Query 026255
Match_columns 241
No_of_seqs 333 out of 2636
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 9.6E-20 2.1E-24 168.6 11.2 118 51-168 419-538 (623)
2 PLN00113 leucine-rich repeat r 99.8 3.4E-18 7.4E-23 166.1 12.9 114 49-162 498-611 (968)
3 PLN00113 leucine-rich repeat r 99.7 7.7E-16 1.7E-20 149.7 14.3 115 49-163 474-589 (968)
4 KOG4194 Membrane glycoprotein 99.4 6.3E-14 1.4E-18 124.2 -0.5 160 5-164 288-458 (873)
5 PLN03150 hypothetical protein; 99.3 1.1E-11 2.3E-16 115.3 11.0 91 49-139 441-532 (623)
6 KOG4194 Membrane glycoprotein 99.3 6.2E-13 1.3E-17 118.0 -0.8 108 49-156 292-403 (873)
7 KOG0617 Ras suppressor protein 99.2 1.1E-12 2.4E-17 100.4 -0.5 108 49-158 55-163 (264)
8 KOG0617 Ras suppressor protein 99.2 1.2E-12 2.5E-17 100.2 -3.7 106 49-157 78-185 (264)
9 KOG0472 Leucine-rich repeat pr 99.1 3.9E-12 8.4E-17 108.6 -4.0 104 49-157 205-309 (565)
10 PF13855 LRR_8: Leucine rich r 99.1 9.8E-11 2.1E-15 75.5 2.6 60 51-110 2-61 (61)
11 KOG4237 Extracellular matrix p 99.0 4.3E-11 9.3E-16 102.0 0.7 133 32-164 49-207 (498)
12 PF14580 LRR_9: Leucine-rich r 99.0 3.1E-10 6.7E-15 88.6 5.1 102 50-157 19-125 (175)
13 KOG0444 Cytoskeletal regulator 99.0 6.6E-11 1.4E-15 106.3 0.4 35 52-87 105-139 (1255)
14 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.9E-15 74.3 1.9 61 74-134 1-61 (61)
15 KOG0444 Cytoskeletal regulator 99.0 5.3E-11 1.1E-15 106.9 -1.4 107 49-157 77-185 (1255)
16 PF14580 LRR_9: Leucine-rich r 99.0 5.5E-10 1.2E-14 87.2 4.4 114 3-136 12-127 (175)
17 KOG0618 Serine/threonine phosp 98.9 1E-10 2.2E-15 108.7 -0.7 107 49-158 382-489 (1081)
18 PRK15387 E3 ubiquitin-protein 98.9 3E-09 6.6E-14 100.1 7.0 80 50-138 382-461 (788)
19 KOG0472 Leucine-rich repeat pr 98.9 7.1E-10 1.5E-14 95.0 1.7 108 49-158 434-541 (565)
20 PRK15387 E3 ubiquitin-protein 98.9 7E-09 1.5E-13 97.7 8.0 139 10-159 302-459 (788)
21 KOG0618 Serine/threonine phosp 98.8 3.2E-10 6.9E-15 105.5 -3.6 147 7-156 307-463 (1081)
22 PRK15370 E3 ubiquitin-protein 98.8 1E-08 2.2E-13 96.7 6.2 53 99-156 326-378 (754)
23 PRK15370 E3 ubiquitin-protein 98.8 6.2E-09 1.4E-13 98.1 4.7 99 49-157 324-427 (754)
24 KOG4237 Extracellular matrix p 98.7 1.5E-08 3.2E-13 86.8 3.8 96 68-163 268-364 (498)
25 PLN03210 Resistant to P. syrin 98.6 1.8E-07 3.9E-12 92.9 11.1 108 49-158 610-717 (1153)
26 KOG0532 Leucine-rich repeat (L 98.6 5.2E-09 1.1E-13 93.1 -0.4 126 6-136 117-248 (722)
27 KOG1259 Nischarin, modulator o 98.6 1.1E-08 2.5E-13 84.9 0.5 104 49-157 306-411 (490)
28 KOG1259 Nischarin, modulator o 98.6 1.4E-08 3.1E-13 84.3 0.4 102 50-156 284-385 (490)
29 PLN03210 Resistant to P. syrin 98.4 8.9E-07 1.9E-11 88.1 9.8 89 49-139 633-721 (1153)
30 KOG4579 Leucine-rich repeat (L 98.4 4E-08 8.6E-13 72.8 -0.2 88 51-141 54-141 (177)
31 KOG1859 Leucine-rich repeat pr 98.4 1E-08 2.2E-13 93.7 -4.4 109 47-160 184-294 (1096)
32 cd00116 LRR_RI Leucine-rich re 98.4 1.5E-07 3.3E-12 80.1 2.9 86 50-135 137-234 (319)
33 COG4886 Leucine-rich repeat (L 98.4 1.8E-07 3.8E-12 82.5 2.6 81 51-134 141-221 (394)
34 COG4886 Leucine-rich repeat (L 98.4 2.8E-07 6.1E-12 81.2 3.6 144 11-158 141-290 (394)
35 cd00116 LRR_RI Leucine-rich re 98.3 7.8E-08 1.7E-12 81.9 -1.0 88 49-136 80-179 (319)
36 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.2E-11 52.6 2.9 36 51-87 2-37 (44)
37 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.6E-11 51.7 3.4 40 74-115 1-40 (44)
38 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.3E-12 70.6 -2.3 93 45-140 72-164 (177)
39 KOG0532 Leucine-rich repeat (L 98.2 2.1E-07 4.6E-12 83.1 -1.0 105 49-158 120-247 (722)
40 KOG3207 Beta-tubulin folding c 98.1 9.4E-07 2E-11 76.7 1.2 127 6-135 168-314 (505)
41 KOG4658 Apoptotic ATPase [Sign 98.0 7.2E-06 1.6E-10 78.9 5.7 86 49-135 544-631 (889)
42 KOG0531 Protein phosphatase 1, 97.9 4.1E-06 9E-11 74.5 0.7 83 48-135 116-199 (414)
43 KOG0531 Protein phosphatase 1, 97.8 5.1E-06 1.1E-10 73.9 1.0 105 47-156 92-197 (414)
44 KOG4658 Apoptotic ATPase [Sign 97.8 2.4E-05 5.2E-10 75.4 4.0 90 43-133 564-653 (889)
45 KOG1644 U2-associated snRNP A' 97.7 8.2E-05 1.8E-09 58.8 5.1 103 49-154 41-149 (233)
46 KOG3207 Beta-tubulin folding c 97.6 2.3E-05 4.9E-10 68.4 1.2 107 49-156 196-312 (505)
47 KOG1859 Leucine-rich repeat pr 97.5 5.6E-06 1.2E-10 76.3 -4.3 99 51-155 165-264 (1096)
48 KOG1644 U2-associated snRNP A' 97.4 0.00017 3.7E-09 57.0 3.8 81 74-156 42-124 (233)
49 PRK15386 type III secretion pr 97.1 0.0015 3.3E-08 57.6 6.7 12 123-134 157-168 (426)
50 KOG2982 Uncharacterized conser 96.7 0.00044 9.5E-09 58.0 0.5 92 44-135 65-159 (418)
51 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.3E-08 54.4 2.4 41 71-111 62-104 (260)
52 KOG2739 Leucine-rich acidic nu 96.6 0.0019 4.2E-08 52.9 3.2 87 66-154 35-125 (260)
53 KOG3665 ZYG-1-like serine/thre 96.6 0.0027 5.8E-08 60.0 4.5 61 49-111 172-233 (699)
54 PRK15386 type III secretion pr 96.4 0.0057 1.2E-07 54.0 5.4 77 47-133 91-188 (426)
55 KOG2123 Uncharacterized conser 96.1 0.00079 1.7E-08 55.9 -1.4 77 49-128 40-123 (388)
56 KOG1909 Ran GTPase-activating 96.1 0.0015 3.3E-08 55.7 -0.1 109 49-157 184-310 (382)
57 PF00560 LRR_1: Leucine Rich R 95.9 0.0026 5.7E-08 31.8 0.3 10 53-62 3-12 (22)
58 PF00560 LRR_1: Leucine Rich R 95.8 0.0039 8.4E-08 31.1 0.8 22 75-97 1-22 (22)
59 KOG1909 Ran GTPase-activating 95.1 0.018 3.9E-07 49.3 3.0 108 49-156 156-281 (382)
60 KOG3665 ZYG-1-like serine/thre 95.1 0.017 3.6E-07 54.8 3.0 90 44-135 142-233 (699)
61 KOG2123 Uncharacterized conser 94.9 0.0032 6.9E-08 52.5 -2.0 86 49-139 18-105 (388)
62 KOG0473 Leucine-rich repeat pr 94.6 0.00062 1.3E-08 55.2 -6.6 83 50-135 42-124 (326)
63 PF13504 LRR_7: Leucine rich r 94.3 0.024 5.2E-07 26.3 1.0 11 100-110 3-13 (17)
64 COG5238 RNA1 Ran GTPase-activa 93.0 0.046 9.9E-07 45.6 1.3 86 49-135 29-133 (388)
65 PF13306 LRR_5: Leucine rich r 92.9 0.18 3.9E-06 36.6 4.3 80 50-132 12-91 (129)
66 COG5238 RNA1 Ran GTPase-activa 92.7 0.2 4.3E-06 41.9 4.5 86 49-135 91-198 (388)
67 smart00369 LRR_TYP Leucine-ric 92.3 0.14 3.1E-06 26.3 2.2 15 51-65 3-17 (26)
68 smart00370 LRR Leucine-rich re 92.3 0.14 3.1E-06 26.3 2.2 15 51-65 3-17 (26)
69 KOG2982 Uncharacterized conser 92.2 0.045 9.8E-07 46.2 0.2 63 49-111 96-159 (418)
70 KOG0473 Leucine-rich repeat pr 91.8 0.0092 2E-07 48.6 -4.1 92 63-156 31-122 (326)
71 smart00370 LRR Leucine-rich re 91.6 0.19 4.1E-06 25.8 2.2 14 98-111 2-15 (26)
72 smart00369 LRR_TYP Leucine-ric 91.6 0.19 4.1E-06 25.8 2.2 14 98-111 2-15 (26)
73 KOG2120 SCF ubiquitin ligase, 91.2 0.032 6.9E-07 47.1 -1.7 122 8-131 232-372 (419)
74 PF13306 LRR_5: Leucine rich r 90.5 0.31 6.7E-06 35.3 3.2 79 49-131 34-112 (129)
75 PF13516 LRR_6: Leucine Rich r 86.5 0.14 3E-06 25.8 -0.7 13 99-111 3-15 (24)
76 KOG2120 SCF ubiquitin ligase, 84.9 0.1 2.2E-06 44.1 -2.5 86 51-136 186-274 (419)
77 smart00364 LRR_BAC Leucine-ric 84.3 0.63 1.4E-05 24.2 1.2 17 99-116 3-19 (26)
78 smart00365 LRR_SD22 Leucine-ri 81.1 1.3 2.9E-05 22.9 1.7 14 50-63 2-15 (26)
79 PF01102 Glycophorin_A: Glycop 81.0 2.1 4.6E-05 31.3 3.3 16 197-212 66-81 (122)
80 KOG3864 Uncharacterized conser 77.3 0.71 1.5E-05 36.9 -0.1 81 51-131 102-185 (221)
81 PF15179 Myc_target_1: Myc tar 76.2 2.8 6.1E-05 32.6 2.8 37 190-227 15-51 (197)
82 PF02439 Adeno_E3_CR2: Adenovi 75.1 3.3 7.1E-05 23.5 2.2 17 198-214 6-22 (38)
83 TIGR00864 PCC polycystin catio 73.2 2 4.3E-05 46.4 1.8 32 104-135 1-32 (2740)
84 smart00368 LRR_RI Leucine rich 72.2 3.1 6.8E-05 21.7 1.6 12 100-111 4-15 (28)
85 PF01102 Glycophorin_A: Glycop 72.1 2.2 4.8E-05 31.2 1.3 32 195-226 60-91 (122)
86 PF08374 Protocadherin: Protoc 67.4 5.7 0.00012 31.9 2.8 24 193-216 36-59 (221)
87 PF04478 Mid2: Mid2 like cell 62.1 4.8 0.0001 30.5 1.5 17 195-211 49-65 (154)
88 KOG1947 Leucine rich repeat pr 61.1 8 0.00017 34.5 3.0 61 72-132 241-305 (482)
89 PF08693 SKG6: Transmembrane a 59.6 9.1 0.0002 22.1 2.0 9 194-202 11-19 (40)
90 PF01034 Syndecan: Syndecan do 57.4 3.4 7.4E-05 26.4 -0.0 6 202-207 16-21 (64)
91 TIGR00864 PCC polycystin catio 55.4 8.9 0.00019 41.9 2.5 32 56-87 1-32 (2740)
92 COG3216 Uncharacterized protei 51.8 10 0.00022 29.5 1.7 42 191-232 133-174 (184)
93 PF04478 Mid2: Mid2 like cell 51.0 19 0.00041 27.4 3.0 24 192-215 50-73 (154)
94 PF11346 DUF3149: Protein of u 49.4 32 0.0007 20.0 3.2 19 209-227 20-38 (42)
95 PF15050 SCIMP: SCIMP protein 49.4 17 0.00036 26.4 2.4 26 205-231 18-43 (133)
96 PF10873 DUF2668: Protein of u 47.8 14 0.00029 27.8 1.8 6 199-204 65-70 (155)
97 PTZ00046 rifin; Provisional 47.6 18 0.0004 31.5 2.8 15 217-231 335-349 (358)
98 PF01708 Gemini_mov: Geminivir 47.6 14 0.00029 25.4 1.6 18 209-226 45-62 (91)
99 TIGR01477 RIFIN variant surfac 44.8 22 0.00047 30.9 2.9 14 217-230 330-343 (353)
100 KOG3763 mRNA export factor TAP 44.8 14 0.0003 34.1 1.8 60 97-157 217-282 (585)
101 PF05393 Hum_adeno_E3A: Human 44.5 30 0.00066 23.6 2.9 12 214-225 48-59 (94)
102 KOG4308 LRR-containing protein 43.5 1.9 4.2E-05 39.2 -3.9 38 98-135 262-303 (478)
103 KOG3763 mRNA export factor TAP 42.3 13 0.00028 34.3 1.2 62 50-113 218-285 (585)
104 PF03302 VSP: Giardia variant- 40.3 20 0.00044 31.8 2.1 15 200-214 374-388 (397)
