BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026254
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1RJJ5|MUTS_RICBR DNA mismatch repair protein MutS OS=Rickettsia bellii (strain
RML369-C) GN=mutS PE=3 SV=1
Length = 888
Score = 38.5 bits (88), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 48/83 (57%)
Query: 55 DPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTASEIIYGNKTSIL 114
D + NG L ++ +++ T + + I+ +++IG+F+ T+ + N ++ + ++ + +
Sbjct: 461 DLINNGKLHIEKLKDQYKKETGIDSLKISHNNVIGLFIDITAKNANKINDPKFIHRQTTV 520
Query: 115 SSIKYFTILLCFLVAFLCNVQSI 137
+S++Y T L L + L N +++
Sbjct: 521 NSVRYTTAELQKLESDLVNAKTL 543
>sp|A8GX86|MUTS_RICB8 DNA mismatch repair protein MutS OS=Rickettsia bellii (strain OSU
85-389) GN=mutS PE=3 SV=1
Length = 888
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 48/83 (57%)
Query: 55 DPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTASEIIYGNKTSIL 114
D + NG L ++ +++ T + + I+ +++IG+F+ T+ + N ++ + ++ + +
Sbjct: 461 DLINNGKLHIEKLKDQYKKETGIDSLKISHNNVIGLFIDITAKNANKINDPKFIHRQTTV 520
Query: 115 SSIKYFTILLCFLVAFLCNVQSI 137
+S++Y T L L + L N +++
Sbjct: 521 NSVRYTTAELQKLESDLVNAKTL 543
>sp|A8EZG1|MUTS_RICCK DNA mismatch repair protein MutS OS=Rickettsia canadensis (strain
McKiel) GN=mutS PE=3 SV=1
Length = 891
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 45 RHQWVHSI--MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTA 102
+H++ + + D + NG L ++ +R+ T + + I +++IG+F+ T+ + N
Sbjct: 454 KHEYHPKVAQLHDLINNGKLHIEKLRDQYRKETGIDSLKICHNNVIGLFIDITAKNANKI 513
Query: 103 SEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSI 137
++ + ++ + ++S++Y T L L + L N +++
Sbjct: 514 TDPKFIHRQTTVNSVRYTTNELQKLESNLVNAKTL 548
>sp|Q4UM86|MUTS_RICFE DNA mismatch repair protein MutS OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=mutS PE=3 SV=1
Length = 886
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 45 RHQWVHSI--MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTA 102
+H++ + + D + NG L ++ +++ T + + I+ +++IG+F+ T+ + N
Sbjct: 449 KHEYHPKVAQLHDLINNGKLHIEKLKDQYCKETGIDSLKISHNNVIGLFIDITAKNVNKI 508
Query: 103 SEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSI 137
+ + ++ + ++S++Y T L L + L N +++
Sbjct: 509 LDPKFIHRQTTVNSVRYTTTELQKLESELANAKTL 543
>sp|Q68X73|MUTS_RICTY DNA mismatch repair protein MutS OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=mutS PE=3 SV=1
Length = 891
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 47/85 (55%)
Query: 53 MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTASEIIYGNKTS 112
+ D + NG L V+ +++ T + + I+ ++++G+F+ T+ + N + + ++ +
Sbjct: 464 LNDLINNGKLHVEKLKDQYRKETGIDSLKISHNNVLGLFIDITAKNVNKILDPKFIHRQT 523
Query: 113 ILSSIKYFTILLCFLVAFLCNVQSI 137
++S++Y T L L L N Q++
Sbjct: 524 TVNSVRYTTYELQNLENELVNAQTL 548
>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana
GN=ZIFL1 PE=2 SV=1
Length = 478
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 190 IFGPIPMFVCCCTMSFILYFLDTTSSFTRE-LHSHSFKEEAKLDDLESPVQSP 241
IFG P F+ C +S + + SS E LH+H F ++ D L+ P
Sbjct: 204 IFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYDALKDLSDDP 256
>sp|A8GRI6|MUTS_RICRS DNA mismatch repair protein MutS OS=Rickettsia rickettsii (strain
Sheila Smith) GN=mutS PE=3 SV=1
Length = 886
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 45 RHQWVHSI--MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTA 102
+H++ + + D + NG L ++ +++ T + + I+ +++IG+F+ T+ + N
Sbjct: 449 KHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKISHNNVIGLFIDITAKNVNKI 508
Query: 103 SEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSI 137
+ + ++ + ++ ++Y T L L + L N +++
Sbjct: 509 LDPKFIHRQTTVNHVRYTTAELQKLESELVNAKTL 543
