AmiGO: BLAST Results


BLAST match view associations BLAST with OsRPT4 OsRPT4 OsRPT4 26S proteasome regulatory particle triple-A ATPase subunit4	protein from Oryza sativa Japonica Group	1.4e-119
BLAST match view associations BLAST with AT1G45000 AT1G45000 AT1G45000	protein from Arabidopsis thaliana	2.0e-118
BLAST match view associations BLAST with RPT4A RPT4A RPT4A regulatory particle triple-A ATPase 4A	protein from Arabidopsis thaliana	2.6e-118
BLAST match view associations BLAST with Rpt4 Rpt4 Rpt4 Regulatory particle triple-A ATPase 4	protein from Drosophila melanogaster	1.3e-109
BLAST match view associations BLAST with Rpt4R Rpt4R Rpt4R Regulatory particle triple-A ATPase 4-related	protein from Drosophila melanogaster	1.7e-105
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	1.7e-105
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	1.7e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Sus scrofa	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Ictidomys tridecemlineatus	2.8e-105
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein from Mus musculus	2.8e-105
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene from Rattus norvegicus	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	9.5e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	9.5e-105
BLAST match view associations BLAST with psmC6 psmC6 psmC6 26S protease regulatory subunit S10B	gene from Dictyostelium discoideum	2.5e-104
BLAST match view associations BLAST with psmc6 psmc6 psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene_product from Danio rerio	4.1e-104
BLAST match view associations BLAST with RPT4 RPT4 RPT4	gene_product from Candida albicans	4.2e-95
BLAST match view associations BLAST with RPT4 RPT4 RPT4 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	7.0e-93
BLAST match view associations BLAST with PF13_0033 PF13_0033 PF13_0033 26S proteasome regulatory subunit, putative	gene from Plasmodium falciparum	5.0e-92
BLAST match view associations BLAST with PF13_0033 PF13_0033 PF13_0033 26S proteasome regulatory subunit, putative	protein from Plasmodium falciparum 3D7	5.0e-92
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Pongo abelii	5.6e-68
BLAST match view associations BLAST with Rpt1 Rpt1 Rpt1 Regulatory particle triple-A ATPase 1	protein from Drosophila melanogaster	7.2e-68
BLAST match view associations BLAST with rpt-1 rpt-1 rpt-1	gene from Caenorhabditis elegans	7.2e-68
BLAST match view associations BLAST with rpt-1 rpt-1 rpt-1 26S protease regulatory subunit 7	protein from Caenorhabditis elegans	7.2e-68
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Gallus gallus	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Gallus gallus	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Bos taurus	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Canis lupus familiaris	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Homo sapiens	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Homo sapiens	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Sus scrofa	1.5e-67
BLAST match view associations BLAST with I3LJ30 I3LJ30 I3LJ30 Uncharacterized protein	protein from Sus scrofa	1.5e-67
BLAST match view associations BLAST with psmc2 psmc2 psmc2 26S protease regulatory subunit 7	protein from Xenopus laevis	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Macaca fascicularis	1.5e-67
BLAST match view associations BLAST with Psmc2 Psmc2 Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2	protein from Mus musculus	1.5e-67
BLAST match view associations BLAST with psmc2 psmc2 psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2	gene_product from Danio rerio	1.5e-67
BLAST match view associations BLAST with Psmc2 Psmc2 Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2	gene from Rattus norvegicus	3.1e-67
BLAST match view associations BLAST with Psmc2 Psmc2 Psmc2 26S protease regulatory subunit 7	protein from Rattus norvegicus	3.1e-67
BLAST match view associations BLAST with RPT1A RPT1A RPT1A regulatory particle triple-A 1A	protein from Arabidopsis thaliana	5.1e-67
BLAST match view associations BLAST with RPT1 RPT1 RPT1	gene_product from Candida albicans	7.4e-66
BLAST match view associations BLAST with RPT1 RPT1 RPT1 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	2.0e-65
BLAST match view associations BLAST with psmC2 psmC2 psmC2 26S proteasome ATPase 2 subunit	gene from Dictyostelium discoideum	5.2e-65
BLAST match view associations BLAST with Rpt6 Rpt6 Rpt6 Regulatory particle triple-A ATPase 6	protein from Drosophila melanogaster	8.5e-65
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	1.8e-64
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	1.8e-64
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	1.8e-64
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	1.8e-64
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	1.8e-64
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Putative uncharacterized protein	protein from Xenopus laevis	1.8e-64
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Putative uncharacterized protein MGC75584	protein from Xenopus (Silurana) tropicalis	1.8e-64
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	1.8e-64
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	1.8e-64
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	1.8e-64
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	1.2e-63
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	1.2e-63
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	1.2e-63
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	1.6e-63
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	1.6e-63
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	1.6e-63
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	4.2e-63
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c tat-binding protein homolog	gene from Plasmodium falciparum	5.4e-63
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c Tat-binding protein homolog	protein from Plasmodium falciparum 3D7	5.4e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	6.9e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	6.9e-63
BLAST match view associations BLAST with psmc5 psmc5 psmc5 26S protease regulatory subunit 8	protein from Xenopus laevis	6.9e-63
BLAST match view associations BLAST with PF13_0063 PF13_0063 PF13_0063 26S proteasome regulatory subunit 7, putative	gene from Plasmodium falciparum	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Proteasome (Prosome, macropain) 26S subunit, ATPase, 1	protein from Bos taurus	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	8.8e-63
BLAST match view associations BLAST with PF13_0063 PF13_0063 PF13_0063 26S proteasome regulatory subunit 7, putative	protein from Plasmodium falciparum 3D7	8.8e-63
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	8.8e-63
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	8.8e-63
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	1.8e-62
BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	2.3e-62
BLAST match view associations BLAST with psmC5 psmC5 psmC5 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	3.0e-62
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	6.2e-62
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	7.9e-62
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	7.9e-62
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	1.0e-61
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	1.0e-61
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	1.3e-61
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	1.3e-61
BLAST match view associations BLAST with RPT6 RPT6 RPT6 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	2.4e-60
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	3.1e-60
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	gene from Plasmodium falciparum	5.0e-60
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	protein from Plasmodium falciparum 3D7	5.0e-60
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026258
        (241 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q9FXT8 - symbol:OsRPT4 "Os02g0199900 protein" s...  1177  1.4e-119  1
TAIR|locus:2028200 - symbol:AT1G45000 species:3702 "Arabi...  1166  2.0e-118  1
TAIR|locus:2159996 - symbol:RPT4A "regulatory particle tr...  1165  2.6e-118  1
FB|FBgn0028685 - symbol:Rpt4 "Regulatory particle triple-...  1083  1.3e-109  1
FB|FBgn0036224 - symbol:Rpt4R "Regulatory particle triple...  1044  1.7e-105  1
WB|WBGene00004504 - symbol:rpt-4 species:6239 "Caenorhabd...  1044  1.7e-105  1
UNIPROTKB|O17071 - symbol:rpt-4 "Probable 26S protease re...  1044  1.7e-105  1
UNIPROTKB|F1MLV1 - symbol:PSMC6 "26S protease regulatory ...  1042  2.8e-105  1
UNIPROTKB|Q2KIW6 - symbol:PSMC6 "26S protease regulatory ...  1042  2.8e-105  1
UNIPROTKB|J9P1N0 - symbol:PSMC6 "Uncharacterized protein"...  1042  2.8e-105  1
UNIPROTKB|P62333 - symbol:PSMC6 "26S protease regulatory ...  1042  2.8e-105  1
UNIPROTKB|F1SFE6 - symbol:PSMC6 "Uncharacterized protein"...  1042  2.8e-105  1
UNIPROTKB|P62335 - symbol:PSMC6 "26S protease regulatory ...  1042  2.8e-105  1
MGI|MGI:1914339 - symbol:Psmc6 "proteasome (prosome, macr...  1042  2.8e-105  1
RGD|1308825 - symbol:Psmc6 "proteasome (prosome, macropai...  1042  2.8e-105  1
RGD|2318218 - symbol:LOC100365869 "proteasome (prosome, m...  1042  2.8e-105  1
UNIPROTKB|F1NCS8 - symbol:PSMC6 "Uncharacterized protein"...  1037  9.5e-105  1
UNIPROTKB|Q5ZKX2 - symbol:PSMC6 "Uncharacterized protein"...  1037  9.5e-105  1
DICTYBASE|DDB_G0284517 - symbol:psmC6 "26S protease regul...  1033  2.5e-104  1
ZFIN|ZDB-GENE-030131-304 - symbol:psmc6 "proteasome (pros...  1031  4.1e-104  1
POMBASE|SPCC1682.16 - symbol:rpt4 "19S proteasome regulat...  1017  1.3e-102  1
ASPGD|ASPL0000032311 - symbol:AN5747 species:162425 "Emer...  1001  6.2e-101  1
CGD|CAL0005827 - symbol:RPT4 species:5476 "Candida albica...   946  4.2e-95   1
SGD|S000005785 - symbol:RPT4 "ATPase of the 19S regulator...   925  7.0e-93   1
GENEDB_PFALCIPARUM|PF13_0033 - symbol:PF13_0033 "26S prot...   917  5.0e-92   1
UNIPROTKB|Q8IEQ1 - symbol:PF13_0033 "26S proteasome regul...   917  5.0e-92   1
UNIPROTKB|Q5R8D7 - symbol:PSMC2 "26S protease regulatory ...   690  5.6e-68   1
FB|FBgn0028687 - symbol:Rpt1 "Regulatory particle triple-...   689  7.2e-68   1
WB|WBGene00004501 - symbol:rpt-1 species:6239 "Caenorhabd...   689  7.2e-68   1
UNIPROTKB|Q18787 - symbol:rpt-1 "26S protease regulatory ...   689  7.2e-68   1
UNIPROTKB|E1C4V5 - symbol:PSMC2 "Uncharacterized protein"...   686  1.5e-67   1
UNIPROTKB|F1NFL8 - symbol:PSMC2 "Uncharacterized protein"...   686  1.5e-67   1
UNIPROTKB|Q5E9F9 - symbol:PSMC2 "26S protease regulatory ...   686  1.5e-67   1
UNIPROTKB|F1PPH7 - symbol:PSMC2 "Uncharacterized protein"...   686  1.5e-67   1
UNIPROTKB|B7Z5E2 - symbol:PSMC2 "cDNA FLJ52353, highly si...   686  1.5e-67   1
UNIPROTKB|P35998 - symbol:PSMC2 "26S protease regulatory ...   686  1.5e-67   1
UNIPROTKB|F1SB53 - symbol:PSMC2 "Uncharacterized protein"...   686  1.5e-67   1
UNIPROTKB|I3LJ30 - symbol:I3LJ30 "Uncharacterized protein...   686  1.5e-67   1
UNIPROTKB|P46472 - symbol:psmc2 "26S protease regulatory ...   686  1.5e-67   1
UNIPROTKB|Q4R4R0 - symbol:PSMC2 "26S protease regulatory ...   686  1.5e-67   1
MGI|MGI:109555 - symbol:Psmc2 "proteasome (prosome, macro...   686  1.5e-67   1
ZFIN|ZDB-GENE-040426-1327 - symbol:psmc2 "proteasome (pro...   686  1.5e-67   1
RGD|3428 - symbol:Psmc2 "proteasome (prosome, macropain) ...   683  3.1e-67   1
UNIPROTKB|Q63347 - symbol:Psmc2 "26S protease regulatory ...   683  3.1e-67   1
TAIR|locus:2024822 - symbol:RPT1A "regulatory particle tr...   681  5.1e-67   1
ASPGD|ASPL0000034636 - symbol:AN2917 species:162425 "Emer...   677  1.3e-66   1
CGD|CAL0005689 - symbol:RPT1 species:5476 "Candida albica...   670  7.4e-66   1
POMBASE|SPBC16C6.07c - symbol:rpt1 "19S proteasome regula...   666  2.0e-65   1
SGD|S000001628 - symbol:RPT1 "ATPase of the 19S regulator...   666  2.0e-65   1
DICTYBASE|DDB_G0276917 - symbol:psmC2 "26S proteasome ATP...   662  5.2e-65   1
FB|FBgn0020369 - symbol:Rpt6 "Regulatory particle triple-...   660  8.5e-65   1
UNIPROTKB|F1NU79 - symbol:PSMC5 "Uncharacterized protein"...   657  1.8e-64   1
UNIPROTKB|P62194 - symbol:PSMC5 "26S protease regulatory ...   657  1.8e-64   1
UNIPROTKB|P62195 - symbol:PSMC5 "26S protease regulatory ...   657  1.8e-64   1
UNIPROTKB|P62197 - symbol:PSMC5 "26S protease regulatory ...   657  1.8e-64   1
UNIPROTKB|Q4RG45 - symbol:GSTENG00035021001 "Chromosome 2...   657  1.8e-64   1
UNIPROTKB|Q6AZU7 - symbol:Q6AZU7 "Putative uncharacterize...   657  1.8e-64   1
UNIPROTKB|Q6P380 - symbol:psmc5 "Putative uncharacterized...   657  1.8e-64   1
MGI|MGI:105047 - symbol:Psmc5 "protease (prosome, macropa...   657  1.8e-64   1
RGD|708376 - symbol:Psmc5 "proteasome (prosome, macropain...   657  1.8e-64   1
ZFIN|ZDB-GENE-030131-6547 - symbol:psmc5 "proteasome (pro...   657  1.8e-64   1
POMBASE|SPBC23G7.12c - symbol:rpt6 "19S proteasome regula...   650  9.7e-64   1
UNIPROTKB|Q58576 - symbol:pan "Proteasome-activating nucl...   649  1.2e-63   1
TAIR|locus:2147670 - symbol:RPT6A "regulatory particle tr...   649  1.2e-63   1
TAIR|locus:2147685 - symbol:AT5G20000 species:3702 "Arabi...   649  1.2e-63   1
FB|FBgn0039788 - symbol:Rpt6R "Regulatory particle triple...   648  1.6e-63   1
GENEDB_PFALCIPARUM|PF10_0081 - symbol:PF10_0081 "26S prot...   648  1.6e-63   1
UNIPROTKB|Q8IJW0 - symbol:PF10_0081 "26S proteasome regul...   648  1.6e-63   1
UNIPROTKB|H0YJC0 - symbol:PSMC6 "26S protease regulatory ...   617  4.2e-63   2
GENEDB_PFALCIPARUM|PFL2345c - symbol:PFL2345c "tat-bindin...   643  5.4e-63   1
UNIPROTKB|Q8I4U5 - symbol:PFL2345c "Tat-binding protein h...   643  5.4e-63   1
UNIPROTKB|F1NSP7 - symbol:PSMC1 "26S protease regulatory ...   642  6.9e-63   1
UNIPROTKB|F1NTZ4 - symbol:PSMC1 "26S protease regulatory ...   642  6.9e-63   1
UNIPROTKB|P46470 - symbol:psmc5 "26S protease regulatory ...   642  6.9e-63   1
GENEDB_PFALCIPARUM|PF13_0063 - symbol:PF13_0063 "26S prot...   641  8.8e-63   1
UNIPROTKB|Q90732 - symbol:PSMC1 "26S protease regulatory ...   641  8.8e-63   1
UNIPROTKB|A4FUZ3 - symbol:PSMC1 "Proteasome (Prosome, mac...   641  8.8e-63   1
UNIPROTKB|F1PQ40 - symbol:PSMC1 "Uncharacterized protein"...   641  8.8e-63   1
UNIPROTKB|B4DR63 - symbol:PSMC1 "cDNA FLJ58247, highly si...   641  8.8e-63   1
UNIPROTKB|P62191 - symbol:PSMC1 "26S protease regulatory ...   641  8.8e-63   1
UNIPROTKB|F2Z5J1 - symbol:PSMC1 "Uncharacterized protein"...   641  8.8e-63   1
UNIPROTKB|Q8IEK3 - symbol:PF13_0063 "26S proteasome regul...   641  8.8e-63   1
MGI|MGI:106054 - symbol:Psmc1 "protease (prosome, macropa...   641  8.8e-63   1
RGD|621097 - symbol:Psmc1 "proteasome (prosome, macropain...   641  8.8e-63   1
WB|WBGene00004506 - symbol:rpt-6 species:6239 "Caenorhabd...   638  1.8e-62   1
FB|FBgn0015282 - symbol:Rpt2 "Regulatory particle triple-...   637  2.3e-62   1
DICTYBASE|DDB_G0292382 - symbol:psmC5 "HIV TAT binding-pr...   636  3.0e-62   1
ASPGD|ASPL0000064945 - symbol:AN6988 species:162425 "Emer...   633  6.2e-62   1
ZFIN|ZDB-GENE-040625-69 - symbol:psmc1b "proteasome (pros...   633  6.2e-62   1
WB|WBGene00018991 - symbol:F56F11.4 species:6239 "Caenorh...   632  7.9e-62   1
ZFIN|ZDB-GENE-030131-8730 - symbol:psmc1a "proteasome (pr...   632  7.9e-62   1
CGD|CAL0006022 - symbol:RPT6 species:5476 "Candida albica...   631  1.0e-61   1
TAIR|locus:2061639 - symbol:RPT2b "regulatory particle AA...   631  1.0e-61   1
DICTYBASE|DDB_G0270784 - symbol:psmC1 "TAT binding protei...   630  1.3e-61   1
TAIR|locus:2119926 - symbol:RPT2a "regulatory particle AA...   630  1.3e-61   1
ASPGD|ASPL0000049719 - symbol:AN2213 species:162425 "Emer...   622  9.0e-61   1
SGD|S000003016 - symbol:RPT6 "ATPase of the 19S regulator...   618  2.4e-60   1
WB|WBGene00004502 - symbol:rpt-2 species:6239 "Caenorhabd...   617  3.1e-60   1
GENEDB_PFALCIPARUM|PF11_0314 - symbol:PF11_0314 "26S prot...   615  5.0e-60   1
UNIPROTKB|Q8II60 - symbol:PF11_0314 "26S protease subunit...   615  5.0e-60   1

WARNING:  Descriptions of 656 database sequences were not reported due to the
          limiting value of parameter V = 100.


>UNIPROTKB|Q9FXT8 [details] [associations]
            symbol:OsRPT4 "Os02g0199900 protein" species:39947 "Oryza
            sativa Japonica Group" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005618
            GO:GO:0005730 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:AP008208
            EMBL:CM000139 KO:K03064 EMBL:AP004869 TIGRFAMs:TIGR01242
            OMA:EHKEVES GO:GO:0008540 ProtClustDB:CLSN2679874 EMBL:AP004812
            EMBL:AB033536 RefSeq:NP_001046218.1 UniGene:Os.292 IntAct:Q9FXT8
            STRING:Q9FXT8 EnsemblPlants:LOC_Os02g10640.1 GeneID:4328642
            KEGG:osa:4328642 Uniprot:Q9FXT8
        Length = 400

 Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
 Identities = 230/235 (97%), Positives = 234/235 (99%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR
Sbjct:   109 MTTLTIMRTLPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 168

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK+VSSAIIDKYIGESARLIREMFGY
Sbjct:   169 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGY 228

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD+LGKVKMIMATNR
Sbjct:   229 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDELGKVKMIMATNR 288

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PDVLDPALLRPGRLDRKIEIPLPNEQ+RME+LKIHAAGIAKHGEIDYEAVVKLAE
Sbjct:   289 PDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYEAVVKLAE 343


>TAIR|locus:2028200 [details] [associations]
            symbol:AT1G45000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0000502
            "proteasome complex" evidence=IDA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0030244
            "cellulose biosynthetic process" evidence=RCA] [GO:0048193 "Golgi
            vesicle transport" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005737 GO:GO:0005618 GO:GO:0005730 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AC007915 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            ProtClustDB:CLSN2679874 EMBL:AY062709 EMBL:AY114673 IPI:IPI00531336
            RefSeq:NP_175120.1 UniGene:At.27257 ProteinModelPortal:Q9MAK9
            SMR:Q9MAK9 IntAct:Q9MAK9 STRING:Q9MAK9 PaxDb:Q9MAK9 PRIDE:Q9MAK9
            EnsemblPlants:AT1G45000.1 GeneID:841065 KEGG:ath:AT1G45000
            GeneFarm:2760 TAIR:At1g45000 InParanoid:Q9MAK9 PhylomeDB:Q9MAK9
            Uniprot:Q9MAK9
        Length = 399

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 228/235 (97%), Positives = 232/235 (98%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLR
Sbjct:   108 MTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLR 167

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF Y
Sbjct:   168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             AR+HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR
Sbjct:   228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 287

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA+GIAKHGEIDYEA+VKL E
Sbjct:   288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGE 342


>TAIR|locus:2159996 [details] [associations]
            symbol:RPT4A "regulatory particle triple-A ATPase 4A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AB008264 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123393 EMBL:AF372945 EMBL:AY078040 EMBL:AK220732
            IPI:IPI00547512 RefSeq:NP_199115.1 UniGene:At.6532
            ProteinModelPortal:Q9SEI3 SMR:Q9SEI3 IntAct:Q9SEI3 STRING:Q9SEI3
            PaxDb:Q9SEI3 PRIDE:Q9SEI3 EnsemblPlants:AT5G43010.1 GeneID:834316
            KEGG:ath:AT5G43010 GeneFarm:2749 TAIR:At5g43010 InParanoid:Q9SEI3
            OMA:NAPFDPE PhylomeDB:Q9SEI3 ProtClustDB:CLSN2679874 Uniprot:Q9SEI3
        Length = 399

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 228/235 (97%), Positives = 232/235 (98%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLR
Sbjct:   108 MTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLR 167

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF Y
Sbjct:   168 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNY 227

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             AR+HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD LGKVKMIMATNR
Sbjct:   228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNR 287

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PDVLDPALLRPGRLDRKIEIPLPNEQSRM+ILKIHAAGIAKHGEIDYEA+VKLAE
Sbjct:   288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAE 342


>FB|FBgn0028685 [details] [associations]
            symbol:Rpt4 "Regulatory particle triple-A ATPase 4"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:1901838 "positive regulation of transcription of nuclear large
            rRNA transcript from RNA polymerase I promoter" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001163 "RNA polymerase I
            regulatory region sequence-specific DNA binding" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0005875 GO:GO:0022008
            GO:GO:0006508 GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 HSSP:Q01853
            TIGRFAMs:TIGR01242 GO:GO:0008540 EMBL:AY071182
            ProteinModelPortal:Q8SZ19 SMR:Q8SZ19 IntAct:Q8SZ19 STRING:Q8SZ19
            PRIDE:Q8SZ19 FlyBase:FBgn0028685 InParanoid:Q8SZ19
            OrthoDB:EOG43TX9X ChiTaRS:Rpt4 ArrayExpress:Q8SZ19 Bgee:Q8SZ19
            Uniprot:Q8SZ19
        Length = 397

 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 208/235 (88%), Positives = 224/235 (95%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPG+V+YSA+GGL+DQIRELRE IELPL+NPELFLR
Sbjct:   110 MTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLR 169

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +DANFLKVVSSAI+DKYIGESARLIREMF Y
Sbjct:   170 VGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNY 229

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD LG+VKMIMATNR
Sbjct:   230 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNR 289

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKIEIPLPNEQ+R+EILKIHA  IAKHGEIDYEA+VKL++
Sbjct:   290 PDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSD 344


>FB|FBgn0036224 [details] [associations]
            symbol:Rpt4R "Regulatory particle triple-A ATPase 4-related"
            species:7227 "Drosophila melanogaster" [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014296
            GO:GO:0006200 GO:GO:0006974 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 EMBL:AY089267 RefSeq:NP_648525.1
            UniGene:Dm.5141 SMR:Q9VTQ9 IntAct:Q9VTQ9 MINT:MINT-869141
            STRING:Q9VTQ9 EnsemblMetazoa:FBtr0076040 GeneID:39351
            KEGG:dme:Dmel_CG7257 UCSC:CG7257-RA CTD:39351 FlyBase:FBgn0036224
            InParanoid:Q9VTQ9 OMA:CAIWTEA OrthoDB:EOG4VT4CM GenomeRNAi:39351
            NextBio:813228 Uniprot:Q9VTQ9
        Length = 398

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 200/236 (84%), Positives = 219/236 (92%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             +TTLTIMR LPREVDP+VYNM HEDPGNV+Y+ +GGL  QIRELRE IELPL+NP++FLR
Sbjct:   111 VTTLTIMRYLPREVDPLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLR 170

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARAIAS +DANFLKVVSSAI+DKYIGESARLIREMF Y
Sbjct:   171 VGISPPKGCLLYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAY 230

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD LG+VKMIMATNR
Sbjct:   231 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDALGQVKMIMATNR 290

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236
             PD LDPALLRPGRLDRK+EIPLPNE +RM+ILKIHA  + K GEIDYEAVVKL+++
Sbjct:   291 PDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346


>WB|WBGene00004504 [details] [associations]
            symbol:rpt-4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 200/235 (85%), Positives = 218/235 (92%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VY M HEDPGN+SYS VGGL++QIRELRE +ELPL+NPELF R
Sbjct:   119 MTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKR 178

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LL+GPPGTGKTLLARA+AS +D NFLKVVSSAI+DKYIGESAR+IREMF Y
Sbjct:   179 VGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNY 238

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCI+FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD LGKVK+IMATNR
Sbjct:   239 ARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNR 298

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKIEI LPNEQSR+EILKIH+  I KHGEID+EAVVKL++
Sbjct:   299 PDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSD 353


>UNIPROTKB|O17071 [details] [associations]
            symbol:rpt-4 "Probable 26S protease regulatory subunit 10B"
            species:6239 "Caenorhabditis elegans" [GO:0042802 "identical
            protein binding" evidence=IPI] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0002119
            GO:GO:0010171 GO:GO:0040011 GO:GO:0000003 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:FO080251 PIR:T32268 RefSeq:NP_001022113.1
            RefSeq:NP_001022114.1 ProteinModelPortal:O17071 SMR:O17071
            IntAct:O17071 MINT:MINT-210603 STRING:O17071 PaxDb:O17071
            PRIDE:O17071 EnsemblMetazoa:F23F1.8a GeneID:173384
            KEGG:cel:CELE_F23F1.8 UCSC:F23F1.8a CTD:173384 WormBase:F23F1.8a
            WormBase:F23F1.8b GeneTree:ENSGT00550000074826 InParanoid:O17071
            OMA:EHKEVES NextBio:879415 GO:GO:0008540 Uniprot:O17071
        Length = 406

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 200/235 (85%), Positives = 218/235 (92%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VY M HEDPGN+SYS VGGL++QIRELRE +ELPL+NPELF R
Sbjct:   119 MTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKR 178

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LL+GPPGTGKTLLARA+AS +D NFLKVVSSAI+DKYIGESAR+IREMF Y
Sbjct:   179 VGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNY 238

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCI+FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD LGKVK+IMATNR
Sbjct:   239 ARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNR 298

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKIEI LPNEQSR+EILKIH+  I KHGEID+EAVVKL++
Sbjct:   299 PDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSD 353


>UNIPROTKB|F1MLV1 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00707369
            UniGene:Bt.22570 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            EMBL:DAAA02027846 ProteinModelPortal:F1MLV1 SMR:F1MLV1 PRIDE:F1MLV1
            Ensembl:ENSBTAT00000020886 Uniprot:F1MLV1
        Length = 389

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 281

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   282 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 336


>UNIPROTKB|Q2KIW6 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:BC112482
            IPI:IPI00707369 RefSeq:NP_001039705.1 UniGene:Bt.22570
            ProteinModelPortal:Q2KIW6 STRING:Q2KIW6 PRIDE:Q2KIW6 GeneID:518637
            KEGG:bta:518637 CTD:5706 HOGENOM:HOG000225143 InParanoid:Q2KIW6
            OrthoDB:EOG408N84 NextBio:20872697 Uniprot:Q2KIW6
        Length = 389

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 281

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   282 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 336


>UNIPROTKB|J9P1N0 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:AAEX03016845 Ensembl:ENSCAFT00000019502
            Uniprot:J9P1N0
        Length = 395

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   108 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 167

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   168 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 227

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   228 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 287

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   288 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 342


>UNIPROTKB|P62333 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0016887 "ATPase
            activity" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IC]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0030674 GO:GO:0016887
            EMBL:CH471078 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 EMBL:D78275 EMBL:AF006305 EMBL:BT006843
            EMBL:CR456709 EMBL:AK313670 EMBL:BC005390 IPI:IPI00926977
            PIR:S71316 RefSeq:NP_002797.3 UniGene:Hs.156171
            ProteinModelPortal:P62333 SMR:P62333 DIP:DIP-38150N IntAct:P62333
            MINT:MINT-5001174 STRING:P62333 PhosphoSite:P62333 DMDM:51702772
            REPRODUCTION-2DPAGE:IPI00021926 PaxDb:P62333 PeptideAtlas:P62333
            PRIDE:P62333 DNASU:5706 Ensembl:ENST00000445930 GeneID:5706
            KEGG:hsa:5706 UCSC:uc010tqx.2 GeneCards:GC14P053173
            H-InvDB:HIX0011661 HGNC:HGNC:9553 HPA:HPA042823 MIM:602708
            neXtProt:NX_P62333 PharmGKB:PA33898 InParanoid:P62333
            PhylomeDB:P62333 GenomeRNAi:5706 NextBio:22170 Bgee:P62333
            CleanEx:HS_PSMC6 Genevestigator:P62333 GermOnline:ENSG00000100519
            Uniprot:P62333
        Length = 389

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 281

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   282 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 336


>UNIPROTKB|F1SFE6 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064
            TIGRFAMs:TIGR01242 CTD:5706 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:CU407115 RefSeq:XP_001928782.2 UniGene:Ssc.51323
            Ensembl:ENSSSCT00000005554 GeneID:100154148 KEGG:ssc:100154148
            ArrayExpress:F1SFE6 Uniprot:F1SFE6
        Length = 403

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   116 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 175

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   176 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 235

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   236 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 295

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   296 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 350


>UNIPROTKB|P62335 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:43179 "Spermophilus tridecemlineatus" [GO:0022624
            "proteasome accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826
            OMA:EHKEVES EMBL:U36395 PIR:JC5349 ProteinModelPortal:P62335
            SMR:P62335 PRIDE:P62335 Ensembl:ENSSTOT00000014492 Uniprot:P62335
        Length = 389

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 281

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   282 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 336


>MGI|MGI:1914339 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1914339
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 OMA:EHKEVES EMBL:AK012174 EMBL:AK014354
            EMBL:AK144728 EMBL:AK166961 EMBL:BC043044 EMBL:BC057997
            IPI:IPI00125971 RefSeq:NP_080235.2 UniGene:Mm.18472
            ProteinModelPortal:P62334 SMR:P62334 IntAct:P62334 STRING:P62334
            PhosphoSite:P62334 REPRODUCTION-2DPAGE:IPI00125971
            REPRODUCTION-2DPAGE:P62334 PaxDb:P62334 PRIDE:P62334
            Ensembl:ENSMUST00000022380 GeneID:67089 KEGG:mmu:67089
            InParanoid:P62334 NextBio:323546 Bgee:P62334 Genevestigator:P62334
            GermOnline:ENSMUSG00000021832 Uniprot:P62334
        Length = 389

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 281

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   282 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 336


>RGD|1308825 [details] [associations]
            symbol:Psmc6 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 6" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886
            "plasma membrane" evidence=ISO] [GO:0022624 "proteasome accessory
            complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:1308825 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 RefSeq:NP_001093979.1 UniGene:Rn.103233
            GeneID:289990 KEGG:rno:289990 NextBio:630545 EMBL:BC107950
            IPI:IPI00362105 ProteinModelPortal:Q32PW9 IntAct:Q32PW9
            STRING:Q32PW9 PhosphoSite:Q32PW9 PRIDE:Q32PW9 UCSC:RGD:1308825
            InParanoid:Q32PW9 ArrayExpress:Q32PW9 Genevestigator:Q32PW9
            Uniprot:Q32PW9
        Length = 381

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:    94 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 153

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   154 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 213

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   214 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 273

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   274 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 328


>RGD|2318218 [details] [associations]
            symbol:LOC100365869 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6-like" species:10116 "Rattus norvegicus"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:2318218
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:CH474040 KO:K03064 TIGRFAMs:TIGR01242 CTD:5706
            GeneTree:ENSGT00550000074826 RefSeq:NP_001093979.1
            UniGene:Rn.103233 Ensembl:ENSRNOT00000009649 GeneID:289990
            KEGG:rno:289990 NextBio:630545 Uniprot:G3V6W6
        Length = 403

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 201/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   116 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 175

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   176 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 235

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   236 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 295

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   296 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 350


>UNIPROTKB|F1NCS8 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074826 OMA:EHKEVES EMBL:AADN02004069
            IPI:IPI00570965 Ensembl:ENSGALT00000020277 ArrayExpress:F1NCS8
            Uniprot:F1NCS8
        Length = 403

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 200/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPG+VSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   116 MTTLTIMRYLPREVDPLVYNMSHEDPGDVSYSEIGGLSEQIRELREVIELPLTNPELFQR 175

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   176 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 235

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   236 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 295

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   296 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 350


>UNIPROTKB|Q5ZKX2 [details] [associations]
            symbol:PSMC6 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0022624 "proteasome accessory
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            OrthoDB:EOG408N84 GeneTree:ENSGT00550000074826 EMBL:AADN02004069
            EMBL:AJ719962 IPI:IPI00820938 RefSeq:NP_001006494.1
            UniGene:Gga.16005 STRING:Q5ZKX2 Ensembl:ENSGALT00000037197
            GeneID:423586 KEGG:gga:423586 InParanoid:Q5ZKX2 NextBio:20826039
            Uniprot:Q5ZKX2
        Length = 389

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 200/235 (85%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPG+VSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGDVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 281

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++
Sbjct:   282 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSD 336


>DICTYBASE|DDB_G0284517 [details] [associations]
            symbol:psmC6 "26S protease regulatory subunit S10B"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 dictyBase:DDB_G0284517
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GenomeReviews:CM000153_GR
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            EMBL:AAFI02000066 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            RefSeq:XP_638541.1 ProteinModelPortal:Q54PJ1 STRING:Q54PJ1
            EnsemblProtists:DDB0232968 GeneID:8624634 KEGG:ddi:DDB_G0284517
            OMA:HAANITK ProtClustDB:CLSZ2429012 Uniprot:Q54PJ1
        Length = 393

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 194/235 (82%), Positives = 219/235 (93%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             +TTLTI++ LPREVDP+++NM  E PG+VSY  +GGLS+QIRELRE +ELPLM PELF+R
Sbjct:   106 LTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIR 165

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIK PKGVLLYGPPGTGKTLLARAIASN++ANFLKVVSSAI+DKYIGESAR+IREMFGY
Sbjct:   166 VGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGY 225

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPC+IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L KVK+IMATNR
Sbjct:   226 ARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNR 285

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PDVLDPALLRPGRLDRKIEIPLPNE  R+++LKIHAA I KHG++DYEA+ KLA+
Sbjct:   286 PDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLAD 340


>ZFIN|ZDB-GENE-030131-304 [details] [associations]
            symbol:psmc6 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 6" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233 "peptidase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-304 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008233 KO:K03064 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 CTD:5706 HOGENOM:HOG000225143
            GeneTree:ENSGT00550000074826 OMA:NAPFDPE EMBL:BX936454
            EMBL:AL954679 EMBL:BC083283 EMBL:BC152260 EMBL:BC155769
            EMBL:AY648827 IPI:IPI00507865 RefSeq:NP_001003832.1
            UniGene:Dr.32860 STRING:Q6DRD2 Ensembl:ENSDART00000053834
            GeneID:321585 KEGG:dre:321585 InParanoid:Q6DRD2 NextBio:20807435
            Uniprot:Q6DRD2
        Length = 389

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 198/235 (84%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPG+VSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGSVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD L +VKMIMATNR
Sbjct:   222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNR 281

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKI I LPNEQ+R++ILKIH+  I KHG+IDYEA+VKL++
Sbjct:   282 PDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSD 336


>POMBASE|SPCC1682.16 [details] [associations]
            symbol:rpt4 "19S proteasome regulatory subunit Rpt4
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISM] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=NAS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC1682.16 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0007346 GO:GO:0043161 EMBL:CU329672 GenomeReviews:CU329672_GR
            GO:GO:0016887 GO:GO:0004175 KO:K03064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PIR:T41073
            PIR:T41279 RefSeq:NP_587809.2 ProteinModelPortal:O74445
            STRING:O74445 PRIDE:O74445 EnsemblFungi:SPCC1682.16.1
            GeneID:2539189 KEGG:spo:SPCC1682.16 OMA:DKERFIV OrthoDB:EOG40KC79
            NextBio:20800360 Uniprot:O74445
        Length = 388

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 193/235 (82%), Positives = 217/235 (92%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM  EDPG++S++ VGGL++QIRELRE IELPL NPELFLR
Sbjct:   101 MTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLR 160

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIKPPKGVLLYGPPGTGKTLLARA+A+++  NFLKVVSSAI+DKYIGESAR+IREMFGY
Sbjct:   161 VGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGY 220

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             A++H+PC+IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD LG+ K+IMATNR
Sbjct:   221 AKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNR 280

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRKIEIPLPNE  RMEILKIH   ++K GEIDYEA+VKL +
Sbjct:   281 PDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTD 335


>ASPGD|ASPL0000032311 [details] [associations]
            symbol:AN5747 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IEA] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IEA] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IEA] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 OMA:EHKEVES
            EnsemblFungi:CADANIAT00003315 Uniprot:C8VFJ3
        Length = 393

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 190/235 (80%), Positives = 216/235 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM  EDPG ++++ +GGL+DQIRELRE IELPL NPELF R
Sbjct:   106 MTTLTIMRMLPREVDPLVYNMSLEDPGQINFAGIGGLNDQIRELREVIELPLKNPELFQR 165

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIKPPKGVLLYGPPGTGKTLLARA+AS+++ NFLKVVSSAI+DKYIGESARLIREMFGY
Sbjct:   166 VGIKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGY 225

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             A++H+PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD LGK K+IMATNR
Sbjct:   226 AKEHEPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDYLGKTKIIMATNR 285

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLR GRLDRKIEIPLPNE  R+EILKIH++ +   G+ID+E+VVK+++
Sbjct:   286 PDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQMEGDIDFESVVKMSD 340


>CGD|CAL0005827 [details] [associations]
            symbol:RPT4 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0019904 "protein domain specific binding"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0005827 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000055 EMBL:AACQ01000054 KO:K03064
            eggNOG:COG1222 TIGRFAMs:TIGR01242 RefSeq:XP_717345.1
            RefSeq:XP_717434.1 ProteinModelPortal:Q5A6S2 STRING:Q5A6S2
            GeneID:3640859 GeneID:3640966 KEGG:cal:CaO19.482
            KEGG:cal:CaO19.8112 Uniprot:Q5A6S2
        Length = 428

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 179/235 (76%), Positives = 207/235 (88%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM   +PG +S++ +GGL++QIRELRE IELPL NPELF R
Sbjct:   141 MTTLTIMRILPREVDPLVYNMTTFEPGEISFNGIGGLTEQIRELREVIELPLKNPELFTR 200

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIKPPKGVLLYGPPGTGKTLLA+A+A+ I ANF+   +SAI+DKYIGESARLIREMF Y
Sbjct:   201 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAY 260

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             A++H+PCIIFMDE+DAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD LG+ K+IMATNR
Sbjct:   261 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLGQTKIIMATNR 320

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLR GRLDRKIEI LPNE  R+EI KIH + +AK GE D+EA VK+++
Sbjct:   321 PDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFEAAVKMSD 375


>SGD|S000005785 [details] [associations]
            symbol:RPT4 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0045899 "positive regulation of
            RNA polymerase II transcriptional preinitiation complex assembly"
            evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IMP] [GO:0030433 "ER-associated protein
            catabolic process" evidence=IMP] [GO:0032968 "positive regulation
            of transcription elongation from RNA polymerase II promoter"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=IGI] [GO:0019904 "protein domain specific binding"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000005785 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0019904 EMBL:BK006948 GO:GO:0016887
            GO:GO:0030433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            RefSeq:NP_014902.3 GeneID:854433 KEGG:sce:YOR259C KO:K03064
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GeneTree:ENSGT00550000074826 OMA:EHKEVES
            GO:GO:0008540 OrthoDB:EOG40KC79 EMBL:U43720 EMBL:U93262 EMBL:Z75167
            PIR:S67156 RefSeq:NP_014904.3 PDB:4B4T PDBsum:4B4T
            ProteinModelPortal:P53549 SMR:P53549 DIP:DIP-1589N IntAct:P53549
            MINT:MINT-397407 STRING:P53549 PaxDb:P53549 PeptideAtlas:P53549
            EnsemblFungi:YOR259C GeneID:854435 KEGG:sce:YOR261C KO:K03038
            NextBio:976664 Genevestigator:P53549 GermOnline:YOR259C
            Uniprot:P53549
        Length = 437

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 172/235 (73%), Positives = 203/235 (86%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             +TTLTIMR LPRE DP+VYNM   + G +++  +GGL++QIRELRE IELPL NPE+F R
Sbjct:   150 ITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQR 209

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGIKPPKGVLLYGPPGTGKTLLA+A+A+ I ANF+   +S I+DKYIGESAR+IREMF Y
Sbjct:   210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAY 269

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             A++H+PCIIFMDE+DAIGGRRFSEGTSADREIQRTLMELL Q+DGFD LG+ K+IMATNR
Sbjct:   270 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PD LDPALLRPGRLDRK+EIPLPNE  R+EI KIH A + K GE D+EA VK+++
Sbjct:   330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSD 384


>GENEDB_PFALCIPARUM|PF13_0033 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory
            subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853
            GO:GO:0017111 EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 OMA:EHKEVES ProtClustDB:CLSZ2429012
            GO:GO:0005838 RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1
            PRIDE:Q8IEQ1 EnsemblProtists:PF13_0033:mRNA GeneID:814012
            KEGG:pfa:PF13_0033 EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 176/241 (73%), Positives = 213/241 (88%)

Query:     1 MTTLTIMRALPREVDPVVYNMLH-----EDPGN-VSYSAVGGLSDQIRELRESIELPLMN 54
             MTTLT+M+ LP EVDP+V+NM+      E+  N V+Y+ +GGLS+QIR++RE +ELP++N
Sbjct:   100 MTTLTVMKRLPCEVDPLVFNMISDIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILN 159

Query:    55 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLI 114
             P L+ RVGIK PKGVLLYGPPGTGKTLLARA+ASNI+ NF+++V SAI+DKYIGESAR+I
Sbjct:   160 PYLYKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARII 219

Query:   115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174
             REMF YA++HQPCIIFMDEIDAIGGRRFS+GTSADREIQRTLMELLN LDGF++LG VK+
Sbjct:   220 REMFNYAKEHQPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKI 279

Query:   175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234
             IMATNRPDVLDPAL+RPGRLDRKIEIPLPNE +R+EILKIHA  + K G+IDYE+V +L 
Sbjct:   280 IMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLC 339

Query:   235 E 235
             +
Sbjct:   340 D 340


>UNIPROTKB|Q8IEQ1 [details] [associations]
            symbol:PF13_0033 "26S proteasome regulatory subunit,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            EMBL:AL844509 KO:K03064 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            OMA:EHKEVES ProtClustDB:CLSZ2429012 GO:GO:0005838
            RefSeq:XP_001349791.1 ProteinModelPortal:Q8IEQ1 PRIDE:Q8IEQ1
            EnsemblProtists:PF13_0033:mRNA GeneID:814012 KEGG:pfa:PF13_0033
            EuPathDB:PlasmoDB:PF3D7_1306400 Uniprot:Q8IEQ1
        Length = 393

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 176/241 (73%), Positives = 213/241 (88%)

Query:     1 MTTLTIMRALPREVDPVVYNMLH-----EDPGN-VSYSAVGGLSDQIRELRESIELPLMN 54
             MTTLT+M+ LP EVDP+V+NM+      E+  N V+Y+ +GGLS+QIR++RE +ELP++N
Sbjct:   100 MTTLTVMKRLPCEVDPLVFNMISDIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILN 159

Query:    55 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLI 114
             P L+ RVGIK PKGVLLYGPPGTGKTLLARA+ASNI+ NF+++V SAI+DKYIGESAR+I
Sbjct:   160 PYLYKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARII 219

Query:   115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174
             REMF YA++HQPCIIFMDEIDAIGGRRFS+GTSADREIQRTLMELLN LDGF++LG VK+
Sbjct:   220 REMFNYAKEHQPCIIFMDEIDAIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKI 279

Query:   175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234
             IMATNRPDVLDPAL+RPGRLDRKIEIPLPNE +R+EILKIHA  + K G+IDYE+V +L 
Sbjct:   280 IMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLC 339

Query:   235 E 235
             +
Sbjct:   340 D 340


>UNIPROTKB|Q5R8D7 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9601 "Pongo abelii" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:CR859816 RefSeq:NP_001126144.1
            UniGene:Pab.13078 ProteinModelPortal:Q5R8D7 PRIDE:Q5R8D7
            GeneID:100173102 KEGG:pon:100173102 InParanoid:Q5R8D7
            Uniprot:Q5R8D7
        Length = 433

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 126/224 (56%), Positives = 170/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  ILKIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARL 376


>FB|FBgn0028687 [details] [associations]
            symbol:Rpt1 "Regulatory particle triple-A ATPase 1"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0006508
            "proteolysis" evidence=ISS;IDA] [GO:0004175 "endopeptidase
            activity" evidence=IDA] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS;IDA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE013599 GO:GO:0005524 GO:GO:0005737
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            KO:K03061 OMA:DIRWELI GeneTree:ENSGT00550000074978 HSSP:Q9LCZ4
            EMBL:AF145307 EMBL:AY061606 RefSeq:NP_477473.1 UniGene:Dm.3425
            SMR:Q7KMQ0 IntAct:Q7KMQ0 STRING:Q7KMQ0 EnsemblMetazoa:FBtr0088947
            GeneID:35701 KEGG:dme:Dmel_CG1341 UCSC:CG1341-RA CTD:35701
            FlyBase:FBgn0028687 HOGENOM:HOG000237377 InParanoid:Q7KMQ0
            OrthoDB:EOG4X3FGQ GenomeRNAi:35701 NextBio:794815 Uniprot:Q7KMQ0
        Length = 433

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 124/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  ED  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEDKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRK+E  LP++  R  I KIHA  ++   +I ++ + +L
Sbjct:   333 RPGRLDRKVEFGLPDQDGRSHIFKIHARSMSVERDIRFDLLARL 376


>WB|WBGene00004501 [details] [associations]
            symbol:rpt-1 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0016887 GO:GO:0000502 GO:GO:0006511 EMBL:Z78012
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 PIR:T20152
            RefSeq:NP_506005.1 ProteinModelPortal:Q18787 SMR:Q18787
            IntAct:Q18787 MINT:MINT-212537 STRING:Q18787 PaxDb:Q18787
            PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1 EnsemblMetazoa:C52E4.4.2
            GeneID:179641 KEGG:cel:CELE_C52E4.4 UCSC:C52E4.4.1 CTD:179641
            WormBase:C52E4.4 InParanoid:Q18787 NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  DQI +LRE +E PL++PE ++ +GI+PPKGV
Sbjct:   155 LPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGV 214

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   215 LLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 274

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDA+GG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   275 FFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 334

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRK+E  LP+   R  ILKIHA  ++   +I Y+ + +L
Sbjct:   335 RPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARL 378


>UNIPROTKB|Q18787 [details] [associations]
            symbol:rpt-1 "26S protease regulatory subunit 7"
            species:6239 "Caenorhabditis elegans" [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0016887 GO:GO:0000502
            GO:GO:0006511 EMBL:Z78012 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 PIR:T20152 RefSeq:NP_506005.1
            ProteinModelPortal:Q18787 SMR:Q18787 IntAct:Q18787 MINT:MINT-212537
            STRING:Q18787 PaxDb:Q18787 PRIDE:Q18787 EnsemblMetazoa:C52E4.4.1
            EnsemblMetazoa:C52E4.4.2 GeneID:179641 KEGG:cel:CELE_C52E4.4
            UCSC:C52E4.4.1 CTD:179641 WormBase:C52E4.4 InParanoid:Q18787
            NextBio:906264 Uniprot:Q18787
        Length = 435

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  DQI +LRE +E PL++PE ++ +GI+PPKGV
Sbjct:   155 LPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGV 214

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   215 LLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 274

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDA+GG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   275 FFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 334

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRK+E  LP+   R  ILKIHA  ++   +I Y+ + +L
Sbjct:   335 RPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARL 378


>UNIPROTKB|E1C4V5 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            EMBL:AADN02036894 EMBL:AADN02036895 IPI:IPI00602342
            Ensembl:ENSGALT00000013403 ArrayExpress:E1C4V5 Uniprot:E1C4V5
        Length = 424

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   144 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 203

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   204 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 263

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   264 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 323

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   324 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 367


>UNIPROTKB|F1NFL8 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 OMA:DIRWELI
            GeneTree:ENSGT00550000074978 EMBL:AADN02036894 EMBL:AADN02036895
            IPI:IPI00821647 Ensembl:ENSGALT00000039595 ArrayExpress:F1NFL8
            Uniprot:F1NFL8
        Length = 432

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   152 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 211

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   212 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 271

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   272 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 331

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   332 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 375