105 PF06305 DUF1049: Protein of u 39.2 27 0.00059 22.1 2.1 15 200-214 24-38 (68)
106 PF02009 Rifin_STEVOR: Rifin/s 38.8 18 0.0004 30.8 1.5 9 217-225 279-287 (299)
107 PF08374 Protocadherin: Protoc 38.3 20 0.00042 28.9 1.5 23 193-215 39-61 (221)
108 PF07204 Orthoreo_P10: Orthore 38.3 25 0.00055 24.3 1.8 23 192-216 41-63 (98)
109 PF04277 OAD_gamma: Oxaloaceta 37.7 38 0.00082 22.3 2.7 21 202-222 12-32 (79)
110 PF05399 EVI2A: Ectropic viral 36.6 52 0.0011 26.4 3.6 10 223-232 158-167 (227)
111 PHA03265 envelope glycoprotein 36.4 36 0.00078 29.6 2.9 24 192-215 346-369 (402)
112 COG3105 Uncharacterized protei 35.4 32 0.00068 25.4 2.1 21 200-220 11-31 (138)
113 PF05568 ASFV_J13L: African sw 34.6 51 0.0011 24.8 3.1 11 216-226 46-56 (189)
114 PRK11677 hypothetical protein; 34.4 28 0.0006 25.9 1.7 19 200-218 6-24 (134)
115 PF06295 DUF1043: Protein of u 34.0 31 0.00067 25.4 1.9 18 201-218 3-20 (128)
116 PF05725 FNIP: FNIP Repeat; I 32.5 72 0.0016 18.3 3.0 14 46-59 8-21 (44)
117 KOG1947 Leucine rich repeat pr 32.3 33 0.00072 30.4 2.2 85 49-133 187-280 (482)
118 PF15069 FAM163: FAM163 family 31.1 91 0.002 23.4 3.9 31 202-232 10-40 (143)
119 PF03672 UPF0154: Uncharacteri 30.3 76 0.0017 20.3 3.0 13 202-214 5-17 (64)
120 PTZ00370 STEVOR; Provisional 30.3 57 0.0012 27.6 3.1 14 218-231 274-288 (296)
121 PF14851 FAM176: FAM176 family 30.1 22 0.00047 27.1 0.6 20 202-221 28-47 (153)
122 smart00367 LRR_CC Leucine-rich 25.2 50 0.0011 16.5 1.3 12 98-109 2-13 (26)
123 PF05624 LSR: Lipolysis stimul 25.0 88 0.0019 18.5 2.3 16 193-208 2-17 (49)
124 PF10577 UPF0560: Uncharacteri 24.6 65 0.0014 31.2 2.7 8 220-227 294-301 (807)
125 PF13120 DUF3974: Domain of un 23.5 17 0.00036 25.2 -1.0 9 228-236 35-43 (126)
126 PF12297 EVC2_like: Ellis van 22.2 1E+02 0.0022 27.5 3.3 17 197-213 67-83 (429)
127 PRK00523 hypothetical protein; 22.1 1.8E+02 0.0039 19.1 3.6 7 220-226 28-34 (72)
128 PF10854 DUF2649: Protein of u 22.0 1.6E+02 0.0034 18.6 3.2 24 202-225 38-61 (67)
129 PF10389 CoatB: Bacteriophage 22.0 1.5E+02 0.0032 17.7 3.0 18 206-223 26-43 (46)
130 PF11980 DUF3481: Domain of un 21.9 51 0.0011 22.3 1.1 18 192-209 15-32 (87)
131 PHA02902 putative IMV membrane 21.9 1.5E+02 0.0032 19.0 3.0 6 221-226 23-28 (70)
132 TIGR00985 3a0801s04tom mitocho 21.5 70 0.0015 24.3 1.9 17 200-216 11-27 (148)
133 PF06697 DUF1191: Protein of u 20.4 3.1E+02 0.0066 23.2 5.6 18 192-210 212-229 (278)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.81 E-value=9.6e-20 Score=168.55 Aligned_cols=118 Identities=40% Similarity=0.692 Sum_probs=106.8
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCc--cCccCcccccCCCCCCCCCCCCCCC
Q 026255 131 DNYLTGPIPQGKQ--FATFDNTSFDANSGLCGRPLSKGCE 168 (241)
Q Consensus 131 ~N~l~g~~p~~~~--~~~l~~~~~~~n~~lc~~~~~~~c~ 168 (241)
+|.++|.+|.... ...+..+++.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 2344577899999999987656664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=3.4e-18 Score=166.05 Aligned_cols=114 Identities=34% Similarity=0.565 Sum_probs=102.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|++++
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 56788899999999888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCCCCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~ 162 (241)
+++|++.|.+|...++.++....+.||+.+|+.+
T Consensus 578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999988888888888899999999754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.67 E-value=7.7e-16 Score=149.68 Aligned_cols=115 Identities=33% Similarity=0.516 Sum_probs=105.3
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
.++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL 163 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 163 (241)
+++|+++|.+|.. ..+..+..+++++|+..+..|.
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999875 4567788899999988765553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.37 E-value=6.3e-14 Score=124.20 Aligned_cols=160 Identities=19% Similarity=0.261 Sum_probs=115.4
Q ss_pred CCCCCccccccccCCCCcccccccce-----eEEEEEeecc---cccccCccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255 5 NTSELRYLQDVLFPYGQVSSNVLGTY-----DYSMTMNSKG---RMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGL 76 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L 76 (241)
-+-+|+.|+.+++++|.|++...... ...+.++.+. ++..-...+..|++|.|++|.|+..-...|..+++|
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 34567788888888888876554331 1122222222 222222336778888888888887777788888999
Q ss_pred ceEecccCcCCCCCcc---ccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCccccc
Q 026255 77 QVLNLHNNNLQGHIPS---CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD 153 (241)
Q Consensus 77 ~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~ 153 (241)
++|||++|.+++.+-+ .|.++++|+.|++.+|++...-..+|..+..|++|||.+|.+...-|....-..+..+.+.
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 9999999998876654 4778999999999999998444467889999999999999998666655443467777787
Q ss_pred CCCCCCCCCCC
Q 026255 154 ANSGLCGRPLS 164 (241)
Q Consensus 154 ~n~~lc~~~~~ 164 (241)
...++|+|.+.
T Consensus 448 SssflCDCql~ 458 (873)
T KOG4194|consen 448 SSSFLCDCQLK 458 (873)
T ss_pred ccceEEeccHH
Confidence 88889998543
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=1.1e-11 Score=115.25 Aligned_cols=91 Identities=38% Similarity=0.551 Sum_probs=82.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhc-cccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL-TFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L 127 (241)
+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999988764 466789
Q ss_pred eccCCcccCCCC
Q 026255 128 NVSDNYLTGPIP 139 (241)
Q Consensus 128 ~l~~N~l~g~~p 139 (241)
++.+|...+..|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999987654333
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.26 E-value=6.2e-13 Score=118.04 Aligned_cols=108 Identities=22% Similarity=0.222 Sum_probs=75.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
++.|+.|+|+.|.|..+-++.+...++|++|+|++|+++...+.+|..+..|++|+|++|+++..-...|..+.+|+.||
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 56677777777777777777777777777777777777766666677777777777777777744445666777777788
Q ss_pred ccCCcccCCCCCC----CccCccCcccccCCC
Q 026255 129 VSDNYLTGPIPQG----KQFATFDNTSFDANS 156 (241)
Q Consensus 129 l~~N~l~g~~p~~----~~~~~l~~~~~~~n~ 156 (241)
|++|.+++.+-+. ..++.+..+.+.||.
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 8888777665543 235566666666664
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=1.1e-12 Score=100.40 Aligned_cols=108 Identities=31% Similarity=0.429 Sum_probs=82.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L 127 (241)
+.+|+.|++.+|+|.. +|..++.++.|+.|++.-|++. .+|..|+.++.|+.||+..|++.. .+|..|..+..|+.|
T Consensus 55 l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence 5678888888888865 7778888888888888888888 888888888888888888888753 567777777888888
Q ss_pred eccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l 158 (241)
+++.|.|.-..|+..++..+..+.+..|..+
T Consensus 133 yl~dndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 133 YLGDNDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred HhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence 8888888744555566666666666655433
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.15 E-value=1.2e-12 Score=100.22 Aligned_cols=106 Identities=25% Similarity=0.409 Sum_probs=66.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCC-CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
++.|+.|+++-|.+. ..|..|+.++.|+.|||..|++. ..+|..|..+..|+.|+++.|.+. .+|..++.+++|+.|
T Consensus 78 l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 78 LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQIL 155 (264)
T ss_pred chhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEE
Confidence 556667777777764 36666777777777777777664 245666666666666666666666 566666666666666
Q ss_pred eccCCcccCCCCC-CCccCccCcccccCCCC
Q 026255 128 NVSDNYLTGPIPQ-GKQFATFDNTSFDANSG 157 (241)
Q Consensus 128 ~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~ 157 (241)
.+..|.+- .+|. ...+..+..+.++||..
T Consensus 156 ~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 156 SLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred eeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 66666665 3333 24445555566666643
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.08 E-value=3.9e-12 Score=108.61 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=85.4
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccC-CCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG-NLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+..|..|+|.+|+|.. .| +|.++..|..+++..|+++ .+|.+.. +++++.+||+..|++. +.|+.+.-+.+|..|
T Consensus 205 l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERL 280 (565)
T ss_pred hhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhh
Confidence 5566677777777754 44 6777777778888888877 6666655 7899999999999999 899999999999999
Q ss_pred eccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
|+++|.+++..+....+ .+..+.++|||.
