Query 026255
Match_columns 241
No_of_seqs 333 out of 2636
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.8 7.4E-22 2.5E-26 185.9 8.2 123 49-172 631-753 (768)
2 3j0a_A TOLL-like receptor 5; m 99.8 8.3E-19 2.8E-23 166.8 10.1 92 68-163 474-565 (844)
3 1ogq_A PGIP-2, polygalacturona 99.8 6.1E-19 2.1E-23 149.4 8.2 114 52-167 199-312 (313)
4 2v9t_B SLIT homolog 2 protein 99.7 6.5E-18 2.2E-22 136.1 10.9 116 48-163 54-170 (220)
5 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.5E-22 134.9 10.9 116 48-163 55-171 (220)
6 3rfs_A Internalin B, repeat mo 99.7 4E-17 1.4E-21 135.4 13.6 159 4-162 57-222 (272)
7 3e6j_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 132.0 12.9 114 48-162 62-176 (229)
8 3m19_A Variable lymphocyte rec 99.7 5.5E-17 1.9E-21 132.9 13.6 113 48-160 81-194 (251)
9 1w8a_A SLIT protein; signaling 99.7 1.1E-17 3.8E-22 131.9 8.9 117 47-163 26-144 (192)
10 2wfh_A SLIT homolog 2 protein 99.7 2E-17 6.8E-22 130.7 10.3 123 39-162 20-143 (193)
11 1p9a_G Platelet glycoprotein I 99.7 4.5E-17 1.5E-21 136.5 12.7 158 5-162 50-212 (290)
12 2o6q_A Variable lymphocyte rec 99.7 5.7E-17 2E-21 134.2 13.2 158 5-162 56-222 (270)
13 2o6s_A Variable lymphocyte rec 99.7 2.5E-16 8.5E-21 125.3 13.4 115 48-162 50-165 (208)
14 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 123.7 11.1 118 45-162 23-141 (177)
15 4g8a_A TOLL-like receptor 4; l 99.7 1.7E-16 5.8E-21 145.0 10.9 116 47-162 466-584 (635)
16 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-16 5.3E-21 132.4 8.8 159 5-163 75-243 (285)
17 3v47_A TOLL-like receptor 5B a 99.7 2.9E-16 1E-20 138.7 10.8 114 49-162 298-412 (455)
18 1w8a_A SLIT protein; signaling 99.6 1.7E-15 5.8E-20 119.3 11.4 117 47-163 51-167 (192)
19 2z66_A Variable lymphocyte rec 99.6 8.6E-16 2.9E-20 129.1 9.3 157 6-162 97-265 (306)
20 3vq2_A TLR4, TOLL-like recepto 99.6 7E-16 2.4E-20 141.0 9.3 158 5-163 394-563 (606)
21 4fcg_A Uncharacterized protein 99.6 2.4E-15 8.2E-20 128.1 11.7 107 49-157 149-265 (328)
22 3zyi_A Leucine-rich repeat-con 99.6 8.9E-16 3E-20 136.0 9.0 113 49-163 195-308 (452)
23 2xot_A Amphoterin-induced prot 99.6 5.6E-16 1.9E-20 133.6 7.4 151 12-162 41-206 (361)
24 3rfs_A Internalin B, repeat mo 99.6 7.1E-15 2.4E-19 121.7 13.6 153 6-158 37-194 (272)
25 2v70_A SLIT-2, SLIT homolog 2 99.6 2.2E-15 7.5E-20 121.2 10.2 128 12-139 34-170 (220)
26 2z62_A TOLL-like receptor 4, v 99.6 2.5E-15 8.4E-20 124.5 10.5 74 49-122 99-173 (276)
27 3oja_A Leucine-rich immune mol 99.6 5.2E-16 1.8E-20 139.1 6.8 110 49-161 143-253 (487)
28 2v9t_B SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 119.6 10.6 124 35-158 17-141 (220)
29 3zyj_A Leucine-rich repeat-con 99.6 3E-15 1E-19 132.2 10.6 112 49-162 184-296 (440)
30 3e6j_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 119.5 11.2 124 34-158 24-148 (229)
31 3m19_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 119.3 12.8 110 49-158 58-168 (251)
32 3g39_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 114.4 9.8 94 46-139 26-119 (170)
33 4fcg_A Uncharacterized protein 99.6 6.4E-15 2.2E-19 125.4 11.1 155 6-162 123-294 (328)
34 4g8a_A TOLL-like receptor 4; l 99.6 3.3E-15 1.1E-19 136.4 9.7 124 34-157 36-160 (635)
35 3rgz_A Protein brassinosteroid 99.6 3.5E-15 1.2E-19 140.5 10.0 154 9-162 393-555 (768)
36 3g39_A Variable lymphocyte rec 99.6 6.6E-15 2.2E-19 113.8 9.7 109 51-162 10-119 (170)
37 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.5E-20 128.4 6.3 110 49-161 143-253 (317)
38 1xku_A Decorin; proteoglycan, 99.6 1.3E-14 4.5E-19 123.1 11.9 152 7-159 142-307 (330)
39 4ezg_A Putative uncharacterize 99.6 5.6E-15 1.9E-19 116.6 9.0 146 8-156 42-192 (197)
40 2z63_A TOLL-like receptor 4, v 99.6 4.4E-15 1.5E-19 134.5 9.2 157 7-163 370-536 (570)
41 1ozn_A Reticulon 4 receptor; N 99.6 1.6E-14 5.4E-19 120.2 11.5 108 49-156 79-188 (285)
42 1ziw_A TOLL-like receptor 3; i 99.6 6.9E-15 2.4E-19 136.2 10.1 158 6-163 450-627 (680)
43 2o6s_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 113.2 12.2 125 34-158 12-137 (208)
44 1ogq_A PGIP-2, polygalacturona 99.6 3E-15 1E-19 126.5 6.6 150 6-156 97-255 (313)
45 2r9u_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 112.3 9.9 103 35-137 18-120 (174)
46 2r9u_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 111.9 10.2 108 52-162 14-122 (174)
47 3t6q_A CD180 antigen; protein- 99.6 4.9E-15 1.7E-19 135.4 7.7 157 5-162 395-564 (606)
48 2ft3_A Biglycan; proteoglycan, 99.5 1.2E-14 4E-19 123.6 9.3 153 6-159 143-308 (332)
49 3o6n_A APL1; leucine-rich repe 99.5 1.9E-14 6.6E-19 124.8 10.8 109 49-161 247-355 (390)
50 2o6q_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 115.8 13.1 108 49-156 84-192 (270)
51 2xot_A Amphoterin-induced prot 99.5 1.5E-14 5.2E-19 124.6 9.4 144 14-157 22-175 (361)
52 2id5_A Lingo-1, leucine rich r 99.5 1.2E-14 4E-19 129.3 8.9 112 51-162 225-337 (477)
53 1p9a_G Platelet glycoprotein I 99.5 5.2E-14 1.8E-18 117.8 11.7 107 49-156 76-183 (290)
54 2z7x_B TOLL-like receptor 1, v 99.5 3.7E-14 1.2E-18 127.4 11.1 152 7-162 321-485 (520)
55 4eco_A Uncharacterized protein 99.5 7.4E-14 2.5E-18 128.9 13.4 106 51-160 489-602 (636)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.4E-14 1.2E-18 129.0 11.0 152 7-162 350-514 (562)
57 3oja_B Anopheles plasmodium-re 99.5 3.4E-14 1.1E-18 130.2 10.6 109 49-161 253-361 (597)
58 2o6r_A Variable lymphocyte rec 99.5 4.8E-14 1.7E-18 109.2 9.9 92 48-139 50-141 (177)
59 3v47_A TOLL-like receptor 5B a 99.5 3.1E-14 1.1E-18 125.6 9.4 109 50-158 275-384 (455)
60 2wfh_A SLIT homolog 2 protein 99.5 7.6E-14 2.6E-18 110.0 10.3 88 49-136 53-140 (193)
61 2ell_A Acidic leucine-rich nuc 99.5 4E-14 1.4E-18 108.6 8.4 105 49-156 48-158 (168)
62 2z66_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 118.8 8.4 152 8-159 76-237 (306)
63 2ifg_A High affinity nerve gro 99.5 5.1E-14 1.8E-18 120.3 9.0 85 50-135 31-116 (347)
64 2z81_A CD282 antigen, TOLL-lik 99.5 4.1E-14 1.4E-18 127.7 8.8 151 8-162 332-514 (549)
65 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 1E-18 110.5 6.6 130 6-156 15-151 (176)
66 2je0_A Acidic leucine-rich nuc 99.5 6.2E-14 2.1E-18 105.5 7.9 106 49-156 16-124 (149)
67 2ell_A Acidic leucine-rich nuc 99.5 8.5E-14 2.9E-18 106.8 8.2 110 47-158 21-133 (168)
68 4eco_A Uncharacterized protein 99.5 1.5E-14 5.2E-19 133.5 4.4 150 6-158 202-390 (636)
69 3zyj_A Leucine-rich repeat-con 99.5 2.3E-13 7.7E-18 120.1 11.5 104 50-155 136-241 (440)
70 2id5_A Lingo-1, leucine rich r 99.5 1.6E-13 5.6E-18 121.9 10.1 152 5-156 51-211 (477)
71 2je0_A Acidic leucine-rich nuc 99.5 9.8E-14 3.4E-18 104.4 7.3 114 9-139 16-130 (149)
72 1wwl_A Monocyte differentiatio 99.5 1.3E-13 4.5E-18 116.3 8.6 149 7-157 118-286 (312)
73 3zyi_A Leucine-rich repeat-con 99.5 3E-13 1E-17 119.7 11.2 106 49-155 122-228 (452)
74 2ft3_A Biglycan; proteoglycan, 99.5 9.9E-13 3.4E-17 111.6 13.8 151 6-157 74-276 (332)
75 2z62_A TOLL-like receptor 4, v 99.5 2.5E-13 8.6E-18 112.3 9.8 109 49-157 51-161 (276)
76 4ezg_A Putative uncharacterize 99.4 9.4E-14 3.2E-18 109.5 6.7 109 47-157 63-171 (197)
77 3t6q_A CD180 antigen; protein- 99.4 2.3E-13 8E-18 124.2 10.3 107 49-155 56-163 (606)
78 1wwl_A Monocyte differentiatio 99.4 1.2E-13 4.2E-18 116.5 7.7 151 8-158 93-266 (312)
79 3vq2_A TLR4, TOLL-like recepto 99.4 2.6E-13 8.9E-18 123.9 10.0 109 49-157 55-165 (606)
80 3oja_B Anopheles plasmodium-re 99.4 2.6E-13 9E-18 124.2 9.8 90 48-137 97-186 (597)
81 1xku_A Decorin; proteoglycan, 99.4 1.3E-12 4.6E-17 110.7 13.2 151 6-156 72-251 (330)
82 4ecn_A Leucine-rich repeat pro 99.4 6E-13 2.1E-17 126.6 12.1 106 49-157 696-818 (876)
83 2z80_A TOLL-like receptor 2, v 99.4 2.4E-13 8.3E-18 116.4 8.6 107 49-155 99-208 (353)
84 4glp_A Monocyte differentiatio 99.4 2.5E-13 8.5E-18 114.4 8.2 145 8-157 143-306 (310)
85 1h6t_A Internalin B; cell adhe 99.4 4.8E-13 1.6E-17 111.9 9.8 102 49-157 111-212 (291)
86 3o6n_A APL1; leucine-rich repe 99.4 3.5E-13 1.2E-17 116.9 9.3 88 49-136 92-179 (390)
87 2z80_A TOLL-like receptor 2, v 99.4 5.1E-13 1.7E-17 114.4 10.0 110 45-155 47-159 (353)
88 2z81_A CD282 antigen, TOLL-lik 99.4 4.3E-13 1.5E-17 121.0 9.6 108 49-156 49-159 (549)
89 2xwt_C Thyrotropin receptor; s 99.4 2.4E-13 8.3E-18 110.2 7.2 143 11-156 32-190 (239)
90 3oja_A Leucine-rich immune mol 99.4 1.8E-13 6.3E-18 122.5 6.7 107 49-157 119-226 (487)
91 1dce_A Protein (RAB geranylger 99.4 9.6E-13 3.3E-17 119.9 11.5 88 49-139 462-550 (567)
92 4fmz_A Internalin; leucine ric 99.4 1E-12 3.6E-17 111.9 10.7 147 6-158 173-324 (347)
93 4ecn_A Leucine-rich repeat pro 99.4 1.5E-13 5.3E-18 130.6 6.1 149 6-158 444-632 (876)
94 1h6u_A Internalin H; cell adhe 99.4 1.6E-12 5.4E-17 109.6 11.7 81 71-156 148-228 (308)
95 1ziw_A TOLL-like receptor 3; i 99.4 1.2E-12 4E-17 121.3 11.5 108 49-156 72-182 (680)
96 1h6u_A Internalin H; cell adhe 99.4 8.7E-13 3E-17 111.2 9.7 128 6-158 81-208 (308)
97 1xeu_A Internalin C; cellular 99.4 1.5E-12 5E-17 107.5 10.7 147 6-160 37-187 (263)
98 4glp_A Monocyte differentiatio 99.4 3.3E-13 1.1E-17 113.7 6.9 109 49-158 144-264 (310)
99 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.6E-17 120.4 10.7 147 4-157 59-209 (605)
100 4b8c_D Glucose-repressible alc 99.4 2.4E-13 8.3E-18 127.3 5.9 89 50-140 270-359 (727)
101 4b8c_D Glucose-repressible alc 99.4 9.5E-13 3.3E-17 123.3 9.7 106 49-158 223-329 (727)
102 2z7x_B TOLL-like receptor 1, v 99.4 6.1E-13 2.1E-17 119.4 8.0 104 49-157 44-150 (520)
103 2xwt_C Thyrotropin receptor; s 99.4 1.5E-12 5.2E-17 105.4 9.6 151 5-158 50-218 (239)
104 3j0a_A TOLL-like receptor 5; m 99.4 7.5E-13 2.5E-17 125.8 8.9 111 48-158 46-161 (844)
105 2z63_A TOLL-like receptor 4, v 99.4 1.3E-12 4.6E-17 118.1 9.7 109 49-157 51-161 (570)
106 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1E-12 3.5E-17 119.3 8.5 84 49-135 51-134 (562)
107 3o53_A Protein LRIM1, AGAP0063 99.4 4.9E-13 1.7E-17 113.0 5.8 106 49-156 119-225 (317)
108 1xeu_A Internalin C; cellular 99.4 1.9E-12 6.6E-17 106.7 9.0 146 6-159 15-164 (263)
109 1h6t_A Internalin B; cell adhe 99.3 4.7E-12 1.6E-16 105.9 9.8 144 7-157 43-190 (291)
110 1a9n_A U2A', U2A'; complex (nu 99.3 2.5E-12 8.4E-17 99.5 7.3 106 49-158 18-126 (176)
111 1dce_A Protein (RAB geranylger 99.3 2.7E-12 9.3E-17 116.9 8.2 103 51-158 442-546 (567)
112 1o6v_A Internalin A; bacterial 99.3 6.1E-12 2.1E-16 111.7 9.6 104 49-159 286-389 (466)
113 2ifg_A High affinity nerve gro 99.3 5E-12 1.7E-16 107.9 8.6 108 53-162 11-120 (347)
114 4fmz_A Internalin; leucine ric 99.3 1.4E-11 4.7E-16 104.9 10.4 145 6-157 151-299 (347)
115 1o6v_A Internalin A; bacterial 99.3 2.6E-11 8.7E-16 107.7 11.6 100 49-155 242-341 (466)
116 1m9s_A Internalin B; cell inva 99.3 1.2E-11 4.1E-16 113.5 9.6 145 6-157 39-187 (605)
117 3bz5_A Internalin-J, INLJ; leu 99.2 4.5E-11 1.5E-15 106.1 12.2 80 49-137 169-248 (457)
118 3cvr_A Invasion plasmid antige 99.2 2.5E-11 8.7E-16 110.5 10.2 97 49-158 139-243 (571)
119 3bz5_A Internalin-J, INLJ; leu 99.2 2E-11 6.9E-16 108.4 9.1 38 49-89 211-248 (457)
120 3cvr_A Invasion plasmid antige 99.2 8.1E-11 2.8E-15 107.2 11.3 77 47-135 97-173 (571)
121 4ay9_X Follicle-stimulating ho 99.2 2.8E-11 9.6E-16 103.6 7.6 107 33-139 13-121 (350)
122 3g06_A SSPH2 (leucine-rich rep 99.2 6.4E-11 2.2E-15 108.9 9.2 79 50-137 221-299 (622)
123 3g06_A SSPH2 (leucine-rich rep 99.1 2E-10 6.8E-15 105.7 10.9 76 74-158 221-297 (622)
124 1jl5_A Outer protein YOPM; leu 99.1 2.2E-10 7.5E-15 101.6 10.7 137 6-159 233-371 (454)
125 1jl5_A Outer protein YOPM; leu 99.1 8.5E-11 2.9E-15 104.3 7.7 136 10-159 257-410 (454)
126 1ds9_A Outer arm dynein; leuci 99.1 1.7E-12 5.8E-17 102.3 -4.5 107 49-160 47-155 (198)
127 2ca6_A RAN GTPase-activating p 99.1 6.4E-12 2.2E-16 108.8 -1.4 111 49-159 186-317 (386)
128 2ast_B S-phase kinase-associat 99.1 2.5E-11 8.6E-16 102.7 1.7 151 6-156 89-258 (336)
129 2ast_B S-phase kinase-associat 99.0 2.2E-11 7.5E-16 103.1 -0.6 148 10-157 70-234 (336)
130 2ca6_A RAN GTPase-activating p 99.0 8.3E-11 2.8E-15 101.7 2.7 130 10-139 159-320 (386)
131 3goz_A Leucine-rich repeat-con 99.0 1.2E-10 4E-15 100.1 2.6 149 9-157 21-208 (362)
132 3goz_A Leucine-rich repeat-con 99.0 8.1E-11 2.8E-15 101.1 1.1 85 51-135 52-151 (362)
133 1ds9_A Outer arm dynein; leuci 99.0 5.7E-12 1.9E-16 99.3 -5.7 104 50-157 18-127 (198)
134 4ay9_X Follicle-stimulating ho 98.9 1.8E-09 6E-14 92.4 7.4 145 6-154 50-232 (350)
135 1z7x_W Ribonuclease inhibitor; 98.8 1.2E-10 4E-15 102.7 -4.6 108 49-156 255-381 (461)
136 1z7x_W Ribonuclease inhibitor; 98.8 5.3E-10 1.8E-14 98.5 -0.5 128 8-135 254-411 (461)
137 3sb4_A Hypothetical leucine ri 98.7 1.7E-08 5.8E-13 85.4 6.3 85 49-135 225-310 (329)
138 3rw6_A Nuclear RNA export fact 98.7 2.5E-08 8.4E-13 82.2 6.0 67 71-139 167-237 (267)
139 3un9_A NLR family member X1; l 98.6 5.1E-09 1.7E-13 90.5 1.3 108 49-156 125-250 (372)
140 3un9_A NLR family member X1; l 98.6 6.1E-10 2.1E-14 96.3 -6.0 86 50-135 155-252 (372)
141 3rw6_A Nuclear RNA export fact 98.5 1.9E-08 6.4E-13 82.9 0.7 78 49-128 169-257 (267)
142 3sb4_A Hypothetical leucine ri 98.3 4.9E-07 1.7E-11 76.4 5.7 103 9-129 225-328 (329)
143 1io0_A Tropomodulin; LRR prote 98.3 6.8E-08 2.3E-12 75.2 0.3 85 50-134 65-163 (185)
144 3ogk_B Coronatine-insensitive 98.1 7.8E-07 2.7E-11 80.6 2.3 63 73-135 462-526 (592)
145 1io0_A Tropomodulin; LRR prote 98.1 1.7E-06 5.7E-11 67.2 3.1 87 49-135 35-136 (185)
146 3ogk_B Coronatine-insensitive 98.0 1.5E-06 5E-11 78.8 1.6 60 93-153 265-326 (592)
147 3e4g_A ATP synthase subunit S, 97.9 3.7E-06 1.3E-10 64.7 2.1 83 51-133 62-150 (176)
148 2p1m_B Transport inhibitor res 97.9 1.1E-06 3.7E-11 79.6 -1.7 87 70-157 428-518 (594)
149 2p1m_B Transport inhibitor res 97.8 3.3E-06 1.1E-10 76.4 1.2 86 49-135 431-519 (594)
150 4fdw_A Leucine rich hypothetic 97.7 5.7E-05 2E-09 65.7 7.2 123 5-130 175-308 (401)
151 3rfe_A Platelet glycoprotein I 97.6 6.5E-05 2.2E-09 54.8 5.1 56 54-111 12-68 (130)
152 4fdw_A Leucine rich hypothetic 97.5 0.00011 3.9E-09 63.8 6.2 104 50-156 248-356 (401)
153 2ra8_A Uncharacterized protein 97.5 2.1E-05 7.1E-10 67.5 1.4 39 97-135 251-292 (362)
154 2ra8_A Uncharacterized protein 97.5 3.5E-05 1.2E-09 66.1 2.0 64 72-135 250-320 (362)
155 3rfe_A Platelet glycoprotein I 97.3 0.00034 1.2E-08 50.9 5.3 37 99-135 32-68 (130)
156 4fs7_A Uncharacterized protein 96.4 0.0081 2.8E-07 51.5 7.6 80 49-131 296-375 (394)
157 4gt6_A Cell surface protein; l 96.3 0.018 6.2E-07 49.3 9.4 82 49-133 287-368 (394)
158 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0017 5.9E-08 50.7 2.5 84 49-132 40-136 (197)
159 4h09_A Hypothetical leucine ri 96.1 0.008 2.7E-07 51.1 6.0 60 68-128 280-339 (379)
160 3e4g_A ATP synthase subunit S, 96.0 0.0034 1.2E-07 48.1 2.5 83 74-156 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0064 2.2E-07 47.4 3.1 86 49-134 69-169 (197)
162 4gt6_A Cell surface protein; l 95.3 0.016 5.4E-07 49.7 4.7 81 49-134 310-390 (394)
163 4fs7_A Uncharacterized protein 95.1 0.019 6.6E-07 49.2 4.4 75 49-127 319-393 (394)
164 4h09_A Hypothetical leucine ri 94.1 0.084 2.9E-06 44.7 6.2 80 51-132 241-320 (379)
165 2l2t_A Receptor tyrosine-prote 80.4 0.67 2.3E-05 26.5 1.3 22 193-214 9-30 (44)
166 2k1k_A Ephrin type-A receptor 68.1 3.6 0.00012 22.6 2.2 14 200-213 12-25 (38)
167 2knc_B Integrin beta-3; transm 46.5 12 0.00041 24.2 2.2 23 194-216 11-33 (79)
168 2k9j_B Integrin beta-3; transm 45.9 28 0.00095 19.5 3.4 8 202-209 14-21 (43)
169 2lz0_A Uncharacterized protein 41.6 41 0.0014 22.4 4.5 40 91-131 13-52 (100)
170 2lz0_A Uncharacterized protein 34.0 50 0.0017 21.9 4.0 46 61-107 7-52 (100)
171 2l9u_A Receptor tyrosine-prote 25.0 65 0.0022 17.0 2.5 8 205-212 13-20 (40)
172 2lx0_A Membrane fusion protein 22.0 86 0.003 15.6 2.9 9 218-226 21-29 (32)
173 4gnt_B Carbohydrate-responsive 20.3 49 0.0017 15.8 1.3 12 217-228 10-21 (26)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=7.4e-22 Score=185.95 Aligned_cols=123 Identities=41% Similarity=0.689 Sum_probs=117.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|||++|+++|.+|..++.++.|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCCCCCCCCCCCCCCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEA 172 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c~~~~~ 172 (241)
+++|+++|.+|...++.++....+.||+++||.|.. .|....+
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 999999999999999999999999999999999987 7976544
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=166.76 Aligned_cols=92 Identities=29% Similarity=0.421 Sum_probs=64.2
Q ss_pred hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCcc
Q 026255 68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 147 (241)
Q Consensus 68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l 147 (241)
..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.. +..+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L 549 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL 549 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence 3455666667777777777766666667777777777777777754444443 66777777777777666644 4578
Q ss_pred CcccccCCCCCCCCCC
Q 026255 148 DNTSFDANSGLCGRPL 163 (241)
Q Consensus 148 ~~~~~~~n~~lc~~~~ 163 (241)
..+++.+||+.|+|+.
