCCCC
Confidence 5678999999998765
No 202
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=85.06 E-value=1.9 Score=41.63 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCccc--ceEEecCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK--IQIFAGDVV 230 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~--~~iv~s~~~ 230 (241)
+++|++.+.++.+++.|+++.++|+.....+..+.+.+|+...-+. ...+++.|+
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~ef 640 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEF 640 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhh
Confidence 7899999999999999999999999999999999999986554431 134555543
No 203
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=84.93 E-value=0.73 Score=38.67 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=12.2
Q ss_pred cEEEEecCcccccC
Q 026252 78 SALLFDCDGVLVDT 91 (241)
Q Consensus 78 k~ViFD~DGTLvd~ 91 (241)
.+|+||+||||++.
T Consensus 15 ~li~~D~DGTLl~~ 28 (266)
T PRK10187 15 YAWFFDLDGTLAEI 28 (266)
T ss_pred EEEEEecCCCCCCC
Confidence 57888999999984
No 204
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=84.70 E-value=1.9 Score=43.38 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
++.||+.+.|+.|++.|+++.++|+.....+..+.+.+|+..
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~ 687 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIP 687 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 789999999999999999999999999999999999998853
No 205
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=84.53 E-value=0.98 Score=35.11 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
..+++|++|+||||.....
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~ 41 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH 41 (170)
T ss_pred CCCCEEEEecCCccccCCC
Confidence 4689999999999997654
No 206
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=84.32 E-value=0.61 Score=38.52 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.4
Q ss_pred CcEEEEecCcccccCc
Q 026252 77 PSALLFDCDGVLVDTE 92 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~ 92 (241)
-.+++||+||||++..
T Consensus 3 ~~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIV 18 (244)
T ss_pred cEEEEEecCccccCCc
Confidence 3688999999999853
No 207
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.21 E-value=7.2 Score=32.04 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=34.0
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcC
Q 026252 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~ 215 (241)
..++.||+.|.++.|.+. .+=+|+|.+....+..+...+|+
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 368999999999999876 56667888877888888888876
No 208
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=84.11 E-value=1.2 Score=26.43 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 182 ~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
.|+.++|++.|++.|-||.+++...+..|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 38889999999999999999999998888765
No 209
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=84.06 E-value=1.2 Score=38.42 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCChhHHHHHHHHHHC----CCeEEEEeCCc---HHH-HHHHHHHhcC
Q 026252 176 PLRPGVAKLIDQALEK----GVKVAVCSTSN---EKA-VTAIVSFLLG 215 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~----gi~v~ivTn~~---~~~-~~~~l~~l~~ 215 (241)
.+.||+.|+|+.|+++ |+++.++||+. ... ++.+.+.+|.
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~ 63 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGV 63 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCC
Confidence 5689999999999998 99999999995 343 4444466654
No 210
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=84.00 E-value=0.76 Score=38.10 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.9
Q ss_pred EEEEecCcccccCcc
Q 026252 79 ALLFDCDGVLVDTEK 93 (241)
Q Consensus 79 ~ViFD~DGTLvd~~~ 93 (241)
.|+||+||||++...
T Consensus 1 li~~DlDGTll~~~~ 15 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG 15 (256)
T ss_pred CEEEcCCCCCcCCCC
Confidence 378999999999875
No 211
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=83.34 E-value=2.6 Score=34.08 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=31.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
..||+.|.++.|+++++++=.|||...+.-+.+.+++
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL 60 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL 60 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH
Confidence 5699999999999999999999999766666666655
No 212
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=82.97 E-value=2.4 Score=42.52 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
++.|++.+.|++|+++|+++.++|+.....+..+.+.+|+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 77999999999999999999999999999999999999875
No 213
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=82.24 E-value=3.7 Score=41.46 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
++.|++.+.|+.|++.|+++.++|+.+...+..+.+..|+..
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~ 697 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVN 697 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 789999999999999999999999999999999999998764
No 214
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=81.21 E-value=7.2 Score=30.41 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=22.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~ 207 (241)
.+..+|...|..+++. .+++-+|.......+
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~ 102 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTR 102 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHH
Confidence 3457788889999887 688888887544443
No 215
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=80.92 E-value=1.7 Score=35.79 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=16.5
Q ss_pred EEEEecCccccc---CccchHHHHHHHHHHh
Q 026252 79 ALLFDCDGVLVD---TEKDGHRISFNDTFKE 106 (241)
Q Consensus 79 ~ViFD~DGTLvd---~~~~~~~~a~~~~~~~ 106 (241)
.|+.|+||||++ .+.. ....+.+++++
T Consensus 3 li~tDlDGTLl~~~~~~~~-~~~~~~~~i~~ 32 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQ-ALLRLNALLED 32 (249)
T ss_pred EEEEcCCCcCcCCCCCChH-HHHHHHHHHHH
Confidence 466799999997 4432 33444444443
No 216
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=80.52 E-value=4.1 Score=31.99 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=26.5
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCcHH
Q 026252 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~ 204 (241)
++.+++++.++++.+++.|+.+.+.||+...
T Consensus 72 EPll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 72 EPTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred cccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 3667788899999999999999999999643
No 217
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=80.01 E-value=2.8 Score=42.27 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER 218 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~ 218 (241)
++.|||.+.|+.|++.|+++.++|+...+.+..+.+..|+...
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~ 673 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSR 673 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCC
Confidence 7899999999999999999999999998999998888876543
No 218
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=79.99 E-value=1 Score=35.15 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.8
Q ss_pred cEEEEecCccccc
Q 026252 78 SALLFDCDGVLVD 90 (241)
Q Consensus 78 k~ViFD~DGTLvd 90 (241)
++++||.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 7899999999994
No 219
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.62 E-value=4.6 Score=33.58 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=36.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
..+..|+.++.+.|.++++++.+.|.+--..++.++....+..
T Consensus 137 i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~ 179 (298)
T KOG3128|consen 137 IALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLH 179 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccC
Confidence 5677999999999999999999999998888888887764443
No 220
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=79.53 E-value=1.3 Score=36.22 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.0
Q ss_pred EEEEecCcccccCccc
Q 026252 79 ALLFDCDGVLVDTEKD 94 (241)
Q Consensus 79 ~ViFD~DGTLvd~~~~ 94 (241)
+|++|+||||++....
T Consensus 1 li~~DlDgTLl~~~~~ 16 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG 16 (236)
T ss_pred CeEEeccccccCCHHH
Confidence 3678999999997654
No 221
>PLN02151 trehalose-phosphatase
Probab=78.42 E-value=1.7 Score=38.12 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=11.7
Q ss_pred CcEEEEecCcccccC
Q 026252 77 PSALLFDCDGVLVDT 91 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~ 91 (241)
-.+|++|+||||++.
T Consensus 98 ~~ll~lDyDGTL~PI 112 (354)
T PLN02151 98 QIVMFLDYDGTLSPI 112 (354)
T ss_pred ceEEEEecCccCCCC
Confidence 356778999999943
No 222
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=78.19 E-value=1.2 Score=34.32 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=12.4
Q ss_pred EEEecCcccccCcc
Q 026252 80 LLFDCDGVLVDTEK 93 (241)
Q Consensus 80 ViFD~DGTLvd~~~ 93 (241)
|++|+||||..++.
T Consensus 2 VvsDIDGTiT~SD~ 15 (157)
T PF08235_consen 2 VVSDIDGTITKSDV 15 (157)
T ss_pred EEEeccCCcCccch
Confidence 79999999998874
No 223
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=77.52 E-value=5.9 Score=32.61 Aligned_cols=41 Identities=2% Similarity=-0.087 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+..|...+++++++++|+.++++|+.....++.+++.+++.
T Consensus 21 ~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 21 QALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 34588889999999999999999999999999998877654
No 224
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=77.52 E-value=5 Score=36.85 Aligned_cols=40 Identities=28% Similarity=0.299 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~ 215 (241)
++.|++.+.++.|++.|+++.++|+.....+..+-+.+|+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 7899999999999999999999999999999888888764
No 225
>PLN03017 trehalose-phosphatase
Probab=76.33 E-value=2.1 Score=37.64 Aligned_cols=13 Identities=31% Similarity=0.601 Sum_probs=10.6
Q ss_pred CcEEEEecCcccc
Q 026252 77 PSALLFDCDGVLV 89 (241)
Q Consensus 77 ~k~ViFD~DGTLv 89 (241)
-.+|++|+||||+
T Consensus 111 ~~llflD~DGTL~ 123 (366)
T PLN03017 111 QIVMFLDYDGTLS 123 (366)
T ss_pred CeEEEEecCCcCc
Confidence 3466779999999
No 226
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=75.98 E-value=1.9 Score=38.61 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.4
Q ss_pred CCcEEEEecCcccccCccc
Q 026252 76 LPSALLFDCDGVLVDTEKD 94 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~ 94 (241)
..+.||+|+||||..++..
T Consensus 374 n~kiVVsDiDGTITkSD~~ 392 (580)
T COG5083 374 NKKIVVSDIDGTITKSDAL 392 (580)
T ss_pred CCcEEEEecCCcEEehhhH
Confidence 4689999999999998864
No 227
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=75.69 E-value=7.7 Score=36.63 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=46.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC-CCcccceEEecCCCCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP-ERAEKIQIFAGDVVPR 232 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~-~~f~~~~iv~s~~~~~ 232 (241)
.+++|++.++|+++.+. +.+.|.|=+.+..+..+++.+.-. .||.. .|++-++-+.
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~d-RIisrde~~~ 256 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGD-RIISRDESPF 256 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccc-eEEEecCCCc
Confidence 68999999999999987 999999999999999999988433 46653 7888887443
No 228
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=75.55 E-value=7.6 Score=31.06 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
..+|++.++|+.+-+ .+.|+|-|.+....++.+++.+++.
T Consensus 45 ~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 45 LMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTELGVL 84 (195)
T ss_pred EeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHhccc
Confidence 356999999999988 5999999999999999999988653
No 229
>COG4996 Predicted phosphatase [General function prediction only]
Probab=74.70 E-value=1.7 Score=32.40 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=13.1
Q ss_pred cEEEEecCcccccCcc
Q 026252 78 SALLFDCDGVLVDTEK 93 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~ 93 (241)
++|+||.||||.|-..
T Consensus 1 ~~i~~d~d~t~wdhh~ 16 (164)
T COG4996 1 RAIVFDADKTLWDHHN 16 (164)
T ss_pred CcEEEeCCCccccccc
Confidence 4789999999988543
No 230
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=74.23 E-value=6.1 Score=32.27 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
+.+.+.+|++.|++|..+|..++..+..+-+.+|+..
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 3478889999999999999999999999999998764
No 231
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=73.95 E-value=3.3 Score=34.16 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCcHH
Q 026252 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~ 204 (241)
++-++++..++++.|++.|+++.+.||+...
T Consensus 82 EPll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 82 NPALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred chhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 3556688999999999999999999999743
No 232
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=73.31 E-value=5.5 Score=33.36 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=33.1
Q ss_pred CCCChhHHHHHHHHHH-CCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALE-KGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~-~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
..+.|.+.+.|++|++ .|+.++|+|+.+...+..+++.+
T Consensus 35 ~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 35 VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 3567899999999998 69999999999988887776644
No 233
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=72.21 E-value=6.6 Score=29.35 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=36.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
-.+++.+.+.|+.|++. +.++|.|+.....+..+.+..|..
