RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026256
(241 letters)
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 170 bits (433), Expect = 7e-53
Identities = 56/100 (56%), Positives = 74/100 (74%), Gaps = 5/100 (5%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR +GR+ A+VL+ +KPG+TT E+D+ H+ I ++GAYP+PLGY GFPKS+CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFWG 215
SVNE +CHGIPD R L+DGD +NIDV V L+ G+ G
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELD-----GYHG 95
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 164 bits (418), Expect = 2e-50
Identities = 54/97 (55%), Positives = 71/97 (73%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ + IE MRV+GRLAA+VL+ VKPG+TT E+D+ + I D GA P+PLGY GF
Sbjct: 5 IKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHGF 64
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLN 206
PKS+CTSVNE +CHGIP + L++GD +NIDVTV +
Sbjct: 65 PKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKD 101
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 163 bits (414), Expect = 2e-48
Identities = 74/142 (52%), Positives = 91/142 (64%), Gaps = 15/142 (10%)
Query: 75 LRPGKVSPHRPVPDHIPRP-------PYV--NS-QKPIGIVSGPEVHDEKGIECMRVSGR 124
LRP +SP R VPDHIP+P P + NS + + PE I+ MR + R
Sbjct: 97 LRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPE-----QIQRMRETCR 151
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHG 184
+A +VL+ A +KPG+TTDEID+ VH+ I G YPSPL Y FPKS CTSVNE ICHG
Sbjct: 152 IAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHG 211
Query: 185 IPDSRALEDGDTINIDVTVYLN 206
IPD+R LEDGD +N+DVTVY
Sbjct: 212 IPDARKLEDGDIVNVDVTVYYK 233
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 151 bits (385), Expect = 2e-45
Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 6/120 (5%)
Query: 106 SGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLG 165
G E+ + +E MR GR+ A L+ G V+PG+TT E+D+ + + ++GA PSP G
Sbjct: 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEG 65
Query: 166 YGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFWGASG-SLPLPP 224
Y GFP S C SVNE + HGIP R ++DGD +NIDV+ YL+ G+ G +G + + P
Sbjct: 66 YYGFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLD-----GYHGDTGITFAVGP 120
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 145 bits (367), Expect = 9e-43
Identities = 44/99 (44%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ + IE MR +G++AA+ L+ +LVKPG+TT E+D+ + I + GAYP+ LGY G
Sbjct: 4 SIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKG 63
Query: 169 FPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLN 206
FP C SVNE + HGIP D + L++GD + IDV +++
Sbjct: 64 FPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHID 102
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 133 bits (337), Expect = 2e-38
Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE +R +GRLAA+VLE VKPG++T E+D+ I +GA P+ LGY GFP SVC
Sbjct: 9 IEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCI 68
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFWGASG 218
SVNE + HGIPD + L+DGD +NIDV V + G+ G +
Sbjct: 69 SVNEVVIHGIPDKKVLKDGDIVNIDVGVIYD-----GYHGDTA 106
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 97.2 bits (242), Expect = 3e-24
Identities = 40/108 (37%), Positives = 69/108 (63%), Gaps = 7/108 (6%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG- 168
+ + IE +R + ++ A++L+ K G+TT+E+D+ ++ + A P+PL YG
Sbjct: 43 IKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYGSP 102
Query: 169 -FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFWG 215
FPK++CTS+NE ICHGIP+ L++GD +NIDV+ ++ G++G
Sbjct: 103 PFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVD-----GYYG 145
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 93.5 bits (233), Expect = 2e-23
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQ-MIIDNGAYPSPLGYGGFPKSVCT 175
E MR + R+AA LE A ++PG+T E+ + + GA FP V +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA-----RGPAFPPIVAS 55
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLN 206
N + H IP R L+DGD + IDV +
Sbjct: 56 GPNAAVPHYIPSDRVLKDGDLVLIDVGAEYD 86
Score = 38.4 bits (90), Expect = 0.001
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 124 RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNG---AYPSPLGYGGFPKSVCTSVNEC 180
+ E A VKPG+T ++D A +++ + G +P LG+G + V++
Sbjct: 110 EAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHG-----IGLDVHDE 164
Query: 181 --ICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFWGASG 218
+ R LE G IEPG + G
Sbjct: 165 GPYISRGGNDRVLEPGMVFT----------IEPGIYFIPG 194
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 82.4 bits (203), Expect = 7e-19
Identities = 37/99 (37%), Positives = 53/99 (53%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I+ M SG+L A ++KPGITT EI+ V + +GA GY G+P ++C