T Consensus 550 ~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 550 SVLDITHNKFICECEL 565 (844)
T ss_dssp CEEEEEEECCCCSSSC
T ss_pred CEEEecCCCccccccc
Confidence 8899999999997754
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=6.1e-19 Score=149.37 Aligned_cols=114 Identities=38% Similarity=0.585 Sum_probs=103.2
Q ss_pred ccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccC
Q 026255 52 LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSD 131 (241)
Q Consensus 52 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 131 (241)
|++|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 88888888888888888888999999999999999866665 78899999999999999999999999999999999999
Q ss_pred CcccCCCCCCCccCccCcccccCCCCCCCCCCCCCC
Q 026255 132 NYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGC 167 (241)
Q Consensus 132 N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c 167 (241)
|+++|.+|....++.+..+++.+|+++||.|.. .|
T Consensus 278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999888999999999999999998775 36
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=6.5e-18 Score=136.10 Aligned_cols=116 Identities=24% Similarity=0.262 Sum_probs=103.5
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
-+++|++|+|++|.|++..|..|..+++|++|+|++|.++...+..|..+++|+.|++++|++++..|..|..+++|++|
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 36789999999999999889999999999999999999996666668899999999999999998888899999999999
Q ss_pred eccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255 128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL 163 (241)
Q Consensus 128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 163 (241)
++++|.+++..+.. ..+..+..+++.+|++.|+|..
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999999766643 4577888999999999998753
No 5
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=134.90 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=105.8
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
-+++|+.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 47889999999999999888899999999999999999998888889999999999999999998889999999999999
Q ss_pred eccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255 128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL 163 (241)
Q Consensus 128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 163 (241)
++++|.+++..|.. ..+..+..+++.+|++.|+++.
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999877754 4577888999999999998753
No 6
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=4e-17 Score=135.38 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=125.6
Q ss_pred CCCCCCccccccccCCCCccccc-ccc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCCc
Q 026255 4 FNTSELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGLQ 77 (241)
Q Consensus 4 ~~~~~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 77 (241)
..+.+++.|+.++++.|.++... +.. ....+.++...+.... ..-+++|++|++++|.+++..+..+..+++|+
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 44667788888899988887532 111 2233333333333222 23368899999999999988888889999999
Q ss_pred eEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCC
Q 026255 78 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANS 156 (241)
Q Consensus 78 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~ 156 (241)
+|++++|.+++..+..++.+++|+.|++++|++++..+..+..+++|++|++++|.+++..|.. ..+..+..+++.+|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 9999999999777777899999999999999999777777889999999999999999776654 567889999999999
Q ss_pred CCCCCC
Q 026255 157 GLCGRP 162 (241)
Q Consensus 157 ~lc~~~ 162 (241)
+.|.+|
T Consensus 217 ~~~~~~ 222 (272)
T 3rfs_A 217 WDCTCP 222 (272)
T ss_dssp BCCCTT
T ss_pred ccccCc
Confidence 998876
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=4.3e-17 Score=132.01 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=100.2
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
-+++|++|+|++|.|.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 3678999999999998877777899999999999999999777777899999999999999999 889889999999999
Q ss_pred eccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255 128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~ 162 (241)
++++|++++..+.. ..+..+..+++.+|++.|.++
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999655432 457788899999999999875
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=5.5e-17 Score=132.93 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=98.3
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
-+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 36789999999999998888888999999999999999997777778899999999999999997666678899999999
Q ss_pred eccCCcccCCCCCC-CccCccCcccccCCCCCCC
Q 026255 128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCG 160 (241)
Q Consensus 128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~ 160 (241)
++++|.+++..+.. ..+..+..+++.+|++.|.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999666533 4567888999999999887
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.1e-17 Score=131.93 Aligned_cols=117 Identities=22% Similarity=0.356 Sum_probs=100.3
Q ss_pred ccCcCccEEEccCCCCCccchh-hhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255 47 KIPDILTGIILSNNRFDEAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE 125 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 125 (241)
.++.++++|++++|.|++..+. .|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|+
T Consensus 26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 4456899999999999886654 488999999999999999988889999999999999999999987777788899999
Q ss_pred eEeccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255 126 FFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL 163 (241)
Q Consensus 126 ~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 163 (241)
+|++++|++++..|.. ..+..+..+++++|++.|.++.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999999999877764 4567888899999999988753
No 10
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=130.68 Aligned_cols=123 Identities=24% Similarity=0.338 Sum_probs=105.7
Q ss_pred cccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhH
Q 026255 39 KGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 118 (241)
Q Consensus 39 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 118 (241)
.++......+++++++|++++|.|+. +|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..|..|
T Consensus 20 ~~l~~ip~~~~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 20 KGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp SCCSSCCSCCCTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCCcCCCCCCCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 33333334456789999999999985 67889999999999999999998888889999999999999999998777889
Q ss_pred hhccccceEeccCCcccCCCCC-CCccCccCcccccCCCCCCCCC
Q 026255 119 VELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 119 ~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~lc~~~ 162 (241)
..+++|++|++++|.+++..+. ...+..+..+++.+|++.|+|.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9999999999999999955543 2457888999999999999874
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=4.5e-17 Score=136.53 Aligned_cols=158 Identities=18% Similarity=0.115 Sum_probs=115.9
Q ss_pred CCCCCccccccccCCCCccccccc---ceeEEEEEeeccccccc--CccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255 5 NTSELRYLQDVLFPYGQVSSNVLG---TYDYSMTMNSKGRMMTY--NKIPDILTGIILSNNRFDEAIPASISNLKGLQVL 79 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 79 (241)
.+.+++.|+.++++.|.++..... .....++++...+.... ..-+++|++|++++|++++..+..|..+++|++|
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred HhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 355667777777777777643221 11222333333322111 1236789999999999998777889999999999
Q ss_pred ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255 80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC 159 (241)
Q Consensus 80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc 159 (241)
++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++...+.......+..+.+.+||+.|
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 99999999777777888999999999999999555556778999999999999998433333556678889999999999
Q ss_pred CCC
Q 026255 160 GRP 162 (241)
Q Consensus 160 ~~~ 162 (241)
+|.
T Consensus 210 ~c~ 212 (290)
T 1p9a_G 210 NCE 212 (290)
T ss_dssp SGG
T ss_pred cCc
Confidence 864
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=5.7e-17 Score=134.22 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=115.9
Q ss_pred CCCCCccccccccCCCCcccccccc-----eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255 5 NTSELRYLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGL 76 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L 76 (241)
.+.+++.|+.++++.|.++...... ....+.++...+.... ..-+++|++|++++|.+++..+..|..+++|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 3566777778888888776543221 2233333333332222 2336788899999999988777778888999
Q ss_pred ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCC
Q 026255 77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDAN 155 (241)
Q Consensus 77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n 155 (241)
++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+.. ..+..+..+++.+|
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 99999999998666666888899999999999998666667888899999999999988554432 45677888899999
Q ss_pred CCCCCCC
Q 026255 156 SGLCGRP 162 (241)
Q Consensus 156 ~~lc~~~ 162 (241)
|+.|+|.
T Consensus 216 ~~~c~c~ 222 (270)
T 2o6q_A 216 PWDCTCN 222 (270)
T ss_dssp CBCCSSS
T ss_pred CeeCCCc
Confidence 9988875
No 13
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.5e-16 Score=125.29 Aligned_cols=115 Identities=23% Similarity=0.252 Sum_probs=99.7
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
-+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 36789999999999998777778999999999999999997666678999999999999999997666678889999999
Q ss_pred eccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255 128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~ 162 (241)
++++|.+++..+.. ..+..+..+++.+|++.|.++
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999999665543 557888999999999988765
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=1.4e-16 Score=123.66 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=102.0
Q ss_pred cCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255 45 YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124 (241)
Q Consensus 45 ~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 124 (241)
...+++++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 23 p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 23 PTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 34456789999999999998777788999999999999999997777778999999999999999997766778899999
Q ss_pred ceEeccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255 125 EFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 125 ~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~ 162 (241)
++|++++|.+++..+.. ..+..+..+++.+|++.|.++
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999999999655543 457888999999999988764
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.7e-16 Score=145.02 Aligned_cols=116 Identities=21% Similarity=0.293 Sum_probs=103.3
Q ss_pred ccCcCccEEEccCCCC-CccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255 47 KIPDILTGIILSNNRF-DEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE 125 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 125 (241)
..++.+++|++++|.+ .+..|..|..+++|+.|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 3477899999999975 445778899999999999999999988999999999999999999999988888899999999
Q ss_pred eEeccCCcccCCCCCCC-cc-CccCcccccCCCCCCCCC
Q 026255 126 FFNVSDNYLTGPIPQGK-QF-ATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 126 ~L~l~~N~l~g~~p~~~-~~-~~l~~~~~~~n~~lc~~~ 162 (241)
+|++++|++++..|... .+ .++..+++++||+.|+|.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999998888653 33 578889999999999885
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1.6e-16 Score=132.38 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=122.3
Q ss_pred CCCCCccccccccCCCC-cccccc---cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCC
Q 026255 5 NTSELRYLQDVLFPYGQ-VSSNVL---GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKG 75 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~-l~~~~~---~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~ 75 (241)
.+.+++.|+.++++.|. ++.... .. ....+.++...+.... ..-+++|++|++++|.+.+..+..+..+++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 46778888889999886 654322 11 2233333333332221 233678999999999999877777899999
Q ss_pred CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccC
Q 026255 76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDA 154 (241)
Q Consensus 76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~ 154 (241)
|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+. ...+..+..+++++
T Consensus 155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 99999999999966666789999999999999999988888899999999999999999965543 35567888899999
Q ss_pred CCCCCCCCC
Q 026255 155 NSGLCGRPL 163 (241)
Q Consensus 155 n~~lc~~~~ 163 (241)
|++.|+++.
T Consensus 235 N~~~c~~~~ 243 (285)
T 1ozn_A 235 NPWVCDCRA 243 (285)
T ss_dssp SCEECSGGG
T ss_pred CCccCCCCc
Confidence 999998754
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.66 E-value=2.9e-16 Score=138.67 Aligned_cols=114 Identities=24% Similarity=0.228 Sum_probs=101.6
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 67899999999999988888899999999999999999988888899999999999999999988888899999999999
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~ 162 (241)
+++|++++..+.. ..++.+..+++++|++.|.+|
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999655543 467888999999999999887
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.7e-15 Score=119.31 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=95.5
Q ss_pred ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255 47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 126 (241)
.-+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|++
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 34788999999999999988999999999999999999999888888999999999999999999988999999999999
Q ss_pred EeccCCcccCCCCCCCccCccCcccccCCCCCCCCCC
Q 026255 127 FNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPL 163 (241)
Q Consensus 127 L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~~ 163 (241)
|++++|++.+..+.......+....+.++...|+.|.
T Consensus 131 L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp EECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred EEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 9999999997655221111122223444555565443
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=8.6e-16 Score=129.05 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=114.4
Q ss_pred CCCCccccccccCCCCcccccc----cc--eeEEEEEeecccccccC---ccCcCccEEEccCCCCCc-cchhhhcCCCC
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTYN---KIPDILTGIILSNNRFDE-AIPASISNLKG 75 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~~n~i~~-~~p~~~~~l~~ 75 (241)
+.+++.|+.++++.|.++.... .. ....+.++...+..... .-+++|++|++++|.+.+ ..|..+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 4567778888888888765432 11 12223333222222221 235788899999998876 56778888899
Q ss_pred CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-Ccc-CccCccccc
Q 026255 76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQF-ATFDNTSFD 153 (241)
Q Consensus 76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~-~~l~~~~~~ 153 (241)
|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|.. ..+ ..+..++++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 999999999998777888888899999999999988666667888889999999999998777654 333 377888889
Q ss_pred CCCCCCCCC
Q 026255 154 ANSGLCGRP 162 (241)
Q Consensus 154 ~n~~lc~~~ 162 (241)
+|++.|+++
T Consensus 257 ~N~~~~~c~ 265 (306)
T 2z66_A 257 QNDFACTCE 265 (306)
T ss_dssp TCCEECSGG
T ss_pred CCCeecccC
Confidence 998888754
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=7e-16 Score=141.01 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=124.9
Q ss_pred CCCCCccccccccCCCCcccccc----cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCc-cchhhhcCCC
Q 026255 5 NTSELRYLQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDE-AIPASISNLK 74 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~-~~p~~~~~l~ 74 (241)
.+.++++|+.++++.|.++.... .. ....+.++...+.... ..-+++|++|++++|.+.+ .+|..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 45677888888888888765422 11 2223333333332222 2336889999999999987 4788899999
Q ss_pred CCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccC-ccCcccc
Q 026255 75 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFA-TFDNTSF 152 (241)
Q Consensus 75 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~-~l~~~~~ 152 (241)
+|+.|++++|.+++..|..++.+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|.. ..+. .+..+++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 9999999999999888999999999999999999999888999999999999999999999 55554 3444 4888999
Q ss_pred cCCCCCCCCCC
Q 026255 153 DANSGLCGRPL 163 (241)
Q Consensus 153 ~~n~~lc~~~~ 163 (241)
++|++.|+|+.
T Consensus 553 ~~N~~~c~c~~ 563 (606)
T 3vq2_A 553 TNNSVACICEH 563 (606)
T ss_dssp CSCCCCCSSTT
T ss_pred cCCCcccCCcc
Confidence 99999998874
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=2.4e-15 Score=128.08 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=57.3
Q ss_pred CcCccEEEccCCCCCccchhhhcC---------CCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHh
Q 026255 49 PDILTGIILSNNRFDEAIPASISN---------LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 119 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 119 (241)
+++|++|++++|++.+.+|..+.. +++|+.|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~ 226 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH 226 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc
Confidence 445555566555555555544432 555555555555555 55555555555555555555555 3444455
Q ss_pred hccccceEeccCCcccCCCCCC-CccCccCcccccCCCC
Q 026255 120 ELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSG 157 (241)
Q Consensus 120 ~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~ 157 (241)
.+++|++|++++|.+.+.+|.. ..+..+..+++.+|..
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 5555555555555555555543 3344455555555443
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=8.9e-16 Score=136.00 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=98.4
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|+|++|.+++. | .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|+
T Consensus 195 l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 67889999999999774 3 478889999999999999988899999999999999999999988888899999999999
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL 163 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 163 (241)
+++|++++..+.. ..+..+..+++++||+.|+|..
