BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026255
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 22 VSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXX 81
++S V G + S T ++ G MM + ++L+G I P I ++
Sbjct: 612 ITSRVYGGHT-SPTFDNNGSMMFLDMSYNMLSGYI----------PKEIGSMPYLFILNL 660
Query: 82 XXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
IP +G+L L LDLS+NK GRIPQ + LT L ++S+N L+GPIP+
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 142 KQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESL----FSGA 190
QF TF F N GLCG PL + C+ A H L F GA
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENLYFQGA 772
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 43/92 (46%)
Query: 50 DILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNK 109
+ L + L NN F IP ++SN IPS LG+L+ L L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
G IPQ+L+ + LE + N LTG IP G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%)
Query: 52 LTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFS 111
L +IL N IP+ +SN IP +G L NL L LSNN FS
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP 139
G IP +L + L + +++ N G IP
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 60 NRFDEAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 119
N + IP + +K IPS L N TNL + LSNN+ +G IP+ +
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 120 ELTFLEFFNVSDNYLTGPIP 139
L L +S+N +G IP
Sbjct: 509 RLENLAILKLSNNSFSGNIP 528
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
LG+ + L+ LD+S NK SG + + T L+ N+S N GPIP
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 50 DILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIP-SCLGNLTNLESLDLSNN 108
D LTG+ LS N F A+P + +P L + L+ LDLS N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 109 KFSGRIPQQLVELTF-LEFFNVSDNYLTGPI 138
+FSG +P+ L L+ L ++S N +GPI
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 57 LSNNRFDEAIPASISNLKXXXXXXXXXXXXXX--XIPSCLGNLTN-LESLDLSNNKFSGR 113
LS N F +P S++NL +P+ N N L+ L L NN F+G+
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 114 IPQQLVELTFLEFFNVSDNYLTGPIP 139
IP L + L ++S NYL+G IP
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIP 432
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 16/156 (10%)
Query: 22 VSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXX 81
++S V G + S T ++ G MM + ++L+G I P I ++
Sbjct: 615 ITSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYI----------PKEIGSMPYLFILNL 663
Query: 82 XXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
IP +G+L L LDLS+NK GRIPQ + LT L ++S+N L+GPIP+
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Query: 142 KQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNED 177
QF TF F N GLCG PL + C+ P+N D
Sbjct: 724 GQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 43/92 (46%)
Query: 50 DILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNK 109
+ L + L NN F IP ++SN IPS LG+L+ L L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
G IPQ+L+ + LE + N LTG IP G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%)
Query: 52 LTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFS 111
L +IL N IP+ +SN IP +G L NL L LSNN FS
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
G IP +L + L + +++ N G IP
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 60 NRFDEAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 119
N + IP + +K IPS L N TNL + LSNN+ +G IP+ +
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 120 ELTFLEFFNVSDNYLTGPIP 139
L L +S+N +G IP
Sbjct: 512 RLENLAILKLSNNSFSGNIP 531
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
LG+ + L+ LD+S NK SG + + T L+ N+S N GPIP
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 50 DILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIP-SCLGNLTNLESLDLSNN 108
D LTG+ LS N F A+P + +P L + L+ LDLS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 109 KFSGRIPQQLVELTF-LEFFNVSDNYLTGPI 138
+FSG +P+ L L+ L ++S N +GPI
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 57 LSNNRFDEAIPASISNLKXXXXXXXXXXXXXX--XIPSCLGNLTN-LESLDLSNNKFSGR 113
LS N F +P S++NL +P+ N N L+ L L NN F+G+
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 114 IPQQLVELTFLEFFNVSDNYLTGPIP 139
IP L + L ++S NYL+G IP
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIP 435
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 38/65 (58%)
Query: 99 NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158
NL LDL NN+ G +PQ L +L FL NVS N L G IPQG FD +++ N L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 159 CGRPL 163
CG PL
Sbjct: 305 CGSPL 309
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 30/80 (37%)
Query: 60 NRFDEAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 119
N IP +I+ L IP L + L +LD S N SG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 120 ELTFLEFFNVSDNYLTGPIP 139
L L N ++G IP
Sbjct: 147 SLPNLVGITFDGNRISGAIP 166
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 90 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFD 148
IP + LT L L +++ SG IP L ++ L + S N L+G +P
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 149 NTSFDAN 155
+FD N
Sbjct: 153 GITFDGN 159
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 90 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
+P+ + NL+NL LDLS+N+ + +P +L L++F DN +T +P +F N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPW--EFGNLCN 317
Query: 150 TSFDANSGLCGRPLSK 165
F G+ G PL K
