Query 026254
Match_columns 241
No_of_seqs 105 out of 291
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 37.0 29 0.00099 23.2 3.0 23 199-221 25-47 (54)
2 2l8s_A Integrin alpha-1; trans 20.3 58 0.002 21.8 2.1 19 200-218 23-41 (54)
3 1waz_A MERF; protein structure 11.1 38 0.0013 21.9 -0.7 22 4-25 18-41 (46)
4 2ki9_A Cannabinoid receptor 2; 9.7 68 0.0023 18.2 0.1 19 9-27 10-28 (33)
5 2k1a_A Integrin alpha-IIB; sin 8.4 2.6E+02 0.0087 17.5 2.5 15 201-215 25-39 (42)
6 2k1k_A Ephrin type-A receptor 8.0 2.5E+02 0.0086 17.0 2.3 20 191-210 18-37 (38)
7 4hkr_A Calcium release-activat 7.9 8.5E+02 0.029 20.4 6.2 48 158-205 104-156 (214)
8 3rfr_J PMOA; membrane, oxidore 7.6 2.1E+02 0.007 24.9 2.4 24 5-28 25-49 (252)
9 3h3g_B Parathyroid hormone-rel 6.6 2.9E+02 0.0099 15.4 1.8 16 40-55 4-19 (24)
10 2h3o_A MERF; membrane protein, 6.2 96 0.0033 21.2 -0.4 28 5-33 31-58 (61)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.98 E-value=29 Score=23.24 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhcChhhhhhh
Q 026254 199 CCCTMSFILYFLDTTSSFTRELH 221 (241)
Q Consensus 199 ~tv~vV~vLy~rdf~S~~~~~~~ 221 (241)
.-.+++.+||..-|+.+.+...+
T Consensus 25 lL~li~~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 25 LLTILVLAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSCC
T ss_pred HHHHHHHHHHHcCcccCCCCCcc
Confidence 33467889999999987664333
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.32 E-value=58 Score=21.79 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhcChhhh
Q 026254 200 CCTMSFILYFLDTTSSFTR 218 (241)
Q Consensus 200 tv~vV~vLy~rdf~S~~~~ 218 (241)
-.+++.+||...|+.+.++
T Consensus 23 L~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 23 LMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHcCcccCCCc
Confidence 3467889999999987653
No 3
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=11.11 E-value=38 Score=21.92 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=13.3
Q ss_pred cchhHHHHH--HHHHHHHHHHHHH
Q 026254 4 KKLDYVLIP--TGLLVMGVYHIWL 25 (241)
Q Consensus 4 ~~lD~~av~--~~l~~~~~Yh~~l 25 (241)
.++|++++| .++.....|.+|.
T Consensus 18 gyLDyVLlPaLa~Fi~lt~ya~~r 41 (46)
T 1waz_A 18 GYLDYVLLPALAIFIGLTIYAIQR 41 (46)
T ss_dssp SCCCCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888887 3444445555554
No 4
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=9.72 E-value=68 Score=18.17 Aligned_cols=19 Identities=5% Similarity=-0.068 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026254 9 VLIPTGLLVMGVYHIWLLY 27 (241)
Q Consensus 9 ~av~~~l~~~~~Yh~~l~~ 27 (241)
+.+..|+.||.=||.....
T Consensus 10 ~vv~~F~icW~P~~i~~~~ 28 (33)
T 2ki9_A 10 LVLAVLLICWFPVLALMAH 28 (33)
T ss_dssp HHHHHHTTTSSHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 4566899999999987643
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=8.35 E-value=2.6e+02 Score=17.51 Aligned_cols=15 Identities=0% Similarity=0.067 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhcCh
Q 026254 201 CTMSFILYFLDTTSS 215 (241)
Q Consensus 201 v~vV~vLy~rdf~S~ 215 (241)
.+++.+||...|..+
T Consensus 25 ~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 25 TILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHcCcccC
Confidence 357788999888765
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=7.98 E-value=2.5e+02 Score=17.02 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=10.0
Q ss_pred HhhHHHHHHHHHHHHHHHHh
Q 026254 191 FGPIPMFVCCCTMSFILYFL 210 (241)
Q Consensus 191 ~gP~~l~~~tv~vV~vLy~r 210 (241)
+|+++-++.....++.+|||
T Consensus 18 vG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHeec
Confidence 45555444444455555554
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=7.89 E-value=8.5e+02 Score=20.41 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHh-H---hhHHHHHHHHHHHH
Q 026254 158 YIEYVARNLNRG-SFFWSLGLRAFYLSFPLFLWI-F---GPIPMFVCCCTMSF 205 (241)
Q Consensus 158 ~~~~v~~~l~ra-~~~~n~GlRa~Yfal~ll~W~-~---gP~~l~~~tv~vV~ 205 (241)
+.+......+.| .-....|+=-|-.-++++.|. | ++.+-..+|++++.
T Consensus 104 PH~r~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~aa~~~t~vliP 156 (214)
T 4hkr_A 104 PHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIP 156 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcHHHHHHHHHHHH
Confidence 444455555654 344568999999999999998 4 44455555655443
No 8
>3rfr_J PMOA; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_B
Probab=7.63 E-value=2.1e+02 Score=24.85 Aligned_cols=24 Identities=29% Similarity=0.575 Sum_probs=17.9
Q ss_pred chhHHHHH-HHHHHHHHHHHHHHhh
Q 026254 5 KLDYVLIP-TGLLVMGVYHIWLLYT 28 (241)
Q Consensus 5 ~lD~~av~-~~l~~~~~Yh~~l~~~ 28 (241)
..|++.++ +++++..+||+-....
T Consensus 25 ~~d~~~~~~~~~~~~g~~hih~mL~ 49 (252)
T 3rfr_J 25 TTDWMLLVLLFFAVLGGYHVHFMLT 49 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46877766 7888899999866543
No 9
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=6.62 E-value=2.9e+02 Score=15.37 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhcC
Q 026254 40 LNAESRHQWVHSIMTD 55 (241)
Q Consensus 40 ~~~~~R~~W~~~m~~r 55 (241)
+..-.|+-|.++++++
T Consensus 4 ~Q~~rRr~wL~~ll~~ 19 (24)
T 3h3g_B 4 IQDLRRRFFLHHLIAE 19 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456799999999874
No 10
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=6.15 E-value=96 Score=21.21 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 026254 5 KLDYVLIPTGLLVMGVYHIWLLYTILRFP 33 (241)
Q Consensus 5 ~lD~~av~~~l~~~~~Yh~~l~~~~~~~p 33 (241)
++|++++|. +...+|..+|-.+|.++..
T Consensus 31 wLd~vl~P~-l~~figl~~Y~~~r~~~~~ 58 (61)
T 2h3o_A 31 YLDYVLLPA-LAIFIGLTIYAIQRKRQAD 58 (61)
T ss_dssp HSSSSCCTT-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhhc
Confidence 456555552 1122255555555555543
Done!