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~ 69 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP 69 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc
Confidence 47899999999999999 999999999888899888887754
No 234
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=72.06 E-value=15 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=18.3
Q ss_pred cEEEEecCcccccCccchHHHHHHHHHHh
Q 026252 78 SALLFDCDGVLVDTEKDGHRISFNDTFKE 106 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~~~~~a~~~~~~~ 106 (241)
-.++||+||||...... ...-+.+.+.+
T Consensus 12 ~l~lfdvdgtLt~~r~~-~~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQK-VTPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCcccccccc-CCHHHHHHHHH
Confidence 47899999999987654 32334444443
No 235
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=71.89 E-value=2.7 Score=33.62 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.1
Q ss_pred CCCcEEEEecCcccccCc
Q 026252 75 VLPSALLFDCDGVLVDTE 92 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~ 92 (241)
...+++|.|+|+||++..
T Consensus 19 ~~kklLVLDLDeTLvh~~ 36 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHR 36 (195)
T ss_pred CCCcEEEEeCCCceEccc
Confidence 345899999999999864
No 236
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=71.36 E-value=7.2 Score=31.62 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=28.8
Q ss_pred CCCChh-HHHHHHHHHHCCCeEEEEeCC--cHHHHHHHHH
Q 026252 175 LPLRPG-VAKLIDQALEKGVKVAVCSTS--NEKAVTAIVS 211 (241)
Q Consensus 175 ~~l~pg-v~elL~~Lk~~gi~v~ivTn~--~~~~~~~~l~ 211 (241)
+.+.++ +.++++.+|+.|+.+++.||+ +.+....++.
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~ 88 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAK 88 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 556677 689999999999999999999 4444444444
No 237
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=70.92 E-value=2.8 Score=35.22 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.9
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
.+.++++||+||||++..+
T Consensus 16 a~~~~~~lDyDGTl~~i~~ 34 (266)
T COG1877 16 ARKRLLFLDYDGTLTEIVP 34 (266)
T ss_pred ccceEEEEecccccccccc
Confidence 4568999999999998765
No 238
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=70.60 E-value=9.7 Score=33.21 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.5
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 173 ~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
+++-++|+..++++.+++.|+.+.+.||+.
T Consensus 62 GEPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 62 GEPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 346788999999999999999999999994
No 239
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=70.52 E-value=3.4 Score=40.62 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.3
Q ss_pred CCCcEEEEecCcccccCc
Q 026252 75 VLPSALLFDCDGVLVDTE 92 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~ 92 (241)
.+.++|++|+||||++..
T Consensus 594 ~~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQA 611 (854)
T ss_pred hcCeEEEEecCCcccCCc
Confidence 457899999999999765
No 240
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=70.43 E-value=3.8 Score=33.92 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=18.7
Q ss_pred cEEEEecCcccccCccchHHHHHHHHHH
Q 026252 78 SALLFDCDGVLVDTEKDGHRISFNDTFK 105 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~~~~~a~~~~~~ 105 (241)
..++.|+||||++.+.. ....+.++++
T Consensus 3 ~ll~sDlD~Tl~~~~~~-~~~~l~~~l~ 29 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDDE-ALARLEELLE 29 (247)
T ss_dssp EEEEEETBTTTBHCHHH-HHHHHHHHHH
T ss_pred EEEEEECCCCCcCCCHH-HHHHHHHHHH
Confidence 57889999999954443 3445666665
No 241
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=70.28 E-value=57 Score=33.33 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+|-.||.|.|+.|++.|+|+.++|+.-.+.+.-+.-.-++.
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll 691 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLL 691 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCC
Confidence 67799999999999999999999998777666665544443
No 242
>PLN03190 aminophospholipid translocase; Provisional
Probab=69.98 E-value=9.5 Score=39.01 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
++.+|+.+.++.|++.|+++.++|+.....+..+-...++..
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~ 767 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLT 767 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCC
Confidence 789999999999999999999999998888888877665543
No 243
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=69.69 E-value=3.1 Score=32.09 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.5
Q ss_pred cEEEEecCcccccCcc
Q 026252 78 SALLFDCDGVLVDTEK 93 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~ 93 (241)
++++||.||||.+..+
T Consensus 2 ~~~~~d~dg~l~~~~~ 17 (161)
T TIGR01261 2 KILFIDRDGTLIEEPP 17 (161)
T ss_pred CEEEEeCCCCccccCC
Confidence 6899999999998543
No 244
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=69.68 E-value=3.2 Score=31.36 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.3
Q ss_pred cEEEEecCcccccCc
Q 026252 78 SALLFDCDGVLVDTE 92 (241)
Q Consensus 78 k~ViFD~DGTLvd~~ 92 (241)
..+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 578999999999975
No 245
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=69.40 E-value=9.2 Score=35.24 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
.+-||.+|-+.+||+.|++-..+|+.++-....+-+..|+++|.
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfi 490 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFI 490 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhh
Confidence 45699999999999999999999999999899998888887654
No 246
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=69.19 E-value=4.9 Score=32.84 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.5
Q ss_pred CCcEEEEecCccccc
Q 026252 76 LPSALLFDCDGVLVD 90 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd 90 (241)
++..|..|+||||++
T Consensus 6 ~~~lIFtDlD~TLl~ 20 (274)
T COG3769 6 MPLLIFTDLDGTLLP 20 (274)
T ss_pred cceEEEEcccCcccC
Confidence 456777799999999
No 247
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=68.51 E-value=11 Score=32.54 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=27.5
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 173 ~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
+++-++|+..++++.++++|..+.++||+.
T Consensus 81 GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 81 GEPLLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEecCce
Confidence 457889999999999999999999999996
No 248
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=68.49 E-value=0.73 Score=27.24 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=21.0
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
|+.++|++.|+..|-+|..++......|..+
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 5677889999999999999999888887765
No 249
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=67.84 E-value=3.4 Score=31.87 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.8
Q ss_pred cEEEEecCcccccCcc
Q 026252 78 SALLFDCDGVLVDTEK 93 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~ 93 (241)
+.+++|+|+||+.+..
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 5789999999998864
No 250
>PLN02580 trehalose-phosphatase
Probab=67.83 E-value=3.2 Score=36.79 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=12.9
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
-.+++||+||||.....
T Consensus 119 ~~~LfLDyDGTLaPIv~ 135 (384)
T PLN02580 119 KIALFLDYDGTLSPIVD 135 (384)
T ss_pred CeEEEEecCCccCCCCC
Confidence 35677799999987543
No 251
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=66.96 E-value=8.8 Score=27.70 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=26.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.+.+.+.++.++++|.++..+|++....+..
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 445788999999999999999999986554443
No 252
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=66.41 E-value=4.2 Score=34.42 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.5
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
..+..|+||+|.||+..+.
T Consensus 120 ~~phVIVfDlD~TLItd~~ 138 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG 138 (297)
T ss_pred CCCcEEEEECCCcccccCC
Confidence 4567899999999997654
No 253
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=66.26 E-value=14 Score=29.96 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=29.2
Q ss_pred cCCCCChh-HHHHHHHHHHCCCeEEEEeCCc----HHHHHHHHH
Q 026252 173 KLLPLRPG-VAKLIDQALEKGVKVAVCSTSN----EKAVTAIVS 211 (241)
Q Consensus 173 ~~~~l~pg-v~elL~~Lk~~gi~v~ivTn~~----~~~~~~~l~ 211 (241)
+++.+.++ +.++++.+++.|+++.+.||+. .+.+..+++
T Consensus 74 GEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~ 117 (235)
T TIGR02493 74 GEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLE 117 (235)
T ss_pred cccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHH
Confidence 34667788 4599999999999999999993 344455544
No 254
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=65.59 E-value=14 Score=32.62 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred cCCCCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 173 ~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
+++-++|+..++++.++++|+.+.+.||+.
T Consensus 71 GEPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 71 GEPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred CccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 447788999999999999999999999994
No 255
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=65.21 E-value=16 Score=35.83 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~ 229 (241)
+.+|||.+.++.+++.|+++-.||+.+-..++.+...-|+...-++..++-+.|
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~e 700 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKE 700 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchh
Confidence 789999999999999999999999999888999888887765544223444443
No 256
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=64.66 E-value=13 Score=30.54 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=25.7
Q ss_pred cCCCCChhH-HHHHHHHHHCCCeEEEEeCCcH
Q 026252 173 KLLPLRPGV-AKLIDQALEKGVKVAVCSTSNE 203 (241)
Q Consensus 173 ~~~~l~pgv-~elL~~Lk~~gi~v~ivTn~~~ 203 (241)
+++.+.++. .++++.+++.|+++++.||+..
T Consensus 79 GEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 79 GEAILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred ccHhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 346677884 5999999999999999999963
No 257
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=63.69 E-value=8.8 Score=27.78 Aligned_cols=33 Identities=6% Similarity=0.141 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.+.+.++++.+|++|.++..+|++....+..
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 58 GETDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 456889999999999999999999986554444
No 258
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=63.25 E-value=6.4 Score=32.15 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=8.0
Q ss_pred EEecCcccccCcc
Q 026252 81 LFDCDGVLVDTEK 93 (241)
Q Consensus 81 iFD~DGTLvd~~~ 93 (241)
+||+||||.+...
T Consensus 1 ~lDyDGTL~p~~~ 13 (235)
T PF02358_consen 1 FLDYDGTLAPIVD 13 (235)
T ss_dssp EEE-TTTSS---S
T ss_pred CcccCCccCCCCC
Confidence 5899999999765
No 259
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=61.07 E-value=5.9 Score=30.40 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCcEEEEecCcccccCccc
Q 026252 76 LPSALLFDCDGVLVDTEKD 94 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~ 94 (241)
+...+++|+|.||+.+...
T Consensus 5 ~kl~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKD 23 (156)
T ss_pred CceEEEEeCCCCccccccc
Confidence 3467899999999998764
No 260
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=61.02 E-value=25 Score=27.05 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=29.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHH---HHHHHHHHh
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFL 213 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~---~~~~~l~~l 213 (241)
...||+.++...+.++||++.-+|.-+.- ..+..|+..
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 46799999999999999999999998533 334444444
No 261
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=60.33 E-value=13 Score=26.91 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=26.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~ 207 (241)
.-.+.+.+.++.++++|.++..+|+.....+.
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 58 GNTKETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 44578899999999999999999998655433
No 262
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=60.33 E-value=21 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCcH
Q 026252 178 RPGVAKLIDQALEKGVKVAVCSTSNE 203 (241)
Q Consensus 178 ~pgv~elL~~Lk~~gi~v~ivTn~~~ 203 (241)
.+++.++++.+++.|+++.+-||...
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 36788999999999999999999754
No 263
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=59.95 E-value=25 Score=28.49 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
++++ ++++|++++++|+.....+..+++.+++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 6666 58889999999999999999999988664
No 264
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=59.61 E-value=17 Score=30.78 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.9
Q ss_pred cCCCCChhH-HHHHHHHHHCCCeEEEEeCCc
Q 026252 173 KLLPLRPGV-AKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 173 ~~~~l~pgv-~elL~~Lk~~gi~v~ivTn~~ 202 (241)
+++.+.++. .++++.+++.|+.+.+.||+.
T Consensus 134 GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 134 GEPLLQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred cchhchHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 456778885 699999999999999999994
No 265
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=59.29 E-value=8.6 Score=33.96 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.8
Q ss_pred CCCCcEEEEecCcccccCccc
Q 026252 74 SVLPSALLFDCDGVLVDTEKD 94 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~~ 94 (241)
+..-|.+.||+||||+|+.+.