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999655543 4577888999999999998863
No 23
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=5.6e-16 Score=133.59 Aligned_cols=151 Identities=18% Similarity=0.090 Sum_probs=106.0
Q ss_pred ccccccCCCCcccccccc------eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255 12 LQDVLFPYGQVSSNVLGT------YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH 82 (241)
Q Consensus 12 L~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 82 (241)
++.++++.|+++...... ....+.++...+.... ..-+++|++|+|++|.|++..+..|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 556777777776533221 1223333333332221 2336789999999999988777788999999999999
Q ss_pred cCcCCCCCccccCCCCccceeeccCCcCCCCCchhH---hhccccceEeccCCcccCCCCCC-CccCc--cCcccccCCC
Q 026255 83 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL---VELTFLEFFNVSDNYLTGPIPQG-KQFAT--FDNTSFDANS 156 (241)
Q Consensus 83 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~l~~N~l~g~~p~~-~~~~~--l~~~~~~~n~ 156 (241)
+|.+++..|..|..+++|+.|+|++|++++..+..+ ..+++|+.|++++|++++..+.. ..+.. +..+++.+|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 999998788889999999999999999995433334 56889999999999998433221 12222 3568899999
Q ss_pred CCCCCC
Q 026255 157 GLCGRP 162 (241)
Q Consensus 157 ~lc~~~ 162 (241)
+.|+|.
T Consensus 201 ~~C~C~ 206 (361)
T 2xot_A 201 LECDCK 206 (361)
T ss_dssp EECCHH
T ss_pred ccCCcC
Confidence 999864
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=7.1e-15 Score=121.74 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=112.9
Q ss_pred CCCCccccccccCCCCccccc-ccce--eEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255 6 TSELRYLQDVLFPYGQVSSNV-LGTY--DYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL 81 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 81 (241)
...++.|+.++++.+.++... +... ...+.++...+.. ....-+++|++|++++|.+++..+..+..+++|++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 445677778888888876533 2222 2223333222211 11233678999999999998877777889999999999
Q ss_pred ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255 82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l 158 (241)
++|.+++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|.+++..+.. ..+..+..+++.+|...
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999777777889999999999999999766667788999999999999998666544 45678888888888643
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=121.20 Aligned_cols=128 Identities=14% Similarity=0.117 Sum_probs=100.2
Q ss_pred ccccccCCCCcccccc----cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255 12 LQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH 82 (241)
Q Consensus 12 L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 82 (241)
++.++++.|+++.... .. ....+.++...+.... ..-+++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4556677777665421 11 1222333333322211 2337889999999999999888889999999999999
Q ss_pred cCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCC
Q 026255 83 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139 (241)
Q Consensus 83 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p 139 (241)
+|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999998889999999999999999999998889999999999999999999986543
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=2.5e-15 Score=124.51 Aligned_cols=74 Identities=32% Similarity=0.401 Sum_probs=40.2
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCC-CccccCCCCccceeeccCCcCCCCCchhHhhcc
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH-IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 122 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 122 (241)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. +|..++.+++|++|++++|++++..+..+..++
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 44555555555555554444455555666666666665532 355555566666666666665544444444333
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=5.2e-16 Score=139.07 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=82.4
Q ss_pred CcCccEEEccCCCCCccchhhhc-CCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASIS-NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++. |. +..+++|+.|++++|.+++ +|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 56677777777777776666664 677777777777777744 32 3457888899999999985 44458889999999
Q ss_pred eccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR 161 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~ 161 (241)
++++|.+++..+....+..+..+++.+|++.|++
T Consensus 220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred EecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 9999999864444456678888999999998764
No 28
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=4.1e-15 Score=119.59 Aligned_cols=124 Identities=22% Similarity=0.257 Sum_probs=104.6
Q ss_pred EEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCC
Q 026255 35 TMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 114 (241)
Q Consensus 35 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 114 (241)
.+...++...+..++++++.|++++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|+++...
T Consensus 17 ~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 17 DCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp ECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred EcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 34444444444456789999999999999988888999999999999999999888999999999999999999999655
Q ss_pred chhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255 115 PQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 115 p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l 158 (241)
+..|..+++|++|++++|.+++..|.. ..+..+..+++++|...
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 566788999999999999999876654 45678888999998643
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=132.15 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=96.7
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|+|++|.++. +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus 184 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp CSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred ccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 6788888888888876 44 477888999999999999988888999999999999999999988888899999999999
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~ 162 (241)
+++|++++..+.. ..+..+..+++++||+.|+|.
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 9999999655543 457788899999999999884
No 30
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=5.6e-15 Score=119.51 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=104.5
Q ss_pred EEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCC
Q 026255 34 MTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR 113 (241)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 113 (241)
++|+..++......++++|++|+|++|.|++..|..|..+++|+.|+|++|.++...+..|..+++|+.|++++|++++.
T Consensus 24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 44444445555556788999999999999998899999999999999999999966667789999999999999999977
Q ss_pred CchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255 114 IPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 114 ~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l 158 (241)
.+..|..+++|++|++++|.++ .+|.. ..+..+..+++++|...
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 6777889999999999999999 56544 56778888999998643
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1e-14 Score=119.31 Aligned_cols=110 Identities=22% Similarity=0.211 Sum_probs=88.4
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 67888888988888887777788888888999999888877777788888889999999888866666677888888999
Q ss_pred ccCCcccCCCCC-CCccCccCcccccCCCCC
Q 026255 129 VSDNYLTGPIPQ-GKQFATFDNTSFDANSGL 158 (241)
Q Consensus 129 l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~l 158 (241)
+++|.+++..+. ...+..+..+++++|...
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 998888865553 345677888888888543
No 32
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=5.2e-15 Score=114.35 Aligned_cols=94 Identities=22% Similarity=0.264 Sum_probs=72.2
Q ss_pred CccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255 46 NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE 125 (241)
Q Consensus 46 ~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 125 (241)
..+++++++|+|++|.|++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+
T Consensus 26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 34567788888888888887777788888888888888888866666677888888888888888865555677788888
Q ss_pred eEeccCCcccCCCC
Q 026255 126 FFNVSDNYLTGPIP 139 (241)
Q Consensus 126 ~L~l~~N~l~g~~p 139 (241)
+|++++|+++...+
T Consensus 106 ~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 106 HIWLLNNPWDCACS 119 (170)
T ss_dssp EEECCSSCBCTTBG
T ss_pred EEEeCCCCCCCCch
Confidence 88888888875443
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=6.4e-15 Score=125.44 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=118.0
Q ss_pred CCCCccccccccCCCCcccccc--cc--eeEEEEEeeccccccc-Cc-----------cCcCccEEEccCCCCCccchhh
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL--GT--YDYSMTMNSKGRMMTY-NK-----------IPDILTGIILSNNRFDEAIPAS 69 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~--~~--~~~~~~~~~~~~~~~~-~~-----------~~~~L~~L~L~~n~i~~~~p~~ 69 (241)
+.++++|+.++++.|.++.... .. ....+.++........ .. -+++|++|++++|.++ .+|..
T Consensus 123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~ 201 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201 (328)
T ss_dssp GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh
Confidence 5677788888888888874321 11 2333444442222111 11 1778999999999998 57788
Q ss_pred hcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccC
Q 026255 70 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFD 148 (241)
Q Consensus 70 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~ 148 (241)
+..+++|+.|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.. ..+..+.
T Consensus 202 l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp GGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred hcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 999999999999999999 56677899999999999999999899998999999999999999988888865 5667888
Q ss_pred cccccCCCCCCCCC
Q 026255 149 NTSFDANSGLCGRP 162 (241)
Q Consensus 149 ~~~~~~n~~lc~~~ 162 (241)
.+++++|+.....|
T Consensus 281 ~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 281 KLDLRGCVNLSRLP 294 (328)
T ss_dssp EEECTTCTTCCCCC
T ss_pred EEeCCCCCchhhcc
Confidence 88898887665444
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=3.3e-15 Score=136.44 Aligned_cols=124 Identities=17% Similarity=0.088 Sum_probs=93.2
Q ss_pred EEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCC
Q 026255 34 MTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR 113 (241)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 113 (241)
++|+..++...+..+++++++|||++|+|+++.+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++.
T Consensus 36 ~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 45666666666667777888888888888877777788888888888888888866667788888888888888888865
Q ss_pred CchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccCCCC
Q 026255 114 IPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSG 157 (241)
Q Consensus 114 ~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~ 157 (241)
.+..|..+++|++|++++|++++..+. ...+..+..+++++|..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 556777888888888888888755443 24566677777777653
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=3.5e-15 Score=140.46 Aligned_cols=154 Identities=26% Similarity=0.293 Sum_probs=113.2
Q ss_pred CccccccccCCCCccccccc---c--eeEEEEEeecccccc---cCccCcCccEEEccCCCCCccchhhhcCCCCCceEe
Q 026255 9 LRYLQDVLFPYGQVSSNVLG---T--YDYSMTMNSKGRMMT---YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLN 80 (241)
Q Consensus 9 l~~L~~~~~~~~~l~~~~~~---~--~~~~~~~~~~~~~~~---~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 80 (241)
++.|+.++++.|.++..... . ....++++...+... ...-+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 56677778888777642211 1 122233322222211 112367888889999988888888888888899999
Q ss_pred cccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCCC
Q 026255 81 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLC 159 (241)
Q Consensus 81 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc 159 (241)
+++|.+++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..+..+..+++++|+..+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9999988888888888888999999999988888888888888999999999888888765 456777888888887765
Q ss_pred CCC
Q 026255 160 GRP 162 (241)
Q Consensus 160 ~~~ 162 (241)
..|
T Consensus 553 ~ip 555 (768)
T 3rgz_A 553 TIP 555 (768)
T ss_dssp BCC
T ss_pred cCC
Confidence 544
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=6.6e-15 Score=113.77 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=95.2
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
..+++++++|.++. +|..+ .++|+.|+|++|.+++..|..|..+++|++|++++|+|++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999987 56555 3889999999999998889999999999999999999997766778899999999999
Q ss_pred CCcccCCCCC-CCccCccCcccccCCCCCCCCC
Q 026255 131 DNYLTGPIPQ-GKQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 131 ~N~l~g~~p~-~~~~~~l~~~~~~~n~~lc~~~ 162 (241)
+|++++..+. ...+..+..+++.+|++.|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999976664 3567889999999999999875
No 37
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=1.6e-15 Score=128.37 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=76.8
Q ss_pred CcCccEEEccCCCCCccchhhh-cCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. |. ...+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence 4567777777777766555555 3567777777777777633 33 234778888888888888 445557788888888
Q ss_pred eccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR 161 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~ 161 (241)
++++|.+++..+....+..+..+++++|++.|++
T Consensus 220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp ECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred ECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 8888888843333345677888888888887653
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=1.3e-14 Score=123.14 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=91.5
Q ss_pred CCCccccccccCCCCcccccc-----c--ceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255 7 SELRYLQDVLFPYGQVSSNVL-----G--TYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL 79 (241)
Q Consensus 7 ~~l~~L~~~~~~~~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 79 (241)
.+++.|+.++++.|.+..... . .....+.++...+......++++|++|++++|.+++..|..+..+++|+.|
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 445555566666665542110 0 112223333333332223334677777777777777666777777777777
Q ss_pred ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC-------ccCccCcccc
Q 026255 80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK-------QFATFDNTSF 152 (241)
Q Consensus 80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~-------~~~~l~~~~~ 152 (241)
++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+... ....+..+++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 77777777666666777777777777777777 667667777777777777777774433221 1244555666
Q ss_pred cCCCCCC
Q 026255 153 DANSGLC 159 (241)
Q Consensus 153 ~~n~~lc 159 (241)
.+||..+
T Consensus 301 ~~N~~~~ 307 (330)
T 1xku_A 301 FSNPVQY 307 (330)
T ss_dssp CSSSSCG
T ss_pred ecCcccc
Confidence 7776544
No 39
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=5.6e-15 Score=116.61 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=90.4
Q ss_pred CCccccccccCCCCccccc-ccc--eeEEEEEeecccc-cccCccCcCccEEEccCCCCCccchhhhcCCCCCceEeccc
Q 026255 8 ELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRM-MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHN 83 (241)
Q Consensus 8 ~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~ 83 (241)
.++.|+.++++.|.++... +.. ....+.++..... .....-+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 4556666777777666322 111 1122222222111 11122356777777777777766666777777777777777
Q ss_pred CcCCCCCccccCCCCccceeeccCCc-CCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255 84 NNLQGHIPSCLGNLTNLESLDLSNNK-FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156 (241)
Q Consensus 84 N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~ 156 (241)
|.+++..|..++.+++|++|++++|+ ++ .+| .+..+++|+.|++++|.+++ ++....++.+..+++.+|+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 77776667777777777777777777 54 555 46777777777777777774 4444556667777777765
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=134.48 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=124.0
Q ss_pred CCCccccccccCCCCccccccc--c--eeEEEEEeeccccc----ccCccCcCccEEEccCCCCCccchhhhcCCCCCce
Q 026255 7 SELRYLQDVLFPYGQVSSNVLG--T--YDYSMTMNSKGRMM----TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQV 78 (241)
Q Consensus 7 ~~l~~L~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~~----~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 78 (241)
.++++|+.++++.|.++..... . ....+.+....+.. ....-+++|++|++++|.+.+..|..+..+++|+.
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 4667888888888887643211 1 11112222211111 11234688999999999999989999999999999
Q ss_pred EecccCcCC-CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCC
Q 026255 79 LNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANS 156 (241)
Q Consensus 79 L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~ 156 (241)
|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|.. ..++.+..+++.+|+
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999997 578999999999999999999999888999999999999999999999876654 567888999999999
Q ss_pred CCCCCCC
Q 026255 157 GLCGRPL 163 (241)
Q Consensus 157 ~lc~~~~ 163 (241)
+.|.++.
T Consensus 530 ~~~~~~~ 536 (570)
T 2z63_A 530 WDCSCPR 536 (570)
T ss_dssp BCCCTTT
T ss_pred ccCCCcc
Confidence 9998764
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=1.6e-14 Score=120.17 Aligned_cols=108 Identities=21% Similarity=0.260 Sum_probs=62.5
Q ss_pred CcCccEEEccCCC-CCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNR-FDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 4556666666665 555445556666666666666666665555556666666666666666664444445556666666
Q ss_pred eccCCcccCCCCC-CCccCccCcccccCCC
Q 026255 128 NVSDNYLTGPIPQ-GKQFATFDNTSFDANS 156 (241)
Q Consensus 128 ~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~ 156 (241)
++++|.+++..+. ...+..+..+++++|.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 6666666543332 2334555555555553
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=6.9e-15 Score=136.22 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=114.6
Q ss_pred CCCCccccccccCCCCccccc-----cc--ceeEEEEEeeccccccc---CccCcCccEEEccCCCCCccch--------
Q 026255 6 TSELRYLQDVLFPYGQVSSNV-----LG--TYDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIP-------- 67 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~-----~~--~~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p-------- 67 (241)
+.+++.|+.+++..|.++... .. .....++++...+.... ..-+++|++|++++|.+++..+
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 455667777777777664211 01 12233333333332222 2336789999999999976422
Q ss_pred hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC--ccC
Q 026255 68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK--QFA 145 (241)
Q Consensus 68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~--~~~ 145 (241)
..+..+++|+.|++++|.++...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..|... .+.
T Consensus 530 ~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT
T ss_pred hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc
Confidence 237888999999999999994444568999999999999999996666667889999999999999997665432 467
Q ss_pred ccCcccccCCCCCCCCCC
Q 026255 146 TFDNTSFDANSGLCGRPL 163 (241)
Q Consensus 146 ~l~~~~~~~n~~lc~~~~ 163 (241)
.+..+++++||+.|+|+.
T Consensus 610 ~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 610 NLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCSEEECTTCCCCBCCCC
T ss_pred ccCEEEccCCCcccCCcc
Confidence 888999999999999864
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.9e-14 Score=113.21 Aligned_cols=125 Identities=22% Similarity=0.209 Sum_probs=103.7
Q ss_pred EEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCC
Q 026255 34 MTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR 113 (241)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 113 (241)
+.+...++......+++++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus 12 v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence 33444444444556678999999999999987777889999999999999999976667789999999999999999966
Q ss_pred CchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255 114 IPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 114 ~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l 158 (241)
.+..+..+++|++|++++|.+++..+.. ..+..+..+++.+|...
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 6666889999999999999999666543 56788889999988643
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=3e-15 Score=126.55 Aligned_cols=150 Identities=20% Similarity=0.229 Sum_probs=80.9
Q ss_pred CCCCccccccccCCCCccccccc---c--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCC-CC
Q 026255 6 TSELRYLQDVLFPYGQVSSNVLG---T--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLK-GL 76 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~~---~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~-~L 76 (241)
+.+++.|+.++++.|.++..... . ....++++...+.... ..-+++|++|++++|.+++.+|..+..++ +|
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 45666677777777766522111 1 1122222222221111 12245666666666666655666666665 66
Q ss_pred ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255 77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156 (241)
Q Consensus 77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~ 156 (241)
+.|++++|.+++.+|..+..+. |+.|++++|++++..|..+..+++|+.|++++|.+++.+|....+..+..+++++|.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 6666666666666666655554 666666666665555555555666666666666665555544444555555555554
No 45
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=1.4e-14 Score=112.33 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=78.4
Q ss_pred EEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCC
Q 026255 35 TMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 114 (241)
Q Consensus 35 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 114 (241)
+++..++...+..++++|++|+|++|.|++..|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..
T Consensus 18 ~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 18 NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence 34444443344455678888888888888877888888888888888888888655556788888888888888888555
Q ss_pred chhHhhccccceEeccCCcccCC
Q 026255 115 PQQLVELTFLEFFNVSDNYLTGP 137 (241)
Q Consensus 115 p~~l~~l~~L~~L~l~~N~l~g~ 137 (241)
+..|..+++|++|++++|++...
T Consensus 98 ~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TTTTTTCTTCSEEECCSSCBCTT
T ss_pred HHHhccccCCCEEEeCCCCcccc
Confidence 55578888888888888888744
No 46
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=1.7e-14 Score=111.91 Aligned_cols=108 Identities=24% Similarity=0.258 Sum_probs=93.4
Q ss_pred ccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccC
Q 026255 52 LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSD 131 (241)
Q Consensus 52 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 131 (241)
-+.+++++|.+.. +|..+. ++|+.|+|++|.+++..|..|+.+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4689999999966 666554 8999999999999988899999999999999999999966556678999999999999
Q ss_pred CcccCCCCC-CCccCccCcccccCCCCCCCCC
Q 026255 132 NYLTGPIPQ-GKQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 132 N~l~g~~p~-~~~~~~l~~~~~~~n~~lc~~~ 162 (241)
|++++..+. ...+..+..+++.+|++.|.++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999966554 3567889999999999998764
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=4.9e-15 Score=135.42 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=124.1
Q ss_pred CCCCCccccccccCCCCcccccc----cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCcc---chhhhcC
Q 026255 5 NTSELRYLQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEA---IPASISN 72 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~---~p~~~~~ 72 (241)
.+.+++.|+.++++.|+++.... .. ....+.++...+.... ..-+++|++|++++|.+.+. .+..+..
