Query 026254
Match_columns 241
No_of_seqs 105 out of 291
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04654 DUF599: Protein of un 100.0 1.4E-68 3.1E-73 467.4 22.0 208 8-219 1-215 (216)
2 COG3821 Predicted membrane pro 100.0 2.8E-57 6E-62 386.3 16.9 217 5-225 4-229 (234)
3 PRK14397 membrane protein; Pro 48.0 69 0.0015 28.6 6.7 16 83-98 81-96 (222)
4 PF15201 Rod_cone_degen: Progr 47.3 29 0.00063 23.7 3.2 20 195-217 5-24 (54)
5 PF15050 SCIMP: SCIMP protein 46.7 32 0.00069 28.0 3.9 54 188-241 8-70 (133)
6 COG1288 Predicted membrane pro 46.5 38 0.00083 33.3 5.2 45 5-49 217-262 (481)
7 PRK13823 conjugal transfer pro 42.3 40 0.00088 26.0 3.8 30 7-36 42-71 (94)
8 TIGR00985 3a0801s04tom mitocho 40.3 37 0.0008 28.4 3.6 28 10-37 12-39 (148)
9 PF11808 DUF3329: Domain of un 35.6 99 0.0021 23.2 5.0 30 180-209 15-44 (90)
10 PLN00092 photosystem I reactio 34.1 66 0.0014 26.4 3.9 64 66-138 57-120 (137)
11 PF10617 DUF2474: Protein of u 33.8 84 0.0018 20.6 3.7 26 187-212 8-33 (40)
12 COG3462 Predicted membrane pro 31.0 41 0.00088 27.0 2.2 41 169-210 31-71 (117)
13 KOG4056 Translocase of outer m 29.3 72 0.0016 26.6 3.5 29 9-37 13-41 (143)
14 PRK10278 hypothetical protein; 28.7 87 0.0019 25.6 3.9 30 114-143 74-109 (130)
15 PF02064 MAS20: MAS20 protein 28.0 20 0.00043 29.0 0.0 28 10-37 2-29 (121)
16 TIGR02106 cyd_oper_ybgT cyd op 26.8 1.3E+02 0.0029 18.5 3.5 20 186-207 3-22 (30)
17 COG5268 TrbD Type IV secretory 24.9 77 0.0017 24.3 2.7 29 7-35 49-77 (93)
18 PF05545 FixQ: Cbb3-type cytoc 24.2 1.9E+02 0.0041 19.0 4.3 29 189-217 11-39 (49)
19 COG4818 Predicted membrane pro 21.4 1.4E+02 0.0031 23.4 3.6 34 183-216 54-87 (105)
20 TIGR03750 conj_TIGR03750 conju 21.0 1.9E+02 0.0042 23.0 4.4 23 184-206 43-65 (111)
21 PF10658 DUF2484: Protein of u 21.0 2.6E+02 0.0057 20.9 4.8 39 171-209 26-67 (77)
No 1
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=100.00 E-value=1.4e-68 Score=467.43 Aligned_cols=208 Identities=35% Similarity=0.586 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHHHHHHHH
Q 026254 8 YVLIPTGLLVMGVYHIWLLYTILRFPRRSVIGLNAESRHQWVHSIMTDPLKNGTLAVQTIRNNIMASTLLATTAITLSSL 87 (241)
Q Consensus 8 ~~av~~~l~~~~~Yh~~l~~~~~~~p~~t~~g~~~~~R~~W~~~m~~r~~~~~ildvq~Lrn~~~~~tffASTsill~~g 87 (241)
++++|++++||+|||+|++++.|++| |++|+|+++|++||++|++|| ++|+|+|+|||++|++||||||||++++|
T Consensus 1 ~~av~~~l~~~~gY~~~l~~~~~~~p--t~~~~~~~~R~~W~~~m~~r~--~~ildvq~Lrn~~~~~tffASTailli~g 76 (216)
T PF04654_consen 1 LIAVPLFLLCWVGYHLYLERRVRRRP--TLSGIMNQYRRAWMRQMMDRK--NRILDVQTLRNLIMSATFFASTAILLIGG 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999 999999999999999999874 56999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCcccccccCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhheeccCCCCCC------CcchHH