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg 92 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSG 92 (422)
T ss_pred CCCcceEEEecCCceeecCCc
Confidence 455789999999999999873
No 266
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=58.03 E-value=19 Score=25.94 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI 209 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~ 209 (241)
.-..+..+.++.++++|.++.++|+.....+...
T Consensus 64 g~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 64 GETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp STTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred ccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 4457788999999999999999998865544443
No 267
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=57.57 E-value=21 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Q 026252 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIV 210 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~~~~~~~~l 210 (241)
+.++|.+|+++ +.|||||+++-..+..-+
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl 29 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL 29 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH
Confidence 56899999875 999999999766665555
No 268
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=55.87 E-value=13 Score=28.65 Aligned_cols=19 Identities=16% Similarity=0.114 Sum_probs=15.6
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
..+|+|+||-|++|.-...
T Consensus 41 ~~ikavVlDKDNcit~P~~ 59 (190)
T KOG2961|consen 41 KGIKAVVLDKDNCITAPYS 59 (190)
T ss_pred cCceEEEEcCCCeeeCCcc
Confidence 3689999999999976544
No 269
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=55.59 E-value=16 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=27.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI 209 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~ 209 (241)
.-.+.+.++++.++++|.++.++|+.....+...
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ 116 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPESTLGKL 116 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence 4568899999999999999999999875555443
No 270
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=54.91 E-value=40 Score=26.73 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~ 211 (241)
+=+.++|+.-.++|-.++.+|+.....++..-+
T Consensus 117 evA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk 149 (237)
T COG3700 117 EVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSK 149 (237)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccccch
Confidence 345577777778899999999986554444433
No 271
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=54.47 E-value=24 Score=24.78 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
-...=|..+.|+.|+...-++.|+..+.....+..++..
T Consensus 18 GkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyY 56 (100)
T COG1911 18 GKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYY 56 (100)
T ss_pred CCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHH
Confidence 366789999999999988888888877767777777766
No 272
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=52.54 E-value=14 Score=31.92 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=14.9
Q ss_pred CcEEEEecCcccccCccc
Q 026252 77 PSALLFDCDGVLVDTEKD 94 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~~ 94 (241)
.=++.||+||||+.....
T Consensus 35 ~fgfafDIDGVL~RG~~~ 52 (389)
T KOG1618|consen 35 TFGFAFDIDGVLFRGHRP 52 (389)
T ss_pred ceeEEEecccEEEecCCC
Confidence 347899999999998764
No 273
>PLN02382 probable sucrose-phosphatase
Probab=52.53 E-value=16 Score=32.87 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=0.0
Q ss_pred EEEEecCcccccC--ccchHHHHHHHHHHhh
Q 026252 79 ALLFDCDGVLVDT--EKDGHRISFNDTFKEK 107 (241)
Q Consensus 79 ~ViFD~DGTLvd~--~~~~~~~a~~~~~~~~ 107 (241)
.|+-|+||||++. ....-...+..++.+.
T Consensus 11 lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~ 41 (413)
T PLN02382 11 MIVSDLDHTMVDHHDPENLSLLRFNALWEAE 41 (413)
T ss_pred EEEEcCCCcCcCCCCccchhHHHHHHHHHHh
No 274
>PHA01735 hypothetical protein
Probab=52.33 E-value=64 Score=21.08 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHH
Q 026252 152 KQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (241)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~ 204 (241)
++...+++......+..++..+.. --.+....++.||++++.-+.+.|++-.
T Consensus 7 ee~fs~LH~~lt~El~~RiksgeA-TtaDL~AA~d~Lk~NdItgv~~~gspl~ 58 (76)
T PHA01735 7 EEQFDELHQLLTNELLSRIKSGEA-TTADLRAACDWLKSNDITGVAVDGSPLA 58 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHCCCceeeCCCCHHH
Confidence 344555666555666666666543 3477889999999999998888888644
No 275
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=51.42 E-value=31 Score=30.96 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=24.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEE-eCCc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVC-STSN 202 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~iv-Tn~~ 202 (241)
+-.+|.+.++|+.+++.|+++++. ||+.
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 677899999999999999999995 9963
No 276
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=51.39 E-value=19 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~ 205 (241)
.-.+.+.++++.++++|.++..+|+.....
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 556899999999999999999999985443
No 277
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=51.22 E-value=26 Score=29.27 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCC--cHHHHHHHHH
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVS 211 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~--~~~~~~~~l~ 211 (241)
.++.+.++++.+|+.|+.+++.||+ .....+.+++
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~ 133 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLP 133 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHh
Confidence 3477789999999999999999999 4444434444
No 278
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=50.80 E-value=22 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=24.4
Q ss_pred ChhHHHHHHHHHHCCCeEEEEeCCcHHHHH
Q 026252 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (241)
Q Consensus 178 ~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~ 207 (241)
.+.+.++++.++++|.++.++|++......
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 467889999999999999999998654333
No 279
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=47.98 E-value=28 Score=25.02 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
.-.+++.+.++.++++|.++..+|+..
T Consensus 54 G~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 54 GNTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 445788999999999999999999765
No 280
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=47.90 E-value=26 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEe
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCS 199 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivT 199 (241)
.-.+.+.++++.++++|.++..+|
T Consensus 58 g~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 58 GRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEe
Confidence 345789999999999999999998
No 281
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=47.65 E-value=20 Score=32.54 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=14.3
Q ss_pred CCCCcEEEEecCcccccCcc
Q 026252 74 SVLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~ 93 (241)
+..|++|-||+|-||+.+..
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-C
T ss_pred cccCCEEEECcccchhhcCH
Confidence 46799999999999999876
No 282
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=47.53 E-value=23 Score=28.49 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=34.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
....|.+.++|+.||++ +.+++|-+++-..+..-|. ..+.+.|| .++.-.
T Consensus 27 ~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k~~eqlG-~~Vl~~fD--Y~F~EN 76 (252)
T KOG3189|consen 27 QKVTPEMLEFLQKLRKK-VTIGFVGGSDLSKQQEQLG-DNVLEEFD--YVFSEN 76 (252)
T ss_pred ccCCHHHHHHHHHHhhh-eEEEEeecHHHHHHHHHhc-hhHHhhhc--ccccCC
Confidence 46789999999999887 9999998876444433331 12455666 455433
No 283
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=47.50 E-value=23 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~ 207 (241)
.-.+.+.+.++.++++|.++..+|++....+.
T Consensus 90 G~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 121 (154)
T TIGR00441 90 GNSKNVLKAIEAAKDKGMKTITLAGKDGGKMA 121 (154)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCchh
Confidence 45688999999999999999999997644433
No 284
>PRK13937 phosphoheptose isomerase; Provisional
Probab=47.48 E-value=26 Score=27.61 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~ 207 (241)
.-.+.+.+.++.++++|.++..+|+.....+.
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~ 148 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRDGGKMK 148 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 55689999999999999999999998644444
No 285
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=46.96 E-value=25 Score=27.27 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.+.+.++++.++++|.++..+|+.....+..
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~ 118 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDSPLAK 118 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 456888999999999999999999986554443
No 286
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=46.87 E-value=11 Score=36.84 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=13.9
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
-++++||+||||+...+
T Consensus 507 ~rll~LDyDGTL~~~~~ 523 (797)
T PLN03063 507 NRLLILGFYGTLTEPRN 523 (797)
T ss_pred CeEEEEecCccccCCCC
Confidence 47889999999997643
No 287
>PLN03017 trehalose-phosphatase
Probab=46.79 E-value=33 Score=30.33 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=30.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIV 210 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l 210 (241)
..+.+++.+.|++|. +|++++|+|+.....+..++
T Consensus 132 a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 132 AFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred ccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 367899999999999 67999999999988777764
No 288
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=46.11 E-value=30 Score=28.41 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCcHH
Q 026252 180 GVAKLIDQALEKGVKVAVCSTSNEK 204 (241)
Q Consensus 180 gv~elL~~Lk~~gi~v~ivTn~~~~ 204 (241)
.+.|+|..||++ +.+++||.+...
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmqQ 210 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHHH
Confidence 578999999965 999999999744
No 289
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=45.57 E-value=12 Score=37.23 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.9
Q ss_pred CCcEEEEecCcccccCc
Q 026252 76 LPSALLFDCDGVLVDTE 92 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~ 92 (241)
.-++++||+||||++..
T Consensus 590 ~~RLlfLDyDGTLap~~ 606 (934)
T PLN03064 590 NNRLLILGFNATLTEPV 606 (934)
T ss_pred cceEEEEecCceeccCC
Confidence 34788999999999854
No 290
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=44.91 E-value=62 Score=22.77 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhc
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~ 214 (241)
+...++.++++++|+.+..+|....+.+...++..+
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 445577778888899999999998888888888775
No 291
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=43.88 E-value=1.9e+02 Score=24.19 Aligned_cols=19 Identities=5% Similarity=-0.134 Sum_probs=13.8
Q ss_pred hcCCCCcccceEEecCCCC
Q 026252 213 LLGPERAEKIQIFAGDVVP 231 (241)
Q Consensus 213 l~~~~~f~~~~iv~s~~~~ 231 (241)
+++..+|+-+.|+++-++|
T Consensus 196 y~L~~~f~ieNIYSa~kvG 214 (274)
T TIGR01658 196 FRLDTIFRIENVYSSIKVG 214 (274)
T ss_pred hccCCccccccccchhhcc
Confidence 3667788766788887655
No 292
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=43.68 E-value=29 Score=29.39 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCCCChhHHHHHHHHHHCCC-eEEEEeCCc
Q 026252 174 LLPLRPGVAKLIDQALEKGV-KVAVCSTSN 202 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~~gi-~v~ivTn~~ 202 (241)
++.+.++..++++.+++.|+ .+.+.||+.
T Consensus 66 EPll~~~l~~iv~~l~~~g~~~v~i~TNG~ 95 (302)
T TIGR02668 66 EPLLRKDLIEIIRRIKDYGIKDVSMTTNGI 95 (302)
T ss_pred ccccccCHHHHHHHHHhCCCceEEEEcCch
Confidence 46678889999999999888 899999985
No 293
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=43.23 E-value=35 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
|+-.+-|+.|.+.|++|.|.+-.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 45678899999999999998643
No 294
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=43.06 E-value=34 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~ 207 (241)
.-.+.+.+.++.++++|.++..+|+.....+.
T Consensus 122 G~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~ 153 (192)
T PRK00414 122 GNSGNIIKAIEAARAKGMKVITLTGKDGGKMA 153 (192)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 45689999999999999999999998644433
No 295
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=42.92 E-value=1.1e+02 Score=28.04 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCC--cHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCCCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPLCC 240 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~--~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~~f 240 (241)
+.....|+.+.+.+.|-+|.++|+. +.+.++.+|...|.. |..+-++.|.+....|-..+.|
T Consensus 100 pn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d--~~nipiY~S~e~rl~KnSg~LF 163 (635)
T COG5610 100 PNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPD--FNNIPIYMSSEFRLKKNSGNLF 163 (635)
T ss_pred ccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCC--ccCceeeecceeehhcccchHH
Confidence 3445679999999999999999999 777888888877543 2222478888777777655443
No 296
>PLN02580 trehalose-phosphatase
Probab=41.65 E-value=49 Score=29.45 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=31.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~ 211 (241)
..+.|++.+.|+.|.+. .+++|||+-....++.++.
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVG 175 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhC
Confidence 57789999999999988 6899999999888887775
No 297
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=41.48 E-value=51 Score=27.19 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
.+++++|...++.-+..|++++|-|.+....+..+...