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 45678888889999998875432 11 2333444333333222 23378999999999999762 2356889
Q ss_pred CCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCccc
Q 026255 73 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTS 151 (241)
Q Consensus 73 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~ 151 (241)
+++|+.|++++|.+++..|..|+.+++|+.|++++|++++..|..+..++.| +|++++|++++..|.. ..+..+..++
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 9999999999999998889999999999999999999999999999999999 9999999999777654 4567888999
Q ss_pred ccCCCCCCCCC
Q 026255 152 FDANSGLCGRP 162 (241)
Q Consensus 152 ~~~n~~lc~~~ 162 (241)
+++||+.|+|+
T Consensus 554 l~~N~~~c~c~ 564 (606)
T 3t6q_A 554 LRQNPLDCTCS 564 (606)
T ss_dssp CTTCCEECSGG
T ss_pred CCCCCccccCC
Confidence 99999999875
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=1.2e-14 Score=123.60 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=100.7
Q ss_pred CCCCccccccccCCCCccccc--ccce----eEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255 6 TSELRYLQDVLFPYGQVSSNV--LGTY----DYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL 79 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 79 (241)
+.+++.|+.++++.|.++... ...+ ...+.++...+......++++|++|++++|.+++..+..+..+++|+.|
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 455666666666666664211 1111 1111122222222222334678888888888888777778888888888
Q ss_pred ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC-------ccCccCcccc
Q 026255 80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK-------QFATFDNTSF 152 (241)
Q Consensus 80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~-------~~~~l~~~~~ 152 (241)
++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+... ....+..+++
T Consensus 223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 88888888777777888888888888888888 778778888888888888888875443321 1344566777
Q ss_pred cCCCCCC
Q 026255 153 DANSGLC 159 (241)
Q Consensus 153 ~~n~~lc 159 (241)
.+|+..+
T Consensus 302 ~~N~~~~ 308 (332)
T 2ft3_A 302 FNNPVPY 308 (332)
T ss_dssp CSSSSCG
T ss_pred ecCcccc
Confidence 8887653
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=1.9e-14 Score=124.82 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=92.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 567888888888888877888888999999999999988 56777778899999999999998 6787788899999999
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR 161 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~ 161 (241)
+++|.++.. | ...+..+..+++++|++.|.+
T Consensus 325 L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 325 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 999999854 3 355678889999999998864
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=6.5e-14 Score=115.76 Aligned_cols=108 Identities=20% Similarity=0.255 Sum_probs=61.2
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|++++..+..+..+++|+.|+
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence 45566666666666555555555666666666666666655555555666666666666666644334455566666666
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDANS 156 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~ 156 (241)
+++|.+++..+.. ..+..+..+++++|.
T Consensus 164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 6666665433321 334555555555553
No 51
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.5e-14 Score=124.61 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=97.9
Q ss_pred ccccCCCCcccccc--cceeEEEEEeecccccccC---c-cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCC
Q 026255 14 DVLFPYGQVSSNVL--GTYDYSMTMNSKGRMMTYN---K-IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ 87 (241)
Q Consensus 14 ~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~---~-~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~ 87 (241)
.++.+.+.++.... ......++++...+..... . -+++|+.|+|++|.|++..+..|..+++|+.|+|++|.++
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 34555555554321 2223334444444332222 1 4677888888888888877777888888888888888888
Q ss_pred CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC----CccCccCcccccCCCC
Q 026255 88 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG----KQFATFDNTSFDANSG 157 (241)
Q Consensus 88 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~----~~~~~l~~~~~~~n~~ 157 (241)
...+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..+.. ..+..+..+++++|..
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 666667888888888888888888777778888888888888888888533222 2466777777777754
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=129.34 Aligned_cols=112 Identities=22% Similarity=0.264 Sum_probs=99.4
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|+++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 78999999999988766789999999999999999998888889999999999999999998888999999999999999
Q ss_pred CCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255 131 DNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 131 ~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~ 162 (241)
+|.+++..+.. ..+..+..+++++|++.|+|+
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99999655433 456788899999999999864
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=5.2e-14 Score=117.81 Aligned_cols=107 Identities=25% Similarity=0.276 Sum_probs=57.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.++. +|..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|+
T Consensus 76 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 3445555555555543 444455555566666666666544445555556666666666666544444455555666666
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDANS 156 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~ 156 (241)
+++|++++..+.. ..+..+..+++++|.
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 6666655322222 234555555555554
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=127.40 Aligned_cols=152 Identities=24% Similarity=0.311 Sum_probs=110.5
Q ss_pred CCCccccccccCCCCcccccc---cc--eeEEEEEeeccccc--c---cCccCcCccEEEccCCCCCccchh-hhcCCCC
Q 026255 7 SELRYLQDVLFPYGQVSSNVL---GT--YDYSMTMNSKGRMM--T---YNKIPDILTGIILSNNRFDEAIPA-SISNLKG 75 (241)
Q Consensus 7 ~~l~~L~~~~~~~~~l~~~~~---~~--~~~~~~~~~~~~~~--~---~~~~~~~L~~L~L~~n~i~~~~p~-~~~~l~~ 75 (241)
..+++|+.++++.|+++.... .. ....+.++...+.. . ...-+++|++|++++|.+.+.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 577788888888888876222 11 12233333333321 1 112367888888888888774444 4777888
Q ss_pred CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC--CCccCccCccccc
Q 026255 76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFD 153 (241)
Q Consensus 76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~ 153 (241)
|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|. ...+..+..++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 88888888888877776654 78999999999998 78887889999999999999998 4554 3456788889999
Q ss_pred CCCCCCCCC
Q 026255 154 ANSGLCGRP 162 (241)
Q Consensus 154 ~n~~lc~~~ 162 (241)
+|++.|.|+
T Consensus 477 ~N~~~c~c~ 485 (520)
T 2z7x_B 477 TNPWDCSCP 485 (520)
T ss_dssp SSCBCCCHH
T ss_pred CCCCcccCC
Confidence 999999764
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=7.4e-14 Score=128.90 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=75.3
Q ss_pred CccEEEccCCCCCccchhhhc--CCCCCceEecccCcCCCCCccccCCCCccceeec------cCCcCCCCCchhHhhcc
Q 026255 51 ILTGIILSNNRFDEAIPASIS--NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL------SNNKFSGRIPQQLVELT 122 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~ 122 (241)
+|++|+|++|.++. +|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|..+..++
T Consensus 489 ~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp GCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 67777777777764 556665 77777777777777775 6777777777777777 45666777777777777
Q ss_pred ccceEeccCCcccCCCCCCCccCccCcccccCCCCCCC
Q 026255 123 FLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCG 160 (241)
Q Consensus 123 ~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~ 160 (241)
+|+.|++++|.+ +.+|.... +.+..+++++|+..|-
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEE
T ss_pred CCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCccc
Confidence 777777777777 46665533 6677777777776653
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.53 E-value=3.4e-14 Score=129.02 Aligned_cols=152 Identities=23% Similarity=0.315 Sum_probs=112.3
Q ss_pred CCCccccccccCCCCcccccc---cc--eeEEEEEeeccccc-----ccCccCcCccEEEccCCCCCc-cchhhhcCCCC
Q 026255 7 SELRYLQDVLFPYGQVSSNVL---GT--YDYSMTMNSKGRMM-----TYNKIPDILTGIILSNNRFDE-AIPASISNLKG 75 (241)
Q Consensus 7 ~~l~~L~~~~~~~~~l~~~~~---~~--~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L~~n~i~~-~~p~~~~~l~~ 75 (241)
.+++.|+.++++.|+++.... .. ....+.++...+.. ....-+++|++|++++|.+.+ ..+..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 677888888888888876222 11 22233333333321 012336788889999998887 34445778888
Q ss_pred CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC--CCccCccCccccc
Q 026255 76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFD 153 (241)
Q Consensus 76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~ 153 (241)
|+.|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|. ...+..+..++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999988877776554 68999999999998 78887779999999999999999 4554 3567788899999
Q ss_pred CCCCCCCCC
Q 026255 154 ANSGLCGRP 162 (241)
Q Consensus 154 ~n~~lc~~~ 162 (241)
+|++.|+|+
T Consensus 506 ~N~~~c~c~ 514 (562)
T 3a79_B 506 DNPWDCTCP 514 (562)
T ss_dssp SCCBCCCHH
T ss_pred CCCcCCCcc
Confidence 999999875
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=3.4e-14 Score=130.17 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=94.2
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 678889999999998888888999999999999999998 46777788999999999999998 7888889999999999
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR 161 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~ 161 (241)
+++|.+++. | ...+..+..+++++|++.|.+
T Consensus 331 L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 331 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence 999999855 3 345678888999999988854
No 58
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=4.8e-14 Score=109.19 Aligned_cols=92 Identities=26% Similarity=0.274 Sum_probs=82.3
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
-+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 36789999999999998777778999999999999999997777778999999999999999996655567889999999
Q ss_pred eccCCcccCCCC
Q 026255 128 NVSDNYLTGPIP 139 (241)
Q Consensus 128 ~l~~N~l~g~~p 139 (241)
++++|++.+..|
T Consensus 130 ~l~~N~~~~~~~ 141 (177)
T 2o6r_A 130 WLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCeeccCc
Confidence 999999997665
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=3.1e-14 Score=125.60 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=95.7
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 129 (241)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 57888999999998888888999999999999999999888889999999999999999999777888999999999999
Q ss_pred cCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255 130 SDNYLTGPIPQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 130 ~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l 158 (241)
++|.+++..|.. ..+..+..+++++|...
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcccccChhhccccccccEEECCCCccc
Confidence 999998776654 56778888899888653
No 60
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=7.6e-14 Score=109.99 Aligned_cols=88 Identities=31% Similarity=0.274 Sum_probs=81.6
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 67899999999999998888999999999999999999988888899999999999999999965556788999999999
Q ss_pred ccCCcccC
Q 026255 129 VSDNYLTG 136 (241)
Q Consensus 129 l~~N~l~g 136 (241)
+++|++..
T Consensus 133 L~~N~~~C 140 (193)
T 2wfh_A 133 IGANPLYC 140 (193)
T ss_dssp CCSSCEEC
T ss_pred eCCCCeec
Confidence 99999975
No 61
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=4e-14 Score=108.65 Aligned_cols=105 Identities=22% Similarity=0.187 Sum_probs=66.2
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc--hhHhhccccce
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP--QQLVELTFLEF 126 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~ 126 (241)
+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++ +| ..+..+++|++
T Consensus 48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence 45677777777777654 556667777777777777765566666666777777777777763 33 45666677777
Q ss_pred EeccCCcccCCCC----CCCccCccCcccccCCC
Q 026255 127 FNVSDNYLTGPIP----QGKQFATFDNTSFDANS 156 (241)
Q Consensus 127 L~l~~N~l~g~~p----~~~~~~~l~~~~~~~n~ 156 (241)
|++++|.+++..+ ....++.+..+++.+|.
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 7777777764433 12345555555655554
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.50 E-value=4e-14 Score=118.80 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=112.0
Q ss_pred CCccccccccCCCCcccccc--cc--eeEEEEEeeccc---cc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255 8 ELRYLQDVLFPYGQVSSNVL--GT--YDYSMTMNSKGR---MM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL 79 (241)
Q Consensus 8 ~l~~L~~~~~~~~~l~~~~~--~~--~~~~~~~~~~~~---~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 79 (241)
.+++|+.++++.|.++.... .. ....+.++...+ .. ....-+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 56788899999998874221 00 111222222111 11 122336789999999999988888888899999999
Q ss_pred ecccCcCCC-CCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccCCCC
Q 026255 80 NLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSG 157 (241)
Q Consensus 80 ~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~ 157 (241)
++++|.+++ ..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+. ...+..+..+++++|..
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999999886 5788889999999999999999977788888899999999999999865442 24567788888888865
Q ss_pred CC
Q 026255 158 LC 159 (241)
Q Consensus 158 lc 159 (241)
..
T Consensus 236 ~~ 237 (306)
T 2z66_A 236 MT 237 (306)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 63
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.50 E-value=5.1e-14 Score=120.27 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=48.4
Q ss_pred cCccEEEccC-CCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 50 DILTGIILSN-NRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 50 ~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
++|++|+|++ |.|.+..+..|..+++|+.|+|++|.|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3466666664 666555555566666666666666666655555556666666666666666533333333333 66666
Q ss_pred ccCCccc
Q 026255 129 VSDNYLT 135 (241)
Q Consensus 129 l~~N~l~ 135 (241)
+.+|.+.
T Consensus 110 l~~N~~~ 116 (347)
T 2ifg_A 110 LSGNPLH 116 (347)
T ss_dssp CCSSCCC
T ss_pred eeCCCcc
Confidence 6666555
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.49 E-value=4.1e-14 Score=127.70 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=96.2
Q ss_pred CCccccccccCCCCccccc------ccc--eeEEEEEeeccccc-----ccCccCcCccEEEccCCCCCccchhhhcCCC
Q 026255 8 ELRYLQDVLFPYGQVSSNV------LGT--YDYSMTMNSKGRMM-----TYNKIPDILTGIILSNNRFDEAIPASISNLK 74 (241)
Q Consensus 8 ~l~~L~~~~~~~~~l~~~~------~~~--~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~ 74 (241)
++++|+.++++.|+++... ... ....+.++...+.. ....-+++|++|++++|++++ +|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccc
Confidence 4666777777777765421 111 12223332222211 112335677777777777764 566666677
Q ss_pred CCceEecccCcCCCCCcccc------------------CCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC
Q 026255 75 GLQVLNLHNNNLQGHIPSCL------------------GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG 136 (241)
Q Consensus 75 ~L~~L~Ls~N~l~~~~p~~~------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 136 (241)
+|++|++++|.++ .+|..+ ..+++|++|++++|+++ .+|. ...+++|++|++++|++++
T Consensus 411 ~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 411 KMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred cccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 7777777777765 333221 25777888888888887 6666 4567888888888888887
Q ss_pred CCCCC-CccCccCcccccCCCCCCCCC
Q 026255 137 PIPQG-KQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 137 ~~p~~-~~~~~l~~~~~~~n~~lc~~~ 162 (241)
.+|.. ..+..+..+++++|++.|+++
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 66653 566778888888888888765
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.9e-14 Score=110.45 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=95.2
Q ss_pred CCCCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCc
Q 026255 6 TSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNN 85 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~ 85 (241)
..++..|+.++++.|+++... .+....++|+.|++++|.+++. ..+..+++|++|++++|.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~-----------------~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE-----------------NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC-----------------CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSC
T ss_pred cCCcCCceEEEeeCCCCchhH-----------------HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCc
Confidence 445667777788888776211 1223345799999999999875 568888999999999999
Q ss_pred CCCCCccccCCCCccceeeccCCcCCCCCch--hHhhccccceEeccCCcccCCCCC-----CCccCccCcccccCCC
Q 026255 86 LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ--QLVELTFLEFFNVSDNYLTGPIPQ-----GKQFATFDNTSFDANS 156 (241)
Q Consensus 86 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~l~~N~l~g~~p~-----~~~~~~l~~~~~~~n~ 156 (241)
+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|+++ .+|. ...++.+..+++.+|.
T Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 76 ICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 98554455588899999999999996 5665 7788889999999999987 4443 2345566666666553
No 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=6.2e-14 Score=105.46 Aligned_cols=106 Identities=21% Similarity=0.281 Sum_probs=67.0
Q ss_pred CcCccEEEccCCCCC-ccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456677777777765 45666666667777777777776643 556666777777777777765566666666777777
Q ss_pred eccCCcccCCC--CCCCccCccCcccccCCC
Q 026255 128 NVSDNYLTGPI--PQGKQFATFDNTSFDANS 156 (241)
Q Consensus 128 ~l~~N~l~g~~--p~~~~~~~l~~~~~~~n~ 156 (241)
++++|.+++.. +....++.+..+++.+|+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 77777666421 222444556666666664
No 67
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=8.5e-14 Score=106.82 Aligned_cols=110 Identities=23% Similarity=0.269 Sum_probs=95.2
Q ss_pred ccCcCccEEEccCCCCC-ccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255 47 KIPDILTGIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE 125 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 125 (241)
..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 44688999999999997 56888889999999999999999955 7789999999999999999977888888899999
Q ss_pred eEeccCCcccCCC--CCCCccCccCcccccCCCCC
Q 026255 126 FFNVSDNYLTGPI--PQGKQFATFDNTSFDANSGL 158 (241)
Q Consensus 126 ~L~l~~N~l~g~~--p~~~~~~~l~~~~~~~n~~l 158 (241)
+|++++|.+++.. +....+..+..+++.+|+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 9999999998643 33456778888999998643
No 68
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.47 E-value=1.5e-14 Score=133.50 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=100.3
Q ss_pred CCCCccccccccCCCCcccc------------------cc--c--c--eeEEEEEeecccccccC---ccCcCccEEEcc
Q 026255 6 TSELRYLQDVLFPYGQVSSN------------------VL--G--T--YDYSMTMNSKGRMMTYN---KIPDILTGIILS 58 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~------------------~~--~--~--~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~ 58 (241)
+.++++|+.++++.|.++.. .. . . ....+.++...+....+ .-+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 56788888888988888762 11 1 1 12233333333222222 225677777777
Q ss_pred CCC-CCc-cchhhhcCC------CCCceEecccCcCCCCCcc--ccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 59 NNR-FDE-AIPASISNL------KGLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 59 ~n~-i~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+|. +++ .+|..++.+ ++|+.|++++|.++ .+|. .++.+++|+.|++++|+++|.+| .+..+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 777 776 677777665 77777777777777 7777 77777788888888888777777 677777788888
Q ss_pred ccCCcccCCCCCC-CccCc-cCcccccCCCCC
Q 026255 129 VSDNYLTGPIPQG-KQFAT-FDNTSFDANSGL 158 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~-l~~~~~~~n~~l 158 (241)
+++|.++ .+|.. ..+.. +..+++++|...