Q 026254 88 IGVFVSSTSSSGNTASEIIYGNK-TSILSSIKYFTILLCFLVAFLCNVQSIRYYDHVSFLVTLPTSKG------NTNYIE 160 (241)
Q Consensus 88 l~a~l~s~~~~~~~~~~~~~g~~-~~~~~~lKll~ll~if~~AFf~F~ws~R~~n~~~~Li~~P~~~~------~~~~~~ 160 (241)
++++++++|+..+..+|++|+.+ ++..||+|++++++||++|||||+||+||||||+||||+||+++ .+..++
T Consensus 77 ~~all~~~~~~~~~~~~~~~~~~~s~~~~~lK~l~ll~~f~~aFf~f~~s~R~~n~~~~li~~~p~~~~~~~~~~~~~~~ 156 (216)
T PF04654_consen 77 LLALLGSTDKLSSVASDLPFGGSASRFLFELKLLLLLVIFLYAFFKFTWSIRQYNHASFLIGAPPEPPEGDEAEREAFAE 156 (216)
T ss_pred HHHHHcCcHHHhhHHhhCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHH
Confidence 99999999999988899999988 66789999999999999999999999999999999999976422 345778
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhcChhhhh
Q 026254 161 YVARNLNRGSFFWSLGLRAFYLSFPLFLWIFGPIPMFVCCCTMSFILYFLDTTSSFTRE 219 (241)
Q Consensus 161 ~v~~~l~ra~~~~n~GlRa~Yfal~ll~W~~gP~~l~~~tv~vV~vLy~rdf~S~~~~~ 219 (241)
++++++++|+++||.|+|+|||++|+++|++||++++++|+++|++||+|||.|++++.
T Consensus 157 ~~a~~~~~a~~~fn~GlRa~yfal~~l~W~~gP~~~~~~t~~vv~~L~~rdf~S~~~~a 215 (216)
T PF04654_consen 157 YAARVLNRAGNFFNRGLRAYYFALPLLLWFFGPWALIAATVLVVAVLYRRDFRSRARHA 215 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchHhhc
Confidence 89999999999999999999999999999999999999999999999999999998764
No 2
>COG3821 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.8e-57 Score=386.32 Aligned_cols=217 Identities=17% Similarity=0.183 Sum_probs=195.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhcCCCCcHhHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHHHHH
Q 026254 5 KLDYVLIPTGLLVMGVYHIWLLYTILRFPRRSVIGLNAESRHQWVHSIMTDPLKNGTLAVQTIRNNIMASTLLATTAITL 84 (241)
Q Consensus 5 ~lD~~av~~~l~~~~~Yh~~l~~~~~~~p~~t~~g~~~~~R~~W~~~m~~r~~~~~ildvq~Lrn~~~~~tffASTsill 84 (241)
..|++++.+|++||++|.....++-+.+.+++. .|+.+||+||++|..||.+ |+|.|+++|++++++|||||++++
T Consensus 4 l~d~lA~~~F~~~W~~yt~~~~~kg~srasL~t--~m~~~R~~Wmr~~l~Rdir--iiDtqii~glq~gtaFFASstlia 79 (234)
T COG3821 4 LLDLLALAVFLLCWLLYTPASTRKGFSRASLNT--AMNEIRRRWMRNMLVRDIR--IIDTQIIGGLQNGTAFFASSTLIA 79 (234)
T ss_pred HHHHHHHHHHHHHHHhhhHHhccCccchhHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHhHhccchHHHHhhHHH
Confidence 469999999999999999999887777776666 9999999999999999755 999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccccccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhheeccC-CCCC----CCcch
Q 026254 85 SSLIGVFVSSTSSSGNTASEIIYGNKTS-ILSSIKYFTILLCFLVAFLCNVQSIRYYDHVSFLVTL-PTSK----GNTNY 158 (241)
Q Consensus 85 ~~gl~a~l~s~~~~~~~~~~~~~g~~~~-~~~~lKll~ll~if~~AFf~F~ws~R~~n~~~~Li~~-P~~~----~~~~~ 158 (241)
++|+++++|++|++..+.+|+|+...++ ..+|+|++++.++|.|+||||.||+||||||+++||+ |--. +++.+
T Consensus 80 lgg~falLgatD~v~~v~~dLp~v~~~sr~afelKv~~l~~~f~ysffkFgWs~RlfNyc~iliGa~PM~~~~~~~~~~a 159 (234)
T COG3821 80 LGGCFALLGATDRVLSVLSDLPFVAKASRTAFELKVGGLTVLFAYSFFKFGWSYRLFNYCSILIGAIPMWADNAVDAEAA 159 (234)