>UNIPROTKB|Q5E9F9 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9913 "Bos taurus" [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=ISS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0006511 HSSP:Q9WZ49 GO:GO:0000932 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 KO:K03061 OMA:DIRWELI
            EMBL:BT020961 EMBL:BC102391 IPI:IPI00693210 RefSeq:NP_001015639.1
            UniGene:Bt.24017 ProteinModelPortal:Q5E9F9 SMR:Q5E9F9 PRIDE:Q5E9F9
            Ensembl:ENSBTAT00000065774 GeneID:530186 KEGG:bta:530186 CTD:5701
            GeneTree:ENSGT00550000074978 OrthoDB:EOG4RXZ05 NextBio:20875201
            Uniprot:Q5E9F9
        Length = 433

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>UNIPROTKB|F1PPH7 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
            GO:GO:0000502 GO:GO:0006511 TIGRFAMs:TIGR01242 KO:K03061
            OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978 EMBL:AAEX03011248
            RefSeq:XP_533103.3 ProteinModelPortal:F1PPH7
            Ensembl:ENSCAFT00000006754 GeneID:475896 KEGG:cfa:475896
            Uniprot:F1PPH7
        Length = 433

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>UNIPROTKB|B7Z5E2 [details] [associations]
            symbol:PSMC2 "cDNA FLJ52353, highly similar to 26S protease
            regulatory subunit 7" species:9606 "Homo sapiens" [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=IEA] [GO:0008233 "peptidase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0030163 GO:GO:0017111 GO:GO:0008233 EMBL:AC004668
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 UniGene:Hs.437366
            HGNC:HGNC:9548 ChiTaRS:PSMC2 EMBL:AC093701 EMBL:AK298821
            IPI:IPI01015219 SMR:B7Z5E2 STRING:B7Z5E2 Ensembl:ENST00000544811
            Uniprot:B7Z5E2
        Length = 296

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:    16 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 75

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:    76 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 135

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   136 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 195

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   196 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 239


>UNIPROTKB|P35998 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
            evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
            phase of mitotic cell cycle" evidence=TAS] [GO:0000209 "protein
            polyubiquitination" evidence=TAS] [GO:0000216 "M/G1 transition of
            mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0002474 "antigen processing and presentation of
            peptide antigen via MHC class I" evidence=TAS] [GO:0002479 "antigen
            processing and presentation of exogenous peptide antigen via MHC
            class I, TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0019048
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0016887
            GO:GO:0051436 GO:GO:0000932 EMBL:CH471070 GO:GO:0000216
            GO:GO:0000209 GO:GO:0000084 GO:GO:0031145 GO:GO:0051437
            EMBL:CH236947 GO:GO:0006521 Reactome:REACT_383 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI CTD:5701 EMBL:D11094
            EMBL:AB075520 EMBL:BC002589 IPI:IPI00021435 PIR:S24353
            RefSeq:NP_001191382.1 RefSeq:NP_002794.1 UniGene:Hs.437366
            ProteinModelPortal:P35998 SMR:P35998 DIP:DIP-27554N IntAct:P35998
            MINT:MINT-1163662 STRING:P35998 PhosphoSite:P35998 DMDM:547930
            OGP:P35998 REPRODUCTION-2DPAGE:IPI00021435
            REPRODUCTION-2DPAGE:P35998 PaxDb:P35998 PeptideAtlas:P35998
            PRIDE:P35998 DNASU:5701 Ensembl:ENST00000292644
            Ensembl:ENST00000435765 GeneID:5701 KEGG:hsa:5701 UCSC:uc003vbs.3
            GeneCards:GC07P102984 HGNC:HGNC:9548 HPA:HPA019238 MIM:154365
            neXtProt:NX_P35998 PharmGKB:PA33893 InParanoid:P35998
            PhylomeDB:P35998 ChiTaRS:PSMC2 GenomeRNAi:5701 NextBio:22150
            ArrayExpress:P35998 Bgee:P35998 CleanEx:HS_PSMC2
            Genevestigator:P35998 GermOnline:ENSG00000161057 Uniprot:P35998
        Length = 433

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>UNIPROTKB|F1SB53 [details] [associations]
            symbol:PSMC2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            OMA:HIFTIHA EMBL:CU570825 Ensembl:ENSSSCT00000016802 Uniprot:F1SB53
        Length = 475

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   195 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 254

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   255 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 314

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   315 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 374

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   375 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 418


>UNIPROTKB|I3LJ30 [details] [associations]
            symbol:I3LJ30 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 GeneTree:ENSGT00550000074978
            Ensembl:ENSSSCT00000030050 OMA:WDLAYEN Uniprot:I3LJ30
        Length = 434

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   154 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 213

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   214 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 273

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   274 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 333

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   334 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 377


>UNIPROTKB|P46472 [details] [associations]
            symbol:psmc2 "26S protease regulatory subunit 7"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03061 CTD:5701 EMBL:X80157 EMBL:BC054143 PIR:S53709
            RefSeq:NP_001084136.1 UniGene:Xl.57157 ProteinModelPortal:P46472
            GeneID:399327 KEGG:xla:399327 Xenbase:XB-GENE-1000023
            Uniprot:P46472
        Length = 433

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>UNIPROTKB|Q4R4R0 [details] [associations]
            symbol:PSMC2 "26S protease regulatory subunit 7"
            species:9541 "Macaca fascicularis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing body"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0006511 HSSP:Q9WZ49
            GO:GO:0000932 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            EMBL:AB169834 ProteinModelPortal:Q4R4R0 SMR:Q4R4R0 PRIDE:Q4R4R0
            Uniprot:Q4R4R0
        Length = 433

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>MGI|MGI:109555 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit,
            ATPase 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
            "ATP catabolic process" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=ISO] [GO:0017025 "TBP-class protein binding"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IDA] [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            MGI:MGI:109555 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            OrthoDB:EOG4RXZ05 ChiTaRS:PSMC2 EMBL:AK005083 EMBL:AK168548
            EMBL:BC005462 EMBL:U61283 IPI:IPI00270326 PIR:S39349
            UniGene:Mm.2462 ProteinModelPortal:P46471 SMR:P46471 IntAct:P46471
            STRING:P46471 PhosphoSite:P46471 REPRODUCTION-2DPAGE:P46471
            SWISS-2DPAGE:P46471 PaxDb:P46471 PRIDE:P46471 InParanoid:P46471
            Bgee:P46471 Genevestigator:P46471 GermOnline:ENSMUSG00000028932
            Uniprot:P46471
        Length = 433

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>ZFIN|ZDB-GENE-040426-1327 [details] [associations]
            symbol:psmc2 "proteasome (prosome, macropain) 26S
            subunit, ATPase 2" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040426-1327 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03061 OMA:DIRWELI CTD:5701 GeneTree:ENSGT00550000074978
            OrthoDB:EOG4RXZ05 HSSP:Q9LCZ4 EMBL:BX571796 EMBL:BC053187
            IPI:IPI00491385 RefSeq:NP_957260.1 UniGene:Dr.75589 STRING:Q7T3B1
            Ensembl:ENSDART00000019647 GeneID:393941 KEGG:dre:393941
            InParanoid:Q7T3B1 NextBio:20814913 Uniprot:Q7T3B1
        Length = 433

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/224 (55%), Positives = 169/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>RGD|3428 [details] [associations]
            symbol:Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase
          2" species:10116 "Rattus norvegicus" [GO:0000502 "proteasome complex"
          evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
          evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
          "nucleus" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
          [GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0006200 "ATP
          catabolic process" evidence=ISO] [GO:0006511 "ubiquitin-dependent
          protein catabolic process" evidence=IEA;ISO] [GO:0016887 "ATPase
          activity" evidence=IEA;ISO] [GO:0017025 "TBP-class protein binding"
          evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
          evidence=IEA] [GO:0022624 "proteasome accessory complex"
          evidence=IEA;ISO;ISS] [GO:0030163 "protein catabolic process"
          evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
          InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
          InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
          RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0016887
          GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242
          HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03061
          CTD:5701 OrthoDB:EOG4RXZ05 EMBL:D50694 EMBL:BC061542 EMBL:U13895
          IPI:IPI00421600 RefSeq:NP_150239.1 UniGene:Rn.1202
          ProteinModelPortal:Q63347 IntAct:Q63347 MINT:MINT-1794034
          STRING:Q63347 PhosphoSite:Q63347 PRIDE:Q63347 GeneID:25581
          KEGG:rno:25581 InParanoid:Q63347 NextBio:607227 Genevestigator:Q63347
          GermOnline:ENSRNOG00000012026 Uniprot:Q63347
        Length = 433

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 125/224 (55%), Positives = 168/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F+ V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>UNIPROTKB|Q63347 [details] [associations]
            symbol:Psmc2 "26S protease regulatory subunit 7"
            species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 RGD:3428 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
            GO:GO:0016887 GO:GO:0006511 GO:GO:0000932 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03061 CTD:5701 OrthoDB:EOG4RXZ05
            EMBL:D50694 EMBL:BC061542 EMBL:U13895 IPI:IPI00421600
            RefSeq:NP_150239.1 UniGene:Rn.1202 ProteinModelPortal:Q63347
            IntAct:Q63347 MINT:MINT-1794034 STRING:Q63347 PhosphoSite:Q63347
            PRIDE:Q63347 GeneID:25581 KEGG:rno:25581 InParanoid:Q63347
            NextBio:607227 Genevestigator:Q63347 GermOnline:ENSRNOG00000012026
            Uniprot:Q63347
        Length = 433

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 125/224 (55%), Positives = 168/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGV
Sbjct:   153 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGV 212

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPGTGKTL ARA+A+  DA F+ V+ S ++ KY+GE AR++RE+F  AR  + C+I
Sbjct:   213 LLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLI 272

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPAL+
Sbjct:   273 FFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALM 332

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRKIE  LP+ + R  I KIHA  ++   +I +E + +L
Sbjct:   333 RPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARL 376


>TAIR|locus:2024822 [details] [associations]
            symbol:RPT1A "regulatory particle triple-A 1A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC009324 EMBL:AC024260
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123390 EMBL:AY062860 EMBL:BT000069 IPI:IPI00548766
            PIR:G96577 RefSeq:NP_175778.1 UniGene:At.66918
            ProteinModelPortal:Q9SSB5 SMR:Q9SSB5 IntAct:Q9SSB5 STRING:Q9SSB5
            PaxDb:Q9SSB5 PRIDE:Q9SSB5 EnsemblPlants:AT1G53750.1 GeneID:841812
            KEGG:ath:AT1G53750 GeneFarm:2748 TAIR:At1g53750 InParanoid:Q9SSB5
            KO:K03061 OMA:DIRWELI PhylomeDB:Q9SSB5 ProtClustDB:CLSN2682130
            Genevestigator:Q9SSB5 GermOnline:AT1G53750 Uniprot:Q9SSB5
        Length = 426

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 122/224 (54%), Positives = 170/224 (75%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGV
Sbjct:   146 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGV 205

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             L YGPPGTGKTLLARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CI+
Sbjct:   206 LCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 265

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DE+DAIGG RF +G   D E+QRT++E++NQLDGFD  G +K++MATNRPD LDPALL
Sbjct:   266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALL 325

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRK+E  LP+ +SR +I KIH   +    +I +E + +L
Sbjct:   326 RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARL 369


>ASPGD|ASPL0000034636 [details] [associations]
            symbol:AN2917 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001306
            EMBL:AACD01000051 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061 OMA:DIRWELI
            OrthoDB:EOG4B01XN RefSeq:XP_660521.1 ProteinModelPortal:Q5B963
            STRING:Q5B963 EnsemblFungi:CADANIAT00010170 GeneID:2874156
            KEGG:ani:AN2917.2 Uniprot:Q5B963
        Length = 443

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 123/228 (53%), Positives = 167/228 (73%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             IM  LP ++DP V  M  ED  +V+Y  VGG  +QI +LRE +E+PL++PE F+ +GI P
Sbjct:   159 IMLPLPPKIDPSVTMMTVEDKPDVTYGDVGGCKEQIEKLREVVEMPLLSPERFVNLGIDP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG LLYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  +
Sbjct:   219 PKGALLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
              CIIF DEIDA+GG RF +G   D E+QRT++EL+ QLDGFD  G +K++ ATNRP  LD
Sbjct:   279 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDARGNIKVMFATNRPSTLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             PAL+RPGR+DRKIE  LP+ + R  IL+IHA  ++   +I +E + +L
Sbjct:   339 PALMRPGRIDRKIEFSLPDVEGRANILRIHAKSMSVERDIRWELISRL 386


>CGD|CAL0005689 [details] [associations]
            symbol:RPT1 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0045899 "positive regulation of RNA
            polymerase II transcriptional preinitiation complex assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005689 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000078 EMBL:AACQ01000077
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03061
            RefSeq:XP_715876.1 RefSeq:XP_715926.1 ProteinModelPortal:Q5A2A0
            STRING:Q5A2A0 GeneID:3642412 GeneID:3642461 KEGG:cal:CaO19.441
            KEGG:cal:CaO19.8071 Uniprot:Q5A2A0
        Length = 444

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 121/228 (53%), Positives = 168/228 (73%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I   LP  +DP V  M  E+  +V+YS VGG  +QI +LRE +ELPL++PE F+++GI P
Sbjct:   160 IQLPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKEQIEKLREVVELPLLSPERFVKLGIDP 219

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG+LLYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  +
Sbjct:   220 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK 279

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
              CIIF DE+DAIGG RF +G   D E+QRT++EL+ QLDGFD  G +K++ ATNRP+ LD
Sbjct:   280 ACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD 339

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             PALLRPGR+DRK+E  LP+ + R  I +IH+  ++   +I +E + +L
Sbjct:   340 PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKTMSVEKDIRWELISRL 387


>POMBASE|SPBC16C6.07c [details] [associations]
            symbol:rpt1 "19S proteasome regulatory subunit Rpt1
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC16C6.07c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03061
            OMA:DIRWELI PIR:T39558 RefSeq:NP_596805.1 ProteinModelPortal:O42931
            IntAct:O42931 STRING:O42931 PRIDE:O42931
            EnsemblFungi:SPBC16C6.07c.1 GeneID:2539862 KEGG:spo:SPBC16C6.07c
            OrthoDB:EOG4B01XN NextBio:20801008 Uniprot:O42931
        Length = 438

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 121/228 (53%), Positives = 167/228 (73%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I   LP ++DP V  M  E+  +V+Y  VGG  +QI  LRE +ELPL++PE F+++GI P
Sbjct:   153 IQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDP 212

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG++LYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  +
Sbjct:   213 PKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK 272

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
              CIIF DEIDAIGG RF +G   D E+QRT++EL+ QLDGFD  G +K++ ATNRP+ LD
Sbjct:   273 ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLD 332

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
              AL+RPGR+DRK+E  LP+ + R  IL+IHA  +A   +I +E + +L
Sbjct:   333 EALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARL 380


>SGD|S000001628 [details] [associations]
            symbol:RPT1 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IMP] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IDA] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IPI] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000001628 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 EMBL:BK006944 GO:GO:0006511 GO:GO:0017111
            GO:GO:0045899 GO:GO:0045732 PDB:3VLF PDB:4A3V PDBsum:3VLF
            PDBsum:4A3V GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03061
            OMA:DIRWELI GeneTree:ENSGT00550000074978 OrthoDB:EOG4B01XN
            EMBL:Z22817 EMBL:X73571 EMBL:Z28145 PIR:S34354 RefSeq:NP_012777.1
            ProteinModelPortal:P33299 SMR:P33299 DIP:DIP-2883N IntAct:P33299
            MINT:MINT-612502 STRING:P33299 SWISS-2DPAGE:P33299 PaxDb:P33299
            PeptideAtlas:P33299 PRIDE:P33299 EnsemblFungi:YKL145W GeneID:853712
            KEGG:sce:YKL145W CYGD:YKL145w NextBio:974719 Genevestigator:P33299
            GermOnline:YKL145W Uniprot:P33299
        Length = 467

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 121/224 (54%), Positives = 164/224 (73%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP  +DP V  M  E+  +V+YS VGG  DQI +LRE +ELPL++PE F  +GI PPKG+
Sbjct:   187 LPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGI 246

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++RE+F  AR  + CII
Sbjct:   247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII 306

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DEIDA+GG RF +G   D E+QRT++EL+ QLDGFD  G +K++ ATNRP+ LDPALL
Sbjct:   307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGR+DRK+E  LP+ + R  I +IH+  ++    I +E + +L
Sbjct:   367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRL 410


>DICTYBASE|DDB_G0276917 [details] [associations]
            symbol:psmC2 "26S proteasome ATPase 2 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0000502
            "proteasome complex" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0276917 GO:GO:0005524 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0000502 GO:GO:0006511
            HSSP:Q9WZ49 EMBL:AAFI02000019 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03061 RefSeq:XP_642830.1 ProteinModelPortal:Q86JA1
            STRING:Q86JA1 PRIDE:Q86JA1 EnsemblProtists:DDB0232966
            GeneID:8620693 KEGG:ddi:DDB_G0276917 OMA:HIFTIHA
            ProtClustDB:CLSZ2429177 Uniprot:Q86JA1
        Length = 428

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 120/224 (53%), Positives = 166/224 (74%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP ++D  V  M  E+  +++Y  VGG  +QI +LRE +E+PL++PE F+ +GI PPKGV
Sbjct:   148 LPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGV 207

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             L+YGPPGTGKTL ARA+A+  DA F++V+ S ++ KY+GE AR++R++F  AR  + CII
Sbjct:   208 LMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACII 267

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F DE+DAIGG RF +G   D E+QRT++EL+NQLDGFD  G +K++MATNRPD LDPALL
Sbjct:   268 FFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALL 327

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPGRLDRK+E  LP+ + R  I  IHA  ++   +I +E + +L
Sbjct:   328 RPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARL 371


>FB|FBgn0020369 [details] [associations]
            symbol:Rpt6 "Regulatory particle triple-A ATPase 6"
            species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS;IDA;NAS] [GO:0000502
            "proteasome complex" evidence=NAS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=NAS] [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005875
            "microtubule associated complex" evidence=IDA] [GO:0006974
            "response to DNA damage stimulus" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005875 EMBL:AE014298
            GO:GO:0006508 GO:GO:0006974 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540
            BRENDA:3.4.25.1 KO:K03066 OMA:QNIKVIM GeneTree:ENSGT00550000074947
            EMBL:U97538 EMBL:AF043734 EMBL:AY051732 RefSeq:NP_608447.1
            UniGene:Dm.2162 ProteinModelPortal:O18413 SMR:O18413 DIP:DIP-20087N
            IntAct:O18413 MINT:MINT-759582 STRING:O18413 PaxDb:O18413
            PRIDE:O18413 EnsemblMetazoa:FBtr0077189 GeneID:33105
            KEGG:dme:Dmel_CG1489 CTD:33105 FlyBase:FBgn0020369
            InParanoid:O18413 OrthoDB:EOG47D7XJ PhylomeDB:O18413
            GenomeRNAi:33105 NextBio:781933 Bgee:O18413 GermOnline:CG1489
            Uniprot:O18413
        Length = 405

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 123/212 (58%), Positives = 164/212 (77%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   121 TLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA 180

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + +  F++V  S ++ K+IGE +R++RE+F  AR+H
Sbjct:   181 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREH 240

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   241 APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 300

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             DPALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   301 DPALLRPGRIDRKIEFPPPNEEARLDILKIHS 332


>UNIPROTKB|F1NU79 [details] [associations]
            symbol:PSMC5 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008134 "transcription factor binding"
            evidence=IEA] [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 EMBL:AADN02056696 IPI:IPI00574684
            Ensembl:ENSGALT00000000469 Uniprot:F1NU79
        Length = 412

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   128 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 187

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   188 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 247

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   248 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 307

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   308 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 339


>UNIPROTKB|P62194 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0031531 "thyrotropin-releasing
            hormone receptor binding" evidence=ISS] [GO:0008134 "transcription
            factor binding" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            EMBL:AF069053 EMBL:BC146195 IPI:IPI00717227 RefSeq:NP_776866.1
            UniGene:Bt.8062 ProteinModelPortal:P62194 SMR:P62194 STRING:P62194
            PRIDE:P62194 Ensembl:ENSBTAT00000028048 GeneID:282015
            KEGG:bta:282015 CTD:5705 GeneTree:ENSGT00550000074947
            InParanoid:P62194 OrthoDB:EOG4MKNGF NextBio:20805880
            ArrayExpress:P62194 GO:GO:0031531 Uniprot:P62194
        Length = 406

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   122 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 301

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   302 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 333


>UNIPROTKB|P62195 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0031595
            "nuclear proteasome complex" evidence=IEA] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=TAS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=IPI] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=NAS] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043069 "negative regulation of programmed cell
            death" evidence=NAS] [GO:0022624 "proteasome accessory complex"
            evidence=ISS] [GO:0031410 "cytoplasmic vesicle" evidence=IDA]
            [GO:0003712 "transcription cofactor activity" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:L38810 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0016071 GO:GO:0045892 Reactome:REACT_115566 GO:GO:0045893
            GO:GO:0005654 GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300
            GO:GO:0006977 GO:GO:0042981 GO:GO:0000082 GO:GO:0031410
            GO:GO:0016887 GO:GO:0006366 GO:GO:0043069 GO:GO:0051436
            EMBL:CH471109 GO:GO:0003712 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 EMBL:AC015651 ChiTaRS:PSMC5 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 KO:K03066
            OMA:QNIKVIM CTD:5705 OrthoDB:EOG4MKNGF EMBL:D44467 EMBL:AK290758
            EMBL:AK291878 EMBL:BC001932 EMBL:BC002367 EMBL:AF035309
            IPI:IPI00023919 PIR:S60343 PIR:S65536 RefSeq:NP_001186092.1
            RefSeq:NP_002796.4 UniGene:Hs.79387 PDB:2KRK PDB:3KW6 PDBsum:2KRK
            PDBsum:3KW6 ProteinModelPortal:P62195 SMR:P62195 IntAct:P62195
            MINT:MINT-5004394 STRING:P62195 PhosphoSite:P62195 DMDM:49065819
            PaxDb:P62195 PRIDE:P62195 DNASU:5705 Ensembl:ENST00000310144
            Ensembl:ENST00000375812 Ensembl:ENST00000580864
            Ensembl:ENST00000581882 GeneID:5705 KEGG:hsa:5705 UCSC:uc002jcb.3
            GeneCards:GC17P061904 HGNC:HGNC:9552 HPA:HPA017871 MIM:601681
            neXtProt:NX_P62195 PharmGKB:PA33897 InParanoid:P62195
            PhylomeDB:P62195 EvolutionaryTrace:P62195 GenomeRNAi:5705
            NextBio:22166 ArrayExpress:P62195 Bgee:P62195 CleanEx:HS_PSMC5
            Genevestigator:P62195 GermOnline:ENSG00000087191 Uniprot:P62195
        Length = 406

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   122 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 301

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   302 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 333


>UNIPROTKB|P62197 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9823 "Sus scrofa" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0008134 "transcription factor binding"
            evidence=ISS] [GO:0000502 "proteasome complex" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0045892
            "negative regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0031410 "cytoplasmic vesicle" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0045892 GO:GO:0043161 GO:GO:0031410 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:X89718 EMBL:X89719 RefSeq:NP_999148.1 UniGene:Ssc.5451
            ProteinModelPortal:P62197 SMR:P62197 STRING:P62197 PRIDE:P62197
            Ensembl:ENSSSCT00000018819 GeneID:397043 KEGG:ssc:397043 CTD:397043
            Uniprot:P62197
        Length = 406

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   122 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 301

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   302 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 333


>UNIPROTKB|Q4RG45 [details] [associations]
            symbol:GSTENG00035021001 "Chromosome 2 SCAF15106, whole
            genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008134 "transcription factor binding" evidence=ISS]
            [GO:0031531 "thyrotropin-releasing hormone receptor binding"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0043161 GO:GO:0000502
            GO:GO:0017111 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:CAAE01015106
            ProteinModelPortal:Q4RG45 STRING:Q4RG45 Uniprot:Q4RG45
        Length = 406

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   122 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 301

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   302 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 333


>UNIPROTKB|Q6AZU7 [details] [associations]
            symbol:Q6AZU7 "Putative uncharacterized protein"
            species:8355 "Xenopus laevis" [GO:0000502 "proteasome complex"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008134 "transcription factor
            binding" evidence=ISS] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISS] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            GO:GO:0000502 GO:GO:0017111 GO:GO:0008134 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0031531 EMBL:BC077223
            ProteinModelPortal:Q6AZU7 Uniprot:Q6AZU7
        Length = 414

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   130 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 189

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   190 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 249

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   250 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 309

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   310 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 341


>UNIPROTKB|Q6P380 [details] [associations]
            symbol:psmc5 "Putative uncharacterized protein MGC75584"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0043161 GO:GO:0000502 GO:GO:0017111 GO:GO:0008134
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 CTD:5705 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:BC064153 RefSeq:NP_989358.1 UniGene:Str.3783
            ProteinModelPortal:Q6P380 STRING:Q6P380 GeneID:394988
            KEGG:xtr:394988 Xenbase:XB-GENE-999928 InParanoid:Q6P380
            Uniprot:Q6P380
        Length = 414

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   130 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 189

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   190 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 249

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   250 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 309

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   310 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 341


>MGI|MGI:105047 [details] [associations]
            symbol:Psmc5 "protease (prosome, macropain) 26S subunit,
            ATPase 5" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=ISO] [GO:0005102 "receptor binding" evidence=IPI]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005675 "holo TFIIH complex" evidence=ISA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=ISO;ISA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
            [GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0031410 "cytoplasmic vesicle"
            evidence=ISO] [GO:0031531 "thyrotropin-releasing hormone receptor
            binding" evidence=ISO] [GO:0031595 "nuclear proteasome complex"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0045892 "negative regulation
            of transcription, DNA-dependent" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:105047
            GO:GO:0005524 GO:GO:0005737 GO:GO:0045892 GO:GO:0043161
            GO:GO:0031410 GO:GO:0017111 GO:GO:0008134 GO:GO:0005675
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            KO:K03066 OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947
            OrthoDB:EOG4MKNGF GO:GO:0031531 EMBL:Z54219 EMBL:AK010505
            EMBL:AK135451 EMBL:AK145703 IPI:IPI00135640 PIR:S61923
            RefSeq:NP_032976.1 UniGene:Mm.272361 ProteinModelPortal:P62196
            SMR:P62196 IntAct:P62196 STRING:P62196 PhosphoSite:P62196
            REPRODUCTION-2DPAGE:IPI00135640 REPRODUCTION-2DPAGE:P62196
            PaxDb:P62196 PRIDE:P62196 Ensembl:ENSMUST00000021049 GeneID:19184
            KEGG:mmu:19184 InParanoid:P62196 NextBio:295882 Bgee:P62196
            Genevestigator:P62196 GermOnline:ENSMUSG00000020708 Uniprot:P62196
        Length = 406

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   122 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 301

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   302 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 333


>RGD|708376 [details] [associations]
            symbol:Psmc5 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 5" species:10116 "Rattus norvegicus" [GO:0000502
            "proteasome complex" evidence=ISO;ISS] [GO:0005102 "receptor
            binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;ISS] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0008134 "transcription factor binding" evidence=ISO;ISS]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0031410 "cytoplasmic vesicle"
            evidence=IEA;ISO] [GO:0031531 "thyrotropin-releasing hormone
            receptor binding" evidence=ISO;ISS] [GO:0031595 "nuclear proteasome
            complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISO;ISS] [GO:0045892 "negative
            regulation of transcription, DNA-dependent" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:708376 GO:GO:0005524
            GO:GO:0005737 GO:GO:0045892 GO:GO:0043161 GO:GO:0031410
            GO:GO:0016887 GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03066
            OMA:QNIKVIM CTD:5705 GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF
            GO:GO:0031531 EMBL:D83521 EMBL:AB000491 EMBL:AB000493 EMBL:BC058462
            IPI:IPI00213587 PIR:T43799 RefSeq:NP_112411.1 UniGene:Rn.10972
            ProteinModelPortal:P62198 SMR:P62198 IntAct:P62198 STRING:P62198
            PhosphoSite:P62198 World-2DPAGE:0004:P62198 PRIDE:P62198
            Ensembl:ENSRNOT00000013997 GeneID:81827 KEGG:rno:81827
            UCSC:RGD:708376 InParanoid:P62198 NextBio:615767
            ArrayExpress:P62198 Genevestigator:P62198
            GermOnline:ENSRNOG00000010038 GO:GO:0031595 Uniprot:P62198
        Length = 406

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   122 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 301

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   302 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 333


>ZFIN|ZDB-GENE-030131-6547 [details] [associations]
            symbol:psmc5 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 5" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0031531
            "thyrotropin-releasing hormone receptor binding" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=IEA;ISS] [GO:0008134
            "transcription factor binding" evidence=ISS] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-6547 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0000502 GO:GO:0017111
            GO:GO:0008134 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM CTD:5705
            GeneTree:ENSGT00550000074947 OrthoDB:EOG4MKNGF GO:GO:0031531
            EMBL:CU459020 EMBL:BC078375 IPI:IPI00482097 RefSeq:NP_001003740.1
            UniGene:Dr.75934 STRING:Q6AZC1 Ensembl:ENSDART00000106191
            GeneID:445285 KEGG:dre:445285 InParanoid:Q6AZC1 NextBio:20832032
            Uniprot:Q6AZC1
        Length = 406

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   122 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 181

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   182 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 241

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   242 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 301

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   302 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 333


>POMBASE|SPBC23G7.12c [details] [associations]
            symbol:rpt6 "19S proteasome regulatory subunit Rpt6
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0007346 "regulation of mitotic cell
            cycle" evidence=IC] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC23G7.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0007346 GO:GO:0005635 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 KO:K03066
            OMA:TEILRIH EMBL:U02280 PIR:S45176 RefSeq:NP_595870.1
            ProteinModelPortal:P41836 IntAct:P41836 STRING:P41836 PRIDE:P41836
            EnsemblFungi:SPBC23G7.12c.1 GeneID:2540487 KEGG:spo:SPBC23G7.12c
            OrthoDB:EOG44N21J NextBio:20801614 Uniprot:P41836
        Length = 403

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 125/228 (54%), Positives = 170/228 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             +++ LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  
Sbjct:   119 LIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQ 178

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG+LLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H 
Sbjct:   179 PKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHA 238

Query:   126 PCIIFMDEIDAIGGRRF-SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
             P IIFMDEID+IG  R  S G S D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   239 PSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 298

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             DPALLRPGR+DRKIE P P+ ++R EIL+IH+  +     ID +++ +
Sbjct:   299 DPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAE 346


>UNIPROTKB|Q58576 [details] [associations]
            symbol:pan "Proteasome-activating nucleotidase"
            species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0003924
            "GTPase activity" evidence=IDA] [GO:0006184 "GTP catabolic process"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0010498 "proteasomal protein catabolic process" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0022623
            "proteasome-activating nucleotidase complex" evidence=IDA]
            [GO:0043273 "CTPase activity" evidence=IDA] [GO:0043335 "protein
            unfolding" evidence=IDA] HAMAP:MF_00553 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0003924 GO:GO:0016887 GO:GO:0010498
            GO:GO:0022623 GO:GO:0043335 GO:GO:0043273 EMBL:L77117
            GenomeReviews:L77117_GR PIR:G64446 RefSeq:NP_248170.1 PDB:3H43
            PDB:3H4M PDB:3IPM PDBsum:3H43 PDBsum:3H4M PDBsum:3IPM
            ProteinModelPortal:Q58576 SMR:Q58576 PRIDE:Q58576 GeneID:1452074
            KEGG:mja:MJ_1176 eggNOG:COG1222 KO:K03420 OMA:RVNERKA
            ProtClustDB:PRK03992 EvolutionaryTrace:Q58576 InterPro:IPR023501
            TIGRFAMs:TIGR01242 Uniprot:Q58576
        Length = 430

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 123/233 (52%), Positives = 170/233 (72%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             TLT++  LP   D     M  ++  NV Y  +GGL  Q++E+RE +ELPL +PELF +VG
Sbjct:   141 TLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG 200

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             I+PPKG+LLYGPPGTGKTLLA+A+A+  +A F++VV S ++ K+IGE A L++++F  A+
Sbjct:   201 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK 260

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             +  P IIF+DEIDAI  +R    T  DRE+QRTLM+LL ++DGFD  G VK+I ATNRPD
Sbjct:   261 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 320

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             +LDPA+LRPGR DR IE+P P+E+ R+EILKIH   +    +++ E + K+ E
Sbjct:   321 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTE 373


>TAIR|locus:2147670 [details] [associations]
            symbol:RPT6A "regulatory particle triple-A ATPase 6A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030163
            GO:GO:0000502 HSSP:Q01853 GO:GO:0017111 EMBL:AF296836
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123395 EMBL:AB044348 EMBL:AY065174 EMBL:BT009668
            IPI:IPI00542662 RefSeq:NP_568389.1 UniGene:At.10507
            ProteinModelPortal:Q9C5U3 SMR:Q9C5U3 IntAct:Q9C5U3 STRING:Q9C5U3
            PaxDb:Q9C5U3 PRIDE:Q9C5U3 EnsemblPlants:AT5G19990.1 GeneID:832121
            KEGG:ath:AT5G19990 TAIR:At5g19990 InParanoid:Q9C5U3 KO:K03066
            OMA:QNIKVIM PhylomeDB:Q9C5U3 ProtClustDB:CLSN2687185 Uniprot:Q9C5U3
        Length = 419

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 125/224 (55%), Positives = 166/224 (74%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGV
Sbjct:   139 LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGV 198

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H P II
Sbjct:   199 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSII 258

Query:   130 FMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPAL 188
             FMDEID+IG  R   G+ + D E+QRT++ELLNQLDGF+   K+K++MATNR D+LD AL
Sbjct:   259 FMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL 318

Query:   189 LRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             LRPGR+DRKIE P PNE+SR +ILKIH+  +     ID + + +
Sbjct:   319 LRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAE 362


>TAIR|locus:2147685 [details] [associations]
            symbol:AT5G20000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;TAS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            GO:GO:0017111 EMBL:AF296836 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 ProtClustDB:CLSN2687185
            EMBL:AY039965 EMBL:AY079403 EMBL:AK226206 EMBL:AY087503
            IPI:IPI00530138 RefSeq:NP_197500.1 UniGene:At.51251
            ProteinModelPortal:Q94BQ2 SMR:Q94BQ2 IntAct:Q94BQ2 STRING:Q94BQ2
            PaxDb:Q94BQ2 PRIDE:Q94BQ2 EnsemblPlants:AT5G20000.1 GeneID:832122
            KEGG:ath:AT5G20000 GeneFarm:1515 TAIR:At5g20000 InParanoid:Q94BQ2
            OMA:TEILRIH PhylomeDB:Q94BQ2 Uniprot:Q94BQ2
        Length = 419

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 125/224 (55%), Positives = 166/224 (74%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGV
Sbjct:   139 LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGV 198

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H P II
Sbjct:   199 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSII 258

Query:   130 FMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPAL 188
             FMDEID+IG  R   G+ + D E+QRT++ELLNQLDGF+   K+K++MATNR D+LD AL
Sbjct:   259 FMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQAL 318

Query:   189 LRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             LRPGR+DRKIE P PNE+SR +ILKIH+  +     ID + + +
Sbjct:   319 LRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAE 362


>FB|FBgn0039788 [details] [associations]
            symbol:Rpt6R "Regulatory particle triple-A ATPase 6-related"
            species:7227 "Drosophila melanogaster" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005875 "microtubule associated complex"
            evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
            GO:GO:0022008 GO:GO:0006200 GO:GO:0016887 GO:GO:0030163 HSSP:Q01853
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            GeneTree:ENSGT00550000074947 EMBL:AY119229 RefSeq:NP_651811.1
            UniGene:Dm.13760 SMR:Q9VA54 IntAct:Q9VA54 MINT:MINT-308887
            STRING:Q9VA54 EnsemblMetazoa:FBtr0085680 GeneID:43635
            KEGG:dme:Dmel_CG2241 UCSC:CG2241-RA CTD:43635 FlyBase:FBgn0039788
            InParanoid:Q9VA54 OMA:NDAYSAG OrthoDB:EOG41JWTK GenomeRNAi:43635
            NextBio:834976 Uniprot:Q9VA54
        Length = 399

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 125/212 (58%), Positives = 163/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  ML E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   116 TLHKILPNKVDPLVSLMLVEKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGIT 175

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + +  F++V  S ++ K+IGE +R++RE+F  AR+H
Sbjct:   176 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREH 235

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG  R   GT  D E+QRT++ELLNQLDGF+    +K+IMATNR DVL
Sbjct:   236 APSIIFMDEIDSIGSARLETGTG-DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVL 294

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   295 DQALLRPGRIDRKIEFPPPNEEARLDILKIHS 326


>GENEDB_PFALCIPARUM|PF10_0081 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory
            subunit 4, putative" species:5833 "Plasmodium falciparum"
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006508
            "proteolysis" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 122/229 (53%), Positives = 170/229 (74%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             T +++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +G
Sbjct:   164 TNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIG 223

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             IKPPKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+REMF  A 
Sbjct:   224 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAE 283

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR D
Sbjct:   284 EHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRID 343

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
              LDPAL+RPGR+DRKI++P P+ +++  I +IH + +    ++D E  V
Sbjct:   344 SLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFV 392


>UNIPROTKB|Q8IJW0 [details] [associations]
            symbol:PF10_0081 "26S proteasome regulatory subunit 4,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006508 "proteolysis"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0004175 GO:GO:0030163 GO:GO:0017111 EMBL:AE014185
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            ProtClustDB:PTZ00361 GO:GO:0005838 RefSeq:XP_001347366.2
            ProteinModelPortal:Q8IJW0 IntAct:Q8IJW0 MINT:MINT-1726172
            PRIDE:Q8IJW0 EnsemblProtists:PF10_0081:mRNA GeneID:810239
            KEGG:pfa:PF10_0081 EuPathDB:PlasmoDB:PF3D7_1008400 Uniprot:Q8IJW0
        Length = 448

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 122/229 (53%), Positives = 170/229 (74%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             T +++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +G
Sbjct:   164 TNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIG 223

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             IKPPKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+REMF  A 
Sbjct:   224 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAE 283

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             +H P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR D
Sbjct:   284 EHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRID 343

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
              LDPAL+RPGR+DRKI++P P+ +++  I +IH + +    ++D E  V
Sbjct:   344 SLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFV 392


>UNIPROTKB|H0YJC0 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
            EMBL:AL133453 HGNC:HGNC:9553 Ensembl:ENST00000556813 Uniprot:H0YJC0
        Length = 262

 Score = 617 (222.3 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 119/137 (86%), Positives = 126/137 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:   102 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 161

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   162 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 221

Query:   121 ARDHQPCIIFMDEIDAI 137
             ARDHQPCIIFMDEIDAI
Sbjct:   222 ARDHQPCIIFMDEIDAI 238

 Score = 45 (20.9 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query:   225 IDYEAVVKLAE 235
             IDYEA+VKL++
Sbjct:   238 IDYEAIVKLSD 248


>GENEDB_PFALCIPARUM|PFL2345c [details] [associations]
            symbol:PFL2345c "tat-binding protein homolog"
            species:5833 "Plasmodium falciparum" [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0003712 "transcription cofactor activity" evidence=ISS]
            [GO:0000502 "proteasome complex" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:AE014188
            GO:GO:0006511 HSSP:Q01853 GO:GO:0017111 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM ProtClustDB:CLSZ2429412
            RefSeq:XP_001350873.1 ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5
            MINT:MINT-1544609 PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA
            GeneID:811521 KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900
            Uniprot:Q8I4U5
        Length = 435

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 123/209 (58%), Positives = 159/209 (76%)

Query:     8 RALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK 67
             + LP +VDP+V  M  E   + +Y  VGGL  Q++E++E IELP+ +PE+F  +GI  PK
Sbjct:   155 KILPSKVDPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPK 214

Query:    68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPC 127
             GVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H P 
Sbjct:   215 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 274

Query:   128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPA 187
             IIFMDEID+IG +R  EG   D E+QRT+MELLNQLDGF+    +K+IM TNR D+LD A
Sbjct:   275 IIFMDEIDSIGSQRI-EGEHGDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEA 333

Query:   188 LLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             LLRPGR+DRKIE P PN ++RMEILKIH+
Sbjct:   334 LLRPGRIDRKIEFPNPNVEARMEILKIHS 362


>UNIPROTKB|Q8I4U5 [details] [associations]
            symbol:PFL2345c "Tat-binding protein homolog" species:36329
            "Plasmodium falciparum 3D7" [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:AE014188 GO:GO:0006511 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM
            ProtClustDB:CLSZ2429412 RefSeq:XP_001350873.1
            ProteinModelPortal:Q8I4U5 IntAct:Q8I4U5 MINT:MINT-1544609
            PRIDE:Q8I4U5 EnsemblProtists:PFL2345c:mRNA GeneID:811521
            KEGG:pfa:PFL2345c EuPathDB:PlasmoDB:PF3D7_1248900 Uniprot:Q8I4U5
        Length = 435

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 123/209 (58%), Positives = 159/209 (76%)

Query:     8 RALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK 67
             + LP +VDP+V  M  E   + +Y  VGGL  Q++E++E IELP+ +PE+F  +GI  PK
Sbjct:   155 KILPSKVDPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPVKHPEIFESLGISQPK 214

Query:    68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPC 127
             GVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H P 
Sbjct:   215 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 274

Query:   128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPA 187
             IIFMDEID+IG +R  EG   D E+QRT+MELLNQLDGF+    +K+IM TNR D+LD A
Sbjct:   275 IIFMDEIDSIGSQRI-EGEHGDSEVQRTMMELLNQLDGFESTQNIKVIMCTNRIDILDEA 333

Query:   188 LLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             LLRPGR+DRKIE P PN ++RMEILKIH+
Sbjct:   334 LLRPGRIDRKIEFPNPNVEARMEILKIHS 362


>UNIPROTKB|F1NSP7 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 IPI:IPI00585304 EMBL:AADN02003628
            EMBL:AADN02003629 Ensembl:ENSGALT00000017367 ArrayExpress:F1NSP7
            Uniprot:F1NSP7
        Length = 439

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   158 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 217

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   218 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 277

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   278 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 337

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   338 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELI 383


>UNIPROTKB|F1NTZ4 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 EMBL:AADN02003628 EMBL:AADN02003629
            IPI:IPI00821206 Ensembl:ENSGALT00000037629 ArrayExpress:F1NTZ4
            Uniprot:F1NTZ4
        Length = 438

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   157 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 216

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   217 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 276

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   277 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 336

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   337 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELI 382


>UNIPROTKB|P46470 [details] [associations]
            symbol:psmc5 "26S protease regulatory subunit 8"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 KO:K03066 CTD:5705 EMBL:X81986 RefSeq:NP_001081635.1
            UniGene:Xl.45 ProteinModelPortal:P46470 PRIDE:P46470 GeneID:397968
            KEGG:xla:397968 Uniprot:P46470
        Length = 461

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 122/212 (57%), Positives = 162/212 (76%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE F  +GI 
Sbjct:   117 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIA 176

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   177 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 236

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIFMDEID+IG R    G+  D E+QRT++ELLNQLDGF+    +K+IMATNR D+L
Sbjct:   237 APSIIFMDEIDSIGSR-LEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 295

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             D ALLRPGR+DRKIE P PNE++R++ILKIH+
Sbjct:   296 DSALLRPGRIDRKIEFPPPNEEARLDILKIHS 327


>GENEDB_PFALCIPARUM|PF13_0063 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory
            subunit 7, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0004175 "endopeptidase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0004175 GO:GO:0006511
            GO:GO:0017111 EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0005838 KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177
            RefSeq:XP_001349843.2 ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3
            MINT:MINT-1698409 PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA
            GeneID:814041 KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500
            Uniprot:Q8IEK3
        Length = 420

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/232 (50%), Positives = 166/232 (71%)

Query:     2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRV 61
             T   I   LP ++DP V  M  E+  +++Y+ +GG  +Q+ +LRE +E+PL+ PE F+ +
Sbjct:   132 TKYKIQILLPPKIDPSVTMMTVEEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTL 191

Query:    62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYA 121
             GI PPKGVLLYGPPGTGKTL ARAIA+  DA F+ V+ S ++ KY+GE AR++RE+F  A
Sbjct:   192 GIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA 251

Query:   122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181
             +  + CI+F+DE+DAIGG R  E    D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct:   252 KSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRP 311

Query:   182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             D LD AL+RPGR+DR+IE  LP+ + R  I KIHA  +    ++ +E + +L
Sbjct:   312 DTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLARL 363


>UNIPROTKB|Q90732 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9031 "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 EMBL:U60187
            IPI:IPI00585304 PIR:S74197 RefSeq:NP_990289.1 UniGene:Gga.1071
            ProteinModelPortal:Q90732 STRING:Q90732 PRIDE:Q90732 GeneID:395804
            KEGG:gga:395804 CTD:5700 InParanoid:Q90732 OrthoDB:EOG4D7Z5Q
            NextBio:20815872 Uniprot:Q90732
        Length = 440

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHG 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELI 384


>UNIPROTKB|A4FUZ3 [details] [associations]
            symbol:PSMC1 "Proteasome (Prosome, macropain) 26S subunit,
            ATPase, 1" species:9913 "Bos taurus" [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            OMA:FIRNQER GeneTree:ENSGT00550000074818 OrthoDB:EOG4D7Z5Q
            EMBL:DAAA02030032 EMBL:BC123487 IPI:IPI00695877 UniGene:Bt.12340
            SMR:A4FUZ3 STRING:A4FUZ3 Ensembl:ENSBTAT00000007135
            InParanoid:A4FUZ3 Uniprot:A4FUZ3
        Length = 440

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLI 384


>UNIPROTKB|F1PQ40 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:AAEX03005924
            RefSeq:NP_001238880.1 ProteinModelPortal:F1PQ40
            Ensembl:ENSCAFT00000027737 GeneID:100688636 KEGG:cfa:100688636
            Uniprot:F1PQ40
        Length = 440

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLI 384


>UNIPROTKB|B4DR63 [details] [associations]
            symbol:PSMC1 "cDNA FLJ58247, highly similar to 26S protease
            regulatory subunit 4" species:9606 "Homo sapiens" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0006508 GO:GO:0030163 GO:GO:0017111 GO:GO:0008233
            EMBL:AL161662 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            UniGene:Hs.356654 HGNC:HGNC:9547 EMBL:AL355074 EMBL:AK299121
            IPI:IPI01015427 SMR:B4DR63 STRING:B4DR63 Ensembl:ENST00000543772
            Uniprot:B4DR63
        Length = 367

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:    86 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 145

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   146 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 205

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   206 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 265

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   266 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLI 311


>UNIPROTKB|P62191 [details] [associations]
            symbol:PSMC1 "26S protease regulatory subunit 4"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0022624 "proteasome accessory complex" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0000502 "proteasome
            complex" evidence=NAS] [GO:0000075 "cell cycle checkpoint"
            evidence=TAS] [GO:0000082 "G1/S transition of mitotic cell cycle"
            evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
            evidence=TAS] [GO:0000209 "protein polyubiquitination"
            evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell cycle"
            evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
            [GO:0002474 "antigen processing and presentation of peptide antigen
            via MHC class I" evidence=TAS] [GO:0002479 "antigen processing and
            presentation of exogenous peptide antigen via MHC class I,
            TAP-dependent" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006521
            "regulation of cellular amino acid metabolic process" evidence=TAS]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_13505
            Reactome:REACT_578 Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_6850 Reactome:REACT_111217 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005829
            GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
            Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
            Reactome:REACT_115566 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981 GO:GO:0000082
            GO:GO:0016887 GO:GO:0051436 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            OMA:FIRNQER CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:L02426 EMBL:CR457044
            EMBL:BC000512 EMBL:BC016368 EMBL:BC073818 IPI:IPI00011126
            PIR:A44468 RefSeq:NP_002793.2 UniGene:Hs.356654
            ProteinModelPortal:P62191 SMR:P62191 IntAct:P62191
            MINT:MINT-1141832 STRING:P62191 PhosphoSite:P62191 DMDM:49065817
            PaxDb:P62191 PeptideAtlas:P62191 PRIDE:P62191 DNASU:5700
            Ensembl:ENST00000261303 GeneID:5700 KEGG:hsa:5700 UCSC:uc001xyf.3
            GeneCards:GC14P090722 H-InvDB:HIX0030744 HGNC:HGNC:9547
            HPA:HPA000872 MIM:602706 neXtProt:NX_P62191 PharmGKB:PA33892
            InParanoid:P62191 PhylomeDB:P62191 GenomeRNAi:5700 NextBio:22146
            ArrayExpress:P62191 Bgee:P62191 CleanEx:HS_PSMC1
            Genevestigator:P62191 GermOnline:ENSG00000100764 Uniprot:P62191
        Length = 440

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLI 384


>UNIPROTKB|F2Z5J1 [details] [associations]
            symbol:PSMC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 KO:K03062 OMA:FIRNQER
            GeneTree:ENSGT00550000074818 CTD:5700 EMBL:CT737375
            RefSeq:NP_001231080.1 UniGene:Ssc.1911 ProteinModelPortal:F2Z5J1
            SMR:F2Z5J1 PRIDE:F2Z5J1 Ensembl:ENSSSCT00000002703 GeneID:100155274
            KEGG:ssc:100155274 Uniprot:F2Z5J1
        Length = 440