Sbjct: 10 IDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICA 69
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFW 214
SVN+ +CH P L +GD + ID+ V LN + W
Sbjct: 70 SVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAW 108
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 69.8 bits (171), Expect = 1e-14
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I +R + +A + A ++PG+T E+ A+ Q + G YP
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP--------AGPTIV 52
Query: 176 SVNE--CICHGIPDSRALEDGDTINIDVTVYLN 206
+ H PD R L++GD + +D+ +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYD 85
Score = 40.9 bits (96), Expect = 2e-04
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 124 RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP---LGYGGFPKSVCTSVNEC 180
+ E A ++PG+T +E+D A +++ ++G P+ G+G + ++E
Sbjct: 109 EAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHG-----IGLEIHEP 163
Query: 181 ICHGIPDSRALEDGDTINIDVTVYL 205
D LE G ++ +YL
Sbjct: 164 PVLKAGDDTVLEPGMVFAVEPGLYL 188
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 62.1 bits (151), Expect = 3e-11
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ I +R + +A LE A ++PG+T EI + + GA F
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGA-----EGPSF 208
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDV 201
V + N + H P R L DGD + ID+
Sbjct: 209 DTIVASGENAALPHYTPSDRKLRDGDLVLIDL 240
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 59.2 bits (144), Expect = 2e-10
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E R +G + QV +YA +L+KPG+T EI + V I + GA P FP ++
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGP------AFPVNL-- 52
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTVYLN 206
S+NEC H P D L++GD + +D +++
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVD 86
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 56.7 bits (138), Expect = 1e-09
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
+E +G++A++V E A L+KPG ++ + V I + GA P+ FP
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 176 SVNECICHGIP---DSRALEDGDTINIDVTV 203
S+NE H P D R +GD + +D+
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGA 84
Score = 27.5 bits (62), Expect = 7.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 126 AAQVLEYAGTLVKPGITTDEIDKAVHQMI 154
+ + LE A +V+PG++ EI + + + I
Sbjct: 110 SEEALEAAIEVVRPGVSVGEIGRVIEETI 138
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 52.9 bits (128), Expect = 1e-08
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY-PSPLGYGGFPKSVC 174
IE +R + R+A + E +KPG+T E+ + + GA PS F V
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 175 TSVNECICHGIPDSRALEDGDTINIDVTVYLN 206
+ N + HG+P R +E+GD + ID +
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYD 86
Score = 27.5 bits (62), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 137 VKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
VKPG+T E+DKA +I + GYG +
Sbjct: 123 VKPGVTAKEVDKAARDVIEEA-------GYGEY 148
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 49.8 bits (119), Expect = 3e-07
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
D + E +G++ ++V A + PG+ E+ + V I + GA P FP
Sbjct: 1 DIERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEP------AFPC 54
Query: 172 SVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNQMI 209
++ S+NEC H P D +DGD + +D+ +++ I
Sbjct: 55 NI--SINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYI 93
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 46.0 bits (109), Expect = 6e-06
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG----FPK 171
IE M +G A + L+KPG+ E+++ V + + P +G G +P
Sbjct: 10 IEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPY 69
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTV 203
+ C +N+ + H P L++GD + +D+ +
Sbjct: 70 ATCCGLNDEVAHAFPRHYILKEGDLLKVDMVL 101
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 41.6 bits (98), Expect = 2e-04
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 113 EKGIECMRVSGRLAAQVLEYAGTLVKPGIT----TDEIDKAVHQMIIDNGAYPSPLGYG- 167
E+ + +R + + QV YA +++KPG+ + I+ ++I +G L G
Sbjct: 155 EEQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRELIEADG-----LKCGW 209
Query: 168 GFPKSVCTSVNECICHGIP---DSRALEDGDTINIDVTVYLNQMI 209
FP S+N C H P D L D +D ++N I
Sbjct: 210 AFPTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRI 252
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 38.9 bits (91), Expect = 0.001
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 29/104 (27%)
Query: 120 RVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMI---------IDNG-AYPSPLG 165
+ +G++A +VL+ +L PG ++ DK + + + ++ G A+P
Sbjct: 5 KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFP---- 60