T ss_pred HHHHHHHHcCchhHHHHHcCCchhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccccchHHH
Confidence 9999999999999999999999988866 4799999999999999999999999999999999997 6311 12222
Q ss_pred H---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhcChhhhhhhcccc
Q 026254 159 I---EYVARNLNRGSFFWSLGLRAFYLSFPLFLWIFGPIPMFVCCCTMSFILYFLDTTSSFTRELHSHSF 225 (241)
Q Consensus 159 ~---~~v~~~l~ra~~~~n~GlRa~Yfal~ll~W~~gP~~l~~~tv~vV~vLy~rdf~S~~~~~~~~~~~ 225 (241)
+ +.+.+++..|..+||.|+|+||||+++++||++|++|+++|++++.+|+||||+|++++++.+.+-
T Consensus 160 e~aaerai~mn~lAak~FN~GlRa~ffsig~lgWfi~p~vFm~~T~~vilvL~rRqf~S~ar~al~eqp~ 229 (234)
T COG3821 160 ERAAERAIRMNILAAKHFNAGLRAYFFSIGYLGWFISPYVFMLSTLGVILVLLRRQFFSEARRALIEQPR 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 333477778999999999999999999999999999999999999999999999999988877654
No 3
>PRK14397 membrane protein; Provisional
Probab=48.05 E-value=69 Score=28.55 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhccCCC
Q 026254 83 TLSSLIGVFVSSTSSS 98 (241)
Q Consensus 83 ll~~gl~a~l~s~~~~ 98 (241)
..+.|+.+++|-..+.
T Consensus 81 ~~~~glaavlGH~fPi 96 (222)
T PRK14397 81 HSLTALAALLGHLYSC 96 (222)
T ss_pred HHHHHHHHHHcccchh
Confidence 3456788888776543
No 4
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=47.28 E-value=29 Score=23.73 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhhcChhh
Q 026254 195 PMFVCCCTMSFILYFLDTTSSFT 217 (241)
Q Consensus 195 ~l~~~tv~vV~vLy~rdf~S~~~ 217 (241)
.|+++|+ ..||||.|..+..
T Consensus 5 lfllstl---amlwrrrfanrvq 24 (54)
T PF15201_consen 5 LFLLSTL---AMLWRRRFANRVQ 24 (54)
T ss_pred HHHHHHH---HHHHHHHHhccCC
Confidence 3455554 4578999988764
No 5
>PF15050 SCIMP: SCIMP protein
Probab=46.66 E-value=32 Score=28.03 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=33.1
Q ss_pred HHhHhhHHHHHHHHHHHHHHH---HhhhcC----hhhhhhhccccc--ccccccCCCCCCCCC
Q 026254 188 LWIFGPIPMFVCCCTMSFILY---FLDTTS----SFTRELHSHSFK--EEAKLDDLESPVQSP 241 (241)
Q Consensus 188 ~W~~gP~~l~~~tv~vV~vLy---~rdf~S----~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 241 (241)
.|++-.++.++.|+++-.+|| |++++- +..+.+.+++-. +.-.|.-.++|+|-|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYENv~n~~~~~LP 70 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYENVLNQSPVQLP 70 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHHHhhcCCcCCCC
Confidence 488888888888888888887 666643 223455544332 333344555666654
No 6
>COG1288 Predicted membrane protein [Function unknown]
Probab=46.51 E-value=38 Score=33.35 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhcCCCCcHhH-HHHHHHHHHH
Q 026254 5 KLDYVLIPTGLLVMGVYHIWLLYTILRFPRRSVIG-LNAESRHQWV 49 (241)
Q Consensus 5 ~lD~~av~~~l~~~~~Yh~~l~~~~~~~p~~t~~g-~~~~~R~~W~ 49 (241)
.+-++...++.++-+.|-.|+..|+|++|+.+... ...+.|+.|.