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLI 384


>UNIPROTKB|Q8IEK3 [details] [associations]
            symbol:PF13_0063 "26S proteasome regulatory subunit 7,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004175
            "endopeptidase activity" evidence=ISS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0004175 GO:GO:0006511 GO:GO:0017111
            EMBL:AL844509 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0005838
            KO:K03061 OMA:DIRWELI ProtClustDB:CLSZ2429177 RefSeq:XP_001349843.2
            ProteinModelPortal:Q8IEK3 IntAct:Q8IEK3 MINT:MINT-1698409
            PRIDE:Q8IEK3 EnsemblProtists:PF13_0063:mRNA GeneID:814041
            KEGG:pfa:PF13_0063 EuPathDB:PlasmoDB:PF3D7_1311500 Uniprot:Q8IEK3
        Length = 420

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/232 (50%), Positives = 166/232 (71%)

Query:     2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRV 61
             T   I   LP ++DP V  M  E+  +++Y+ +GG  +Q+ +LRE +E+PL+ PE F+ +
Sbjct:   132 TKYKIQILLPPKIDPSVTMMTVEEKPDITYNDIGGCKEQLEKLREVVEMPLLQPERFVTL 191

Query:    62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYA 121
             GI PPKGVLLYGPPGTGKTL ARAIA+  DA F+ V+ S ++ KY+GE AR++RE+F  A
Sbjct:   192 GIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA 251

Query:   122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181
             +  + CI+F+DE+DAIGG R  E    D E+QRT++E++NQLDGFD  G +K++MATNRP
Sbjct:   252 KSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRP 311

Query:   182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             D LD AL+RPGR+DR+IE  LP+ + R  I KIHA  +    ++ +E + +L
Sbjct:   312 DTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLARL 363


>MGI|MGI:106054 [details] [associations]
            symbol:Psmc1 "protease (prosome, macropain) 26S subunit,
            ATPase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017025
            "TBP-class protein binding" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:106054
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER CTD:5700
            OrthoDB:EOG4D7Z5Q EMBL:U39302 EMBL:BC003860 IPI:IPI00133428
            RefSeq:NP_032973.1 UniGene:Mm.157105 ProteinModelPortal:P62192
            SMR:P62192 IntAct:P62192 STRING:P62192 PhosphoSite:P62192
            REPRODUCTION-2DPAGE:IPI00133428 PaxDb:P62192 PRIDE:P62192
            Ensembl:ENSMUST00000021595 GeneID:19179 KEGG:mmu:19179
            InParanoid:P62192 NextBio:295866 Bgee:P62192 Genevestigator:P62192
            GermOnline:ENSMUSG00000021178 Uniprot:P62192
        Length = 440

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLI 384


>RGD|621097 [details] [associations]
            symbol:Psmc1 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 1" species:10116 "Rattus norvegicus" [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=IEA;ISO] [GO:0006200 "ATP catabolic process"
            evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0017025 "TBP-class
            protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621097 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 CTD:5700 OrthoDB:EOG4D7Z5Q EMBL:D50696
            EMBL:BC063157 IPI:IPI00211733 RefSeq:NP_476464.1 UniGene:Rn.10526
            ProteinModelPortal:P62193 SMR:P62193 IntAct:P62193 STRING:P62193
            PRIDE:P62193 Ensembl:ENSRNOT00000005329 GeneID:117263
            KEGG:rno:117263 UCSC:RGD:621097 InParanoid:P62193 NextBio:620148
            Genevestigator:P62193 GermOnline:ENSRNOG00000003951 Uniprot:P62193
        Length = 440

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 117/226 (51%), Positives = 168/226 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLI 384


>WB|WBGene00004506 [details] [associations]
            symbol:rpt-6 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040010 "positive regulation of growth rate" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
            [GO:0007091 "metaphase/anaphase transition of mitotic cell cycle"
            evidence=IMP] [GO:0008340 "determination of adult lifespan"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
            GO:GO:0040011 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111 EMBL:Z98866
            GO:GO:0007091 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            PIR:T27048 RefSeq:NP_499609.1 ProteinModelPortal:Q9XTT9 SMR:Q9XTT9
            DIP:DIP-27139N IntAct:Q9XTT9 MINT:MINT-210855 STRING:Q9XTT9
            PaxDb:Q9XTT9 EnsemblMetazoa:Y49E10.1.1 EnsemblMetazoa:Y49E10.1.2
            GeneID:176661 KEGG:cel:CELE_Y49E10.1 UCSC:Y49E10.1 CTD:176661
            WormBase:Y49E10.1 InParanoid:Q9XTT9 OMA:IDDQIRE NextBio:893504
            Uniprot:Q9XTT9
        Length = 416

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 120/209 (57%), Positives = 160/209 (76%)

Query:     8 RALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK 67
             + LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PK
Sbjct:   135 KLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 194

Query:    68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPC 127
             GVLL+GPPGTGKTLLARA+A + +  F++V  S ++ K+IGE AR++RE+F  AR+H P 
Sbjct:   195 GVLLFGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 254

Query:   128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPA 187
             IIFMDEID+IG  R    +  D E+QRT++ELLNQLDGF+    +K+IMATNR D+LDPA
Sbjct:   255 IIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 314

Query:   188 LLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             LLRPGR+DRKIE P P+E++R +ILKIH+
Sbjct:   315 LLRPGRIDRKIEFPAPDEKARADILKIHS 343


>FB|FBgn0015282 [details] [associations]
            symbol:Rpt2 "Regulatory particle triple-A ATPase 2"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS;IDA;NAS] [GO:0000502 "proteasome complex"
            evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=NAS] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=IDA]
            [GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0009987 "cellular process" evidence=IMP] [GO:0007052 "mitotic
            spindle organization" evidence=IMP] [GO:0000022 "mitotic spindle
            elongation" evidence=IMP] [GO:0008283 "cell proliferation"
            evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:AE014297 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008283 GO:GO:0006508 GO:GO:0006974
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000022
            eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0008540 KO:K03062
            OMA:FIRNQER GeneTree:ENSGT00550000074818 EMBL:U39303 EMBL:AY058759
            RefSeq:NP_524469.2 UniGene:Dm.2368 ProteinModelPortal:P48601
            SMR:P48601 DIP:DIP-17276N IntAct:P48601 MINT:MINT-817128
            STRING:P48601 PaxDb:P48601 PRIDE:P48601 EnsemblMetazoa:FBtr0084520
            GeneID:42828 KEGG:dme:Dmel_CG5289 CTD:42828 FlyBase:FBgn0015282
            InParanoid:P48601 OrthoDB:EOG4R4XJ3 PhylomeDB:P48601
            BRENDA:3.4.25.1 ChiTaRS:Pros26.4 GenomeRNAi:42828 NextBio:830777
            Bgee:P48601 GermOnline:CG5289 Uniprot:P48601
        Length = 439

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 116/226 (51%), Positives = 166/226 (73%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL  QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   158 VVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKP 217

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   218 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 277

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   278 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 337

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I  IH + +    +++   ++
Sbjct:   338 PALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELI 383


>DICTYBASE|DDB_G0292382 [details] [associations]
            symbol:psmC5 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS] [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0292382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GenomeReviews:CM000155_GR GO:GO:0006508 GO:GO:0004175 GO:GO:0030163
            GO:GO:0017111 EMBL:AAFI02000190 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0005838 KO:K03066 EMBL:L16579 PIR:JN0610 RefSeq:XP_629632.1
            ProteinModelPortal:P34124 STRING:P34124 EnsemblProtists:DDB0216230
            GeneID:8628696 KEGG:ddi:DDB_G0292382 OMA:RAALKHE
            ProtClustDB:CLSZ2429412 Uniprot:P34124
        Length = 403

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 121/213 (56%), Positives = 159/213 (74%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ R LP ++DP+V  M  E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   118 TLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIA 177

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H
Sbjct:   178 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREH 237

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSA-DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183
              P IIFMDEID+IG  R   G+   D E+QRT++ELLNQLDGF+    +K++M TNR D+
Sbjct:   238 APSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDI 297

Query:   184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             LDPALLRPGR+DRKIE P P +  R++ILKIH+
Sbjct:   298 LDPALLRPGRIDRKIEFPNPGDAGRLDILKIHS 330


>ASPGD|ASPL0000064945 [details] [associations]
            symbol:AN6988 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0006338 "chromatin remodeling"
            evidence=IEA] [GO:0032968 "positive regulation of transcription
            elongation from RNA polymerase II promoter" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001304 GO:GO:0030163 GO:GO:0017111
            EMBL:AACD01000117 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 OMA:QNIKVIM OrthoDB:EOG44N21J
            RefSeq:XP_664592.1 ProteinModelPortal:Q5AXJ2 STRING:Q5AXJ2
            EnsemblFungi:CADANIAT00000491 GeneID:2869968 KEGG:ani:AN6988.2
            Uniprot:Q5AXJ2
        Length = 389

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 120/209 (57%), Positives = 157/209 (75%)

Query:     8 RALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK 67
             + LP  VDP+V  M+ E   + +Y  +GGL  QI+E++E IEL L +PELF  +GI  PK
Sbjct:   108 KMLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEIKEVIELGLKHPELFESLGIAQPK 167

Query:    68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPC 127
             GVLLYGPPGTGKTLLARA+A + D  F++V  S ++ KYIGE +R++RE+F  AR+H P 
Sbjct:   168 GVLLYGPPGTGKTLLARAVAHHTDCRFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 227

Query:   128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPA 187
             IIFMDEID+IG  R     S D E+QRT++ELLNQLDGF+    +K+IMATNR D+LDPA
Sbjct:   228 IIFMDEIDSIGSSRIDSAGSGDSEVQRTMLELLNQLDGFEPTKNIKIIMATNRLDILDPA 287

Query:   188 LLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             LLRPGR+DRKIE P P+ ++R +IL+IH+
Sbjct:   288 LLRPGRIDRKIEFPPPSVEARADILRIHS 316


>ZFIN|ZDB-GENE-040625-69 [details] [associations]
            symbol:psmc1b "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1b" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-040625-69 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            KO:K03062 GeneTree:ENSGT00550000074818 EMBL:AL935145 EMBL:BC071538
            IPI:IPI00495318 RefSeq:NP_001002091.1 UniGene:Dr.1187 STRING:Q6IQ72
            Ensembl:ENSDART00000063950 GeneID:415181 KEGG:dre:415181 CTD:415181
            InParanoid:Q6IQ72 NextBio:20818851 Uniprot:Q6IQ72
        Length = 440

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 116/226 (51%), Positives = 167/226 (73%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYG PGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVAEDVSLDDLI 384


>WB|WBGene00018991 [details] [associations]
            symbol:F56F11.4 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0040017 "positive
            regulation of locomotion" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0002119
            GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03066 GeneTree:ENSGT00550000074947
            EMBL:FO081497 RefSeq:NP_741098.1 ProteinModelPortal:Q8MXF1
            SMR:Q8MXF1 STRING:Q8MXF1 PaxDb:Q8MXF1 PRIDE:Q8MXF1
            EnsemblMetazoa:F56F11.4b GeneID:175403 KEGG:cel:CELE_F56F11.4
            UCSC:F56F11.4b CTD:175403 WormBase:F56F11.4b InParanoid:Q8MXF1
            OMA:TITISEN NextBio:888008 ArrayExpress:Q8MXF1 Uniprot:Q8MXF1
        Length = 432

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 121/211 (57%), Positives = 158/211 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I   LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  
Sbjct:   149 IHEVLPSKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQ 208

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVLLYGPPGTGKTLLARA+A + +  F++V  S ++ K+IGE AR++RE+F  AR+H 
Sbjct:   209 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHA 268

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIFMDEID+IG  R       D E+QRT++ELLNQLDGF+    +K+IMATNR D+LD
Sbjct:   269 PSIIFMDEIDSIGSSRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 328

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
              ALLRPGR+DRKIE P P+E++R +ILKIH+
Sbjct:   329 SALLRPGRIDRKIEFPAPDEKARAQILKIHS 359


>ZFIN|ZDB-GENE-030131-8730 [details] [associations]
            symbol:psmc1a "proteasome (prosome, macropain) 26S
            subunit, ATPase, 1a" species:7955 "Danio rerio" [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-8730 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 HSSP:P43773
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03062 EMBL:BC049471
            IPI:IPI00500900 RefSeq:NP_956327.1 UniGene:Dr.76288
            ProteinModelPortal:Q7ZWD1 STRING:Q7ZWD1 GeneID:336786
            KEGG:dre:336786 CTD:336786 InParanoid:Q7ZWD1 NextBio:20811903
            ArrayExpress:Q7ZWD1 Uniprot:Q7ZWD1
        Length = 440

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 116/226 (51%), Positives = 166/226 (73%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ +GGL  QI+E++ES+ELPL +PE +  +GIKP
Sbjct:   159 VIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDSQIQEIKESVELPLTHPEYYEEMGIKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYG PGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A +H 
Sbjct:   219 PKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR + LD
Sbjct:   279 PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    ++  + ++
Sbjct:   339 PALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTVADDVTLDDLI 384


>CGD|CAL0006022 [details] [associations]
            symbol:RPT6 species:5476 "Candida albicans" [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0034515 "proteasome
            storage granule" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0070682 "proteasome regulatory particle
            assembly" evidence=IEA] [GO:0032968 "positive regulation of
            transcription elongation from RNA polymerase II promoter"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051091 "positive regulation
            of sequence-specific DNA binding transcription factor activity"
            evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0043433 "negative regulation of sequence-specific DNA binding
            transcription factor activity" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0006022
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000103 eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03066
            RefSeq:XP_714440.1 ProteinModelPortal:Q59Y56 STRING:Q59Y56
            GeneID:3643877 KEGG:cal:CaO19.3593 Uniprot:Q59Y56
        Length = 401

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 119/211 (56%), Positives = 158/211 (74%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             + + LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  
Sbjct:   118 LYKILPTKVDPLVSLMMVEKVPDSTYDMVGGLDKQIKEIKEVIELPVKHPELFESLGIAQ 177

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLARA+A + +  F++V  S ++ KYIGE +R++RE+F  AR+H 
Sbjct:   178 PKGVILYGPPGTGKTLLARAVAHHTECKFIRVSGSELVQKYIGEGSRMVRELFVMAREHA 237

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIFMDEID+IG  R    +  D E+QRT++ELLNQLDGF+    +K+IMATNR D+LD
Sbjct:   238 PSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDIKIIMATNRLDILD 297

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             PALLRPGR+DRKIE P P   +R +ILKIH+
Sbjct:   298 PALLRPGRIDRKIEFPAPTVAARTDILKIHS 328


>TAIR|locus:2061639 [details] [associations]
            symbol:RPT2b "regulatory particle AAA-ATPase 2b"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0000502 "proteasome complex"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007292
            "female gamete generation" evidence=IGI] [GO:0010078 "maintenance
            of root meristem identity" evidence=IMP] [GO:0048232 "male gamete
            generation" evidence=IGI] [GO:0042023 "DNA endoreduplication"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051510 "regulation of unidimensional cell
            growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 EMBL:AC006081 GO:GO:0007292
            GO:GO:0010078 HSSP:P43773 GO:GO:0048232 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 UniGene:At.24596 KO:K03062
            ProtClustDB:CLSN2683303 EMBL:AF372977 EMBL:AY035072 EMBL:AY056335
            EMBL:AY087584 IPI:IPI00521093 PIR:E84585 RefSeq:NP_179604.1
            UniGene:At.13496 ProteinModelPortal:Q9SL67 SMR:Q9SL67 IntAct:Q9SL67
            STRING:Q9SL67 PaxDb:Q9SL67 PRIDE:Q9SL67 EnsemblPlants:AT2G20140.1
            GeneID:816533 KEGG:ath:AT2G20140 GeneFarm:1495 TAIR:At2g20140
            InParanoid:Q9SL67 OMA:FIRNQER PhylomeDB:Q9SL67 Uniprot:Q9SL67
        Length = 443

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 121/228 (53%), Positives = 169/228 (74%)

Query:     4 LTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGI 63
             L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GI
Sbjct:   160 LSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGI 219

Query:    64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
             KPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F  A D
Sbjct:   220 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 279

Query:   124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183
               P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+I+ATNR + 
Sbjct:   280 LSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 339

Query:   184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             LDPALLRPGR+DRKIE PLP+ ++R  I +IH + +    +++ E  V
Sbjct:   340 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFV 387


>DICTYBASE|DDB_G0270784 [details] [associations]
            symbol:psmC1 "TAT binding protein alpha"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030587 "sorocarp development"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0270784 GO:GO:0005524 GO:GO:0005634
            EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
            GO:GO:0030587 GO:GO:0000910 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 HSSP:Q9WZ49 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03062 OMA:FIRNQER RefSeq:XP_646726.1 ProteinModelPortal:Q55BV5
            STRING:Q55BV5 PRIDE:Q55BV5 EnsemblProtists:DDB0232964
            GeneID:8617698 KEGG:ddi:DDB_G0270784 ProtClustDB:PTZ00361
            Uniprot:Q55BV5
        Length = 439

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 120/229 (52%), Positives = 169/229 (73%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             TL+++  +  EVDP+V  M  E     SYS +GGL  Q++E++E+IELPL +PEL+  +G
Sbjct:   155 TLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIG 214

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             IKPPKGV+LYG PGTGKTLLA+A+A+   A FL+VV S +I KY+G+  +L+RE+F  A 
Sbjct:   215 IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 274

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             +  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD    VK+IMATNR +
Sbjct:   275 ECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIE 334

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
              LDPAL+RPGR+DRKIE PLP+ +++ +I +IH A +    +++ E  V
Sbjct:   335 TLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFV 383


>TAIR|locus:2119926 [details] [associations]
            symbol:RPT2a "regulatory particle AAA-ATPase 2A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0009933 "meristem structural organization" evidence=IMP]
            [GO:0009965 "leaf morphogenesis" evidence=IMP] [GO:0010015 "root
            morphogenesis" evidence=IMP] [GO:0010078 "maintenance of root
            meristem identity" evidence=IMP] [GO:0010311 "lateral root
            formation" evidence=IMP] [GO:0035266 "meristem growth"
            evidence=IMP] [GO:0048367 "shoot system development" evidence=IMP]
            [GO:0048827 "phyllome development" evidence=IMP] [GO:0048829 "root
            cap development" evidence=IMP] [GO:0046686 "response to cadmium
            ion" evidence=IEP;RCA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0009408 "response to heat" evidence=IMP] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=RCA;IMP] [GO:0043248 "proteasome assembly"
            evidence=RCA;IMP] [GO:0048364 "root development" evidence=IMP]
            [GO:0051788 "response to misfolded protein" evidence=RCA;IMP]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA;IMP]
            [GO:0000502 "proteasome complex" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0007292 "female gamete generation"
            evidence=IGI] [GO:0048232 "male gamete generation" evidence=IGI]
            [GO:0090351 "seedling development" evidence=IMP] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009651
            "response to salt stress" evidence=RCA] [GO:0009853
            "photorespiration" evidence=RCA] [GO:0042023 "DNA
            endoreduplication" evidence=RCA] [GO:0051510 "regulation of
            unidimensional cell growth" evidence=RCA] [GO:0060968 "regulation
            of gene silencing" evidence=IMP] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0046686 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0043161 GO:GO:0016020 EMBL:AL078470
            EMBL:AL161574 GO:GO:0009408 GO:GO:0010311 GO:GO:0048829
            GO:GO:0000502 GO:GO:0043248 GO:GO:0017111 GO:GO:0009965
            GO:GO:0009933 EMBL:AL078469 GO:GO:0007292 GO:GO:0060968
            GO:GO:0010078 HSSP:P43773 GO:GO:0051788 GO:GO:0090351 GO:GO:0048232
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            EMBL:AF123391 EMBL:AB161192 EMBL:AY034975 IPI:IPI00538666
            PIR:T08959 RefSeq:NP_194633.1 UniGene:At.24596
            ProteinModelPortal:Q9SZD4 SMR:Q9SZD4 IntAct:Q9SZD4 STRING:Q9SZD4
            PaxDb:Q9SZD4 PRIDE:Q9SZD4 EnsemblPlants:AT4G29040.1 GeneID:829025
            KEGG:ath:AT4G29040 GeneFarm:1494 TAIR:At4g29040 InParanoid:Q9SZD4
            KO:K03062 OMA:SAIVMEA PhylomeDB:Q9SZD4 ProtClustDB:CLSN2683303
            GO:GO:0035266 Uniprot:Q9SZD4
        Length = 443

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 121/228 (53%), Positives = 169/228 (74%)

Query:     4 LTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGI 63
             L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GI
Sbjct:   160 LSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGI 219

Query:    64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
             KPPKGV+LYG PGTGKTLLA+A+A++  A FL+VV S +I KY+G+  +L+RE+F  A D
Sbjct:   220 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 279

Query:   124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183
               P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+I+ATNR + 
Sbjct:   280 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 339

Query:   184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             LDPALLRPGR+DRKIE PLP+ ++R  I +IH + +    +++ E  V
Sbjct:   340 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFV 387


>ASPGD|ASPL0000049719 [details] [associations]
            symbol:AN2213 species:162425 "Emericella nidulans"
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0043171 "peptide catabolic process"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 EMBL:BN001307
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER
            OrthoDB:EOG4FN7S6 EMBL:AACD01000035 RefSeq:XP_659817.1
            ProteinModelPortal:Q5BB67 STRING:Q5BB67
            EnsemblFungi:CADANIAT00008897 GeneID:2875757 KEGG:ani:AN2213.2
            Uniprot:Q5BB67
        Length = 460

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 114/229 (49%), Positives = 168/229 (73%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             T++++  L  E DP+V  M  +     SY+ +GGL  QI+E+RES+ELPL++PEL+  +G
Sbjct:   175 TVSVVGVLTEESDPLVSVMKLDKAPTESYADIGGLESQIQEVRESVELPLLHPELYEEMG 234

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             IKPPKGV+LYG PGTGKTLLA+A+A+   A FL++V S +I KY+G+  RL+R++F  A 
Sbjct:   235 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQIFQVAA 294

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             +H P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATN+ +
Sbjct:   295 EHAPSIVFIDEIDAIGTKRYDSTSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 354

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
              LDPAL+RPGR+DRKI    P++ ++ +I  +H + ++   ++D +  +
Sbjct:   355 TLDPALIRPGRIDRKILFENPDQNTKKKIFTLHTSKMSLGDDVDLDEFI 403


>SGD|S000003016 [details] [associations]
            symbol:RPT6 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0034515
            "proteasome storage granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
            "chromatin remodeling" evidence=IMP] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP] [GO:0032968
            "positive regulation of transcription elongation from RNA
            polymerase II promoter" evidence=IMP] [GO:0045899 "positive
            regulation of RNA polymerase II transcriptional preinitiation
            complex assembly" evidence=IGI;IMP] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0019904 "protein domain specific binding"
            evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IPI] [GO:0006289 "nucleotide-excision
            repair" evidence=IGI] [GO:0051091 "positive regulation of
            sequence-specific DNA binding transcription factor activity"
            evidence=IMP] [GO:0043433 "negative regulation of sequence-specific
            DNA binding transcription factor activity" evidence=IMP]
            [GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003016
            GO:GO:0005524 GO:GO:0005634 GO:GO:0019904 GO:GO:0051091
            GO:GO:0043161 EMBL:BK006941 GO:GO:0016887 GO:GO:0006338
            GO:GO:0043433 GO:GO:0045899 GO:GO:0006289 GO:GO:0032968
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242 GO:GO:0034515
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03066
            OMA:TEILRIH GeneTree:ENSGT00550000074947 OrthoDB:EOG44N21J
            EMBL:X66400 EMBL:L01626 EMBL:Z72570 EMBL:AY693135 PIR:S64052
            RefSeq:NP_011467.1 ProteinModelPortal:Q01939 SMR:Q01939
            DIP:DIP-979N IntAct:Q01939 MINT:MINT-568023 STRING:Q01939
            PaxDb:Q01939 PeptideAtlas:Q01939 EnsemblFungi:YGL048C GeneID:852834
            KEGG:sce:YGL048C NextBio:972403 Genevestigator:Q01939
            GermOnline:YGL048C Uniprot:Q01939
        Length = 405

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 117/209 (55%), Positives = 156/209 (74%)

Query:     8 RALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK 67
             + L  + DP+V  M+ E   + +Y  VGGL+ QI+E++E IELP+ +PELF  +GI  PK
Sbjct:   124 KVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK 183

Query:    68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPC 127
             GV+LYGPPGTGKTLLARA+A + D  F++V  + ++ KYIGE +R++RE+F  AR+H P 
Sbjct:   184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPS 243

Query:   128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPA 187
             IIFMDEID+IG  R       D E+QRT++ELLNQLDGF+    +K+IMATNR D+LDPA
Sbjct:   244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPA 303

Query:   188 LLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             LLRPGR+DRKIE P P+  +R EIL+IH+
Sbjct:   304 LLRPGRIDRKIEFPPPSVAARAEILRIHS 332


>WB|WBGene00004502 [details] [associations]
            symbol:rpt-2 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0008340 "determination of adult
            lifespan" evidence=IMP] [GO:0031625 "ubiquitin protein ligase
            binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0000003 GO:GO:0030163
            GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03062 OMA:FIRNQER EMBL:FO080494 PIR:T31800
            RefSeq:NP_504558.1 ProteinModelPortal:O16368 SMR:O16368
            IntAct:O16368 MINT:MINT-210699 STRING:O16368 PaxDb:O16368
            PRIDE:O16368 EnsemblMetazoa:F29G9.5.1 EnsemblMetazoa:F29G9.5.2
            GeneID:178988 KEGG:cel:CELE_F29G9.5 UCSC:F29G9.5 CTD:178988
            WormBase:F29G9.5 GeneTree:ENSGT00550000074818 InParanoid:O16368
            NextBio:903424 Uniprot:O16368
        Length = 443

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 112/226 (49%), Positives = 166/226 (73%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  L  + DP+V  M  E     +Y+ VGGL  QI+E++E++ELPL +PE +  +GI+P
Sbjct:   162 VIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRP 221

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYG PGTGKTLLA+A+A+   A FL++V S +I KY+G+  +++RE+F  A ++ 
Sbjct:   222 PKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENA 281

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK++MATNR + LD
Sbjct:   282 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLD 341

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE PLP+E+++  I +IH + +    E++ E  +
Sbjct:   342 PALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFI 387


>GENEDB_PFALCIPARUM|PF11_0314 [details] [associations]
            symbol:PF11_0314 "26S protease subunit
            regulatory subunit 6a, putative" species:5833 "Plasmodium
            falciparum" [GO:0004175 "endopeptidase activity" evidence=ISS]
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0006508
            GO:GO:0016887 GO:GO:0004175 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853
            EMBL:AE014186 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 121/228 (53%), Positives = 164/228 (71%)

Query:     6 IMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             I+  LP+E D  V  M + E P    YS +GGL  QI +L E+I LP+++ E F ++GIK
Sbjct:   160 IIDKLPQEYDNRVKAMEVIEKPSE-DYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIK 218

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
             PPKGVL++GPPGTGKTLLARA AS  +A FLK+    ++  +IG+ A+++R+ F  A++ 
Sbjct:   219 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 278

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIF+DE+DAIG +RF    S DRE+QRT++ELLNQLDGF     VK+I ATNRPD L
Sbjct:   279 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 338

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             DPALLR GRLDRKIE+P PNE+SR  IL+IH+  +  H ++++E + +
Sbjct:   339 DPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELAR 386


>UNIPROTKB|Q8II60 [details] [associations]
            symbol:PF11_0314 "26S protease subunit regulatory subunit
            6a, putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000502
            "proteasome complex" evidence=ISS] [GO:0004175 "endopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 EMBL:AE014186
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 RefSeq:XP_001347985.1
            ProteinModelPortal:Q8II60 IntAct:Q8II60 MINT:MINT-1730387
            PRIDE:Q8II60 EnsemblProtists:PF11_0314:mRNA GeneID:810861
            KEGG:pfa:PF11_0314 EuPathDB:PlasmoDB:PF3D7_1130400 Uniprot:Q8II60
        Length = 439

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 121/228 (53%), Positives = 164/228 (71%)

Query:     6 IMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             I+  LP+E D  V  M + E P    YS +GGL  QI +L E+I LP+++ E F ++GIK
Sbjct:   160 IIDKLPQEYDNRVKAMEVIEKPSE-DYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIK 218

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
             PPKGVL++GPPGTGKTLLARA AS  +A FLK+    ++  +IG+ A+++R+ F  A++ 
Sbjct:   219 PPKGVLMHGPPGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEK 278

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIF+DE+DAIG +RF    S DRE+QRT++ELLNQLDGF     VK+I ATNRPD L
Sbjct:   279 APAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTL 338

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             DPALLR GRLDRKIE+P PNE+SR  IL+IH+  +  H ++++E + +
Sbjct:   339 DPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELAR 386


>CGD|CAL0005257 [details] [associations]
            symbol:RPT2 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IEA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045732 "positive regulation
            of protein catabolic process" evidence=IEA] [GO:0043171 "peptide
            catabolic process" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0005257 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 EMBL:AACQ01000051 EMBL:AACQ01000050
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03062 RefSeq:XP_717718.1
            RefSeq:XP_717812.1 ProteinModelPortal:Q5A7M6 STRING:Q5A7M6
            GeneID:3640525 GeneID:3640683 KEGG:cal:CaO19.12895
            KEGG:cal:CaO19.5440 Uniprot:Q5A7M6
        Length = 465

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 114/229 (49%), Positives = 166/229 (72%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             T+ ++  L  + DP+V  M  +     SY+ +GGL  QI+E++ES+ELPL +PEL+  +G
Sbjct:   157 TVAVVGVLQDDADPMVSVMKLDKSPTESYADIGGLESQIQEIKESVELPLTHPELYEEMG 216

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             IKPPKGV+LYG PGTGKTLLA+A+A+   A FL++V S +I KY+G+  RL R++F  A 
Sbjct:   217 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFQIAA 276

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             DH P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G +K+IMATN+ +
Sbjct:   277 DHAPSIVFIDEIDAIGTKRYESTSGGEREIQRTMLELLNQLDGFDDRGDIKVIMATNKIE 336

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
              LDPAL+RPGR+DRKI    P+  ++ +IL IH + ++   +++ + +V
Sbjct:   337 SLDPALIRPGRIDRKILFENPDANTKKKILTIHTSKMSLADDVNLDEIV 385


>SGD|S000002165 [details] [associations]
            symbol:RPT2 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0016887 "ATPase activity"
            evidence=IDA] [GO:0070682 "proteasome regulatory particle assembly"
            evidence=IMP] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IMP] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=IDA] [GO:0045732 "positive regulation of
            protein catabolic process" evidence=IDA] [GO:0043171 "peptide
            catabolic process" evidence=IMP] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002165 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0016887 GO:GO:0043171 GO:GO:0006511
            GO:GO:0045732 EMBL:Z48432 GO:GO:0070682 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T
            PDBsum:4B4T KO:K03062 OMA:FIRNQER GeneTree:ENSGT00550000074818
            OrthoDB:EOG4FN7S6 EMBL:X81070 EMBL:L17040 EMBL:Z74055 PIR:S46613
            RefSeq:NP_010277.1 ProteinModelPortal:P40327 SMR:P40327
            DIP:DIP-6282N IntAct:P40327 MINT:MINT-632695 STRING:P40327
            PaxDb:P40327 PeptideAtlas:P40327 PRIDE:P40327 EnsemblFungi:YDL007W
            GeneID:851557 KEGG:sce:YDL007W NextBio:968983 Genevestigator:P40327
            GermOnline:YDL007W Uniprot:P40327
        Length = 437

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 116/229 (50%), Positives = 166/229 (72%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             T++I+  L  + DP+V  M  +     SYS +GGL  QI+E++ES+ELPL +PEL+  +G
Sbjct:   153 TMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG 212

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             IKPPKGV+LYG PGTGKTLLA+A+A+   A FL++V S +I KY+G+  RL R++F  A 
Sbjct:   213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG 272

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             ++ P I+F+DEIDAIG +R+   +  +REIQRT++ELLNQLDGFD  G VK+IMATN+ +
Sbjct:   273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
              LDPAL+RPGR+DRKI    P+  ++ +IL IH + +    +++ E +V
Sbjct:   333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV 381


>TAIR|locus:2079742 [details] [associations]
            symbol:RPT5A "regulatory particle triple-A ATPase 5A"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM;IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IGI;ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
            [GO:0005516 "calmodulin binding" evidence=TAS] [GO:0009553 "embryo
            sac development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000741 "karyogamy"
            evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009560 "embryo sac egg cell
            differentiation" evidence=RCA] [GO:0009630 "gravitropism"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009555 GO:GO:0000502
            GO:GO:0017111 GO:GO:0009553 GO:GO:0010498 EMBL:AC009606
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP EMBL:AF081573 EMBL:AF123394 EMBL:AY062705 EMBL:BT000140
            IPI:IPI00517001 RefSeq:NP_187204.1 UniGene:At.11513 HSSP:Q9LCZ4
            ProteinModelPortal:Q9SEI2 SMR:Q9SEI2 IntAct:Q9SEI2 STRING:Q9SEI2
            PaxDb:Q9SEI2 PRIDE:Q9SEI2 EnsemblPlants:AT3G05530.1 GeneID:819718
            KEGG:ath:AT3G05530 GeneFarm:2742 TAIR:At3g05530 InParanoid:Q9SEI2
            PhylomeDB:Q9SEI2 ProtClustDB:CLSN2679225 Uniprot:Q9SEI2
        Length = 424

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 115/227 (50%), Positives = 162/227 (71%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + E F ++G++P
Sbjct:   145 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRP 204

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVLLYGPPGTGKTL+ARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   205 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKA 264

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF    ++K+I ATNR D+LD
Sbjct:   265 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILD 324

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             PAL+R GRLDRKIE P P E++R  IL+IH+  +  H ++++E + +
Sbjct:   325 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELAR 371


>TAIR|locus:2161258 [details] [associations]
            symbol:RPT3 "regulatory particle triple-A ATPase 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
            activity" evidence=IGI;ISS] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA;TAS] [GO:0005634 "nucleus" evidence=TAS]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0016020 "membrane"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0006094 "gluconeogenesis" evidence=RCA]
            [GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0006888
            "ER to Golgi vesicle-mediated transport" evidence=RCA] [GO:0007010
            "cytoskeleton organization" evidence=RCA] [GO:0009407 "toxin
            catabolic process" evidence=RCA] [GO:0009735 "response to cytokinin
            stimulus" evidence=RCA] [GO:0009853 "photorespiration"
            evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
            evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0048767 "root hair elongation" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            [GO:0008540 "proteasome regulatory particle, base subcomplex"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            GO:GO:0016020 EMBL:AB019228 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 EMBL:AF123392 EMBL:AY070466 EMBL:BT020373
            IPI:IPI00537564 RefSeq:NP_200637.1 UniGene:At.45955
            ProteinModelPortal:Q9SEI4 SMR:Q9SEI4 IntAct:Q9SEI4 STRING:Q9SEI4
            PaxDb:Q9SEI4 PRIDE:Q9SEI4 EnsemblPlants:AT5G58290.1 GeneID:835941
            KEGG:ath:AT5G58290 GeneFarm:1500 TAIR:At5g58290 InParanoid:Q9SEI4
            KO:K03063 OMA:DQTTNVK ProtClustDB:CLSN2686094 Genevestigator:Q9SEI4
            GermOnline:AT5G58290 Uniprot:Q9SEI4
        Length = 408

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 115/226 (50%), Positives = 162/226 (71%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +   +  +VSY+ +GG   Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   129 LVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP 188

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVLLYGPPGTGKT+LA+A+A++  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   189 PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAI   RF   T ADRE+QR LMELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   249 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 308

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  + ++  + +    E+D E  V
Sbjct:   309 PALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYV 354


>UNIPROTKB|O42586 [details] [associations]
            symbol:psmc3-b "26S protease regulatory subunit 6A-B"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 EMBL:Y10460 UniGene:Xl.113 ProteinModelPortal:O42586
            Xenbase:XB-GENE-1009853 Uniprot:O42586
        Length = 404

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   125 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 184

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   185 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKA 244

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   245 PSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILD 304

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   305 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 354


>WB|WBGene00004503 [details] [associations]
            symbol:rpt-3 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0008340
            GO:GO:0009792 GO:GO:0005737 GO:GO:0002119 GO:GO:0000003
            GO:GO:0030163 GO:GO:0000502 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK
            EMBL:FO081210 PIR:A88485 RefSeq:NP_498429.1
            ProteinModelPortal:P46502 SMR:P46502 DIP:DIP-24412N IntAct:P46502
            MINT:MINT-212949 STRING:P46502 PaxDb:P46502
            EnsemblMetazoa:F23F12.6.1 EnsemblMetazoa:F23F12.6.2 GeneID:175925
            KEGG:cel:CELE_F23F12.6 UCSC:F23F12.6.1 CTD:175925 WormBase:F23F12.6
            GeneTree:ENSGT00550000074962 InParanoid:P46502 NextBio:890338
            Uniprot:P46502
        Length = 414

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 112/223 (50%), Positives = 161/223 (72%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  ++  ++SY  +GGL  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   135 LVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDP 194

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A+N  A+F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   195 PRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS 254

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   255 PSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLD 314

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 228
             PALLRPGRLDRKIE PLP+ + +  +     + +    ++D E
Sbjct:   315 PALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLE 357


>DICTYBASE|DDB_G0284415 [details] [associations]
            symbol:psmC3 "26S proteasome ATPase 3 subunit"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000502 "proteasome
            complex" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0284415 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0030163 GO:GO:0000502
            HSSP:Q01853 GO:GO:0017111 EMBL:AAFI02000064 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            RefSeq:XP_638617.1 ProteinModelPortal:Q54PN7 STRING:Q54PN7
            PRIDE:Q54PN7 EnsemblProtists:DDB0232967 GeneID:8624588
            KEGG:ddi:DDB_G0284415 InParanoid:Q54PN7 OMA:GALMYGP
            ProtClustDB:CLSZ2433711 Uniprot:Q54PN7
        Length = 421

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/230 (50%), Positives = 162/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E++ LP+ + E F  +GIKP
Sbjct:   142 ILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKP 201

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+  ++ +LK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   202 PKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQLVQMFIGDGAKLVRDAFALAKEKG 261

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    S DRE+QRT++ELLNQLDGF     +K+I ATNR D+LD
Sbjct:   262 PTIIFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILD 321

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE PLPNE++R  IL+IH+  +    +++++ + + +E
Sbjct:   322 PALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSE 371


>TAIR|locus:2036099 [details] [associations]
            symbol:RPT5B "26S proteasome AAA-ATPase subunit RPT5B"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005516 "calmodulin
            binding" evidence=ISS] [GO:0010255 "glucose mediated signaling
            pathway" evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009553 "embryo sac
            development" evidence=IGI] [GO:0009555 "pollen development"
            evidence=IGI] [GO:0010498 "proteasomal protein catabolic process"
            evidence=IGI;RCA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0006094 "gluconeogenesis" evidence=RCA] [GO:0006635 "fatty acid
            beta-oxidation" evidence=RCA] [GO:0007010 "cytoskeleton
            organization" evidence=RCA] [GO:0009407 "toxin catabolic process"
            evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
            evidence=RCA] [GO:0051788 "response to misfolded protein"
            evidence=RCA] [GO:0080129 "proteasome core complex assembly"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0009555
            GO:GO:0000502 GO:GO:0017111 GO:GO:0009553 EMBL:AC000106
            GO:GO:0010498 GO:GO:0010255 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 ProtClustDB:CLSN2679225
            EMBL:EU980096 EMBL:AY050423 EMBL:AF412095 EMBL:AY124813
            IPI:IPI00549144 PIR:C86223 RefSeq:NP_172384.1 UniGene:At.10379
            UniGene:At.42241 ProteinModelPortal:O04019 SMR:O04019 IntAct:O04019
            STRING:O04019 PaxDb:O04019 PRIDE:O04019 EnsemblPlants:AT1G09100.1
            GeneID:837431 KEGG:ath:AT1G09100 GeneFarm:1498 TAIR:At1g09100
            InParanoid:O04019 OMA:VEILEMS PhylomeDB:O04019
            Genevestigator:O04019 Uniprot:O04019
        Length = 423

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/227 (50%), Positives = 162/227 (71%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     Y+ +GGL  QI+EL E+I LP+ + E F ++GI+P
Sbjct:   144 ILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRP 203

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVLLYGPPGTGKTL+ARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKS 263

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF    ++K+I ATNR D+LD
Sbjct:   264 PCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILD 323

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             PAL+R GRLDRKIE P P E++R  IL+IH+  +  + ++++E + +
Sbjct:   324 PALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELAR 370


>UNIPROTKB|O42587 [details] [associations]
            symbol:psmc3-a "26S protease regulatory subunit 6A-A"
            species:8355 "Xenopus laevis" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 CTD:4913 TIGRFAMs:TIGR01242 EMBL:Y10461
            RefSeq:NP_001080249.1 UniGene:Xl.12803 ProteinModelPortal:O42587
            PRIDE:O42587 GeneID:379941 KEGG:xla:379941 Xenbase:XB-GENE-962533
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 Uniprot:O42587
        Length = 405

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 117/232 (50%), Positives = 162/232 (69%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   144 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 203

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   204 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 263

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   264 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILD 323

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +   +S
Sbjct:   324 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCPTIS 375


>POMBASE|SPAC3A11.12c [details] [associations]
            symbol:rpt5 "19S proteasome regulatory subunit Rpt5
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004175
            "endopeptidase activity" evidence=ISO] [GO:0005524 "ATP binding"
            evidence=ISM] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0007346 "regulation of mitotic
            cell cycle" evidence=IC] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=ISO] [GO:0016887 "ATPase
            activity" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPAC3A11.12c GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0007346 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0016887 GO:GO:0004175 GO:GO:0006511 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 GO:GO:0008540
            OMA:GALMYGP EMBL:AB012136 PIR:T11634 RefSeq:XP_001713083.1
            ProteinModelPortal:O14126 STRING:O14126 PRIDE:O14126
            EnsemblFungi:SPAC3A11.12c.1 GeneID:3361462 KEGG:spo:SPAC3A11.12c
            OrthoDB:EOG40VZZ2 NextBio:20811506 Uniprot:O14126
        Length = 438

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 116/227 (51%), Positives = 162/227 (71%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGLS QI EL E+I LP+   + F ++G+KP
Sbjct:   159 IIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKP 218

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG L++GPPGTGKTLLARA A+  +A FLK+ +  ++  +IG+ A+L+R+ F  A++  
Sbjct:   219 PKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKS 278

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D LD
Sbjct:   279 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLD 338

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             PALLR GRLDRK+E PLPNE++R+ IL+IH+  +A   +I++E + +
Sbjct:   339 PALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELAR 385


>DICTYBASE|DDB_G0289003 [details] [associations]
            symbol:psmC4 "HIV TAT binding-protein-related"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0006972 "hyperosmotic response"
            evidence=IEP] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006508
            "proteolysis" evidence=ISS] [GO:0005838 "proteasome regulatory
            particle" evidence=ISS] [GO:0004175 "endopeptidase activity"
            evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0289003 GO:GO:0005524 GO:GO:0005634
            GO:GO:0045335 GO:GO:0006508 GenomeReviews:CM000154_GR GO:GO:0006972
            GO:GO:0004175 EMBL:AAFI02000129 GO:GO:0030163 GO:GO:0017111
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03063 OMA:DQTTNVK EMBL:L16578
            PIR:JN0611 RefSeq:XP_636422.1 ProteinModelPortal:P34123 SMR:P34123
            STRING:P34123 PRIDE:P34123 EnsemblProtists:DDB0191435
            GeneID:8626913 KEGG:ddi:DDB_G0289003 ProtClustDB:PTZ00454
            GO:GO:0005838 Uniprot:P34123
        Length = 403

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 117/226 (51%), Positives = 161/226 (71%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  ++ +  ++  + SYS +GG   Q +E+RE++ELPL +  L+ ++GI P
Sbjct:   124 LVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDP 183

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVLLYGPPGTGKT+LA+A+A +  A F++VV S  + KY+GE  RL+R++F  AR++ 
Sbjct:   184 PRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENS 243

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR LMELLNQ+DGFD    VK+IMATNR D LD
Sbjct:   244 PAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLD 303

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I ++  + +    E+D E  V
Sbjct:   304 PALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYV 349


>UNIPROTKB|F1NDQ1 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00819977
            Ensembl:ENSGALT00000013163 Uniprot:F1NDQ1
        Length = 385

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   106 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 165

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   166 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 225

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   226 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 285

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   286 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 335


>UNIPROTKB|F1P3L9 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0022624 "proteasome
            accessory complex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242 OMA:GALMYGP
            EMBL:AADN02033470 EMBL:AADN02033469 IPI:IPI00601469
            Ensembl:ENSGALT00000038503 Uniprot:F1P3L9
        Length = 389

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   110 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 169

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   170 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 229

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   230 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 289

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   290 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 339


>UNIPROTKB|F1PBK7 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:AAEX03011486
            Ensembl:ENSCAFT00000013842 Uniprot:F1PBK7
        Length = 439

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   160 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 219

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   220 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 279

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   280 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 339

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   340 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 389


>UNIPROTKB|E9PM69 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AC090559 TIGRFAMs:TIGR01242 HGNC:HGNC:9549
            ChiTaRS:PSMC3 IPI:IPI00979423 ProteinModelPortal:E9PM69 SMR:E9PM69
            PRIDE:E9PM69 Ensembl:ENST00000530912 ArrayExpress:E9PM69
            Bgee:E9PM69 Uniprot:E9PM69
        Length = 397

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   118 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 177

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   178 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 237

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   238 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 297

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   298 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 347


>UNIPROTKB|H0YJS8 [details] [associations]
            symbol:PSMC6 "26S protease regulatory subunit 10B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] InterPro:IPR003959 Pfam:PF00004
            GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:AL133453 HGNC:HGNC:9553 Ensembl:ENST00000555339 Uniprot:H0YJS8
        Length = 195

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 115/133 (86%), Positives = 122/133 (91%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             MTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF R
Sbjct:    63 MTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQR 122

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF Y
Sbjct:   123 VGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNY 182

Query:   121 ARDHQPCIIFMDE 133
             ARDHQPCIIFMDE
Sbjct:   183 ARDHQPCIIFMDE 195


>UNIPROTKB|P17980 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0001824
            "blastocyst development" evidence=IEA] [GO:0048471 "perinuclear
            region of cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
            processing body" evidence=ISS] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0003713 "transcription coactivator
            activity" evidence=TAS] [GO:0003714 "transcription corepressor
            activity" evidence=TAS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
            evidence=TAS] [GO:0006521 "regulation of cellular amino acid
            metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
            evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
            reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031145 "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] Reactome:REACT_13505 Reactome:REACT_578
            Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
            Reactome:REACT_111217 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0003714
            GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566
            GO:GO:0019048 GO:GO:0005654 GO:GO:0002479 GO:GO:0016032
            EMBL:CH471064 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
            GO:GO:0044281 GO:GO:0000082 GO:GO:0003713 GO:GO:0051436
            GO:GO:0017111 GO:GO:0000932 GO:GO:0000216 GO:GO:0000209
            GO:GO:0000084 GO:GO:0031145 GO:GO:0051437 GO:GO:0006521
            GO:GO:0001824 Reactome:REACT_383 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624 OMA:GALMYGP
            EMBL:AK313518 EMBL:BC008713 EMBL:BC073165 EMBL:BC106920
            EMBL:BC107804 EMBL:AK222485 EMBL:M34079 EMBL:CR456731
            IPI:IPI00018398 PIR:A34832 RefSeq:NP_002795.2 UniGene:Hs.250758
            ProteinModelPortal:P17980 SMR:P17980 DIP:DIP-27555N IntAct:P17980
            MINT:MINT-1149785 STRING:P17980 PhosphoSite:P17980 DMDM:20532406
            REPRODUCTION-2DPAGE:IPI00018398 PaxDb:P17980 PeptideAtlas:P17980
            PRIDE:P17980 DNASU:5702 Ensembl:ENST00000298852 GeneID:5702
            KEGG:hsa:5702 UCSC:uc001nfh.2 CTD:5702 GeneCards:GC11M047440
            HGNC:HGNC:9549 HPA:HPA006065 MIM:186852 neXtProt:NX_P17980
            PharmGKB:PA33894 InParanoid:P17980 OrthoDB:EOG46143Z
            PhylomeDB:P17980 ChiTaRS:PSMC3 GenomeRNAi:5702 NextBio:22154
            PMAP-CutDB:P17980 ArrayExpress:P17980 Bgee:P17980 CleanEx:HS_PSMC3
            Genevestigator:P17980 GermOnline:ENSG00000165916 Uniprot:P17980
        Length = 439

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   160 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 219

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   220 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 279

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   280 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 339

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   340 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 389


>UNIPROTKB|F1SID4 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:CU856312
            Ensembl:ENSSSCT00000014459 Uniprot:F1SID4
        Length = 446