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~ 159 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGY 159 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcc
Confidence 48999999999999999999999999997777766554
No 298
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.19 E-value=43 Score=22.52 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
....++++.|+++|+++..+|++.
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCH
Confidence 347789999999999998888774
No 299
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.83 E-value=1.1e+02 Score=23.63 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHCCCe-EEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 178 RPGVAKLIDQALEKGVK-VAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 178 ~pgv~elL~~Lk~~gi~-v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
.||-.+-.++|+.+|+. |+++|-++.......-+.++-..+.
T Consensus 64 vPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V 106 (171)
T KOG0541|consen 64 VPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHV 106 (171)
T ss_pred CchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceE
Confidence 49999999999999998 7778888888888888777544443
No 300
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=39.92 E-value=34 Score=28.52 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
.-+|+..++++.|+++|+++++..+..
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 467999999999999999999988874
No 301
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=39.91 E-value=59 Score=24.73 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhc
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~ 214 (241)
.++.++=+.|++.|+++.++.+.....+..+++..+
T Consensus 53 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 88 (165)
T PF00875_consen 53 ESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYG 88 (165)
T ss_dssp HHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcC
Confidence 445566667777788888888777777777777664
No 302
>PRK13938 phosphoheptose isomerase; Provisional
Probab=39.83 E-value=40 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~ 207 (241)
.--+.+.+.++.++++|.+++.+|++....+.
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La 155 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESGGQLA 155 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCChhh
Confidence 45688999999999999999999998654433
No 303
>PLN02151 trehalose-phosphatase
Probab=39.26 E-value=53 Score=28.92 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~ 211 (241)
..+.|++.+.|+.|.+ +++++|+|+-....+...+.
T Consensus 119 A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 119 AFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred ccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 4788999999999985 58999999998888877664
No 304
>PLN02423 phosphomannomutase
Probab=39.12 E-value=58 Score=26.80 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~ 211 (241)
++.|.+.+.|++|+++ +.++++|+.....+...+.
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 5678999999999987 9999999986554444433
No 305
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=38.81 E-value=1.1e+02 Score=21.47 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
+....|++.|+++++|+-++.+.++...+. ..|+.+ +++..
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~----~~~p~~-ly~D~ 44 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCEL----TGFPFP-LYVDP 44 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhc----cCCCCc-EEEeC
Confidence 446788889999999999987567777654 344443 55543
No 306
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=38.73 E-value=20 Score=30.09 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.4
Q ss_pred CCCcEEEEecCcccccCc
Q 026252 75 VLPSALLFDCDGVLVDTE 92 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~ 92 (241)
.+.|+++.|+|+||+.+.
T Consensus 87 ~~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 87 VGRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCCceEEEeCCCcccccc
Confidence 456999999999998776
No 307
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=38.58 E-value=22 Score=29.93 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.5
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
.++++||+||||.+...
T Consensus 158 ~~~~~~D~dgtl~~~~~ 174 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGG 174 (300)
T ss_pred CCEEEEECCCcCcCCCC
Confidence 57999999999998654
No 308
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=37.89 E-value=67 Score=21.64 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
-++.-|..+.++.+++...+++++.++..+.....+..+
T Consensus 10 gkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~ 48 (82)
T PRK13602 10 KSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEAL 48 (82)
T ss_pred CCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHH
Confidence 367899999999999888888888888656666666544
No 309
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=37.64 E-value=43 Score=27.09 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCCCChhHHHHHHHHHHCCCeEEEEeCCcHH
Q 026252 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~ 204 (241)
++-..++..++|+.|++.|+++.+=||++..
T Consensus 81 EP~~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 81 EPLLQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred cCCCcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 3444569999999999999999999998644
No 310
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=37.12 E-value=22 Score=23.70 Aligned_cols=17 Identities=41% Similarity=0.817 Sum_probs=14.3
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
.-.|+++-|||.||++.
T Consensus 38 ~~~l~L~eDGT~VddEe 54 (74)
T smart00266 38 PVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CcEEEEecCCcEEccHH
Confidence 35688999999999885
No 311
>PRK13936 phosphoheptose isomerase; Provisional
Probab=36.81 E-value=46 Score=26.42 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=26.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.+.+.++++.++++|.++..+|+.....+..
T Consensus 122 G~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 122 GNSANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 446889999999999999999999976554444
No 312
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=36.32 E-value=23 Score=23.84 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.4
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
.-.|+.+-|||.||++.
T Consensus 40 ~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 40 LVTLVLEEDGTVVDTEE 56 (78)
T ss_pred CcEEEEeCCCCEEccHH
Confidence 45688999999999885
No 313
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=35.81 E-value=61 Score=28.16 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=32.4
Q ss_pred CCCChhHHHHHHHHHHC----CCeEEEEeCC----cHHHHHHHHHHhcCC
Q 026252 175 LPLRPGVAKLIDQALEK----GVKVAVCSTS----NEKAVTAIVSFLLGP 216 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~----gi~v~ivTn~----~~~~~~~~l~~l~~~ 216 (241)
-.+.||+.+.++.|.++ .++...+||+ .+..++.+-+.+|+.
T Consensus 50 ~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~ 99 (389)
T KOG1618|consen 50 HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE 99 (389)
T ss_pred CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc
Confidence 46789999999999998 8999999999 344455555555543
No 314
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=35.53 E-value=24 Score=23.92 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.5
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
.-.|+.+-|||.||++.
T Consensus 39 ~~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 39 VLTLVLEEDGTAVDSED 55 (81)
T ss_pred ceEEEEecCCCEEccHH
Confidence 35788999999999885
No 315
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=35.41 E-value=90 Score=21.82 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=31.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
-.+.-|..+.++.+++...+++++++...+.....+..+
T Consensus 15 gkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~ 53 (99)
T PRK01018 15 GKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYY 53 (99)
T ss_pred CCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHH
Confidence 478899999999999888999999888666666666544
No 316
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=35.03 E-value=1e+02 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCCCChhHHHHHHHHHH-CCC-eEEEEeCCc
Q 026252 174 LLPLRPGVAKLIDQALE-KGV-KVAVCSTSN 202 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~-~gi-~v~ivTn~~ 202 (241)
++.+.++..++++.+++ .|+ .+.+.||+.
T Consensus 69 EPll~~~l~~li~~i~~~~gi~~v~itTNG~ 99 (334)
T TIGR02666 69 EPLLRKDLVELVARLAALPGIEDIALTTNGL 99 (334)
T ss_pred cccccCCHHHHHHHHHhcCCCCeEEEEeCch
Confidence 46678899999999887 578 899999985
No 317
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=34.90 E-value=49 Score=28.73 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI 209 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~ 209 (241)
.--+++.+.++.+|++|.++..+||.....+...
T Consensus 103 GeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ 136 (340)
T PRK11382 103 GKTEEVIKALELGRACGALTAAFTKRADSPITSA 136 (340)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHh
Confidence 4458899999999999999999999865544433
No 318
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.77 E-value=96 Score=26.75 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=24.3
Q ss_pred cCCCCChhHHHHHHHHHHCCC--eEEEEeCCc
Q 026252 173 KLLPLRPGVAKLIDQALEKGV--KVAVCSTSN 202 (241)
Q Consensus 173 ~~~~l~pgv~elL~~Lk~~gi--~v~ivTn~~ 202 (241)
+++-++++..++++.+++.+. .+.+.||+.
T Consensus 70 GEPllr~dl~~li~~i~~~~~l~~i~itTNG~ 101 (329)
T PRK13361 70 GEPLVRRGCDQLVARLGKLPGLEELSLTTNGS 101 (329)
T ss_pred cCCCccccHHHHHHHHHhCCCCceEEEEeChh
Confidence 346778899999999988754 688999985
No 319
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.54 E-value=48 Score=26.46 Aligned_cols=34 Identities=6% Similarity=0.199 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI 209 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~ 209 (241)
.--+.+.+.++.+|++|.++..+|+.....+..+
T Consensus 120 G~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l 153 (196)
T PRK10886 120 GNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGL 153 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhc
Confidence 3467899999999999999999999875544443
No 320
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=34.50 E-value=73 Score=24.52 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 180 gv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
.+.++++..++.|+++.|+|+++ .+...++..
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt--~ar~~ik~~ 105 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGT--LARKIIKEY 105 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChH--HHHHHHHHh
Confidence 46788888889999999999996 666666655
No 321
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.11 E-value=48 Score=28.11 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
..+|+..+++++|+++|+++.+..+.
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 56899999999999999999887754
No 322
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=34.04 E-value=1.4e+02 Score=21.65 Aligned_cols=57 Identities=2% Similarity=-0.056 Sum_probs=39.0
Q ss_pred hhHHHHHHH-HHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecCCCCCCCCCCC
Q 026252 179 PGVAKLIDQ-ALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPL 238 (241)
Q Consensus 179 pgv~elL~~-Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~~~~~~KP~p~ 238 (241)
+.+.+.+++ |.+.++-+.++|....+.+...++... ...+. .+..++--+.+.|..+
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~Pa-IieIP~k~~~y~~~~d 103 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPA-VLEIPSKDHPYDASKD 103 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCE-EEEECCCCCCCCCccc
Confidence 556777778 777899999999998888888888764 45553 2333442255555543
No 323
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=33.98 E-value=46 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCcH
Q 026252 182 AKLIDQALEKGVKVAVCSTSNE 203 (241)
Q Consensus 182 ~elL~~Lk~~gi~v~ivTn~~~ 203 (241)
.++++.|+++|++++++=...+
T Consensus 20 e~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 20 EKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred HHHHHHHHhCCcEEEEEEecCC
Confidence 4788999999999999866543
No 324
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.62 E-value=66 Score=21.92 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHC--CCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 180 GVAKLIDQALEK--GVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 180 gv~elL~~Lk~~--gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
...++++.|++. +.++.++|+..........-..|...|+.
T Consensus 57 ~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~ 99 (112)
T PF00072_consen 57 DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLS 99 (112)
T ss_dssp BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEE
T ss_pred cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 344777888775 48899999775544444444566655553
No 325
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=33.51 E-value=36 Score=30.19 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
+...+.+..-|-.|-++|++|||||...
T Consensus 165 l~~d~pvi~~ii~LL~~gv~VgIVTAAG 192 (408)
T PF06437_consen 165 LEPDNPVIPRIIKLLRRGVKVGIVTAAG 192 (408)
T ss_pred CCCCchHHHHHHHHHhcCCeEEEEeCCC
Confidence 3345667777778888999999999883
No 326
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.93 E-value=98 Score=22.33 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHCCC-eE-EEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 177 LRPGVAKLIDQALEKGV-KV-AVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi-~v-~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
..+.+.++++.|+++|. .+ .++-+.........++.+|+..+|+
T Consensus 63 ~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 63 HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC
Confidence 44667888999998855 22 2333333333445566677666554
No 327
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=32.89 E-value=87 Score=21.57 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
++.+.++++|..+.++.-+ +.+...++..|+...++
T Consensus 66 ~~~~~~~~~~~~~~l~~~~--~~~~~~l~~~~l~~~~~ 101 (108)
T TIGR00377 66 GRYKQVRRVGGQLVLVSVS--PRVARLLDITGLLRIIP 101 (108)
T ss_pred HHHHHHHhcCCEEEEEeCC--HHHHHHHHHhChhheec
Confidence 5556778888887666433 57888888888887775
No 328
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.89 E-value=56 Score=27.25 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.+.+.++++.++++|.++.++|++....+..
