RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026256
(241 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 97.3 bits (241), Expect = 5e-25
Identities = 52/123 (42%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYG 167
+ + IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY
Sbjct: 2 SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYH 61
Query: 168 GFPKSVCTSVNECICHGIP-DSRALEDGDTINIDVTVYLNQMIEPGFWGASGSLPLPPCN 226
G+PKSVC S+NE +CHGIP D++ L+DGD +NIDVTV + P
Sbjct: 62 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE 121
Query: 227 VLH 229
L
Sbjct: 122 RLC 124
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 82.3 bits (202), Expect = 3e-19
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ E+ R + QV +Y + +KPG+T EI + +
Sbjct: 50 DQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLA 109
Query: 169 FPKSVCTSVNECI-CHGIPDSRALEDGDTINIDVTVYLNQM 208
FP + D+ L+ D ID +++
Sbjct: 110 FPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGR 150
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 71.7 bits (174), Expect = 1e-15
Identities = 11/117 (9%), Positives = 30/117 (25%), Gaps = 1/117 (0%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSP-LGYGG 168
+ + +R R+A + + E+ Q ++ A +
Sbjct: 2 IKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMD 61
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFWGASGSLPLPPC 225
+ +N H +R + GD ++++ +
Sbjct: 62 TWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDH 118
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 71.0 bits (172), Expect = 2e-15
Identities = 35/105 (33%), Positives = 53/105 (50%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFW 214
P C SVNE + HGIP R + +GD +NIDV+ N
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGI 107
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 67.4 bits (163), Expect = 2e-14
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ +
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAA- 61
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFW 214
D+ L++GD + IDV V+++ I
Sbjct: 62 ----HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAV 96
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 63.1 bits (152), Expect = 1e-12
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
+ IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG
Sbjct: 3 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 62
Query: 169 FPKSVCTSVNECICHGIP 186
+ + C SVNE + HG+P
Sbjct: 63 YKYATCVSVNEEVVHGLP 80
Score = 29.2 bits (64), Expect = 0.42
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 128 QVLEYAGTLVKPGITTDEIDKAVHQMIIDNG--AYPSPLGYG-GFPKSVCTSVNECICHG 184
+VLE A ++KPGI ++ + + + G +G+G G + G
Sbjct: 129 EVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPG 188
Query: 185 IPDSRALEDGDTINIDVTVYL 205
L G T+ I+ V
Sbjct: 189 --TGVVLRKGMTLAIEPMVSE 207
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 61.6 bits (148), Expect = 5e-12
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGA-YPSPLGYGGFPKSVC 174
I +R +G + A A +PG+ ++ +H +GA YPS G ++ C
Sbjct: 5 IAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGC 64
Query: 175 TSVNECICHGIPD 187
+ D
Sbjct: 65 ILHYTENECEMRD 77
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 50.4 bits (119), Expect = 3e-08
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPK 171
++ IE + + +A + + A + G E+ V ++ NGA F
Sbjct: 2 TKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPA-----FDT 56
Query: 172 SVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNQMIEPGFWGASGSLPLPPCNVLH 229
+ + + HG+ + +E GD + ID+ N P ++
Sbjct: 57 IIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIY 114
>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 141
Score = 26.6 bits (59), Expect = 1.5
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 19 VGNRFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLAD 56
G R + + ++ YNS + + + ++T S D
Sbjct: 86 YGPRTVTPAM-VEGIYKYNSDRKRFTQIPAKTMSMSVD 122
>d1wpia1 c.47.1.18 (A:1-133) Hypothetical protein YKR049C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 133
Score = 25.7 bits (56), Expect = 3.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 7 SLQLQPRLLSSFVGN--RFIHSTQPLNQLFGYNSGKNQVSMQLSRTFSGLADLLF 59
+LQ QPR +S F + I S + L L G S + ++++ F L +
Sbjct: 6 TLQRQPRTISLFTNDIASNIKSQKCLQLLKGDVSHR--FDVEIANRFPTWDQLQY 58
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 26.1 bits (56), Expect = 3.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDN 157
R++ RL +V + + I TD + K + + ID+
Sbjct: 200 PRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 238
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 415
Score = 25.7 bits (55), Expect = 6.3
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 180 CICHGIPDSRALEDGDTINIDVTVYLNQMIEP 211
+ ++ ID YL +
Sbjct: 369 VKVRSKDGVKPVQLAKVTEIDAEKYLEALRST 400
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 24.6 bits (53), Expect = 8.1
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 154 IIDNGAYPSPLGYGG--FPKSVCTSV 177
++D G + LGY G P+ + S
Sbjct: 7 VVDCGTGYTKLGYAGNTEPQFIIPSC 32
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 24.7 bits (53), Expect = 9.2
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 153 MIIDNGAYPSPLGYGG--FPKSVCTSVNECICHGIPDSRALEDG 194
++ DNG+ G+ G P++V S G P + + G
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPS-----IVGRPRHQGVMVG 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.433
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 928,425
Number of extensions: 43482
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 18
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)