Query: 166 YGGFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYL 205
C SVN C+CH P + L+DGD + ID+ ++
Sbjct: 61 -------TCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHI 97
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 37.2 bits (86), Expect = 0.006
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 169 FPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNQMI 209
FP C SVN C+ H P L++GD + ID+ +++ I
Sbjct: 77 FP--TCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFI 119
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 33.9 bits (78), Expect = 0.071
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 108 PEVHD------EKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-Y 160
P VH+ + I +R +G ++A A +PG+ +++ +H +GA Y
Sbjct: 165 PWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARY 224
Query: 161 PSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINID 200
PS + V + N CI H + + DGD + ID
Sbjct: 225 PS------YNTIVGSGENGCILHYTENESEMRDGDLVLID 258
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 31.4 bits (72), Expect = 0.28
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE MR + ++A+ A +PG++ E++ GA Y V
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARL-AYSYI-----VAA 54
Query: 176 SVNECICHGIPDSRALEDGDTINID 200
N I H + + + L+DGD + ID
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLID 79
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 30.1 bits (69), Expect = 1.1
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 20/48 (41%)
Query: 185 IPDSRALEDGDTINIDVTVYL-------------------NQMIEPGF 213
+P R E+GD + ID + + I PGF
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDGEEFEGGKAEDFSLELGSGRFI-PGF 198
>gnl|CDD|239764 cd04097, mtEFG1_C, mtEFG1_C: C-terminus of mitochondrial
Elongation factor G1 (mtEFG1)-like proteins found in
eukaryotes. Eukaryotic cells harbor 2 protein
synthesis systems: one localized in the cytoplasm, the
other in the mitochondria. Most factors regulating
mitochondrial protein synthesis are encoded by nuclear
genes, translated in the cytoplasm, and then
transported to the mitochondria. The eukaryotic system
of elongation factor (EF) components is more complex
than that in prokaryotes, with both cytoplasmic and
mitochondrial elongation factors and multiple isoforms
being expressed in certain species. Eukaryotic EF-2
operates in the cytosolic protein synthesis machinery
of eukaryotes, EF-Gs in protein synthesis in bacteria.
Eukaryotic mtEFG1 proteins show significant homology to
bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired
mitochondrial protein synthesis, respiratory defects
and a tendency to lose mitochondrial DNA. There are two
forms of mtEFG present in mammals (designated mtEFG1s
and mtEFG2s) mtEFG2s are not present in this group.
Length = 78
Score = 28.1 bits (63), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 29 PLNQLFGYNS-------GKNQVSMQLSR 49
PLN +FGY++ GK + SM+ SR
Sbjct: 46 PLNDMFGYSTELRSMTQGKGEFSMEFSR 73
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 29.7 bits (67), Expect = 1.3
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 177
V ++IDNG+ + G+ G P +V S+
Sbjct: 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSI 35
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein
LanM. Members of this family are known generally as
LanM, a multifunctional enzyme of lantibiotic
biosynthesis. This catalysis by LanM distinguishes the
type 2 lantibiotics, such as mersacidin, cinnamycin, and
lichenicidin, from LanBC-produced type 1 lantibiotics
such as nisin and subtilin. The N-terminal domain
contains regions associated with Ser and Thr
dehydration. The C-terminal region contains a pfam05147
domain, which catalyzes the formation of the lanthionine
bridge [Cellular processes, Toxin production and
resistance].
Length = 931
Score = 29.5 bits (67), Expect = 1.6
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 182 CHGIP-------DSRALEDGDTINIDVTVYLNQMIEPGFWG 215
CHG P + D D I+ D+ + L ++ GF
Sbjct: 813 CHGAPGILLSRLGLLEILDDDEIDEDIEIALETTLKLGFGD 853
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 27.3 bits (61), Expect = 2.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 65 DAEPNRRRKRLRPGKVSPHRPVPDHIPR 92
E R RPG+ +P+P+H+PR
Sbjct: 51 APEQPAAPPRRRPGR----KPLPEHLPR 74
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 28.7 bits (64), Expect = 2.8
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 7 SLQLQPRLLSSFVGNRFIHSTQPLNQLFGYNS-GKNQVSMQLSRTFSGLADLLFNRRNLD 65
L L + ++ + I PL G NS GK+ L +SGL R
Sbjct: 2 ILSLSLKNFKPYINGKIILK--PLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLAC 59
Query: 66 AEPNRRRK 73
AE +R +K
Sbjct: 60 AEYSRNKK 67
>gnl|CDD|223490 COG0413, PanB, Ketopantoate hydroxymethyltransferase [Coenzyme
metabolism].