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPNALQQ 218 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHH
Confidence 556888999999999999999999986555444
No 329
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=32.77 E-value=60 Score=21.22 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred cEEEEecCcccccCccchHHHHHHHHHHhhc
Q 026252 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKE 108 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g 108 (241)
+-|+.|++|+-.-+... ..+++..+..++|
T Consensus 18 ~~V~lDF~gv~~~~ssF-l~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSF-LNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHH-HHHHHHHHHHHcC
Confidence 44999999996555553 6667777777765
No 330
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=32.75 E-value=1.2e+02 Score=19.68 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
+.-+.++.++.+.|++...-+.=+++-+.+..+++++.+
T Consensus 6 p~~~~D~~~i~~~l~~g~~Vivnl~~l~~~~~~Ri~Dfl 44 (73)
T PF04472_consen 6 PKSFEDAREIVDALREGKIVIVNLENLDDEEAQRILDFL 44 (73)
T ss_dssp -SSGGGHHHHHHHHHTT--EEEE-TTS-HHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH
Confidence 466799999999999887667777888888888888876
No 331
>PRK15482 transcriptional regulator MurR; Provisional
Probab=32.72 E-value=55 Score=27.48 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=28.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
..-.+.+.++++.++++|.+++++|+.....+..
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~ 225 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADSPLRR 225 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH
Confidence 3567899999999999999999999986554443
No 332
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=32.64 E-value=56 Score=27.02 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
-.--++.+++.+.-..|+.+++|||+.
T Consensus 81 ~~akd~qq~~~Yav~~Gv~~~iVtnGr 107 (284)
T COG2810 81 NPAKDVQQLAKYAVDKGVEVGIVTNGR 107 (284)
T ss_pred CchHHHHHHHHHHHhcCcEEEEEeCCe
Confidence 344677899999999999999999985
No 333
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=32.37 E-value=62 Score=27.23 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.+.+.++++.++++|.++.++|++....+..
T Consensus 198 G~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~ 230 (292)
T PRK11337 198 GRTSDVIEAVELAKKNGAKIICITNSYHSPIAK 230 (292)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 456889999999999999999999987554444
No 334
>PRK14129 heat shock protein HspQ; Provisional
Probab=32.19 E-value=42 Score=23.85 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=15.1
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
..+++||||+|-+--.+++
T Consensus 17 ~~yrGVV~DVDP~fs~~e~ 35 (105)
T PRK14129 17 LGYLGVVVDIDPEYSLEEP 35 (105)
T ss_pred cCCCeEEEeeCCCcCCCch
Confidence 5688999999988776665
No 335
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=32.17 E-value=94 Score=21.43 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
++.+.++++|.++.++. - ...+...++..|+.+.++
T Consensus 62 ~~~~~~~~~g~~l~l~~-~-~~~v~~~l~~~gl~~~~~ 97 (106)
T TIGR02886 62 GRYKKIKNEGGEVIVCN-V-SPAVKRLFELSGLFKIIR 97 (106)
T ss_pred HHHHHHHHcCCEEEEEe-C-CHHHHHHHHHhCCceEEE
Confidence 56677888998887663 3 367888888888777663
No 336
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=31.97 E-value=1.3e+02 Score=21.93 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=6.4
Q ss_pred HHHCCCeEEEEeCC
Q 026252 188 ALEKGVKVAVCSTS 201 (241)
Q Consensus 188 Lk~~gi~v~ivTn~ 201 (241)
+++.++++-++++.
T Consensus 80 ~~~~~~~~~~~~D~ 93 (149)
T cd03018 80 AEENGLTFPLLSDF 93 (149)
T ss_pred HHhcCCCceEecCC
Confidence 33344555555443
No 337
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=31.96 E-value=64 Score=21.70 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=26.2
Q ss_pred HhcCCCCChhHHHHHHHHHHCCCeEEEEeCCcHH
Q 026252 171 EKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (241)
Q Consensus 171 ~~~~~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~ 204 (241)
.++.+..||.|-..|+.|.++|+-+.+-+.+.++
T Consensus 40 sTgKpkiY~~Vc~yLe~L~~eg~l~~i~~~~~~d 73 (78)
T PF13034_consen 40 STGKPKIYPYVCNYLEYLVKEGKLSFIENDGTRD 73 (78)
T ss_pred cCCCceeHHHHHHHHHHHHHCCeEEEEecCcchh
Confidence 4456899999999999999998766555554444
No 338
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=31.91 E-value=98 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 182 ~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
.++.+.++++|+++.++ +..+.+...+...|+...+
T Consensus 70 ~~~~~~~~~~g~~~~l~--~~~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 70 VDIIKELRRRGVQLVLV--GLNPDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHTTCEEEEE--SHHHHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHCCCEEEEE--ECCHHHHHHHHHcCCChhc
Confidence 36777888999999776 4456788888888777666
No 339
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=31.69 E-value=30 Score=23.31 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=14.2
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
.-.|+++-|||.||++.
T Consensus 40 ~~~lvL~eDGTeVddEe 56 (78)
T cd01615 40 PVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CeEEEEeCCCcEEccHH
Confidence 34588999999999885
No 340
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=31.61 E-value=36 Score=30.37 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh---cCCCCcc
Q 026252 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAE 220 (241)
Q Consensus 180 gv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l---~~~~~f~ 220 (241)
....+|..+++.|-+..++||++-.........+ ++..+|+
T Consensus 202 ~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd 245 (424)
T KOG2469|consen 202 TIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFD 245 (424)
T ss_pred ccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEE
Confidence 3445899999999999999999888888777765 4567787
No 341
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=31.51 E-value=66 Score=20.26 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCc
Q 026252 181 VAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~ 202 (241)
..++++.++++|+....+|+-+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 5689999999999999999885
No 342
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=31.49 E-value=1.4e+02 Score=21.43 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=13.3
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
++.+++++.|+.+..+|..+...+....+.
T Consensus 47 ~~~~~~~~~~~~~i~is~d~~~~~~~~~~~ 76 (140)
T cd02971 47 DLAEEFAKGGAEVLGVSVDSPFSHKAWAEK 76 (140)
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 333444444555555554444444444433
No 343
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.47 E-value=29 Score=23.46 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.9
Q ss_pred cEEEEecCcccccCcc
Q 026252 78 SALLFDCDGVLVDTEK 93 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~ 93 (241)
-.|+++-|||.||++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 5678999999999885
No 344
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=31.15 E-value=61 Score=27.64 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.+.+.+.++.+|++|.++..+|+.....+..
T Consensus 100 G~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~ 132 (321)
T PRK11543 100 GGAKELDLIIPRLEDKSIALLAMTGKPTSPLGL 132 (321)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEECCCCChhHH
Confidence 556889999999999999999999987554433
No 345
>PRK02947 hypothetical protein; Provisional
Probab=31.08 E-value=59 Score=26.86 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
.-.+.+.++++.++++|.++..+|+..
T Consensus 117 G~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 117 GRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 456889999999999999999999986
No 346
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=30.97 E-value=17 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHCC--CeEEEEeCCcHHHHH
Q 026252 179 PGVAKLIDQALEKG--VKVAVCSTSNEKAVT 207 (241)
Q Consensus 179 pgv~elL~~Lk~~g--i~v~ivTn~~~~~~~ 207 (241)
+...++++.+++.+ +.+.+.||+....-.
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~~~~~ 95 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTLPTEE 95 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STTHHHH
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCeecccc
Confidence 57889999999998 999999999755333
No 347
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.97 E-value=27 Score=31.99 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=0.0
Q ss_pred cEEEEecCcccc
Q 026252 78 SALLFDCDGVLV 89 (241)
Q Consensus 78 k~ViFD~DGTLv 89 (241)
||+++|+||||.
T Consensus 223 K~LVLDLDNTLW 234 (574)
T COG3882 223 KALVLDLDNTLW 234 (574)
T ss_pred ceEEEecCCccc
No 348
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=30.92 E-value=1.2e+02 Score=22.73 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=21.8
Q ss_pred CCCChhHHHHHHHHHHC--CCeEEEEeCCcH
Q 026252 175 LPLRPGVAKLIDQALEK--GVKVAVCSTSNE 203 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~--gi~v~ivTn~~~ 203 (241)
+...+...++++.+++. ++.+.+.||...
T Consensus 55 p~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~ 85 (204)
T cd01335 55 PLLYPELAELLRRLKKELPGFEISIETNGTL 85 (204)
T ss_pred CCccHhHHHHHHHHHhhCCCceEEEEcCccc
Confidence 34455777888888887 888888888853
No 349
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=30.61 E-value=71 Score=26.62 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTA 208 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~ 208 (241)
.-.|.+.+.++.++++|.++..+|++....+..
T Consensus 129 G~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~ 161 (257)
T cd05007 129 GRTPYVLGALRYARARGALTIGIACNPGSPLLQ 161 (257)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEECCCCChhHH
Confidence 346889999999999999999999987555444
No 350
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=43 Score=23.79 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=17.3
Q ss_pred CCCCcEEEEecCcccccCcc
Q 026252 74 SVLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~ 93 (241)
...+++|+||+|-.-..+++
T Consensus 25 lfpfrGVV~DvDPeyantee 44 (116)
T COG3785 25 LFPFRGVVFDVDPEYANTEE 44 (116)
T ss_pred hcccceEEEecCcccccCcc
Confidence 36789999999999988887
No 351
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=29.98 E-value=1.5e+02 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=9.9
Q ss_pred HHHHHHHHCCCeEEEEeCCc
Q 026252 183 KLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~ 202 (241)
++-+.+++.|+.+-++++..
T Consensus 70 ~~~~~~~~~~~~~~~l~D~~ 89 (140)
T cd03017 70 SHAKFAEKYGLPFPLLSDPD 89 (140)
T ss_pred HHHHHHHHhCCCceEEECCc
Confidence 33344444455555555544
No 352
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=29.97 E-value=52 Score=23.24 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcH
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNE 203 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~ 203 (241)
.++.++..+++..+.+.+++||+..
T Consensus 68 ~~~~Q~~~Y~~~~~~~~~i~tNG~~ 92 (112)
T PF13588_consen 68 KAVEQLKSYARALGAPYGILTNGKE 92 (112)
T ss_dssp -SHHHHHHHHHHHT-SEEEEE-SS-
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCe
Confidence 4677777788777999999999963
No 353
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=29.90 E-value=1.2e+02 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=23.7
Q ss_pred cCCCCChhHHHHHHHHHHC-CCe-EEEEeCCc
Q 026252 173 KLLPLRPGVAKLIDQALEK-GVK-VAVCSTSN 202 (241)
Q Consensus 173 ~~~~l~pgv~elL~~Lk~~-gi~-v~ivTn~~ 202 (241)
+++.++++..++++.+++. |+. +.+.||+.
T Consensus 115 GEPllr~dl~eli~~l~~~~gi~~i~itTNG~ 146 (373)
T PLN02951 115 GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGI 146 (373)
T ss_pred CCCcchhhHHHHHHHHHhcCCCceEEEeeCcc
Confidence 3467788888999999886 775 78888884
No 354
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=29.69 E-value=62 Score=27.84 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=22.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCST 200 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn 200 (241)
...+|+..+++++|+++|+++.+..+
T Consensus 62 ~~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 62 PERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 35679999999999999999887653
No 355
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=29.49 E-value=63 Score=27.82 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
...+|+..+++++|+++|+++.+.-+.