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   167 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 226

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   227 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 286

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   287 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 346

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   347 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 396


>MGI|MGI:1098754 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit,
            ATPase 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0048471 "perinuclear region of
            cytoplasm" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 MGI:MGI:1098754 GO:GO:0005524 GO:GO:0005634
            GO:GO:0030163 GO:GO:0017111 GO:GO:0000932
            GeneTree:ENSGT00560000077230 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 KO:K03065 GO:GO:0022624
            CTD:5702 ChiTaRS:PSMC3 EMBL:D49686 EMBL:AB040858 EMBL:AY902337
            EMBL:AL691439 EMBL:BC005783 IPI:IPI00133206 RefSeq:NP_032974.2
            UniGene:Mm.289832 ProteinModelPortal:O88685 SMR:O88685
            IntAct:O88685 STRING:O88685 PhosphoSite:O88685 PaxDb:O88685
            PRIDE:O88685 Ensembl:ENSMUST00000067663 GeneID:19182 KEGG:mmu:19182
            NextBio:295874 Bgee:O88685 Genevestigator:O88685
            GermOnline:ENSMUSG00000002102 Uniprot:O88685
        Length = 442

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   163 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 222

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   223 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 282

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   283 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 342

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   343 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 392


>RGD|61905 [details] [associations]
            symbol:Psmc3 "proteasome (prosome, macropain) 26S subunit, ATPase
           3" species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
           processing body" evidence=ISS] [GO:0001824 "blastocyst development"
           evidence=IEA;ISO] [GO:0005515 "protein binding" evidence=IPI]
           [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
           evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA]
           [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
           [GO:0022624 "proteasome accessory complex" evidence=IEA;ISO;ISS]
           [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0048471
           "perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR003593
           InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
           Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 RGD:61905 GO:GO:0005524
           GO:GO:0005634 GO:GO:0048471 GO:GO:0030163 GO:GO:0017111
           GO:GO:0000932 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
           KO:K03065 GO:GO:0022624 CTD:5702 EMBL:D83522 EMBL:U77918
           IPI:IPI00421528 RefSeq:NP_113783.1 UniGene:Rn.11173
           ProteinModelPortal:Q63569 IntAct:Q63569 STRING:Q63569
           PhosphoSite:Q63569 PRIDE:Q63569 GeneID:29677 KEGG:rno:29677
           UCSC:RGD:61905 NextBio:610019 ArrayExpress:Q63569
           Genevestigator:Q63569 GermOnline:ENSRNOG00000011414 Uniprot:Q63569
        Length = 439

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   160 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 219

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   220 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 279

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   280 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 339

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   340 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 389


>UNIPROTKB|Q6P6U2 [details] [associations]
            symbol:Psmc3 "26S protease regulatory subunit 6A"
            species:10116 "Rattus norvegicus" [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:61905 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:CH473949
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 HOGENOM:HOG000225143
            IPI:IPI00421528 UniGene:Rn.11173 EMBL:BC062019 SMR:Q6P6U2
            IntAct:Q6P6U2 STRING:Q6P6U2 Ensembl:ENSRNOT00000015757
            Genevestigator:Q6P6U2 Uniprot:Q6P6U2
        Length = 442

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 116/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   163 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 222

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   223 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 282

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   283 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 342

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE + +  +
Sbjct:   343 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTD 392


>FB|FBgn0028686 [details] [associations]
            symbol:Rpt3 "Regulatory particle triple-A ATPase 3"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0005838 "proteasome regulatory particle"
            evidence=ISS;IDA] [GO:0001673 "male germ cell nucleus"
            evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IMP] InterPro:IPR001270 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PRINTS:PR00300 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:AE014298 GO:GO:0006508
            GO:GO:0006974 GO:GO:0016887 GO:GO:0004175 GO:GO:0001673
            GO:GO:0030163 HSSP:Q01853 eggNOG:COG1222 TIGRFAMs:TIGR01242
            GO:GO:0008540 BRENDA:3.4.25.1 KO:K03063 OMA:DQTTNVK
            GeneTree:ENSGT00550000074962 EMBL:AF145306 EMBL:BT046144
            EMBL:FN544098 EMBL:FN544099 EMBL:FN544100 EMBL:FN544101
            EMBL:FN544102 EMBL:FN544103 EMBL:FN544104 EMBL:FN544105
            EMBL:FN544106 EMBL:FN544108 RefSeq:NP_572686.1 UniGene:Dm.8238
            SMR:Q9V405 STRING:Q9V405 EnsemblMetazoa:FBtr0073436 GeneID:32047
            KEGG:dme:Dmel_CG16916 UCSC:CG16916-RA CTD:32047 FlyBase:FBgn0028686
            InParanoid:Q9V405 OrthoDB:EOG4P5HRH GenomeRNAi:32047 NextBio:776548
            Uniprot:Q9V405
        Length = 413

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 112/226 (49%), Positives = 162/226 (71%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  ++  +VSY+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   134 LVDVLPPEADSSISMLQPDEKPDVSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDP 193

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A+F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   194 PRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 253

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   254 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 313

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  +     + +    ++D E  V
Sbjct:   314 PALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFV 359


>SGD|S000005643 [details] [associations]
            symbol:RPT5 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000005643 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006948 GO:GO:0006511 GO:GO:0017111 EMBL:X90518 EMBL:X94335
            GO:GO:0045899 GeneTree:ENSGT00560000077230 GO:GO:0070682
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            GO:GO:0008540 PDB:4B4T PDBsum:4B4T OMA:GALMYGP OrthoDB:EOG40VZZ2
            EMBL:X73569 EMBL:Z75025 PIR:S46605 RefSeq:NP_014760.3
            RefSeq:NP_014762.3 ProteinModelPortal:P33297 SMR:P33297
            DIP:DIP-1590N IntAct:P33297 MINT:MINT-383887 STRING:P33297
            PaxDb:P33297 PeptideAtlas:P33297 EnsemblFungi:YOR117W GeneID:854284
            GeneID:854286 KEGG:sce:YOR117W KEGG:sce:YOR119C KO:K07178
            NextBio:976260 Genevestigator:P33297 GermOnline:YOR117W
            Uniprot:P33297
        Length = 434

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/227 (51%), Positives = 159/227 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++    +YS VGGL  QI EL E+I LP+   + F  +GI+ 
Sbjct:   155 ILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA 214

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG L+YGPPGTGKTLLARA A+  +A FLK+ +  ++  YIGE A+L+R+ F  A++  
Sbjct:   215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA 274

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    S DRE+QRT++ELLNQLDGF    +VK++ ATNR DVLD
Sbjct:   275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             PALLR GRLDRKIE PLP+E SR +IL+IH+  +    +I+++ + +
Sbjct:   335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381


>POMBASE|SPBC4.07c [details] [associations]
            symbol:rpt2 "19S proteasome regulatory subunit Rpt2"
            species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IC]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=IC] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=IGI] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 PomBase:SPBC4.07c
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0007346
            GO:GO:0043161 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0016887
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03062 OMA:FIRNQER EMBL:Z29366 PIR:S39348
            RefSeq:NP_595480.1 ProteinModelPortal:P36612 IntAct:P36612
            STRING:P36612 PRIDE:P36612 EnsemblFungi:SPBC4.07c.1 GeneID:2540939
            KEGG:spo:SPBC4.07c OrthoDB:EOG4FN7S6 NextBio:20802054
            Uniprot:P36612
        Length = 448

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 113/230 (49%), Positives = 167/230 (72%)

Query:     4 LTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGI 63
             ++I+  L  + DP++  M  +     SY+ +GGL  QI+E++E++ELPL +PEL+  +GI
Sbjct:   163 MSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGI 222

Query:    64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
             KPPKGV+LYG PGTGKTLLA+A+A+   A FL+VV S +I KY+G+  RL+R++F  A +
Sbjct:   223 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEE 282

Query:   124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPD 182
             H P I+F+DEIDAIG +R+   + A+REIQRT++ELLNQLDGFD   + +K+IMATNR  
Sbjct:   283 HSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRIS 342

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
              LDPAL+RPGR+DRKI    P+E ++ +I  IH + +    +++ E +++
Sbjct:   343 DLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQ 392


>FB|FBgn0037742 [details] [associations]
            symbol:Rpt3R "Regulatory particle triple-A ATPase 3-related"
            species:7227 "Drosophila melanogaster" [GO:0006508 "proteolysis"
            evidence=ISS] [GO:0008540 "proteasome regulatory particle, base
            subcomplex" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0030163 "protein catabolic process" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=NAS]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PRINTS:PR00300
            PROSITE:PS00674 SMART:SM00382 EMBL:AE014297 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006200 GO:GO:0006974 GO:GO:0016887
            GO:GO:0030163 TIGRFAMs:TIGR01242 KO:K03063
            GeneTree:ENSGT00550000074962 FlyBase:FBgn0037742 EMBL:BT016035
            RefSeq:NP_649938.2 UniGene:Dm.21651 SMR:Q9VH79 STRING:Q9VH79
            EnsemblMetazoa:FBtr0301536 EnsemblMetazoa:FBtr0332172 GeneID:41190
            KEGG:dme:Dmel_CG9475 UCSC:CG9475-RA CTD:41190 InParanoid:Q9VH79
            OMA:KQSNCLV OrthoDB:EOG49GHZ0 GenomeRNAi:41190 NextBio:822637
            Uniprot:Q9VH79
        Length = 405

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 108/222 (48%), Positives = 161/222 (72%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             +P E D  +  +  ++  ++SYS +GGL  Q +E+RE++ELPL + +L+ ++GI PP+GV
Sbjct:   130 VPPEADSTISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGV 189

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LL+GPPG GKT+LA+A+A +  A+F++VV S  + KY+GE  R++R++F  A+ + P II
Sbjct:   190 LLFGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSII 249

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFD+   +K+IMATNR D LDPALL
Sbjct:   250 FIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALL 309

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             RPGRLDRKIE+PLP+ + +  +     + +    ++D E ++
Sbjct:   310 RPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDII 351


>GENEDB_PFALCIPARUM|PFD0665c [details] [associations]
            symbol:PFD0665c "26s proteasome aaa-ATPase
            subunit Rpt3, putative" species:5833 "Plasmodium falciparum"
            [GO:0005838 "proteasome regulatory particle" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 GO:GO:0016887 GO:GO:0006511 HSSP:Q01853
            EMBL:AL844503 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK ProtClustDB:PTZ00454 GO:GO:0005838
            RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1 IntAct:Q8I1V1
            MINT:MINT-1573247 PRIDE:Q8I1V1 EnsemblProtists:PFD0665c:mRNA
            GeneID:812570 KEGG:pfa:PFD0665c EuPathDB:PlasmoDB:PF3D7_0413600
            Uniprot:Q8I1V1
        Length = 392

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 113/234 (48%), Positives = 165/234 (70%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             +I+  LP E D  +  +   +  NV Y+ +GGL  Q +E++E++ELPL  PEL+ ++GI+
Sbjct:   111 SIVNILPSESDSSIQLLQITERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIE 170

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
             PP G+L+YGPPGTGKT+L +A+A+     F+ VV S  + KY+GE  R++R++F  AR++
Sbjct:   171 PPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLAREN 230

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIF+DE+DAI  +RF   T ADRE+QR L+ELLNQ+DGFD+   VK+IMATNR D L
Sbjct:   231 SPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTL 290

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA-VVKLAEVS 237
             DPALLRPGRLDRKIE PLP+ + +  I +   + +    +++ E+ VV+  ++S
Sbjct:   291 DPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVVRTDKIS 344


>UNIPROTKB|Q8I1V1 [details] [associations]
            symbol:PFD0665c "26S proteasome AAA-ATPase subunit RPT3,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0006511 "ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0016887
            GO:GO:0006511 HSSP:Q01853 EMBL:AL844503 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK ProtClustDB:PTZ00454
            GO:GO:0005838 RefSeq:XP_001351444.1 ProteinModelPortal:Q8I1V1
            IntAct:Q8I1V1 MINT:MINT-1573247 PRIDE:Q8I1V1
            EnsemblProtists:PFD0665c:mRNA GeneID:812570 KEGG:pfa:PFD0665c
            EuPathDB:PlasmoDB:PF3D7_0413600 Uniprot:Q8I1V1
        Length = 392

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 113/234 (48%), Positives = 165/234 (70%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             +I+  LP E D  +  +   +  NV Y+ +GGL  Q +E++E++ELPL  PEL+ ++GI+
Sbjct:   111 SIVNILPSESDSSIQLLQITERPNVKYTDLGGLDMQKQEMKEAVELPLTCPELYEKIGIE 170

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
             PP G+L+YGPPGTGKT+L +A+A+     F+ VV S  + KY+GE  R++R++F  AR++
Sbjct:   171 PPMGILIYGPPGTGKTMLVKAVANETQVTFIGVVGSEFVQKYLGEGPRMVRDVFRLAREN 230

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIF+DE+DAI  +RF   T ADRE+QR L+ELLNQ+DGFD+   VK+IMATNR D L
Sbjct:   231 SPSIIFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTL 290

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA-VVKLAEVS 237
             DPALLRPGRLDRKIE PLP+ + +  I +   + +    +++ E+ VV+  ++S
Sbjct:   291 DPALLRPGRLDRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIESFVVRTDKIS 344


>ZFIN|ZDB-GENE-030131-666 [details] [associations]
            symbol:psmc3 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 3" species:7955 "Danio rerio" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 ZFIN:ZDB-GENE-030131-666 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030163 GO:GO:0017111 GeneTree:ENSGT00560000077230
            TIGRFAMs:TIGR01242 EMBL:BX957297 IPI:IPI00817732 PRIDE:F1QJQ2
            Ensembl:ENSDART00000133705 ArrayExpress:F1QJQ2 Bgee:F1QJQ2
            Uniprot:F1QJQ2
        Length = 427

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 115/230 (50%), Positives = 161/230 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   148 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 207

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   208 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 267

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   268 PSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILD 327

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE P+PNE++R  I++IH+  +    ++++E + +  +
Sbjct:   328 PALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVCPDVNFEELARCTD 377


>UNIPROTKB|F1MG70 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 OMA:DQTTNVK
            IPI:IPI00718026 GeneTree:ENSGT00550000074962 EMBL:DAAA02047067
            Ensembl:ENSBTAT00000012391 ArrayExpress:F1MG70 Uniprot:F1MG70
        Length = 417

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/226 (50%), Positives = 159/226 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   138 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 197

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   198 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 257

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   258 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 317

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V
Sbjct:   318 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYV 363


>UNIPROTKB|Q3T030 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 HSSP:Q9WZ49 GO:GO:0001824 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 EMBL:BC102595 IPI:IPI00718026
            RefSeq:NP_001030255.1 UniGene:Bt.48909 ProteinModelPortal:Q3T030
            SMR:Q3T030 STRING:Q3T030 PRIDE:Q3T030 GeneID:510029 KEGG:bta:510029
            CTD:5704 InParanoid:Q3T030 OrthoDB:EOG4KD6M4 NextBio:20869245
            ArrayExpress:Q3T030 Uniprot:Q3T030
        Length = 418

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/226 (50%), Positives = 159/226 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V
Sbjct:   319 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYV 364


>UNIPROTKB|E2RH48 [details] [associations]
            symbol:PSMC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0022624 "proteasome accessory complex"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0001824 "blastocyst development"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 TIGRFAMs:TIGR01242 KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 EMBL:AAEX03000950
            RefSeq:XP_003638879.1 ProteinModelPortal:E2RH48 SMR:E2RH48
            PRIDE:E2RH48 Ensembl:ENSCAFT00000008685 GeneID:100855613
            KEGG:cfa:100855613 NextBio:20852115 Uniprot:E2RH48
        Length = 418

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/226 (50%), Positives = 159/226 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V
Sbjct:   319 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYV 364


>UNIPROTKB|J9NWA6 [details] [associations]
            symbol:LOC100687152 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 TIGRFAMs:TIGR01242
            EMBL:AAEX03026457 Ensembl:ENSCAFT00000026372 OMA:REAVEQP
            Uniprot:J9NWA6
        Length = 434

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 114/227 (50%), Positives = 159/227 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GGL  QI+EL E+I LP+ + E F  +GI+P
Sbjct:   155 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQP 214

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   215 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 274

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DA G +RF    + DRE+QRT++ELLNQLDGF    +VK+I ATNR D+LD
Sbjct:   275 PSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILD 334

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             PALLR GRLD+KIE P+PNE++R  I++IH+  +    +++YE + +
Sbjct:   335 PALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 381


>UNIPROTKB|P43686 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0001824 "blastocyst development" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0022624 "proteasome accessory
            complex" evidence=ISS] [GO:0000502 "proteasome complex"
            evidence=TAS] [GO:0006508 "proteolysis" evidence=TAS] [GO:0016887
            "ATPase activity" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006521 "regulation of cellular amino acid metabolic process"
            evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
            [GO:0006977 "DNA damage response, signal transduction by p53 class
            mediator resulting in cell cycle arrest" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016032 "viral reproduction"
            evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
            [GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0031145
            "anaphase-promoting complex-dependent proteasomal
            ubiquitin-dependent protein catabolic process" evidence=TAS]
            [GO:0034641 "cellular nitrogen compound metabolic process"
            evidence=TAS] [GO:0042590 "antigen processing and presentation of
            exogenous peptide antigen via MHC class I" evidence=TAS]
            [GO:0042981 "regulation of apoptotic process" evidence=TAS]
            [GO:0044281 "small molecule metabolic process" evidence=TAS]
            [GO:0051436 "negative regulation of ubiquitin-protein ligase
            activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
            "positive regulation of ubiquitin-protein ligase activity involved
            in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
            ubiquitin-protein ligase activity involved in mitotic cell cycle"
            evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
            [GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
            [GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
            [GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
            "M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
            "mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
            and presentation of peptide antigen via MHC class I" evidence=TAS]
            [GO:0002479 "antigen processing and presentation of exogenous
            peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0006200 "ATP catabolic process" evidence=TAS]
            Reactome:REACT_13505 Reactome:REACT_578 Reactome:REACT_71
            Reactome:REACT_21257 Reactome:REACT_6850 Reactome:REACT_111217
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 Reactome:REACT_111102
            Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0006915
            GO:GO:0010467 GO:GO:0016071 Reactome:REACT_115566 GO:GO:0005654
            GO:GO:0002479 GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977
            GO:GO:0042981 GO:GO:0000082 GO:GO:0016887 GO:GO:0051436
            GO:GO:0000216 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
            GO:GO:0051437 GO:GO:0006521 GO:GO:0001824 Reactome:REACT_383
            EMBL:AC007842 eggNOG:COG1222 TIGRFAMs:TIGR01242 HOVERGEN:HBG000109
            GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 EMBL:AF038965 EMBL:U27515 EMBL:AF020736
            EMBL:BT007232 EMBL:BC000343 EMBL:BC010396 EMBL:BC014488
            IPI:IPI00020042 IPI:IPI00216770 RefSeq:NP_006494.1
            RefSeq:NP_694546.1 UniGene:Hs.211594 PDB:2DVW PDBsum:2DVW
            ProteinModelPortal:P43686 SMR:P43686 DIP:DIP-29274N IntAct:P43686
            MINT:MINT-5004247 STRING:P43686 PhosphoSite:P43686 DMDM:20532409
            OGP:P43686 PaxDb:P43686 PRIDE:P43686 DNASU:5704
            Ensembl:ENST00000157812 Ensembl:ENST00000455878 GeneID:5704
            KEGG:hsa:5704 UCSC:uc002omq.3 UCSC:uc002omr.3 GeneCards:GC19P040477
            HGNC:HGNC:9551 HPA:HPA002044 HPA:HPA005471 MIM:602707
            neXtProt:NX_P43686 PharmGKB:PA33896 InParanoid:P43686
            PhylomeDB:P43686 ChiTaRS:PSMC4 EvolutionaryTrace:P43686
            GenomeRNAi:5704 NextBio:22160 ArrayExpress:P43686 Bgee:P43686
            CleanEx:HS_PSMC4 Genevestigator:P43686 GermOnline:ENSG00000013275
            Uniprot:P43686
        Length = 418

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/226 (50%), Positives = 159/226 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V
Sbjct:   319 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYV 364


>UNIPROTKB|Q4R7L3 [details] [associations]
            symbol:PSMC4 "26S protease regulatory subunit 6B"
            species:9541 "Macaca fascicularis" [GO:0022624 "proteasome
            accessory complex" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624 EMBL:AB168803
            ProteinModelPortal:Q4R7L3 SMR:Q4R7L3 PRIDE:Q4R7L3 Uniprot:Q4R7L3
        Length = 418

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/226 (50%), Positives = 159/226 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V
Sbjct:   319 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYV 364


>MGI|MGI:1346093 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0022624
            "proteasome accessory complex" evidence=IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 MGI:MGI:1346093
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 GO:GO:0001824 EMBL:CH466593 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 GO:GO:0022624
            HOGENOM:HOG000225143 KO:K03063 OMA:DQTTNVK CTD:5704
            OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962 EMBL:L76223
            EMBL:AB040869 EMBL:AK077507 EMBL:AK153991 EMBL:AK160718
            EMBL:AK167041 EMBL:BC012708 IPI:IPI00108895 RefSeq:NP_036004.2
            UniGene:Mm.29582 PDB:3AJI PDBsum:3AJI ProteinModelPortal:P54775
            SMR:P54775 IntAct:P54775 STRING:P54775 PhosphoSite:P54775
            REPRODUCTION-2DPAGE:P54775 PaxDb:P54775 PRIDE:P54775
            Ensembl:ENSMUST00000032824 GeneID:23996 KEGG:mmu:23996
            InParanoid:Q6ZWN9 EvolutionaryTrace:P54775 NextBio:303909
            Bgee:P54775 Genevestigator:P54775 GermOnline:ENSMUSG00000030603
            Uniprot:P54775
        Length = 418

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/226 (50%), Positives = 159/226 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V
Sbjct:   319 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYV 364


>RGD|621102 [details] [associations]
            symbol:Psmc4 "proteasome (prosome, macropain) 26S subunit,
            ATPase, 4" species:10116 "Rattus norvegicus" [GO:0001824
            "blastocyst development" evidence=IEA;ISO] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
            evidence=IEA;ISO] [GO:0006200 "ATP catabolic process" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0022624 "proteasome
            accessory complex" evidence=ISO;ISS] [GO:0030163 "protein catabolic
            process" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            RGD:621102 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016887
            GO:GO:0030163 GO:GO:0001824 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOVERGEN:HBG000109 GO:GO:0022624 HOGENOM:HOG000225143 KO:K03063
            OMA:DQTTNVK CTD:5704 OrthoDB:EOG4KD6M4 GeneTree:ENSGT00550000074962
            EMBL:D50695 EMBL:BC063145 IPI:IPI00210158 RefSeq:NP_476463.1
            UniGene:Rn.11341 PDB:2DWZ PDBsum:2DWZ ProteinModelPortal:Q63570
            SMR:Q63570 IntAct:Q63570 STRING:Q63570 PhosphoSite:Q63570
            PRIDE:Q63570 Ensembl:ENSRNOT00000025819 GeneID:117262
            KEGG:rno:117262 UCSC:RGD:621102 InParanoid:Q63570
            EvolutionaryTrace:Q63570 NextBio:620144 Genevestigator:Q63570
            GermOnline:ENSRNOG00000018994 Uniprot:Q63570
        Length = 418

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/226 (50%), Positives = 159/226 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALLRPGRLDRKIE PLP+ + +  I     + +    E+D E  V
Sbjct:   319 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYV 364


>ASPGD|ASPL0000036562 [details] [associations]
            symbol:AN2904 species:162425 "Emericella nidulans"
            [GO:0070682 "proteasome regulatory particle assembly" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 EMBL:BN001306 GO:GO:0030163 GO:GO:0000502
            GO:GO:0017111 TIGRFAMs:TIGR01242 EnsemblFungi:CADANIAT00010185
            OMA:EDAYSAQ Uniprot:C8VJ79
        Length = 422

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 113/223 (50%), Positives = 162/223 (72%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP E D  +  +   +  +V+Y+ VGGL  Q +E+RE++ELPL + +L+ ++GI PP+GV
Sbjct:   144 LPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTHFDLYKQIGIDPPRGV 203

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKT+L +A+A++  A+F++V  S  + KY+GE  R++R++F  AR++ P II
Sbjct:   204 LLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAII 263

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGF+Q   VK+IMATNR D LDPALL
Sbjct:   264 FIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQTSNVKVIMATNRADTLDPALL 323

Query:   190 RPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             RPGRLDRKIE P L + + R  I    A+ ++   E+D ++++
Sbjct:   324 RPGRLDRKIEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLI 366


>POMBASE|SPCC576.10c [details] [associations]
            symbol:rpt3 "19S proteasome regulatory subunit Rpt3
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
            "ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0008540 "proteasome regulatory particle,
            base subcomplex" evidence=ISO] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0004175 "endopeptidase activity" evidence=ISO]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPCC576.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0006511
            eggNOG:COG1222 TIGRFAMs:TIGR01242 HOGENOM:HOG000225143
            GO:GO:0008540 KO:K03063 OMA:DQTTNVK PIR:T41420 RefSeq:NP_588437.1
            ProteinModelPortal:O74894 SMR:O74894 STRING:O74894 PRIDE:O74894
            EnsemblFungi:SPCC576.10c.1 GeneID:2539539 KEGG:spo:SPCC576.10c
            OrthoDB:EOG46HKKC NextBio:20800700 Uniprot:O74894
        Length = 389

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 115/229 (50%), Positives = 160/229 (69%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP E D  +  +  ++  +VSY+ VGGL  Q +E+RE++ELPL   +L+ ++GI PP+GV
Sbjct:   112 LPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGV 171

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKT+L +A+A++  ANF++VV S  + KY+GE  R++R++F  AR++ P II
Sbjct:   172 LLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAII 231

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F+DEIDAI  +RF   T ADRE+QR L+ELL Q+DGFDQ   VK+IMATNR D LDPALL
Sbjct:   232 FIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALL 291

Query:   190 RPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237
             RPGRLDRKIE P   + + R  + +   A +    E+D +  +   + S
Sbjct:   292 RPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDAS 340


>CGD|CAL0002261 [details] [associations]
            symbol:RPT5 species:5476 "Candida albicans" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0002261 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000086 EMBL:AACQ01000085 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 RefSeq:XP_715432.1 RefSeq:XP_715502.1
            ProteinModelPortal:Q5A0X3 STRING:Q5A0X3 GeneID:3642858
            GeneID:3642911 KEGG:cal:CaO19.10635 KEGG:cal:CaO19.3123
            Uniprot:Q5A0X3
        Length = 454

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 113/211 (53%), Positives = 149/211 (70%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  V  M  ++     YS +GGL  QI EL E++ LP+   + F  +GIKP
Sbjct:   174 VLDTLPSEYDSRVKAMEVDEKPTEDYSDIGGLDKQIEELIEAVVLPMKQADKFKNLGIKP 233

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG L+YGPPGTGKTLLARA A+   A FLK+ +  ++  +IG+ A+L+R+ F  A++  
Sbjct:   234 PKGALMYGPPGTGKTLLARACAAQSGATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKA 293

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    S DRE+QRT++ELLNQLDGF    +VK++ ATNR D LD
Sbjct:   294 PTIIFIDELDAIGTKRFDSDKSGDREVQRTMLELLNQLDGFGSDDRVKVLAATNRVDTLD 353

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
             PALLR GRLDRKIE PLP+E++R  +LKIHA
Sbjct:   354 PALLRSGRLDRKIEFPLPSEEARESVLKIHA 384


>WB|WBGene00015688 [details] [associations]
            symbol:C10G11.8 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 eggNOG:COG1222
            TIGRFAMs:TIGR01242 HOGENOM:HOG000225143 KO:K03062
            GeneTree:ENSGT00550000074818 HSSP:Q9LCZ4 EMBL:FO080499 PIR:D87802
            RefSeq:NP_491811.1 ProteinModelPortal:P91025 SMR:P91025
            STRING:P91025 PaxDb:P91025 EnsemblMetazoa:C10G11.8 GeneID:172324
            KEGG:cel:CELE_C10G11.8 UCSC:C10G11.8 CTD:172324 WormBase:C10G11.8
            InParanoid:P91025 OMA:RGIENAN NextBio:875027 Uniprot:P91025
        Length = 438

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 110/226 (48%), Positives = 158/226 (69%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  L  ++D        E     ++  +GG   QI+EL+ES+ELPL +PE +  +GI  
Sbjct:   157 IVGVLDDKIDSNAMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPEYYEEMGITA 216

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYG PGTGKTLLA+A+A++  A F++   S ++ K  GE ARL+R++F  A++  
Sbjct:   217 PKGVILYGEPGTGKTLLAKAVANSTSATFIRATGSDLVQKQSGEGARLVRQIFQMAKEQA 276

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P I+F+DEIDA+G +RF   +  ++E+QRTL+ELLNQLDGF+  G VK+IMATNR D LD
Sbjct:   277 PSIVFIDEIDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRGDVKIIMATNRIDSLD 336

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PAL+RPGR+DRKIE+P P+E++R +I  IH +G+     + YE V+
Sbjct:   337 PALIRPGRIDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVL 382


>CGD|CAL0001552 [details] [associations]
            symbol:PR26 species:5476 "Candida albicans" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0008540 "proteasome regulatory
            particle, base subcomplex" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            CGD:CAL0001552 GO:GO:0005524 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 112/223 (50%), Positives = 160/223 (71%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP E D  +  +  +   +V+Y+ VGGL  Q +E++E++ELPL   +L+ ++GI PP+GV
Sbjct:   133 LPPEADSSISIVGEDQKPDVTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGV 192

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKT+L +A+A++  A+F+++  S  + KY+GE  R++R++F  AR++ P II
Sbjct:   193 LLYGPPGTGKTMLVKAVANSTTASFIRINGSEFVQKYLGEGPRMVRDVFRLARENSPAII 252

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LDPALL
Sbjct:   253 FIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTVKVIMATNRADTLDPALL 312

Query:   190 RPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             RPGRLDRKIE P L + + R  I    A+ ++   E D ++++
Sbjct:   313 RPGRLDRKIEFPSLKDRRERRLIFSTIASKMSLAPEADLDSLI 355


>UNIPROTKB|Q5A0L8 [details] [associations]
            symbol:PR26 "Likely 26S proteasome regulatory particle
            ATPase Rpt3p" species:237561 "Candida albicans SC5314" [GO:0005838
            "proteasome regulatory particle" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005937
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 CGD:CAL0001552
            GO:GO:0005524 GO:GO:0005737 GO:GO:0030163 GO:GO:0017111
            EMBL:AACQ01000088 EMBL:AACQ01000087 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03063 GO:GO:0005838 RefSeq:XP_715269.1
            RefSeq:XP_715334.1 ProteinModelPortal:Q5A0L8 SMR:Q5A0L8
            STRING:Q5A0L8 GeneID:3642981 GeneID:3643038 KEGG:cal:CaO19.13215
            KEGG:cal:CaO19.5793 Uniprot:Q5A0L8
        Length = 411

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 112/223 (50%), Positives = 160/223 (71%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP E D  +  +  +   +V+Y+ VGGL  Q +E++E++ELPL   +L+ ++GI PP+GV
Sbjct:   133 LPPEADSSISIVGEDQKPDVTYADVGGLDMQKQEIKEAVELPLTQGDLYSQIGIDPPRGV 192

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKT+L +A+A++  A+F+++  S  + KY+GE  R++R++F  AR++ P II
Sbjct:   193 LLYGPPGTGKTMLVKAVANSTTASFIRINGSEFVQKYLGEGPRMVRDVFRLARENSPAII 252

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LDPALL
Sbjct:   253 FIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTSTVKVIMATNRADTLDPALL 312

Query:   190 RPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             RPGRLDRKIE P L + + R  I    A+ ++   E D ++++
Sbjct:   313 RPGRLDRKIEFPSLKDRRERRLIFSTIASKMSLAPEADLDSLI 355


>ZFIN|ZDB-GENE-030131-5083 [details] [associations]
            symbol:psmc4 "proteasome (prosome, macropain) 26S
            subunit, ATPase, 4" species:7955 "Danio rerio" [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0000502 "proteasome complex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR005937
            Pfam:PF00004 SMART:SM00382 ZFIN:ZDB-GENE-030131-5083 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0000502 HSSP:Q01853 GO:GO:0017111
            TIGRFAMs:TIGR01242 HOVERGEN:HBG000109 EMBL:BC055215 IPI:IPI00509630
            UniGene:Dr.76514 ProteinModelPortal:Q7SXX0 SMR:Q7SXX0 STRING:Q7SXX0
            PRIDE:Q7SXX0 InParanoid:Q7SXX0 ArrayExpress:Q7SXX0 Bgee:Q7SXX0
            Uniprot:Q7SXX0
        Length = 418

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 112/226 (49%), Positives = 158/226 (69%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             ++  LP E D  +  +  +   +V YS +GG+  Q +E+RE++ELPL + EL+ ++GI P
Sbjct:   139 LVDVLPPEADSSIMMLTSDQKPDVLYSDIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+GVL+YGPPG GKT+LA+A+A +  A F++VV S  + KY+GE  R++R++F  A+++ 
Sbjct:   199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK+IMATNR D LD
Sbjct:   259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PALL PGRLDRKIE PLP+ + +  +     + +    E+D E  V
Sbjct:   319 PALLCPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEEVDLEDYV 364


>WB|WBGene00004505 [details] [associations]
            symbol:rpt-5 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
            [GO:0009378 "four-way junction helicase activity" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
            larval development" evidence=IMP] [GO:0008340 "determination of
            adult lifespan" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
            GO:GO:0005737 GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853
            GO:GO:0017111 GeneTree:ENSGT00560000077230 EMBL:FO080337
            eggNOG:COG1222 TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143
            OMA:GALMYGP PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371
            SMR:O76371 IntAct:O76371 MINT:MINT-211164 STRING:O76371
            PaxDb:O76371 EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2
            GeneID:172238 KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238
            WormBase:F56H1.4 InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 109/230 (47%), Positives = 160/230 (69%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GG   QI+EL E++ LP+ + + F+ +GI P
Sbjct:   151 ILEKLPAEYDSRVKAMEVDERPTEQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHP 210

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKT++ARA+A+   + FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   211 PKGVLMYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 270

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF     +K+I ATNR DVLD
Sbjct:   271 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRIDVLD 330

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE+P PNE +R  I++IH+  +  + ++++E + +  +
Sbjct:   331 PALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELARCTD 380


>UNIPROTKB|O76371 [details] [associations]
            symbol:rpt-5 "Protein RPT-5" species:6239 "Caenorhabditis
            elegans" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0008340 GO:GO:0009792 GO:GO:0005737
            GO:GO:0002119 GO:GO:0000003 GO:GO:0030163 HSSP:Q01853 GO:GO:0017111
            GeneTree:ENSGT00560000077230 EMBL:FO080337 eggNOG:COG1222
            TIGRFAMs:TIGR01242 KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP
            PIR:T33155 RefSeq:NP_491672.1 ProteinModelPortal:O76371 SMR:O76371
            IntAct:O76371 MINT:MINT-211164 STRING:O76371 PaxDb:O76371
            EnsemblMetazoa:F56H1.4.1 EnsemblMetazoa:F56H1.4.2 GeneID:172238
            KEGG:cel:CELE_F56H1.4 UCSC:F56H1.4.2 CTD:172238 WormBase:F56H1.4
            InParanoid:O76371 NextBio:874627 Uniprot:O76371
        Length = 430

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 109/230 (47%), Positives = 160/230 (69%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     YS +GG   QI+EL E++ LP+ + + F+ +GI P
Sbjct:   151 ILEKLPAEYDSRVKAMEVDERPTEQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHP 210

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGVL+YGPPGTGKT++ARA+A+   + FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   211 PKGVLMYGPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 270

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF     +K+I ATNR DVLD
Sbjct:   271 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNDDIKVIAATNRIDVLD 330

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             PALLR GRLDRKIE+P PNE +R  I++IH+  +  + ++++E + +  +
Sbjct:   331 PALLRSGRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELARCTD 380


>ASPGD|ASPL0000010049 [details] [associations]
            symbol:AN4236 species:162425 "Emericella nidulans"
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0070682 "proteasome
            regulatory particle assembly" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005737 EMBL:BN001302 GO:GO:0030163
            GO:GO:0017111 EMBL:AACD01000068 eggNOG:COG1222 TIGRFAMs:TIGR01242
            KO:K03065 HOGENOM:HOG000225143 OMA:GALMYGP OrthoDB:EOG40VZZ2
            RefSeq:XP_661840.1 ProteinModelPortal:Q5B5E4 STRING:Q5B5E4
            EnsemblFungi:CADANIAT00004422 GeneID:2873654 KEGG:ani:AN4236.2
            Uniprot:Q5B5E4
        Length = 465

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 111/227 (48%), Positives = 155/227 (68%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     Y+ +GGL  QI E+ E+I  P+   E F ++GIK 
Sbjct:   185 ILDTLPAEYDNRVKAMEVDEKPTEKYTDIGGLDKQIEEIVEAIVWPMKEAERFKKLGIKA 244

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKG L+YGPPGTGKTLLARA A+  +A FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   245 PKGALMYGPPGTGKTLLARACAAETNATFLKLAGPQLVQMFIGDGAKLVRDCFALAKEKA 304

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DA+G +RF    S DRE+QRT++ELLNQLDGF    ++K++ ATNR DVLD
Sbjct:   305 PSIIFIDELDAVGTKRFDSEKSGDREVQRTMLELLNQLDGFASDDRIKVLAATNRVDVLD 364

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             PALLR GRLDRKIE PLPNE++R  IL+IH+  +     +++  + +
Sbjct:   365 PALLRSGRLDRKIEFPLPNEEARANILQIHSRKMTVEDSVNWAELAR 411


>UNIPROTKB|F1MWE0 [details] [associations]
            symbol:PSMC3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0022624 "proteasome accessory complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0030163
            GO:GO:0017111 GeneTree:ENSGT00560000077230 GO:GO:0001824
            TIGRFAMs:TIGR01242 OMA:GALMYGP EMBL:DAAA02041602 IPI:IPI00701790
            UniGene:Bt.49089 Ensembl:ENSBTAT00000028983 NextBio:20868523
            Uniprot:F1MWE0
        Length = 456

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 116/246 (47%), Positives = 162/246 (65%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRES----------------IE 49
             I+  LP E D  V  M  ++     YS +GGL  QI+E+RE+                I 
Sbjct:   161 ILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQEVREARHLTSLLCLSASLVEAIV 220

Query:    50 LPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGE 109
             LP+ + E F  +GI+PPKGVL+YGPPGTGKTLLARA A+   A FLK+    ++  +IG+
Sbjct:   221 LPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 280

Query:   110 SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169
              A+L+R+ F  A++  P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQLDGF   
Sbjct:   281 GAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN 340

Query:   170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA 229
              +VK+I ATNR D+LDPALLR GRLDRKIE P+PNE++R  I++IH+  +    +++YE 
Sbjct:   341 TQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEE 400

Query:   230 VVKLAE 235
             + +  +
Sbjct:   401 LARCTD 406


>FB|FBgn0028684 [details] [associations]
            symbol:Rpt5 "Regulatory particle triple-A ATPase 5"
            species:7227 "Drosophila melanogaster" [GO:0008540 "proteasome
            regulatory particle, base subcomplex" evidence=ISS;NAS] [GO:0004175
            "endopeptidase activity" evidence=IDA;NAS] [GO:0005838 "proteasome
            regulatory particle" evidence=ISS;IDA] [GO:0006508 "proteolysis"
            evidence=ISS;IDA] [GO:0030163 "protein catabolic process"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0009987 "cellular process"
            evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0006508 GO:GO:0016887 GO:GO:0004175
            GO:GO:0030163 HSSP:Q01853 TIGRFAMs:TIGR01242 GO:GO:0008540
            ChiTaRS:PSMC3 FlyBase:FBgn0028684 EMBL:AF134402
            ProteinModelPortal:Q9XZC3 STRING:Q9XZC3 PRIDE:Q9XZC3
            InParanoid:Q9XZC3 ArrayExpress:Q9XZC3 Bgee:Q9XZC3 Uniprot:Q9XZC3
        Length = 431

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 109/223 (48%), Positives = 154/223 (69%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             I+  LP E D  V  M  ++     +S +GGL  QI+EL E++ LP+ + E F  +GI P
Sbjct:   153 ILETLPAEYDARVKAMEVDERPTEQFSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHP 212

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             PKGV+LYGPPGTGKTLLARA A+   + FLK+    ++  +IG+ A+L+R+ F  A++  
Sbjct:   213 PKGVILYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 272

Query:   126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQL+GF     +K+I ATNR D+L 
Sbjct:   273 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLNGFSSTADIKVIAATNRVDIL- 331

Query:   186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 228
             PALLR GRLDRKIE P PNE++R  I++IH+  +    ++++E
Sbjct:   332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFE 374


>SGD|S000002802 [details] [associations]
            symbol:RPT3 "ATPase of the 19S regulatory particle of the 26S
            proteasome" species:4932 "Saccharomyces cerevisiae" [GO:0008540
            "proteasome regulatory particle, base subcomplex" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0045899 "positive regulation of RNA polymerase II
            transcriptional preinitiation complex assembly" evidence=IMP]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0070682
            "proteasome regulatory particle assembly" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005937 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            SGD:S000002802 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            EMBL:BK006938 GO:GO:0006511 GO:GO:0017111 GO:GO:0045899 EMBL:U32274
            KO:K07101 RefSeq:NP_010687.3 GeneID:852008 KEGG:sce:YDR399W
            GO:GO:0070682 eggNOG:COG1222 TIGRFAMs:TIGR01242
            HOGENOM:HOG000225143 GO:GO:0008540 PDB:4B4T PDBsum:4B4T KO:K03063
            OMA:DQTTNVK GeneTree:ENSGT00550000074962 OrthoDB:EOG46HKKC
            EMBL:X73570 EMBL:U06229 PIR:S69678 RefSeq:NP_010682.3 PDB:2DZN
            PDB:2DZO PDBsum:2DZN PDBsum:2DZO ProteinModelPortal:P33298
            SMR:P33298 DIP:DIP-1587N IntAct:P33298 MINT:MINT-383865
            STRING:P33298 PaxDb:P33298 PeptideAtlas:P33298 EnsemblFungi:YDR394W
            GeneID:852003 KEGG:sce:YDR394W EvolutionaryTrace:P33298
            NextBio:970192 Genevestigator:P33298 GermOnline:YDR394W
            Uniprot:P33298
        Length = 428

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 110/223 (49%), Positives = 159/223 (71%)

Query:    10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             LP + D  +  M   +  +V+Y+ VGGL  Q +E+RE++ELPL+  +L+ ++GI PP+GV
Sbjct:   150 LPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGV 209

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             LLYGPPGTGKT+L +A+A++  A F++V  S  + KY+GE  R++R++F  AR++ P II
Sbjct:   210 LLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSII 269

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F+DE+D+I  +RF   T +DRE+QR L+ELL Q+DGFDQ   VK+IMATNR D LDPALL
Sbjct:   270 FIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALL 329

Query:   190 RPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             RPGRLDRKIE P L + + R  I    A+ ++   E D ++++
Sbjct:   330 RPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372


>UNIPROTKB|F1LZ09 [details] [associations]
            symbol:F1LZ09 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR005937 Pfam:PF00004 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0030163
            GO:GO:0017111 TIGRFAMs:TIGR01242 IPI:IPI00780208
            Ensembl:ENSRNOT00000039743 Uniprot:F1LZ09
        Length = 369

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/205 (50%), Positives = 144/205 (70%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T++  LP E +  +  +  +   NV Y+ +G +  Q +E+ E++ELPL + EL+ ++GI 
Sbjct:    87 TLVNVLPPEAESSIMMLTSDQKPNVIYADIGSMDIQKQEVWEAMELPLTHFELYKQIGID 146

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
             PP+GVL+YGPPG GKT+LA+ +A ++ A F+ VV S  + KY+GE  R+I ++F   +++
Sbjct:   147 PPRGVLMYGPPGCGKTMLAKTVAHHMIAAFIHVVGSEFVHKYLGEGPRIIWDVFHLDKEN 206

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184
              P IIF+DEIDAI  +RF   T ADRE+QR L+ELLNQ+DGFDQ   VK IMATNR D L
Sbjct:   207 APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNISVKAIMATNRKDTL 266

Query:   185 DPALLRPGRLDRKIEIPLPNEQSRM 209
             DP LLRPG LD KIE PLP+ + R+
Sbjct:   267 DPTLLRPGHLDHKIEFPLPDHRKRL 291


>UNIPROTKB|J9NWB0 [details] [associations]
            symbol:J9NWB0 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR005937 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
            GO:GO:0005737 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01242
            GeneTree:ENSGT00550000074818 EMBL:AAEX03014432
            Ensembl:ENSCAFT00000039483 OMA:AGSELIQ Uniprot:J9NWB0
        Length = 436

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 102/228 (44%), Positives = 150/228 (65%)

Query:    13 EVDPVVYNMLHEDPGNV---SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
             + DP+V  M  E        +Y+ + GL +QI+E++ES+ELPL +PE +  +GIKPPKGV
Sbjct:   166 DTDPLVTVMKVEKVEKAPQETYADIRGLDNQIQEIKESLELPLTHPENYEEMGIKPPKGV 225

Query:    70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
             +LYGPPGT K     A+A+   A FL+V  S +I KY+G+  +++RE F  A +H P I+
Sbjct:   226 ILYGPPGTVK-----AVANRTSATFLRVAGSELIQKYLGDGPKVVRESFRVAEEHAPSIV 280

Query:   130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
             F+DEIDAIG RR+   +  +REIQRT++ELLNQLDGFD  G VK+IMATNR   LDPAL 
Sbjct:   281 FIDEIDAIGTRRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIKTLDPALS 340

Query:   190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237
                 L  ++  PLP+E+++  I +IH + +    ++  + ++   ++S
Sbjct:   341 HQAALTGRLS-PLPDEKTKKHIFQIHTSRMTLADDVTLDLIMAKDDLS 387


>UNIPROTKB|E2RM61 [details] [associations]
            symbol:PSMC5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000074947
            EMBL:AAEX03006359 ProteinModelPortal:E2RM61 PRIDE:E2RM61
            Ensembl:ENSCAFT00000020231 OMA:DSNCELQ NextBio:20855489
            Uniprot:E2RM61
        Length = 251

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 92/171 (53%), Positives = 126/171 (73%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:    73 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 132

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   133 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 192

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDGF+    +K++
Sbjct:   193 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVM 243


>UNIPROTKB|J3QQM1 [details] [associations]
            symbol:PSMC5 "26S protease regulatory subunit 8"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 EMBL:AC015651 ChiTaRS:PSMC5
            HGNC:HGNC:9552 Ensembl:ENST00000582130 Uniprot:J3QQM1
        Length = 263

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 90/161 (55%), Positives = 120/161 (74%)

Query:     5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK 64
             T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI 
Sbjct:   103 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA 162

Query:    65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH 124
              PKGVLLYGPPGTGKTLLARA+A + D  F++V  S ++ K+IGE AR++RE+F  AR+H
Sbjct:   163 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 222

Query:   125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165
              P IIFMDEID+IG  R   G+  D E+QRT++ELLNQLDG
Sbjct:   223 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDG 263


>FB|FBgn0032450 [details] [associations]
            symbol:CG5776 species:7227 "Drosophila melanogaster"
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0005783
            "endoplasmic reticulum" evidence=ISS] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 EMBL:AE014134 GO:GO:0006200 GO:GO:0016887 HSSP:Q01853
            eggNOG:COG0464 KO:K14575 GeneTree:ENSGT00700000104502 OMA:MLLRCVA
            EMBL:AY051725 RefSeq:NP_609585.1 UniGene:Dm.8715 SMR:Q9VK63
            EnsemblMetazoa:FBtr0080407 EnsemblMetazoa:FBtr0329925 GeneID:34680
            KEGG:dme:Dmel_CG5776 UCSC:CG5776-RA FlyBase:FBgn0032450
            InParanoid:Q9VK63 OrthoDB:EOG4547DV GenomeRNAi:34680 NextBio:789659
            Uniprot:Q9VK63
        Length = 799

 Score = 481 (174.4 bits), Expect = 3.5e-45, P = 3.5e-45
 Identities = 98/232 (42%), Positives = 150/232 (64%)

Query:     6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
             +  AL R     +  +L E P NV +S +GG S+    ++++IE PL++ + F R+GIKP
Sbjct:   510 LQAALTRIKPSAMREVLIECP-NVQWSDIGGQSELRLAMQQAIEWPLLHADKFQRLGIKP 568

Query:    66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
             P+G+L++GPPG  KT++A+A+A+    NFL +    +   ++GES R +RE+F  AR   
Sbjct:   569 PRGILMFGPPGCSKTMIAKALATESKLNFLSIKGPELFSMWVGESERAVREVFRKARQVA 628

Query:   126 PCIIFMDEIDAIGGRRFS-EGTSADREI-QRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183
             P I+F DEIDAIGG R   +G+S+   + +R L +LL +LDG + L  V ++ ATNRPD+
Sbjct:   629 PAIVFFDEIDAIGGERSEGDGSSSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDM 688