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCch
Confidence 99999999777776666 888889999984
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=9.8e-11 Score=75.55 Aligned_cols=60 Identities=48% Similarity=0.649 Sum_probs=39.0
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcC
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 110 (241)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466667777766665556666666666666666666655555666666666666666654
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=4.3e-11 Score=102.01 Aligned_cols=133 Identities=22% Similarity=0.251 Sum_probs=104.3
Q ss_pred EEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccC-CcC
Q 026255 32 YSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN-NKF 110 (241)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l 110 (241)
..+.|..+++...+..+|+..++++|..|+|+.++|..|+.+++|+.|||++|.|+..-|+.|.++++|..|-+.+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 4578899999999999999999999999999999999999999999999999999999999999999987776655 899
Q ss_pred CCCCchhHhhccccceEeccCCcccCCC-----------------------CCC--CccCccCcccccCCCCCCCCCCC
Q 026255 111 SGRIPQQLVELTFLEFFNVSDNYLTGPI-----------------------PQG--KQFATFDNTSFDANSGLCGRPLS 164 (241)
Q Consensus 111 ~~~~p~~l~~l~~L~~L~l~~N~l~g~~-----------------------p~~--~~~~~l~~~~~~~n~~lc~~~~~ 164 (241)
+......|..+.+|+.|.+.-|++.... +.+ ..+..+..+.+..||+.|+|.+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 8544456777777777766666665321 111 12334455667778888877543
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=3.1e-10 Score=88.60 Aligned_cols=102 Identities=27% Similarity=0.399 Sum_probs=34.9
Q ss_pred cCccEEEccCCCCCccchhhhc-CCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhH-hhccccceE
Q 026255 50 DILTGIILSNNRFDEAIPASIS-NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL-VELTFLEFF 127 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L 127 (241)
..+++|+|++|.|+.+ +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+|+ .+.+.+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3578888888888763 2355 5778888888888888 454 3677888888888888888 454444 467888888
Q ss_pred eccCCcccCCCCCC---CccCccCcccccCCCC
Q 026255 128 NVSDNYLTGPIPQG---KQFATFDNTSFDANSG 157 (241)
Q Consensus 128 ~l~~N~l~g~~p~~---~~~~~l~~~~~~~n~~ 157 (241)
++++|++.. +-+. ..++.+..+++.|||.
T Consensus 94 ~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKISD-LNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS---S-CCCCGGGGG-TT--EEE-TT-GG
T ss_pred ECcCCcCCC-hHHhHHHHcCCCcceeeccCCcc
Confidence 888888863 2222 3456677778888875
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.00 E-value=6.6e-11 Score=106.29 Aligned_cols=35 Identities=40% Similarity=0.543 Sum_probs=13.7
Q ss_pred ccEEEccCCCCCccchhhhcCCCCCceEecccCcCC
Q 026255 52 LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ 87 (241)
Q Consensus 52 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~ 87 (241)
|+.||||+|++.. .|..+...+++-.|+||+|+|.
T Consensus 105 Lt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 105 LTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred ceeeecchhhhhh-cchhhhhhcCcEEEEcccCccc
Confidence 3444444444432 3333333333334444444433
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=1.8e-10 Score=74.27 Aligned_cols=61 Identities=39% Similarity=0.615 Sum_probs=55.5
Q ss_pred CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcc
Q 026255 74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYL 134 (241)
Q Consensus 74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 134 (241)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999966667899999999999999999977777899999999999999975
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.97 E-value=5.3e-11 Score=106.91 Aligned_cols=107 Identities=30% Similarity=0.459 Sum_probs=90.0
Q ss_pred CcCccEEEccCCCCCc-cchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh-Hhhccccce
Q 026255 49 PDILTGIILSNNRFDE-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~ 126 (241)
++.|+.+++.+|++.. -+|+.+-.+..|+.||||+|++. ..|..+....++-.|+||+|+|. .+|.. +.++.-|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 6678889999999842 26667778999999999999999 89999999999999999999998 67754 668889999
Q ss_pred EeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 127 FNVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 127 L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
||||+|++....|....+..+.++.+++||.
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 9999999997667666677777788888874
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=5.5e-10 Score=87.18 Aligned_cols=114 Identities=29% Similarity=0.309 Sum_probs=41.9
Q ss_pred CCCCCCCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255 3 IFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH 82 (241)
Q Consensus 3 ~~~~~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 82 (241)
+.+..|...+.++++..|+|+... ++ ...+.+|+.|+|++|.|+.. +.+..++.|+.|+++
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie-------------~L----~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIE-------------NL----GATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLS 72 (175)
T ss_dssp -------------------------------------S------TT-TT--EEE-TTS--S----TT----TT--EEE--
T ss_pred cccccccccccccccccccccccc-------------ch----hhhhcCCCEEECCCCCCccc--cCccChhhhhhcccC
Confidence 344555566677777777777322 11 11256799999999999874 347889999999999
Q ss_pred cCcCCCCCcccc-CCCCccceeeccCCcCCCCC-chhHhhccccceEeccCCcccC
Q 026255 83 NNNLQGHIPSCL-GNLTNLESLDLSNNKFSGRI-PQQLVELTFLEFFNVSDNYLTG 136 (241)
Q Consensus 83 ~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~g 136 (241)
+|.++ .++..+ ..+++|+.|++++|+|...- -..+..+++|+.|++.+|+++.
T Consensus 73 ~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 73 NNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99999 555444 46899999999999997421 1457789999999999999973
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.95 E-value=1e-10 Score=108.70 Aligned_cols=107 Identities=26% Similarity=0.409 Sum_probs=93.3
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
..+|+.|+|++|++...+...+.++..|+.|+||+|.++ .+|..+..+..|++|...+|++. .+| .+..++.|+.+|
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 578999999999998767777899999999999999999 89999999999999999999998 888 688999999999
Q ss_pred ccCCcccC-CCCCCCccCccCcccccCCCCC
Q 026255 129 VSDNYLTG-PIPQGKQFATFDNTSFDANSGL 158 (241)
Q Consensus 129 l~~N~l~g-~~p~~~~~~~l~~~~~~~n~~l 158 (241)
++.|+++. .+|....-+.+..+++.||.++
T Consensus 459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 99999974 3444433378899999999864
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.89 E-value=3e-09 Score=100.08 Aligned_cols=80 Identities=28% Similarity=0.409 Sum_probs=36.7
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 129 (241)
.+|+.|++++|.|++ +|.. .++|+.|++++|.++ .+|... .+|+.|++++|+++ .+|..+..+++|+.+++
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 344444444444443 2221 134444555555544 233321 23444555555554 45555555555555555
Q ss_pred cCCcccCCC
Q 026255 130 SDNYLTGPI 138 (241)
Q Consensus 130 ~~N~l~g~~ 138 (241)
++|+|++..
T Consensus 453 s~N~Ls~~~ 461 (788)
T PRK15387 453 EGNPLSERT 461 (788)
T ss_pred CCCCCCchH
Confidence 555555443
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.86 E-value=7.1e-10 Score=94.99 Aligned_cols=108 Identities=30% Similarity=0.381 Sum_probs=65.4
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|+|++|-+.. +|.+++.+-.|+.|+++.|+|. .+|..+..+..++.+-.++|++....|+.+..+.+|..||
T Consensus 434 l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 3444445555554433 4444444545555555555554 4444444444444444445555544444577788888899
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSGL 158 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l 158 (241)
+.+|.+....|......++..+.++|||+-
T Consensus 512 L~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 512 LQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cCCCchhhCChhhccccceeEEEecCCccC
Confidence 999988855555677888888888888864
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.85 E-value=7e-09 Score=97.66 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=72.4
Q ss_pred ccccccccCCCCcccccc-cceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcC----------------
Q 026255 10 RYLQDVLFPYGQVSSNVL-GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISN---------------- 72 (241)
Q Consensus 10 ~~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~---------------- 72 (241)
++|+.++++.|+++.... ......+.+..+.+. .++.++.+|+.|+|++|+|++ +|....+
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~-~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccc-cccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcc
Confidence 456666666676664321 111111222222221 123345677788888888765 3332111
Q ss_pred -CCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcc
Q 026255 73 -LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNT 150 (241)
Q Consensus 73 -l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~ 150 (241)
..+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|... .+|+.|++++|+++ .+|.. ..+..+..+
T Consensus 380 l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 380 LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 123445555555555 23332 235566666666665 345422 34566777777776 45543 446677788
Q ss_pred cccCCCCCC
Q 026255 151 SFDANSGLC 159 (241)
Q Consensus 151 ~~~~n~~lc 159 (241)
++++|+...
T Consensus 451 dLs~N~Ls~ 459 (788)
T PRK15387 451 NLEGNPLSE 459 (788)
T ss_pred ECCCCCCCc
Confidence 888888653
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.77 E-value=3.2e-10 Score=105.48 Aligned_cols=147 Identities=23% Similarity=0.271 Sum_probs=111.5
Q ss_pred CCCccccccccCCCCcccccccceeEEEEE-------eecc---cccccCccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255 7 SELRYLQDVLFPYGQVSSNVLGTYDYSMTM-------NSKG---RMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGL 76 (241)
Q Consensus 7 ~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L 76 (241)
..+++|..|++..|+|.+..... ....+. +... ++..-....+.|+.|++.+|.++...-+.+-++.+|
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~-l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNF-LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred cccceeeeeeehhccccccchHH-HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 44667777777777776544311 011111 1111 111112335678899999999998888889999999
Q ss_pred ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255 77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156 (241)
Q Consensus 77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~ 156 (241)
+.|+|++|++.......+.++..|+.|+||+|+++ .+|+.+..+..|++|...+|++. ..|+..++..+..++++.|.
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 99999999999444456888999999999999999 89999999999999999999998 77888888888888888874
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.77 E-value=1e-08 Score=96.70 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=25.2
Q ss_pred ccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255 99 NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156 (241)
Q Consensus 99 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~ 156 (241)
+|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|... ...+..+++.+|.
T Consensus 326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~ 378 (754)
T PRK15370 326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNA 378 (754)
T ss_pred cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh-cCCcCEEECCCCc
Confidence 3444444444444 2333321 45566666666655 344321 2345556666654
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.77 E-value=6.2e-09 Score=98.12 Aligned_cols=99 Identities=25% Similarity=0.409 Sum_probs=51.3
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|+
T Consensus 324 ~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 324 PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ 394 (754)
T ss_pred cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence 3455555555555544 333332 45666666666665 4554432 45666666666666 4454433 2456666
Q ss_pred ccCCcccCCCCCC-----CccCccCcccccCCCC
Q 026255 129 VSDNYLTGPIPQG-----KQFATFDNTSFDANSG 157 (241)
Q Consensus 129 l~~N~l~g~~p~~-----~~~~~l~~~~~~~n~~ 157 (241)
+++|++. .+|.. .....+..+.+.+|+.
T Consensus 395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 6666665 33432 1123344556666664
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=1.5e-08 Score=86.76 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=72.3
Q ss_pred hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCc
Q 026255 68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFAT 146 (241)
Q Consensus 68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~ 146 (241)
..|..+++|++|+|++|.+++.-+.+|.++..+++|.|..|++.......|.++..|+.|+|.+|+++..-|.. ..+..
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 34778888888888888888777788888888888888888887555667778888888888888887555533 23445
Q ss_pred cCcccccCCCCCCCCCC
Q 026255 147 FDNTSFDANSGLCGRPL 163 (241)
Q Consensus 147 l~~~~~~~n~~lc~~~~ 163 (241)
+..+.+.+||+.|+|.+
T Consensus 348 l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRL 364 (498)
T ss_pred eeeeehccCcccCccch
Confidence 66777788888887743
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.65 E-value=1.8e-07 Score=92.95 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=88.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+.+|+.|++++|.+.. ++..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 5789999999999865 677788899999999998765557775 78899999999999876668899999999999999
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSGL 158 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l 158 (241)
+++|...+.+|....+.++..+++.|+..+
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRL 717 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCc
Confidence 998765557787666777777777776543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=5.2e-09 Score=93.14 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=98.8
Q ss_pred CCCCccccccccCCCCcccccccce---eEEEEEeecc---cccccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255 6 TSELRYLQDVLFPYGQVSSNVLGTY---DYSMTMNSKG---RMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL 79 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 79 (241)
..+|..|++++++.|+++....+.. +..+-.+.++ ++.... ....|..||.+.|.+.. +|..++.+.+|+.|
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~s-lpsql~~l~slr~l 194 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhh-chHHhhhHHHHHHH
Confidence 4578889999999999987665331 1122223333 333333 57778889999999966 77888999999999
Q ss_pred ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC
Q 026255 80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG 136 (241)
Q Consensus 80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 136 (241)
+++.|++. .+|.++..++ |..||++.|+++ .+|-.|..|..|++|-|.+|.++.
T Consensus 195 ~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 195 NVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 99999999 7777787654 889999999999 899999999999999999999984
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=1.1e-08 Score=84.89 Aligned_cols=104 Identities=24% Similarity=0.317 Sum_probs=57.5
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
.+.++.|++++|.|... ..+..+++|+.||||+|.++ .+-..-..+-+.++|.|+.|.+. .+ ..+..+-+|..||
T Consensus 306 ~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheecc
Confidence 45566666666666442 22555666666666666655 34333344555566666666654 22 3355566777777
Q ss_pred ccCCcccC--CCCCCCccCccCcccccCCCC
Q 026255 129 VSDNYLTG--PIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 129 l~~N~l~g--~~p~~~~~~~l~~~~~~~n~~ 157 (241)
+++|++.. .+.....++-+..+.+.+||.