T Consensus 67 ~~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 67 PERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 356799999999999999999876655
No 356
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.49 E-value=62 Score=27.83 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
...+|+..++++.|+++|+++.+..+.
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~P 92 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITEP 92 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEcC
Confidence 467899999999999999999887764
No 357
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.34 E-value=66 Score=27.66 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
...+|+..+++++|+++|+++.+.-+.
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~P 95 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIKP 95 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 367899999999999999999875554
No 358
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=29.33 E-value=1.2e+02 Score=20.13 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+.++++.|+++ .+. .+++++....-.+|..+|+.
T Consensus 28 a~~If~~L~k~-~~~-~l~~~~~~~FGriL~~~gi~ 61 (73)
T PF12990_consen 28 AAEIFERLQKK-SPA-ALRGSNPNHFGRILQKLGIP 61 (73)
T ss_pred HHHHHHHHHHh-Ccc-ccccCCHHHHHHHHHHcCCC
Confidence 56899999887 455 47888888999999988764
No 359
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=29.32 E-value=55 Score=23.79 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHCCC-eEEEEeCCc
Q 026252 178 RPGVAKLIDQALEKGV-KVAVCSTSN 202 (241)
Q Consensus 178 ~pgv~elL~~Lk~~gi-~v~ivTn~~ 202 (241)
.+.+.++++.+++++. ++.++||+.
T Consensus 69 ~~~l~~i~~~~k~~~~~~~~~~tng~ 94 (139)
T PF13353_consen 69 YDELLEILKYIKEKFPKKIIILTNGY 94 (139)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEETT-
T ss_pred HhHHHHHHHHHHHhCCCCeEEEECCC
Confidence 5888999999999988 799999994
No 360
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=29.15 E-value=93 Score=22.82 Aligned_cols=28 Identities=46% Similarity=0.673 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCc
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~ 202 (241)
.+.+|-..++++.++++|++++++.-+.
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 4566889999999999999999998764
No 361
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=28.86 E-value=1.3e+02 Score=24.67 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=31.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC--cHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~--~~~~~~~~l~~l 213 (241)
.+..+...++|+++|+.|++.||+=|. +.+.++.+|..+
T Consensus 92 ~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~v 132 (220)
T COG0036 92 AEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDV 132 (220)
T ss_pred eccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhC
Confidence 456678899999999999999999987 555666666654
No 362
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=28.85 E-value=1e+02 Score=16.61 Aligned_cols=23 Identities=4% Similarity=0.235 Sum_probs=16.3
Q ss_pred HCCCeEEEEeCCcHHHHHHHHHH
Q 026252 190 EKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 190 ~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
+.++.|.|-||+....+...++.
T Consensus 2 ~g~LqI~ISTnG~sP~la~~iR~ 24 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLARLIRK 24 (30)
T ss_dssp -TTEEEEEEESSS-HHHHHHHHH
T ss_pred CCCeEEEEECCCCChHHHHHHHH
Confidence 44678999999987777766654
No 363
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=28.69 E-value=74 Score=23.00 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=21.5
Q ss_pred CCChhHHHHHHHHHHCCCe-EEEEeC
Q 026252 176 PLRPGVAKLIDQALEKGVK-VAVCST 200 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~-v~ivTn 200 (241)
-.|..+.++++.+++.|+. ++++|+
T Consensus 96 ~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 96 VDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 5668888999999999995 888886
No 364
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=28.65 E-value=1e+02 Score=30.63 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHH-HHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 176 PLRPGVAKLIDQA-LEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 176 ~l~pgv~elL~~L-k~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
.+.|++.++|++| ++.|..++|+|+.....++..+..
T Consensus 616 ~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 616 SPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 5567999999998 667999999999998888877753
No 365
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.62 E-value=1.2e+02 Score=22.45 Aligned_cols=42 Identities=12% Similarity=-0.130 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHCCC-eEEEEeC-CcHHHHHHHHHHhcCCCCcc
Q 026252 179 PGVAKLIDQALEKGV-KVAVCST-SNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 179 pgv~elL~~Lk~~gi-~v~ivTn-~~~~~~~~~l~~l~~~~~f~ 220 (241)
+.+.++++.|+++|. .+.++-+ .........++.+|+..+|.
T Consensus 68 ~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEEC
Confidence 456677778888764 2323333 23333455577777766654
No 366
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=28.53 E-value=1.4e+02 Score=20.63 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCC-Cc
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RA 219 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~-~f 219 (241)
++.+.++++|.++.++--. ..+...++..|+.. .|
T Consensus 64 ~~~~~~~~~g~~l~l~g~~--~~v~~~l~~~gl~~~~~ 99 (109)
T cd07041 64 RLARALRLLGARTILTGIR--PEVAQTLVELGIDLSGI 99 (109)
T ss_pred HHHHHHHHcCCeEEEEeCC--HHHHHHHHHhCCChhhc
Confidence 6677888889888776333 57888888888766 44
No 367
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.44 E-value=68 Score=27.39 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
.-+|+..+++++|+++|+++++..+.
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 46789999999999999999887665
No 368
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=28.23 E-value=1.1e+02 Score=21.16 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhc
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~ 214 (241)
.++++|.++|++++.-+....+.....++.+|
T Consensus 43 ~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg 74 (89)
T PF08444_consen 43 HLAQYLHKLGFPFYGHVDEDNEASQRLSKSLG 74 (89)
T ss_pred HHHHHHHHCCCCeEeehHhccHHHHHHHHHCC
Confidence 56678899999999988887778888888774
No 369
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=27.77 E-value=23 Score=23.50 Aligned_cols=8 Identities=63% Similarity=1.074 Sum_probs=7.9
Q ss_pred EecCcccc
Q 026252 82 FDCDGVLV 89 (241)
Q Consensus 82 FD~DGTLv 89 (241)
|||+|.|+
T Consensus 5 Fdf~G~l~ 12 (73)
T PF08620_consen 5 FDFDGNLL 12 (73)
T ss_pred ccCCCCEe
Confidence 99999999
No 370
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.56 E-value=71 Score=27.82 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
-+|+..+++++|+++|+++.+..+.
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEecC
Confidence 5789999999999999999775554
No 371
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=27.24 E-value=70 Score=23.67 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=20.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCST 200 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn 200 (241)
.-.|-+.+.++..|++|.+++.+|+
T Consensus 114 G~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 114 GNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp S-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4568899999999999999999885
No 372
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=27.04 E-value=1.3e+02 Score=21.44 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=31.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
-.+.-|..+.++.|++...+++++.+...+.....++..
T Consensus 24 GKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~ 62 (108)
T PTZ00106 24 GKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYY 62 (108)
T ss_pred CCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHH
Confidence 478899999999999888888888888666666665543
No 373
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=26.99 E-value=1.8e+02 Score=20.85 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcC
Q 026252 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~ 215 (241)
+.++++..++.|.++.++|+.. +.-..+++.+|+
T Consensus 71 i~~l~~~a~~~g~~v~iis~~~-e~G~~L~~~~gG 104 (113)
T PF03465_consen 71 IEELIELAEQSGAKVEIISSEH-EEGEQLLKGFGG 104 (113)
T ss_dssp HHHHHHHHHHTTSEEEEE-TTS-HHHHHHHHCTTT
T ss_pred HHHHHHHHHHcCCEEEEEcCCC-ccHHHHHhcCCc
Confidence 6788999999999999999987 444555576654
No 374
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=26.86 E-value=39 Score=22.78 Aligned_cols=16 Identities=56% Similarity=0.731 Sum_probs=13.8
Q ss_pred cEEEEecCcccccCcc
Q 026252 78 SALLFDCDGVLVDTEK 93 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~ 93 (241)
-.|+.+-|||.|+++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4588999999999885
No 375
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=26.82 E-value=1.5e+02 Score=19.97 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
.+.-|..+.++.+++...++.++.+...+.+...+..+
T Consensus 8 Klv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~ 45 (82)
T PRK13601 8 KRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKEL 45 (82)
T ss_pred cEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHH
Confidence 56789999999999888888888777556666665544
No 376
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=26.81 E-value=1.5e+02 Score=19.70 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
++.+.++++|..+.+. +-+ +.+...++..|+..++.
T Consensus 61 ~l~~~~~~~g~~v~i~-~~~-~~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 61 GAYKRARAAGGRLVLV-NVS-PAVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHcCCeEEEE-cCC-HHHHHHHHHhCcceeee
Confidence 5667788888776554 444 57888888888776664
No 377
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=26.77 E-value=75 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCST 200 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn 200 (241)
...+|+..++++.|+++|+++++..+
T Consensus 62 ~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 62 PDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEec
Confidence 35779999999999999999988765
No 378
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=26.69 E-value=79 Score=26.03 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~ 205 (241)
.-.+.+.+.++.+|++|.++..+|+.....
T Consensus 58 G~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 87 (268)
T TIGR00393 58 GESLELLNLIPHLKRLSHKIIAFTGSPNSS 87 (268)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCCc
Confidence 456889999999999999999999986554
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=26.69 E-value=1.5e+02 Score=22.89 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 182 ~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
.++++.+++.||++..+|+.....++.+.+.+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l 33 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELL 33 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence 36677788888888888887767777777665
No 380
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=26.61 E-value=1.5e+02 Score=21.43 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
...+.+.+.++.+.++|+++.+-|.+-.+.....++.+
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHH
Confidence 44577889999999999999998888766666666665
No 381
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.59 E-value=68 Score=25.09 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEe
Q 026252 179 PGVAKLIDQALEKGVKVAVCS 199 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivT 199 (241)
+++.++.++|.++|+++++||
T Consensus 95 ~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 95 EEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEE
Confidence 478899999999999999999
No 382
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=26.07 E-value=1.7e+02 Score=23.91 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCCChhHH-HHHHHHHHCCCeEEEEeCCcHH-----HHHHHHHHhcCCCCcccceEEecCC
Q 026252 175 LPLRPGVA-KLIDQALEKGVKVAVCSTSNEK-----AVTAIVSFLLGPERAEKIQIFAGDV 229 (241)
Q Consensus 175 ~~l~pgv~-elL~~Lk~~gi~v~ivTn~~~~-----~~~~~l~~l~~~~~f~~~~iv~s~~ 229 (241)
..++|+.. ++.+.+++.|++..|+-.-... .++..++.+|+.-.|+ ..+|+=+
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P--~~~CsL~ 116 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFP--KPFCSLE 116 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecC--ccccccC
Confidence 46778877 8888888899999888877666 7888888887666666 4566544
No 383
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=25.97 E-value=81 Score=27.00 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~ 206 (241)
.-.+.+.++++.++++|.++..+|++....+
T Consensus 105 G~t~~~~~~~~~ak~~g~~vi~iT~~~~s~l 135 (326)
T PRK10892 105 GESSEILALIPVLKRLHVPLICITGRPESSM 135 (326)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCcc
Confidence 4568899999999999999999999875443
No 384
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=25.79 E-value=45 Score=22.45 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=13.8
Q ss_pred CcEEEEecCcccccCcc
Q 026252 77 PSALLFDCDGVLVDTEK 93 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~~ 93 (241)
.-.|+++=|||+||.+.
T Consensus 40 ~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 40 PVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp TCEEEETTTTCBESSCH
T ss_pred CcEEEEeCCCcEEccHH
Confidence 34578899999999885
No 385
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=25.43 E-value=83 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
...+|+..++++.|+++|+++.+..+.