Sbjct: 318 LQF---LGVEGNPLEK 330
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 50 DILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXI-PSCLGNLTNLESLDLSNN 108
++L ++LS N FD+ S +N + CL L NL++LDLS+N
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHN 357
Query: 109 KF--SGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 147
S QL L+ L+ N+S N P G Q F
Sbjct: 358 DIEASDCCSLQLKNLSHLQTLNLSHNE-----PLGLQSQAF 393
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD 153
L NLT LE LD+S+NK S L +LT LE ++N ++ P G D S +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 225
Query: 154 AN 155
N
Sbjct: 226 GN 227
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 93 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126
L +LTNL LDL+NN+ S P L +LT L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
L NLT LE LD+S+NK S L +LT LE ++N ++ P G
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 214
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 93 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126
L +LTNL LDL+NN+ S P L +LT L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
L NLT LE LD+S+NK S L +LT LE ++N ++ P G
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 214
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 93 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126
L +LTNL LDL+NN+ S P L +LT L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD 153
L NLT LE LD+S+NK S L +LT LE ++N ++ P G D S +
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 229
Query: 154 AN 155
N
Sbjct: 230 GN 231
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 93 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126
L +LTNL LDL+NN+ S P L +LT L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 100 LESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG--KQFATFDNTSFDANSG 157
++ LDL +NK IP+Q+V+L L+ NV+ N L +P G + + N
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 480
Query: 158 LCGRP 162
C P
Sbjct: 481 DCSCP 485
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD 153
L NLT LE LD+S+NK S L +LT LE ++N ++ P G D S +
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 228
Query: 154 AN 155
N
Sbjct: 229 GN 230
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 93 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126
L +LTNL LDL+NN+ S P L +LT L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD 153
L NLT LE LD+S+NK S L +LT LE ++N ++ P G D S +
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 224
Query: 154 AN 155
N
Sbjct: 225 GN 226
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 93 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126
L +LTNL LDL+NN+ S P L +LT L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
L NLT LE LD+S+NK S L +LT LE ++N ++ P G
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLG 213
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 93 CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126
L +LTNL LDL+NN+ S P L +LT L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 124 LEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRP 162
LE NV DNYLT +P+ Q TF + S + SGL P
Sbjct: 259 LEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELP 296
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 52 LTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIPS-CLGNLTNLESLDLSNNKF 110
L ++LS N+F+ S SN + + CL NL NL LDLS++
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 111 --SGRIPQQLVELTFLEFFNVSDN 132
S QL L+ L+ N+S N
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYN 386
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 90 IPSCLGNLTNLESLDLSNNK 109
+P NLTNLE LDLS+NK
Sbjct: 165 LPEYFSNLTNLEHLDLSSNK 184
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 90 IPSCLGNLTNLESLDLSNNK 109
+P NLTNLE LDLS+NK
Sbjct: 141 LPEYFSNLTNLEHLDLSSNK 160
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 90 IPSCLGNLTNLESLDLSNNK 109
+P NLTNLE LDLS+NK
Sbjct: 141 LPEYFSNLTNLEHLDLSSNK 160
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 90 IPSCLGNLTNLESLDLSNNKF 110
+P NLTNLE LDLS+NK
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 90 IPSCLGNLTNLESLDLSNNKF 110
+P NLTNLE LDLS+NK
Sbjct: 142 LPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 90 IPSCLGNLTNLESLDLSNNKF 110
+P NLTNLE LDLS+NK
Sbjct: 142 LPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 90 IPSCLGNLTNLESLDLSNNKF 110
+P NLTNLE LDLS+NK
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 90 IPSCLGNLTNLESLDLSNNKF 110
+P NLTNLE LDLS+NK
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKI 163
>pdb|1K0O|A Chain A, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0O|B Chain B, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0N|A Chain A, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0N|B Chain B, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0M|A Chain A, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
pdb|1K0M|B Chain B, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
Length = 241
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 119 VELTFLEFFNVSDNYLTGPIPQG 141
+E L+ V DNYLT P+P+G
Sbjct: 129 LEKGLLKALKVLDNYLTSPLPEG 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,247,329
Number of Sequences: 62578
Number of extensions: 228510
Number of successful extensions: 561
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 79
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)