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 77777652 122224445555566666664
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.4e-08 Score=84.35 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=81.2
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 129 (241)
..|+++||++|.|+. +.++..-++.++.|++|+|.+. .+.. ++.+++|+.|||++|.++ .+-.+-..+-+.+.|.+
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 358899999999976 6677888899999999999998 4444 888999999999999998 66666667888999999
Q ss_pred cCCcccCCCCCCCccCccCcccccCCC
Q 026255 130 SDNYLTGPIPQGKQFATFDNTSFDANS 156 (241)
Q Consensus 130 ~~N~l~g~~p~~~~~~~l~~~~~~~n~ 156 (241)
+.|.+. .+.....+-++..+++.+|.
T Consensus 360 a~N~iE-~LSGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 360 AQNKIE-TLSGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hhhhHh-hhhhhHhhhhheeccccccc
Confidence 999886 33333445566677777774
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=8.9e-07 Score=88.07 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=62.8
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|+|+++...+.+|. ++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+ ++++|+.|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 66788888887654444554 6778888888888876655788888888888888888765444666654 567777777
Q ss_pred ccCCcccCCCC
Q 026255 129 VSDNYLTGPIP 139 (241)
Q Consensus 129 l~~N~l~g~~p 139 (241)
+++|...+.+|
T Consensus 711 Lsgc~~L~~~p 721 (1153)
T PLN03210 711 LSGCSRLKSFP 721 (1153)
T ss_pred CCCCCCccccc
Confidence 77765444444
No 30
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=4e-08 Score=72.80 Aligned_cols=88 Identities=27% Similarity=0.356 Sum_probs=72.8
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
.|+..+|++|.+...++..-..++.++.|+|++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 4777899999998754444445668899999999999 88988999999999999999998 778888888889999998
Q ss_pred CCcccCCCCCC
Q 026255 131 DNYLTGPIPQG 141 (241)
Q Consensus 131 ~N~l~g~~p~~ 141 (241)
+|.+. ++|..
T Consensus 132 ~na~~-eid~d 141 (177)
T KOG4579|consen 132 ENARA-EIDVD 141 (177)
T ss_pred CCccc-cCcHH
Confidence 88877 55543
No 31
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=1e-08 Score=93.72 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=84.5
Q ss_pred ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255 47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 126 (241)
++++.++.|+|++|++... +.+..+++|++|||+.|.+. .+|..-..--.|+.|.+++|.++ .+ ..+.++.+|+.
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhc
Confidence 4477899999999999874 37889999999999999998 67653222234999999999998 44 35789999999
Q ss_pred EeccCCcccCC--CCCCCccCccCcccccCCCCCCC
Q 026255 127 FNVSDNYLTGP--IPQGKQFATFDNTSFDANSGLCG 160 (241)
Q Consensus 127 L~l~~N~l~g~--~p~~~~~~~l~~~~~~~n~~lc~ 160 (241)
||+++|-+.+- +-....+..+..+.++|||..|.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999988742 11123345667788999998884
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=1.5e-07 Score=80.09 Aligned_cols=86 Identities=34% Similarity=0.480 Sum_probs=35.7
Q ss_pred cCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCC----chh
Q 026255 50 DILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRI----PQQ 117 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~ 117 (241)
++|+.|++++|.+++. ++..+..+.+|+.|++++|.+++. ++..+...++|+.|++++|.+++.. +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 3445555555554421 122233344455555555544421 1222233344555555555444221 112
Q ss_pred HhhccccceEeccCCccc
Q 026255 118 LVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 118 l~~l~~L~~L~l~~N~l~ 135 (241)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 223344555555555444
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.37 E-value=1.8e-07 Score=82.51 Aligned_cols=81 Identities=38% Similarity=0.621 Sum_probs=55.8
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
+|+.|++++|.+.. +|..+..+++|+.|++++|+++ .+|...+..+.|+.|++++|+++ .+|........|+.+.++
T Consensus 141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 67777777777755 4455677777777777777777 66665556677777777777777 666655455557777777
Q ss_pred CCcc
Q 026255 131 DNYL 134 (241)
Q Consensus 131 ~N~l 134 (241)
+|+.
T Consensus 218 ~N~~ 221 (394)
T COG4886 218 NNSI 221 (394)
T ss_pred CCcc
Confidence 7743
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=2.8e-07 Score=81.21 Aligned_cols=144 Identities=25% Similarity=0.346 Sum_probs=87.6
Q ss_pred cccccccCCCCcccc--cccceeE--EEEEeecccccccCc--cCcCccEEEccCCCCCccchhhhcCCCCCceEecccC
Q 026255 11 YLQDVLFPYGQVSSN--VLGTYDY--SMTMNSKGRMMTYNK--IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN 84 (241)
Q Consensus 11 ~L~~~~~~~~~l~~~--~~~~~~~--~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N 84 (241)
.|+.++++.|++... .+..... .+.+....+...... .+++|+.|++++|++.. +|........|+++.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCC
Confidence 566667777766653 2222111 122222222111111 45667777888887765 5555455566777777777
Q ss_pred cCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255 85 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158 (241)
Q Consensus 85 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l 158 (241)
.+. ..+..+..+.++..+.+.+|++. .++..+..+++++.|++++|.++ .++....+..+..+++++|...
T Consensus 220 ~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 220 SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 544 45556677777777777777776 44666777777888888888877 4444556667777777776544
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.32 E-value=7.8e-08 Score=81.89 Aligned_cols=88 Identities=27% Similarity=0.294 Sum_probs=51.3
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCC---CceEecccCcCCC----CCccccCCC-CccceeeccCCcCCCC----Cch
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKG---LQVLNLHNNNLQG----HIPSCLGNL-TNLESLDLSNNKFSGR----IPQ 116 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~ 116 (241)
+++|+.|++++|.+.+..+..+..+.. |+.|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 456777777777776545555544444 7777777776652 122234444 6667777777776632 222
Q ss_pred hHhhccccceEeccCCcccC
Q 026255 117 QLVELTFLEFFNVSDNYLTG 136 (241)
Q Consensus 117 ~l~~l~~L~~L~l~~N~l~g 136 (241)
.+..++.|++|++++|.+++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 160 ALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHhCCCcCEEECcCCCCch
Confidence 34444566777777666653
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1e-06 Score=52.65 Aligned_cols=36 Identities=42% Similarity=0.637 Sum_probs=16.2
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCC
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ 87 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~ 87 (241)
+|++|++++|+|+. +|+.+++|++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34455555555543 3333445555555555555444
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.7e-06 Score=51.72 Aligned_cols=40 Identities=50% Similarity=0.738 Sum_probs=33.9
Q ss_pred CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc
Q 026255 74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 115 (241)
Q Consensus 74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 115 (241)
++|++|++++|+++ .+|..++++++|+.|++++|+++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 47999999999999 77878999999999999999998 443
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.1e-07 Score=70.59 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=71.5
Q ss_pred cCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255 45 YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124 (241)
Q Consensus 45 ~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 124 (241)
|...++.++.|+|++|.|+. +|.++..++.|+.|+++.|.+. ..|.-+..+.++..|+..+|.+. ++|..+.--...
T Consensus 72 ft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~ 148 (177)
T KOG4579|consen 72 FTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLP 148 (177)
T ss_pred Hhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccH
Confidence 33346678999999999987 7888999999999999999999 78888888999999999999988 777653322223
Q ss_pred ceEeccCCcccCCCCC
Q 026255 125 EFFNVSDNYLTGPIPQ 140 (241)
Q Consensus 125 ~~L~l~~N~l~g~~p~ 140 (241)
...++.++.+.+.-+.
T Consensus 149 al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 149 ALIKLGNEPLGDETKK 164 (177)
T ss_pred HHHHhcCCcccccCcc
Confidence 3445566666655443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.19 E-value=2.1e-07 Score=83.12 Aligned_cols=105 Identities=28% Similarity=0.437 Sum_probs=58.6
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC----------------
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG---------------- 112 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---------------- 112 (241)
+..|+.+||+.|+++. .|..+..++ |+.|-+++|+++ .+|..++.+..|..||.+.|.+..
T Consensus 120 L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 3445555555555543 444444444 555555555555 455555544555555555554441
Q ss_pred ------CCchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccCCCCC
Q 026255 113 ------RIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSGL 158 (241)
Q Consensus 113 ------~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~l 158 (241)
.+|..+..++ |..||++.|+++ .+|. ...+..+..+.++.||..
T Consensus 197 rRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 197 RRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 3444444333 666777777777 4443 355677777888888754
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=9.4e-07 Score=76.73 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=76.9
Q ss_pred CCCCccccccccCCCCcccccc----cceeE--EEEEeecccccccCc------cCcCccEEEccCCCCCccchhhhcCC
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL----GTYDY--SMTMNSKGRMMTYNK------IPDILTGIILSNNRFDEAIPASISNL 73 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~------~~~~L~~L~L~~n~i~~~~p~~~~~l 73 (241)
+..|++|+.|.++.|++..-.. .+... .+.++..++ ++.. ..++|..|+|..|..-..-.....-+
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl--s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL--SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC--CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 3457788888888888864222 11111 122222222 2222 25678888888884323233334456
Q ss_pred CCCceEecccCcCCCCCc--cccCCCCccceeeccCCcCCCC-Cchh-----HhhccccceEeccCCccc
Q 026255 74 KGLQVLNLHNNNLQGHIP--SCLGNLTNLESLDLSNNKFSGR-IPQQ-----LVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 74 ~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~l~~N~l~ 135 (241)
..|+.|||++|++- ..+ ...+.++.|..|+++.+.+... +|+. ...+++|++|++..|++.
T Consensus 246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 67888888888876 344 3466778888888888877632 2322 344678888888888875
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.03 E-value=7.2e-06 Score=78.93 Aligned_cols=86 Identities=29% Similarity=0.376 Sum_probs=57.5
Q ss_pred CcCccEEEccCCC--CCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255 49 PDILTGIILSNNR--FDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126 (241)
Q Consensus 49 ~~~L~~L~L~~n~--i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 126 (241)
.+.|++|-+..|. +.....+.|..++.|+.|||++|.--+.+|..++.+.+|++|++++..+. .+|..+.++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3356666666664 44444455666777777777776655577777777777777777777776 67777777777777
Q ss_pred EeccCCccc
Q 026255 127 FNVSDNYLT 135 (241)
Q Consensus 127 L~l~~N~l~ 135 (241)
||+..+.-.
T Consensus 623 Lnl~~~~~l 631 (889)
T KOG4658|consen 623 LNLEVTGRL 631 (889)
T ss_pred ecccccccc
Confidence 777765433
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=4.1e-06 Score=74.49 Aligned_cols=83 Identities=31% Similarity=0.303 Sum_probs=54.9
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh-Hhhccccce
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF 126 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~ 126 (241)
.+.+|++|++++|.|+.+.+ +..++.|+.|++++|.++ .+.. +..+..|+.+++++|.+...-+ . ...+.+++.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~ 190 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DISG-LESLKSLKLLDLSYNRIVDIEN-DELSELISLEE 190 (414)
T ss_pred hhhcchheeccccccccccc--hhhccchhhheeccCcch-hccC-CccchhhhcccCCcchhhhhhh-hhhhhccchHH
Confidence 36677778888888766433 556667777888888777 4433 4557777777888887773322 1 356666777
Q ss_pred EeccCCccc
Q 026255 127 FNVSDNYLT 135 (241)
Q Consensus 127 L~l~~N~l~ 135 (241)
+.+.+|.+.