T Consensus 360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred CCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 8888777 55543 44556 777788777644
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.47 E-value=2.3e-13 Score=120.10 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=45.9
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccC-cCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
++|++|+|++|.+.+..+..|..+++|+.|++++| .+....+..|..+++|++|++++|+++ .+|. +..+++|+.|+
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~ 213 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELD 213 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEE
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEE
Confidence 34444444444444433334444444444444442 222122223444555555555555554 3332 44445555555
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDAN 155 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n 155 (241)
+++|.+++..|.. ..+..+..+++.+|
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCccCccChhhhccCccCCEEECCCC
Confidence 5555555433322 23344444444444
No 70
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=121.94 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=105.1
Q ss_pred CCCCCccccccccCCCCcccccccc-----eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255 5 NTSELRYLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGL 76 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L 76 (241)
.+.+++.|+.++++.|.++...... ....++++...+.... ..-+++|++|+|++|.+.+..+..|..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 4567777788888888776542211 2233333333332222 2336788888888888888778888888888
Q ss_pred ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCC
Q 026255 77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDAN 155 (241)
Q Consensus 77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n 155 (241)
+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+.. ..+..+..+++.+|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 88888888888777888888888889999888888666667888888888888888887654422 33444555555554
Q ss_pred C
Q 026255 156 S 156 (241)
Q Consensus 156 ~ 156 (241)
+
T Consensus 211 ~ 211 (477)
T 2id5_A 211 P 211 (477)
T ss_dssp T
T ss_pred c
Confidence 3
No 71
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=9.8e-14 Score=104.36 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=91.9
Q ss_pred CccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCC
Q 026255 9 LRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG 88 (241)
Q Consensus 9 l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~ 88 (241)
.+.|+.++++.|.++...+ +..+ .-+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~--------------~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~ 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL--------------EGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC--------------CSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS
T ss_pred CccCeEEEccCCcCChhHH--------------HHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc
Confidence 4667777888877762111 1111 2367899999999999886 778999999999999999997
Q ss_pred CCccccCCCCccceeeccCCcCCCC-CchhHhhccccceEeccCCcccCCCC
Q 026255 89 HIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLEFFNVSDNYLTGPIP 139 (241)
Q Consensus 89 ~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g~~p 139 (241)
.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+++..+
T Consensus 79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 7888888899999999999999853 34778999999999999999986544
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=1.3e-13 Score=116.28 Aligned_cols=149 Identities=17% Similarity=0.102 Sum_probs=95.1
Q ss_pred CCCccccccccCCCCcccccc--c-------ceeEEEEEeeccccccc---CccCcCccEEEccCCCCCcc--chhhh--
Q 026255 7 SELRYLQDVLFPYGQVSSNVL--G-------TYDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEA--IPASI-- 70 (241)
Q Consensus 7 ~~l~~L~~~~~~~~~l~~~~~--~-------~~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~--~p~~~-- 70 (241)
.+++.|+.++++.|+++.... . .....+.++...+.... ..-+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 677888888888888875410 0 22334444444333222 22367788888888887664 23344
Q ss_pred cCCCCCceEecccCcCCC--CCc-cccCCCCccceeeccCCcCCCCCc-hhHhhccccceEeccCCcccCCCCCCCccCc
Q 026255 71 SNLKGLQVLNLHNNNLQG--HIP-SCLGNLTNLESLDLSNNKFSGRIP-QQLVELTFLEFFNVSDNYLTGPIPQGKQFAT 146 (241)
Q Consensus 71 ~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~ 146 (241)
..+++|++|++++|.+++ .++ ..+..+++|+.|++++|++++..| ..+..+++|++|++++|.++ .+|.... ..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CC
Confidence 677888888888888772 111 334566788888888888876554 34455677888888888877 6665443 66
Q ss_pred cCcccccCCCC
Q 026255 147 FDNTSFDANSG 157 (241)
Q Consensus 147 l~~~~~~~n~~ 157 (241)
+..+++++|..
T Consensus 276 L~~L~Ls~N~l 286 (312)
T 1wwl_A 276 LSVLDLSYNRL 286 (312)
T ss_dssp EEEEECCSSCC
T ss_pred ceEEECCCCCC
Confidence 77777777754
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.46 E-value=3e-13 Score=119.72 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=47.6
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCC-cCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN-KFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 127 (241)
+++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++| .+....+..|..+++|++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 345555555555555544444555555555555555555333334444444444444442 2221111234444444444
Q ss_pred eccCCcccCCCCCCCccCccCcccccCC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDAN 155 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n 155 (241)
++++|.++ .+|....+..+..+++++|
T Consensus 202 ~L~~n~l~-~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 202 NLGMCNIK-DMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp ECTTSCCS-SCCCCTTCTTCCEEECTTS
T ss_pred ECCCCccc-ccccccccccccEEECcCC
Confidence 44444444 2233333333444444433
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.45 E-value=9.9e-13 Score=111.64 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=78.3
Q ss_pred CCCCccccccccCCCCccccccc-----ceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEe
Q 026255 6 TSELRYLQDVLFPYGQVSSNVLG-----TYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLN 80 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 80 (241)
+.+++.|+.++++.|+++..... .....++++...+......+.++|++|++++|.+.+..+..|..+++|+.|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 45556666666666666543111 1122333333333322223334555555555555554444455555555555
Q ss_pred cccCcC----------------------------------------------CCCCccccCCCCccceeeccCCcCCCCC
Q 026255 81 LHNNNL----------------------------------------------QGHIPSCLGNLTNLESLDLSNNKFSGRI 114 (241)
Q Consensus 81 Ls~N~l----------------------------------------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 114 (241)
+++|.+ ++..+..+..+++|+.|++++|++++..
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 554444 3333344555666666666666666555
Q ss_pred chhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCC
Q 026255 115 PQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSG 157 (241)
Q Consensus 115 p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~ 157 (241)
+..+..+++|+.|++++|.++ .+|.. ..+..+..+++++|..
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 555666666666666666666 44432 3445566666666654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=2.5e-13 Score=112.32 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=91.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 67899999999999887777888999999999999999977778889999999999999999866665788889999999
Q ss_pred ccCCcccCC-CCCC-CccCccCcccccCCCC
Q 026255 129 VSDNYLTGP-IPQG-KQFATFDNTSFDANSG 157 (241)
Q Consensus 129 l~~N~l~g~-~p~~-~~~~~l~~~~~~~n~~ 157 (241)
+++|.+++. +|.. ..+..+..+++++|..
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 999998863 4543 4567788888888854
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=9.4e-14 Score=109.53 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=93.8
Q ss_pred ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255 47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 126 (241)
..+++|++|++++|.+.. ++.+..+++|++|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++
T Consensus 63 ~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred hcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 347899999999998764 347889999999999999999878888999999999999999999878889999999999
Q ss_pred EeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 127 FNVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 127 L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
|++++|.+.+.+|....++.+..+++++|..
T Consensus 141 L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EECCSCTBCCCCGGGGGCSSCCEEECTTBCC
T ss_pred EEccCCCCccccHhhcCCCCCCEEECCCCCC
Confidence 9999998434666666677888888888753
No 77
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.45 E-value=2.3e-13 Score=124.25 Aligned_cols=107 Identities=19% Similarity=0.106 Sum_probs=59.4
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|+|++|.+.+..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|++++..|..+..+++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 44566666666666555555555666666666666666555555555566666666666665544344455555666666
Q ss_pred ccCCcccC-CCCCCCccCccCcccccCC
Q 026255 129 VSDNYLTG-PIPQGKQFATFDNTSFDAN 155 (241)
Q Consensus 129 l~~N~l~g-~~p~~~~~~~l~~~~~~~n 155 (241)
+++|.+++ .+|....+..+..+++++|
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred CCCCcccccCcccccCCcccCEEEcccC
Confidence 66665554 2233333444555555444
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=116.49 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=105.6
Q ss_pred CCccccccccCCCCccccccc-------ceeEEEEEeecccccc---cCcc----CcCccEEEccCCCCCccchhhhcCC
Q 026255 8 ELRYLQDVLFPYGQVSSNVLG-------TYDYSMTMNSKGRMMT---YNKI----PDILTGIILSNNRFDEAIPASISNL 73 (241)
Q Consensus 8 ~l~~L~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~---~~~~----~~~L~~L~L~~n~i~~~~p~~~~~l 73 (241)
+++.|+.++++.|+++..... .....++++...+... +..+ +++|++|++++|.+.+..|..|..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 567788888888888742211 1233344444443322 1121 3789999999999988887889999
Q ss_pred CCCceEecccCcCCCC--Ccccc--CCCCccceeeccCCcCCCC--Cc-hhHhhccccceEeccCCcccCCCCC--CCcc
Q 026255 74 KGLQVLNLHNNNLQGH--IPSCL--GNLTNLESLDLSNNKFSGR--IP-QQLVELTFLEFFNVSDNYLTGPIPQ--GKQF 144 (241)
Q Consensus 74 ~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p-~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~ 144 (241)
++|++|++++|.+.+. .|..+ +.+++|++|++++|++++. ++ ..+..+++|++|++++|.+++..|. ...+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999998765 33444 7889999999999998831 12 2334678999999999999886642 3446
Q ss_pred CccCcccccCCCCC
Q 026255 145 ATFDNTSFDANSGL 158 (241)
Q Consensus 145 ~~l~~~~~~~n~~l 158 (241)
..+..+++++|...
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 78888888888654
No 79
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.44 E-value=2.6e-13 Score=123.95 Aligned_cols=109 Identities=21% Similarity=0.232 Sum_probs=75.5
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|++++..+..+..+++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 56677777777777776666777777777777777777766677777777777777777777755556677777777777
Q ss_pred ccCCcccC-CCCCC-CccCccCcccccCCCC
Q 026255 129 VSDNYLTG-PIPQG-KQFATFDNTSFDANSG 157 (241)
Q Consensus 129 l~~N~l~g-~~p~~-~~~~~l~~~~~~~n~~ 157 (241)
+++|.+++ .+|.. ..+..+..+++++|..
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 77777764 34542 4456666677776643
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=2.6e-13 Score=124.23 Aligned_cols=90 Identities=23% Similarity=0.240 Sum_probs=68.7
Q ss_pred cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
.+++|+.|+|++|.+++.+|..|+.+++|++|+|++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|++|
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 36678888888888877777777788888888888888875555556778888888888888877777777778888888
Q ss_pred eccCCcccCC
Q 026255 128 NVSDNYLTGP 137 (241)
Q Consensus 128 ~l~~N~l~g~ 137 (241)
++++|.+++.
T Consensus 177 ~L~~N~l~~~ 186 (597)
T 3oja_B 177 QLSSNRLTHV 186 (597)
T ss_dssp ECTTSCCSBC
T ss_pred ECcCCCCCCc
Confidence 8888877753
No 81
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.43 E-value=1.3e-12 Score=110.66 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCCccccccccCCCCccccccc---c--eeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEe
Q 026255 6 TSELRYLQDVLFPYGQVSSNVLG---T--YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLN 80 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 80 (241)
+.+++.|+.++++.|+++..... . ....++++...+......+.++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 45566666666666666543211 1 222333333333322223334555555555555554444444444444444
Q ss_pred cccCcCCC--CCccccCCC---------------------CccceeeccCCcCCCCCchhHhhccccceEeccCCcccCC
Q 026255 81 LHNNNLQG--HIPSCLGNL---------------------TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGP 137 (241)
Q Consensus 81 Ls~N~l~~--~~p~~~~~l---------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~ 137 (241)
+++|.++. ..+..+..+ ++|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 44444421 222222222 3344444444444444444555555555555555555544
Q ss_pred CCCC-CccCccCcccccCCC
Q 026255 138 IPQG-KQFATFDNTSFDANS 156 (241)
Q Consensus 138 ~p~~-~~~~~l~~~~~~~n~ 156 (241)
.+.. ..+..+..+++++|.
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSC
T ss_pred ChhhccCCCCCCEEECCCCc
Confidence 3321 233445555555553
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.43 E-value=6e-13 Score=126.56 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=52.1
Q ss_pred CcCccEEEccCCCCCccchhhhcC-C-------CCCceEecccCcCCCCCccccC--CCCccceeeccCCcCCCCCchhH
Q 026255 49 PDILTGIILSNNRFDEAIPASISN-L-------KGLQVLNLHNNNLQGHIPSCLG--NLTNLESLDLSNNKFSGRIPQQL 118 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~-l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l 118 (241)
+++|+.|+|++|.++. +|..+.. . ++|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+
T Consensus 696 l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 696 GSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp TCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred CCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence 3455555555555553 2222211 1 15555555555555 4555444 55555555555555553 45555
Q ss_pred hhccccceEeccC------CcccCCCCCC-CccCccCcccccCCCC
Q 026255 119 VELTFLEFFNVSD------NYLTGPIPQG-KQFATFDNTSFDANSG 157 (241)
Q Consensus 119 ~~l~~L~~L~l~~------N~l~g~~p~~-~~~~~l~~~~~~~n~~ 157 (241)
..+++|+.|++++ |.+.+.+|.. ..+..+..+++++|..
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 5555555555543 4444444433 2344455555555543
No 83
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=116.40 Aligned_cols=107 Identities=23% Similarity=0.260 Sum_probs=67.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCc-cccCCCCccceeeccCC-cCCCCCchhHhhccccce
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNN-KFSGRIPQQLVELTFLEF 126 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~ 126 (241)
+++|++|++++|.+++..+..+..+++|++|++++|.++...+ ..+..+++|++|++++| .++...+..+..+++|++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 4667777777777776555557777777777777777773322 35677777777777777 355444556677777777
Q ss_pred EeccCCcccCCCCCC-CccCccCcccccCC
Q 026255 127 FNVSDNYLTGPIPQG-KQFATFDNTSFDAN 155 (241)
Q Consensus 127 L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n 155 (241)
|++++|.+++..|.. ..+..+..+++.+|
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 777777776655543 22333333444333
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=114.41 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=94.8
Q ss_pred CCccccccccCCCCcccccccc-----eeEEEEEeeccccc-------ccCccCcCccEEEccCCCCCccchh----hhc
Q 026255 8 ELRYLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKGRMM-------TYNKIPDILTGIILSNNRFDEAIPA----SIS 71 (241)
Q Consensus 8 ~l~~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~~~~L~~L~L~~n~i~~~~p~----~~~ 71 (241)
.++.|+.++++.|.++...... ....++++...+.. ....-+++|++|+|++|+++. ++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 4777888888888886533211 22233333333211 111235678888888888864 333 246
Q ss_pred CCCCCceEecccCcCCCCCccccCCC---CccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccC
Q 026255 72 NLKGLQVLNLHNNNLQGHIPSCLGNL---TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 148 (241)
Q Consensus 72 ~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~ 148 (241)
.+++|++|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |....++.+.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCcc
Confidence 77888888888888887667666665 58888888888887 6676553 6788888888888753 4345567777
Q ss_pred cccccCCCC
Q 026255 149 NTSFDANSG 157 (241)
Q Consensus 149 ~~~~~~n~~ 157 (241)
.+++++|+.
T Consensus 298 ~L~L~~N~l 306 (310)
T 4glp_A 298 NLTLDGNPF 306 (310)
T ss_dssp CEECSSTTT
T ss_pred EEECcCCCC
Confidence 778888765
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=4.8e-13 Score=111.94 Aligned_cols=102 Identities=25% Similarity=0.349 Sum_probs=61.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|+
T Consensus 111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence 45666666666666553 3455666666666666666633 345666666666666666664332 56666666666
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
+++|.+++ +|....+..+..+++.+|+.
T Consensus 185 L~~N~i~~-l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 185 LSKNHISD-LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCSSCCCB-CGGGTTCTTCSEEEEEEEEE
T ss_pred CCCCcCCC-ChhhccCCCCCEEECcCCcc
Confidence 66666663 34444555666666666653
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.43 E-value=3.5e-13 Score=116.85 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=50.3
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+.+..|..|..+++|++|++++|.++...+..|+.+++|++|++++|++++..|..+..+++|++|+
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 45566666666666555555555666666666666666533223345566666666666666554455555556666666
Q ss_pred ccCCcccC
Q 026255 129 VSDNYLTG 136 (241)
Q Consensus 129 l~~N~l~g 136 (241)
+++|.+++
T Consensus 172 l~~n~l~~ 179 (390)
T 3o6n_A 172 LSSNRLTH 179 (390)
T ss_dssp CCSSCCSB
T ss_pred CCCCcCCc
Confidence 66666553
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=5.1e-13 Score=114.38 Aligned_cols=110 Identities=22% Similarity=0.238 Sum_probs=69.5
Q ss_pred cCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255 45 YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124 (241)
Q Consensus 45 ~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 124 (241)
+..++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+.+++|++|++++|++++..+..+..+++|
T Consensus 47 P~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 47 PSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 33445567777777777766555566677777777777777766556666677777777777777764444446666777
Q ss_pred ceEeccCCcccCCCCC---CCccCccCcccccCC
Q 026255 125 EFFNVSDNYLTGPIPQ---GKQFATFDNTSFDAN 155 (241)
Q Consensus 125 ~~L~l~~N~l~g~~p~---~~~~~~l~~~~~~~n 155 (241)
++|++++|.+++ +|. ...+..+..+++.+|
T Consensus 127 ~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 127 TFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp SEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred CEEECCCCCCcc-cCchhhhccCCCCcEEECCCC
Confidence 777777776663 333 234555556666555
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.42 E-value=4.3e-13 Score=120.99 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=55.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L 127 (241)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|++++ ..|..+..+++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 4455555555555555544555555555555555555554444445555555555555555553 233445555555555
Q ss_pred eccCCcccCCCCC--CCccCccCcccccCCC
Q 026255 128 NVSDNYLTGPIPQ--GKQFATFDNTSFDANS 156 (241)
Q Consensus 128 ~l~~N~l~g~~p~--~~~~~~l~~~~~~~n~ 156 (241)
++++|.+.+.+|. ...+..+..+++.+|.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 5555553333332 1334444455555543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=2.4e-13 Score=110.17 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=91.4
Q ss_pred cccccccCCCCcccccccc-----eeEEEEEeecc-ccccc---CccCcCccEEEccC-CCCCccchhhhcCCCCCceEe
Q 026255 11 YLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKG-RMMTY---NKIPDILTGIILSN-NRFDEAIPASISNLKGLQVLN 80 (241)
Q Consensus 11 ~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~-~~~~~---~~~~~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~ 80 (241)
.|+.++++.|+++...... ....++++... +.... ..-+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 4556666666665433211 22333333332 21111 12356788888887 888776667777888888888
Q ss_pred cccCcCCCCCccccCCCCccc---eeeccCC-cCCCCCchhHhhccccc-eEeccCCcccCCCCCC-CccCccCcccccC
Q 026255 81 LHNNNLQGHIPSCLGNLTNLE---SLDLSNN-KFSGRIPQQLVELTFLE-FFNVSDNYLTGPIPQG-KQFATFDNTSFDA 154 (241)
Q Consensus 81 Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~ 154 (241)
+++|.+++ +|. +..+++|+ .|++++| ++++..+..|..+++|+ .|++++|.++ .+|.. .....+..+++.+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88888874 665 77777777 8888888 77755555677788888 8888888877 44432 2235666777777
Q ss_pred CC
Q 026255 155 NS 156 (241)
Q Consensus 155 n~ 156 (241)
|+
T Consensus 189 n~ 190 (239)
T 2xwt_C 189 NK 190 (239)
T ss_dssp CT
T ss_pred CC
Confidence 74
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=1.8e-13 Score=122.48 Aligned_cols=107 Identities=21% Similarity=0.102 Sum_probs=75.2
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccC-CCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG-NLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++. |. +..+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence 56677777777777776666777777777777777777766666665 577777777777777744 32 2347777788
Q ss_pred eccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
++++|.+++..|....+..+..+++++|..
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence 888887776656555566777777777754
No 91
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=9.6e-13 Score=119.92 Aligned_cols=88 Identities=31% Similarity=0.412 Sum_probs=46.4
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCC-chhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI-PQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 127 (241)
+++|+.|+|++|.|+ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 345555555555554 244455555555555555555553 44 4555555555555555555443 5555555555555
Q ss_pred eccCCcccCCCC
Q 026255 128 NVSDNYLTGPIP 139 (241)
Q Consensus 128 ~l~~N~l~g~~p 139 (241)
++++|++++.+|
T Consensus 539 ~L~~N~l~~~~~ 550 (567)
T 1dce_A 539 NLQGNSLCQEEG 550 (567)
T ss_dssp ECTTSGGGGSSS
T ss_pred EecCCcCCCCcc
Confidence 555555554433
No 92
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.41 E-value=1e-12 Score=111.89 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=83.4
Q ss_pred CCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL 81 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 81 (241)
+.+++.|+.++++.|.++.... .. ....+.+....+.... ...+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 4566677777777777764331 11 1112222222221111 2235667777777777766433 666777777777
Q ss_pred ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255 82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l 158 (241)
++|.+++ + +.+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++..|.. ..++.+..+++++|+..