T Consensus 217 ~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~ 262 (481)
T COG1288 217 GLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFK 262 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhh
Confidence 45677888899999999999999999999988642 2333444443
No 7
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=42.34 E-value=40 Score=26.03 Aligned_cols=30 Identities=10% Similarity=-0.097 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 026254 7 DYVLIPTGLLVMGVYHIWLLYTILRFPRRS 36 (241)
Q Consensus 7 D~~av~~~l~~~~~Yh~~l~~~~~~~p~~t 36 (241)
++.+...++++|+.=|..+.+..|++|...
T Consensus 42 ~~~a~~~gl~lw~v~h~~l~~mAK~DP~~~ 71 (94)
T PRK13823 42 TWRAALFGIALWFGALFALRLMAKADPKMR 71 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 344667799999999999999999999543
No 8
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=40.30 E-value=37 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.030 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCcH
Q 026254 10 LIPTGLLVMGVYHIWLLYTILRFPRRSV 37 (241)
Q Consensus 10 av~~~l~~~~~Yh~~l~~~~~~~p~~t~ 37 (241)
+...+.+.++||-+|..|+.|++|..--
T Consensus 12 ~ag~a~~~flgYciYFD~KRR~dPdFRk 39 (148)
T TIGR00985 12 AAGIAAAAFLGYAIYFDYKRRNDPDFRK 39 (148)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCHHHHH
Confidence 3445678899999999999999998544
No 9
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=35.60 E-value=99 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 026254 180 FYLSFPLFLWIFGPIPMFVCCCTMSFILYF 209 (241)
Q Consensus 180 ~Yfal~ll~W~~gP~~l~~~tv~vV~vLy~ 209 (241)
++....+++|++|.++..++..+++.+.++
T Consensus 15 ~~l~~~lvG~~~g~~~~~l~~~l~~~l~wh 44 (90)
T PF11808_consen 15 LLLAAALVGWLFGHLWWALLLGLLLYLFWH 44 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456677788999998765555555444443
No 10
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=34.09 E-value=66 Score=26.35 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=40.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 026254 66 TIRNNIMASTLLATTAITLSSLIGVFVSSTSSSGNTASEIIYGNKTSILSSIKYFTILLCFLVAFLCNVQSIR 138 (241)
Q Consensus 66 ~Lrn~~~~~tffASTsill~~gl~a~l~s~~~~~~~~~~~~~g~~~~~~~~lKll~ll~if~~AFf~F~ws~R 138 (241)
.-.|.-|+++.+|..+.......-++.---|+.+.--..++||-.+. ++...+..-|..+|++=
T Consensus 57 ~~~~~g~~asl~Aaa~a~a~~a~PA~AlVDeRlsteGTGlplGlsn~---------~LgwIL~gVf~lIWslY 120 (137)
T PLN00092 57 KSSNMGMGASLMAAACAVAMSASPAMALVDERMSTEGTGLPFGLSNN---------LLGWILLGVFGLIWSLY 120 (137)
T ss_pred cccccchhHHHHHHHHHHHhhcCcHHHHHHHhhcCCCccccccccCc---------chhhHHHhHHHHHHHHH
Confidence 34566899999998877766654444433344444335588998877 34444456666777763
No 11
>PF10617 DUF2474: Protein of unknown function (DUF2474); InterPro: IPR018895 This family of short proteins has no known function.