>sp|B0BWY8|MUTS_RICRO DNA mismatch repair protein MutS OS=Rickettsia rickettsii (strain
Iowa) GN=mutS PE=3 SV=1
Length = 890
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 45 RHQWVHSI--MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTA 102
+H++ + + D + NG L ++ +++ T + + I+ +++IG+F+ T+ + N
Sbjct: 453 KHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKISHNNVIGLFIDITAKNVNKI 512
Query: 103 SEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSI 137
+ + ++ + ++ ++Y T L L + L N +++
Sbjct: 513 LDPKFIHRQTTVNHVRYTTAELQKLESELVNAKTL 547
>sp|C3PN02|MUTS_RICAE DNA mismatch repair protein MutS OS=Rickettsia africae (strain
ESF-5) GN=mutS PE=3 SV=1
Length = 890
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 45 RHQWVHSI--MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTA 102
+H++ + + D + NG L ++ +++ T + + I+ +++IG+F+ T+ + N
Sbjct: 453 KHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKISHNNVIGLFIDITAKNVNKI 512
Query: 103 SEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSI 137
+ + ++ + ++ ++Y T L L + L N +++
Sbjct: 513 LDPKFIHRQTTVNHVRYTTAELQKLESELVNAKTL 547
>sp|Q92IL9|MUTS_RICCN DNA mismatch repair protein MutS OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=mutS PE=3 SV=1
Length = 890
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 45 RHQWVHSI--MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTA 102
+H++ + + D + NG L ++ +++ T + + I+ +++IG+F+ T+ + N
Sbjct: 453 KHEYHPKVAQLHDLINNGKLYIEKLKDQYRKETGIDSLKISHNNVIGLFIDITAKNVNKI 512
Query: 103 SEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSI 137
+ + ++ + ++ ++Y T L L + L N +++
Sbjct: 513 LDPKFIHRQTTVNHVRYTTAELQKLESELVNAKTL 547
>sp|A8F164|MUTS_RICM5 DNA mismatch repair protein MutS OS=Rickettsia massiliae (strain
Mtu5) GN=mutS PE=3 SV=1
Length = 891
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 45 RHQWVHSI--MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTA 102
+H++ + + D + NG L + +++ T + + I+ +++IG+F+ T+ + N
Sbjct: 454 KHEYHPKVAQLHDLINNGKLHIDKLKDQYRKETGIDSLKISHNNVIGLFIDITAKNVNKI 513
Query: 103 SEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSI 137
+ + ++ + ++ ++Y T L L + L N +++
Sbjct: 514 LDPKFIHRQTTVNHVRYTTAELQKLESELVNAKTL 548
>sp|Q2V352|DF271_ARATH Putative defensin-like protein 271 OS=Arabidopsis thaliana
GN=At5g23212 PE=3 SV=1
Length = 75
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 114 LSSIKYFTILLCFLVAFLCNVQSIRYYDHVS 144
++S+K + LC +V+FL NVQS R D S
Sbjct: 1 MTSMKLHIVALCIIVSFLVNVQSTRIMDASS 31
>sp|Q9ZDM9|MUTS_RICPR DNA mismatch repair protein MutS OS=Rickettsia prowazekii (strain
Madrid E) GN=mutS PE=3 SV=1
Length = 891
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 44/85 (51%)
Query: 53 MTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTASEIIYGNKTS 112
+ D + N L V+ +++ T + + I+ ++++G F+ T + N + + ++ +
Sbjct: 464 LNDLINNKKLHVEKLKDQYRKETRIESLKISHNNVLGFFIDITPKNVNKILDPKFIHRQT 523
Query: 113 ILSSIKYFTILLCFLVAFLCNVQSI 137
++S++Y T L L L N Q++
Sbjct: 524 TINSVRYTTYELQNLENELVNAQTL 548
>sp|P43657|LPAR6_HUMAN Lysophosphatidic acid receptor 6 OS=Homo sapiens GN=LPAR6 PE=1 SV=3
Length = 344
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 56 PLKNGTLAVQTIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTASEIIYGN 109
P K+ TL +T RN + T + T I S VFV ST S GN ASE + N
Sbjct: 121 PFKSKTL--RTKRNAKIVCTGVWLTVIG-GSAPAVFVQSTHSQGNNASEACFEN 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,295,898
Number of Sequences: 539616
Number of extensions: 3062876
Number of successful extensions: 10234
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10218
Number of HSP's gapped (non-prelim): 23
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)