T Consensus 251 ~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 251 GTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 7777763 3 346666777777777777663 33 3566667777777777666544432 33455666666666543
No 93
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=1.5e-13 Score=130.59 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=99.3
Q ss_pred CCCCccccccccCCCCccc------------------cccc------ceeEEEEEeecccccccC---ccCcCccEEEcc
Q 026255 6 TSELRYLQDVLFPYGQVSS------------------NVLG------TYDYSMTMNSKGRMMTYN---KIPDILTGIILS 58 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~------------------~~~~------~~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~ 58 (241)
+.+|++|+.++++.|.++. .... .....+.++...+....+ .-+++|+.|+|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 6677888888898888886 1111 112333443333222222 225677778888
Q ss_pred CCC-CCc-cchhhhcCCC-------CCceEecccCcCCCCCcc--ccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 59 NNR-FDE-AIPASISNLK-------GLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 59 ~n~-i~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+|+ +++ .+|..++.++ +|+.|++++|.++ .+|. .++.+++|+.|++++|+++ .+| .+..+++|+.|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 887 776 6676665554 7888888888877 7777 7778888888888888877 777 67777788888
Q ss_pred eccCCcccCCCCCC-CccCc-cCcccccCCCCC
Q 026255 128 NVSDNYLTGPIPQG-KQFAT-FDNTSFDANSGL 158 (241)
Q Consensus 128 ~l~~N~l~g~~p~~-~~~~~-l~~~~~~~n~~l 158 (241)
++++|.++ .+|.. ..+.. +..+++++|...
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 88888877 55543 44555 777777777643
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=1.6e-12 Score=109.61 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=32.6
Q ss_pred cCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcc
Q 026255 71 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT 150 (241)
Q Consensus 71 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~ 150 (241)
..+++|+.|++++|.+++ ++. +..+++|+.|++++|++++ ++. +..+++|++|++++|++++.. ....+..+..+
T Consensus 148 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L 222 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIV 222 (308)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEE
T ss_pred cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEE
Confidence 333444444444444432 222 3444444444444444442 221 344444444444444444322 12333444444
Q ss_pred cccCCC
Q 026255 151 SFDANS 156 (241)
Q Consensus 151 ~~~~n~ 156 (241)
++++|+
T Consensus 223 ~l~~N~ 228 (308)
T 1h6u_A 223 TLTNQT 228 (308)
T ss_dssp EEEEEE
T ss_pred EccCCe
Confidence 444444
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.40 E-value=1.2e-12 Score=121.27 Aligned_cols=108 Identities=20% Similarity=0.198 Sum_probs=60.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|..+..+++|++|+
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 45566666666666554444556666666666666666544445566666666666666666655555555566666666
Q ss_pred ccCCcccCCCCCC---CccCccCcccccCCC
Q 026255 129 VSDNYLTGPIPQG---KQFATFDNTSFDANS 156 (241)
Q Consensus 129 l~~N~l~g~~p~~---~~~~~l~~~~~~~n~ 156 (241)
+++|.+++..+.. .....+..+++++|.
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCc
Confidence 6666665443321 122445555555553
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=8.7e-13 Score=111.20 Aligned_cols=128 Identities=19% Similarity=0.248 Sum_probs=95.1
Q ss_pred CCCCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCc
Q 026255 6 TSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNN 85 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~ 85 (241)
+.+++.|+.++++.|.++... . ..-+++|++|++++|.+++. +. +..+++|+.|++++|.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~-----------------~-~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVS-----------------A-IAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCG-----------------G-GTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred HccCCCCCEEEccCCcCCCch-----------------h-hcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCc
Confidence 567778888888888876321 1 12367788888888888774 33 7888888888888888
Q ss_pred CCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255 86 LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158 (241)
Q Consensus 86 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l 158 (241)
+++ ++. ++.+++|+.|++++|++++ ++. +..+++|+.|++++|.+++.. ....+..+..+++++|...
T Consensus 141 l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 141 ITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCC
T ss_pred cCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh-hhcCCCCCCEEEccCCccC
Confidence 884 443 7788888888888888884 444 778888888888888887543 3556677777888887654
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=1.5e-12 Score=107.46 Aligned_cols=147 Identities=21% Similarity=0.166 Sum_probs=96.2
Q ss_pred CCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL 81 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 81 (241)
+++++.|+.++++.|.++.... .. ....+.++...+.... ..-+++|++|++++|.+++ +|. +.. ++|+.|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L 113 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFL 113 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEc
Confidence 3456666777777777764331 11 1222222222221111 2236678888888888876 333 223 77888888
Q ss_pred ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCCC
Q 026255 82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCG 160 (241)
Q Consensus 82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~ 160 (241)
++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++. +....+..+..+++.+|+..+.
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 8888874 44 47888888999999988884 44 577888889999999988865 5556677788888888876554
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=113.67 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=81.5
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCC--C--ccccCCCCccceeeccCCcCCCCCch----hHhh
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH--I--PSCLGNLTNLESLDLSNNKFSGRIPQ----QLVE 120 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~ 120 (241)
+++|++|+|++|.+.+..+..+..+++|++|++++|.+.+. + +..++.+++|++|++++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 67888899999998887778888888899999999887642 2 223467888888888888887 4444 2466
Q ss_pred ccccceEeccCCcccCCCCCC-Ccc---CccCcccccCCCCC
Q 026255 121 LTFLEFFNVSDNYLTGPIPQG-KQF---ATFDNTSFDANSGL 158 (241)
Q Consensus 121 l~~L~~L~l~~N~l~g~~p~~-~~~---~~l~~~~~~~n~~l 158 (241)
+++|++|++++|.+++..|.. ..+ +.+..+++++|...
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 788888888888888775543 222 57778888887654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.1e-12 Score=120.45 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=100.6
Q ss_pred CCCCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255 4 FNTSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL 79 (241)
Q Consensus 4 ~~~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 79 (241)
..+.+|+.|+.|+++.|+++.... .. .+..+.++...+.. ....-+++|+.|+|++|.+.+. +.+..+++|+.|
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 136 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 136 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence 345667777777887777765331 11 12222332222211 1123367788888888888763 347788888888
Q ss_pred ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+++ +|....+..+..+++.+|+.
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEEE
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCcC
Confidence 8888888854 567888888889998888886555 7788888899999888885 45556677777888887754
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=2.4e-13 Score=127.27 Aligned_cols=89 Identities=27% Similarity=0.391 Sum_probs=37.8
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccc-cceEe
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTF-LEFFN 128 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~ 128 (241)
++|++|+|++|.|+ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|++.+|..+..+.. +..++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 34444444444444 23444444444444444444444 34444444444444444444444444443332211 11234
Q ss_pred ccCCcccCCCCC
Q 026255 129 VSDNYLTGPIPQ 140 (241)
Q Consensus 129 l~~N~l~g~~p~ 140 (241)
+++|.++|.+|.
T Consensus 348 l~~N~l~~~~p~ 359 (727)
T 4b8c_D 348 LRDNRPEIPLPH 359 (727)
T ss_dssp HHHCCCCCCCCC
T ss_pred hccCcccCcCcc
Confidence 444444444443
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=9.5e-13 Score=123.25 Aligned_cols=106 Identities=28% Similarity=0.396 Sum_probs=82.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+..|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|+|+ .+|..|..+++|++|+
T Consensus 223 l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 5678888888888874 5666667888888888888888 78888888888888888888888 7788888888888888
Q ss_pred ccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255 129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l 158 (241)
|++|.++ .+|.. ..+..+..+++++|...
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 8888887 55543 55667777778777654
No 102
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.38 E-value=6.1e-13 Score=119.38 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=73.2
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L 127 (241)
+++|++|+|++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++++|++++ .+|..+..+++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 567777888888777766777777777888888888777 56655 67777888888887775 356777777788888
Q ss_pred eccCCcccCCCCCCCccCcc--CcccccCCCC
Q 026255 128 NVSDNYLTGPIPQGKQFATF--DNTSFDANSG 157 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l--~~~~~~~n~~ 157 (241)
++++|.+++. ....+..+ ..+++.+|..
T Consensus 121 ~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 121 GLSTTHLEKS--SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEEESSCCGG--GGGGGTTSCEEEEEEEECTT
T ss_pred EecCcccchh--hccccccceeeEEEeecccc
Confidence 8887777642 12233444 6666666654
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.38 E-value=1.5e-12 Score=105.42 Aligned_cols=151 Identities=14% Similarity=0.096 Sum_probs=110.0
Q ss_pred CCCCCccccccccCCCC-cccccccc-----eeEEEEEee-cccccccC---ccCcCccEEEccCCCCCccchhhhcCCC
Q 026255 5 NTSELRYLQDVLFPYGQ-VSSNVLGT-----YDYSMTMNS-KGRMMTYN---KIPDILTGIILSNNRFDEAIPASISNLK 74 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~-l~~~~~~~-----~~~~~~~~~-~~~~~~~~---~~~~~L~~L~L~~n~i~~~~p~~~~~l~ 74 (241)
.+.+++.|+.++++.|+ ++...... ....+.++. ..+..... .-+++|++|++++|.+++ +|. +..++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 46678888888999886 76544322 233444544 34332221 236789999999999988 555 88888
Q ss_pred CCc---eEecccC-cCCCCCccccCCCCccc-eeeccCCcCCCCCchhHhhccccceEeccCCc-ccCCCCCC-Ccc-Cc
Q 026255 75 GLQ---VLNLHNN-NLQGHIPSCLGNLTNLE-SLDLSNNKFSGRIPQQLVELTFLEFFNVSDNY-LTGPIPQG-KQF-AT 146 (241)
Q Consensus 75 ~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~-l~g~~p~~-~~~-~~ 146 (241)
+|+ .|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|+.|++++|+ +++..+.. ..+ ..
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 888 9999999 99876677799999999 9999999998 566543344889999999995 88544443 345 67
Q ss_pred cCcccccCCCCC
Q 026255 147 FDNTSFDANSGL 158 (241)
Q Consensus 147 l~~~~~~~n~~l 158 (241)
+..+++++|...
T Consensus 207 L~~L~l~~N~l~ 218 (239)
T 2xwt_C 207 PSLLDVSQTSVT 218 (239)
T ss_dssp CSEEECTTCCCC
T ss_pred CcEEECCCCccc
Confidence 888888888654
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.38 E-value=7.5e-13 Score=125.84 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=91.6
Q ss_pred cCcCccEEEccCCCCCccc-hhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh--Hhhcccc
Q 026255 48 IPDILTGIILSNNRFDEAI-PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ--LVELTFL 124 (241)
Q Consensus 48 ~~~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L 124 (241)
-+++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|+.+++|++|++++|.+++.+|.. +..+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 3778999999999655544 778899999999999999999888999999999999999999998766665 8889999
Q ss_pred ceEeccCCcccCCCCC--CCccCccCcccccCCCCC
Q 026255 125 EFFNVSDNYLTGPIPQ--GKQFATFDNTSFDANSGL 158 (241)
Q Consensus 125 ~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~~n~~l 158 (241)
++|++++|.+++..+. ...+..+..+++++|...
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9999999999876553 356778888888888643
No 105
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=118.11 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=84.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 67788888888888887777788888888888888888877777888888888888888888854444577888888888
Q ss_pred ccCCcccC-CCCCC-CccCccCcccccCCCC
Q 026255 129 VSDNYLTG-PIPQG-KQFATFDNTSFDANSG 157 (241)
Q Consensus 129 l~~N~l~g-~~p~~-~~~~~l~~~~~~~n~~ 157 (241)
+++|.+++ .+|.. ..+..+..+++++|..
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 88888876 34543 4466777788877754
No 106
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.36 E-value=1e-12 Score=119.25 Aligned_cols=84 Identities=27% Similarity=0.287 Sum_probs=40.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
++++++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|+++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 344555555555554444444555555555555555555444444455555555555555544 33333 444455555
Q ss_pred ccCCccc
Q 026255 129 VSDNYLT 135 (241)
Q Consensus 129 l~~N~l~ 135 (241)
+++|.++
T Consensus 128 Ls~N~l~ 134 (562)
T 3a79_B 128 LSFNDFD 134 (562)
T ss_dssp CCSSCCS
T ss_pred CCCCCcc
Confidence 5555444
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=4.9e-13 Score=113.02 Aligned_cols=106 Identities=22% Similarity=0.116 Sum_probs=49.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCcccc-CCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|++++. |. ...+++|++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 3444555555555544444444445555555555555554333333 2345555555555555422 22 1224455555
Q ss_pred eccCCcccCCCCCCCccCccCcccccCCC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDANS 156 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~ 156 (241)
++++|.+++..+....+..+..+++++|.
T Consensus 197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred ECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 55555555433333334444555555553
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.9e-12 Score=106.70 Aligned_cols=146 Identities=17% Similarity=0.161 Sum_probs=105.0
Q ss_pred CCCCccccccccCCCCccccc-ccc--eeEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255 6 TSELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL 81 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 81 (241)
..+++.+..+.++.+.++... ... ....+.++...+.. .....+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 15 d~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp SHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred CHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 345666666777777776433 111 12223333332221 112347899999999999988554 899999999999
Q ss_pred ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255 82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC 159 (241)
Q Consensus 82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc 159 (241)
++|.+++ +|.. .. ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. +....+..+..+++++|....
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc
Confidence 9999994 5543 33 899999999999994 44 588999999999999999854 555667888889999986544
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=4.7e-12 Score=105.86 Aligned_cols=144 Identities=24% Similarity=0.276 Sum_probs=98.1
Q ss_pred CCCccccccccCCCCcccccc-cc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255 7 SELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH 82 (241)
Q Consensus 7 ~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls 82 (241)
+.++.|+.++++.+.++.... .. ....+.++...+.... ..-+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 345556666666666654321 11 1222222222221111 2336788899999999876 33 38888999999999
Q ss_pred cCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 83 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 83 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
+|.+++ + +.+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..| ...+..+..+++++|..
T Consensus 121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 121 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp TSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 999884 4 4578888999999999998854 567888999999999999886554 56677788888888854
No 110
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2.5e-12 Score=99.52 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=86.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+.+|++|++++|.++. +|......++|+.|++++|.+++. ..++.+++|++|++++|++++..+..+..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 6789999999999986 454333344999999999999954 6789999999999999999965555568999999999
Q ss_pred ccCCcccCCCCC---CCccCccCcccccCCCCC
Q 026255 129 VSDNYLTGPIPQ---GKQFATFDNTSFDANSGL 158 (241)
Q Consensus 129 l~~N~l~g~~p~---~~~~~~l~~~~~~~n~~l 158 (241)
+++|.++ .+|. ...++.+..+++.+|+..
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 9999996 4554 345677888899999754
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=2.7e-12 Score=116.94 Aligned_cols=103 Identities=20% Similarity=0.229 Sum_probs=92.6
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
.|+.|+|++|.|++ +|. ++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999988 565 999999999999999999 889999999999999999999995 77 79999999999999
Q ss_pred CCcccCCC-CCC-CccCccCcccccCCCCC
Q 026255 131 DNYLTGPI-PQG-KQFATFDNTSFDANSGL 158 (241)
Q Consensus 131 ~N~l~g~~-p~~-~~~~~l~~~~~~~n~~l 158 (241)
+|.+++.. |.. ..+..+..+++++|+..
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 99999875 544 56788899999999753
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.30 E-value=6.1e-12 Score=111.68 Aligned_cols=104 Identities=28% Similarity=0.389 Sum_probs=58.8
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 4455555555555554322 4555566666666666554333 45556666666666666533 2455666666666
Q ss_pred ccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLC 159 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc 159 (241)
+++|++++..| ...+..+..+++.+|++..
T Consensus 360 l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 360 AGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 66666665555 4445556666666665443
No 113
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=5e-12 Score=107.88 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=94.8
Q ss_pred cEEEccCC-CCCccchhhhcCCCCCceEeccc-CcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 53 TGIILSNN-RFDEAIPASISNLKGLQVLNLHN-NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 53 ~~L~L~~n-~i~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
..++.+++ ++++ +|. +..+++|+.|+|++ |.+++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788888 8987 677 99999999999996 99998888899999999999999999998888899999999999999
Q ss_pred CCcccCCCCCCCccCccCcccccCCCCCCCCC
Q 026255 131 DNYLTGPIPQGKQFATFDNTSFDANSGLCGRP 162 (241)
Q Consensus 131 ~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~ 162 (241)
+|+|++..+.......+..+++.+|++.|.|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999766655444458889999999999874
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.28 E-value=1.4e-11 Score=104.88 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=89.0
Q ss_pred CCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL 81 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 81 (241)
+.+++.|+.++++.+.+..... .. ....+.++...+.. .....+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l 228 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence 4566667777777776654321 11 12222222222211 112335677777888777766433 677777888888
Q ss_pred ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
++|.+++ .+. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ ++....+..+..+++.+|..
T Consensus 229 ~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 229 GNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp CSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC
T ss_pred cCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcC
Confidence 8887773 333 6777788888888887774 3 346677778888888887774 34445556677777777654
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.27 E-value=2.6e-11 Score=107.66 Aligned_cols=100 Identities=26% Similarity=0.379 Sum_probs=53.0
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. +. +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 4456666666666655333 55556666666666666532 22 5555666666666666653322 45555666666
Q ss_pred ccCCcccCCCCCCCccCccCcccccCC
Q 026255 129 VSDNYLTGPIPQGKQFATFDNTSFDAN 155 (241)
Q Consensus 129 l~~N~l~g~~p~~~~~~~l~~~~~~~n 155 (241)
+++|.+++..| ...+..+..+++.+|
T Consensus 316 L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 316 LYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred CcCCcCCCchh-hccCccCCEeECCCC
Confidence 66666554433 223344444444444
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=1.2e-11 Score=113.50 Aligned_cols=145 Identities=23% Similarity=0.290 Sum_probs=107.0
Q ss_pred CCCCccccccccCCCCccccc-ccc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255 6 TSELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL 81 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 81 (241)
+..|+.|+.++++.+.+.... +.. ....+.++...+.... ..-+++|+.|+|++|.+.+ +| .+..+++|+.|+|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 455777888888888887542 122 2223333333222111 2347789999999999977 33 6888999999999
Q ss_pred ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
++|.+++ ++ .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| ...+..+..+++++|..
T Consensus 117 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 117 EHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp TTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 9999984 44 588899999999999999854 568889999999999999997666 66678888888888854
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=4.5e-11 Score=106.11 Aligned_cols=80 Identities=35% Similarity=0.345 Sum_probs=46.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|++++ +| +..+++|+.|+
T Consensus 169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 3455555555555555 22 45555566666666665532 25556666666666666664 44 55566666666
Q ss_pred ccCCcccCC
Q 026255 129 VSDNYLTGP 137 (241)
Q Consensus 129 l~~N~l~g~ 137 (241)
+++|++++.
T Consensus 240 l~~N~l~~~ 248 (457)
T 3bz5_A 240 CSVNPLTEL 248 (457)
T ss_dssp CCSSCCSCC
T ss_pred eeCCcCCCc
Confidence 666666654
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=2.5e-11 Score=110.48 Aligned_cols=97 Identities=29% Similarity=0.393 Sum_probs=49.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc----
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL---- 124 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L---- 124 (241)
+++|+.|+|++|.|++ +|. .+++|+.|+|++|.+++ +|. |. ++|+.|++++|+|+ .+|. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE 206 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence 4455555555555554 332 34555555555555553 444 43 55566666666555 4444 332 44
Q ss_pred ---ceEeccCCcccCCCCC-CCccCccCcccccCCCCC
Q 026255 125 ---EFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSGL 158 (241)
Q Consensus 125 ---~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~l 158 (241)
+.|++++|.++ .+|. ...+..+..+++++|+..
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 56666666665 3343 233455555566666543
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=2e-11 Score=108.37 Aligned_cols=38 Identities=26% Similarity=0.220 Sum_probs=19.4
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCC
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 89 (241)
+++|+.|++++|++++ +| +..+++|+.|++++|.+++.