Query:   184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             +D ALLRPGR+DR + + LP  ++R EILKI    +    ++D E +V+L E
Sbjct:   689 IDKALLRPGRIDRILYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQLTE 740

 Score = 210 (79.0 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 55/214 (25%), Positives = 115/214 (53%)

Query:    34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-- 91
             +GGL  Q++ + ES+E  L    L    G++  +G+LLYG  G GK+++  A+ +  +  
Sbjct:   274 IGGLDRQLQLVEESMEYALGFRTL--PAGLRVSRGLLLYGATGCGKSMVLEAMCAVAEER 331

Query:    92 ----ANFLKVVSSAIIDKYIGESARLIREMFGYARDH--QPCIIFMDEIDAIGGRRFSEG 145
                    +++ S  +  K++GE+ + +  +F  A +H   P ++ ++++  +  ++  E 
Sbjct:   332 SQGHVQLIRINSGEVYSKFLGETEQKLGAIFERAYNHYPHPTLLLIEDVHNLCPKQ--EN 389

Query:   146 TSADREIQRTLMELLNQLDGFDQL-GKVKMIMATNRP-DVLDPALLRPGRLDRKIEIPLP 203
             +   + +    + LL+QL    QL G    ++AT+   D L P++ R GRLD ++E+  P
Sbjct:   390 SDLVKRVSLAFLSLLDQLSSPSQLKGSKTFVLATSSQIDTLHPSIRRAGRLDNEVELGAP 449

Query:   204 NEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237
             + Q+R+EI++     + +H ++  E V  +A ++
Sbjct:   450 SSQARLEIVRCLIKSV-EH-QLSDEEVEHVASIT 481


>UNIPROTKB|Q8NB90 [details] [associations]
            symbol:SPATA5 "Spermatogenesis-associated protein 5"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0007275 "multicellular organismal development" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            GO:GO:0007275 GO:GO:0005739 GO:GO:0005524 GO:GO:0005737
            GO:GO:0030154 GO:GO:0007283 HSSP:Q01853 eggNOG:COG0464
            HOGENOM:HOG000223225 KO:K14575 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 EMBL:AC021205
            EMBL:AF361489 EMBL:AF479656 EMBL:AK091384 EMBL:AC026402
            EMBL:AC097492 EMBL:AC109357 EMBL:BC048217 IPI:IPI00329583
            IPI:IPI00890715 IPI:IPI00890727 RefSeq:NP_660208.2
            UniGene:Hs.709648 ProteinModelPortal:Q8NB90 SMR:Q8NB90
            IntAct:Q8NB90 STRING:Q8NB90 PhosphoSite:Q8NB90 DMDM:308153554
            PaxDb:Q8NB90 PRIDE:Q8NB90 DNASU:166378 Ensembl:ENST00000274008
            GeneID:166378 KEGG:hsa:166378 UCSC:uc003iey.3 UCSC:uc003iez.4
            CTD:166378 GeneCards:GC04P123844 H-InvDB:HIX0022056 HGNC:HGNC:18119
            HPA:HPA036451 MIM:613940 neXtProt:NX_Q8NB90 PharmGKB:PA38294
            HOVERGEN:HBG108504 InParanoid:Q8NB90 OMA:NDIRPSA OrthoDB:EOG43FGWF
            PhylomeDB:Q8NB90 GenomeRNAi:166378 NextBio:88589 Bgee:Q8NB90
            CleanEx:HS_SPATA5 Genevestigator:Q8NB90 Uniprot:Q8NB90
        Length = 893

 Score = 478 (173.3 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 97/231 (41%), Positives = 145/231 (62%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             +T    ++A+  ++ P     +  D  NVS+S +GGL     +L +++E PL +PE F+R
Sbjct:   597 ITLKDFLQAM-NDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFIR 655

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             +GI+PPKGVLLYGPPG  KT++A+A+A+    NFL +    +++KY+GES R +RE F  
Sbjct:   656 MGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRETFRK 715

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             AR   P IIF DE+DA+   R S    A     R L +LL ++DG +QL  V ++ ATNR
Sbjct:   716 ARAVAPSIIFFDELDALAVERGSS-LGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNR 774

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             PD +D AL+RPGR+DR I +PLP+  +R EI K+    +    E+D + ++
Sbjct:   775 PDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELI 825

 Score = 421 (153.3 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 90/189 (47%), Positives = 127/189 (67%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+Y  +GGLS Q++ +RE IELPL  PELF   GI  P+GVLLYGPPGTGKT++ARA+A+
Sbjct:   350 VTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVAN 409

Query:    89 NIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
              + A ++ V++   II K+ GE+   +R++F  A    P IIF+DE+DA+  +R  EG  
Sbjct:   410 EVGA-YVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKR--EGAQ 466

Query:   148 ADREIQRTLMELLNQLDGFDQL---GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
              + E +R +  LL  +DG       G+V ++ ATNRP  LD AL RPGR D++IEI +PN
Sbjct:   467 NEVE-KRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPN 525

Query:   205 EQSRMEILK 213
              Q R++IL+
Sbjct:   526 AQDRLDILQ 534


>UNIPROTKB|E2RC37 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 CTD:166378 OMA:NDIRPSA
            EMBL:AAEX03011797 RefSeq:XP_540960.2 ProteinModelPortal:E2RC37
            Ensembl:ENSCAFT00000006393 GeneID:483840 KEGG:cfa:483840
            Uniprot:E2RC37
        Length = 893

 Score = 474 (171.9 bits), Expect = 3.3e-44, P = 3.3e-44
 Identities = 96/216 (44%), Positives = 142/216 (65%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             ++ P     +  D  NVS+S +GGL +   +L++++E PL +PE F+R+GI+PPKGVLLY
Sbjct:   608 DIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESFIRMGIQPPKGVLLY 667

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPG  KT++A+A+A+    NFL +    +++KY+GES R +RE+F  AR   P IIF D
Sbjct:   668 GPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVSPSIIFFD 727

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DA+   R S  + A     R L +LL ++DG +QL  V ++ ATNRPD +D AL+RPG
Sbjct:   728 ELDALAIERGSS-SGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALMRPG 786

Query:   193 RLDRKIEIPLPNEQSRMEILKI--HAAGIAKHGEID 226
             R+DR I +PLP+  +R EIL +  H+  I+    +D
Sbjct:   787 RIDRIIYVPLPDAATRREILNLQFHSMPISNDVNLD 822

 Score = 424 (154.3 bits), Expect = 8.3e-39, P = 8.3e-39
 Identities = 84/186 (45%), Positives = 125/186 (67%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+Y  +GGLS Q++ +RE IELPL  PELF   GI PP+GVLLYGPPGTGKT++ARA+A+
Sbjct:   350 VTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVAN 409

Query:    89 NIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
              + A ++ V++   II K+ GE+   +R++F  A    P IIF+DE+DA+  +R      
Sbjct:   410 EVGA-YVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNE 468

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
              ++ +  +L+ L++ +      G+V ++ ATNRP  LD AL RPGR D++IEI +PN   
Sbjct:   469 VEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAAD 528

Query:   208 RMEILK 213
             R++IL+
Sbjct:   529 RLDILQ 534


>UNIPROTKB|F1SIH8 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
            EMBL:FP102396 Ensembl:ENSSSCT00000005837 ArrayExpress:F1SIH8
            Uniprot:F1SIH8
        Length = 808

 Score = 472 (171.2 bits), Expect = 3.6e-44, P = 3.6e-44
 Identities = 96/211 (45%), Positives = 140/211 (66%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK G++D E + K+
Sbjct:   650 EKSRVAILKANLRKSPVAKAGDVDLEFLAKM 680

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>MGI|MGI:1927170 [details] [associations]
            symbol:Spata5 "spermatogenesis associated 5" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:1927170 GO:GO:0007275
            GO:GO:0005739 GO:GO:0005524 GO:GO:0030154 GO:GO:0007283
            eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 HSSP:Q9WZ49
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073
            CTD:166378 HOVERGEN:HBG108504 OMA:NDIRPSA OrthoDB:EOG43FGWF
            EMBL:AF049099 EMBL:AK011111 EMBL:AK144998 EMBL:AL669927
            EMBL:AL627074 EMBL:AL645968 IPI:IPI00649667 RefSeq:NP_001156983.1
            RefSeq:NP_067318.2 UniGene:Mm.172679 ProteinModelPortal:Q3UMC0
            SMR:Q3UMC0 PhosphoSite:Q3UMC0 PaxDb:Q3UMC0 PRIDE:Q3UMC0
            Ensembl:ENSMUST00000029277 Ensembl:ENSMUST00000108112 GeneID:57815
            KEGG:mmu:57815 UCSC:uc008pau.2 InParanoid:Q3UMC0 NextBio:314006
            Bgee:Q3UMC0 Genevestigator:Q3UMC0 Uniprot:Q3UMC0
        Length = 893

 Score = 473 (171.6 bits), Expect = 4.2e-44, P = 4.2e-44
 Identities = 95/219 (43%), Positives = 142/219 (64%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             ++ P     +  D  NVS+S +GGL +   +L++++E PL +P+ F R+GI+PPKGVLLY
Sbjct:   608 DIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLY 667

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPG  KT++A+A+A+    NFL +    +++KY+GES R +RE+F  AR   P IIF D
Sbjct:   668 GPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFD 727

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DA+   R S  + A     R L +LL ++DG +QL  V ++ ATNRPD +D AL+RPG
Sbjct:   728 ELDALAVERGSS-SGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPG 786

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
             R+DR I +PLP+  +R EIL +    +    E+D + +V
Sbjct:   787 RIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELV 825

 Score = 421 (153.3 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 88/189 (46%), Positives = 128/189 (67%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+Y  +GGL+ Q++ +RE IELPL  PELF   GI  P+G+LLYGPPGTGKT++ARA+A+
Sbjct:   350 VTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVAN 409

Query:    89 NIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
              + A ++ V++   II K+ GE+   +R++F  A    P IIF+DE+DA+  +R  EG  
Sbjct:   410 EVGA-YVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR--EGAQ 466

Query:   148 ADREIQRTLMELLNQLDGFDQLG---KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             ++ E +R +  LL  +DG    G   +V ++ ATNRP  LD AL RPGR D++IEI +PN
Sbjct:   467 SEVE-KRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query:   205 EQSRMEILK 213
              Q R++IL+
Sbjct:   526 AQDRLDILQ 534


>TAIR|locus:2101933 [details] [associations]
            symbol:AtCDC48B "AT3G53230" species:3702 "Arabidopsis
            thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0045732 "positive
            regulation of protein catabolic process" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0005794 GO:GO:0046686 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0005730 GO:GO:0051301
            GO:GO:0005856 GO:GO:0015031 GO:GO:0007049 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0045732 GO:GO:0009524 EMBL:AL132958 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK228801 IPI:IPI00520856 PIR:T46169
            RefSeq:NP_190891.1 UniGene:At.23168 ProteinModelPortal:Q9SCN8
            SMR:Q9SCN8 STRING:Q9SCN8 PaxDb:Q9SCN8 PRIDE:Q9SCN8
            EnsemblPlants:AT3G53230.1 GeneID:824489 KEGG:ath:AT3G53230
            GeneFarm:1909 TAIR:At3g53230 InParanoid:Q9SCN8 OMA:DIRRYEE
            PhylomeDB:Q9SCN8 Genevestigator:Q9SCN8 GermOnline:AT3G53230
            Uniprot:Q9SCN8
        Length = 815

 Score = 471 (170.9 bits), Expect = 4.8e-44, P = 4.8e-44
 Identities = 94/210 (44%), Positives = 138/210 (65%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NVS+  +GGL +  REL+E+++ P+ +PE F + G+ P KGVL YGPPG GKTLLA+AIA
Sbjct:   477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 536

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +   ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I  +R +    
Sbjct:   537 NECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGD 596

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R L +LL ++DG +    V +I ATNRPD++DPALLRPGRLD+ I IPLP+E+S
Sbjct:   597 AGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEES 656

Query:   208 RMEILK--IHAAGIAKHGEIDYEAVVKLAE 235
             R +I K  +  + +AK  ++D  A+ K  +
Sbjct:   657 RYQIFKSCLRKSPVAK--DVDLRALAKYTQ 684

 Score = 443 (161.0 bits), Expect = 5.4e-41, P = 5.4e-41
 Identities = 92/204 (45%), Positives = 133/204 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V Y  VGG+  Q+ ++RE +ELPL +P+LF  +G+KPPKG+LLYGPPG+GKTL+ARA+A+
Sbjct:   205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                A F  +    I+ K  GES   +R+ F  A  + P IIF+DEID+I  +R  E T  
Sbjct:   265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTHG 322

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E +R + +LL  +DG      V ++ ATNRP+ +DPAL R GR DR+I+I +P+E  R
Sbjct:   323 EVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGR 381

Query:   209 MEILKIHAAGIAKHGEIDYEAVVK 232
             +E+L+IH   +    ++D E V K
Sbjct:   382 LEVLRIHTKNMKLAEDVDLERVSK 405


>POMBASE|SPBC56F2.07c [details] [associations]
            symbol:SPBC56F2.07c "ribosome biogenesis factor
            recycling AAA family ATPase (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISM]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0016887 "ATPase activity"
            evidence=ISM] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            PomBase:SPBC56F2.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329671
            GenomeReviews:CU329671_GR GO:GO:0016887 PIR:T40537
            RefSeq:NP_596710.1 HSSP:Q01853 ProteinModelPortal:O60058
            PRIDE:O60058 EnsemblFungi:SPBC56F2.07c.1 GeneID:2540537
            KEGG:spo:SPBC56F2.07c eggNOG:COG0464 HOGENOM:HOG000223225 KO:K14575
            OMA:SSENMAT OrthoDB:EOG49CTH0 NextBio:20801663 GO:GO:0042273
            Uniprot:O60058
        Length = 809

 Score = 470 (170.5 bits), Expect = 5.9e-44, P = 5.9e-44
 Identities = 95/212 (44%), Positives = 139/212 (65%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E P NV +S +GG  +  ++L+ES+E PL + E F R+G++PPKGVLLYGPPG  KT+ A
Sbjct:   541 ESP-NVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITA 599

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143
             +AIA+    NF+ V    + DK++GES R +R++F  AR   P +IF DEIDA+   R  
Sbjct:   600 KAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANR-G 658

Query:   144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
             E  S+DR +      LLN+LDG + L  V ++ ATNRPD++DPAL+RPGRLDR + +  P
Sbjct:   659 EDNSSDRVVAA----LLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPP 714

Query:   204 NEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             N ++R +I+KI A  +    ++D + + +  E
Sbjct:   715 NFEARKQIVKIQAEKMKFAEDVDLDLIAEKTE 746

 Score = 468 (169.8 bits), Expect = 9.8e-44, P = 9.8e-44
 Identities = 89/194 (45%), Positives = 135/194 (69%)

Query:    26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85
             P  V++S++GGL  QI ++R+ +ELP  NPELF    I PP+GVLLYGPPGTGKT++ RA
Sbjct:   273 PSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRA 332

Query:    86 IASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145
             +A+  +A    +   +++ KY+GE+   +R++F  AR HQP IIF+DEIDA+  +R  + 
Sbjct:   333 VAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDV 392

Query:   146 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNE 205
             + A+    R +  LL  LDG    GKV +I ATNRP+ +D AL RPGRL+++IEI +P++
Sbjct:   393 SEAE---SRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDK 449

Query:   206 QSRMEILKIHAAGI 219
              +R++I+K+  +G+
Sbjct:   450 SARLDIIKLLLSGV 463


>UNIPROTKB|E9PKD5 [details] [associations]
            symbol:PSMC3 "26S protease regulatory subunit 6A"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0017111 EMBL:AC090559 HGNC:HGNC:9549 ChiTaRS:PSMC3
            IPI:IPI00978735 ProteinModelPortal:E9PKD5 SMR:E9PKD5 PRIDE:E9PKD5
            Ensembl:ENST00000524447 ArrayExpress:E9PKD5 Bgee:E9PKD5
            Uniprot:E9PKD5
        Length = 294

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 89/154 (57%), Positives = 116/154 (75%)

Query:    43 ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102
             EL E+I LP+ + E F  +GI+PPKGVL+YGPPGTGKTLLARA A+   A FLK+    +
Sbjct:   141 ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 200

Query:   103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162
             +  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + DRE+QRT++ELLNQ
Sbjct:   201 VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 260

Query:   163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDR 196
             LDGF    +VK+I ATNR D+LDPALLR GRLDR
Sbjct:   261 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDR 294


>TAIR|locus:2831844 [details] [associations]
            symbol:AtCDC48C "cell division cycle 48C" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005618 "cell wall" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005618
            EMBL:AL162751 GO:GO:0051301 GO:GO:0005856 GO:GO:0015031
            GO:GO:0007049 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0009524 UniGene:At.33291 HOGENOM:HOG000223224
            KO:K13525 ProtClustDB:CLSN2684913 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AK117125 EMBL:AK118571 EMBL:BT006485
            IPI:IPI00543476 RefSeq:NP_568114.1 ProteinModelPortal:Q9LZF6
            SMR:Q9LZF6 IntAct:Q9LZF6 STRING:Q9LZF6 PRIDE:Q9LZF6
            EnsemblPlants:AT5G03340.1 GeneID:831870 KEGG:ath:AT5G03340
            GeneFarm:1899 TAIR:At5g03340 InParanoid:Q9LZF6 OMA:AYRPIHK
            PhylomeDB:Q9LZF6 Genevestigator:Q9LZF6 GermOnline:AT5G03340
            Uniprot:Q9LZF6
        Length = 810

 Score = 465 (168.7 bits), Expect = 2.1e-43, P = 2.1e-43
 Identities = 94/210 (44%), Positives = 136/210 (64%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NVS+  +GGL +  REL+E+++ P+ +PE F + G+ P KGVL YGPPG GKTLLA+AIA
Sbjct:   476 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 535

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +   ANF+ V    ++  + GES   +RE+F  AR   PC++F DE+D+I  +R +    
Sbjct:   536 NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSAGD 595

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R L +LL ++DG +    V +I ATNRPD++D ALLRPGRLD+ I IPLP+E S
Sbjct:   596 AGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDS 655

Query:   208 RMEILK--IHAAGIAKHGEIDYEAVVKLAE 235
             R+ I K  +  + +AK  ++D  A+ K  +
Sbjct:   656 RLNIFKACLRKSPVAK--DVDVTALAKYTQ 683

 Score = 444 (161.4 bits), Expect = 4.1e-41, P = 4.1e-41
 Identities = 91/204 (44%), Positives = 134/204 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V Y  VGG+  Q+ ++RE +ELPL +P+LF  +G+KPPKG+LLYGPPG+GKTL+ARA+A+
Sbjct:   204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                A F  +    I+ K  GES   +R+ F  A  + P IIF+DEID+I  +R  E T+ 
Sbjct:   264 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTNG 321

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E +R + +LL  +DG      V ++ ATNRP+ +DPAL R GR DR+I+I +P+E  R
Sbjct:   322 EVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGR 380

Query:   209 MEILKIHAAGIAKHGEIDYEAVVK 232
             +E+L+IH   +    ++D E + K
Sbjct:   381 LEVLRIHTKNMKLAEDVDLERISK 404


>UNIPROTKB|H9KYT1 [details] [associations]
            symbol:LOC430766 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0017111 InterPro:IPR015415 Pfam:PF09336
            PANTHER:PTHR23077:SF18 GeneTree:ENSGT00700000104534
            EMBL:AADN02071262 Ensembl:ENSGALT00000000527 OMA:NRRTHAK
            Uniprot:H9KYT1
        Length = 538

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 94/207 (45%), Positives = 137/207 (66%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   206 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 265

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   266 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 325

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   326 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 381

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEA 229
             E+SR+ ILK  +  + +AK  ++D+ A
Sbjct:   382 EKSRVAILKANLRKSPVAKDVDLDFLA 408

 Score = 236 (88.1 bits), Expect = 4.7e-19, P = 4.7e-19
 Identities = 53/129 (41%), Positives = 79/129 (61%)

Query:   102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161
             I+ K  GES   +R+ F  A  + P IIF+DE+DAI  +R  E T  + E +R + +LL 
Sbjct:     6 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLT 62

Query:   162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK 221
              +DG  Q   V ++ ATNRP+ +DPAL R GR DR+++I +P+   R+EIL+IH   +  
Sbjct:    63 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL 122

Query:   222 HGEIDYEAV 230
               ++D E V
Sbjct:   123 ADDVDLEQV 131


>POMBASE|SPAC1565.08 [details] [associations]
            symbol:cdc48 "AAA family ATPase Cdc48" species:4896
            "Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005789
            "endoplasmic reticulum membrane" evidence=ISO] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=IGI] [GO:0006906 "vesicle fusion"
            evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISM]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISS] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IGI] [GO:0033554 "cellular response to
            stress" evidence=IGI] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase
            complex" evidence=ISO] [GO:0051230 "spindle disassembly"
            evidence=TAS] [GO:0061166 "establishment of endoplasmic reticulum
            localization involved in endoplasmic reticulum polarization at cell
            division site" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 PomBase:SPAC1565.08 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0033554 GO:GO:0016887 GO:GO:0000790 GO:GO:0030433
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0006906 GO:GO:0033047 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0061166
            OrthoDB:EOG47H8Z3 RefSeq:NP_593287.2 ProteinModelPortal:Q9P3A7
            SMR:Q9P3A7 IntAct:Q9P3A7 STRING:Q9P3A7 PRIDE:Q9P3A7
            EnsemblFungi:SPAC1565.08.1 GeneID:2542744 KEGG:spo:SPAC1565.08
            OMA:IVTIHPC NextBio:20803789 GO:GO:0034098 GO:GO:0030970
            GO:GO:0051230 Uniprot:Q9P3A7
        Length = 815

 Score = 463 (168.0 bits), Expect = 3.6e-43, P = 3.6e-43
 Identities = 93/206 (45%), Positives = 134/206 (65%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV +  +GGL +  RELRE++++P+M  E FLR G+ P KGVL +GPPGTGKTLLA+AIA
Sbjct:   493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIA 552

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG-GRRFSEGT 146
             +   ANF+ V    ++  + GES   +R++F  AR   PC++F+DE+D+I   R  S G 
Sbjct:   553 NECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGD 612

Query:   147 SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQ 206
             S   +  R + +LL ++DG +    V +I ATNRPD +DPAL+RPGRLD+ I +PLP+E+
Sbjct:   613 SGGGD--RVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEE 670

Query:   207 SRMEILKIHAAGIAKHGEIDYEAVVK 232
             +R  IL+          ++D  AV K
Sbjct:   671 ARFSILQTQLRHTPVAEDVDLRAVAK 696

 Score = 441 (160.3 bits), Expect = 8.9e-41, P = 8.9e-41
 Identities = 87/202 (43%), Positives = 131/202 (64%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V Y  +GG   Q+ ++RE +ELPL +P+LF  +GIKPP+G+L+YGPPGTGKTL+ARA+A+
Sbjct:   221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 280

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                A F  +    I+ K  GES   +R+ F  A  + P IIF+DEID+I  +R  E T+ 
Sbjct:   281 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKR--EKTNG 338

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E +R + +LL  +DG      V ++ ATNRP+ +DPAL R GR DR++++ +P+   R
Sbjct:   339 EVE-RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGR 397

Query:   209 MEILKIHAAGIAKHGEIDYEAV 230
             +EIL+IH   +    ++D E +
Sbjct:   398 LEILRIHTKNMKLADDVDLEQI 419


>ZFIN|ZDB-GENE-030131-5408 [details] [associations]
            symbol:vcp "valosin containing protein"
            species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006974 "response to DNA
            damage stimulus" evidence=IEA;ISS] [GO:0016567 "protein
            ubiquitination" evidence=ISS] [GO:0035861 "site of double-strand
            break" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:2000058 "regulation of protein ubiquitination involved in
            ubiquitin-dependent protein catabolic process" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0007049 "cell cycle" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359
            ZFIN:ZDB-GENE-030131-5408 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0006810 EMBL:CR318632 GO:GO:0016567 GO:GO:0007049
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK GeneTree:ENSGT00700000104534
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:AB093594 EMBL:AY576993 EMBL:BC050488 EMBL:BC067384
            IPI:IPI00505091 RefSeq:NP_958889.1 UniGene:Dr.75122
            ProteinModelPortal:Q7ZU99 SMR:Q7ZU99 STRING:Q7ZU99 PRIDE:Q7ZU99
            Ensembl:ENSDART00000023779 GeneID:327197 KEGG:dre:327197
            InParanoid:Q76KA4 NextBio:20809924 Bgee:Q7ZU99 Uniprot:Q7ZU99
        Length = 806

 Score = 461 (167.3 bits), Expect = 5.6e-43, P = 5.6e-43
 Identities = 94/208 (45%), Positives = 138/208 (66%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             N+++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA
Sbjct:   473 NITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFS 143
             +   ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG    
Sbjct:   533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGD 592

Query:   144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
              G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP
Sbjct:   593 GGGAADRVIN----QILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648

Query:   204 NEQSRMEILK--IHAAGIAKHGEIDYEA 229
             +E+SR+ ILK  +  + I+K  ++D+ A
Sbjct:   649 DEKSRIAILKANLRKSPISKDVDLDFLA 676

 Score = 449 (163.1 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 92/218 (42%), Positives = 136/218 (62%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG+  Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>UNIPROTKB|P23787 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8355 "Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0006974
            "response to DNA damage stimulus" evidence=ISS] [GO:0016567
            "protein ubiquitination" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=IDA] [GO:0018279 "protein N-linked glycosylation
            via asparagine" evidence=ISS] [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0030433 "ER-associated protein catabolic process"
            evidence=ISS] [GO:0032403 "protein complex binding" evidence=IPI]
            [GO:0034214 "protein hexamerization" evidence=IDA] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0035101 "FACT
            complex" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226 CTD:7415 EMBL:X54240
            EMBL:BC046949 PIR:S19738 RefSeq:NP_001095217.1 UniGene:Xl.8775
            ProteinModelPortal:P23787 SMR:P23787 PRIDE:P23787 GeneID:380491
            KEGG:xla:380491 Xenbase:XB-GENE-969578 Uniprot:P23787
        Length = 805

 Score = 460 (167.0 bits), Expect = 7.2e-43, P = 7.2e-43
 Identities = 95/207 (45%), Positives = 137/207 (66%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEA 229
             E+SRM ILK  +  + +AK  ++D+ A
Sbjct:   650 EKSRMAILKANLRKSPVAKDVDVDFLA 676

 Score = 449 (163.1 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQV 399


>TAIR|locus:2085064 [details] [associations]
            symbol:CDC48 "cell division cycle 48" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0042802 "identical protein binding" evidence=IPI] [GO:0022626
            "cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005635 "nuclear envelope"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005819
            "spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
            [GO:0009846 "pollen germination" evidence=IMP] [GO:0009860 "pollen
            tube growth" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006486 "protein
            glycosylation" evidence=RCA] [GO:0016310 "phosphorylation"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0005737 "cytoplasm" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005886 GO:GO:0009506
            GO:GO:0005524 GO:GO:0005794 GO:GO:0005618 GO:GO:0046686
            GO:GO:0005635 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC015985
            GO:GO:0005730 GO:GO:0051301 GO:GO:0005819 GO:GO:0048046
            GO:GO:0015031 GO:GO:0007049 GO:GO:0009860 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0022626 GO:GO:0009846 GO:GO:0009524 EMBL:U37587 EMBL:AY065076
            EMBL:AY094434 IPI:IPI00547533 PIR:S60112 RefSeq:NP_187595.1
            UniGene:At.21739 UniGene:At.33291 ProteinModelPortal:P54609
            SMR:P54609 IntAct:P54609 STRING:P54609 PaxDb:P54609 PRIDE:P54609
            ProMEX:P54609 EnsemblPlants:AT3G09840.1 GeneID:820142
            KEGG:ath:AT3G09840 GeneFarm:1893 TAIR:At3g09840
            HOGENOM:HOG000223224 InParanoid:P54609 KO:K13525 OMA:QIANECH
            PhylomeDB:P54609 ProtClustDB:CLSN2684913 Genevestigator:P54609
            GermOnline:AT3G09840 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            Uniprot:P54609
        Length = 809

 Score = 458 (166.3 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 95/211 (45%), Positives = 136/211 (64%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NVS++ +GGL +  REL+E+++ P+ +PE F + G+ P KGVL YGPPG GKTLLA+AIA
Sbjct:   476 NVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 535

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS-EGT 146
             +   ANF+ V    ++  + GES   +RE+F  AR   PC++F DE+D+I  +R    G 
Sbjct:   536 NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGG 595

Query:   147 SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQ 206
                    R L +LL ++DG +    V +I ATNRPD++D ALLRPGRLD+ I IPLP+E 
Sbjct:   596 DGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDED 655

Query:   207 SRMEILK--IHAAGIAKHGEIDYEAVVKLAE 235
             SR+ I K  +  + IAK  ++D  A+ K  +
Sbjct:   656 SRLNIFKAALRKSPIAK--DVDIGALAKYTQ 684

 Score = 445 (161.7 bits), Expect = 3.2e-41, P = 3.2e-41
 Identities = 91/205 (44%), Positives = 135/205 (65%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             +V Y  VGG+  Q+ ++RE +ELPL +P+LF  +G+KPPKG+LLYGPPG+GKTL+ARA+A
Sbjct:   203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 262

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +   A F  +    I+ K  GES   +R+ F  A  + P IIF+DEID+I  +R  E T+
Sbjct:   263 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTN 320

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
              + E +R + +LL  +DG      V ++ ATNRP+ +DPAL R GR DR+I+I +P+E  
Sbjct:   321 GEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIG 379

Query:   208 RMEILKIHAAGIAKHGEIDYEAVVK 232
             R+E+L+IH   +    ++D E + K
Sbjct:   380 RLEVLRIHTKNMKLAEDVDLERISK 404


>UNIPROTKB|E1BTS8 [details] [associations]
            symbol:LOC426240 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            GeneTree:ENSGT00700000104534 EMBL:AADN02060646 EMBL:AADN02060647
            EMBL:AADN02060648 EMBL:AADN02060649 EMBL:AADN02060650
            EMBL:AADN02060651 EMBL:AADN02060652 EMBL:AADN02060653
            IPI:IPI00823321 Ensembl:ENSGALT00000039430 ArrayExpress:E1BTS8
            Uniprot:E1BTS8
        Length = 804

 Score = 457 (165.9 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 94/207 (45%), Positives = 137/207 (66%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   472 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 531

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   532 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 591

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   592 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 647

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEA 229
             E+SR+ ILK  +  + +AK  ++D+ A
Sbjct:   648 EKSRVAILKANLRKSPVAKDVDLDFLA 674

 Score = 366 (133.9 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 83/219 (37%), Positives = 123/219 (56%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDH-QPCIIFM 131
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GE     R+    A    +   IF 
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGEGESACRKKISPAPPPLKTAGIFK 304

Query:   132 DEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRP 191
              + D       S  T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R 
Sbjct:   305 SD-DCFP----SPQTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 358

Query:   192 GRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             GR DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   359 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 397


>UNIPROTKB|Q6GL04 [details] [associations]
            symbol:vcp "Transitional endoplasmic reticulum ATPase"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000785
            "chromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0006302 "double-strand break repair"
            evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0019985
            "translesion synthesis" evidence=ISS] [GO:0030433 "ER-associated
            protein catabolic process" evidence=ISS] [GO:0032403 "protein
            complex binding" evidence=ISS] [GO:0034214 "protein hexamerization"
            evidence=ISS] [GO:0035861 "site of double-strand break"
            evidence=ISS] [GO:0035101 "FACT complex" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005737 GO:GO:0032403 GO:GO:0006810
            GO:GO:0000785 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0030433 GO:GO:0006302 HSSP:Q01853 eggNOG:COG0464
            GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034214
            GO:GO:0035861 GO:GO:0019985 CTD:7415 OrthoDB:EOG45TCMK
            EMBL:BC074716 RefSeq:NP_001005677.1 UniGene:Str.1287
            ProteinModelPortal:Q6GL04 SMR:Q6GL04 STRING:Q6GL04 PRIDE:Q6GL04
            GeneID:448177 KEGG:xtr:448177 Xenbase:XB-GENE-969573
            InParanoid:Q6GL04 Uniprot:Q6GL04
        Length = 805

 Score = 457 (165.9 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 94/207 (45%), Positives = 137/207 (66%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEA 229
             E+SR+ ILK  +  + +AK  ++D+ A
Sbjct:   650 EKSRIAILKANLRKSPVAKDVDLDFLA 676

 Score = 449 (163.1 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQV 399


>UNIPROTKB|G3X757 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0070842 "aggresome assembly"
            evidence=IEA] [GO:0045732 "positive regulation of protein catabolic
            process" evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 UniGene:Bt.49331 EMBL:DAAA02023126
            ProteinModelPortal:G3X757 Ensembl:ENSBTAT00000019970 Uniprot:G3X757
        Length = 806

 Score = 457 (165.9 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 95/211 (45%), Positives = 139/211 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK  ++D E + K+
Sbjct:   650 EKSRVAILKANLRKSPVAK--DVDLEFLAKM 678

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>UNIPROTKB|Q3ZBT1 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9913 "Bos taurus" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0006302 "double-strand break repair" evidence=ISS] [GO:0035861
            "site of double-strand break" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            EMBL:BC103125 IPI:IPI00710727 RefSeq:NP_001029466.1
            UniGene:Bt.49331 ProteinModelPortal:Q3ZBT1 SMR:Q3ZBT1 IntAct:Q3ZBT1
            STRING:Q3ZBT1 PRIDE:Q3ZBT1 GeneID:507345 KEGG:bta:507345 CTD:7415
            InParanoid:Q3ZBT1 OrthoDB:EOG45TCMK NextBio:20868019 Uniprot:Q3ZBT1
        Length = 806

 Score = 457 (165.9 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 95/211 (45%), Positives = 139/211 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK  ++D E + K+
Sbjct:   650 EKSRVAILKANLRKSPVAK--DVDLEFLAKM 678

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>UNIPROTKB|P55072 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9606 "Homo sapiens" [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0005102 "receptor binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IEA] [GO:0032403 "protein
            complex binding" evidence=IEA] [GO:0042802 "identical protein
            binding" evidence=IEA] [GO:0051260 "protein homooligomerization"
            evidence=IEA] [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0043231 "intracellular membrane-bounded organelle"
            evidence=ISS] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=ISS]
            [GO:0006281 "DNA repair" evidence=NAS] [GO:0006974 "response to DNA
            damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=IDA] [GO:0019904 "protein domain specific binding"
            evidence=IPI] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=NAS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IDA] [GO:0030433 "ER-associated
            protein catabolic process" evidence=IMP;TAS] [GO:0030968
            "endoplasmic reticulum unfolded protein response" evidence=TAS]
            [GO:0016887 "ATPase activity" evidence=TAS] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0016567 "protein
            ubiquitination" evidence=IDA;NAS] [GO:0042981 "regulation of
            apoptotic process" evidence=TAS] [GO:0045184 "establishment of
            protein localization" evidence=TAS] [GO:0019985 "translesion
            synthesis" evidence=IMP] [GO:0035861 "site of double-strand break"
            evidence=IDA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IMP] [GO:0032436 "positive regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0000502 "proteasome complex" evidence=IDA]
            [GO:0019903 "protein phosphatase binding" evidence=IPI] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IDA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0031334
            GO:GO:0051260 GO:GO:0016887 GO:GO:0016567 GO:GO:0008289
            GO:GO:0006919 EMBL:CH471071 GO:GO:0030433 GO:GO:0006302
            GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279 GO:GO:0031593
            GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 Orphanet:803 PDB:3TIW
            PDBsum:3TIW GO:GO:0030968 HOGENOM:HOG000223224 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 TCDB:3.A.16.1.1 GO:GO:0070842 GO:GO:0035861
            GO:GO:0019985 EMBL:AC004472 EMBL:AL353795 PDB:3QC8 PDB:3QQ8
            PDB:3QWZ PDBsum:3QC8 PDBsum:3QQ8 PDBsum:3QWZ HOVERGEN:HBG001226
            PDB:3EBB PDBsum:3EBB CTD:7415 OrthoDB:EOG45TCMK EMBL:AF100752
            EMBL:AK312310 EMBL:BC110913 EMBL:BC121794 EMBL:Z70768
            IPI:IPI00022774 PIR:T02243 RefSeq:NP_009057.1 UniGene:Hs.529782
            PDB:3HU1 PDB:3HU2 PDB:3HU3 PDB:3QQ7 PDBsum:3HU1 PDBsum:3HU2
            PDBsum:3HU3 PDBsum:3QQ7 ProteinModelPortal:P55072 SMR:P55072
            DIP:DIP-33543N IntAct:P55072 MINT:MINT-272884 STRING:P55072
            PhosphoSite:P55072 DMDM:6094447 DOSAC-COBS-2DPAGE:P55072 OGP:P55072
            REPRODUCTION-2DPAGE:IPI00022774 REPRODUCTION-2DPAGE:P55072
            PaxDb:P55072 PRIDE:P55072 Ensembl:ENST00000358901 GeneID:7415
            KEGG:hsa:7415 UCSC:uc003zvy.2 GeneCards:GC09M035056 HGNC:HGNC:12666
            HPA:CAB005593 HPA:HPA012728 HPA:HPA012814 MIM:167320 MIM:601023
            MIM:613954 neXtProt:NX_P55072 Orphanet:52430 PharmGKB:PA37289
            InParanoid:P55072 BindingDB:P55072 ChEMBL:CHEMBL1075145 ChiTaRS:VCP
            EvolutionaryTrace:P55072 GenomeRNAi:7415 NextBio:29034
            ArrayExpress:P55072 Bgee:P55072 CleanEx:HS_VCP
            Genevestigator:P55072 GermOnline:ENSG00000165280 Uniprot:P55072
        Length = 806

 Score = 457 (165.9 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 95/211 (45%), Positives = 139/211 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK  ++D E + K+
Sbjct:   650 EKSRVAILKANLRKSPVAK--DVDLEFLAKM 678

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>MGI|MGI:99919 [details] [associations]
            symbol:Vcp "valosin containing protein" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=ISO] [GO:0005102
            "receptor binding" evidence=ISO] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005829
            "cytosol" evidence=ISO] [GO:0006200 "ATP catabolic process"
            evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006302
            "double-strand break repair" evidence=ISO] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IGI]
            [GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=ISO] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IDA] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO] [GO:0008289 "lipid binding" evidence=IEA]
            [GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase activity"
            evidence=ISO] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=ISO] [GO:0019903 "protein phosphatase binding"
            evidence=ISO] [GO:0019904 "protein domain specific binding"
            evidence=ISO] [GO:0019985 "translesion synthesis" evidence=ISO]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=ISO] [GO:0031334 "positive regulation of protein complex
            assembly" evidence=ISO] [GO:0031593 "polyubiquitin binding"
            evidence=ISO;IDA] [GO:0032403 "protein complex binding"
            evidence=ISO] [GO:0032436 "positive regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0035861 "site of double-strand break" evidence=ISO] [GO:0042802
            "identical protein binding" evidence=ISO] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=ISO]
            [GO:0043234 "protein complex" evidence=IPI] [GO:0043531 "ADP
            binding" evidence=ISO] [GO:0045732 "positive regulation of protein
            catabolic process" evidence=ISO] [GO:0051260 "protein
            homooligomerization" evidence=ISO] [GO:0070842 "aggresome assembly"
            evidence=IGI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 MGI:MGI:99919 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0043234 GO:GO:0031334 GO:GO:0051260 GO:GO:0016887
            GO:GO:0016567 GO:GO:0008289 GO:GO:0006919 GO:GO:0030433
            GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464 GO:GO:0018279
            GO:GO:0031593 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            GO:GO:0030970 GeneTree:ENSGT00700000104534 EMBL:AL672276
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 PDB:2PJH PDBsum:2PJH
            PDB:1S3S PDBsum:1S3S HOVERGEN:HBG001226 CTD:7415 OrthoDB:EOG45TCMK
            ChiTaRS:VCP EMBL:Z14044 EMBL:AK028264 EMBL:AK030751 EMBL:AK149931
            EMBL:AK151109 EMBL:AK151418 EMBL:AK153249 EMBL:AK159177
            EMBL:AK159509 EMBL:AK167794 EMBL:AK169140 EMBL:BC043053
            EMBL:BC049114 IPI:IPI00622235 PIR:S25197 RefSeq:NP_033529.3
            UniGene:Mm.245976 PDB:1E32 PDB:1R7R PDB:3CF0 PDB:3CF1 PDB:3CF2
            PDB:3CF3 PDBsum:1E32 PDBsum:1R7R PDBsum:3CF0 PDBsum:3CF1
            PDBsum:3CF2 PDBsum:3CF3 DisProt:DP00435 ProteinModelPortal:Q01853
            SMR:Q01853 DIP:DIP-29796N IntAct:Q01853 MINT:MINT-220770
            STRING:Q01853 PhosphoSite:Q01853 REPRODUCTION-2DPAGE:Q01853
            UCD-2DPAGE:Q01853 PaxDb:Q01853 PRIDE:Q01853
            Ensembl:ENSMUST00000030164 GeneID:269523 KEGG:mmu:269523
            UCSC:uc008sor.2 InParanoid:Q01853 BindingDB:Q01853
            EvolutionaryTrace:Q01853 NextBio:392876 Bgee:Q01853 CleanEx:MM_VCP
            Genevestigator:Q01853 GermOnline:ENSMUSG00000028452 Uniprot:Q01853
        Length = 806

 Score = 457 (165.9 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 95/211 (45%), Positives = 139/211 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK  ++D E + K+
Sbjct:   650 EKSRVAILKANLRKSPVAK--DVDLEFLAKM 678

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>RGD|621595 [details] [associations]
            symbol:Vcp "valosin-containing protein" species:10116 "Rattus
            norvegicus" [GO:0000502 "proteasome complex" evidence=IEA;ISO]
            [GO:0005102 "receptor binding" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA;IMP]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA]
            [GO:0005829 "cytosol" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
            process" evidence=IDA] [GO:0006302 "double-strand break repair"
            evidence=ISO;ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISO] [GO:0006888 "ER to Golgi
            vesicle-mediated transport" evidence=IMP] [GO:0006919 "activation
            of cysteine-type endopeptidase activity involved in apoptotic
            process" evidence=IEA;ISO] [GO:0006974 "response to DNA damage
            stimulus" evidence=ISO;ISS] [GO:0008289 "lipid binding"
            evidence=IEA] [GO:0016567 "protein ubiquitination"
            evidence=ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0018279 "protein N-linked glycosylation via asparagine"
            evidence=ISO;ISS] [GO:0019903 "protein phosphatase binding"
            evidence=IEA;ISO] [GO:0019904 "protein domain specific binding"
            evidence=IEA;ISO] [GO:0019985 "translesion synthesis"
            evidence=ISO;ISS] [GO:0030433 "ER-associated protein catabolic
            process" evidence=ISO;ISS] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IEA;ISO] [GO:0031334 "positive
            regulation of protein complex assembly" evidence=IEA;ISO]
            [GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032403
            "protein complex binding" evidence=IPI] [GO:0032436 "positive
            regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISO;IMP] [GO:0035861 "site of double-strand
            break" evidence=ISO;ISS] [GO:0042802 "identical protein binding"
            evidence=IDA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IDA] [GO:0043234 "protein complex"
            evidence=ISO] [GO:0043531 "ADP binding" evidence=IMP] [GO:0045732
            "positive regulation of protein catabolic process" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=IDA] [GO:0070842
            "aggresome assembly" evidence=IEA;ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 RGD:621595 Pfam:PF02359
            GO:GO:0005783 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
            GO:GO:0031334 GO:GO:0051260 GO:GO:0005102 GO:GO:0016887
            GO:GO:0016567 GO:GO:0042802 GO:GO:0008289 GO:GO:0006919
            GO:GO:0030433 GO:GO:0006302 GO:GO:0000502 eggNOG:COG0464
            GO:GO:0018279 GO:GO:0006888 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:U11760 EMBL:BC060518
            IPI:IPI00212014 PIR:A55190 RefSeq:NP_446316.1 UniGene:Rn.98891
            ProteinModelPortal:P46462 SMR:P46462 IntAct:P46462
            MINT:MINT-1954391 STRING:P46462 PhosphoSite:P46462
            World-2DPAGE:0004:P46462 PRIDE:P46462 Ensembl:ENSRNOT00000046102
            GeneID:116643 KEGG:rno:116643 UCSC:RGD:621595 InParanoid:P46462
            NextBio:619375 Genevestigator:P46462 GermOnline:ENSRNOG00000034242
            Uniprot:P46462
        Length = 806

 Score = 457 (165.9 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 95/211 (45%), Positives = 139/211 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK  ++D E + K+
Sbjct:   650 EKSRVAILKANLRKSPVAK--DVDLEFLAKM 678

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>UNIPROTKB|F1P4V8 [details] [associations]
            symbol:LOC426240 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:DIRRYEE GeneTree:ENSGT00700000104534
            EMBL:AADN02060646 EMBL:AADN02060647 EMBL:AADN02060648
            EMBL:AADN02060649 EMBL:AADN02060650 EMBL:AADN02060651
            EMBL:AADN02060652 EMBL:AADN02060653 IPI:IPI00585183
            Ensembl:ENSGALT00000003093 ArrayExpress:F1P4V8 Uniprot:F1P4V8
        Length = 810

 Score = 457 (165.9 bits), Expect = 1.6e-42, P = 1.6e-42
 Identities = 94/207 (45%), Positives = 137/207 (66%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   478 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 537

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   538 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 597

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   598 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 653

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEA 229
             E+SR+ ILK  +  + +AK  ++D+ A
Sbjct:   654 EKSRVAILKANLRKSPVAKDVDLDFLA 680

 Score = 437 (158.9 bits), Expect = 2.4e-40, P = 2.4e-40
 Identities = 88/219 (40%), Positives = 131/219 (59%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F     + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEETEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLM-ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRP 191
             E+DAI             E++R ++ +LL  +DG  Q   V ++ ATNRP+ +DPAL R 
Sbjct:   305 ELDAIASDDCFPSPQTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 364

Query:   192 GRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             GR DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   365 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 403


>UNIPROTKB|E2RLQ9 [details] [associations]
            symbol:VCP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0070842 "aggresome assembly" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IEA] [GO:0035861 "site of double-strand break"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0031334 "positive regulation of protein complex assembly"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0019904 "protein domain specific
            binding" evidence=IEA] [GO:0019903 "protein phosphatase binding"
            evidence=IEA] [GO:0018279 "protein N-linked glycosylation via
            asparagine" evidence=IEA] [GO:0006919 "activation of cysteine-type
            endopeptidase activity involved in apoptotic process" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006302 "double-strand break repair"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005634
            GO:GO:0005737 GO:GO:0031334 GO:GO:0006919 GO:GO:0006302
            GO:GO:0000502 GO:GO:0006511 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0045732 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            OMA:AYRPIHK GO:GO:0030970 GeneTree:ENSGT00700000104534
            GO:GO:0070842 EMBL:AAEX03007949 Ensembl:ENSCAFT00000003151
            NextBio:20856352 Uniprot:E2RLQ9
        Length = 822

 Score = 457 (165.9 bits), Expect = 1.7e-42, P = 1.7e-42
 Identities = 95/211 (45%), Positives = 139/211 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   490 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 549

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   550 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 609

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   610 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 665

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK  ++D E + K+
Sbjct:   666 EKSRVAILKANLRKSPVAK--DVDLEFLAKM 694

 Score = 447 (162.4 bits), Expect = 2.0e-41, P = 2.0e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   201 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 260

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   261 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 320

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   321 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 377

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   378 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 415


>UNIPROTKB|P03974 [details] [associations]
            symbol:VCP "Transitional endoplasmic reticulum ATPase"
            species:9823 "Sus scrofa" [GO:0019985 "translesion synthesis"
            evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
            [GO:0006974 "response to DNA damage stimulus" evidence=ISS]
            [GO:0035861 "site of double-strand break" evidence=ISS] [GO:0006302
            "double-strand break repair" evidence=ISS] [GO:0018279 "protein
            N-linked glycosylation via asparagine" evidence=ISS] [GO:0030433
            "ER-associated protein catabolic process" evidence=ISS] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008289
            "lipid binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005783 GO:GO:0005829
            GO:GO:0005524 GO:GO:0005634 GO:GO:0006810 GO:GO:0016567
            GO:GO:0008289 GO:GO:0030433 GO:GO:0006302 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0018279 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0035861 GO:GO:0019985 HOVERGEN:HBG001226
            CTD:7415 OrthoDB:EOG45TCMK EMBL:M30143 PIR:A26360
            RefSeq:NP_999445.1 UniGene:Ssc.856 ProteinModelPortal:P03974
            SMR:P03974 STRING:P03974 GeneID:397524 KEGG:ssc:397524
            Uniprot:P03974
        Length = 806

 Score = 454 (164.9 bits), Expect = 3.3e-42, P = 3.3e-42
 Identities = 94/211 (44%), Positives = 139/211 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  +GGL D  REL++ ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+
Sbjct:   474 VTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSE 144
                ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I    GG     
Sbjct:   534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             G +ADR I     ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+
Sbjct:   594 GGAADRVIN----QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649