T Consensus 60 ~~~FPdp~~mi~~L~~~G~k~~~~~~P 86 (339)
T cd06603 60 KKKFPDPEKMQEKLASKGRKLVTIVDP 86 (339)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEecC
Confidence 467899999999999999999887663
No 386
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=25.43 E-value=69 Score=24.32 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
|...|+|+..++.|++++.|+-+
T Consensus 91 ~sl~eLl~~a~e~GVk~~AC~ms 113 (148)
T PF13686_consen 91 PSLEELLEMAKELGVKFYACSMS 113 (148)
T ss_dssp --HHHHHHHHHHCCEEEEEEHHH
T ss_pred CCHHHHHHHHHHCCCEEEEehhh
Confidence 67889999999999999999654
No 387
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.18 E-value=95 Score=26.55 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~ 206 (241)
.-.|.+.+.++.++++|.++..+|++....+
T Consensus 142 G~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~L 172 (299)
T PRK05441 142 GRTPYVIGALEYARERGALTIGISCNPGSPL 172 (299)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 3468899999999999999999999865543
No 388
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=24.97 E-value=98 Score=26.38 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHCCCeEEEEeCCcHHHH
Q 026252 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~ 206 (241)
-.|.+.+.++.++++|.++..+|++....+
T Consensus 138 ~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~L 167 (291)
T TIGR00274 138 RTPYVIAGLQYARSLGALTISIACNPKSAA 167 (291)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 357899999999999999999999865444
No 389
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=24.82 E-value=1.2e+02 Score=25.56 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=30.7
Q ss_pred CCCChhHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVS 211 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~-gi~v~ivTn~~~~~~~~~l~ 211 (241)
..+.+++.++|+.|..+ ...++|+|+-+...++..+.
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 57889999999999988 33599999998777777665
No 390
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=24.64 E-value=1.7e+02 Score=20.69 Aligned_cols=41 Identities=0% Similarity=-0.074 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcc
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~ 220 (241)
+.+.+.++.|.+.++-+.++|......+...++.+. ...++
T Consensus 32 ee~~~~i~~l~~~d~gII~Ite~~a~~i~~~i~~~~-~~~~P 72 (104)
T PRK01395 32 QEAINTLRKLAMEDYGIIYITEQIAADIPETIERYD-NQVLP 72 (104)
T ss_pred HHHHHHHHHHhcCCcEEEEEcHHHHHHhHHHHHHhc-CCCCC
Confidence 455677777777788899999887777777777663 33444
No 391
>PRK06683 hypothetical protein; Provisional
Probab=24.39 E-value=1.9e+02 Score=19.51 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=29.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
-.+.-|..+.++.+++...++.++.....+.+...+..+
T Consensus 10 gk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~ 48 (82)
T PRK06683 10 ENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRT 48 (82)
T ss_pred CCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHH
Confidence 367889999999999887887777777556666665433
No 392
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=24.35 E-value=1.1e+02 Score=27.48 Aligned_cols=20 Identities=20% Similarity=-0.004 Sum_probs=17.3
Q ss_pred CCCCcEEEEecCcccccCcc
Q 026252 74 SVLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 74 ~~~~k~ViFD~DGTLvd~~~ 93 (241)
+..|.+|-||||+||.....
T Consensus 24 l~~i~~~GfdmDyTL~~Y~~ 43 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYNL 43 (424)
T ss_pred hhcCcEEeeccccchhhhcc
Confidence 56799999999999998654
No 393
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=24.26 E-value=96 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=20.5
Q ss_pred CCCChhHHHHHHHHHHC-CCeEEEEeCCcHHH
Q 026252 175 LPLRPGVAKLIDQALEK-GVKVAVCSTSNEKA 205 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~-gi~v~ivTn~~~~~ 205 (241)
..+.+++.++|+.|.+. +..++|+|+-....
T Consensus 18 ~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 18 AVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp ----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 57789999999999987 33599999998666
No 394
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.04 E-value=80 Score=25.97 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
+++..+|.+.+..|.+.|..+.|||.-. .+++.+.++.
T Consensus 169 PElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~Vadrv 206 (240)
T COG1126 169 PELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRV 206 (240)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheE
Confidence 5677889999999999999999999987 5566666654
No 395
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=24.02 E-value=50 Score=26.92 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 180 GVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 180 gv~elL~~Lk~~-gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
|+-.+...|+=. |.+.-++--.+..+.+..|+.+|+.
T Consensus 160 gpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~ 197 (262)
T KOG3040|consen 160 GPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVD 197 (262)
T ss_pred CchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcCCC
Confidence 444455565533 7888888777888999999988744
No 396
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=23.88 E-value=1.2e+02 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
..+.+.|..|.+.|.+++||+++. .....+++..+....+
T Consensus 20 ~~~~~~i~~l~~~g~~vvvV~g~g-~~~~~~~~~~~~~~~~ 59 (242)
T PF00696_consen 20 RELADDIALLSQLGIKVVVVHGGG-SFTDELLEKYGIEPKF 59 (242)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSH-HHHHHHHHHCTHTTSE
T ss_pred HHHHHHHHHHHhCCCeEEEEECCh-hhcCchHHhccCCccc
Confidence 455566777778899999999987 6777777776654433
No 397
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=23.85 E-value=1e+02 Score=20.95 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.0
Q ss_pred CChhHHHHHHHHHHCCCeEEE
Q 026252 177 LRPGVAKLIDQALEKGVKVAV 197 (241)
Q Consensus 177 l~pgv~elL~~Lk~~gi~v~i 197 (241)
..|.+.+.++.|++.|++-++
T Consensus 43 ~~P~i~~~l~~l~~~g~~~vv 63 (101)
T cd03409 43 LGPDTEEAIRELAEEGYQRVV 63 (101)
T ss_pred CCCCHHHHHHHHHHcCCCeEE
Confidence 379999999999999876433
No 398
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=23.83 E-value=1.9e+02 Score=25.34 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCC
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
++..|.++.+++.|.++.|++|.
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~ 71 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNT 71 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEecc
Confidence 34556666666666666666665
No 399
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=2.2e+02 Score=21.89 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=33.6
Q ss_pred ChhHHHHHHHHHHCCCe-EEEEeCCcHHHHHHHHHHhcCCC
Q 026252 178 RPGVAKLIDQALEKGVK-VAVCSTSNEKAVTAIVSFLLGPE 217 (241)
Q Consensus 178 ~pgv~elL~~Lk~~gi~-v~ivTn~~~~~~~~~l~~l~~~~ 217 (241)
.||-.++.+.++++|+- |++||=++..-..+.-+..|..+
T Consensus 58 lPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~~ 98 (165)
T COG0678 58 LPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEG 98 (165)
T ss_pred CccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCCc
Confidence 49999999999999997 88889888787888878776664
No 400
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=23.58 E-value=91 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
...+|+..++++.|+++|+++.+.-+.
T Consensus 60 ~~~FPdp~~~i~~l~~~g~k~~~~~~P 86 (317)
T cd06600 60 PYRFPEPKKLIDELHKRNVKLVTIVDP 86 (317)
T ss_pred hhcCCCHHHHHHHHHHCCCEEEEEeec
Confidence 356899999999999999998876543
No 401
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=23.44 E-value=85 Score=26.45 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~ 211 (241)
+-.+.+.+.++..+++|.++..+|++....+...-+
T Consensus 188 G~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 188 GYTREIVEAAELAKERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhc
Confidence 556788999999999999999999995555544433
No 402
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=23.30 E-value=1.1e+02 Score=27.52 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=9.0
Q ss_pred HHHHHHHHHHC-CCeEEEEeCC
Q 026252 181 VAKLIDQALEK-GVKVAVCSTS 201 (241)
Q Consensus 181 v~elL~~Lk~~-gi~v~ivTn~ 201 (241)
..+.|.+|.++ ++ -.|++|.
T Consensus 84 ~~~vl~~L~~~~~~-~~V~~~~ 104 (429)
T TIGR02765 84 PEDVLPELIKELGV-RTVFLHQ 104 (429)
T ss_pred HHHHHHHHHHHhCC-CEEEEec
Confidence 44555555443 33 3345554
No 403
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=23.14 E-value=1.7e+02 Score=23.61 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCe-EEEEeCCcHHHHHHHHHHh
Q 026252 181 VAKLIDQALEKGVK-VAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 181 v~elL~~Lk~~gi~-v~ivTn~~~~~~~~~l~~l 213 (241)
...-|+.|++.|+. +.||++.-.+..+.+-+..
T Consensus 34 IErqI~~L~e~gI~dI~IVvGYlkE~FeYLkdKy 67 (231)
T COG4750 34 IERQIEQLREAGIDDITIVVGYLKEQFEYLKDKY 67 (231)
T ss_pred HHHHHHHHHHCCCceEEEEeeehHHHHHHHHHhc
Confidence 34455555555554 5555555555555554443
No 404
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=23.06 E-value=25 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=26.1
Q ss_pred ccceeEeecccccccccCCccccccccccCCCCcEEEEecCccccc
Q 026252 45 FLGSRLNVSRRTSSANPMSMRNVRVTCSASVLPSALLFDCDGVLVD 90 (241)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ViFD~DGTLvd 90 (241)
-.+++|+....+.+..+|+. ||+++.++||=----+|
T Consensus 137 r~plhlsggqqqrvaiaral---------mmkpqvllfdeptaald 173 (242)
T COG4161 137 RYPLHLSGGQQQRVAIARAL---------MMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCceecccchhhhHHHHHHH---------hcCCcEEeecCcccccC
Confidence 35667777777777777776 78899999996444444
No 405
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=22.99 E-value=1.1e+02 Score=22.41 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCc
Q 026252 181 VAKLIDQALEKGVKVAVCSTSN 202 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~ 202 (241)
+.++++.|+++|+.+.++++..
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 4578899999999999998874
No 406
>COG4275 Uncharacterized conserved protein [Function unknown]
Probab=22.82 E-value=41 Score=24.86 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCcEEEEecCcccccCccchHHHHHHHHHHhhcCCCC
Q 026252 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVT 112 (241)
Q Consensus 76 ~~k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~g~~~~ 112 (241)
...+|=||+||+-+.-.. -+-+|..+++++|++.+
T Consensus 44 ~fgAvpfdi~gv~~th~~--e~~sFd~~l~~fgLd~p 78 (143)
T COG4275 44 EFGAVPFDIDGVELTHVG--ERCSFDTMLAKFGLDGP 78 (143)
T ss_pred hcCCcceeecceeEEeee--eeecHHHHHHHhCCCcH
Confidence 468999999999765443 23478999999999863
No 407
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=22.77 E-value=1.5e+02 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=28.5
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCcccceEEecC
Q 026252 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (241)
Q Consensus 183 elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f~~~~iv~s~ 228 (241)
++++...+.++.++++|+.+...+..+++..++. ..| .++++-
T Consensus 26 ~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~-~Pd--~~I~sv 68 (247)
T PF05116_consen 26 ELLEQQARPEILFVYVTGRSLESVLRLLREYNLP-QPD--YIITSV 68 (247)
T ss_dssp HHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-E-E-S--EEEETT
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCC-CCC--EEEecC
Confidence 3444344678999999999999999999987653 344 566654
No 408
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=22.70 E-value=1.7e+02 Score=26.20 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=13.0
Q ss_pred CcEEEEecCcccccCc
Q 026252 77 PSALLFDCDGVLVDTE 92 (241)
Q Consensus 77 ~k~ViFD~DGTLvd~~ 92 (241)
=+..|||+|.||+-..