T Consensus 191 l~l~~n~i~ 199 (414)
T KOG0531|consen 191 LDLGGNSIR 199 (414)
T ss_pred HhccCCchh
Confidence 777776664
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=5.1e-06 Score=73.93 Aligned_cols=105 Identities=27% Similarity=0.317 Sum_probs=78.7
Q ss_pred ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255 47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 126 (241)
..+.+++.|++.+|.|.++ ...+..+++|+.|++++|.|+...+ +..++.|+.|++++|.|+ .+. .+..++.|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hcc-CCccchhhhc
Confidence 4477899999999999874 3436789999999999999984443 567788999999999998 443 4566889999
Q ss_pred EeccCCcccCCCCC-CCccCccCcccccCCC
Q 026255 127 FNVSDNYLTGPIPQ-GKQFATFDNTSFDANS 156 (241)
Q Consensus 127 L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~ 156 (241)
+++++|.+...-+. ...+..+..+.+.+|.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 99999999854441 2444455555555554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.75 E-value=2.4e-05 Score=75.45 Aligned_cols=90 Identities=30% Similarity=0.392 Sum_probs=78.2
Q ss_pred cccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcc
Q 026255 43 MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 122 (241)
Q Consensus 43 ~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 122 (241)
..|..-++.|++|||++|.=-+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.-...+|.....+.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 334455889999999998777789999999999999999999999 9999999999999999999886656777777799
Q ss_pred ccceEeccCCc
Q 026255 123 FLEFFNVSDNY 133 (241)
Q Consensus 123 ~L~~L~l~~N~ 133 (241)
+|++|.+..-.
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 99999986543
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=8.2e-05 Score=58.78 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=68.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCch--hHhhccccce
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ--QLVELTFLEF 126 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~ 126 (241)
..+...+||++|.+.. + +.|..++.|.+|.|.+|+|+..-|.--..+++|+.|.+.+|.|. .+.+ -+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 4567778888888854 2 44677888888888888888555554445677888888888876 3322 3556788888
Q ss_pred EeccCCcccCCCC----CCCccCccCcccccC
Q 026255 127 FNVSDNYLTGPIP----QGKQFATFDNTSFDA 154 (241)
Q Consensus 127 L~l~~N~l~g~~p----~~~~~~~l~~~~~~~ 154 (241)
|.+-+|+.+..-- -...++++..++|++
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8888887763210 012345555566654
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=2.3e-05 Score=68.35 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=54.3
Q ss_pred CcCccEEEccCCCCCcc-chhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc--hhHhhccccc
Q 026255 49 PDILTGIILSNNRFDEA-IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP--QQLVELTFLE 125 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~ 125 (241)
++.++.|.|+.|+++-. +......+++|+.|+|..|...+.-.....-+..|+.|||++|++- ..+ .....++.|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 44555555555555421 1222344566666666666422222223334556667777777665 233 2345566666
Q ss_pred eEeccCCcccCC-CCCC------CccCccCcccccCCC
Q 026255 126 FFNVSDNYLTGP-IPQG------KQFATFDNTSFDANS 156 (241)
Q Consensus 126 ~L~l~~N~l~g~-~p~~------~~~~~l~~~~~~~n~ 156 (241)
.|+++.+.++.. .|+. ..+.++..+++..|+
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 666666665531 2222 334555555555554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=5.6e-06 Score=76.28 Aligned_cols=99 Identities=28% Similarity=0.384 Sum_probs=77.7
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh-HhhccccceEec
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEFFNV 129 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l 129 (241)
.|...+.+.|.+.- ...++.-++.|+.|||++|+++. .. .+..++.|++|||+.|.++ .+|.. ...+. |..|++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 36667888888854 66778888999999999999983 33 6888999999999999998 66653 22344 999999
Q ss_pred cCCcccCCCCCCCccCccCcccccCC
Q 026255 130 SDNYLTGPIPQGKQFATFDNTSFDAN 155 (241)
Q Consensus 130 ~~N~l~g~~p~~~~~~~l~~~~~~~n 155 (241)
++|.++ .+-...++.++..++++.|
T Consensus 240 rnN~l~-tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 240 RNNALT-TLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred cccHHH-hhhhHHhhhhhhccchhHh
Confidence 999988 5555567778888887776
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00017 Score=57.03 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=46.4
Q ss_pred CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC--CCCCCCccCccCccc
Q 026255 74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG--PIPQGKQFATFDNTS 151 (241)
Q Consensus 74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~~~~~~l~~~~ 151 (241)
.....+||++|.+. .++ .|..++.|.+|.+.+|+|+..-|.--..++.|..|.+.+|.+.. .+-.....+.+..+.
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34556667777665 333 25566667777777777765555444445666677777766641 222223445556666
Q ss_pred ccCCC
Q 026255 152 FDANS 156 (241)
Q Consensus 152 ~~~n~ 156 (241)
+.|||
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 66665
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.08 E-value=0.0015 Score=57.55 Aligned_cols=12 Identities=8% Similarity=-0.003 Sum_probs=6.8
Q ss_pred ccceEeccCCcc
Q 026255 123 FLEFFNVSDNYL 134 (241)
Q Consensus 123 ~L~~L~l~~N~l 134 (241)
+|++|++++|..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 455666665543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00044 Score=57.97 Aligned_cols=92 Identities=27% Similarity=0.274 Sum_probs=66.7
Q ss_pred ccCccCcCccEEEccCCCCCc--cchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc-hhHhh
Q 026255 44 TYNKIPDILTGIILSNNRFDE--AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP-QQLVE 120 (241)
Q Consensus 44 ~~~~~~~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~ 120 (241)
.+....+.++++||.+|.|+. .+...+.+|+.|+.|+++.|++...+...-....+|++|-|.+..+...-. ..+..
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 334446779999999999975 344557799999999999999985443322356788999888877654332 34556
Q ss_pred ccccceEeccCCccc
Q 026255 121 LTFLEFFNVSDNYLT 135 (241)
Q Consensus 121 l~~L~~L~l~~N~l~ 135 (241)
+|.++.|+++.|.+.
T Consensus 145 lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLR 159 (418)
T ss_pred chhhhhhhhccchhh
Confidence 778888888888554
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.0011 Score=54.40 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=18.9
Q ss_pred cCCCCCceEecccC--cCCCCCccccCCCCccceeeccCCcCC
Q 026255 71 SNLKGLQVLNLHNN--NLQGHIPSCLGNLTNLESLDLSNNKFS 111 (241)
Q Consensus 71 ~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 111 (241)
..|++|++|.++.| ++++.++.....+++|+++++++|++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444555555555 333333333333455555555555544
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.0019 Score=52.93 Aligned_cols=87 Identities=20% Similarity=0.297 Sum_probs=60.1
Q ss_pred chhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCC--cCCCCCchhHhhccccceEeccCCcccC--CCCCC
Q 026255 66 IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN--KFSGRIPQQLVELTFLEFFNVSDNYLTG--PIPQG 141 (241)
Q Consensus 66 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~ 141 (241)
+..-...+..|+.|.+.+-.++ ++. .+..+++|+.|.++.| .+++.++.....+++|++++++.|++.- .++..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 3333445567777777777776 333 3678899999999999 6666666666677999999999998862 33333
Q ss_pred CccCccCcccccC
Q 026255 142 KQFATFDNTSFDA 154 (241)
Q Consensus 142 ~~~~~l~~~~~~~ 154 (241)
..+..+..+++..
T Consensus 113 ~~l~nL~~Ldl~n 125 (260)
T KOG2739|consen 113 KELENLKSLDLFN 125 (260)
T ss_pred hhhcchhhhhccc
Confidence 4445555555443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.57 E-value=0.0027 Score=60.02 Aligned_cols=61 Identities=31% Similarity=0.336 Sum_probs=29.2
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCC-CCccccCCCCccceeeccCCcCC
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFS 111 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~ 111 (241)
+++|..||+|+.+++.. ..++.+++|+.|.+.+=.+.. ..-..+.++++|++||+|..+..
T Consensus 172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 44555555555555432 334555555555555444431 11112344555555555555443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.45 E-value=0.0057 Score=54.04 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=45.6
Q ss_pred ccCcCccEEEccCC-CCCccchhhhcCCCCCceEecccCcCC--CCCccccCCC------------------Cccceeec
Q 026255 47 KIPDILTGIILSNN-RFDEAIPASISNLKGLQVLNLHNNNLQ--GHIPSCLGNL------------------TNLESLDL 105 (241)
Q Consensus 47 ~~~~~L~~L~L~~n-~i~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l------------------~~L~~L~L 105 (241)
.++.+|+.|++++| .+.. +|. +|+.|+++++... +.+|..+..| ++|++|++
T Consensus 91 ~LP~nLe~L~Ls~Cs~L~s-LP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~I 163 (426)
T PRK15386 91 SIPEGLEKLTVCHCPEISG-LPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSL 163 (426)
T ss_pred hhhhhhhheEccCcccccc-ccc------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEe
Confidence 34567777777777 4433 443 3445555554421 1344333222 47888999
Q ss_pred cCCcCCCCCchhHhhccccceEeccCCc
Q 026255 106 SNNKFSGRIPQQLVELTFLEFFNVSDNY 133 (241)
Q Consensus 106 s~N~l~~~~p~~l~~l~~L~~L~l~~N~ 133 (241)
++|... .+|+.+. .+|+.|+++.|.
T Consensus 164 s~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 164 TGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cCCCcc-cCccccc--ccCcEEEecccc
Confidence 988866 4555443 478889988763
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.00079 Score=55.95 Aligned_cols=77 Identities=27% Similarity=0.335 Sum_probs=58.5
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCcc--ccCCCCccceeeccCCcCCCCCch-----hHhhc
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNKFSGRIPQ-----QLVEL 121 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l 121 (241)
++.|++|.|+-|+|+..-| +..+++|+.|+|..|.|. .+.+ .+.++++|+.|+|..|.-.|.-+. .+.-+
T Consensus 40 Mp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred cccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 7788899999999987533 678888999999999887 3332 467888999999999988776554 34557
Q ss_pred cccceEe
Q 026255 122 TFLEFFN 128 (241)
Q Consensus 122 ~~L~~L~ 128 (241)
|+|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 7777765
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.07 E-value=0.0015 Score=55.69 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=75.8
Q ss_pred CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCCchhHh-
Q 026255 49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQQLV- 119 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~- 119 (241)
.+.|+.+.++.|.|... +-..+..+++|+.|||+.|.++.. +...+..+++|+.|+++++.+...-...+.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 56888999999988431 234567889999999999988743 334566788899999999988754433332
Q ss_pred ----hccccceEeccCCcccCCCC-----CCCccCccCcccccCCCC
Q 026255 120 ----ELTFLEFFNVSDNYLTGPIP-----QGKQFATFDNTSFDANSG 157 (241)
Q Consensus 120 ----~l~~L~~L~l~~N~l~g~~p-----~~~~~~~l~~~~~~~n~~ 157 (241)
..++|+.+.+.+|.++..-- .....+.+..+.++||..
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 25789999999998863100 012245667778888865
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0026 Score=31.76 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=3.8
Q ss_pred cEEEccCCCC
Q 026255 53 TGIILSNNRF 62 (241)
Q Consensus 53 ~~L~L~~n~i 62 (241)
++|||++|+|
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3333333333
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0039 Score=31.11 Aligned_cols=22 Identities=50% Similarity=0.771 Sum_probs=18.0
Q ss_pred CCceEecccCcCCCCCccccCCC
Q 026255 75 GLQVLNLHNNNLQGHIPSCLGNL 97 (241)
Q Consensus 75 ~L~~L~Ls~N~l~~~~p~~~~~l 97 (241)
+|++|++++|+++ .+|+.|+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4899999999999 888877653
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.13 E-value=0.018 Score=49.31 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=74.3
Q ss_pred CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCC----ch
Q 026255 49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRI----PQ 116 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~ 116 (241)
.+.|++++...|.+... +...|...+.|+.+.++.|.|.-. +-..+..+++|+.|||..|-|+..- ..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 67899999999988542 334466778899999999987521 2235678899999999999887432 23
Q ss_pred hHhhccccceEeccCCcccCCCCC------CCccCccCcccccCCC
Q 026255 117 QLVELTFLEFFNVSDNYLTGPIPQ------GKQFATFDNTSFDANS 156 (241)
Q Consensus 117 ~l~~l~~L~~L~l~~N~l~g~~p~------~~~~~~l~~~~~~~n~ 156 (241)
.+..+++|+.++++++.+...-.. ....+.+..+.+.||.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 456678899999999887632110 0124455666666664
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.11 E-value=0.017 Score=54.80 Aligned_cols=90 Identities=20% Similarity=0.366 Sum_probs=65.1
Q ss_pred ccCccCcCccEEEccCCCCCcc-chhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhc
Q 026255 44 TYNKIPDILTGIILSNNRFDEA-IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVEL 121 (241)
Q Consensus 44 ~~~~~~~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l 121 (241)
.....+|.|+.|.+.+-.+... ......++++|..||+|+.+++ .+ ..++.+++|+.|.+.+=.+.. ..-..+.++
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 3345688899998888776432 2334567899999999999988 44 557888999998887776652 111346678
Q ss_pred cccceEeccCCccc
Q 026255 122 TFLEFFNVSDNYLT 135 (241)
Q Consensus 122 ~~L~~L~l~~N~l~ 135 (241)
++|++||+|.....