Query:   205 EQSRMEILK--IHAAGIAKHGEIDYEAVVKL 233
             E+SR+ ILK  +  + +AK  ++D E + K+
Sbjct:   650 EKSRVAILKANLRKSPVAK--DVDLEFLAKM 678

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 92/218 (42%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +DPAL R G
Sbjct:   305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E V
Sbjct:   362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399


>CGD|CAL0002187 [details] [associations]
            symbol:orf19.6432 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0030687 "preribosome, large subunit
            precursor" evidence=IEA] [GO:0042493 "response to drug"
            evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            CGD:CAL0002187 GO:GO:0005524 EMBL:AACQ01000073 EMBL:AACQ01000072
            eggNOG:COG0464 KO:K14575 GO:GO:0017111 InterPro:IPR009010
            SUPFAM:SSF50692 SMART:SM01073 RefSeq:XP_716187.1 RefSeq:XP_716270.1
            ProteinModelPortal:Q5A331 GeneID:3642106 GeneID:3642160
            KEGG:cal:CaO19.13790 KEGG:cal:CaO19.6432 Uniprot:Q5A331
        Length = 766

 Score = 453 (164.5 bits), Expect = 3.3e-42, P = 3.3e-42
 Identities = 96/211 (45%), Positives = 140/211 (66%)

Query:    26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85
             P  ++Y  VGGLS QI  L+ +IELPL NP LF   GI PP+G+LL+GPPGTGKT+L R 
Sbjct:   223 PQQITYDQVGGLSKQIELLKSTIELPLNNPTLFSDFGISPPRGILLHGPPGTGKTMLLRC 282

Query:    86 IASNI-DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE 144
             +A++I +A+ L +   +I+ KY+GE+   IR++F  A+  QP IIFMDEID+I   R S+
Sbjct:   283 VANSITEAHVLTINGPSIVSKYLGETENAIRDIFNEAKKFQPSIIFMDEIDSIAPSRTSD 342

Query:   145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
               S + E  R + +LL  +DG    G++ +I ATNRP+ +D AL RPGR D+++EI +P+
Sbjct:   343 D-SGETE-SRVVAQLLTVMDGMGDNGRIVVIGATNRPNSIDSALRRPGRFDQEVEIGIPD 400

Query:   205 EQSRMEIL-KIHAAGIAKHGEIDYEAVVKLA 234
              ++R EIL K  A   ++  +I  E +  +A
Sbjct:   401 VEAREEILTKQFAKMNSEKCQITKEEIASIA 431

 Score = 436 (158.5 bits), Expect = 2.4e-40, P = 2.4e-40
 Identities = 95/213 (44%), Positives = 131/213 (61%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             +T   +  ALP E+ P     +  +   V +S +GG  +  R+L E ++LPL   + F  
Sbjct:   469 VTVDDVYHALP-EIRPSAMREIFLEMPKVHWSDIGGQEELKRKLIEVVQLPLEASDSFKN 527

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             +G+  PKGVLLYGPPG  KTL A+A+A+    NFL V    I +KY+GES R IRE+F  
Sbjct:   528 LGVSSPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERAIREIFRK 587

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             AR   P IIF DEIDAI G R  +G S+       L  LLN++DG ++L  V ++ ATN+
Sbjct:   588 ARAASPSIIFFDEIDAIAGDR--DGDSSTTAASNVLTSLLNEIDGVEELKGVVIVGATNK 645

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK 213
             P  +DPALLRPGRLDR I +  P+  +R++IL+
Sbjct:   646 PTEIDPALLRPGRLDRHIYVAPPDYDARLQILQ 678


>SGD|S000004389 [details] [associations]
            symbol:AFG2 "ATPase of the CDC48/PAS1/SEC18 (AAA) family,
            forms a hexameric complex" species:4932 "Saccharomyces cerevisiae"
            [GO:0030687 "preribosome, large subunit precursor"
            evidence=IDA;IMP] [GO:0042493 "response to drug" evidence=IMP]
            [GO:0005622 "intracellular" evidence=IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0042273 "ribosomal
            large subunit biogenesis" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 SGD:S000004389 GO:GO:0005524 GO:GO:0042493
            EMBL:BK006945 GO:GO:0016887 eggNOG:COG0464 HOGENOM:HOG000223225
            KO:K14575 OrthoDB:EOG49CTH0 GO:GO:0042273 EMBL:L14615 EMBL:U19729
            EMBL:AY693116 PIR:S39110 RefSeq:NP_013501.1
            ProteinModelPortal:P32794 SMR:P32794 DIP:DIP-4470N IntAct:P32794
            MINT:MINT-566202 STRING:P32794 PaxDb:P32794 PeptideAtlas:P32794
            EnsemblFungi:YLR397C GeneID:851113 KEGG:sce:YLR397C CYGD:YLR397c
            GeneTree:ENSGT00700000104502 OMA:MLLRCVA NextBio:967827
            Genevestigator:P32794 GermOnline:YLR397C GO:GO:0030687
            Uniprot:P32794
        Length = 780

 Score = 452 (164.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 92/216 (42%), Positives = 140/216 (64%)

Query:    20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 79
             N  +  P  +SY+AVGGL  +I  L+ +IE+PL  P LF   G+ PP+G+LL+GPPGTGK
Sbjct:   233 NRKYNLPEPLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGK 292

Query:    80 TLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139
             T+L R +A+  +A+ L +   +I+ KY+GE+   +R++F  AR +QP IIF+DEID+I  
Sbjct:   293 TMLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAP 352

Query:   140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE 199
              R ++  S + E  R +  LL  +DG    GKV +I ATNRP+ +DPAL RPGR D+++E
Sbjct:   353 NRANDD-SGEVE-SRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVE 410

Query:   200 IPLPNEQSRMEILKIHAAGIAKHGEI-DYEAVVKLA 234
             I +P+  +R +IL    + ++    + D EA+  +A
Sbjct:   411 IGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIA 446

 Score = 436 (158.5 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 96/211 (45%), Positives = 129/211 (61%)

Query:     3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
             TL  + +   ++ P     +  +   V +S +GG  +   +++E I+LPL   E F R+G
Sbjct:   487 TLKDVESAMVDIRPSAMREIFLEMPKVYWSDIGGQEELKTKMKEMIQLPLEASETFARLG 546

Query:    63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
             I  PKGVLLYGPPG  KTL A+A+A+    NFL V    I +KY+GES R IRE+F  AR
Sbjct:   547 ISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKGPEIFNKYVGESERAIREIFRKAR 606

Query:   123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
                P IIF DEIDA+   R    TSA   +   L  LLN++DG ++L  V ++ ATNRPD
Sbjct:   607 SAAPSIIFFDEIDALSPDRDGSSTSAANHV---LTSLLNEIDGVEELKGVVIVAATNRPD 663

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILK 213
              +D ALLRPGRLDR I +  P+  +R+EILK
Sbjct:   664 EIDAALLRPGRLDRHIYVGPPDVNARLEILK 694


>CGD|CAL0000732 [details] [associations]
            symbol:CDC48 species:5476 "Candida albicans" [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0043332 "mating projection tip"
            evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
            [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
            AAA ATPase complex" evidence=IEA] [GO:0000837 "Doa10p ubiquitin
            ligase complex" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0030970 "retrograde protein transport, ER to
            cytosol" evidence=IEA] [GO:0031134 "sister chromatid biorientation"
            evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:1900182 "positive regulation of protein
            localization to nucleus" evidence=IEA] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IEA] [GO:0071630
            "nucleus-associated proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0051228 "mitotic spindle
            disassembly" evidence=IEA] [GO:0016320 "endoplasmic reticulum
            membrane fusion" evidence=IEA] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IEA] [GO:0072671
            "mitochondria-associated protein catabolic process" evidence=IEA]
            [GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
            endoplasmic reticulum localization involved in endoplasmic
            reticulum polarization at cell division site" evidence=IEA]
            [GO:0016236 "macroautophagy" evidence=IEA] [GO:0009986 "cell
            surface" evidence=IDA] [GO:0043130 "ubiquitin binding"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 451 (163.8 bits), Expect = 7.7e-42, P = 7.7e-42
 Identities = 89/202 (44%), Positives = 133/202 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V Y  +GG   Q+ ++RE +ELPL +P+LF  +GIKPPKG+L+YGPPGTGKT++ARA+A+
Sbjct:   212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVAN 271

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                A F  +    I+ K  GES   +R+ F  A  + P IIF+DEID+I  +R  + T+ 
Sbjct:   272 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKR--DKTNG 329

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E +R + +LL  +DG      V +I ATNRP+ +DPAL R GR DR+++I +P+ + R
Sbjct:   330 EVE-RRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGR 388

Query:   209 MEILKIHAAGIAKHGEIDYEAV 230
             +EIL+IH   +    ++D EA+
Sbjct:   389 LEILRIHTKNMKLADDVDLEAI 410

 Score = 437 (158.9 bits), Expect = 2.5e-40, P = 2.5e-40
 Identities = 84/206 (40%), Positives = 130/206 (63%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV++  +GGL +   EL+E++E P+++P+ + + G+ P KGVL +GPPGTGKTLLA+A+A
Sbjct:   484 NVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKAVA 543

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             + + ANF+ V    ++  + GES   IR++F  AR   P ++F+DE+D+I   R      
Sbjct:   544 TEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSHGD 603

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + +LL ++DG +    V +I ATNRPD +DPALLRPGRLD+ I +PLP+E +
Sbjct:   604 AGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPA 663

Query:   208 RMEILKIHAAGIAKHGEIDYEAVVKL 233
             R+ IL+           +D   + K+
Sbjct:   664 RLSILQAQLRNTPLEPGLDLNEIAKI 689


>UNIPROTKB|Q59WG3 [details] [associations]
            symbol:CDC48 "Putative uncharacterized protein CDC48"
            species:237561 "Candida albicans SC5314" [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0009986 "cell surface" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 CGD:CAL0000732 Pfam:PF02359 GO:GO:0005886
            GO:GO:0005524 GO:GO:0009986 eggNOG:COG0464 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 EMBL:AACQ01000114 EMBL:AACQ01000113
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 RefSeq:XP_713945.1 RefSeq:XP_714003.1
            ProteinModelPortal:Q59WG3 SMR:Q59WG3 STRING:Q59WG3 GeneID:3644394
            GeneID:3644440 KEGG:cal:CaO19.2340 KEGG:cal:CaO19.9876
            Uniprot:Q59WG3
        Length = 826

 Score = 451 (163.8 bits), Expect = 7.7e-42, P = 7.7e-42
 Identities = 89/202 (44%), Positives = 133/202 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V Y  +GG   Q+ ++RE +ELPL +P+LF  +GIKPPKG+L+YGPPGTGKT++ARA+A+
Sbjct:   212 VGYDDIGGCKKQMAQIRELVELPLRHPQLFKSIGIKPPKGILMYGPPGTGKTIMARAVAN 271

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                A F  +    I+ K  GES   +R+ F  A  + P IIF+DEID+I  +R  + T+ 
Sbjct:   272 ETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPSIIFIDEIDSIAPKR--DKTNG 329

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E +R + +LL  +DG      V +I ATNRP+ +DPAL R GR DR+++I +P+ + R
Sbjct:   330 EVE-RRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFGRFDREVDIGVPDAEGR 388

Query:   209 MEILKIHAAGIAKHGEIDYEAV 230
             +EIL+IH   +    ++D EA+
Sbjct:   389 LEILRIHTKNMKLADDVDLEAI 410

 Score = 437 (158.9 bits), Expect = 2.5e-40, P = 2.5e-40
 Identities = 84/206 (40%), Positives = 130/206 (63%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV++  +GGL +   EL+E++E P+++P+ + + G+ P KGVL +GPPGTGKTLLA+A+A
Sbjct:   484 NVTWDDIGGLDNIKNELKETVEYPVLHPDQYQKFGLAPTKGVLFFGPPGTGKTLLAKAVA 543

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             + + ANF+ V    ++  + GES   IR++F  AR   P ++F+DE+D+I   R      
Sbjct:   544 TEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSHGD 603

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + +LL ++DG +    V +I ATNRPD +DPALLRPGRLD+ I +PLP+E +
Sbjct:   604 AGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPALLRPGRLDQLIYVPLPDEPA 663

Query:   208 RMEILKIHAAGIAKHGEIDYEAVVKL 233
             R+ IL+           +D   + K+
Sbjct:   664 RLSILQAQLRNTPLEPGLDLNEIAKI 689


>FB|FBgn0261014 [details] [associations]
            symbol:TER94 "TER94" species:7227 "Drosophila melanogaster"
            [GO:0045169 "fusome" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0016887 "ATPase activity" evidence=NAS]
            [GO:0005783 "endoplasmic reticulum" evidence=NAS] [GO:0007030
            "Golgi organization" evidence=IMP] [GO:0007317 "regulation of pole
            plasm oskar mRNA localization" evidence=IMP] [GO:0016320
            "endoplasmic reticulum membrane fusion" evidence=ISS] [GO:0000226
            "microtubule cytoskeleton organization" evidence=IMP] [GO:0007029
            "endoplasmic reticulum organization" evidence=IMP] [GO:0045451
            "pole plasm oskar mRNA localization" evidence=IMP] [GO:0008103
            "oocyte microtubule cytoskeleton polarization" evidence=IMP]
            [GO:0008104 "protein localization" evidence=IMP] [GO:0042052
            "rhabdomere development" evidence=IMP] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0032436 "positive regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0000502 "proteasome complex" evidence=NAS]
            [GO:0006508 "proteolysis" evidence=IMP] [GO:0005811 "lipid
            particle" evidence=IDA] [GO:0005875 "microtubule associated
            complex" evidence=IDA] [GO:0030433 "ER-associated protein catabolic
            process" evidence=IMP] [GO:0006200 "ATP catabolic process"
            evidence=IGI] [GO:0048813 "dendrite morphogenesis" evidence=IMP]
            [GO:0043523 "regulation of neuron apoptotic process" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IMP]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 EMBL:AE013599 GO:GO:0007275
            GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0000226
            GO:GO:0030154 GO:GO:0005811 GO:GO:0006810 GO:GO:0006200
            GO:GO:0048477 GO:GO:0030433 GO:GO:0000502 eggNOG:COG0464
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0032436 InterPro:IPR015415 Pfam:PF09336 GO:GO:0007030
            GO:GO:0007029 GO:GO:0016320 GO:GO:0045169 KO:K13525
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            GeneTree:ENSGT00700000104534 GO:GO:0007317 EMBL:AF047037
            EMBL:AF202034 EMBL:AF132553 RefSeq:NP_001097249.1
            RefSeq:NP_001097250.1 RefSeq:NP_477369.1 UniGene:Dm.2968
            ProteinModelPortal:Q7KN62 SMR:Q7KN62 IntAct:Q7KN62 STRING:Q7KN62
            PaxDb:Q7KN62 PRIDE:Q7KN62 EnsemblMetazoa:FBtr0088391 GeneID:36040
            KEGG:dme:Dmel_CG2331 UCSC:CG2331-RA CTD:36040 FlyBase:FBgn0261014
            InParanoid:Q7KN62 OMA:RRGTDVN OrthoDB:EOG4TX96S GenomeRNAi:36040
            NextBio:796507 Bgee:Q7KN62 Uniprot:Q7KN62
        Length = 801

 Score = 450 (163.5 bits), Expect = 8.7e-42, P = 8.7e-42
 Identities = 89/216 (41%), Positives = 135/216 (62%)

Query:    15 DPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGP 74
             DP+      E    V Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+L+YGP
Sbjct:   184 DPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGP 243

Query:    75 PGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEI 134
             PGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+DEI
Sbjct:   244 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEI 303

Query:   135 DAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRL 194
             DAI  +R  + T  + E +R + +LL  +DG  +   + ++ ATNRP+ +DPAL R GR 
Sbjct:   304 DAIAPKR--DKTHGEVE-RRIVSQLLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRF 360

Query:   195 DRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             DR+I+I +P+   R+E+L+IH   +  H ++D E +
Sbjct:   361 DREIDIGIPDATGRLEVLRIHTKNMKLHDDVDLEQI 396

 Score = 442 (160.7 bits), Expect = 6.5e-41, P = 6.5e-41
 Identities = 87/206 (42%), Positives = 133/206 (64%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             N +++ +GGL    +EL+E ++ P+ +P+ FL+ G++P +GVL YGPPG GKTLLA+AIA
Sbjct:   470 NTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 529

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +   ANF+ V    ++  + GES   +R++F  AR   PC++F DE+D+I   R      
Sbjct:   530 NECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGD 589

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+++S
Sbjct:   590 AGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKS 649

Query:   208 RMEILK--IHAAGIAKHGEIDYEAVV 231
             R  ILK  +  + +AK  ++ Y A V
Sbjct:   650 REAILKANLRKSPLAKEVDLTYIAKV 675


>UNIPROTKB|G4N517 [details] [associations]
            symbol:MGG_05193 "Cell division control protein 48"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0051301 EMBL:CM001233 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0043581 KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18
            Pfam:PF02933 SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            RefSeq:XP_003712735.1 ProteinModelPortal:G4N517 SMR:G4N517
            EnsemblFungi:MGG_05193T0 GeneID:2675720 KEGG:mgr:MGG_05193
            Uniprot:G4N517
        Length = 820

 Score = 450 (163.5 bits), Expect = 9.6e-42, P = 9.6e-42
 Identities = 92/218 (42%), Positives = 137/218 (62%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+  +    +   V Y  +GG   Q+ ++RE +ELPL +P+LF  +GIKPP+GVLLY
Sbjct:   203 EGEPIQRDEEENNLNEVGYDDIGGCRKQMAQIREMVELPLRHPQLFKSIGIKPPRGVLLY 262

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   263 GPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFID 322

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EID+I  +R  E T+ + E +R + +LL  +DG      V ++ ATNRP+ +DPAL R G
Sbjct:   323 EIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFG 379

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL+IH   +    ++D E +
Sbjct:   380 RFDREVDIGIPDPTGRLEILQIHTKNMKLGDDVDLEQI 417

 Score = 435 (158.2 bits), Expect = 4.1e-40, P = 4.1e-40
 Identities = 86/203 (42%), Positives = 125/203 (61%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV +  +GGL +  ++LRE ++ P+ +PE FL+ G+ P +GVL YGPPGTGKT+LA+A+A
Sbjct:   492 NVRWEDIGGLDEVKQDLREQVQYPVDHPEKFLKFGLSPSRGVLFYGPPGTGKTMLAKAVA 551

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +   ANF+ V    ++  + GES   IR++F  AR   PCI+F+DE+D+I   R      
Sbjct:   552 NECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCIVFLDELDSIAKARGGSVGD 611

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + +LL ++DG      V +I ATNRP+ LDPAL RPGRLD  I +PLP+E  
Sbjct:   612 AGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCRPGRLDSLIYVPLPDELG 671

Query:   208 RMEILKIHAAGIAKHGEIDYEAV 230
             R+ ILK          ++D + +
Sbjct:   672 RLSILKAQLRKTPVSDDVDLQYI 694


>DICTYBASE|DDB_G0282181 [details] [associations]
            symbol:nvl "valosin-containing protein" species:44689
            "Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;ISS] [GO:0000055 "ribosomal large subunit
            export from nucleus" evidence=ISS] [GO:0042254 "ribosome
            biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
            dictyBase:DDB_G0282181 GO:GO:0005524 GO:GO:0005730
            GenomeReviews:CM000152_GR EMBL:AAFI02000045 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 GO:GO:0000055 KO:K14571
            RefSeq:XP_640327.1 ProteinModelPortal:Q54SY2
            EnsemblProtists:DDB0237516 GeneID:8623428 KEGG:ddi:DDB_G0282181
            InParanoid:Q54SY2 OMA:KQIQYYK ProtClustDB:CLSZ2846768
            Uniprot:Q54SY2
        Length = 867

 Score = 449 (163.1 bits), Expect = 1.5e-41, P = 1.5e-41
 Identities = 87/199 (43%), Positives = 127/199 (63%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV++  VG LS    EL  SI  P+  P+ +  +GI  P GVL+YGPPG GKTLLA+AIA
Sbjct:   562 NVTWDDVGALSGVREELTNSILRPIRYPKKYKNMGIDSPAGVLMYGPPGCGKTLLAKAIA 621

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             S   ANF+ V    +++KY+GES R +R++F  A    PC+IF DE DA+  +R      
Sbjct:   622 SECQANFISVKGPELLNKYVGESERAVRQVFQRAAASSPCVIFFDEFDALAPKRGGGDGG 681

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
              ++  +R + +LL ++DG ++  +V +I ATNRPD++D A+ RPGRLD+ + +PLP+ + 
Sbjct:   682 GNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEE 741

Query:   208 RMEILKIHAAGIAKHGEID 226
             R EILK     I  H ++D
Sbjct:   742 RCEILKTLTHKIPIHQDVD 760

 Score = 288 (106.4 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
 Identities = 60/154 (38%), Positives = 94/154 (61%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             +++S +GG+   +R++RE IE P+ +PE++  +G++PP+G+LL+GP G GKTLLA+AIA 
Sbjct:   213 INFSNLGGVESCLRDIREHIEYPICHPEIYSHLGVEPPRGILLHGPSGCGKTLLAKAIAG 272

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
              +      + ++ I     GES   +R +F  A    PCIIF+DEIDAI  +R  E  S 
Sbjct:   273 ELKVPLFAISATEITSGVSGESEARVRTLFSNAIAQAPCIIFIDEIDAIAPKR--ESASK 330

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
             D E +R + +LL  +D  + L       +TN P+
Sbjct:   331 DME-RRIVSQLLTCMDSLNYLSSNN---STNEPN 360

 Score = 115 (45.5 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query:   170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA 229
             G V +I ATNRP+ LD AL   GR D++I + +P++ +R +ILK+  + +      DYE 
Sbjct:   401 GHVIVIGATNRPESLDTALRIGGRFDKEICLGIPDQTARCKILKVITSKMRLENNFDYEE 460

Query:   230 VVKL 233
             +  L
Sbjct:   461 IATL 464


>DICTYBASE|DDB_G0282241 [details] [associations]
            symbol:DDB_G0282241 species:44689 "Dictyostelium
            discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0282241 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 EMBL:AAFI02000046 RefSeq:XP_640304.1
            ProteinModelPortal:Q54ST1 EnsemblProtists:DDB0205288 GeneID:8623480
            KEGG:ddi:DDB_G0282241 InParanoid:Q54ST1 OMA:IEMISID Uniprot:Q54ST1
        Length = 825

 Score = 448 (162.8 bits), Expect = 1.6e-41, P = 1.6e-41
 Identities = 93/199 (46%), Positives = 130/199 (65%)

Query:    22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81
             L E+  NVS+  +GGL D   ELR++IE P +  E F + G+ PPKG++LYGPPG  KT 
Sbjct:   560 LVENISNVSWDDIGGLDDIKEELRQAIEWPNLYKESFEKFGLSPPKGIILYGPPGCSKTT 619

Query:    82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141
             L +A+AS+   +FL +  + I   Y+G+S + IR++F  AR   P I+F DEIDAI  +R
Sbjct:   620 LVKAVASSSKLSFLSLSGATIFSPYLGDSEQTIRDIFKKARQTTPSILFFDEIDAIVSKR 679

Query:   142 -FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
               S+ +S D    R L   LN++DG +QL  V +I ATNR D++D ALLRPGR D+ +EI
Sbjct:   680 NLSDNSSGDNAQSRVLSTFLNEMDGVEQLNGVIVIGATNRLDMIDNALLRPGRFDKILEI 739

Query:   201 PLPNEQSRMEILKIHAAGI 219
              LP++ SR++ILKI    I
Sbjct:   740 KLPDQLSRLKILKIKTKSI 758

 Score = 368 (134.6 bits), Expect = 7.3e-33, P = 7.3e-33
 Identities = 80/191 (41%), Positives = 119/191 (62%)

Query:    34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93
             +GGL++QI+ L E +  P++ P++F  + I PPKG+LL GPPGTGKT L R +    D  
Sbjct:   289 IGGLNEQIKLLEEMMIYPILFPQVFKTLNIDPPKGILLKGPPGTGKTHLVRTVCDAYDIE 348

Query:    94 FLKVVSSAIIDKYIGESARLIREMFGYARD------HQPCIIFMDEIDAIGGRRFSEGTS 147
              + +  + I   YIGE+   +R +F  A D      + P ++F+DEID I   R S+ T 
Sbjct:   349 MISIDCAKISGSYIGETEENLRNIFQEASDKSIAKSNSPIVVFIDEIDTICPPR-SKSTQ 407

Query:   148 ADREIQRTLMELLNQLDGFD-QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQ 206
              +    R + + L  LDG   + G + +I ATNRP+ +D AL RPGRLDR+IEIP+PN+Q
Sbjct:   408 NE---SRVVGQFLTLLDGIGARKGNLIIIAATNRPNQIDNALRRPGRLDREIEIPVPNKQ 464

Query:   207 SRMEILKIHAA 217
              R++ILK++ +
Sbjct:   465 QRLDILKLYCS 475


>SGD|S000002284 [details] [associations]
            symbol:CDC48 "AAA ATPase involved in multiple processes"
            species:4932 "Saccharomyces cerevisiae" [GO:0005829 "cytosol"
            evidence=IDA] [GO:0043332 "mating projection tip" evidence=IDA]
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0030433 "ER-associated protein catabolic process"
            evidence=IMP] [GO:0000837 "Doa10p ubiquitin ligase complex"
            evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0007049
            "cell cycle" evidence=IEA] [GO:0015031 "protein transport"
            evidence=IEA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IEA] [GO:1900182 "positive regulation of
            protein localization to nucleus" evidence=IMP] [GO:0051228 "mitotic
            spindle disassembly" evidence=IMP] [GO:0016320 "endoplasmic
            reticulum membrane fusion" evidence=IMP] [GO:0034517 "ribophagy"
            evidence=IMP] [GO:0071712 "ER-associated misfolded protein
            catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
            transport, ER to cytosol" evidence=IMP] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0043130 "ubiquitin binding" evidence=IDA]
            [GO:0036266 "Cdc48p-Npl4p-Vms1p AAA ATPase complex" evidence=IDA]
            [GO:0071630 "nucleus-associated proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0034727 "piecemeal
            microautophagy of nucleus" evidence=IMP] [GO:0016236
            "macroautophagy" evidence=IMP] [GO:0031134 "sister chromatid
            biorientation" evidence=IMP] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0072671 "mitochondria-associated protein
            catabolic process" evidence=IMP] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IMP] [GO:0005789 "endoplasmic reticulum membrane"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 SGD:S000002284 Pfam:PF02359
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0043332
            EMBL:BK006938 GO:GO:0016887 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0016236 GO:GO:0031134
            GO:GO:0043130 GO:GO:0034727 GO:GO:0016320 GO:GO:0034517
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OrthoDB:EOG47H8Z3 GO:GO:0034098 GO:GO:0030970
            EMBL:X56956 EMBL:Z74174 PIR:S67669 RefSeq:NP_010157.1
            ProteinModelPortal:P25694 SMR:P25694 DIP:DIP-2704N IntAct:P25694
            MINT:MINT-547129 STRING:P25694 TCDB:3.A.16.1.2 PaxDb:P25694
            PeptideAtlas:P25694 PRIDE:P25694 EnsemblFungi:YDL126C GeneID:851431
            KEGG:sce:YDL126C CYGD:YDL126c GeneTree:ENSGT00700000104534
            OMA:TIPRITW NextBio:968654 Genevestigator:P25694 GermOnline:YDL126C
            GO:GO:0036266 GO:GO:0000837 GO:GO:0071629 GO:GO:0071712
            GO:GO:0072671 GO:GO:0051228 GO:GO:0071630 GO:GO:1900182
            Uniprot:P25694
        Length = 835

 Score = 447 (162.4 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 90/218 (41%), Positives = 137/218 (62%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+       +   V Y  +GG   Q+ ++RE +ELPL +P+LF  +GIKPP+GVL+Y
Sbjct:   195 EGEPINREDEENNMNEVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMY 254

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    ++ K  GES   +R+ F  A  + P IIF+D
Sbjct:   255 GPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFID 314

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EID+I  +R  + T+ + E +R + +LL  +DG      V +I ATNRP+ +DPAL R G
Sbjct:   315 EIDSIAPKR--DKTNGEVE-RRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALRRFG 371

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+E+L+IH   +    ++D EA+
Sbjct:   372 RFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEAL 409

 Score = 438 (159.2 bits), Expect = 2.1e-40, P = 2.1e-40
 Identities = 85/208 (40%), Positives = 130/208 (62%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV++  VGGL +   EL+E++E P+++P+ + + G+ P KGVL YGPPGTGKTLLA+A+A
Sbjct:   483 NVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVA 542

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             + + ANF+ V    ++  + GES   IR++F  AR   P ++F+DE+D+I   R      
Sbjct:   543 TEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGD 602

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + +LL ++DG +    V +I ATNRPD +DPA+LRPGRLD+ I +PLP+E +
Sbjct:   603 AGGASDRVVNQLLTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENA 662

Query:   208 RMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             R+ IL            ++  A+ K  +
Sbjct:   663 RLSILNAQLRKTPLEPGLELTAIAKATQ 690


>TAIR|locus:2052806 [details] [associations]
            symbol:VAR2 "VARIEGATED 2" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0008152 "metabolic
            process" evidence=IEA] [GO:0008237 "metallopeptidase activity"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010027
            "thylakoid membrane organization" evidence=RCA;IMP] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0010205 "photoinhibition"
            evidence=IMP] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009579
            "thylakoid" evidence=IDA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=RCA;TAS]
            [GO:0016020 "membrane" evidence=IDA] [GO:0030163 "protein catabolic
            process" evidence=IDA] [GO:0072593 "reactive oxygen species
            metabolic process" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] [GO:0042744 "hydrogen peroxide
            catabolic process" evidence=RCA] [GO:0042793 "transcription from
            plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] [GO:0010206
            "photosystem II repair" evidence=IMP] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0007275 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0006508
            GO:GO:0009941 GO:GO:0008237 GO:GO:0004222 EMBL:AC004669
            GO:GO:0010027 GO:GO:0072593 GO:GO:0010205 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 GO:GO:0031977
            GO:GO:0004176 GO:GO:0010206 HOGENOM:HOG000217276 KO:K03798
            GO:GO:0010304 EMBL:AF135189 EMBL:AY045599 EMBL:AY093791
            EMBL:AK221155 IPI:IPI00546467 PIR:F84714 RefSeq:NP_850156.1
            UniGene:At.22024 UniGene:At.71129 UniGene:At.75189
            ProteinModelPortal:O80860 SMR:O80860 IntAct:O80860 STRING:O80860
            MEROPS:M41.005 World-2DPAGE:0003:O80860 PaxDb:O80860 PRIDE:O80860
            ProMEX:O80860 EnsemblPlants:AT2G30950.1 GeneID:817646
            KEGG:ath:AT2G30950 GeneFarm:2504 TAIR:At2g30950 InParanoid:O80860
            OMA:LEIIAMR PhylomeDB:O80860 ProtClustDB:CLSN2679937
            Genevestigator:O80860 Uniprot:O80860
        Length = 695

 Score = 424 (154.3 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
 Identities = 83/202 (41%), Positives = 128/202 (63%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  V G+ +  ++  E +E  L  PE F  VG K PKGVLL GPPGTGKTLLA+AIA 
Sbjct:   224 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAG 282

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                  F  +  S  ++ ++G  A  +R++F  A+++ PCI+F+DEIDA+G +R +     
Sbjct:   283 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG 342

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E ++TL +LL ++DGF+    V ++ ATNR D+LD ALLRPGR DR++ + +P+ + R
Sbjct:   343 NDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGR 402

Query:   209 MEILKIHAAGIAKHGEIDYEAV 230
              +ILK+HA       ++  E +
Sbjct:   403 TDILKVHAGNKKFDNDVSLEII 424

 Score = 41 (19.5 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query:    12 REVDPVVYNMLHEDPGNVSYSAVGGLS 38
             + +D   +N   ED G+V ++ +G L+
Sbjct:   152 KNIDFAAHNA-QEDQGSVLFNLIGNLA 177


>TIGR_CMR|GSU_1180 [details] [associations]
            symbol:GSU_1180 "cell division protein FtsH"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            RefSeq:NP_952233.1 ProteinModelPortal:Q74DY5 SMR:Q74DY5
            GeneID:2686793 KEGG:gsu:GSU1180 PATRIC:22025134 OMA:VCQWGMS
            ProtClustDB:CLSK828230 BioCyc:GSUL243231:GH27-1166-MONOMER
            Uniprot:Q74DY5
        Length = 617

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 89/204 (43%), Positives = 131/204 (64%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  V G+ +   EL+E ++  L +P+ F R+G K PKGVLL GPPGTGKTLLARA+A 
Sbjct:   172 VTFDDVAGMENPKMELKEIVDY-LRDPKKFQRIGGKVPKGVLLVGPPGTGKTLLARAVAG 230

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
               D  FL + +S  I+ ++G  A  +R++F  A+   P IIF+DE+DA+G  R +     
Sbjct:   231 EADVTFLSISASQFIEMFVGVGAGRVRDLFATAKKSAPSIIFIDELDAVGRSRGAGLGGG 290

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
               E ++TL +LL+++DGFD   +V ++ ATNRPDVLDPALLRPGR DR + I  P+ + R
Sbjct:   291 HDEREQTLNQLLSEMDGFDSHDEVIVMAATNRPDVLDPALLRPGRFDRHVVIDRPDWRDR 350

Query:   209 MEILKIHAAGIAKHGEIDYEAVVK 232
              +IL +H   I    ++D   + +
Sbjct:   351 EKILHVHTRKIPLDKDVDLAVIAR 374


>TIGR_CMR|GSU_1809 [details] [associations]
            symbol:GSU_1809 "cell division protein FtsH"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            RefSeq:NP_952859.2 GeneID:2688702 KEGG:gsu:GSU1809 PATRIC:22026473
            ProtClustDB:CLSK828573 BioCyc:GSUL243231:GH27-1860-MONOMER
            Uniprot:Q74C66
        Length = 610

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 89/212 (41%), Positives = 131/212 (61%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             +L E  G V++  V G+ +   EL E I+  L +P+ F ++G + PKGVLL GPPGTGKT
Sbjct:   142 LLTEAQGRVTFEDVAGVDEAKEELEEIIQF-LKDPKKFTKLGGRIPKGVLLVGPPGTGKT 200

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARA+A      F  +  S  ++ ++G  A  +R++F   + + PCIIF+DEIDA+G  
Sbjct:   201 LLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFVQGKKNAPCIIFIDEIDAVGRH 260

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL +LL ++DGF+    V +I ATNRPDVLDPALLRPGR DR++ +
Sbjct:   261 RGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVV 320

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             P P+ + R  ILK+H        ++D   + +
Sbjct:   321 PQPDVKGREMILKVHTKKTPLASDVDLGVIAR 352


>DICTYBASE|DDB_G0288065 [details] [associations]
            symbol:cdcD "CDC48 family AAA ATPase" species:44689
            "Dictyostelium discoideum" [GO:0005615 "extracellular space"
            evidence=IDA] [GO:0045335 "phagocytic vesicle" evidence=IDA]
            [GO:0009617 "response to bacterium" evidence=IEP] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016787
            "hydrolase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0007049 "cell
            cycle" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0006200 "ATP catabolic
            process" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
            [GO:0051301 "cell division" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            dictyBase:DDB_G0288065 Pfam:PF02359 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005615 GO:GO:0045335 GO:GO:0009617 GO:GO:0051301
            GenomeReviews:CM000154_GR GO:GO:0016887 GO:GO:0007049 GO:GO:0030433
            HSSP:Q01853 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 EMBL:AAFI02000109 InterPro:IPR015415 Pfam:PF09336
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 OMA:AYRPIHK
            ProtClustDB:CLSZ2429060 EMBL:U83085 RefSeq:XP_636910.1
            ProteinModelPortal:P90532 SMR:P90532 STRING:P90532 PRIDE:P90532
            EnsemblProtists:DDB0191154 GeneID:8626465 KEGG:ddi:DDB_G0288065
            InParanoid:P90532 Uniprot:P90532
        Length = 793

 Score = 444 (161.4 bits), Expect = 3.8e-41, P = 3.8e-41
 Identities = 87/200 (43%), Positives = 132/200 (66%)

Query:    30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89
             ++  +GGL    RELRE+++ P+ +PE F + G++P KGVL YGPPG GKTLLA+AIA+ 
Sbjct:   473 TWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIANE 532

Query:    90 IDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSAD 149
               ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+I   R S    A 
Sbjct:   533 CQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDAG 592

Query:   150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM 209
                 R + ++L ++DG +    V +I ATNRPD++DPA+LRPGRLD+ I IPLP+  SR+
Sbjct:   593 GAGDRVINQILTEMDGMNAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLPSRV 652

Query:   210 EILK--IHAAGIAKHGEIDY 227
              ILK  ++ + +AK  ++++
Sbjct:   653 AILKACLNKSPVAKDVDLEF 672

 Score = 438 (159.2 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 89/202 (44%), Positives = 130/202 (64%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V Y  +GG+  Q+ ++RE +ELPL +P+LF  +G+KPPKG+LLYGPPG GKT++ARA+A+
Sbjct:   199 VGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVAN 258

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                A F  +    I+ K  GES   +R+ F  A  + P IIF+DEID+I  +R  E T  
Sbjct:   259 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTQG 316

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E +R + +LL  +DG      V ++ ATNRP+ +DPAL R GR DR+I+I +P+   R
Sbjct:   317 EVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDITIPDATGR 375

Query:   209 MEILKIHAAGIAKHGEIDYEAV 230
             +EI++IH   +     +D EAV
Sbjct:   376 LEIMRIHTKNMKLDETVDLEAV 397


>WB|WBGene00008053 [details] [associations]
            symbol:cdc-48.2 species:6239 "Caenorhabditis elegans"
            [GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
            helicase activity" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
            "meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=IMP] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IGI] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
            RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
            DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
            PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
            EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
            KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
            InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
        Length = 810

 Score = 444 (161.4 bits), Expect = 4.1e-41, P = 4.1e-41
 Identities = 87/209 (41%), Positives = 132/209 (63%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E P N ++S +GGL +  REL+E ++ P+ +PE +L+ G++P +GVL YGPPG GKTLLA
Sbjct:   475 ETP-NTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLA 533

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143
             +AIA+   ANF+ +    ++  + GES   +R++F  AR   PC++F DE+D+I   R  
Sbjct:   534 KAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGG 593

Query:   144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
                 A     R + ++L ++DG +    V +I ATNRPD++DPA+LRPGRLD+ I IPLP
Sbjct:   594 SVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLP 653

Query:   204 NEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             +E SR++I K          ++D   + K
Sbjct:   654 DEASRLQIFKASLRKTPLSADLDLNFLAK 682

 Score = 431 (156.8 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 90/218 (41%), Positives = 133/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E DP+      E    V Y  +GG+  Q+ +++E +ELPL +P+LF  +G+KPP+G+LL+
Sbjct:   190 EGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLF 249

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F     + P I+F+D
Sbjct:   250 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFID 309

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EIDAI  +R  E    + E +R + +LL  +DG      V +I ATNRP+ +D AL R G
Sbjct:   310 EIDAIAPKR--EKAHGEVE-KRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFG 366

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+I+I +P+   R+EIL+IH   +    ++D E V
Sbjct:   367 RFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQV 404


>UNIPROTKB|P54812 [details] [associations]
            symbol:cdc-48.2 "Transitional endoplasmic reticulum ATPase
            homolog 2" species:6239 "Caenorhabditis elegans" [GO:0042802
            "identical protein binding" evidence=IPI] [GO:0005515 "protein
            binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0040010
            GO:GO:0002119 GO:GO:0040011 EMBL:Z48334 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 HOGENOM:HOG000223224
            KO:K13525 InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z48045 PIR:T19879
            RefSeq:NP_495705.1 ProteinModelPortal:P54812 SMR:P54812
            DIP:DIP-26566N IntAct:P54812 MINT:MINT-1090535 STRING:P54812
            PaxDb:P54812 PRIDE:P54812 EnsemblMetazoa:C41C4.8.1
            EnsemblMetazoa:C41C4.8.2 EnsemblMetazoa:C41C4.8.3 GeneID:174309
            KEGG:cel:CELE_C41C4.8 UCSC:C41C4.8.1 CTD:174309 WormBase:C41C4.8
            InParanoid:P54812 OMA:ADRQDWE NextBio:883464 Uniprot:P54812
        Length = 810

 Score = 444 (161.4 bits), Expect = 4.1e-41, P = 4.1e-41
 Identities = 87/209 (41%), Positives = 132/209 (63%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E P N ++S +GGL +  REL+E ++ P+ +PE +L+ G++P +GVL YGPPG GKTLLA
Sbjct:   475 ETP-NTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLA 533

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143
             +AIA+   ANF+ +    ++  + GES   +R++F  AR   PC++F DE+D+I   R  
Sbjct:   534 KAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGG 593

Query:   144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
                 A     R + ++L ++DG +    V +I ATNRPD++DPA+LRPGRLD+ I IPLP
Sbjct:   594 SVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLP 653

Query:   204 NEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             +E SR++I K          ++D   + K
Sbjct:   654 DEASRLQIFKASLRKTPLSADLDLNFLAK 682

 Score = 431 (156.8 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 90/218 (41%), Positives = 133/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E DP+      E    V Y  +GG+  Q+ +++E +ELPL +P+LF  +G+KPP+G+LL+
Sbjct:   190 EGDPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLF 249

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F     + P I+F+D
Sbjct:   250 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFID 309

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EIDAI  +R  E    + E +R + +LL  +DG      V +I ATNRP+ +D AL R G
Sbjct:   310 EIDAIAPKR--EKAHGEVE-KRIVSQLLTLMDGLKTRAHVVVIAATNRPNSIDGALRRFG 366

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+I+I +P+   R+EIL+IH   +    ++D E V
Sbjct:   367 RFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQV 404


>SGD|S000003957 [details] [associations]
            symbol:RIX7 "Putative ATPase of the AAA family" species:4932
            "Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0000055 "ribosomal large subunit
            export from nucleus" evidence=IMP] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0042254
            "ribosome biogenesis" evidence=IEA] [GO:0042273 "ribosomal large
            subunit biogenesis" evidence=IGI;IMP] [GO:0030687 "preribosome,
            large subunit precursor" evidence=IDA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 SGD:S000003957
            GO:GO:0005524 GO:GO:0005730 EMBL:BK006945 GO:GO:0016887
            eggNOG:COG0464 HOGENOM:HOG000223225 GO:GO:0042273 GO:GO:0030687
            GO:GO:0000055 KO:K14571 OMA:NDMTLKE GeneTree:ENSGT00570000079239
            EMBL:Z73139 PIR:S64785 RefSeq:NP_013066.1 ProteinModelPortal:Q07844
            SMR:Q07844 DIP:DIP-6385N IntAct:Q07844 MINT:MINT-621241
            STRING:Q07844 PaxDb:Q07844 PeptideAtlas:Q07844 EnsemblFungi:YLL034C
            GeneID:850625 KEGG:sce:YLL034C CYGD:YLL034c OrthoDB:EOG40GH00
            NextBio:966532 Genevestigator:Q07844 GermOnline:YLL034C
            Uniprot:Q07844
        Length = 837

 Score = 444 (161.4 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 93/228 (40%), Positives = 141/228 (61%)

Query:     7 MRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPP 66
             ++ALP  + P           +V+++ VG L     EL  +I  P+  PEL+ +VGI  P
Sbjct:   509 LKALPT-IQPTAKREGFATVPDVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAP 567

Query:    67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQP 126
              GVLL+GPPG GKTLLA+A+A+   ANF+ +    +++KY+GES R IR++F  AR   P
Sbjct:   568 GGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRARASVP 627

Query:   127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186
             C+IF DE+DA+  RR    TS      R +  LL +LDG +    + +I ATNRPD++DP
Sbjct:   628 CVIFFDELDALVPRR---DTSLSESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDP 684

Query:   187 ALLRPGRLDRKIEIPLPNEQSRMEILKI--HAAGIAKHGEIDYEAVVK 232
             A+LRPGRLD+ + I LPN + +++I+K    + G     ++D+E +++
Sbjct:   685 AMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIR 732

 Score = 428 (155.7 bits), Expect = 2.5e-39, P = 2.5e-39
 Identities = 94/219 (42%), Positives = 139/219 (63%)

Query:    22 LHED--PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 79
             + ED  P N S  ++GG+ D + +L E I LP+++PE+FL  G++PP+GVLL+GPPG GK
Sbjct:   193 IKEDRSPPNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGK 252

Query:    80 TLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139
             T +A A+A  +   F+ + + +++    GES + IR++F  AR   PC++F DEIDAI  
Sbjct:   253 TSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCLVFFDEIDAITP 312

Query:   140 RRFSEGTSADREIQRTLM-ELLNQLDGFDQL---GK-VKMIMATNRPDVLDPALLRPGRL 194
             +R  +G  A RE++R ++ +LL  +D        GK V +I ATNRPD LD AL R GR 
Sbjct:   313 KR--DG-GAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRF 369

Query:   195 DRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             DR+I + +PNE SR+ ILK  +  +   G ID+  + KL
Sbjct:   370 DREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKL 408


>ASPGD|ASPL0000069340 [details] [associations]
            symbol:AN7254 species:162425 "Emericella nidulans"
            [GO:0071470 "cellular response to osmotic stress" evidence=IEP]
            [GO:0097308 "cellular response to farnesol" evidence=IEP]
            [GO:0030970 "retrograde protein transport, ER to cytosol"
            evidence=IEA] [GO:0031134 "sister chromatid biorientation"
            evidence=IEA] [GO:0033047 "regulation of mitotic sister chromatid
            segregation" evidence=IEA] [GO:0071629 "cytoplasm-associated
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:1900182 "positive regulation of protein
            localization to nucleus" evidence=IEA] [GO:0071630
            "nucleus-associated proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IEA] [GO:0051228
            "mitotic spindle disassembly" evidence=IEA] [GO:0016320
            "endoplasmic reticulum membrane fusion" evidence=IEA] [GO:0034727
            "piecemeal microautophagy of nucleus" evidence=IEA] [GO:0072671
            "mitochondria-associated protein catabolic process" evidence=IEA]
            [GO:0034517 "ribophagy" evidence=IEA] [GO:0061166 "establishment of
            endoplasmic reticulum localization involved in endoplasmic
            reticulum polarization at cell division site" evidence=IEA]
            [GO:0016236 "macroautophagy" evidence=IEA] [GO:0043130 "ubiquitin
            binding" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
            [GO:0043332 "mating projection tip" evidence=IEA] [GO:0000790
            "nuclear chromatin" evidence=IEA] [GO:0034098 "Cdc48p-Npl4p-Ufd1p
            AAA ATPase complex" evidence=IEA] [GO:0036266 "Cdc48p-Npl4p-Vms1p
            AAA ATPase complex" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0000837 "Doa10p ubiquitin ligase complex"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0006950 GO:GO:0015031 GO:GO:0007049 EMBL:BN001304 HSSP:Q01853
            eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 EMBL:AACD01000124 RefSeq:XP_680523.1
            STRING:Q5AWS6 PRIDE:Q5AWS6 GeneID:2869922 KEGG:ani:AN7254.2
            OrthoDB:EOG47H8Z3 Uniprot:Q5AWS6
        Length = 823

 Score = 443 (161.0 bits), Expect = 5.6e-41, P = 5.6e-41
 Identities = 90/218 (41%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+       +   V Y  +GG   Q+ ++RE +ELPL +P+LF  +GIKPP+G+L+Y
Sbjct:   206 EGEPIQREDEENNLNEVGYDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMY 265

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   266 GPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFID 325

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EID+I  +R  E T+ + E +R + +LL  +DG      V ++ ATNRP+ +DPAL R G
Sbjct:   326 EIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFG 382

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+++I +P+   R+EIL IH   +    ++D E +
Sbjct:   383 RFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETI 420

 Score = 423 (154.0 bits), Expect = 8.3e-39, P = 8.3e-39
 Identities = 85/203 (41%), Positives = 124/203 (61%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV +  +GGL +  REL ES++ P+ +PE F + G+ P +GVL YGPPGTGKT+LA+A+A
Sbjct:   495 NVRWEDIGGLEEVKRELIESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKTMLAKAVA 554

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +   ANF+ V    ++  + GES   IR++F  AR   PC++F+DE+D+I   R      
Sbjct:   555 NECAANFISVKGPELLSMWFGESESNIRDIFDKARAAAPCVVFLDELDSIAKSRGGSVGD 614

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + +LL ++DG      V +I ATNRP+ LD AL+RPGRLD  + +PLP++ S
Sbjct:   615 AGGASDRVVNQLLTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYVPLPDQAS 674

Query:   208 RMEILKIHAAGIAKHGEIDYEAV 230
             R  ILK          ++D E +
Sbjct:   675 REGILKAQLRKTPVASDVDIEFI 697


>UNIPROTKB|Q3AFJ8 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 RefSeq:YP_359086.1
            ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8 STRING:Q3AFJ8 MEROPS:M41.021
            GeneID:3726212 KEGG:chy:CHY_0214 PATRIC:21273609 OMA:TGKADDE
            BioCyc:CHYD246194:GJCN-215-MONOMER Uniprot:Q3AFJ8
        Length = 619

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 89/212 (41%), Positives = 131/212 (61%)