T Consensus 197 eRVFiWDlDEtiIifh 212 (468)
T KOG3107|consen 197 ERVFIWDLDETIIIFH 212 (468)
T ss_pred eeEEEeeccchHHHHH
Confidence 4788999999998643
No 409
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=22.37 E-value=1.2e+02 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCC
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~ 201 (241)
.-.+.+.++++.++++|.++.++|+.
T Consensus 186 G~t~~~~~~~~~ak~~g~~vI~IT~~ 211 (284)
T PRK11302 186 GRTKSLVELAQLARENGATVIAITSA 211 (284)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCC
Confidence 55788999999999999999999983
No 410
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.30 E-value=1.2e+02 Score=22.24 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcH
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNE 203 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~ 203 (241)
+.+.++++.++++|.++.++|+...
T Consensus 76 ~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 76 EKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCc
Confidence 3467889999999999999999763
No 411
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=22.30 E-value=1.1e+02 Score=21.21 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=21.0
Q ss_pred CCChhHHHHHHHHHHCC-CeEEEEeCC
Q 026252 176 PLRPGVAKLIDQALEKG-VKVAVCSTS 201 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~g-i~v~ivTn~ 201 (241)
.-.+...++++.|++.| +++.+|.+.
T Consensus 58 ~~~~~~~~~l~~l~~~g~v~i~~C~~~ 84 (122)
T PF02635_consen 58 EGDPPLQELLKELKEAGGVKIYVCETC 84 (122)
T ss_dssp CTSHCHHHHHHHHHHTTT-EEEEEHHH
T ss_pred cccccHHHHHHHHHhcCCcEEEEcHHH
Confidence 34678889999999997 999998664
No 412
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=22.27 E-value=1.7e+02 Score=21.25 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCCCChhHHHHHHHHHHC---CCeEEEEeCCcH--HHHHHHHHHhc
Q 026252 174 LLPLRPGVAKLIDQALEK---GVKVAVCSTSNE--KAVTAIVSFLL 214 (241)
Q Consensus 174 ~~~l~pgv~elL~~Lk~~---gi~v~ivTn~~~--~~~~~~l~~l~ 214 (241)
.+.++++..+++..+.+. ++++.+.||+.. ......+..++
T Consensus 55 ep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 55 EPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp TGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence 467778888888888886 999999999965 33344444444
No 413
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=1.5e+02 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
+.|+++...+.|+++.|+++++ .+..+++.
T Consensus 122 i~ei~e~ae~~gykvfIvpGgs--~vkkIlKe 151 (209)
T COG1852 122 IGEIKEIAEKYGYKVFIVPGGS--FVKKILKE 151 (209)
T ss_pred hHHHHHHHHHhCcEEEEecChH--HHHHHHhh
Confidence 5688888888999999999996 78888886
No 414
>PRK07714 hypothetical protein; Provisional
Probab=21.63 E-value=2.2e+02 Score=19.77 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=30.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
-.+.-|..+.++.+++...++.++.+...+.....+..
T Consensus 17 Gk~v~G~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~ 54 (100)
T PRK07714 17 RKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITD 54 (100)
T ss_pred CCeeecHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHH
Confidence 46889999999999988889888888755656655554
No 415
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=21.62 E-value=3.2e+02 Score=22.22 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCC
Q 026252 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (241)
Q Consensus 181 v~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~ 216 (241)
+-..+..|.++++.+++||-.+.+.+...-++.|+.
T Consensus 95 ~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~ 130 (211)
T PF05988_consen 95 IDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWT 130 (211)
T ss_pred hhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCC
Confidence 335677889999999999999999999999998765
No 416
>PHA02416 hypothetical protein
Probab=21.50 E-value=1.5e+02 Score=21.42 Aligned_cols=40 Identities=10% Similarity=-0.014 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhcCCCCc
Q 026252 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA 219 (241)
Q Consensus 179 pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l~~~~~f 219 (241)
+.-+++|++.+.+++.-+.+||+.. +.+.-++...--.|.
T Consensus 12 eankdlldyfknknytrvaltnstd-ffwsqidsvdnggyl 51 (167)
T PHA02416 12 EANKDLLDYFKNKNYTRVALTNSTD-FFWSQIDSVDNGGYL 51 (167)
T ss_pred hhhhHHHHHhhcCCceEEEeecCcc-hhhhhcccccCCceE
Confidence 4556899999999999999999984 445444544333344
No 417
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.49 E-value=1e+02 Score=18.30 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=21.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~ 212 (241)
.+.+.+.+++++|++.|+.+ ++ ...+.+++.
T Consensus 16 GlI~~~~~~l~~l~~~g~~i-----s~-~l~~~~L~~ 46 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRI-----SP-KLIEEILRR 46 (48)
T ss_pred CChhhHHHHHHHHHHcCccc-----CH-HHHHHHHHH
Confidence 45568899999999998876 22 455555554
No 418
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.44 E-value=97 Score=26.95 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.4
Q ss_pred CCChhH--HHHHHHHHHCCCeEEEEeCC
Q 026252 176 PLRPGV--AKLIDQALEKGVKVAVCSTS 201 (241)
Q Consensus 176 ~l~pgv--~elL~~Lk~~gi~v~ivTn~ 201 (241)
..+|+. .+++++|+++|+++.+..+.
T Consensus 61 ~~FPdp~~~~mi~~L~~~G~k~~~~i~P 88 (339)
T cd06602 61 VRFPGLKMPEFVDELHANGQHYVPILDP 88 (339)
T ss_pred ccCCCccHHHHHHHHHHCCCEEEEEEeC
Confidence 467888 99999999999999887754
No 419
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=21.42 E-value=1.6e+02 Score=29.66 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHh
Q 026252 176 PLRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~-gi~v~ivTn~~~~~~~~~l~~l 213 (241)
.+.|++.++|+.|.+. +..|+|+|+-+.+.++..+...
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 4668899999999876 6789999999988888887643
No 420
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=21.30 E-value=2.4e+02 Score=18.20 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCC-----------cHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTS-----------NEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~-----------~~~~~~~~l~~l 213 (241)
....|.+.++++.+++.|..-+-+|++ +....+.+.+.+
T Consensus 30 ~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 30 EVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp THHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 466799999999999999777777777 555555555543
No 421
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.18 E-value=2.2e+02 Score=20.11 Aligned_cols=39 Identities=15% Similarity=0.028 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn~~~~~~~~~l~~l 213 (241)
-.+.-|..+.++.+++...++.|+.+...+.....+...
T Consensus 16 Gklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~ 54 (104)
T PRK05583 16 GKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNY 54 (104)
T ss_pred CCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHH
Confidence 478899999999999988998888888666666666543
No 422
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.17 E-value=1.8e+02 Score=26.49 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=25.4
Q ss_pred CCCChh-HHHHHHHHHHC--CCeEEEEeCCc--HHHHHHHHH
Q 026252 175 LPLRPG-VAKLIDQALEK--GVKVAVCSTSN--EKAVTAIVS 211 (241)
Q Consensus 175 ~~l~pg-v~elL~~Lk~~--gi~v~ivTn~~--~~~~~~~l~ 211 (241)
+-+.++ +.++|..++++ |+.++|.||+. .+.++.+++
T Consensus 90 PLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~ 131 (442)
T TIGR01290 90 PLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVD 131 (442)
T ss_pred cccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHH
Confidence 444443 67888888887 89999999995 344444433
No 423
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=21.07 E-value=1.1e+02 Score=26.56 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCST 200 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn 200 (241)
..-+|+..+++++|+++|+++++..+
T Consensus 60 ~~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 60 GGGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEec
Confidence 36789999999999999999877554
No 424
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=21.04 E-value=1.1e+02 Score=26.50 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEeC
Q 026252 175 LPLRPGVAKLIDQALEKGVKVAVCST 200 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~gi~v~ivTn 200 (241)
...+|+..++++.|+++|+++.+..+
T Consensus 60 ~~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 60 KERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 35789999999999999999976554
No 425
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=20.77 E-value=1.1e+02 Score=22.41 Aligned_cols=28 Identities=14% Similarity=0.001 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHC
Q 026252 164 ELFMVLIEKKLLPLRPGVAKLIDQALEK 191 (241)
Q Consensus 164 ~~~~~~~~~~~~~l~pgv~elL~~Lk~~ 191 (241)
..-++.|+++...+.++|.+.|..++++
T Consensus 30 ~~tWq~WE~G~~~IP~~Vie~l~~m~~~ 57 (118)
T PF08965_consen 30 SRTWQQWEKGERPIPDDVIEELLEMKSQ 57 (118)
T ss_dssp HHHHHHHHTTSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3445567777778888888888887754
No 426
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=20.65 E-value=91 Score=21.51 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=19.4
Q ss_pred cEEEEecCcccccCccchHHHHHHHHHHhh
Q 026252 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEK 107 (241)
Q Consensus 78 k~ViFD~DGTLvd~~~~~~~~a~~~~~~~~ 107 (241)
-+.+|| ||-|+-.+. -.++|+.++.-.
T Consensus 26 hgflfd-dg~~vw~e~--~d~~w~rl~~vv 52 (111)
T PF02484_consen 26 HGFLFD-DGDIVWSED--DDETWNRLCDVV 52 (111)
T ss_pred cceEec-CCcEEEecC--ChHHHHHHHHHH
Confidence 467898 688887765 346898887654
No 427
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=20.53 E-value=1.2e+02 Score=24.85 Aligned_cols=32 Identities=3% Similarity=-0.024 Sum_probs=25.3
Q ss_pred CCCChhHHHHHHHHHHC-CCeEEEEeCCcHHHH
Q 026252 175 LPLRPGVAKLIDQALEK-GVKVAVCSTSNEKAV 206 (241)
Q Consensus 175 ~~l~pgv~elL~~Lk~~-gi~v~ivTn~~~~~~ 206 (241)
..+.|++.++|+.|.+. +..++|+|+-+...+
T Consensus 24 ~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~ 56 (244)
T TIGR00685 24 AVVSDRLLTILQKLAARPHNAIWIISGRKFLEK 56 (244)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEECCChhhc
Confidence 45679999999999887 567889999864433
No 428
>TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
Probab=20.49 E-value=80 Score=22.37 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=14.5
Q ss_pred CCCcEEEEecCcccccCcc
Q 026252 75 VLPSALLFDCDGVLVDTEK 93 (241)
Q Consensus 75 ~~~k~ViFD~DGTLvd~~~ 93 (241)
-.+++||+|+|-..-.++.
T Consensus 15 ~~yrGVI~gwDp~~~~~ee 33 (101)
T TIGR02097 15 FGYRGVVIDVDPEYSNTEE 33 (101)
T ss_pred cCCCEEEEeEChhccCChH
Confidence 4578888888888776664
No 429
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=20.27 E-value=1.9e+02 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCChhHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHH
Q 026252 176 PLRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSF 212 (241)
Q Consensus 176 ~l~pgv~elL~~Lk~~-gi~v~ivTn~~~~~~~~~l~~ 212 (241)
.+.|++.++|+.|.+. +..|+|+|+-+.+.++..+..
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 4678999999999876 678999999998888888764
No 430
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=20.09 E-value=56 Score=26.08 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=11.2
Q ss_pred cEEEEecCccccc
Q 026252 78 SALLFDCDGVLVD 90 (241)
Q Consensus 78 k~ViFD~DGTLvd 90 (241)
..|-||+|||+..
T Consensus 59 ~~v~~D~~GT~m~ 71 (271)
T PF06901_consen 59 HTVTFDFQGTKMV 71 (271)
T ss_pred eeEEEeccceEEE
Confidence 5799999999875
Done!