Probab=33.79 E-value=84 Score=20.64 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.4
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHhhh
Q 026254 187 FLWIFGPIPMFVCCCTMSFILYFLDT 212 (241)
Q Consensus 187 l~W~~gP~~l~~~tv~vV~vLy~rdf 212 (241)
++||++=|..-+.++.+|..+.|.=.
T Consensus 8 l~W~v~iW~~SV~aL~~va~~~Rllm 33 (40)
T PF10617_consen 8 LGWFVLIWAASVLALGVVAMLFRLLM 33 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998887643
No 12
>COG3462 Predicted membrane protein [Function unknown]
Probab=30.95 E-value=41 Score=26.96 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=27.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHh
Q 026254 169 GSFFWSLGLRAFYLSFPLFLWIFGPIPMFVCCCTMSFILYFL 210 (241)
Q Consensus 169 a~~~~n~GlRa~Yfal~ll~W~~gP~~l~~~tv~vV~vLy~r 210 (241)
++.||+.|.|+.-=+ -+-.|++-|+.-+++-+.+|..+|+.
T Consensus 31 gg~~y~~gy~gm~GG-~yGm~lImpI~~~vvli~lvvfm~~~ 71 (117)
T COG3462 31 GGAFYPGGYRGMMGG-LYGMWLIMPIFWAVVLIFLVVFMFYI 71 (117)
T ss_pred cCcccCCCccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556676666433222 23468999998888888777777764
No 13
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.32 E-value=72 Score=26.56 Aligned_cols=29 Identities=14% Similarity=-0.035 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCcH
Q 026254 9 VLIPTGLLVMGVYHIWLLYTILRFPRRSV 37 (241)
Q Consensus 9 ~av~~~l~~~~~Yh~~l~~~~~~~p~~t~ 37 (241)
++-.++.+..+||-+|..++.|.+|..--
T Consensus 13 I~agiag~af~gYciYFd~KRrsdP~fk~ 41 (143)
T KOG4056|consen 13 IAAGIAGLAFIGYCIYFDKKRRSDPDFKK 41 (143)
T ss_pred HHHHHHHHHHHHHHhhcccccccChhHHH
Confidence 34456778899999999999999998554
No 14
>PRK10278 hypothetical protein; Provisional
Probab=28.70 E-value=87 Score=25.59 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH------HHHhhhhhhh
Q 026254 114 LSSIKYFTILLCFLVAFLCN------VQSIRYYDHV 143 (241)
Q Consensus 114 ~~~lKll~ll~if~~AFf~F------~ws~R~~n~~ 143 (241)
-...|++++++..+.+++.| +...|...+.
T Consensus 74 WLt~Kl~~lv~YI~lg~~Al~~k~~~~~~~R~~af~ 109 (130)
T PRK10278 74 WLTEKLFGVIIYIVLGFIALDYRRMRSQQARFIAFP 109 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 45679999999999998887 4556665544
No 15
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.02 E-value=20 Score=28.98 Aligned_cols=28 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCcH
Q 026254 10 LIPTGLLVMGVYHIWLLYTILRFPRRSV 37 (241)
Q Consensus 10 av~~~l~~~~~Yh~~l~~~~~~~p~~t~ 37 (241)
++.++.+..+||-+|..|+.|++|..--
T Consensus 2 ~ag~a~~~~lgYciYFD~KRR~dP~frk 29 (121)
T PF02064_consen 2 AAGVAAAAFLGYCIYFDYKRRSDPDFRK 29 (121)
T ss_dssp ----------------------------
T ss_pred hHHHHHHHHHHHHhhcccccccChHHHH
Confidence 4556778899999999999999998544
No 16
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=26.79 E-value=1.3e+02 Score=18.49 Aligned_cols=20 Identities=25% Similarity=0.683 Sum_probs=11.5
Q ss_pred HHHHhHhhHHHHHHHHHHHHHH
Q 026254 186 LFLWIFGPIPMFVCCCTMSFIL 207 (241)
Q Consensus 186 ll~W~~gP~~l~~~tv~vV~vL 207 (241)
++.|++|-... ++..++..+
T Consensus 3 YfaWilG~~lA--~~~~v~~a~ 22 (30)
T TIGR02106 3 YFAWILGTLLA--CAFGVLNAM 22 (30)
T ss_pred hHHHHHHHHHH--HHHHHHHHH
Confidence 46899997654 444444333
No 17
>COG5268 TrbD Type IV secretory pathway, TrbD component [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.91 E-value=77 Score=24.33 Aligned_cols=29 Identities=17% Similarity=0.000 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026254 7 DYVLIPTGLLVMGVYHIWLLYTILRFPRR 35 (241)
Q Consensus 7 D~~av~~~l~~~~~Yh~~l~~~~~~~p~~ 35 (241)
|+++-.+++++|+.=|....+..|.+|..