Query:    22 LHEDPGN-VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             LH D    V+++ V G+ +   EL E +E  L NP  +  +G + PKGVLL+G PGTGKT
Sbjct:   147 LHTDEKKRVTFADVAGIDEVKEELAEIVEF-LKNPRKYNELGARIPKGVLLFGQPGTGKT 205

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARAIA      F  +  S  ++ ++G  A  +R++F  A+ + PCI+F+DEIDA+G +
Sbjct:   206 LLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQ 265

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL +LL ++DGF+    + +I ATNRPD+LDPALLRPGR DR I +
Sbjct:   266 RGAGLGGGHDEREQTLNQLLVEMDGFNSNEGIIIIAATNRPDILDPALLRPGRFDRHIVV 325

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
               P+   R EILK+H  G     ++D + + +
Sbjct:   326 DTPDINGRKEILKVHVKGKPLGDDVDLDVLAR 357


>TIGR_CMR|CHY_0214 [details] [associations]
            symbol:CHY_0214 "cell division protein FtsH"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0000910 "cytokinesis" evidence=ISS] [GO:0004222
            "metalloendopeptidase activity" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0046872 EMBL:CP000141
            GenomeReviews:CP000141_GR GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
            RefSeq:YP_359086.1 ProteinModelPortal:Q3AFJ8 SMR:Q3AFJ8
            STRING:Q3AFJ8 MEROPS:M41.021 GeneID:3726212 KEGG:chy:CHY_0214
            PATRIC:21273609 OMA:TGKADDE BioCyc:CHYD246194:GJCN-215-MONOMER
            Uniprot:Q3AFJ8
        Length = 619

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 89/212 (41%), Positives = 131/212 (61%)

Query:    22 LHEDPGN-VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             LH D    V+++ V G+ +   EL E +E  L NP  +  +G + PKGVLL+G PGTGKT
Sbjct:   147 LHTDEKKRVTFADVAGIDEVKEELAEIVEF-LKNPRKYNELGARIPKGVLLFGQPGTGKT 205

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARAIA      F  +  S  ++ ++G  A  +R++F  A+ + PCI+F+DEIDA+G +
Sbjct:   206 LLARAIAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRQ 265

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL +LL ++DGF+    + +I ATNRPD+LDPALLRPGR DR I +
Sbjct:   266 RGAGLGGGHDEREQTLNQLLVEMDGFNSNEGIIIIAATNRPDILDPALLRPGRFDRHIVV 325

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
               P+   R EILK+H  G     ++D + + +
Sbjct:   326 DTPDINGRKEILKVHVKGKPLGDDVDLDVLAR 357


>UNIPROTKB|E1BPU3 [details] [associations]
            symbol:PEX1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0060152 "microtubule-based peroxisome localization"
            evidence=IEA] [GO:0042623 "ATPase activity, coupled" evidence=IEA]
            [GO:0032403 "protein complex binding" evidence=IEA] [GO:0016558
            "protein import into peroxisome matrix" evidence=IEA] [GO:0008022
            "protein C-terminus binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0005778 "peroxisomal membrane" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR015342 InterPro:IPR025653
            Pfam:PF00004 Pfam:PF09262 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0005778
            GO:GO:0016558 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0042623 GO:GO:0060152 PANTHER:PTHR23077:SF12 OMA:HSWEKEK
            InterPro:IPR015343 Pfam:PF09263 GeneTree:ENSGT00550000075032
            EMBL:DAAA02009765 EMBL:DAAA02009763 EMBL:DAAA02009764
            IPI:IPI00699088 Ensembl:ENSBTAT00000033872 Uniprot:E1BPU3
        Length = 1281

 Score = 447 (162.4 bits), Expect = 6.4e-41, P = 6.4e-41
 Identities = 99/237 (41%), Positives = 147/237 (62%)

Query:     1 MTTLTIMRALPREVDPV-VYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELF 58
             +TTL   +AL R   PV + N+ LH+ P ++ +  +GGL D  + L ++I+LP   PELF
Sbjct:   808 LTTLDFQKAL-RGFTPVSLRNVNLHK-PRDLGWDRIGGLHDVRQILVDTIQLPAKYPELF 865

Query:    59 LRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 118
               + I+   GVLLYGPPGTGKTLLA  IA     NF+ V    ++ KYIG S + +R++F
Sbjct:   866 ANLPIRQRTGVLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRDVF 925

Query:   119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178
               A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT
Sbjct:   926 VRAQAAKPCILFFDEFESIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAAT 982

Query:   179 NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             +RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +    ++D + V  L +
Sbjct:   983 SRPDLIDPALLRPGRLDKCVYCPPPDQASRLEILNVLSESLPLADDVDLQHVASLTD 1039


>UNIPROTKB|Q5LNU8 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
            [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887 "ATPase
            activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
            ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
            KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
            Uniprot:Q5LNU8
        Length = 639

 Score = 436 (158.5 bits), Expect = 6.5e-41, P = 6.5e-41
 Identities = 91/212 (42%), Positives = 130/212 (61%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             ML E  G V++  V G+ +   EL E +E  L NP+ F R+G K PKG LL GPPGTGKT
Sbjct:   145 MLTEKHGRVTFDDVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKT 203

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARAIA      F  +  S  ++ ++G  A  +R+MF  A+ + PCI+F+DEIDA+G  
Sbjct:   204 LLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRH 263

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +     + E ++TL +LL ++DGF+    V ++ ATNR DVLDPALLRPGR DR + +
Sbjct:   264 RGAGYGGGNDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTV 323

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
               P+ + R +IL +HA       ++D   + +
Sbjct:   324 GNPDIKGREKILGVHARKTPLGPDVDLRIIAR 355


>TIGR_CMR|SPO_3105 [details] [associations]
            symbol:SPO_3105 "ATP-dependent metalloprotease FtsH"
            species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 HOGENOM:HOG000217277
            TIGRFAMs:TIGR01241 KO:K03798 MEROPS:M41.001 RefSeq:YP_168308.1
            ProteinModelPortal:Q5LNU8 SMR:Q5LNU8 GeneID:3195808
            KEGG:sil:SPO3105 PATRIC:23379655 OMA:QINMEEV ProtClustDB:CLSK934061
            Uniprot:Q5LNU8
        Length = 639

 Score = 436 (158.5 bits), Expect = 6.5e-41, P = 6.5e-41
 Identities = 91/212 (42%), Positives = 130/212 (61%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             ML E  G V++  V G+ +   EL E +E  L NP+ F R+G K PKG LL GPPGTGKT
Sbjct:   145 MLTEKHGRVTFDDVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKT 203

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARAIA      F  +  S  ++ ++G  A  +R+MF  A+ + PCI+F+DEIDA+G  
Sbjct:   204 LLARAIAGEAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRH 263

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +     + E ++TL +LL ++DGF+    V ++ ATNR DVLDPALLRPGR DR + +
Sbjct:   264 RGAGYGGGNDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTV 323

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
               P+ + R +IL +HA       ++D   + +
Sbjct:   324 GNPDIKGREKILGVHARKTPLGPDVDLRIIAR 355


>CGD|CAL0000102 [details] [associations]
            symbol:RIX7 species:5476 "Candida albicans" [GO:0030448
            "hyphal growth" evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
            [GO:0000055 "ribosomal large subunit export from nucleus"
            evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
            evidence=IEA] [GO:0044011 "single-species biofilm formation on
            inanimate substrate" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0000102 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0030448 GO:GO:0044011 EMBL:AACQ01000021
            EMBL:AACQ01000022 KO:K14571 RefSeq:XP_720530.1 RefSeq:XP_720658.1
            ProteinModelPortal:Q5AGG2 STRING:Q5AGG2 GeneID:3637615
            GeneID:3637735 KEGG:cal:CaO19.11695 KEGG:cal:CaO19.4219
            Uniprot:Q5AGG2
        Length = 827

 Score = 442 (160.7 bits), Expect = 7.3e-41, P = 7.3e-41
 Identities = 97/232 (41%), Positives = 137/232 (59%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             +T    + ALP  V P           +V++  VG L     EL   I  P+  PEL+L+
Sbjct:   492 ITYQDFVNALP-SVQPSAKREGFATIPDVTWQNVGALFKIRMELHMCIVQPIKKPELYLK 550

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI  P GVL++GPPG GKTLLA+A+A+   ANF+ +    +++KY+GES + +R++F  
Sbjct:   551 VGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQR 610

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             AR   PCIIF DE+DA+  RR    TS      R +  LL +LDG +    V +I ATNR
Sbjct:   611 ARASTPCIIFFDELDALVPRR---DTSMSESSSRVVNTLLTELDGLNDRKGVFVIGATNR 667

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK--IHAAGIAKHGEIDYEAV 230
             PD++DPA+LRPGRLD+ + I LP  + R+EILK  +  +    H  +D  A+
Sbjct:   668 PDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSPLHANVDLNAI 719

 Score = 400 (145.9 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 88/213 (41%), Positives = 136/213 (63%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             N+  S++GG+     +L E I LP+++PE++   G++PP+GVLLYGPPG GKT +A A+A
Sbjct:   189 NIDLSSLGGVESVTTQLLEIIGLPILHPEIYSSTGVEPPRGVLLYGPPGCGKTTIANALA 248

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
               +   F+ + + +++    GES + +RE+F  A+   PC+IFMDEIDAI  +R  +G  
Sbjct:   249 GELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQIAPCLIFMDEIDAITPKR--DG-G 305

Query:   148 ADREIQRTLM-ELLNQLDGF--DQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202
             A RE+++ ++ +LL  +D    ++ G   V +I ATNRPD LD AL R GR DR+I + +
Sbjct:   306 AQREMEKRIVAQLLTLMDELTLEKTGGKPVVVIGATNRPDSLDSALRRAGRFDREICLNV 365

Query:   203 PNEQSRMEILKIHAAGIA-KHGE-IDYEAVVKL 233
             PNE+ R+ ILK     I  ++GE  +Y  + KL
Sbjct:   366 PNEEQRISILKAMTKNIKLENGEHFNYRELSKL 398

 Score = 37 (18.1 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query:     8 RALPREVDPVVYNMLHE 24
             R +   +D  +YN++H+
Sbjct:     5 RTVTGSLDQKIYNLIHD 21


>UNIPROTKB|Q5AGG2 [details] [associations]
            symbol:RIX7 "Putative uncharacterized protein"
            species:237561 "Candida albicans SC5314" [GO:0030448 "hyphal
            growth" evidence=IMP] [GO:0044011 "single-species biofilm formation
            on inanimate substrate" evidence=IMP] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 CGD:CAL0000102 GO:GO:0005524 eggNOG:COG0464
            GO:GO:0017111 GO:GO:0030448 GO:GO:0044011 EMBL:AACQ01000021
            EMBL:AACQ01000022 KO:K14571 RefSeq:XP_720530.1 RefSeq:XP_720658.1
            ProteinModelPortal:Q5AGG2 STRING:Q5AGG2 GeneID:3637615
            GeneID:3637735 KEGG:cal:CaO19.11695 KEGG:cal:CaO19.4219
            Uniprot:Q5AGG2
        Length = 827

 Score = 442 (160.7 bits), Expect = 7.3e-41, P = 7.3e-41
 Identities = 97/232 (41%), Positives = 137/232 (59%)

Query:     1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
             +T    + ALP  V P           +V++  VG L     EL   I  P+  PEL+L+
Sbjct:   492 ITYQDFVNALP-SVQPSAKREGFATIPDVTWQNVGALFKIRMELHMCIVQPIKKPELYLK 550

Query:    61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
             VGI  P GVL++GPPG GKTLLA+A+A+   ANF+ +    +++KY+GES + +R++F  
Sbjct:   551 VGIAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQR 610

Query:   121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
             AR   PCIIF DE+DA+  RR    TS      R +  LL +LDG +    V +I ATNR
Sbjct:   611 ARASTPCIIFFDELDALVPRR---DTSMSESSSRVVNTLLTELDGLNDRKGVFVIGATNR 667

Query:   181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK--IHAAGIAKHGEIDYEAV 230
             PD++DPA+LRPGRLD+ + I LP  + R+EILK  +  +    H  +D  A+
Sbjct:   668 PDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSPLHANVDLNAI 719

 Score = 400 (145.9 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 88/213 (41%), Positives = 136/213 (63%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             N+  S++GG+     +L E I LP+++PE++   G++PP+GVLLYGPPG GKT +A A+A
Sbjct:   189 NIDLSSLGGVESVTTQLLEIIGLPILHPEIYSSTGVEPPRGVLLYGPPGCGKTTIANALA 248

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
               +   F+ + + +++    GES + +RE+F  A+   PC+IFMDEIDAI  +R  +G  
Sbjct:   249 GELKVPFINISAPSVVSGMSGESEKKLREIFEEAKQIAPCLIFMDEIDAITPKR--DG-G 305

Query:   148 ADREIQRTLM-ELLNQLDGF--DQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202
             A RE+++ ++ +LL  +D    ++ G   V +I ATNRPD LD AL R GR DR+I + +
Sbjct:   306 AQREMEKRIVAQLLTLMDELTLEKTGGKPVVVIGATNRPDSLDSALRRAGRFDREICLNV 365

Query:   203 PNEQSRMEILKIHAAGIA-KHGE-IDYEAVVKL 233
             PNE+ R+ ILK     I  ++GE  +Y  + KL
Sbjct:   366 PNEEQRISILKAMTKNIKLENGEHFNYRELSKL 398

 Score = 37 (18.1 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 5/17 (29%), Positives = 11/17 (64%)

Query:     8 RALPREVDPVVYNMLHE 24
             R +   +D  +YN++H+
Sbjct:     5 RTVTGSLDQKIYNLIHD 21


>UNIPROTKB|P0C5C0 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0006508 "proteolysis" evidence=IMP;IDA] [GO:0006979 "response
            to oxidative stress" evidence=IDA] [GO:0010468 "regulation of gene
            expression" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
            [GO:0030163 "protein catabolic process" evidence=IMP] [GO:0040007
            "growth" evidence=IMP] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005829 GO:GO:0005886
            GO:GO:0005524 GO:GO:0040007 GO:GO:0006979 EMBL:AE000516
            GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0046872
            EMBL:BX842583 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 GO:GO:0010468
            HOGENOM:HOG000217276 KO:K03798 PIR:C70956 RefSeq:NP_218127.1
            RefSeq:NP_338259.1 RefSeq:YP_006517099.1 ProteinModelPortal:P0C5C0
            SMR:P0C5C0 PRIDE:P0C5C0 EnsemblBacteria:EBMYCT00000001212
            EnsemblBacteria:EBMYCT00000069111 GeneID:13317218 GeneID:885732
            GeneID:926520 KEGG:mtc:MT3714 KEGG:mtu:Rv3610c KEGG:mtv:RVBD_3610c
            PATRIC:18129921 TubercuList:Rv3610c OMA:RSEMIAR
            ProtClustDB:CLSK792593 Uniprot:P0C5C0
        Length = 760

 Score = 440 (159.9 bits), Expect = 8.5e-41, P = 8.5e-41
 Identities = 88/211 (41%), Positives = 130/211 (61%)

Query:    22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81
             L +D    +++ V G+ + + EL E  +  L NP  +  +G K PKGVLLYGPPGTGKTL
Sbjct:   153 LSKDMPKTTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVLLYGPPGTGKTL 211

Query:    82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141
             LARA+A      F  +  S  ++ ++G  A  +R++F  A+ + PCIIF+DEIDA+G +R
Sbjct:   212 LARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDAVGRQR 271

Query:   142 FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIP 201
              +       E ++TL +LL ++DGF     V +I ATNRPD+LDPALLRPGR DR+I + 
Sbjct:   272 GAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVS 331

Query:   202 LPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
              P+   R  +L++H+ G     + D + + K
Sbjct:   332 NPDLAGRRAVLRVHSKGKPMAADADLDGLAK 362


>UNIPROTKB|P96281 [details] [associations]
            symbol:Rv0435c "Transitional endoplasmic reticulum ATPase"
            species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
            wall" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005886 GO:GO:0005524 GO:GO:0005618
            GO:GO:0051301 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
            EMBL:BX842573 HSSP:Q01853 HOGENOM:HOG000223225 GO:GO:0017111
            Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692 KO:K13525
            SMART:SM01073 EMBL:CP003248 PIR:A70632 RefSeq:NP_214949.1
            RefSeq:NP_334860.1 RefSeq:YP_006513761.1 SMR:P96281
            EnsemblBacteria:EBMYCT00000001241 EnsemblBacteria:EBMYCT00000071017
            GeneID:13318302 GeneID:886352 GeneID:923768 KEGG:mtc:MT0451
            KEGG:mtu:Rv0435c KEGG:mtv:RVBD_0435c PATRIC:18122702
            TubercuList:Rv0435c OMA:KTHGFAG ProtClustDB:CLSK871802
            Uniprot:P96281
        Length = 728

 Score = 438 (159.2 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 94/228 (41%), Positives = 139/228 (60%)

Query:     4 LTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGI 63
             LT++R L R     V        G+V+   VG ++   + L E++  PL +P+ F R+G+
Sbjct:   442 LTVIRPLSRSASDEV------TVGDVTLDDVGDMAAAKQALTEAVLWPLQHPDTFARLGV 495

Query:    64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
             +PP+GVLLYGPPG GKT + RA+AS    +   V  S ++DK++G S + +RE+F  ARD
Sbjct:   496 EPPRGVLLYGPPGCGKTFVVRALASTGQLSVHAVKGSELMDKWVGSSEKAVRELFRRARD 555

Query:   124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQ-RTLMELLNQLDGFDQLGKVKMIMATNRPD 182
               P ++F+DE+DA+  RR   G S D  +  R +  LL +LDG D L  V M+ ATNRPD
Sbjct:   556 SAPSLVFLDELDALAPRR---GQSFDSGVSDRVVAALLTELDGIDPLRDVVMLGATNRPD 612

Query:   183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             ++DPALLRPGRL+R + +  P+  +R EIL+     I    ++D + V
Sbjct:   613 LIDPALLRPGRLERLVFVEPPDAAARREILRTAGKSIPLSSDVDLDEV 660

 Score = 132 (51.5 bits), Expect = 7.7e-06, P = 7.7e-06
 Identities = 49/179 (27%), Positives = 78/179 (43%)

Query:    36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95
             G   Q  +L E ++L L  P L   +G     GVL+ GP G GK  L RA+    D   L
Sbjct:   217 GAQPQAAKLTEWLKLALDEPHLLQTLGAGTNLGVLVSGPAGVGKATLVRAVC---DGRRL 273

Query:    96 KVVSSAIIDKYI-GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154
               +    I     G+  + +       R H+  ++ + + DA+          A  E   
Sbjct:   274 VTLDGPEIGALAAGDRVKAVASAVQAVR-HEGGVLLITDADAL--------LPAAAEPVA 324

Query:   155 TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK 213
             +L  +L++L        V +I  + RPD LD  L  P   DR++ +PLP+  +R  +L+
Sbjct:   325 SL--ILSELRTAVATAGVVLIATSARPDQLDARLRSPELCDRELGLPLPDAATRKSLLE 381


>DICTYBASE|DDB_G0278435 [details] [associations]
            symbol:DDB_G0278435 "AAA ATPase domain-containing
            protein" species:44689 "Dictyostelium discoideum" [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0278435 GO:GO:0005524 EMBL:AAFI02000023
            GO:GO:0016887 eggNOG:COG0464 KO:K14575 InterPro:IPR009010
            SUPFAM:SSF50692 RefSeq:XP_642364.1 ProteinModelPortal:Q54Y38
            EnsemblProtists:DDB0237527 GeneID:8621569 KEGG:ddi:DDB_G0278435
            InParanoid:Q54Y38 OMA:TSICREA Uniprot:Q54Y38
        Length = 886

 Score = 441 (160.3 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 87/198 (43%), Positives = 128/198 (64%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V +  +GG     ++L+E+IE PL  P+ F+R+GIKPPKG+LLYGPPG  KTLLA+A+A+
Sbjct:   619 VFWGDIGGQEHIKQKLKEAIEWPLKYPQSFIRMGIKPPKGILLYGPPGCSKTLLAKALAT 678

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                 NF+ V    ++ K++GES R +R++F  AR + P I+F DEID +   R  EG+ A
Sbjct:   679 ESGLNFIAVKGPELLSKWVGESERAVRDIFKKARQNSPSILFFDEIDGLAISRSGEGSGA 738

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
                ++R + +LL ++DG   L  V +I ATNRPD++D A+LR GR+DR + I  P+  +R
Sbjct:   739 ---VERVVSQLLTEMDGIQPLTNVTIIGATNRPDIIDKAILRAGRIDRILYISPPDLDAR 795

Query:   209 MEILKIHAAGIAKHGEID 226
              EI  IH   +    +ID
Sbjct:   796 KEIFNIHLKKVPHSSDID 813

 Score = 282 (104.3 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 56/138 (40%), Positives = 91/138 (65%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             N+++ ++GGL  Q++++RE I+L     +L    G+KPPKG+LLYGPPGTGKTLLAR +A
Sbjct:   308 NLNFQSIGGLDLQVKQIRELIDLSFYKLDLLKSFGVKPPKGILLYGPPGTGKTLLARIVA 367

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +  +A    +  + I+DK+ G + + ++++F  A    P IIF+DE+DA+  +R  E  S
Sbjct:   368 TQTNATLFTINGADILDKFYGMTEKTLQKIFKDAAQKSPSIIFIDELDALCPKR--EDNS 425

Query:   148 ADREIQRTLMELLNQLDG 165
             ++ E +R +  LL  +DG
Sbjct:   426 SEVE-KRIVGSLLTLMDG 442

 Score = 130 (50.8 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query:   171 KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219
             KV +I  TNRPD +D AL RPGR D +IEI +PN+Q R +IL I  + I
Sbjct:   468 KVIVIGCTNRPDSIDSALRRPGRFDNEIEISIPNQQGREQILNIFLSKI 516


>TAIR|locus:2157637 [details] [associations]
            symbol:VAR1 "VARIEGATED 1" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISS;IDA]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA;IDA]
            [GO:0004176 "ATP-dependent peptidase activity" evidence=ISS]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010304 "PSII
            associated light-harvesting complex II catabolic process"
            evidence=RCA;TAS] [GO:0009579 "thylakoid" evidence=IDA] [GO:0010205
            "photoinhibition" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            [GO:0009773 "photosynthetic electron transport in photosystem I"
            evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
            evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            GO:GO:0016021 GO:GO:0007275 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006508 GO:GO:0009941
            GO:GO:0004222 GO:GO:0016887 EMBL:AB023032 GO:GO:0010205
            eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0009535
            HOGENOM:HOG000217276 KO:K03798 ProtClustDB:CLSN2688633
            GO:GO:0010304 EMBL:AY126987 IPI:IPI00517420 RefSeq:NP_568604.1
            UniGene:At.21670 UniGene:At.66720 ProteinModelPortal:Q9FH02
            SMR:Q9FH02 STRING:Q9FH02 MEROPS:M41.024 PaxDb:Q9FH02 PRIDE:Q9FH02
            EnsemblPlants:AT5G42270.1 GeneID:834232 KEGG:ath:AT5G42270
            GeneFarm:4746 TAIR:At5g42270 InParanoid:Q9FH02 OMA:RARASMP
            PhylomeDB:Q9FH02 Genevestigator:Q9FH02 GermOnline:AT5G42270
            Uniprot:Q9FH02
        Length = 704

 Score = 437 (158.9 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 88/205 (42%), Positives = 133/205 (64%)

Query:    29 VSYSAVGGLSDQIR-ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             V++  V G +DQ + EL+E ++  L NP+ +  +G K PKG LL GPPGTGKTLLARA+A
Sbjct:   247 VTFGDVAG-ADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVA 304

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
                   F    +S  ++ ++G  A  +R++F  A+   PCI+F+DEIDA+G +R +    
Sbjct:   305 GEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGG 364

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
              + E ++T+ +LL ++DGF     V ++ ATNRPDVLD ALLRPGR DR++ +  P+   
Sbjct:   365 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 424

Query:   208 RMEILKIHAAGIAKHGEIDYEAVVK 232
             R++ILK+H+ G A   ++DYE V +
Sbjct:   425 RVQILKVHSRGKAIGKDVDYEKVAR 449


>ZFIN|ZDB-GENE-060312-22 [details] [associations]
            symbol:zgc:136908 "zgc:136908" species:7955 "Danio
            rerio" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 ZFIN:ZDB-GENE-060312-22
            GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 HOGENOM:HOG000223224
            InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243
            GeneTree:ENSGT00700000104534 HOVERGEN:HBG001226 EMBL:CU571167
            EMBL:BC114306 IPI:IPI00835697 RefSeq:NP_001035017.1
            UniGene:Dr.47664 SMR:Q29RA2 STRING:Q29RA2
            Ensembl:ENSDART00000100551 GeneID:563679 KEGG:dre:563679
            InParanoid:Q29RA2 OrthoDB:EOG4WWRMB NextBio:20885016 Uniprot:Q29RA2
        Length = 805

 Score = 439 (159.6 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 90/218 (41%), Positives = 135/218 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E +P+      E   ++ Y  +GG   Q+ +++E +ELPL +P LF  +G+KPP+G+LLY
Sbjct:   187 EGEPIKREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 246

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   A F  +    I+ K  GES   +R+ F  A  + P IIF+D
Sbjct:   247 GPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 306

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             E+DAI  +R  E T  + E +R + +LL  +DG  Q   V ++ ATNRP+ +D AL R G
Sbjct:   307 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVVVMAATNRPNSVDAALRRFG 363

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+I+I +P+   R+EIL+IH   +    ++D E +
Sbjct:   364 RFDREIDIGIPDSTGRLEILQIHTKNMKLSEDVDLEQI 401

 Score = 430 (156.4 bits), Expect = 1.3e-39, P = 1.3e-39
 Identities = 87/210 (41%), Positives = 132/210 (62%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             +V++  +GGL +  REL+E ++ P+  P+ FL+ G+ P +GVL YGPPG GKTLLA+AIA
Sbjct:   475 HVNWEDIGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIA 534

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +   ANF+ +    ++  + GES   +R++F  AR   PCI+F DE+D+I   R      
Sbjct:   535 NECQANFVSIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKARGGGAGD 594

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + ++L ++DG      V +I ATNRPD++DPA+LRPGRLD+ I IPLP+  S
Sbjct:   595 AGGAADRVINQILTEMDGMTNKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDMPS 654

Query:   208 RMEILK--IHAAGIAKHGEIDYEAVVKLAE 235
             R  IL+  +  + +AK  ++D   + K+ E
Sbjct:   655 RTAILRANLRKSPVAK--DVDLMYLSKITE 682


>WB|WBGene00010562 [details] [associations]
            symbol:cdc-48.3 species:6239 "Caenorhabditis elegans"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
            or egg hatching" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            [GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0007091
            "metaphase/anaphase transition of mitotic cell cycle" evidence=IMP]
            [GO:0007052 "mitotic spindle organization" evidence=IMP]
            [GO:0007067 "mitosis" evidence=IMP] [GO:0019901 "protein kinase
            binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
            [GO:0006469 "negative regulation of protein kinase activity"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
            "ATP catabolic process" evidence=IDA] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0009792 GO:GO:0006898
            GO:GO:0005737 GO:GO:0040007 GO:GO:0040010 GO:GO:0007052
            GO:GO:0002119 GO:GO:0006469 GO:GO:0000003 GO:GO:0016887 HSSP:Q01853
            eggNOG:COG0464 HOGENOM:HOG000223225 GeneTree:ENSGT00700000104502
            GO:GO:0007091 EMBL:Z75712 KO:K13525 PIR:T23322 RefSeq:NP_492211.1
            ProteinModelPortal:Q21222 SMR:Q21222 PaxDb:Q21222
            EnsemblMetazoa:K04G2.3 GeneID:172586 KEGG:cel:CELE_K04G2.3
            UCSC:K04G2.3 CTD:172586 WormBase:K04G2.3 InParanoid:Q21222
            OMA:QVAPTIV NextBio:876139 Uniprot:Q21222
        Length = 724

 Score = 436 (158.5 bits), Expect = 1.8e-40, P = 1.8e-40
 Identities = 92/204 (45%), Positives = 131/204 (64%)

Query:    12 REVDPV-VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVL 70
             + + P  +   + E P NVS++ +GG  +   E+++++  P  +PE F R GI PP G+L
Sbjct:   439 KRIRPTGIRQFILEVP-NVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGIL 497

Query:    71 LYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIF 130
             LYGPPG  KTL+ARA+AS    NFL V    +  K++G+S + IR++F  AR   P I+F
Sbjct:   498 LYGPPGCSKTLIARALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVF 557

Query:   131 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR 190
              DEIDA+G  R SE +S   +  R L +LL +LDG ++  +V ++ ATNRPD LD ALLR
Sbjct:   558 FDEIDAVGSSRGSEKSSGVSD--RVLAQLLTELDGLEKSSRVILLAATNRPDQLDSALLR 615

Query:   191 PGRLDRKIEIPLPNEQSRMEILKI 214
             PGRLDR I + LP E +R  IL++
Sbjct:   616 PGRLDRAIYVGLPCEVTRRAILEM 639


>POMBASE|SPBC16E9.10c [details] [associations]
            symbol:SPBC16E9.10c "AAA family ATPase Rix7
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000055
            "ribosomal large subunit export from nucleus" evidence=ISO]
            [GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
            evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0016887
            "ATPase activity" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBC16E9.10c GO:GO:0005524 GO:GO:0005730
            EMBL:CU329671 GO:GO:0016887 HSSP:Q01853 eggNOG:COG0464
            HOGENOM:HOG000223225 GO:GO:0000055 KO:K14571 OMA:NDMTLKE
            OrthoDB:EOG40GH00 PIR:T39584 RefSeq:NP_595792.1
            ProteinModelPortal:O14325 STRING:O14325 EnsemblFungi:SPBC16E9.10c.1
            GeneID:2539968 KEGG:spo:SPBC16E9.10c NextBio:20801111
            Uniprot:O14325
        Length = 779

 Score = 437 (158.9 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 90/205 (43%), Positives = 129/205 (62%)

Query:    26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85
             PG VS++ +G L     EL+ +I  P+  PEL+  VGI  P GVLL+GPPG GKTLLA+A
Sbjct:   487 PG-VSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKA 545

Query:    86 IASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145
             +A+   ANF+ +    +++KY+GES R +R++F  AR   PC+IF DE+DA+  RR    
Sbjct:   546 VANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSL 605

Query:   146 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNE 205
             + A   +  TL   L +LDG      V +I ATNRPD++DPA+LRPGRLD+ + + LP+ 
Sbjct:   606 SEASSRVVNTL---LTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDA 662

Query:   206 QSRMEILKIHAAGIAKHGEIDYEAV 230
               R+EILK        H E++ + +
Sbjct:   663 HERVEILKTLTKQTPLHEEVNLDVL 687

 Score = 422 (153.6 bits), Expect = 8.7e-39, P = 8.7e-39
 Identities = 86/211 (40%), Positives = 135/211 (63%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E P ++S S +GGL D I EL E + +P+ +PE++   GI PP+GVLL+GPPG GKT+LA
Sbjct:   166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143
              A+A+ +   F+ + + +I+    GES + +RE+F  A+   PC++F+DEIDA+  +R S
Sbjct:   226 NALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRES 285

Query:   144 EGTSADREIQRTLMELLNQLDGFDQL-GK-VKMIMATNRPDVLDPALLRPGRLDRKIEIP 201
                  +R I    +  +++L  F++  GK V +I ATNRPD LD AL R GR DR+I + 
Sbjct:   286 AQREMERRIVAQFLTCMDELS-FEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLT 344

Query:   202 LPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             +P++ +R +IL+  A G+   G+ D+  + K
Sbjct:   345 VPSQDAREKILRTMAKGLKLSGDFDFRQLAK 375


>WB|WBGene00007352 [details] [associations]
            symbol:cdc-48.1 species:6239 "Caenorhabditis elegans"
            [GO:0016887 "ATPase activity" evidence=IEA;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
            "DNA recombination" evidence=IEA] [GO:0009378 "four-way junction
            helicase activity" evidence=IEA] [GO:0009792 "embryo development
            ending in birth or egg hatching" evidence=IGI;IMP] [GO:0040002
            "collagen and cuticulin-based cuticle development" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0051301 "cell division"
            evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0007126
            "meiosis" evidence=IMP] [GO:0030968 "endoplasmic reticulum unfolded
            protein response" evidence=IMP] [GO:0071712 "ER-associated
            misfolded protein catabolic process" evidence=IGI] [GO:0034098
            "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IPI] [GO:0005634
            "nucleus" evidence=IDA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0005634 GO:GO:0009792 GO:GO:0007126 GO:GO:0002119
            GO:GO:0040011 GO:GO:0040018 GO:GO:0016887 GO:GO:0000910
            eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            InterPro:IPR015415 Pfam:PF09336 GO:GO:0030968 GO:GO:0040002
            HOGENOM:HOG000223224 KO:K13525 OMA:QIANECH InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 GO:GO:0034098 GeneTree:ENSGT00700000104534
            GO:GO:0071712 EMBL:Z49886 PIR:T18970 RefSeq:NP_496273.1
            ProteinModelPortal:P54811 SMR:P54811 DIP:DIP-26650N IntAct:P54811
            MINT:MINT-1061999 STRING:P54811 PaxDb:P54811 PRIDE:P54811
            EnsemblMetazoa:C06A1.1.1 EnsemblMetazoa:C06A1.1.2 GeneID:174624
            KEGG:cel:CELE_C06A1.1 UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1
            InParanoid:P54811 NextBio:884814 Uniprot:P54811
        Length = 809

 Score = 437 (158.9 bits), Expect = 2.4e-40, P = 2.4e-40
 Identities = 86/191 (45%), Positives = 127/191 (66%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E P N ++S +GGL +  REL+E ++ P+ +PE +L+ G++P +GVL YGPPG GKTLLA
Sbjct:   476 ETP-NTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLA 534

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG-GRRF 142
             +AIA+   ANF+ +    ++  + GES   +R++F  AR   PC++F DE+D+I   R  
Sbjct:   535 KAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGG 594

Query:   143 SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202
               G        R + ++L ++DG +    V +I ATNRPD++DPA+LRPGRLD+ I IPL
Sbjct:   595 GAGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 654

Query:   203 PNEQSRMEILK 213
             P+E SR +ILK
Sbjct:   655 PDEASRHQILK 665

 Score = 437 (158.9 bits), Expect = 2.4e-40, P = 2.4e-40
 Identities = 88/218 (40%), Positives = 137/218 (62%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E DP+      E   ++ Y  +GG+  Q+ +++E +ELPL +P+LF  +GIKPP+G+LL+
Sbjct:   191 EGDPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLF 250

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   + F  +    ++ K  GES   +R+ F     +QP I+F+D
Sbjct:   251 GPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFID 310

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EIDAI  +R  E T+ + E +R + +LL  +DG      + +I ATNRP+ +D AL R G
Sbjct:   311 EIDAIAPKR--EKTNGEVE-RRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFG 367

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+I+I +P+   R+EIL+IH   +    ++D E +
Sbjct:   368 RFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQI 405


>UNIPROTKB|P54811 [details] [associations]
            symbol:cdc-48.1 "Transitional endoplasmic reticulum ATPase
            homolog 1" species:6239 "Caenorhabditis elegans" [GO:0005515
            "protein binding" evidence=IPI] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
            GO:GO:0007126 GO:GO:0002119 GO:GO:0040011 GO:GO:0040018
            GO:GO:0016887 GO:GO:0000910 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 InterPro:IPR015415 Pfam:PF09336
            GO:GO:0030968 GO:GO:0040002 HOGENOM:HOG000223224 KO:K13525
            OMA:QIANECH InterPro:IPR004201 PANTHER:PTHR23077:SF18 Pfam:PF02933
            SMART:SM01072 SMART:SM01073 TIGRFAMs:TIGR01243 GO:GO:0034098
            GeneTree:ENSGT00700000104534 GO:GO:0071712 EMBL:Z49886 PIR:T18970
            RefSeq:NP_496273.1 ProteinModelPortal:P54811 SMR:P54811
            DIP:DIP-26650N IntAct:P54811 MINT:MINT-1061999 STRING:P54811
            PaxDb:P54811 PRIDE:P54811 EnsemblMetazoa:C06A1.1.1
            EnsemblMetazoa:C06A1.1.2 GeneID:174624 KEGG:cel:CELE_C06A1.1
            UCSC:C06A1.1.1 CTD:174624 WormBase:C06A1.1 InParanoid:P54811
            NextBio:884814 Uniprot:P54811
        Length = 809

 Score = 437 (158.9 bits), Expect = 2.4e-40, P = 2.4e-40
 Identities = 86/191 (45%), Positives = 127/191 (66%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E P N ++S +GGL +  REL+E ++ P+ +PE +L+ G++P +GVL YGPPG GKTLLA
Sbjct:   476 ETP-NTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLA 534

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG-GRRF 142
             +AIA+   ANF+ +    ++  + GES   +R++F  AR   PC++F DE+D+I   R  
Sbjct:   535 KAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGG 594

Query:   143 SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202
               G        R + ++L ++DG +    V +I ATNRPD++DPA+LRPGRLD+ I IPL
Sbjct:   595 GAGGDGGGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 654

Query:   203 PNEQSRMEILK 213
             P+E SR +ILK
Sbjct:   655 PDEASRHQILK 665

 Score = 437 (158.9 bits), Expect = 2.4e-40, P = 2.4e-40
 Identities = 88/218 (40%), Positives = 137/218 (62%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E DP+      E   ++ Y  +GG+  Q+ +++E +ELPL +P+LF  +GIKPP+G+LL+
Sbjct:   191 EGDPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLF 250

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPGTGKTL+ARA+A+   + F  +    ++ K  GES   +R+ F     +QP I+F+D
Sbjct:   251 GPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFID 310

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EIDAI  +R  E T+ + E +R + +LL  +DG      + +I ATNRP+ +D AL R G
Sbjct:   311 EIDAIAPKR--EKTNGEVE-RRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFG 367

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
             R DR+I+I +P+   R+EIL+IH   +    ++D E +
Sbjct:   368 RFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQI 405


>UNIPROTKB|F1RQN5 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 GO:GO:0005524 GO:GO:0005737
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
            EMBL:FP102941 EMBL:CU463172 Ensembl:ENSSSCT00000009950
            Uniprot:F1RQN5
        Length = 778

 Score = 434 (157.8 bits), Expect = 4.3e-40, P = 4.3e-40
 Identities = 85/186 (45%), Positives = 127/186 (68%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+Y  +GGL+ Q++E+RE IELPL  PELF   GI PP+GVLLYGPPGTGKT++ARA+A+
Sbjct:   344 VTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVAN 403

Query:    89 NIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
              + A ++ V++   II K+ GE+   +R++F  A    P IIF+DE+DA+  +R      
Sbjct:   404 EVGA-YVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNE 462

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
              ++ +  +L+ L++ +      G+V ++ ATNRP  LD AL RPGR D++IEI +PN Q 
Sbjct:   463 VEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQD 522

Query:   208 RMEILK 213
             R++IL+
Sbjct:   523 RLDILQ 528

 Score = 390 (142.3 bits), Expect = 2.6e-35, P = 2.6e-35
 Identities = 79/178 (44%), Positives = 116/178 (65%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             ++ P     +  D  NVS+S +GGL +   +L++++E PL +PE F ++GI+PPKGVLLY
Sbjct:   602 DIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLY 661

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPG  KT++A+A+A+    NFL +    +++KY+GES R +RE+F  AR   P IIF D
Sbjct:   662 GPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFD 721

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR 190
             E+DA+   R S  + A     R L +LL ++DG +QL  V ++ ATNRPD +D  LLR
Sbjct:   722 ELDALAVERGSS-SGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKELLR 778


>TIGR_CMR|CBU_1352 [details] [associations]
            symbol:CBU_1352 "ATP-dependent metalloprotease FtsH"
            species:227377 "Coxiella burnetii RSA 493" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030163
            TIGRFAMs:TIGR01241 HSSP:P28691 HOGENOM:HOG000217276 KO:K03798
            MEROPS:M41.001 OMA:RSIIDQC RefSeq:NP_820341.1
            ProteinModelPortal:Q83BY5 SMR:Q83BY5 PRIDE:Q83BY5 GeneID:1209258
            KEGG:cbu:CBU_1352 PATRIC:17931447 ProtClustDB:CLSK914722
            BioCyc:CBUR227377:GJ7S-1342-MONOMER Uniprot:Q83BY5
        Length = 647

 Score = 429 (156.1 bits), Expect = 5.0e-40, P = 5.0e-40
 Identities = 87/195 (44%), Positives = 126/195 (64%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             +L +D   V++  V G+ +   E++E +E  L +P  F R+G K P GVLL GPPGTGKT
Sbjct:   145 LLSQDQVKVTFDDVAGVDEAKEEVKELVEF-LRDPGKFQRLGGKMPCGVLLVGPPGTGKT 203

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLA+A+A      F  +  S  ++ ++G  A  +R+MF  A+   PCIIF+DEIDA+G  
Sbjct:   204 LLAKAVAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKQAPCIIFIDEIDAVGRH 263

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL +LL ++DGF+    + ++ ATNRPDVLDPALLRPGR DR++ +
Sbjct:   264 RGAGLGGGHDEREQTLNQLLVEMDGFEGKEGIIVMAATNRPDVLDPALLRPGRFDRQVVV 323

Query:   201 PLPNEQSRMEILKIH 215
             PLP+ + R  ILK+H
Sbjct:   324 PLPDIKGREYILKVH 338


>UNIPROTKB|F1MFP1 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 GO:GO:0005524 GO:GO:0005737
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
            EMBL:DAAA02044760 EMBL:DAAA02044756 EMBL:DAAA02044757
            EMBL:DAAA02044758 EMBL:DAAA02044759 IPI:IPI00912761
            Ensembl:ENSBTAT00000000136 Uniprot:F1MFP1
        Length = 771

 Score = 433 (157.5 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/186 (45%), Positives = 127/186 (68%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+Y  +GGL+ Q++E+RE IELPL  PELF   GI PP+GVLLYGPPGTGKT++ARA+A+
Sbjct:   341 VTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVAN 400

Query:    89 NIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
              + A ++ V++   II K+ GE+   +R++F  A    P IIF+DE+DA+  +R      
Sbjct:   401 EVGA-YVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNE 459

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
              ++ +  +L+ L++ +      G+V ++ ATNRP  LD AL RPGR D++IEI +PN Q 
Sbjct:   460 VEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQD 519

Query:   208 RMEILK 213
             R++IL+
Sbjct:   520 RLDILQ 525

 Score = 382 (139.5 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 76/173 (43%), Positives = 113/173 (65%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             ++ P     +  D  NVS+S +GGL +   +L++++E PL +PE F ++GI+PPKGVLLY
Sbjct:   599 DIRPSAMREVAVDVPNVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLY 658

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPG  KT++A+A+A+    NFL +    +++KY+GES R +RE+F  AR   P IIF D
Sbjct:   659 GPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFD 718

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             E+DA+   R S  + A     R L +LL ++DG +QL  V ++ ATNRPD +D
Sbjct:   719 ELDALAVERGSS-SGAGNVADRVLAQLLTEMDGIEQLKNVTILAATNRPDRID 770


>TIGR_CMR|DET_0391 [details] [associations]
            symbol:DET_0391 "ATP-dependent metalloprotease FtsH"
            species:243164 "Dehalococcoides ethenogenes 195" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 EMBL:CP000027 GenomeReviews:CP000027_GR
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 OMA:LEIIAMR MEROPS:M41.021
            RefSeq:YP_181136.1 ProteinModelPortal:Q3Z9G3 SMR:Q3Z9G3
            STRING:Q3Z9G3 GeneID:3230280 KEGG:det:DET0391 PATRIC:21607849
            ProtClustDB:CLSK837509 BioCyc:DETH243164:GJNF-391-MONOMER
            Uniprot:Q3Z9G3
        Length = 608

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 89/215 (41%), Positives = 134/215 (62%)

Query:    18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGT 77
             ++NM   D   ++++ V G+ +  +E+ E +E  L + E F  +G + PKG+LL GPPGT
Sbjct:   148 LFNM---DKPTITFANVAGVDEAKQEVGEVVEF-LKSREKFQALGARIPKGILLIGPPGT 203

Query:    78 GKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI 137
             GKTLLA+AIA      F  +  S  ++ ++G  A  +R++F  A+ + PCIIF+DEIDA+
Sbjct:   204 GKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAV 263

Query:   138 GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRK 197
             G +R +       E ++TL ++L ++DGFD    V +I ATNRPD+LDPALLRPGR DR+
Sbjct:   264 GRQRGAGLGGGHDEREQTLNQILVEMDGFDTDTSVIVIAATNRPDILDPALLRPGRFDRR 323

Query:   198 IEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             + +  P+   R  ILKIHA G      ++ E + K
Sbjct:   324 VVLDKPDITGREAILKIHAKGKPLADTVNLENLAK 358


>UNIPROTKB|Q2GIT4 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006200 "ATP catabolic process"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 EMBL:CP000235 GenomeReviews:CP000235_GR
            GO:GO:0030163 eggNOG:COG0465 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
            SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
            PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
            Uniprot:Q2GIT4
        Length = 611

 Score = 425 (154.7 bits), Expect = 6.9e-40, P = 6.9e-40
 Identities = 88/213 (41%), Positives = 131/213 (61%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             ++ +  G V++  V G+ +   EL E ++  L + + F ++G K PKG LL G PGTGKT
Sbjct:   147 LMTDSRGKVTFDDVAGIEEAKEELIEIVDF-LKHRQKFTKLGGKIPKGCLLIGSPGTGKT 205

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARAIA   +  F  +  S  ++ ++G  A  +R+MF   + H PCIIF+DEIDA+G  
Sbjct:   206 LLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIFVDEIDAVGRH 265

Query:   141 R-FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE 199
             R    G   D E ++TL +LL ++DGF+    V +I ATNRPDVLDPALLRPGR DR++ 
Sbjct:   266 RGIGLGGGND-EREQTLNQLLVEMDGFESNEGVVIIAATNRPDVLDPALLRPGRFDRQVT 324

Query:   200 IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             I +P+   R +I+ +HA  +    ++D   + +
Sbjct:   325 ISIPDINGREKIIAVHAKKVPLAPDVDLRVIAR 357


>TIGR_CMR|APH_1179 [details] [associations]
            symbol:APH_1179 "ATP-dependent metalloprotease FtsH"
            species:212042 "Anaplasma phagocytophilum HZ" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 GO:GO:0000910 EMBL:CP000235
            GenomeReviews:CP000235_GR GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001
            ProtClustDB:CLSK749654 RefSeq:YP_505717.1 ProteinModelPortal:Q2GIT4
            SMR:Q2GIT4 STRING:Q2GIT4 GeneID:3930902 KEGG:aph:APH_1179
            PATRIC:20951138 OMA:GHAVVAM BioCyc:APHA212042:GHPM-1185-MONOMER
            Uniprot:Q2GIT4
        Length = 611

 Score = 425 (154.7 bits), Expect = 6.9e-40, P = 6.9e-40
 Identities = 88/213 (41%), Positives = 131/213 (61%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             ++ +  G V++  V G+ +   EL E ++  L + + F ++G K PKG LL G PGTGKT
Sbjct:   147 LMTDSRGKVTFDDVAGIEEAKEELIEIVDF-LKHRQKFTKLGGKIPKGCLLIGSPGTGKT 205

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARAIA   +  F  +  S  ++ ++G  A  +R+MF   + H PCIIF+DEIDA+G  
Sbjct:   206 LLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKHAPCIIFVDEIDAVGRH 265

Query:   141 R-FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE 199
             R    G   D E ++TL +LL ++DGF+    V +I ATNRPDVLDPALLRPGR DR++ 
Sbjct:   266 RGIGLGGGND-EREQTLNQLLVEMDGFESNEGVVIIAATNRPDVLDPALLRPGRFDRQVT 324

Query:   200 IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
             I +P+   R +I+ +HA  +    ++D   + +
Sbjct:   325 ISIPDINGREKIIAVHAKKVPLAPDVDLRVIAR 357


>UNIPROTKB|F1NLN4 [details] [associations]
            symbol:SPATA5 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0005737
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 SMART:SM01073 OMA:NDIRPSA
            EMBL:AADN02009235 IPI:IPI00593232 Ensembl:ENSGALT00000019309
            Uniprot:F1NLN4
        Length = 704

 Score = 430 (156.4 bits), Expect = 7.3e-40, P = 7.3e-40
 Identities = 85/190 (44%), Positives = 126/190 (66%)

Query:    25 DPG-NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             D G  V+Y  +GGLS Q++ +RE++ELPL   ELF   GI PP+GVLLYGPPGTGKTL+A
Sbjct:   310 DHGPQVTYDMIGGLSSQLKTIRETVELPLKRAELFKSYGISPPRGVLLYGPPGTGKTLIA 369

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143
             +AIA+ + A+   +    II K+ GES   +R++F  A   +P IIF+DE+DA+  +R  
Sbjct:   370 KAIANEVGAHVTVINGPEIISKFYGESESRLRQIFAEASLRRPSIIFIDELDALCPKREG 429