T Consensus 220 ~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 220 KKLRVLDISRDKNN 233 (699)
T ss_pred cCCCeeeccccccc
Confidence 99999999986554
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.0032 Score=52.46 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=68.6
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCch--hHhhccccce
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ--QLVELTFLEF 126 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~ 126 (241)
+.+++.|+.-++.++.+ .....|+.|+.|.|+-|.|+..-| +..++.|++|+|..|.|. .+-+ .+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 45677888889988763 446789999999999999994333 678999999999999998 4433 4668899999
Q ss_pred EeccCCcccCCCC
Q 026255 127 FNVSDNYLTGPIP 139 (241)
Q Consensus 127 L~l~~N~l~g~~p 139 (241)
|-|..|.-.|.-+
T Consensus 93 LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 93 LWLDENPCCGEAG 105 (388)
T ss_pred HhhccCCcccccc
Confidence 9999998776543
No 62
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.62 E-value=0.00062 Score=55.19 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=47.6
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 129 (241)
...+.||++.|++-. ....|+-++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.++++++
T Consensus 42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 345556666665532 3344455555566666666665 55555666656666666666655 55666666666666666
Q ss_pred cCCccc
Q 026255 130 SDNYLT 135 (241)
Q Consensus 130 ~~N~l~ 135 (241)
-.|.|+
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 555543
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.27 E-value=0.024 Score=26.34 Aligned_cols=11 Identities=64% Similarity=1.002 Sum_probs=3.1
Q ss_pred cceeeccCCcC
Q 026255 100 LESLDLSNNKF 110 (241)
Q Consensus 100 L~~L~Ls~N~l 110 (241)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.01 E-value=0.046 Score=45.63 Aligned_cols=86 Identities=28% Similarity=0.387 Sum_probs=51.2
Q ss_pred CcCccEEEccCCCCCccchhh----hcCCCCCceEecccCcCCCC----Cc-------cccCCCCccceeeccCCcCCCC
Q 026255 49 PDILTGIILSNNRFDEAIPAS----ISNLKGLQVLNLHNNNLQGH----IP-------SCLGNLTNLESLDLSNNKFSGR 113 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~----~~~l~~L~~L~Ls~N~l~~~----~p-------~~~~~l~~L~~L~Ls~N~l~~~ 113 (241)
+..++.++||+|.|...-..+ +.+-.+|+..+++.-. +|. ++ +.+-.+|.|+..+||.|.|...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 667888889998886543333 3334555555555432 112 12 2244567777777777777766
Q ss_pred CchhHh----hccccceEeccCCccc
Q 026255 114 IPQQLV----ELTFLEFFNVSDNYLT 135 (241)
Q Consensus 114 ~p~~l~----~l~~L~~L~l~~N~l~ 135 (241)
.|+.+. .-..|.+|.+++|.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 665433 3456777777777653
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.94 E-value=0.18 Score=36.56 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=35.2
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 129 (241)
.+|+.+.+.. .+..+....|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3455555553 344444455666666666666554 4433344455555666666654 332122334455666666666
Q ss_pred cCC
Q 026255 130 SDN 132 (241)
Q Consensus 130 ~~N 132 (241)
..+
T Consensus 89 ~~~ 91 (129)
T PF13306_consen 89 PSN 91 (129)
T ss_dssp TTT
T ss_pred Ccc
Confidence 543
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.70 E-value=0.2 Score=41.94 Aligned_cols=86 Identities=23% Similarity=0.237 Sum_probs=55.2
Q ss_pred CcCccEEEccCCCCCccchhh----hcCCCCCceEecccCcCCCCCccc-------------cCCCCccceeeccCCcCC
Q 026255 49 PDILTGIILSNNRFDEAIPAS----ISNLKGLQVLNLHNNNLQGHIPSC-------------LGNLTNLESLDLSNNKFS 111 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~-------------~~~l~~L~~L~Ls~N~l~ 111 (241)
++.|+.++||+|.|....|+. ++.-+.|.+|.+++|.+.-.--.- ...-|.|++.+...|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 578999999999997766655 456688999999999875211111 123467888888888775
Q ss_pred CCCchh-----HhhccccceEeccCCccc
Q 026255 112 GRIPQQ-----LVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 112 ~~~p~~-----l~~l~~L~~L~l~~N~l~ 135 (241)
..|.. +..-..|+.+.+..|.+.
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 33321 222235566666666543
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.33 E-value=0.14 Score=26.28 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=7.8
Q ss_pred CccEEEccCCCCCcc
Q 026255 51 ILTGIILSNNRFDEA 65 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~ 65 (241)
+|+.|+|++|.|...
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 455555555555443
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.33 E-value=0.14 Score=26.28 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=7.8
Q ss_pred CccEEEccCCCCCcc
Q 026255 51 ILTGIILSNNRFDEA 65 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~ 65 (241)
+|+.|+|++|.|...
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 455555555555443
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=0.045 Score=46.24 Aligned_cols=63 Identities=29% Similarity=0.340 Sum_probs=47.7
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCcc-ccCCCCccceeeccCCcCC
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFS 111 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~ 111 (241)
++.|++|+|+.|.+...+...-..+.+|+.|.|.+..+.+.... .+..+|.++.|+++.|.+.
T Consensus 96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 78899999999999765433213567899999999888765544 3567888888888888443
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.77 E-value=0.0092 Score=48.56 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=70.3
Q ss_pred CccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC
Q 026255 63 DEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK 142 (241)
Q Consensus 63 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 142 (241)
+.+.--.+......+.||++.|++. .+-..|+-+..|..||++.|++. ..|..+.....++.+++..|..+...-+..
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 3333344667788899999999998 56666788889999999999998 889999999999999999998874433445
Q ss_pred ccCccCcccccCCC
Q 026255 143 QFATFDNTSFDANS 156 (241)
Q Consensus 143 ~~~~l~~~~~~~n~ 156 (241)
+.+.+...+..+|+
T Consensus 109 k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTE 122 (326)
T ss_pred ccCCcchhhhccCc
Confidence 55566656666665
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.60 E-value=0.19 Score=25.80 Aligned_cols=14 Identities=64% Similarity=0.873 Sum_probs=7.9
Q ss_pred CccceeeccCCcCC
Q 026255 98 TNLESLDLSNNKFS 111 (241)
Q Consensus 98 ~~L~~L~Ls~N~l~ 111 (241)
++|+.|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.60 E-value=0.19 Score=25.80 Aligned_cols=14 Identities=64% Similarity=0.873 Sum_probs=7.9
Q ss_pred CccceeeccCCcCC
Q 026255 98 TNLESLDLSNNKFS 111 (241)
Q Consensus 98 ~~L~~L~Ls~N~l~ 111 (241)
++|+.|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.032 Score=47.13 Aligned_cols=122 Identities=18% Similarity=0.142 Sum_probs=63.7
Q ss_pred CCccccccccCCCC-ccccccc------ceeEEEEEeeccccccc-----CccCcCccEEEccCCCC---CccchhhhcC
Q 026255 8 ELRYLQDVLFPYGQ-VSSNVLG------TYDYSMTMNSKGRMMTY-----NKIPDILTGIILSNNRF---DEAIPASISN 72 (241)
Q Consensus 8 ~l~~L~~~~~~~~~-l~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~n~i---~~~~p~~~~~ 72 (241)
+-+.|..++++|.. ++.+.+. ...+.++++|..+.... ..+-++|+.|+|++..= ...+..--..
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 33455566666543 2322221 13344555555443222 23455677777766431 1112222345
Q ss_pred CCCCceEecccCc-CCCCCccccCCCCccceeeccCCcCCCCCchhH---hhccccceEeccC
Q 026255 73 LKGLQVLNLHNNN-LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL---VELTFLEFFNVSD 131 (241)
Q Consensus 73 l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~l~~ 131 (241)
+++|..|||+.|. ++...-..|.+++.|++|.++.+.. .+|+.+ ...|+|.+||+.+
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 6777777777654 3333344556677777777776653 355543 3456777777654
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.52 E-value=0.31 Score=35.31 Aligned_cols=79 Identities=24% Similarity=0.292 Sum_probs=47.7
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
..+|+.+.+.++ +.......|..+..++.+.+.+ .+.......|..+.+|+.+++..+ +...-...|.++ .|+.+.
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred cccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence 557889999875 7666667788888899999976 454345566777899999999776 542333456665 788877
Q ss_pred ccC
Q 026255 129 VSD 131 (241)
Q Consensus 129 l~~ 131 (241)
+..
T Consensus 110 ~~~ 112 (129)
T PF13306_consen 110 IPS 112 (129)
T ss_dssp -TT
T ss_pred ECC
Confidence 665
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.48 E-value=0.14 Score=25.80 Aligned_cols=13 Identities=69% Similarity=1.009 Sum_probs=5.2
Q ss_pred ccceeeccCCcCC
Q 026255 99 NLESLDLSNNKFS 111 (241)
Q Consensus 99 ~L~~L~Ls~N~l~ 111 (241)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444555555443
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.86 E-value=0.1 Score=44.14 Aligned_cols=86 Identities=24% Similarity=0.249 Sum_probs=54.9
Q ss_pred CccEEEccCCCCCc-cchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCc-CCCC-CchhHhhccccceE
Q 026255 51 ILTGIILSNNRFDE-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK-FSGR-IPQQLVELTFLEFF 127 (241)
Q Consensus 51 ~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L 127 (241)
.++.|||+...|+. ..-..++.+.+|+.|.+.++++...+-..++.-.+|+.++++... ++.. ..--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777777753 233445667777778888887776666667766777777777653 3311 11234567777777
Q ss_pred eccCCcccC
Q 026255 128 NVSDNYLTG 136 (241)
Q Consensus 128 ~l~~N~l~g 136 (241)
+++.+.++.
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 777766543
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.35 E-value=0.63 Score=24.15 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=8.4
Q ss_pred ccceeeccCCcCCCCCch
Q 026255 99 NLESLDLSNNKFSGRIPQ 116 (241)
Q Consensus 99 ~L~~L~Ls~N~l~~~~p~ 116 (241)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3455555555554 4443
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.09 E-value=1.3 Score=22.91 Aligned_cols=14 Identities=29% Similarity=0.340 Sum_probs=7.8
Q ss_pred cCccEEEccCCCCC
Q 026255 50 DILTGIILSNNRFD 63 (241)
Q Consensus 50 ~~L~~L~L~~n~i~ 63 (241)
.+|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555666666554
No 79
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.04 E-value=2.1 Score=31.31 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=8.0
Q ss_pred eehhhhhhhHHHHHHH
Q 026255 197 LTGYAGGLVAGLVLGF 212 (241)
Q Consensus 197 ~~~~~~~~~~~~~~~~ 212 (241)
.+++++|+++|++..+
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 3445555555554433
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.30 E-value=0.71 Score=36.90 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=52.0
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCC-Ccccc-CCCCccceeeccCCc-CCCCCchhHhhccccceE
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH-IPSCL-GNLTNLESLDLSNNK-FSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L 127 (241)
.++.+|-++..|..+=-+.+.+++.++.|.+.++.-.+. .-+.+ +-.++|+.|++++|. ||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 377888898888765556677777777777776643211 00111 134789999999775 664433456667777777
Q ss_pred eccC
Q 026255 128 NVSD 131 (241)
Q Consensus 128 ~l~~ 131 (241)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 81
>PF15179 Myc_target_1: Myc target protein 1
Probab=76.24 E-value=2.8 Score=32.64 Aligned_cols=37 Identities=19% Similarity=0.541 Sum_probs=24.5
Q ss_pred CccceeEeehhhhhhhHHHHHHHHHhhhhhHHHHHHhh
Q 026255 190 ASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLG 227 (241)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 227 (241)
..+|.-++++.++.+++|++++.++++ ...|..|..+
T Consensus 15 ~f~~~~lIlaF~vSm~iGLviG~li~~-LltwlSRRRA 51 (197)
T PF15179_consen 15 NFDWEDLILAFCVSMAIGLVIGALIWA-LLTWLSRRRA 51 (197)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccc
Confidence 445777777777777888777776655 4566665543
No 82
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=75.09 E-value=3.3 Score=23.51 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=8.5
Q ss_pred ehhhhhhhHHHHHHHHH
Q 026255 198 TGYAGGLVAGLVLGFNF 214 (241)
Q Consensus 198 ~~~~~~~~~~~~~~~~~ 214 (241)
+++++++++++++.+++
T Consensus 6 IaIIv~V~vg~~iiii~ 22 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIIC 22 (38)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34555555555444443
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=73.17 E-value=2 Score=46.45 Aligned_cols=32 Identities=31% Similarity=0.254 Sum_probs=26.0
Q ss_pred eccCCcCCCCCchhHhhccccceEeccCCccc
Q 026255 104 DLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 104 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 135 (241)
||++|+|+...+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999555567778888999999888776
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.21 E-value=3.1 Score=21.71 Aligned_cols=12 Identities=67% Similarity=0.908 Sum_probs=5.9
Q ss_pred cceeeccCCcCC
Q 026255 100 LESLDLSNNKFS 111 (241)
Q Consensus 100 L~~L~Ls~N~l~ 111 (241)
|++|||++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 445555555543
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.10 E-value=2.2 Score=31.19 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=20.7
Q ss_pred eEeehhhhhhhHHHHHHHHHhhhhhHHHHHHh
Q 026255 195 IILTGYAGGLVAGLVLGFNFSTGIIGWILEKL 226 (241)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 226 (241)
.+..+...++++|++.+++..++...|++++.