Length = 268
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEI 146
D+ G++ + V L VL Y TL +T +++
Sbjct: 32 DQAGVDVLLVGDSLGMVVLGYDSTL---PVTLEDM 63
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional.
Length = 472
Score = 28.6 bits (64), Expect = 3.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 63 NLDAEPNRRRKRLRPGKVSPHRP 85
LD +P RR+ RP K +P R
Sbjct: 447 ELDDDPAPRRRTRRPRKRAPRRE 469
>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase.
This enzyme represents one of at least two mechanisms
for reclaiming CoA from butyryl-CoA at the end of
butyrate biosynthesis (an important process performed by
some colonic bacteria), namely transfer of CoA to
acetate. An alternate mechanism transfers the butyrate
onto inorganic phosphate, after which butyrate kinase
transfers the phosphate onto ADP, creating ATP [Energy
metabolism, Fermentation].
Length = 445
Score = 28.3 bits (63), Expect = 3.8
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 145 EIDKAVHQMIID---NGAYPSPLGYGGFPKSVCTSVNE 179
E+DKAV ++I++ NGA LG GG P +V + + E
Sbjct: 197 EVDKAVAKLIVEEIPNGACLQ-LGIGGMPNAVGSLIAE 233
>gnl|CDD|216724 pfam01824, MatK_N, MatK/TrnK amino terminal region. The function
of this region is unknown.
Length = 331
Score = 28.2 bits (63), Expect = 3.9
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 21 NRFIHSTQPLNQ--LFGYNSGKNQVSMQLSRTFSGLADLLFNRRNLDAEPNRRRKR---L 75
N FI S NQ G+N KN S +S F+ + ++ F+ R + + + + L
Sbjct: 68 NHFIISVNDSNQNPFLGHN--KNLYSQMISEGFAVIVEIPFSLRLISSLEGKEIVKSHNL 125
Query: 76 RPGKVSPHRPVP 87
R S H P
Sbjct: 126 R----SIHSIFP 133
>gnl|CDD|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family.
This family consists of taurine catabolism dioxygenases
of the TauD, TfdA family. TauD from E. coli is a
alpha-ketoglutarate-dependent taurine dioxygenase. This
enzyme catalyzes the oxygenolytic release of sulfite
from taurine. TfdA from Burkholderia sp. is a
2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate
dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a
2,4-dichlorophenoxyacetate monooxygenase. Also included
are gamma-Butyrobetaine hydroxylase enzymes
EC:1.14.11.1.
Length = 215
Score = 27.3 bits (61), Expect = 5.9
Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 1 MVGGACSLQLQPRLLSSFVGNRFIHSTQPLNQLFGY-NSGKNQVSMQLSRTFSGLADLLF 59
V G L P + VG S L+ L + + + G DL+
Sbjct: 136 PVTGRKVLFNNPHFTTRIVGLPLAESQALLDALDAHLTDPEFTYRHKWQP---G--DLVI 190
Query: 60 --NRRNL-----DAEPNRRR 72
NRR L RR
Sbjct: 191 WDNRRVLHGRTAFDPTGRRH 210
>gnl|CDD|235947 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
Validated.
Length = 342
Score = 27.2 bits (61), Expect = 8.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 125 LAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAY 160
L + L + T ++ G ++D V+ I +N Y
Sbjct: 149 LKNKNLNISSTKIRKGNLLGKLDPKVNDYINENFLY 184
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 27.5 bits (61), Expect = 9.4
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
Query: 12 PRLLSSFVGNRFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLADLLFNRRNLDAEPNRR 71
P+ L RFI +T +LF + +++ + L+ LAD+ N P
Sbjct: 436 PKFLDGSYDTRFIDTTP---ELFQFVKSQDRATKLLTY----LADVTVN-----GHP-EA 482
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPE-----VHDEKGIECMRVSGRLA 126
+ +L+P + +P V + + P K I GPE V ++K + + R A
Sbjct: 483 KDKLKPLENAPRVVVL-YADQNPVPRGTKQILDEKGPEGFAEWVRNQKRVLLTDTTFRDA 541
Query: 127 AQVL 130
Q L
Sbjct: 542 HQSL 545
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.433
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,579,483
Number of extensions: 1195513
Number of successful extensions: 1072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 42
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)