Query 026254
Match_columns 241
No_of_seqs 105 out of 291
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 09:13:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 15.8 28 0.0021 20.0 1.3 23 185-207 8-30 (38)
2 d1a9xa4 c.30.1.1 (A:556-676) C 4.9 4.4E+02 0.032 18.2 4.6 41 128-168 25-77 (121)
3 d1unla_ d.144.1.7 (A:) Cyclin- 4.5 1.4E+02 0.01 22.4 1.5 24 46-69 260-283 (292)
4 d2a5yb1 a.4.5.80 (B:386-543) C 4.4 95 0.0069 22.2 0.3 12 60-71 81-92 (158)
5 d2p0ta1 a.290.1.1 (A:22-169) U 4.3 1.9E+02 0.014 20.9 2.0 32 44-75 83-122 (148)
6 d1a9xa3 c.30.1.1 (A:1-127) Car 4.3 4.1E+02 0.03 18.4 4.0 41 128-168 28-80 (127)
7 d1wi1a_ b.55.1.1 (A:) Calcium- 3.7 1.8E+02 0.013 18.7 1.5 19 36-54 89-107 (126)
8 d1kyqa2 e.37.1.1 (A:151-273) B 3.6 2.1E+02 0.016 19.9 1.8 13 42-54 67-79 (123)
9 d1ob3a_ d.144.1.7 (A:) Cyclin- 3.5 2.5E+02 0.018 21.0 2.3 24 46-69 258-281 (286)
10 d1ntya2 b.55.1.1 (A:1415-1535) 3.5 1.7E+02 0.012 19.3 1.0 20 35-54 96-115 (121)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=15.77 E-value=28 Score=19.97 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=12.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHH
Q 026254 185 PLFLWIFGPIPMFVCCCTMSFIL 207 (241)
Q Consensus 185 ~ll~W~~gP~~l~~~tv~vV~vL 207 (241)
.++-|++-|+.-.+.-.++...|
T Consensus 8 syLPwI~iPvv~wl~p~vvMglL 30 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMPTVVMGLL 30 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHH
Confidence 45567777765544444444333
No 2
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=4.87 E-value=4.4e+02 Score=18.16 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhhhhheeccC-CCC----CC-------CcchHHHHHHHHHH
Q 026254 128 VAFLCNVQSIRYYDHVSFLVTL-PTS----KG-------NTNYIEYVARNLNR 168 (241)
Q Consensus 128 ~AFf~F~ws~R~~n~~~~Li~~-P~~----~~-------~~~~~~~v~~~l~r 168 (241)
|+-..-.+++|--+|-.+|||. |.. .+ ++.+.+.+.++.++
T Consensus 25 y~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~~Ii~~ 77 (121)
T d1a9xa4 25 YCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRI 77 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHHHHHHH
Confidence 6666788999999999999998 741 11 46688888777664
No 3
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.45 E-value=1.4e+02 Score=22.44 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCCCcchHHHHHhh
Q 026254 46 HQWVHSIMTDPLKNGTLAVQTIRN 69 (241)
Q Consensus 46 ~~W~~~m~~r~~~~~ildvq~Lrn 69 (241)
++.+++|++.++++|+-+.|+|++
T Consensus 260 ~dll~~mL~~dP~~R~sa~e~L~H 283 (292)
T d1unla_ 260 RDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHccCChhHCcCHHHHhcC
Confidence 357999999999999999988875
No 4
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.39 E-value=95 Score=22.18 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=10.0
Q ss_pred cchHHHHHhhhH
Q 026254 60 GTLAVQTIRNNI 71 (241)
Q Consensus 60 ~ildvq~Lrn~~ 71 (241)
.+.|+||+.|.+
T Consensus 81 hvvd~qtiangi 92 (158)
T d2a5yb1 81 HVVDAQTIANGI 92 (158)
T ss_dssp TTSCTHHHHHHH
T ss_pred HHhhHHHHhhhH
Confidence 489999999865
No 5
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=4.29 E-value=1.9e+02 Score=20.86 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCC--------CCcchHHHHHhhhHHHHH
Q 026254 44 SRHQWVHSIMTDPL--------KNGTLAVQTIRNNIMAST 75 (241)
Q Consensus 44 ~R~~W~~~m~~r~~--------~~~ildvq~Lrn~~~~~t 75 (241)
.=+.|-++++..+. ...-.|.|.||++++.+.