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778888888877776555555544
No 86
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=67.45 E-value=5.7 Score=31.87 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=11.8
Q ss_pred ceeEeehhhhhhhHHHHHHHHHhh
Q 026255 193 WKIILTGYAGGLVAGLVLGFNFST 216 (241)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~ 216 (241)
...+++|+++|++++|++.++.+.
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~ 59 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVL 59 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHH
Confidence 444555555555555444444433
No 87
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=62.11 E-value=4.8 Score=30.50 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=7.9
Q ss_pred eEeehhhhhhhHHHHHH
Q 026255 195 IILTGYAGGLVAGLVLG 211 (241)
Q Consensus 195 ~~~~~~~~~~~~~~~~~ 211 (241)
.+++|+++|+.+.++++
T Consensus 49 nIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLG 65 (154)
T ss_pred cEEEEEEecccHHHHHH
Confidence 34455555544444433
No 88
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=61.12 E-value=8 Score=34.45 Aligned_cols=61 Identities=23% Similarity=0.175 Sum_probs=26.6
Q ss_pred CCCCCceEecccCc-CCCCCccccCC-CCccceeeccCCc-CCCCCc-hhHhhccccceEeccCC
Q 026255 72 NLKGLQVLNLHNNN-LQGHIPSCLGN-LTNLESLDLSNNK-FSGRIP-QQLVELTFLEFFNVSDN 132 (241)
Q Consensus 72 ~l~~L~~L~Ls~N~-l~~~~p~~~~~-l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~l~~N 132 (241)
.+.+|+.|++++.. ++...-..+.. +++|+.|.+.++. ++..-- .....+++|++|+++.+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 34555555555555 33221112221 4556666554444 332111 11223455666666654
No 89
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=59.65 E-value=9.1 Score=22.06 Aligned_cols=9 Identities=22% Similarity=0.099 Sum_probs=3.5
Q ss_pred eeEeehhhh
Q 026255 194 KIILTGYAG 202 (241)
Q Consensus 194 ~~~~~~~~~ 202 (241)
..+++|++.
T Consensus 11 vaIa~~VvV 19 (40)
T PF08693_consen 11 VAIAVGVVV 19 (40)
T ss_pred EEEEEEEEe
Confidence 344444333
No 90
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=57.38 E-value=3.4 Score=26.40 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=0.0
Q ss_pred hhhhHH
Q 026255 202 GGLVAG 207 (241)
Q Consensus 202 ~~~~~~ 207 (241)
+|++++
T Consensus 16 aG~Vvg 21 (64)
T PF01034_consen 16 AGGVVG 21 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.37 E-value=8.9 Score=41.88 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=28.9
Q ss_pred EccCCCCCccchhhhcCCCCCceEecccCcCC
Q 026255 56 ILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ 87 (241)
Q Consensus 56 ~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~ 87 (241)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999888888999999999999999886
No 92
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.80 E-value=10 Score=29.51 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=23.5
Q ss_pred ccceeEeehhhhhhhHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q 026255 191 SDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKA 232 (241)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 232 (241)
+.|..+..+..+|.++..+++.+.++...+|.+..++.++++
T Consensus 133 ~lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR~~ 174 (184)
T COG3216 133 SLWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERRRR 174 (184)
T ss_pred HhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666655555555555555555555555555544443
No 93
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=51.04 E-value=19 Score=27.39 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=16.4
Q ss_pred cceeEeehhhhhhhHHHHHHHHHh
Q 026255 192 DWKIILTGYAGGLVAGLVLGFNFS 215 (241)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~ 215 (241)
....+++|+++++++++++++.++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeE
Confidence 567788888888777665555443
No 94
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=49.42 E-value=32 Score=20.04 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=8.4
Q ss_pred HHHHHHhhhhhHHHHHHhh
Q 026255 209 VLGFNFSTGIIGWILEKLG 227 (241)
Q Consensus 209 ~~~~~~~~~~~~w~~~~~~ 227 (241)
++.+.+..+..+++.++++
T Consensus 20 ~~~igm~~~~~~~F~~k~~ 38 (42)
T PF11346_consen 20 VFTIGMGVFFIRYFIRKMK 38 (42)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3333333344455555543
No 95
>PF15050 SCIMP: SCIMP protein
Probab=49.41 E-value=17 Score=26.36 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhhhhhHHHHHHhhhhhh
Q 026255 205 VAGLVLGFNFSTGIIGWILEKLGMQQK 231 (241)
Q Consensus 205 ~~~~~~~~~~~~~~~~w~~~~~~~~~~ 231 (241)
++.+++++++++ ..+|..|.=++|.-
T Consensus 18 ~vS~~lglIlyC-vcR~~lRqGkkwei 43 (133)
T PF15050_consen 18 LVSVVLGLILYC-VCRWQLRQGKKWEI 43 (133)
T ss_pred HHHHHHHHHHHH-HHHHHHHcccccee
Confidence 333444444443 34555554334433
No 96
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=47.82 E-value=14 Score=27.78 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.2
Q ss_pred hhhhhh
Q 026255 199 GYAGGL 204 (241)
Q Consensus 199 ~~~~~~ 204 (241)
|+++|+
T Consensus 65 GIVfgi 70 (155)
T PF10873_consen 65 GIVFGI 70 (155)
T ss_pred eeehhh
Confidence 333333
No 97
>PTZ00046 rifin; Provisional
Probab=47.61 E-value=18 Score=31.50 Aligned_cols=15 Identities=27% Similarity=0.109 Sum_probs=6.8
Q ss_pred hhhHHHHHHhhhhhh
Q 026255 217 GIIGWILEKLGMQQK 231 (241)
Q Consensus 217 ~~~~w~~~~~~~~~~ 231 (241)
|...-|.|++++.++
T Consensus 335 YLILRYRRKKKMkKK 349 (358)
T PTZ00046 335 YLILRYRRKKKMKKK 349 (358)
T ss_pred HHHHHhhhcchhHHH
Confidence 444445554444433
No 98
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=47.59 E-value=14 Score=25.37 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHHHHHhhhhhHHHHHHh
Q 026255 209 VLGFNFSTGIIGWILEKL 226 (241)
Q Consensus 209 ~~~~~~~~~~~~w~~~~~ 226 (241)
++++.+++....|+.|-+
T Consensus 45 lvaVg~~YL~y~~fLkDl 62 (91)
T PF01708_consen 45 LVAVGCLYLAYTWFLKDL 62 (91)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445567776643
No 99
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=44.82 E-value=22 Score=30.95 Aligned_cols=14 Identities=21% Similarity=0.041 Sum_probs=6.2
Q ss_pred hhhHHHHHHhhhhh
Q 026255 217 GIIGWILEKLGMQQ 230 (241)
Q Consensus 217 ~~~~w~~~~~~~~~ 230 (241)
|...-|.|++++.+
T Consensus 330 YLILRYRRKKKMkK 343 (353)
T TIGR01477 330 YLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHhhhcchhHH
Confidence 44444555444433
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.75 E-value=14 Score=34.10 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=27.6
Q ss_pred CCccceeeccCCcCCCC--CchhHhhccccceEeccCC--cccCCCCCC--CccCccCcccccCCCC
Q 026255 97 LTNLESLDLSNNKFSGR--IPQQLVELTFLEFFNVSDN--YLTGPIPQG--KQFATFDNTSFDANSG 157 (241)
Q Consensus 97 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~l~~N--~l~g~~p~~--~~~~~l~~~~~~~n~~ 157 (241)
.+.+..+.|++|++... +...-...|.|+.|+|++| .+. ..++. .....+..+-++|||.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcc
Confidence 34555566666665421 1111122456666666666 222 11111 2223445556666663
No 101
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.53 E-value=30 Score=23.59 Aligned_cols=12 Identities=8% Similarity=-0.178 Sum_probs=5.9
Q ss_pred HhhhhhHHHHHH
Q 026255 214 FSTGIIGWILEK 225 (241)
Q Consensus 214 ~~~~~~~w~~~~ 225 (241)
++.|...|..|+
T Consensus 48 VilwfvCC~kRk 59 (94)
T PF05393_consen 48 VILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHHhh
Confidence 334555665443
No 102
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=43.51 E-value=1.9 Score=39.23 Aligned_cols=38 Identities=37% Similarity=0.390 Sum_probs=17.3
Q ss_pred CccceeeccCCcCCCCCch----hHhhccccceEeccCCccc
Q 026255 98 TNLESLDLSNNKFSGRIPQ----QLVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 98 ~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~l~~N~l~ 135 (241)
..++.++++.|.|+..-.. .+..++.++.+.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3445555555555433222 2223344555555555543
No 103
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.26 E-value=13 Score=34.26 Aligned_cols=62 Identities=24% Similarity=0.230 Sum_probs=35.4
Q ss_pred cCccEEEccCCCCCccc--hhhhcCCCCCceEecccC--cCCCCCcc--ccCCCCccceeeccCCcCCCC
Q 026255 50 DILTGIILSNNRFDEAI--PASISNLKGLQVLNLHNN--NLQGHIPS--CLGNLTNLESLDLSNNKFSGR 113 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~--p~~~~~l~~L~~L~Ls~N--~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~ 113 (241)
+.+..+.|++|++.... ...-...++|..|+|++| .+. ..+. .++. ..|++|.+.+|.+...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcC-CCHHHeeecCCccccc
Confidence 44667778888775421 112234577888888888 332 1111 1222 3477778888877643
No 104
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=40.31 E-value=20 Score=31.83 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=6.4
Q ss_pred hhhhhhHHHHHHHHH
Q 026255 200 YAGGLVAGLVLGFNF 214 (241)
Q Consensus 200 ~~~~~~~~~~~~~~~ 214 (241)
+++.+||+.+|+|++
T Consensus 374 vavvvvVgglvGfLc 388 (397)
T PF03302_consen 374 VAVVVVVGGLVGFLC 388 (397)
T ss_pred ehhHHHHHHHHHHHh
Confidence 333334444444443
No 105
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.23 E-value=27 Score=22.13 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=6.9
Q ss_pred hhhhhhHHHHHHHHH
Q 026255 200 YAGGLVAGLVLGFNF 214 (241)
Q Consensus 200 ~~~~~~~~~~~~~~~ 214 (241)
+.+++++|++++.++
T Consensus 24 il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 24 ILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455544444
No 106
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.80 E-value=18 Score=30.78 Aligned_cols=9 Identities=0% Similarity=-0.533 Sum_probs=3.6
Q ss_pred hhhHHHHHH
Q 026255 217 GIIGWILEK 225 (241)
Q Consensus 217 ~~~~w~~~~ 225 (241)
+|.|-..+|
T Consensus 279 LRYRRKKKm 287 (299)
T PF02009_consen 279 LRYRRKKKM 287 (299)
T ss_pred HHHHHHhhh
Confidence 333443343
No 107
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=38.28 E-value=20 Score=28.91 Aligned_cols=23 Identities=4% Similarity=-0.089 Sum_probs=11.2
Q ss_pred ceeEeehhhhhhhHHHHHHHHHh
Q 026255 193 WKIILTGYAGGLVAGLVLGFNFS 215 (241)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~ 215 (241)
..+.+++.+++++++|++++++-
T Consensus 39 I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHHH
Confidence 33333444455555555555555
No 108
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=38.26 E-value=25 Score=24.29 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=11.3
Q ss_pred cceeEeehhhhhhhHHHHHHHHHhh
Q 026255 192 DWKIILTGYAGGLVAGLVLGFNFST 216 (241)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (241)
.|.+++.| +|+++.+++..++.+
T Consensus 41 yWpyLA~G--GG~iLilIii~Lv~C 63 (98)
T PF07204_consen 41 YWPYLAAG--GGLILILIIIALVCC 63 (98)
T ss_pred hhHHhhcc--chhhhHHHHHHHHHH
Confidence 67776655 344444444333333
No 109
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=37.71 E-value=38 Score=22.29 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHHhhhhhHHH
Q 026255 202 GGLVAGLVLGFNFSTGIIGWI 222 (241)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~w~ 222 (241)
.++++.+++.+.++.....+.