T Consensus 49 ~Wiaa~fGl~iW~va~a~~r~~Ak~DP~~ 77 (93)
T COG5268 49 LWIAAGFGLGIWFVAHALARWLAKADPLF 77 (93)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcChHH
Confidence 67777889999999999999999999953
No 18
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.24 E-value=1.9e+02 Score=19.04 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred HhHhhHHHHHHHHHHHHHHHHhhhcChhh
Q 026254 189 WIFGPIPMFVCCCTMSFILYFLDTTSSFT 217 (241)
Q Consensus 189 W~~gP~~l~~~tv~vV~vLy~rdf~S~~~ 217 (241)
=.++.+.+++.-++++...|++..+.+.+
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~~k~~~e 39 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPRNKKRFE 39 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence 34567778888888888888877655433
No 19
>COG4818 Predicted membrane protein [Function unknown]
Probab=21.42 E-value=1.4e+02 Score=23.44 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHhhhcChh
Q 026254 183 SFPLFLWIFGPIPMFVCCCTMSFILYFLDTTSSF 216 (241)
Q Consensus 183 al~ll~W~~gP~~l~~~tv~vV~vLy~rdf~S~~ 216 (241)
.+|..+|++.+...+++-++....+|.--..++.
T Consensus 54 ~iP~Ig~lls~~v~l~a~iLwlv~mykAyrGe~f 87 (105)
T COG4818 54 FIPYIGWLLSGLVGLAAFILWLVCMYKAYRGERF 87 (105)
T ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHcCCee
Confidence 4688899999999988888888888765544443
No 20
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.00 E-value=1.9e+02 Score=23.01 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=12.1
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHH
Q 026254 184 FPLFLWIFGPIPMFVCCCTMSFI 206 (241)
Q Consensus 184 l~ll~W~~gP~~l~~~tv~vV~v 206 (241)
++.-.|.+.|..++++.+++|.+
T Consensus 43 ~~~~~w~~~p~~~lig~~l~v~~ 65 (111)
T TIGR03750 43 LLAGPWALIPTGALLGPILVVLI 65 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335666666655555555443
No 21
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=20.95 E-value=2.6e+02 Score=20.91 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=29.0
Q ss_pred hhhhhhHHHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHH
Q 026254 171 FFWSLGLRAFYLSFPLFLWI---FGPIPMFVCCCTMSFILYF 209 (241)
Q Consensus 171 ~~~n~GlRa~Yfal~ll~W~---~gP~~l~~~tv~vV~vLy~ 209 (241)
++|..|.=-.-.++|+++|. .||+.-+++-...+.+|.+
T Consensus 26 ~hw~~a~~Lia~g~pLlg~v~~~~Gp~~gl~~L~ag~S~lRw 67 (77)
T PF10658_consen 26 NHWRPAYVLIAAGIPLLGWVTYQNGPWWGLLVLAAGMSMLRW 67 (77)
T ss_pred hcchhHHHHHHHHhhHhhhhHhhhChHHHHHHHHHHHHHHHh
Confidence 55656666777889999887 7999988777777666543
Done!