T Consensus 211 l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 3455555555555554 23 44555555555555555543
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.20 E-value=8.1e-11 Score=107.16 Aligned_cols=77 Identities=30% Similarity=0.469 Sum_probs=36.8
Q ss_pred ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255 47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126 (241)
Q Consensus 47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 126 (241)
..+++|+.|++++|.|++ +|. +.. +|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|+.
T Consensus 97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~ 164 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV 164 (571)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence 334555555555555554 333 332 45555555555553 333 34445555555555542 333 2344444
Q ss_pred EeccCCccc
Q 026255 127 FNVSDNYLT 135 (241)
Q Consensus 127 L~l~~N~l~ 135 (241)
|++++|.++
T Consensus 165 L~Ls~N~L~ 173 (571)
T 3cvr_A 165 LSVRNNQLT 173 (571)
T ss_dssp EECCSSCCS
T ss_pred EECCCCCCC
Confidence 555555444
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.19 E-value=2.8e-11 Score=103.60 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=84.4
Q ss_pred EEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCc-cccCCCCccce-eeccCCcC
Q 026255 33 SMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLES-LDLSNNKF 110 (241)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l 110 (241)
.+.|+.+++...+..+++++++|+|++|+|+.+.+..|.++++|++|+|++|.+.+.+| ..|.+++++.. +.+..|++
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 35677777766666778889999999999988666778999999999999999866555 45778887765 56677888
Q ss_pred CCCCchhHhhccccceEeccCCcccCCCC
Q 026255 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIP 139 (241)
Q Consensus 111 ~~~~p~~l~~l~~L~~L~l~~N~l~g~~p 139 (241)
+...|..|..+++|++|++++|.+++..+
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred cccCchhhhhccccccccccccccccCCc
Confidence 86667788888999999999998875433
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.17 E-value=6.4e-11 Score=108.95 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=37.3
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 129 (241)
++|+.|++++|.|++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 444444555554444 22 23344555555555544 3333 3344555555555554 44444555555555555
Q ss_pred cCCcccCC
Q 026255 130 SDNYLTGP 137 (241)
Q Consensus 130 ~~N~l~g~ 137 (241)
++|++++.
T Consensus 292 ~~N~l~~~ 299 (622)
T 3g06_A 292 EGNPLSER 299 (622)
T ss_dssp CSCCCCHH
T ss_pred cCCCCCCc
Confidence 55555443
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.13 E-value=2e-10 Score=105.66 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=52.4
Q ss_pred CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccc
Q 026255 74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSF 152 (241)
Q Consensus 74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~ 152 (241)
++|+.|++++|.+++ +| ..+++|+.|++++|+|+ .+|. .+++|+.|++++|.++ .+|.. ..+..+..+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 566777777777763 44 34567777788888777 5555 4577888888888887 55543 45667777888
Q ss_pred cCCCCC
Q 026255 153 DANSGL 158 (241)
Q Consensus 153 ~~n~~l 158 (241)
.+|+..
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 888754
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.13 E-value=2.2e-10 Score=101.61 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCCccccccccCCCCcccccc-cceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccC
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL-GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN 84 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N 84 (241)
+.+++.|+.++++.|+++.... ......+.++...+.. ++..+++|++|++++|.+++. |.. .++|+.|++++|
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N 307 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSN 307 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcc-cCc---CCcCCEEECcCC
Confidence 4455666666666666654211 1112222222222221 222345566666666665551 110 134444444444
Q ss_pred cCCCCCccccCCC-CccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255 85 NLQGHIPSCLGNL-TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC 159 (241)
Q Consensus 85 ~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc 159 (241)
.+++ ++ .+ ++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|. .+..+..+++++|...+
T Consensus 308 ~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 308 EIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSS
T ss_pred cCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCc
Confidence 4442 11 12 356666666666663 4432 355666666666666 3444 34555666666665443
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.12 E-value=8.5e-11 Score=104.26 Aligned_cols=136 Identities=19% Similarity=0.164 Sum_probs=73.3
Q ss_pred ccccccccCCCCcccccc-cceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCC-CCCceEecccCcCC
Q 026255 10 RYLQDVLFPYGQVSSNVL-GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNL-KGLQVLNLHNNNLQ 87 (241)
Q Consensus 10 ~~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l-~~L~~L~Ls~N~l~ 87 (241)
++|+.++++.|+++.... ......++++...+.. ...++++|+.|++++|.+++. + .+ ++|+.|++++|.++
T Consensus 257 ~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 257 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLI 330 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCS
T ss_pred cccCEEECCCCcccccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCccc
Confidence 566677777777765221 1112223333322221 223456788888888887662 2 22 47788888888887
Q ss_pred CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC--CCCCC-Ccc-------------CccCccc
Q 026255 88 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG--PIPQG-KQF-------------ATFDNTS 151 (241)
Q Consensus 88 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~-~~~-------------~~l~~~~ 151 (241)
+ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.. ..+ ..+..++
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------
T ss_pred c-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence 4 5543 467788888888887 5665 36778888888888877 55543 122 4566677
Q ss_pred ccCCCCCC
Q 026255 152 FDANSGLC 159 (241)
Q Consensus 152 ~~~n~~lc 159 (241)
+++|+...
T Consensus 403 ls~N~l~~ 410 (454)
T 1jl5_A 403 VETNPLRE 410 (454)
T ss_dssp --------
T ss_pred CCCCcCCc
Confidence 77776543
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=1.7e-12 Score=102.34 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=87.3
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 6789999999999987 55 7888999999999999998 778777778899999999999984 55 588899999999
Q ss_pred ccCCcccCCCC--CCCccCccCcccccCCCCCCC
Q 026255 129 VSDNYLTGPIP--QGKQFATFDNTSFDANSGLCG 160 (241)
Q Consensus 129 l~~N~l~g~~p--~~~~~~~l~~~~~~~n~~lc~ 160 (241)
+++|.+++..+ ....+..+..+++.+|+..|.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 99999884222 234567788888888876554
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=6.4e-12 Score=108.80 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=69.8
Q ss_pred CcCccEEEccCCCCCc-----cchhhhcCCCCCceEecccCcCC----CCCccccCCCCccceeeccCCcCCCC----Cc
Q 026255 49 PDILTGIILSNNRFDE-----AIPASISNLKGLQVLNLHNNNLQ----GHIPSCLGNLTNLESLDLSNNKFSGR----IP 115 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p 115 (241)
+++|++|++++|.+.. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++. +|
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 3466677777776652 23335666677777777777764 45666666777777777777777644 34
Q ss_pred hhHhh--ccccceEeccCCcccC----CCCCCC--ccCccCcccccCCCCCC
Q 026255 116 QQLVE--LTFLEFFNVSDNYLTG----PIPQGK--QFATFDNTSFDANSGLC 159 (241)
Q Consensus 116 ~~l~~--l~~L~~L~l~~N~l~g----~~p~~~--~~~~l~~~~~~~n~~lc 159 (241)
..+.. +++|+.|++++|.+++ .+|... .++.+..+++.+|+...
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 44433 6777777777777765 244332 24667777777776544
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.07 E-value=2.5e-11 Score=102.74 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=79.1
Q ss_pred CCCCccccccccCCCCcccccc----cce--eEEEEEeeccccccc---CccCcCccEEEccCC-CCCcc-chhhhcCCC
Q 026255 6 TSELRYLQDVLFPYGQVSSNVL----GTY--DYSMTMNSKGRMMTY---NKIPDILTGIILSNN-RFDEA-IPASISNLK 74 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~~~~----~~~--~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n-~i~~~-~p~~~~~l~ 74 (241)
+.+++.|+.++++.|.++...+ ... ...+.++...+.... ..-+++|++|++++| .+++. ++..+..++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 4456778888888887653211 111 112222221111100 011556666666666 45542 455566666
Q ss_pred CCceEecccC-cCCCC-CccccCCCC-ccceeeccCC--cCC-CCCchhHhhccccceEeccCCc-ccCCCC-CCCccCc
Q 026255 75 GLQVLNLHNN-NLQGH-IPSCLGNLT-NLESLDLSNN--KFS-GRIPQQLVELTFLEFFNVSDNY-LTGPIP-QGKQFAT 146 (241)
Q Consensus 75 ~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~l~~N~-l~g~~p-~~~~~~~ 146 (241)
+|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+ ....++.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 6666666666 66543 445555666 6666666666 343 2345555566666666666666 443222 2233455
Q ss_pred cCcccccCCC
Q 026255 147 FDNTSFDANS 156 (241)
Q Consensus 147 l~~~~~~~n~ 156 (241)
+..+++.+|.
T Consensus 249 L~~L~l~~~~ 258 (336)
T 2ast_B 249 LQHLSLSRCY 258 (336)
T ss_dssp CCEEECTTCT
T ss_pred CCEeeCCCCC
Confidence 5555665553
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.02 E-value=2.2e-11 Score=103.10 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=97.7
Q ss_pred ccccccccCCCCccccccc----ceeEEEEEeecccccc-c---CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255 10 RYLQDVLFPYGQVSSNVLG----TYDYSMTMNSKGRMMT-Y---NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL 81 (241)
Q Consensus 10 ~~L~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~-~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 81 (241)
+.++.++++.|.++..... .....++++...+... . ..-+++|++|++++|.+++..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 5566777777777653321 1122222222222111 1 123678888999988888777888888888999999
Q ss_pred ccC-cCCCC-CccccCCCCccceeeccCC-cCCCC-CchhHhhcc-ccceEeccCCc--cc-CCCCCC-CccCccCcccc
Q 026255 82 HNN-NLQGH-IPSCLGNLTNLESLDLSNN-KFSGR-IPQQLVELT-FLEFFNVSDNY--LT-GPIPQG-KQFATFDNTSF 152 (241)
Q Consensus 82 s~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~-~L~~L~l~~N~--l~-g~~p~~-~~~~~l~~~~~ 152 (241)
++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|.. ..++.+..+++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 888 57652 5666778888999999888 88753 566777888 89999998884 43 222221 24567777788
Q ss_pred cCCCC
Q 026255 153 DANSG 157 (241)
Q Consensus 153 ~~n~~ 157 (241)
.+|..
T Consensus 230 ~~~~~ 234 (336)
T 2ast_B 230 SDSVM 234 (336)
T ss_dssp TTCTT
T ss_pred CCCCc
Confidence 87764
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.01 E-value=8.3e-11 Score=101.75 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=97.2
Q ss_pred ccccccccCCCCccccccc---------ceeEEEEEeecccccc--------cCccCcCccEEEccCCCCC----ccchh
Q 026255 10 RYLQDVLFPYGQVSSNVLG---------TYDYSMTMNSKGRMMT--------YNKIPDILTGIILSNNRFD----EAIPA 68 (241)
Q Consensus 10 ~~L~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~--------~~~~~~~L~~L~L~~n~i~----~~~p~ 68 (241)
+.|+.++++.|+++..... .....+.+....+... ...-+++|+.|+|++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 6777778888877632221 1233344444433310 2234678999999999996 56788
Q ss_pred hhcCCCCCceEecccCcCCCC----Ccccc--CCCCccceeeccCCcCCC----CCchhH-hhccccceEeccCCcccCC
Q 026255 69 SISNLKGLQVLNLHNNNLQGH----IPSCL--GNLTNLESLDLSNNKFSG----RIPQQL-VELTFLEFFNVSDNYLTGP 137 (241)
Q Consensus 69 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~g~ 137 (241)
.+..+++|+.|+|++|.+++. +|..+ +.+++|+.|++++|.+++ .+|..+ ..+++|++|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 899999999999999999865 56666 448999999999999996 478777 5689999999999999976
Q ss_pred CC
Q 026255 138 IP 139 (241)
Q Consensus 138 ~p 139 (241)
.+
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 54
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=1.2e-10 Score=100.11 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=96.5
Q ss_pred CccccccccCCCCcccccc----cc------eeEEEEEeecccccccC----cc----CcCccEEEccCCCCCccchhhh
Q 026255 9 LRYLQDVLFPYGQVSSNVL----GT------YDYSMTMNSKGRMMTYN----KI----PDILTGIILSNNRFDEAIPASI 70 (241)
Q Consensus 9 l~~L~~~~~~~~~l~~~~~----~~------~~~~~~~~~~~~~~~~~----~~----~~~L~~L~L~~n~i~~~~p~~~ 70 (241)
.+.|+.++++.|.++.... .. ....++++...+..... .. +++|++|+|++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4558888999998876442 11 23334444433332211 11 2788899999998887666644
Q ss_pred c----CC-CCCceEecccCcCCCCCcccc----CC-CCccceeeccCCcCCCCCchh----Hhhcc-ccceEeccCCccc
Q 026255 71 S----NL-KGLQVLNLHNNNLQGHIPSCL----GN-LTNLESLDLSNNKFSGRIPQQ----LVELT-FLEFFNVSDNYLT 135 (241)
Q Consensus 71 ~----~l-~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~Ls~N~l~~~~p~~----l~~l~-~L~~L~l~~N~l~ 135 (241)
. .+ ++|+.|++++|.+++..+..+ .. ..+|++|++++|++++..+.. +..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3 34 789999999999886665443 33 258899999999888644443 34444 8999999999887
Q ss_pred CCCCCC-----Ccc-CccCcccccCCCC
Q 026255 136 GPIPQG-----KQF-ATFDNTSFDANSG 157 (241)
Q Consensus 136 g~~p~~-----~~~-~~l~~~~~~~n~~ 157 (241)
+..+.. ... ..+..+++++|..
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 654421 112 4777888888853
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.98 E-value=8.1e-11 Score=101.14 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=45.6
Q ss_pred CccEEEccCCCCCccchhhhcCC-----CCCceEecccCcCCCCCccccC----CC-CccceeeccCCcCCCCCchhHhh
Q 026255 51 ILTGIILSNNRFDEAIPASISNL-----KGLQVLNLHNNNLQGHIPSCLG----NL-TNLESLDLSNNKFSGRIPQQLVE 120 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~l~~ 120 (241)
+|++|+|++|.+++..+..+..+ ++|++|++++|.+++..+..+. .+ ++|+.|++++|++++..+..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 56666666666655444444443 5566666666666544444322 22 55666666666665444443332
Q ss_pred -----ccccceEeccCCccc
Q 026255 121 -----LTFLEFFNVSDNYLT 135 (241)
Q Consensus 121 -----l~~L~~L~l~~N~l~ 135 (241)
.++|++|++++|.++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCceeEEEccCCcCC
Confidence 135666666666655
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=5.7e-12 Score=99.31 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=86.7
Q ss_pred cCccEEEccCCCCCccchh------hhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccc
Q 026255 50 DILTGIILSNNRFDEAIPA------SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTF 123 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 123 (241)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 4566667777777666655 89999999999999999995 77 7899999999999999999 78888888899
Q ss_pred cceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255 124 LEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG 157 (241)
Q Consensus 124 L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~ 157 (241)
|+.|++++|.+++ +|....+..+..+++++|..
T Consensus 95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEEC
T ss_pred CCEEECcCCcCCc-CCccccCCCCCEEECCCCcC
Confidence 9999999999985 55445566788888888853
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.92 E-value=1.8e-09 Score=92.37 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=73.7
Q ss_pred CCCCccccccccCCCCccc-ccc------cceeEEEEEeecccccc---cCccCcCccEEEccCCCCCccchhhhcCCC-
Q 026255 6 TSELRYLQDVLFPYGQVSS-NVL------GTYDYSMTMNSKGRMMT---YNKIPDILTGIILSNNRFDEAIPASISNLK- 74 (241)
Q Consensus 6 ~~~l~~L~~~~~~~~~l~~-~~~------~~~~~~~~~~~~~~~~~---~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~- 74 (241)
+++|++|+.++++.|++.. ... .............+... ...-+++|++|++++|.+.+..+..+....