T Consensus 12 m~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 12 MGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333333333333
No 110
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=36.63 E-value=52 Score=26.44 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=5.4
Q ss_pred HHHhhhhhhh
Q 026255 223 LEKLGMQQKA 232 (241)
Q Consensus 223 ~~~~~~~~~~ 232 (241)
+-++++.+++
T Consensus 158 VS~LKrskQ~ 167 (227)
T PF05399_consen 158 VSSLKRSKQV 167 (227)
T ss_pred HHHHHHHHHh
Confidence 4455556664
No 111
>PHA03265 envelope glycoprotein D; Provisional
Probab=36.44 E-value=36 Score=29.57 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=10.8
Q ss_pred cceeEeehhhhhhhHHHHHHHHHh
Q 026255 192 DWKIILTGYAGGLVAGLVLGFNFS 215 (241)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~ 215 (241)
+...+.+.++.+++..++++++++
T Consensus 346 ~~~~~g~~ig~~i~glv~vg~il~ 369 (402)
T PHA03265 346 NSTFVGISVGLGIAGLVLVGVILY 369 (402)
T ss_pred CCcccceEEccchhhhhhhhHHHH
Confidence 344444444444444445555443
No 112
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.44 E-value=32 Score=25.36 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=13.9
Q ss_pred hhhhhhHHHHHHHHHhhhhhH
Q 026255 200 YAGGLVAGLVLGFNFSTGIIG 220 (241)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~ 220 (241)
.+.|+|+|++|++++.++..+
T Consensus 11 a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcch
Confidence 446677777788777665444
No 113
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=34.61 E-value=51 Score=24.80 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=4.6
Q ss_pred hhhhHHHHHHh
Q 026255 216 TGIIGWILEKL 226 (241)
Q Consensus 216 ~~~~~w~~~~~ 226 (241)
.....|+.+++
T Consensus 46 ivli~lcssRK 56 (189)
T PF05568_consen 46 IVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHhhhh
Confidence 33344544433
No 114
>PRK11677 hypothetical protein; Provisional
Probab=34.45 E-value=28 Score=25.95 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHhhhh
Q 026255 200 YAGGLVAGLVLGFNFSTGI 218 (241)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ 218 (241)
+++++++|+++|+++.++.
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3466677777777776653
No 115
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.03 E-value=31 Score=25.38 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHHhhhh
Q 026255 201 AGGLVAGLVLGFNFSTGI 218 (241)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (241)
++++++|++||+++.++.
T Consensus 3 ~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355666666666665543
No 116
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=32.46 E-value=72 Score=18.34 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=8.7
Q ss_pred CccCcCccEEEccC
Q 026255 46 NKIPDILTGIILSN 59 (241)
Q Consensus 46 ~~~~~~L~~L~L~~ 59 (241)
..++.+++.|.+.+
T Consensus 8 ~~iP~~l~~L~~g~ 21 (44)
T PF05725_consen 8 GSIPSSLKSLIFGS 21 (44)
T ss_pred CeeCCCCeEEEECC
Confidence 34566777777733
No 117
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=32.31 E-value=33 Score=30.43 Aligned_cols=85 Identities=24% Similarity=0.132 Sum_probs=54.0
Q ss_pred CcCccEEEccCCCCCcc--chhhhcCCCCCceEecccC-cCCCCCc----cccCCCCccceeeccCCc-CCCCCchhHhh
Q 026255 49 PDILTGIILSNNRFDEA--IPASISNLKGLQVLNLHNN-NLQGHIP----SCLGNLTNLESLDLSNNK-FSGRIPQQLVE 120 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~ 120 (241)
.++++.+.+..+.--.. .-......+.|+.|+++++ ......+ .....+.+|+.++++... ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56788887777643222 2344567899999999873 1111111 233456889999999888 55333333433
Q ss_pred -ccccceEeccCCc
Q 026255 121 -LTFLEFFNVSDNY 133 (241)
Q Consensus 121 -l~~L~~L~l~~N~ 133 (241)
+++|+.|.+.++.
T Consensus 267 ~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 267 RCPNLETLSLSNCS 280 (482)
T ss_pred hCCCcceEccCCCC
Confidence 7899999977665
No 118
>PF15069 FAM163: FAM163 family
Probab=31.07 E-value=91 Score=23.44 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q 026255 202 GGLVAGLVLGFNFSTGIIGWILEKLGMQQKA 232 (241)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 232 (241)
+|+++++++..++......-...|++++...
T Consensus 10 GgILAtVILLcIIaVLCYCRLQYYCCKK~~s 40 (143)
T PF15069_consen 10 GGILATVILLCIIAVLCYCRLQYYCCKKNES 40 (143)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhccCC
Confidence 3444444333333333344444456666433
No 119
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=30.34 E-value=76 Score=20.35 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHHH
Q 026255 202 GGLVAGLVLGFNF 214 (241)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (241)
.++++|+++++.+
T Consensus 5 lali~G~~~Gff~ 17 (64)
T PF03672_consen 5 LALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555554443
No 120
>PTZ00370 STEVOR; Provisional
Probab=30.33 E-value=57 Score=27.56 Aligned_cols=14 Identities=7% Similarity=0.199 Sum_probs=6.9
Q ss_pred hhHH-HHHHhhhhhh
Q 026255 218 IIGW-ILEKLGMQQK 231 (241)
Q Consensus 218 ~~~w-~~~~~~~~~~ 231 (241)
...| |.|++..|+.
T Consensus 274 lYiwlyrrRK~swkh 288 (296)
T PTZ00370 274 LYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHhhcchhHH
Confidence 4566 3444455544
No 121
>PF14851 FAM176: FAM176 family
Probab=30.15 E-value=22 Score=27.13 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHhhhhhHH
Q 026255 202 GGLVAGLVLGFNFSTGIIGW 221 (241)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~w 221 (241)
.||.+|+++.++++..+..|
T Consensus 28 ~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 28 SGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHhhhee
Confidence 34444445555544444444
No 122
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.24 E-value=50 Score=16.46 Aligned_cols=12 Identities=50% Similarity=0.614 Sum_probs=6.1
Q ss_pred CccceeeccCCc
Q 026255 98 TNLESLDLSNNK 109 (241)
Q Consensus 98 ~~L~~L~Ls~N~ 109 (241)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 345555555553
No 123
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=24.99 E-value=88 Score=18.54 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=6.5
Q ss_pred ceeEeehhhhhhhHHH
Q 026255 193 WKIILTGYAGGLVAGL 208 (241)
Q Consensus 193 ~~~~~~~~~~~~~~~~ 208 (241)
|..++..+.+++++.+
T Consensus 2 Wl~V~~iilg~~ll~~ 17 (49)
T PF05624_consen 2 WLFVVLIILGALLLLL 17 (49)
T ss_pred eEEEeHHHHHHHHHHH
Confidence 4444444333333333
No 124
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.59 E-value=65 Score=31.23 Aligned_cols=8 Identities=0% Similarity=-0.355 Sum_probs=3.7
Q ss_pred HHHHHHhh
Q 026255 220 GWILEKLG 227 (241)
Q Consensus 220 ~w~~~~~~ 227 (241)
.||.|+++
T Consensus 294 l~yCrrkc 301 (807)
T PF10577_consen 294 LCYCRRKC 301 (807)
T ss_pred HHhhhccc
Confidence 45554443
No 125
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=23.48 E-value=17 Score=25.20 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=4.0
Q ss_pred hhhhhhccc
Q 026255 228 MQQKATRRG 236 (241)
Q Consensus 228 ~~~~~~~r~ 236 (241)
.|.++.+|+
T Consensus 35 swakpykra 43 (126)
T PF13120_consen 35 SWAKPYKRA 43 (126)
T ss_pred eecChhhHH
Confidence 344444444
No 126
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=22.16 E-value=1e+02 Score=27.53 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=7.3
Q ss_pred eehhhhhhhHHHHHHHH
Q 026255 197 LTGYAGGLVAGLVLGFN 213 (241)
Q Consensus 197 ~~~~~~~~~~~~~~~~~ 213 (241)
+.|..+++++++|++.+
T Consensus 67 aagFfvaflvslVL~~l 83 (429)
T PF12297_consen 67 AAGFFVAFLVSLVLTWL 83 (429)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 127
>PRK00523 hypothetical protein; Provisional
Probab=22.06 E-value=1.8e+02 Score=19.12 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 026255 220 GWILEKL 226 (241)
Q Consensus 220 ~w~~~~~ 226 (241)
+++.+++
T Consensus 28 k~~~k~l 34 (72)
T PRK00523 28 KMFKKQI 34 (72)
T ss_pred HHHHHHH
Confidence 4444433
No 128
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=22.02 E-value=1.6e+02 Score=18.58 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHhhhhhHHHHHH
Q 026255 202 GGLVAGLVLGFNFSTGIIGWILEK 225 (241)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~w~~~~ 225 (241)
..+.+|+++++++..+...|.+.+
T Consensus 38 lt~MiGiWiVilFLtWf~lwm~fK 61 (67)
T PF10854_consen 38 LTIMIGIWIVILFLTWFLLWMVFK 61 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766666776543
No 129
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=22.01 E-value=1.5e+02 Score=17.65 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhhhHHHH
Q 026255 206 AGLVLGFNFSTGIIGWIL 223 (241)
Q Consensus 206 ~~~~~~~~~~~~~~~w~~ 223 (241)
.+.++++++.+..+.|..
T Consensus 26 g~avL~v~V~i~v~kwiR 43 (46)
T PF10389_consen 26 GGAVLGVIVGIAVYKWIR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444455543
No 130
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=21.94 E-value=51 Score=22.31 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=8.3
Q ss_pred cceeEeehhhhhhhHHHH
Q 026255 192 DWKIILTGYAGGLVAGLV 209 (241)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~ 209 (241)
.|..++.+.+++++.+.+
T Consensus 15 ~~yyiiA~gga~llL~~v 32 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAV 32 (87)
T ss_pred eeeHHHhhccHHHHHHHH
Confidence 555555444444444333
No 131
>PHA02902 putative IMV membrane protein; Provisional
Probab=21.89 E-value=1.5e+02 Score=19.03 Aligned_cols=6 Identities=0% Similarity=-0.562 Sum_probs=2.6
Q ss_pred HHHHHh
Q 026255 221 WILEKL 226 (241)
Q Consensus 221 w~~~~~ 226 (241)
-|.|++
T Consensus 23 ~YrR~k 28 (70)
T PHA02902 23 AYKRYK 28 (70)
T ss_pred HHHHhc
Confidence 344443
No 132
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.47 E-value=70 Score=24.26 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=7.8
Q ss_pred hhhhhhHHHHHHHHHhh
Q 026255 200 YAGGLVAGLVLGFNFST 216 (241)
Q Consensus 200 ~~~~~~~~~~~~~~~~~ 216 (241)
+++|+++..+++.++.+
T Consensus 11 ~~ag~a~~~flgYciYF 27 (148)
T TIGR00985 11 IAAGIAAAAFLGYAIYF 27 (148)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444455555443
No 133
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=20.39 E-value=3.1e+02 Score=23.22 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=7.5
Q ss_pred cceeEeehhhhhhhHHHHH
Q 026255 192 DWKIILTGYAGGLVAGLVL 210 (241)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~ 210 (241)
.|+ +++|.++|+++.+++
T Consensus 212 ~W~-iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 212 WWK-IVVGVVGGVVLLGLL 229 (278)
T ss_pred eEE-EEEEehHHHHHHHHH
Confidence 344 344444444443333
Done!