T Consensus 83 ~lE~wRdrLi~~~~~al~e~~~~~P~~DrQ~LRqLiR~A~ 122 (148)
T d2p0ta1 83 NLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQ 122 (148)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCcchHHHHHHHHHHHHH
Confidence 44678888887543 122479999999998754
No 6
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=4.29 E-value=4.1e+02 Score=18.45 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhhhhhhheeccC-CCC----C---C----CcchHHHHHHHHHH
Q 026254 128 VAFLCNVQSIRYYDHVSFLVTL-PTS----K---G----NTNYIEYVARNLNR 168 (241)
Q Consensus 128 ~AFf~F~ws~R~~n~~~~Li~~-P~~----~---~----~~~~~~~v~~~l~r 168 (241)
|+-..-.+++|-.+|-.+|||. |.. . + ++.+.+.+.+++++
T Consensus 28 y~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~~Ii~~ 80 (127)
T d1a9xa3 28 YSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK 80 (127)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHHHHHHH
Confidence 6666778899999999999998 652 1 1 46788888877774
No 7
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.69 E-value=1.8e+02 Score=18.70 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.7
Q ss_pred cHhHHHHHHHHHHHHHHhc
Q 026254 36 SVIGLNAESRHQWVHSIMT 54 (241)
Q Consensus 36 t~~g~~~~~R~~W~~~m~~ 54 (241)
.+..-..+.|.+||+.+.+
T Consensus 89 ~f~A~s~~e~~~Wv~al~~ 107 (126)
T d1wi1a_ 89 IFASDDEQDRILWVQAMYR 107 (126)
T ss_dssp EEECSSHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 4445678999999998864
No 8
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.59 E-value=2.1e+02 Score=19.95 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhc
Q 026254 42 AESRHQWVHSIMT 54 (241)
Q Consensus 42 ~~~R~~W~~~m~~ 54 (241)
...|..|+.++++
T Consensus 67 ~~~Rm~W~~qi~e 79 (123)
T d1kyqa2 67 VKYRMDWARRCTD 79 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 5689999999987
No 9
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}
Probab=3.52 E-value=2.5e+02 Score=20.98 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCCCCcchHHHHHhh
Q 026254 46 HQWVHSIMTDPLKNGTLAVQTIRN 69 (241)
Q Consensus 46 ~~W~~~m~~r~~~~~ildvq~Lrn 69 (241)
++.++.|++.++++|.-+.|.|.+
T Consensus 258 ~dli~~~L~~dP~~R~s~~ell~H 281 (286)
T d1ob3a_ 258 IDLLSKMLKLDPNQRITAKQALEH 281 (286)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHccCChhHCcCHHHHhcC
Confidence 478999999999999998888764
No 10
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.48 E-value=1.7e+02 Score=19.26 Aligned_cols=20 Identities=15% Similarity=0.401 Sum_probs=15.1
Q ss_pred CcHhHHHHHHHHHHHHHHhc
Q 026254 35 RSVIGLNAESRHQWVHSIMT 54 (241)
Q Consensus 35 ~t~~g~~~~~R~~W~~~m~~ 54 (241)
.++..-+...|..||+++-+
T Consensus 96 ~~l~a~s~~eK~~W~~~I~~ 115 (121)
T d1ntya2 96 IVLKASSIENKQDWIKHIRE 115 (121)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHH
Confidence 45555688999999998753
Done!