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 129 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence 5677777778888777633 111 11122223332222221 122356677777777776654333222222
Q ss_pred -------------------------CCceEecccCcCCCCCccccCCCCccceeeccC-CcCCCCCc-hhHhhccccceE
Q 026255 75 -------------------------GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN-NKFSGRIP-QQLVELTFLEFF 127 (241)
Q Consensus 75 -------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L 127 (241)
.++.|++++|.++ .+|.......+|+.+++++ |.++ .+| +.|..+++|+.|
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL 207 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchh
Confidence 3455566666666 3443333445666666653 4444 444 345667777777
Q ss_pred eccCCcccCCCCCCCccCccCcccccC
Q 026255 128 NVSDNYLTGPIPQGKQFATFDNTSFDA 154 (241)
Q Consensus 128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~ 154 (241)
++++|+++ .+|.. .+..+..+...+
T Consensus 208 dLs~N~l~-~lp~~-~~~~L~~L~~l~ 232 (350)
T 4ay9_X 208 DISRTRIH-SLPSY-GLENLKKLRARS 232 (350)
T ss_dssp ECTTSCCC-CCCSS-SCTTCCEEECTT
T ss_pred hcCCCCcC-ccChh-hhccchHhhhcc
Confidence 77777776 34432 233444444333
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.79 E-value=1.2e-10 Score=102.69 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=71.4
Q ss_pred CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCCCccccC-----CCCccceeeccCCcCCCC----Cc
Q 026255 49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGHIPSCLG-----NLTNLESLDLSNNKFSGR----IP 115 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p 115 (241)
+++|++|++++|.++.. ++..+..+++|+.|++++|.+++..+..+. ..++|+.|++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 56788888888888764 466677788888888888887644333332 225788888888887754 45
Q ss_pred hhHhhccccceEeccCCcccCCCCCC------CccCccCcccccCCC
Q 026255 116 QQLVELTFLEFFNVSDNYLTGPIPQG------KQFATFDNTSFDANS 156 (241)
Q Consensus 116 ~~l~~l~~L~~L~l~~N~l~g~~p~~------~~~~~l~~~~~~~n~ 156 (241)
..+..+++|++|++++|.+++..+.. .....+..+++++|.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 55666788888888888776432211 013456666666664
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.78 E-value=5.3e-10 Score=98.48 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCccccccccCCCCccccccc---------ceeEEEEEeecccccc----cC----ccCcCccEEEccCCCCCcc----c
Q 026255 8 ELRYLQDVLFPYGQVSSNVLG---------TYDYSMTMNSKGRMMT----YN----KIPDILTGIILSNNRFDEA----I 66 (241)
Q Consensus 8 ~l~~L~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~----~~----~~~~~L~~L~L~~n~i~~~----~ 66 (241)
+++.|+.++++.|.++..... .....++++...+... +. ...++|++|++++|.+++. +
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 567888889999888753210 0111122222111100 00 0113555566666555543 3
Q ss_pred hhhhcCCCCCceEecccCcCCCCCccccCC-----CCccceeeccCCcCCC----CCchhHhhccccceEeccCCccc
Q 026255 67 PASISNLKGLQVLNLHNNNLQGHIPSCLGN-----LTNLESLDLSNNKFSG----RIPQQLVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 67 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~ 135 (241)
+..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|++++ .+|..+..+++|++|++++|+++
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 344445555666666666555333322221 3455666666665553 44555555555666666665554
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=1.7e-08 Score=85.42 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=74.3
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccc-eeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLE-SLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+++|+.++|++|+++.+.+..|.++.+|+.+++++| ++...+..|.++.+|+ .+++.+ .++...+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999998888888999999999999998 7766677899999999 999988 7775666789999999999
Q ss_pred eccCCccc
Q 026255 128 NVSDNYLT 135 (241)
Q Consensus 128 ~l~~N~l~ 135 (241)
+++.|.++
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 99999887
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=2.5e-08 Score=82.21 Aligned_cols=67 Identities=30% Similarity=0.378 Sum_probs=39.7
Q ss_pred cCCCCCceEecccCcCCC--CCccccCCCCccceeeccCCcCCCCCchhHhhcc--ccceEeccCCcccCCCC
Q 026255 71 SNLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT--FLEFFNVSDNYLTGPIP 139 (241)
Q Consensus 71 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~l~~N~l~g~~p 139 (241)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345666666666666664 2334455666666666666666633 2233333 66666676666665554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=5.1e-09 Score=90.53 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=70.9
Q ss_pred CcCccEEEccCCCCCccchhhh-----cCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCC----Cc
Q 026255 49 PDILTGIILSNNRFDEAIPASI-----SNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGR----IP 115 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p 115 (241)
+.+|+.|+|++|.++......+ ...+.|+.|+|++|.++.. ++..+...++|++|+|++|.++.. ++
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 4578888888888865433333 2457788888888887632 344456677888888888887642 23
Q ss_pred hhHhhccccceEeccCCcccCCCC----CC-CccCccCcccccCCC
Q 026255 116 QQLVELTFLEFFNVSDNYLTGPIP----QG-KQFATFDNTSFDANS 156 (241)
Q Consensus 116 ~~l~~l~~L~~L~l~~N~l~g~~p----~~-~~~~~l~~~~~~~n~ 156 (241)
..+...++|+.|++++|.++..-. .. ...+++..+++++|+
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 445566788888888888763211 00 123566777777775
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=6.1e-10 Score=96.33 Aligned_cols=86 Identities=21% Similarity=0.253 Sum_probs=53.8
Q ss_pred cCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCC----Cchh
Q 026255 50 DILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGR----IPQQ 117 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 117 (241)
+.|++|+|++|.|+.. ++..+...++|++|+|++|.++.. ++..+...++|+.|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 5677777777777542 333445667777777777776532 234455566777777777777632 2233
Q ss_pred HhhccccceEeccCCccc
Q 026255 118 LVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 118 l~~l~~L~~L~l~~N~l~ 135 (241)
+...++|++|++++|.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 444567777777777765
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=1.9e-08 Score=82.92 Aligned_cols=78 Identities=24% Similarity=0.303 Sum_probs=58.3
Q ss_pred CcCccEEEccCCCCCc--cchhhhcCCCCCceEecccCcCCCCCccccCCCC--ccceeeccCCcCCCCCch-------h
Q 026255 49 PDILTGIILSNNRFDE--AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT--NLESLDLSNNKFSGRIPQ-------Q 117 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~ 117 (241)
+++|+.|+|++|.|++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5678999999999987 3446677888999999999998854 2233333 888999999998866652 3
Q ss_pred HhhccccceEe
Q 026255 118 LVELTFLEFFN 128 (241)
Q Consensus 118 l~~l~~L~~L~ 128 (241)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56778888775
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=4.9e-07 Score=76.36 Aligned_cols=103 Identities=13% Similarity=-0.024 Sum_probs=82.8
Q ss_pred CccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCc-eEecccCcCC
Q 026255 9 LRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQ-VLNLHNNNLQ 87 (241)
Q Consensus 9 l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~-~L~Ls~N~l~ 87 (241)
++.|+.++++.|+++..... -..-+.+|+.|+|++| +..+.+..|.++.+|+ .+++.+ .++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~----------------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF----------------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT----------------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred cCCCeEEECCCCCcceecHh----------------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 45666777777666633321 1223678999999998 8888888999999999 999999 777
Q ss_pred CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255 88 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129 (241)
Q Consensus 88 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 129 (241)
...+..|.++++|+.++++.|+++...+..|.++++|+.++.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 677789999999999999999999666678999999998863
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=6.8e-08 Score=75.17 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=42.7
Q ss_pred cCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeec--cCCcCCCC----Cc
Q 026255 50 DILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDL--SNNKFSGR----IP 115 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p 115 (241)
+.|++|+|++|.|... +...+...+.|++|+|++|.+... +...+...++|++|++ ++|.++.. +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3456666666665431 222333445566666666665532 2334444555666666 55655532 12
Q ss_pred hhHhhccccceEeccCCcc
Q 026255 116 QQLVELTFLEFFNVSDNYL 134 (241)
Q Consensus 116 ~~l~~l~~L~~L~l~~N~l 134 (241)
..+...++|++|++++|.+
T Consensus 145 ~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCcCEEeccCCCC
Confidence 2333345566666666554
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.11 E-value=7.8e-07 Score=80.59 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=28.7
Q ss_pred CCCCceEecccCcCCC-CCccccCCCCccceeeccCCcCCCC-CchhHhhccccceEeccCCccc
Q 026255 73 LKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 73 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~ 135 (241)
+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4445555555555443 1223334445555555555554322 2222334455555555555544
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=1.7e-06 Score=67.17 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=66.8
Q ss_pred CcCccEEEccCC-CCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCC----Cc
Q 026255 49 PDILTGIILSNN-RFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGR----IP 115 (241)
Q Consensus 49 ~~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p 115 (241)
.+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 567999999999 88642 345566778999999999998743 334455567899999999999843 34
Q ss_pred hhHhhccccceEec--cCCccc
Q 026255 116 QQLVELTFLEFFNV--SDNYLT 135 (241)
Q Consensus 116 ~~l~~l~~L~~L~l--~~N~l~ 135 (241)
..+...++|++|++ ++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHhCCCceEEEecCCCCCCC
Confidence 45566778999999 788886
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.99 E-value=1.5e-06 Score=78.80 Aligned_cols=60 Identities=12% Similarity=-0.048 Sum_probs=31.8
Q ss_pred ccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC--CCccCccCccccc
Q 026255 93 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFD 153 (241)
Q Consensus 93 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~ 153 (241)
.+..+++|+.++++++... .+|..+..+++|++|++++|.+++.... ...++.+..+++.
T Consensus 265 ~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 3444455555555554332 5566666777777788777775432211 1233445555544
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=3.7e-06 Score=64.73 Aligned_cols=83 Identities=11% Similarity=0.100 Sum_probs=62.9
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCc-CCCCCccccCCC----CccceeeccCCc-CCCCCchhHhhcccc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNL----TNLESLDLSNNK-FSGRIPQQLVELTFL 124 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 124 (241)
.|+.||++++.|+..--..+..+++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58999999999876555567889999999999985 654333445554 479999999985 774433456778999
Q ss_pred ceEeccCCc
Q 026255 125 EFFNVSDNY 133 (241)
Q Consensus 125 ~~L~l~~N~ 133 (241)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999874
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.86 E-value=1.1e-06 Score=79.63 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred hcCCCCCceEecccCcCCCCCccccCC-CCccceeeccCCcCCCCCchhH-hhccccceEeccCCcccCCCCC--CCccC
Q 026255 70 ISNLKGLQVLNLHNNNLQGHIPSCLGN-LTNLESLDLSNNKFSGRIPQQL-VELTFLEFFNVSDNYLTGPIPQ--GKQFA 145 (241)
Q Consensus 70 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~g~~p~--~~~~~ 145 (241)
+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ...++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455555555544 344333333333 5667777777777764444333 4567777777777776432111 12345
Q ss_pred ccCcccccCCCC
Q 026255 146 TFDNTSFDANSG 157 (241)
Q Consensus 146 ~l~~~~~~~n~~ 157 (241)
.+..+++.+|+.
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 666667766653
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.85 E-value=3.3e-06 Score=76.43 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=66.0
Q ss_pred CcCccEEEccCCCCCccchhhhcC-CCCCceEecccCcCCCCCcccc-CCCCccceeeccCCcCCCCCch-hHhhccccc
Q 026255 49 PDILTGIILSNNRFDEAIPASISN-LKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLDLSNNKFSGRIPQ-QLVELTFLE 125 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~ 125 (241)
+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... .+..+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 56788888876 666655555555 8999999999999876555544 5689999999999999644333 344589999
Q ss_pred eEeccCCccc
Q 026255 126 FFNVSDNYLT 135 (241)
Q Consensus 126 ~L~l~~N~l~ 135 (241)
.|++++|+++
T Consensus 510 ~L~l~~~~~~ 519 (594)
T 2p1m_B 510 SLWMSSCSVS 519 (594)
T ss_dssp EEEEESSCCB
T ss_pred EEeeeCCCCC
Confidence 9999999874
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.74 E-value=5.7e-05 Score=65.65 Aligned_cols=123 Identities=12% Similarity=0.048 Sum_probs=56.9
Q ss_pred CCCCCccccccccCCCCccccccccee----EEEEEee--cccccccCccCcCccEEEccCCCCCccchhhhcCCCCCce
Q 026255 5 NTSELRYLQDVLFPYGQVSSNVLGTYD----YSMTMNS--KGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQV 78 (241)
Q Consensus 5 ~~~~l~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 78 (241)
.+.++++|+.++++.|.++......+. ..+.+.. +.+...-..-+.+|+.+++..| +..+....|.+ .+|+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 345566666777777666554332221 1111110 0000000112445666666543 33333344444 44555
Q ss_pred EecccCcCCCCCccccCCCCccceeeccCCcCC-----CCCchhHhhccccceEecc
Q 026255 79 LNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS-----GRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 79 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~l~ 130 (241)
+.+ .+.++......|.++++|+.+++.+|.+. ...+..|..+++|+.+++.
T Consensus 253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 555 23344334455556666666666555543 1233445556666666655
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.63 E-value=6.5e-05 Score=54.83 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=32.9
Q ss_pred EEEccCCCCC-ccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCC
Q 026255 54 GIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111 (241)
Q Consensus 54 ~L~L~~n~i~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 111 (241)
.++.++++++ ..+|..+. .+|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666665 12443221 35666777777776444455666667777777777664
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.54 E-value=0.00011 Score=63.79 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=73.9
Q ss_pred cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCC-----CCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255 50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ-----GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124 (241)
Q Consensus 50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 124 (241)
.+|+.+.+ .+.+..+....|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++..-...|.++.+|
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 56888888 45577767788899999999999888765 35566788899999999984 5764555678888999
Q ss_pred ceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255 125 EFFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156 (241)
Q Consensus 125 ~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~ 156 (241)
+.+++..| ++..-+....-..+..+.+.+|.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~ 356 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNTGIKEVKVEGTT 356 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSSCCCEEEECCSS
T ss_pred cEEEECcc-ccEEcHHhCCCCCCCEEEEcCCC
Confidence 99999665 44222222111266677777763
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.53 E-value=2.1e-05 Score=67.54 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=19.2
Q ss_pred CCccceeeccCCcCCCCCchhHh---hccccceEeccCCccc
Q 026255 97 LTNLESLDLSNNKFSGRIPQQLV---ELTFLEFFNVSDNYLT 135 (241)
Q Consensus 97 l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~l~~N~l~ 135 (241)
+++|+.|++.+|.++...+..+. .+++|++|+++.|.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 45555555555555432222222 2455555555555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.46 E-value=3.5e-05 Score=66.13 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=38.8
Q ss_pred CCCCCceEecccCcCCCCCcccc---CCCCccceeeccCCcCCCC----CchhHhhccccceEeccCCccc
Q 026255 72 NLKGLQVLNLHNNNLQGHIPSCL---GNLTNLESLDLSNNKFSGR----IPQQLVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 72 ~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 135 (241)
.+++|+.|+|++|.+....+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35667777776666653222222 2466777777777777642 2333455677777777777665
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00034 Score=50.92 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=18.5
Q ss_pred ccceeeccCCcCCCCCchhHhhccccceEeccCCccc
Q 026255 99 NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135 (241)
Q Consensus 99 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 135 (241)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555555333334445555555555555443
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.41 E-value=0.0081 Score=51.54 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=44.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
..+|+.+.+..+ +..+-...|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..| ++..-..+|.++.+|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 445666665443 44444455666666666666533 44333455666666666666554 4433344566666666666
Q ss_pred ccC
Q 026255 129 VSD 131 (241)
Q Consensus 129 l~~ 131 (241)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.34 E-value=0.018 Score=49.33 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
...|+.+.+. +.+..+....|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++.+|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 4556666664 3455555556677777777777654 44344456667777777777544 4433345667777777777
Q ss_pred ccCCc
Q 026255 129 VSDNY 133 (241)
Q Consensus 129 l~~N~ 133 (241)
+.++.
T Consensus 364 ~~~~~ 368 (394)
T 4gt6_A 364 YSGSR 368 (394)
T ss_dssp ESSCH
T ss_pred ECCce
Confidence 76653
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.31 E-value=0.0017 Score=50.65 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=52.9
Q ss_pred CcCccEEEccCC-CCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCCch---
Q 026255 49 PDILTGIILSNN-RFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQ--- 116 (241)
Q Consensus 49 ~~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~--- 116 (241)
-+.|+.|+|++| .|... +-..+..-+.|+.|+|++|.+... +...+..-..|+.|+|++|.|+..--.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 346888888885 77431 334456667888888888888632 222333446788888888888742222
Q ss_pred -hHhhccccceEeccCC
Q 026255 117 -QLVELTFLEFFNVSDN 132 (241)
Q Consensus 117 -~l~~l~~L~~L~l~~N 132 (241)
.+..-..|+.|++++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 2333456777777754
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.13 E-value=0.008 Score=51.13 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=25.0
Q ss_pred hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
..|..+.+|+.+.+.++.++..-...|.++.+|+.+++..+ ++..-..+|.++.+|+.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 33444444444444444444233334444444444444332 2212223344444444443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.96 E-value=0.0034 Score=48.08 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=56.8
Q ss_pred CCCceEecccCcCCCCCccccCCCCccceeeccCCc-CCCCCchhHhhc----cccceEeccCCc-ccCC-CCCCCccCc
Q 026255 74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK-FSGRIPQQLVEL----TFLEFFNVSDNY-LTGP-IPQGKQFAT 146 (241)
Q Consensus 74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~l~~N~-l~g~-~p~~~~~~~ 146 (241)
..|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+ ++|++|+++++. ++.. +.....++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999887666678899999999999996 663322334442 479999999984 6521 000123456
Q ss_pred cCcccccCCC
Q 026255 147 FDNTSFDANS 156 (241)
Q Consensus 147 l~~~~~~~n~ 156 (241)
+..+++.+-+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666665543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.69 E-value=0.0064 Score=47.40 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=60.6
Q ss_pred CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcC---CCC----
Q 026255 49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKF---SGR---- 113 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l---~~~---- 113 (241)
-+.|+.|+|++|.|... +...+..-+.|+.|+|++|.|... +-..+..-..|+.|+|++|.. ...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 45799999999999642 334455568899999999999743 233455567799999987643 321
Q ss_pred CchhHhhccccceEeccCCcc
Q 026255 114 IPQQLVELTFLEFFNVSDNYL 134 (241)
Q Consensus 114 ~p~~l~~l~~L~~L~l~~N~l 134 (241)
+.+.+..-++|+.|+++.|..
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 233455567899999887754
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.32 E-value=0.016 Score=49.70 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=55.9
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 128 (241)
+.+|+.++|..+ ++.+-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++.++... -..+..+..|+.+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLP 384 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEE
Confidence 678999999865 66666788999999999999765 66455678999999999999987643 13455667788777
Q ss_pred ccCCcc
Q 026255 129 VSDNYL 134 (241)
Q Consensus 129 l~~N~l 134 (241)
+..|.+
T Consensus 385 i~~~~~ 390 (394)
T 4gt6_A 385 VAPGSI 390 (394)
T ss_dssp ------
T ss_pred eCCCCE
Confidence 766543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.05 E-value=0.019 Score=49.16 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=58.5
Q ss_pred CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255 49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127 (241)
Q Consensus 49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 127 (241)
+.+|+.+++..+ ++.+-...|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 678999999754 77766788999999999999877 76566678999999999999765 33 344567777777654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.12 E-value=0.084 Score=44.68 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=44.5
Q ss_pred CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255 51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130 (241)
Q Consensus 51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 130 (241)
.|+.+.+..+ +..+-...|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++..-...|.++.+|+.+++.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3444444433 33333444555556666665433 332333456666777777777766664444566677777777765
Q ss_pred CC
Q 026255 131 DN 132 (241)
Q Consensus 131 ~N 132 (241)
.+
T Consensus 319 ~~ 320 (379)
T 4h09_A 319 TA 320 (379)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=80.42 E-value=0.67 Score=26.51 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=11.7
Q ss_pred ceeEeehhhhhhhHHHHHHHHH
Q 026255 193 WKIILTGYAGGLVAGLVLGFNF 214 (241)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~ 214 (241)
...++.|+++|+++.+++++++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~ 30 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTF 30 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEeehHHHHHHHHHHHHH
Confidence 3445556666665555554433
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=68.12 E-value=3.6 Score=22.63 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=6.1
Q ss_pred hhhhhhHHHHHHHH
Q 026255 200 YAGGLVAGLVLGFN 213 (241)
Q Consensus 200 ~~~~~~~~~~~~~~ 213 (241)
.+.+++++++++++
T Consensus 12 aIAGiVvG~v~gv~ 25 (38)
T 2k1k_A 12 EIVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHH
Confidence 33444444444433
No 167
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.48 E-value=12 Score=24.18 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=10.9
Q ss_pred eeEeehhhhhhhHHHHHHHHHhh
Q 026255 194 KIILTGYAGGLVAGLVLGFNFST 216 (241)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~ 216 (241)
..+++|+++++++..+++++++.
T Consensus 11 ~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555655444444444433
No 168
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=45.86 E-value=28 Score=19.52 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=3.1
Q ss_pred hhhhHHHH
Q 026255 202 GGLVAGLV 209 (241)
Q Consensus 202 ~~~~~~~~ 209 (241)
.+++++++
T Consensus 14 ~gvi~~iv 21 (43)
T 2k9j_B 14 LSVMGAIL 21 (43)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444333
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.57 E-value=41 Score=22.39 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=20.4
Q ss_pred ccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccC
Q 026255 91 PSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSD 131 (241)
Q Consensus 91 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 131 (241)
...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555443 2223334566666666666554
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.99 E-value=50 Score=21.92 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=28.2
Q ss_pred CCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccC
Q 026255 61 RFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107 (241)
Q Consensus 61 ~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 107 (241)
.++.+-...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444556667777777777654 3334455677777777776654
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=24.97 E-value=65 Score=17.03 Aligned_cols=8 Identities=63% Similarity=0.991 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 026255 205 VAGLVLGF 212 (241)
Q Consensus 205 ~~~~~~~~ 212 (241)
++++++++
T Consensus 13 i~gl~vif 20 (40)
T 2l9u_A 13 IAGLVVIF 20 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 172
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.97 E-value=86 Score=15.58 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=5.1
Q ss_pred hhHHHHHHh
Q 026255 218 IIGWILEKL 226 (241)
Q Consensus 218 ~~~w~~~~~ 226 (241)
...|..++.
T Consensus 21 fgfwlfkyl 29 (32)
T 2lx0_A 21 FGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455666655
No 173
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=20.31 E-value=49 Score=15.84 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=9.1
Q ss_pred hhhHHHHHHhhh
Q 026255 217 GIIGWILEKLGM 228 (241)
Q Consensus 217 ~~~~w~~~~~~~ 228 (241)
.++.||+.++.+
T Consensus 10 iwrawyiqyve~ 21 (26)
T 4gnt_B 10 IWRAWYIQYVQR 21 (26)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH
Confidence 467899998754
Done!