Query:   144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
                  ++ +  +L+ L++ +      G++ ++ ATNRP  LD AL RPGR D++IEI +P
Sbjct:   430 AQNEVEKRVVASLLTLMDGIGSEGSEGQLVVLGATNRPHALDAALRRPGRFDKEIEIGIP 489

Query:   204 NEQSRMEILK 213
             N Q R++IL+
Sbjct:   490 NAQDRLDILQ 499

 Score = 308 (113.5 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 60/130 (46%), Positives = 87/130 (66%)

Query:    12 REVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLL 71
             ++V P     +  D   VS+S +GGL D   +L++++E PL +P+ F+R+GI+PPKGVLL
Sbjct:   572 KDVRPSAMREVAVDVPKVSWSDIGGLEDVKLKLKQAVEWPLKHPDSFIRMGIQPPKGVLL 631

Query:    72 YGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFM 131
             YGPPG  KT++A+A+A     NFL V    +++KY+GES R +RE+F  AR   P I+F 
Sbjct:   632 YGPPGCSKTMIAKALAHESGLNFLAVKGPELMNKYVGESERAVREIFRKARMVSPSILFF 691

Query:   132 DEIDAIGGRR 141
             DEIDA+   R
Sbjct:   692 DEIDALAVER 701


>UNIPROTKB|E1BY08 [details] [associations]
            symbol:PEX1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005778 "peroxisomal membrane"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008022
            "protein C-terminus binding" evidence=IEA] [GO:0016558 "protein
            import into peroxisome matrix" evidence=IEA] [GO:0032403 "protein
            complex binding" evidence=IEA] [GO:0042623 "ATPase activity,
            coupled" evidence=IEA] [GO:0060152 "microtubule-based peroxisome
            localization" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR015342 InterPro:IPR025653
            Pfam:PF00004 Pfam:PF09262 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0005778
            GO:GO:0016558 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0042623 GO:GO:0060152 KO:K13338 PANTHER:PTHR23077:SF12
            CTD:5189 OMA:HSWEKEK InterPro:IPR015343 Pfam:PF09263
            GeneTree:ENSGT00550000075032 EMBL:AADN02000702 EMBL:AADN02000703
            IPI:IPI00602002 RefSeq:XP_418655.2 UniGene:Gga.2955
            ProteinModelPortal:E1BY08 Ensembl:ENSGALT00000015329 GeneID:420554
            KEGG:gga:420554 NextBio:20823448 Uniprot:E1BY08
        Length = 1290

 Score = 437 (158.9 bits), Expect = 7.6e-40, P = 7.6e-40
 Identities = 96/233 (41%), Positives = 144/233 (61%)

Query:     1 MTTLTIMRALPREVDPVVY-NM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELF 58
             ++T+   +AL ++  P+   N+ LH+ P ++ +  +GGL D  + L ++I LP   PELF
Sbjct:   817 LSTVDFQKAL-KDFTPLALRNVSLHK-PKDIGWDRIGGLKDVRQILMDTIMLPAKYPELF 874

Query:    59 LRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF 118
               + I+   GVLLYG PGTGKTLLA  +A     NF+ V    ++ KYIG S + +R++F
Sbjct:   875 ANLPIRQRSGVLLYGAPGTGKTLLAGVVARESGMNFISVKGPELLSKYIGASEQAVRDIF 934

Query:   119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178
               A+  +PCI+F DE D+I  RR  + T       R + +LL QLDG + L  V ++ AT
Sbjct:   935 SRAQAAKPCIVFFDEFDSIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAAT 991

Query:   179 NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKI--HAAGIAKHGEIDYEA 229
             +RPD++DPALLRPGRLD+ +  P P++ SR EILK   H+  +A   +++Y A
Sbjct:   992 SRPDLIDPALLRPGRLDKCLYCPPPDQSSRCEILKALSHSLSLANDVDLEYLA 1044

 Score = 122 (48.0 bits), Expect = 0.00022, P = 0.00022
 Identities = 56/202 (27%), Positives = 98/202 (48%)

Query:    51 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN----IDANFLKVVSSAIIDKY 106
             PL      + VG++   GVLL G  G+GK+ LA+AI       +DA+   +   A+  K 
Sbjct:   586 PLSQKLAGIAVGLRSG-GVLLTGGKGSGKSTLAKAICKEAFDRLDAHVEVIDCKALRGKR 644

Query:   107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGG-RRFSEGTSADREIQRT-LMELLNQL- 163
             +G   + + E F  A   QP II +D++D I G     E  ++   +Q + L  +L  L 
Sbjct:   645 LGNIRKNVEEAFLEASWRQPSIILLDDLDHIVGVPPTPEHENSPETVQSSRLAYVLKDLI 704

Query:   164 DGFDQLGKVKMIMATNRPD-VLDPALLRP-G-RLDRKIE-IPLPNEQSRMEIL------K 213
                  LG +  ++AT++ +  L P+L+   G  + +  + I  P+++ R E+L      K
Sbjct:   705 KEVISLGSLIALIATSQSEHALHPSLVSAQGTHIFQCFKCIQSPDQKQRCEMLCSVIKNK 764

Query:   214 IHAAGIAKHGEIDYEAVVKLAE 235
             ++   + K  ++D + V K  E
Sbjct:   765 LNC-DVKKFSDLDLQYVAKETE 785


>UNIPROTKB|Q55700 [details] [associations]
            symbol:ftsH2 "ATP-dependent zinc metalloprotease FtsH 2"
            species:1111708 "Synechocystis sp. PCC 6803 substr. Kazusa"
            [GO:0010206 "photosystem II repair" evidence=IMP] [GO:0042651
            "thylakoid membrane" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0009523 "photosystem II" evidence=IDA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006508 GO:GO:0004222
            GO:GO:0030163 eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241
            EMBL:BA000022 GenomeReviews:BA000022_GR GO:GO:0042651 GO:GO:0010206
            HOGENOM:HOG000217276 KO:K03798 PIR:S76378 RefSeq:NP_442160.1
            RefSeq:YP_005652219.1 ProteinModelPortal:Q55700 SMR:Q55700
            IntAct:Q55700 STRING:Q55700 MEROPS:M41.017 GeneID:12253438
            GeneID:952628 KEGG:syn:slr0228 KEGG:syy:SYNGTS_2266 PATRIC:23841938
            OMA:NTASTRM Uniprot:Q55700
        Length = 627

 Score = 426 (155.0 bits), Expect = 7.8e-40, P = 7.8e-40
 Identities = 85/204 (41%), Positives = 128/204 (62%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V +  V G+ +   EL+E +   L  PE F  VG K PKGVLL GPPGTGKTLLA+AIA 
Sbjct:   169 VMFDDVAGIDEAKEELQEVVTF-LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 227

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                  F  +  S  ++ ++G  A  +R++F  A+++ PC+IF+DEIDA+G +R +     
Sbjct:   228 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGG 287

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E ++TL +LL ++DGF+    + +I ATNRPDVLD AL+RPGR DR++ +  P+   R
Sbjct:   288 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGR 347

Query:   209 MEILKIHAAGIAKHGEIDYEAVVK 232
              EIL++HA       E+  +++ +
Sbjct:   348 KEILEVHARNKKLAPEVSIDSIAR 371


>TAIR|locus:2011952 [details] [associations]
            symbol:FTSH1 "FTSH protease 1" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0031977
            "thylakoid lumen" evidence=IDA] [GO:0010206 "photosystem II repair"
            evidence=TAS] [GO:0010304 "PSII associated light-harvesting complex
            II catabolic process" evidence=RCA;TAS] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0007275
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 eggNOG:COG0465
            TIGRFAMs:TIGR01241 GO:GO:0009535 GO:GO:0031977 GO:GO:0004176
            GO:GO:0010206 EMBL:AC007980 EMBL:X99808 EMBL:AY091095 EMBL:AY123034
            EMBL:Y12780 IPI:IPI00518805 PIR:G96538 RefSeq:NP_564563.1
            UniGene:At.21777 ProteinModelPortal:Q39102 SMR:Q39102 STRING:Q39102
            MEROPS:M41.020 PaxDb:Q39102 PRIDE:Q39102 EnsemblPlants:AT1G50250.1
            GeneID:841447 KEGG:ath:AT1G50250 GeneFarm:2667 TAIR:At1g50250
            HOGENOM:HOG000217276 InParanoid:Q39102 KO:K03798 OMA:GGNPAMN
            PhylomeDB:Q39102 ProtClustDB:CLSN2688633 Genevestigator:Q39102
            GermOnline:AT1G50250 GO:GO:0010304 Uniprot:Q39102
        Length = 716

 Score = 430 (156.4 bits), Expect = 8.0e-40, P = 8.0e-40
 Identities = 86/205 (41%), Positives = 134/205 (65%)

Query:    29 VSYSAVGGLSDQIR-ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             VS++ V G +DQ + EL+E ++  L NP+ +  +G K PKG LL GPPGTGKTLLARA+A
Sbjct:   259 VSFADVAG-ADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVA 316

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
                   F    +S  ++ ++G  A  +R++F  A+   PCI+F+DEIDA+G +R +    
Sbjct:   317 GEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGG 376

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
              + E ++T+ +LL ++DGF     V ++ ATNRPDVLD ALLRPGR DR++ +  P+   
Sbjct:   377 GNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAG 436

Query:   208 RMEILKIHAAGIAKHGEIDYEAVVK 232
             R++IL++H+ G A   ++D++ V +
Sbjct:   437 RVKILQVHSRGKALGKDVDFDKVAR 461


>UNIPROTKB|P0AAI3 [details] [associations]
            symbol:ftsH species:83333 "Escherichia coli K-12"
            [GO:0016887 "ATPase activity" evidence=IDA] [GO:0006508
            "proteolysis" evidence=IEA;IDA] [GO:0043273 "CTPase activity"
            evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA;IDA]
            [GO:0030145 "manganese ion binding" evidence=IDA] [GO:0016021
            "integral to membrane" evidence=IEA;IDA] [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0004222 "metalloendopeptidase
            activity" evidence=IEA] [GO:0006200 "ATP catabolic process"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0008237 "metallopeptidase activity" evidence=IEA] [GO:0008233
            "peptidase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0008270 GO:GO:0006508 EMBL:U18997
            GO:GO:0004222 GO:GO:0016887 GO:GO:0030145 GO:GO:0030163
            eggNOG:COG0465 TIGRFAMs:TIGR01241 GO:GO:0043273 EMBL:U01376
            HOGENOM:HOG000217276 KO:K03798 EMBL:M83138 PIR:S35109
            RefSeq:NP_417645.1 RefSeq:YP_491363.1 PDB:1LV7 PDBsum:1LV7
            ProteinModelPortal:P0AAI3 SMR:P0AAI3 DIP:DIP-35828N IntAct:P0AAI3
            MINT:MINT-1226643 MEROPS:M41.001 PaxDb:P0AAI3 PRIDE:P0AAI3
            EnsemblBacteria:EBESCT00000000369 EnsemblBacteria:EBESCT00000000370
            EnsemblBacteria:EBESCT00000017485 GeneID:12933986 GeneID:947690
            KEGG:ecj:Y75_p3098 KEGG:eco:b3178 PATRIC:32121774 EchoBASE:EB1469
            EcoGene:EG11506 OMA:RSIIDQC ProtClustDB:PRK10733
            BioCyc:EcoCyc:EG11506-MONOMER BioCyc:ECOL316407:JW3145-MONOMER
            BioCyc:MetaCyc:EG11506-MONOMER SABIO-RK:P0AAI3
            EvolutionaryTrace:P0AAI3 Genevestigator:P0AAI3 Uniprot:P0AAI3
        Length = 644

 Score = 427 (155.4 bits), Expect = 8.1e-40, P = 8.1e-40
 Identities = 89/212 (41%), Positives = 131/212 (61%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             ML ED    +++ V G  +   E+ E +E  L  P  F ++G K PKGVL+ GPPGTGKT
Sbjct:   141 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 199

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLA+AIA      F  +  S  ++ ++G  A  +R+MF  A+   PCIIF+DEIDA+G +
Sbjct:   200 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 259

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL ++L ++DGF+    + +I ATNRPDVLDPALLRPGR DR++ +
Sbjct:   260 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 319

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
              LP+ + R +ILK+H   +    +ID   + +
Sbjct:   320 GLPDVRGREQILKVHMRRVPLAPDIDAAIIAR 351


>GENEDB_PFALCIPARUM|PF14_0616 [details] [associations]
            symbol:PF14_0616 "i-AAA protease, putative"
            species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
            EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
            ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
            EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
            EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
            Uniprot:Q8IKI9
        Length = 706

 Score = 429 (156.1 bits), Expect = 9.5e-40, P = 9.5e-40
 Identities = 91/198 (45%), Positives = 130/198 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+++ V G  +  +EL E I+  L N + F ++G K PKG+LL G PGTGKTL+ARAIA 
Sbjct:   251 VTFADVKGCDEVKQELEEIIDY-LKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAG 309

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
               +  FL+   S   + ++G  AR IRE+F  A+ H PCI+F+DEIDA+G +R S   SA
Sbjct:   310 EANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRDNSA 369

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
                ++ TL +LL +LDGF+Q   + +I ATN P  LD AL+RPGRLD+ I +PLP+ + R
Sbjct:   370 ---VRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIKGR 426

Query:   209 MEILKIHAAGIAKHGEID 226
              EILK+++  I    ++D
Sbjct:   427 YEILKMYSNKIVLSKDVD 444


>UNIPROTKB|Q8IKI9 [details] [associations]
            symbol:PF14_0616 "ATP-dependent protease la, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
            evidence=RCA] InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005524 GO:GO:0016020 GO:GO:0006508 GO:GO:0004222
            EMBL:AE014187 GO:GO:0030163 GO:GO:0017111 TIGRFAMs:TIGR01241
            HOGENOM:HOG000217276 HSSP:Q9LCZ4 RefSeq:XP_001348790.1
            ProteinModelPortal:Q8IKI9 SMR:Q8IKI9 PRIDE:Q8IKI9
            EnsemblProtists:PF14_0616:mRNA GeneID:812198 KEGG:pfa:PF14_0616
            EuPathDB:PlasmoDB:PF3D7_1464900 OMA:HMENVET ProtClustDB:CLSZ2434669
            Uniprot:Q8IKI9
        Length = 706

 Score = 429 (156.1 bits), Expect = 9.5e-40, P = 9.5e-40
 Identities = 91/198 (45%), Positives = 130/198 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+++ V G  +  +EL E I+  L N + F ++G K PKG+LL G PGTGKTL+ARAIA 
Sbjct:   251 VTFADVKGCDEVKQELEEIIDY-LKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAG 309

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
               +  FL+   S   + ++G  AR IRE+F  A+ H PCI+F+DEIDA+G +R S   SA
Sbjct:   310 EANVPFLQASGSEFEEMFVGVGARRIRELFQAAKKHAPCIVFIDEIDAVGSKRSSRDNSA 369

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
                ++ TL +LL +LDGF+Q   + +I ATN P  LD AL+RPGRLD+ I +PLP+ + R
Sbjct:   370 ---VRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDIKGR 426

Query:   209 MEILKIHAAGIAKHGEID 226
              EILK+++  I    ++D
Sbjct:   427 YEILKMYSNKIVLSKDVD 444


>TAIR|locus:2094892 [details] [associations]
            symbol:EMB2083 "embryo defective 2083" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004176 "ATP-dependent peptidase activity"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0004252 "serine-type endopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0009793 "embryo development ending in seed dormancy"
            evidence=NAS] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0000023 "maltose metabolic process"
            evidence=RCA] [GO:0010304 "PSII associated light-harvesting complex
            II catabolic process" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
            SMART:SM00382 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AB023046
            eggNOG:COG0465 GO:GO:0017111 IPI:IPI00526963 RefSeq:NP_566541.1
            UniGene:At.38918 ProteinModelPortal:A8MPR5 SMR:A8MPR5 STRING:A8MPR5
            PaxDb:A8MPR5 PRIDE:A8MPR5 EnsemblPlants:AT3G16290.1 GeneID:820876
            KEGG:ath:AT3G16290 TAIR:At3g16290 HOGENOM:HOG000015086
            InParanoid:A8MPR5 OMA:FFTHGEM PhylomeDB:A8MPR5
            ProtClustDB:CLSN2688442 Genevestigator:A8MPR5 Uniprot:A8MPR5
        Length = 876

 Score = 431 (156.8 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 91/209 (43%), Positives = 132/209 (63%)

Query:    28 NVSYSAVGGLSDQIR-ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAI 86
             +V ++ V GL  +IR EL E ++    + E++ R G+K P G+LL GPPG GKTLLA+A+
Sbjct:   406 DVKFTDVAGLG-KIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAV 463

Query:    87 ASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGT 146
             A     NF  + +S  ++ Y+G  A  +R ++  AR++ P ++F+DE+DA+G  R     
Sbjct:   464 AGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELDAVGRERGLIKG 523

Query:   147 SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQ 206
             S  +E   TL +LL  LDGF+  G+V  I +TNRPD+LDPAL+RPGR DRKI IP P   
Sbjct:   524 SGGQERDATLNQLLVSLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLI 583

Query:   207 SRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
              RMEIL++HA       ++DY AV  + +
Sbjct:   584 GRMEILQVHARKKPMAEDLDYMAVASMTD 612


>UNIPROTKB|E2RLT2 [details] [associations]
            symbol:PEX1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0060152 "microtubule-based peroxisome
            localization" evidence=IEA] [GO:0042623 "ATPase activity, coupled"
            evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
            [GO:0016558 "protein import into peroxisome matrix" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0005778 "peroxisomal membrane"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR015342 InterPro:IPR025653
            Pfam:PF00004 Pfam:PF09262 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0005778
            GO:GO:0016558 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0042623 GO:GO:0060152 KO:K13338 PANTHER:PTHR23077:SF12
            CTD:5189 InterPro:IPR015343 Pfam:PF09263
            GeneTree:ENSGT00550000075032 EMBL:AAEX03009307 RefSeq:XP_532459.1
            ProteinModelPortal:E2RLT2 Ensembl:ENSCAFT00000003132 GeneID:475227
            KEGG:cfa:475227 NextBio:20851103 Uniprot:E2RLT2
        Length = 1267

 Score = 434 (157.8 bits), Expect = 1.5e-39, P = 1.5e-39
 Identities = 94/234 (40%), Positives = 144/234 (61%)

Query:     1 MTTLTIMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL 59
             +TTL   +AL   +   + N+ LH+ P ++ +  +GGL +  + L ++I+LP   PELF 
Sbjct:   793 LTTLDFQKALQGFIPASLRNVNLHK-PRDLGWDKIGGLHEVRQILWDTIQLPAKYPELFA 851

Query:    60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFG 119
              + I+   GVLLYGPPGTGKTLLA  IA     NF+ V    ++ KYIG S + +R++F 
Sbjct:   852 NLPIRQRMGVLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRDIFI 911

Query:   120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179
              A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT+
Sbjct:   912 RAQAAKPCILFFDEFESIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAATS 968

Query:   180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +    ++D + V  +
Sbjct:   969 RPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASV 1022

 Score = 118 (46.6 bits), Expect = 0.00062, P = 0.00062
 Identities = 51/175 (29%), Positives = 85/175 (48%)

Query:    51 PLMNPELFLRVGIKPPKGVLLY-GPPGTGKTLLARAI---ASN-IDANFLKVVSSAIIDK 105
             PL    + L  G++   G LL+ G  G+GK+ LA+AI   AS+ +DA+   V   A+  K
Sbjct:   562 PLSRQLMSLVAGLR--NGALLFTGGKGSGKSTLAKAICKEASDTLDAHVEVVGCKALRGK 619

Query:   106 YIGESARLIREMFGYARDHQPCIIFMDEIDAIGG----RRFSEGTSADREIQRTLMELLN 161
              +    + +   F  A   QP +I +D++D I G         G  A +  QR    L +
Sbjct:   620 RLENIQKTVELAFSEATWRQPSVILLDDLDLIVGVPAAPEHEHGPEAVQS-QRLAHALSD 678

Query:   162 QLDGFDQLGKVKMIMATNRPD-VLDPALLRP-G-RLDRKIE-IPLPNEQSRMEIL 212
              +  F  +G +  ++AT++    L P L+   G  + + ++ I  PN++ R EIL
Sbjct:   679 MMKEFISMGSLVAVIATSQSQHSLHPWLVSAQGIHIFQCVQHIQPPNQEQRCEIL 733


>UNIPROTKB|E2RCK9 [details] [associations]
            symbol:PEX1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0042623 "ATPase activity, coupled" evidence=IEA] [GO:0006625
            "protein targeting to peroxisome" evidence=IEA] [GO:0005778
            "peroxisomal membrane" evidence=IEA] [GO:0005509 "calcium ion
            binding" evidence=IEA] InterPro:IPR001125 InterPro:IPR002048
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR011992 InterPro:IPR015342 InterPro:IPR025653
            Pfam:PF00004 Pfam:PF09262 Pfam:PF13499 PRINTS:PR00450
            PROSITE:PS00674 PROSITE:PS50222 SMART:SM00054 SMART:SM00382
            Prosite:PS00018 GO:GO:0005524 GO:GO:0005509 Gene3D:1.10.238.10
            InterPro:IPR018247 GO:GO:0005778 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 GO:GO:0042623 GO:GO:0006625
            PANTHER:PTHR23077:SF12 InterPro:IPR015343 Pfam:PF09263
            GeneTree:ENSGT00550000075032 EMBL:AAEX03009307
            Ensembl:ENSCAFT00000038397 Uniprot:E2RCK9
        Length = 1416

 Score = 434 (157.8 bits), Expect = 1.9e-39, P = 1.9e-39
 Identities = 94/234 (40%), Positives = 144/234 (61%)

Query:     1 MTTLTIMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL 59
             +TTL   +AL   +   + N+ LH+ P ++ +  +GGL +  + L ++I+LP   PELF 
Sbjct:   942 LTTLDFQKALQGFIPASLRNVNLHK-PRDLGWDKIGGLHEVRQILWDTIQLPAKYPELFA 1000

Query:    60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFG 119
              + I+   GVLLYGPPGTGKTLLA  IA     NF+ V    ++ KYIG S + +R++F 
Sbjct:  1001 NLPIRQRMGVLLYGPPGTGKTLLAGVIARESGMNFISVKGPELLSKYIGASEQAVRDIFI 1060

Query:   120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179
              A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT+
Sbjct:  1061 RAQAAKPCILFFDEFESIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAATS 1117

Query:   180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
             RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +    ++D + V  +
Sbjct:  1118 RPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASV 1171

 Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
 Identities = 51/175 (29%), Positives = 85/175 (48%)

Query:    51 PLMNPELFLRVGIKPPKGVLLY-GPPGTGKTLLARAI---ASN-IDANFLKVVSSAIIDK 105
             PL    + L  G++   G LL+ G  G+GK+ LA+AI   AS+ +DA+   V   A+  K
Sbjct:   711 PLSRQLMSLVAGLR--NGALLFTGGKGSGKSTLAKAICKEASDTLDAHVEVVGCKALRGK 768

Query:   106 YIGESARLIREMFGYARDHQPCIIFMDEIDAIGG----RRFSEGTSADREIQRTLMELLN 161
              +    + +   F  A   QP +I +D++D I G         G  A +  QR    L +
Sbjct:   769 RLENIQKTVELAFSEATWRQPSVILLDDLDLIVGVPAAPEHEHGPEAVQS-QRLAHALSD 827

Query:   162 QLDGFDQLGKVKMIMATNRPD-VLDPALLRP-G-RLDRKIE-IPLPNEQSRMEIL 212
              +  F  +G +  ++AT++    L P L+   G  + + ++ I  PN++ R EIL
Sbjct:   828 MMKEFISMGSLVAVIATSQSQHSLHPWLVSAQGIHIFQCVQHIQPPNQEQRCEIL 882


>ASPGD|ASPL0000029469 [details] [associations]
            symbol:AN5588 species:162425 "Emericella nidulans"
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006457 "protein
            folding" evidence=IEA] [GO:0006515 "misfolded or incompletely
            synthesized protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=IEA] [GO:0031942 "i-AAA
            complex" evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0016020 GO:GO:0006508
            GO:GO:0004222 EMBL:BN001305 GO:GO:0030163 GO:GO:0017111
            TIGRFAMs:TIGR01241 OMA:SEFDEVY EnsemblFungi:CADANIAT00003489
            Uniprot:C8VG17
        Length = 784

 Score = 428 (155.7 bits), Expect = 2.0e-39, P = 2.0e-39
 Identities = 92/204 (45%), Positives = 129/204 (63%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V +S V G  +   EL+E +E  L+NPE F  +G K PKGVLL GPPGTGKTLLARA+A 
Sbjct:   312 VRFSDVHGCDEAKDELQELVEF-LLNPERFSSLGGKLPKGVLLVGPPGTGKTLLARAVAG 370

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                  F  +  S   + Y+G  A+ +RE+F  AR   P IIF+DE+DAIG +R +E  +A
Sbjct:   371 EAGVPFFYMSGSEFDEVYVGVGAKRVRELFNQARSKSPAIIFIDELDAIGAKR-NERDAA 429

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
                +++TL +LL +LDGF Q   V ++ ATN P++LD AL RPGR DRK+ + LP+ + R
Sbjct:   430 --YVKQTLNQLLTELDGFSQSTGVIILAATNYPELLDKALTRPGRFDRKVVVDLPDVRGR 487

Query:   209 MEILKIHAAGIAKHGEIDYEAVVK 232
             M+ILK H   +    ++D   + +
Sbjct:   488 MDILKHHMKNVQISTDVDVAVIAR 511


>CGD|CAL0002985 [details] [associations]
            symbol:orf19.3949 species:5476 "Candida albicans" [GO:0042406
            "extrinsic to endoplasmic reticulum membrane" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000122 "negative
            regulation of transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0031936
            "negative regulation of chromatin silencing" evidence=IEA]
            [GO:0042393 "histone binding" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] InterPro:IPR001487 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439
            PROSITE:PS00674 PROSITE:PS50014 SMART:SM00382 CGD:CAL0002985
            GO:GO:0005524 eggNOG:COG0464 GO:GO:0017111 Gene3D:1.20.920.10
            SUPFAM:SSF47370 EMBL:AACQ01000012 EMBL:AACQ01000011
            RefSeq:XP_721858.1 RefSeq:XP_722018.1 ProteinModelPortal:Q5AK72
            STRING:Q5AK72 GeneID:3636302 GeneID:3636397 KEGG:cal:CaO19.11431
            KEGG:cal:CaO19.3949 Uniprot:Q5AK72
        Length = 1314

 Score = 433 (157.5 bits), Expect = 2.1e-39, P = 2.1e-39
 Identities = 90/193 (46%), Positives = 124/193 (64%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             N+ +S VGGL + I +L+E + LPL+ PEL+    I PP+GVL +GPPGTGKTL+ARA+A
Sbjct:   396 NIDFSVVGGLDNYINQLKEMVALPLLYPELYQNFAITPPRGVLFHGPPGTGKTLMARALA 455

Query:    88 SNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142
             ++   +  K+       +  + K++GE+ R +R +F  A++ QP IIF DEID +   R 
Sbjct:   456 ASCSTSERKITFFMRKGADCLSKWVGEAERQLRLLFEEAKNQQPSIIFFDEIDGLAPVRS 515

Query:   143 SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202
             S+       I  TL+ L+   DG D  G+V +I ATNRPD +DPAL RPGR DR+   PL
Sbjct:   516 SKQEQIHASIVSTLLALM---DGMDNRGQVIVIGATNRPDAIDPALRRPGRFDREFYFPL 572

Query:   203 PNEQSRMEILKIH 215
             P+  SR EILKIH
Sbjct:   573 PDLGSRKEILKIH 585


>POMBASE|SPBP22H7.05c [details] [associations]
            symbol:abo2 "ATPase with bromodomain protein
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
            "nuclear chromatin" evidence=ISM] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006338
            "chromatin remodeling" evidence=ISM] [GO:0016887 "ATPase activity"
            evidence=ISM] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 PomBase:SPBP22H7.05c GO:GO:0005524 EMBL:CU329671
            GO:GO:0045944 GO:GO:0016887 GO:GO:0006338 GO:GO:0000790 HSSP:Q01853
            eggNOG:COG0464 EMBL:AB004535 RefSeq:NP_595602.1
            ProteinModelPortal:Q9C0W2 EnsemblFungi:SPBP22H7.05c.1
            GeneID:2541287 KEGG:spo:SPBP22H7.05c OrthoDB:EOG4N07QZ
            NextBio:20802398 Uniprot:Q9C0W2
        Length = 1201

 Score = 432 (157.1 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 91/194 (46%), Positives = 128/194 (65%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             N+ ++++GGL D I +L+E + LPL+ PE+FL + I PP+GVL +GPPGTGKTL+AR +A
Sbjct:   368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427

Query:    88 SNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142
             +N      K+       S  + K++GE+ R +R +F  AR  QP IIF DEID +   R 
Sbjct:   428 ANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRS 487

Query:   143 SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202
             S+       I  TL+ L+   DG D  G+V +I ATNRP+ LDPAL RPGR DR+   PL
Sbjct:   488 SKQEQTHSSIVSTLLALM---DGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPL 544

Query:   203 PNEQSRMEILKIHA 216
             PN+Q+RM+IL+I++
Sbjct:   545 PNKQARMKILEINS 558


>TAIR|locus:2138146 [details] [associations]
            symbol:FtsHi1 "FTSH inactive protease 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008237 "metallopeptidase
            activity" evidence=ISS] [GO:0009658 "chloroplast organization"
            evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
            [GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0007020 "microtubule nucleation"
            evidence=RCA] [GO:0010020 "chloroplast fission" evidence=IMP]
            [GO:0009536 "plastid" evidence=IDA] InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 Pfam:PF01434
            SMART:SM00382 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0051301 GO:GO:0006508 GO:GO:0009941 GO:GO:0004222
            eggNOG:COG0465 GO:GO:0017111 GO:GO:0010020 EMBL:AC002343
            EMBL:AL078468 EMBL:AL161560 HSSP:Q9LCZ4 IPI:IPI00537043 PIR:T08913
            RefSeq:NP_567691.1 UniGene:At.3392 ProteinModelPortal:O22993
            SMR:O22993 PaxDb:O22993 PRIDE:O22993 EnsemblPlants:AT4G23940.1
            GeneID:828494 KEGG:ath:AT4G23940 TAIR:At4g23940
            HOGENOM:HOG000029491 InParanoid:O22993 OMA:QMAGSEF PhylomeDB:O22993
            ProtClustDB:CLSN2689578 ArrayExpress:O22993 Genevestigator:O22993
            Uniprot:O22993
        Length = 946

 Score = 429 (156.1 bits), Expect = 2.8e-39, P = 2.8e-39
 Identities = 94/207 (45%), Positives = 136/207 (65%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V ++ V G+ + + EL+E ++  L NP+LF ++GIKPP GVLL GPPG GKTL+A+AIA 
Sbjct:   427 VKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 485

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR---FSEG 145
                  F ++  S  ++  +G  +  IR++F  A+ ++P +IF+DEIDA+  RR   F E 
Sbjct:   486 EAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKEN 545

Query:   146 T-----SADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALLRPGRLDRKIE 199
             +     +A +E + TL +LL +LDGFD  GK V  + ATNR D+LDPALLRPGR DRKI 
Sbjct:   546 SDQLYNAATQERETTLNQLLIELDGFDT-GKGVIFLGATNRRDLLDPALLRPGRFDRKIR 604

Query:   200 IPLPNEQSRMEILKIHAAGIAKHGEID 226
             +  PN + R++ILKIHA+ +     +D
Sbjct:   605 VRPPNAKGRLDILKIHASKVKMSDSVD 631


>GENEDB_PFALCIPARUM|PFF0940c [details] [associations]
            symbol:PFF0940c "cell division cycle protein 48
            homologue, putative" species:5833 "Plasmodium falciparum"
            [GO:0051726 "regulation of cell cycle" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
            ProteinModelPortal:C6KT34 PRIDE:C6KT34
            EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
            EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
            Uniprot:C6KT34
        Length = 828

 Score = 427 (155.4 bits), Expect = 3.1e-39, P = 3.1e-39
 Identities = 90/216 (41%), Positives = 133/216 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E DP+  +   E    + Y  +GG   Q+ ++RE IELPL +P LF  +G+KPP+GVLLY
Sbjct:   189 EGDPIKRDD-EEKLDEIGYDDIGGCKKQLAQIREMIELPLRHPGLFKTLGVKPPRGVLLY 247

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPG+GKT +ARA+A+   A F  +    ++ K  GE+   +R  F  A  + P IIF+D
Sbjct:   248 GPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAIIFID 307

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EID+I  +R  E T+ + E +R + +LL  +DG    G+V +I ATNR + +DPAL R G
Sbjct:   308 EIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGIKSRGQVVVIAATNRQNSIDPALRRFG 364

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 228
             R DR+I+I +P++  R EIL+IH   +    ++  E
Sbjct:   365 RFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVKLE 400

 Score = 407 (148.3 bits), Expect = 4.5e-37, P = 4.5e-37
 Identities = 86/204 (42%), Positives = 125/204 (61%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV +  +GGL +    LRE I  P+ +P+ F + G+ P +GVL YGPPG GKTLLA+A+A
Sbjct:   476 NVKWDDIGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLLAKAVA 535

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             S   ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+IG +R S    
Sbjct:   536 SECSANFVSIKGPELLTMWFGESEANVREVFDKARAAAPCVLFFDELDSIGTQRGSSLGD 595

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
                   R + +LL ++DG      +  I ATNRP++LD ALLRPGRLD+ I IPLP+  +
Sbjct:   596 GSGAGDRVMNQLLTEIDGVGPKKNLFFIGATNRPELLDEALLRPGRLDQLIYIPLPDLGA 655

Query:   208 RMEILK--IHAAGIAKHGEIDYEA 229
             R+ IL   +    +A++  ID+ A
Sbjct:   656 RISILTAILRKCPVAENVPIDFLA 679


>UNIPROTKB|C6KT34 [details] [associations]
            symbol:PFF0940c "Cell division cycle protein 48 homologue,
            putative" species:36329 "Plasmodium falciparum 3D7" [GO:0051726
            "regulation of cell cycle" evidence=ISS] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005938
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            Pfam:PF02359 GO:GO:0005524 GO:GO:0051301 GO:GO:0051726
            GO:GO:0017111 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            HOGENOM:HOG000223224 KO:K13525 InterPro:IPR004201
            PANTHER:PTHR23077:SF18 Pfam:PF02933 SMART:SM01072 SMART:SM01073
            TIGRFAMs:TIGR01243 OMA:AYRPIHK EMBL:AL844505 RefSeq:XP_966179.2
            ProteinModelPortal:C6KT34 PRIDE:C6KT34
            EnsemblProtists:PFF0940c:mRNA GeneID:3885942 KEGG:pfa:PFF0940c
            EuPathDB:PlasmoDB:PF3D7_0619400 ProtClustDB:CLSZ2429060
            Uniprot:C6KT34
        Length = 828

 Score = 427 (155.4 bits), Expect = 3.1e-39, P = 3.1e-39
 Identities = 90/216 (41%), Positives = 133/216 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E DP+  +   E    + Y  +GG   Q+ ++RE IELPL +P LF  +G+KPP+GVLLY
Sbjct:   189 EGDPIKRDD-EEKLDEIGYDDIGGCKKQLAQIREMIELPLRHPGLFKTLGVKPPRGVLLY 247

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPG+GKT +ARA+A+   A F  +    ++ K  GE+   +R  F  A  + P IIF+D
Sbjct:   248 GPPGSGKTCIARAVANETGAFFFLINGPEVMSKMAGEAEANLRRAFEEAEKNSPAIIFID 307

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
             EID+I  +R  E T+ + E +R + +LL  +DG    G+V +I ATNR + +DPAL R G
Sbjct:   308 EIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGIKSRGQVVVIAATNRQNSIDPALRRFG 364

Query:   193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 228
             R DR+I+I +P++  R EIL+IH   +    ++  E
Sbjct:   365 RFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVKLE 400

 Score = 407 (148.3 bits), Expect = 4.5e-37, P = 4.5e-37
 Identities = 86/204 (42%), Positives = 125/204 (61%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV +  +GGL +    LRE I  P+ +P+ F + G+ P +GVL YGPPG GKTLLA+A+A
Sbjct:   476 NVKWDDIGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVLFYGPPGCGKTLLAKAVA 535

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             S   ANF+ +    ++  + GES   +RE+F  AR   PC++F DE+D+IG +R S    
Sbjct:   536 SECSANFVSIKGPELLTMWFGESEANVREVFDKARAAAPCVLFFDELDSIGTQRGSSLGD 595

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
                   R + +LL ++DG      +  I ATNRP++LD ALLRPGRLD+ I IPLP+  +
Sbjct:   596 GSGAGDRVMNQLLTEIDGVGPKKNLFFIGATNRPELLDEALLRPGRLDQLIYIPLPDLGA 655

Query:   208 RMEILK--IHAAGIAKHGEIDYEA 229
             R+ IL   +    +A++  ID+ A
Sbjct:   656 RISILTAILRKCPVAENVPIDFLA 679


>MGI|MGI:1918632 [details] [associations]
            symbol:Pex1 "peroxisomal biogenesis factor 1" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=ISO] [GO:0005777 "peroxisome" evidence=ISO;IDA]
            [GO:0005778 "peroxisomal membrane" evidence=ISO] [GO:0005829
            "cytosol" evidence=ISO] [GO:0006625 "protein targeting to
            peroxisome" evidence=ISO] [GO:0006810 "transport" evidence=IEA]
            [GO:0007031 "peroxisome organization" evidence=ISO] [GO:0008022
            "protein C-terminus binding" evidence=ISO] [GO:0008289 "lipid
            binding" evidence=IEA] [GO:0015031 "protein transport"
            evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016558
            "protein import into peroxisome matrix" evidence=ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0032403
            "protein complex binding" evidence=ISO] [GO:0042623 "ATPase
            activity, coupled" evidence=ISO] [GO:0060152 "microtubule-based
            peroxisome localization" evidence=ISO] InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR015342
            InterPro:IPR025653 Pfam:PF00004 Pfam:PF09262 PROSITE:PS00674
            SMART:SM00382 MGI:MGI:1918632 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0005777 GO:GO:0005778 GO:GO:0008289
            GO:GO:0016558 eggNOG:COG0464 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 GO:GO:0042623 GO:GO:0060152 KO:K13338
            PANTHER:PTHR23077:SF12 CTD:5189 HOVERGEN:HBG008169 OMA:HSWEKEK
            InterPro:IPR015343 Pfam:PF09263 EMBL:BC090845 EMBL:AK017309
            EMBL:AK149599 IPI:IPI00136789 IPI:IPI00653755 RefSeq:NP_082053.1
            UniGene:Mm.379196 PDB:1WLF PDBsum:1WLF ProteinModelPortal:Q5BL07
            SMR:Q5BL07 STRING:Q5BL07 PhosphoSite:Q5BL07 PaxDb:Q5BL07
            PRIDE:Q5BL07 Ensembl:ENSMUST00000006061 Ensembl:ENSMUST00000121291
            GeneID:71382 KEGG:mmu:71382 UCSC:uc008whf.1
            GeneTree:ENSGT00550000075032 HOGENOM:HOG000252959 InParanoid:Q5BL07
            OrthoDB:EOG4JM7P2 EvolutionaryTrace:Q5BL07 NextBio:333669
            Bgee:Q5BL07 CleanEx:MM_PEX1 Genevestigator:Q5BL07 Uniprot:Q5BL07
        Length = 1284

 Score = 431 (156.8 bits), Expect = 3.3e-39, P = 3.3e-39
 Identities = 91/236 (38%), Positives = 145/236 (61%)

Query:     1 MTTLTIMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL 59
             +TT    +AL   +   + N+ LH+ P ++ +  +GGL +  + L ++I+LP   PELF 
Sbjct:   810 LTTSDFQKALRGFLPASLRNVNLHK-PRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFA 868

Query:    60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFG 119
              + I+   G+LLYGPPGTGKTLLA  +A     NF+ +    ++ KYIG S + +R++F 
Sbjct:   869 NLPIRQRTGILLYGPPGTGKTLLAGVVARESGMNFISIKGPELLSKYIGASEQAVRDVFI 928

Query:   120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179
              A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT+
Sbjct:   929 RAQAAKPCILFFDEFESIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAATS 985

Query:   180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +A   ++D + V  + +
Sbjct:   986 RPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTD 1041


>TIGR_CMR|BA_0064 [details] [associations]
            symbol:BA_0064 "cell division protein FtsH" species:198094
            "Bacillus anthracis str. Ames" [GO:0000910 "cytokinesis"
            evidence=ISS] [GO:0004222 "metalloendopeptidase activity"
            evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS] [GO:0016887
            "ATPase activity" evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005936 InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434
            Pfam:PF06480 PROSITE:PS00674 SMART:SM00382 GO:GO:0016021
            GO:GO:0005886 GO:GO:0005524 GO:GO:0051301 GO:GO:0046872
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0030163 HOGENOM:HOG000217277 TIGRFAMs:TIGR01241 KO:K03798
            ProtClustDB:CLSK886567 HSSP:Q9LCZ4 OMA:QINMEEV RefSeq:NP_842633.1
            RefSeq:YP_016667.1 RefSeq:YP_026351.1 ProteinModelPortal:Q81VX5
            SMR:Q81VX5 IntAct:Q81VX5 DNASU:1086600
            EnsemblBacteria:EBBACT00000009752 EnsemblBacteria:EBBACT00000016661
            EnsemblBacteria:EBBACT00000022411 GeneID:1086600 GeneID:2819677
            GeneID:2851579 KEGG:ban:BA_0064 KEGG:bar:GBAA_0064 KEGG:bat:BAS0064
            BioCyc:BANT260799:GJAJ-73-MONOMER BioCyc:BANT261594:GJ7F-75-MONOMER
            Uniprot:Q81VX5
        Length = 633

 Score = 421 (153.3 bits), Expect = 3.3e-39, P = 3.3e-39
 Identities = 87/210 (41%), Positives = 128/210 (60%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             + +++   V +  V G  ++ +EL E +E  L +P  F  VG + PKGVLL GPPGTGKT
Sbjct:   151 LYNDEKKKVRFRDVAGADEEKQELVEVVEF-LKDPRKFAEVGARIPKGVLLVGPPGTGKT 209

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLARA+A      F  +  S  ++ ++G  A  +R++F  A+ + PCIIF+DEIDA+G +
Sbjct:   210 LLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQ 269

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL +LL ++DGF     + +I ATNRPD+LDPALLRPGR DR+I +
Sbjct:   270 RGAGLGGGHDEREQTLNQLLVEMDGFGANEGIIIIAATNRPDILDPALLRPGRFDRQITV 329

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
               P+   R  +LK+HA        I+  A+
Sbjct:   330 DRPDVNGREAVLKVHARNKPLDENINLRAI 359


>UNIPROTKB|E9PE75 [details] [associations]
            symbol:PEX1 "Peroxisome biogenesis factor 1" species:9606
            "Homo sapiens" [GO:0005778 "peroxisomal membrane" evidence=IEA]
            [GO:0006625 "protein targeting to peroxisome" evidence=IEA]
            [GO:0042623 "ATPase activity, coupled" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR025653 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
            GO:GO:0005778 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            EMBL:AC007566 GO:GO:0042623 GO:GO:0006625 PANTHER:PTHR23077:SF12
            HGNC:HGNC:8850 InterPro:IPR015343 Pfam:PF09263 IPI:IPI00924762
            ProteinModelPortal:E9PE75 SMR:E9PE75 Ensembl:ENST00000438045
            UCSC:uc011khs.2 ArrayExpress:E9PE75 Bgee:E9PE75 Uniprot:E9PE75
        Length = 961

 Score = 428 (155.7 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 92/236 (38%), Positives = 145/236 (61%)

Query:     1 MTTLTIMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL 59
             +TTL   +AL   +   + ++ LH+ P ++ +  +GGL +  + L ++I+LP   PELF 
Sbjct:   487 LTTLDFQKALRGFLPASLRSVNLHK-PRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFA 545

Query:    60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFG 119
              + I+   G+LLYGPPGTGKTLLA  IA     NF+ V    ++ KYIG S + +R++F 
Sbjct:   546 NLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFI 605

Query:   120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179
              A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT+
Sbjct:   606 RAQAAKPCILFFDEFESIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAATS 662

Query:   180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +    ++D + V  + +
Sbjct:   663 RPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTD 718

 Score = 115 (45.5 bits), Expect = 0.00099, P = 0.00099
 Identities = 51/197 (25%), Positives = 94/197 (47%)

Query:    32 SAVGGLSD----QIRELRESI-ELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAI 86
             S++GG++      +  +  S+   PL    + L  G++    +LL G  G+GK+ LA+AI
Sbjct:   232 SSLGGVNSLGVSSLEHITHSLLGRPLSRQLMSLVAGLRNG-ALLLTGGKGSGKSTLAKAI 290

Query:    87 ASN----IDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR-R 141
                    +DA+  +V   A+  K +    + +   F  A   QP ++ +D++D I G   
Sbjct:   291 CKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEAVWMQPSVVLLDDLDLIAGLPA 350

Query:   142 FSEGTSADREIQ-RTLMELLNQL-DGFDQLGKVKMIMATNRPDV-LDPALLRP-G-RLDR 196
               E   +   +Q + L   LN +   F  +G +  ++AT++    L P L+   G  + +
Sbjct:   351 VPEHEHSPDAVQSQRLAHALNDMIKEFISMGSLVALIATSQSQQSLHPLLVSAQGVHIFQ 410

Query:   197 KIE-IPLPNEQSRMEIL 212
              ++ I  PN++ R EIL
Sbjct:   411 CVQHIQPPNQEQRCEIL 427


>RGD|1559939 [details] [associations]
            symbol:Pex1 "peroxisomal biogenesis factor 1" species:10116
            "Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005524 "ATP binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
            evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005777
            "peroxisome" evidence=ISO] [GO:0005778 "peroxisomal membrane"
            evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IEA;ISO]
            [GO:0006625 "protein targeting to peroxisome" evidence=ISO]
            [GO:0007031 "peroxisome organization" evidence=ISO] [GO:0008022
            "protein C-terminus binding" evidence=IEA;ISO] [GO:0008150
            "biological_process" evidence=ND] [GO:0016558 "protein import into
            peroxisome matrix" evidence=IEA;ISO] [GO:0032403 "protein complex
            binding" evidence=IEA;ISO] [GO:0042623 "ATPase activity, coupled"
            evidence=IEA;ISO] [GO:0043231 "intracellular membrane-bounded
            organelle" evidence=ISO] [GO:0060152 "microtubule-based peroxisome
            localization" evidence=IEA;ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR015342 InterPro:IPR025653
            Pfam:PF00004 Pfam:PF09262 PROSITE:PS00674 SMART:SM00382 RGD:1559939
            GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0005778
            GO:GO:0016558 Gene3D:2.40.40.20 InterPro:IPR009010 SUPFAM:SSF50692
            GO:GO:0042623 GO:GO:0060152 KO:K13338 PANTHER:PTHR23077:SF12
            CTD:5189 InterPro:IPR015343 Pfam:PF09263
            GeneTree:ENSGT00550000075032 OrthoDB:EOG4JM7P2 EMBL:CH474013
            IPI:IPI00777820 RefSeq:NP_001102690.1 UniGene:Rn.162727
            Ensembl:ENSRNOT00000038136 GeneID:500006 KEGG:rno:500006
            UCSC:RGD:1559939 NextBio:704745 Uniprot:D3ZZB2
        Length = 1283

 Score = 430 (156.4 bits), Expect = 4.2e-39, P = 4.2e-39
 Identities = 91/236 (38%), Positives = 144/236 (61%)

Query:     1 MTTLTIMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL 59
             +TT    +AL   +   + N+ LH+ P ++ +  +GGL +  + L ++I+LP   PELF 
Sbjct:   809 LTTADFQKALRGFLPASLRNVNLHK-PRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFA 867

Query:    60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFG 119
              + I+   G+LLYGPPGTGKTLLA  +A     NF+ +    ++ KYIG S + +R++F 
Sbjct:   868 NLPIRQRTGILLYGPPGTGKTLLAGVVARESGMNFISIQGPELLSKYIGASEQAVRDVFI 927

Query:   120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179
              A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT+
Sbjct:   928 RAQAAKPCILFFDEFESIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAATS 984

Query:   180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +    ++D + V  + E
Sbjct:   985 RPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLPLADDVDLQHVASVTE 1040

 Score = 127 (49.8 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 61/240 (25%), Positives = 109/240 (45%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             E+D ++ ++     G VS  +V  +      L   +  PL    + L  G++   G LL 
Sbjct:   543 EIDILLPSLTLSSLGGVSSLSVSAMEHITHSL---LGRPLSRQLMALVAGLR--NGALLI 597

Query:    73 -GPPGTGKTLLARAIASN----IDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPC 127
              G  G+GK+ LA+AI       +DA+   V   A+  K +    + +   F  A   QP 
Sbjct:   598 TGGKGSGKSTLAKAICKEAHDALDAHVEMVDCKALRGKRLESIQKALEVAFSEAAWRQPS 657

Query:   128 IIFMDEIDAIGGRRFS---EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR-PDV 183
             +I +D++D I G   +   E +    + QR    L N +  F  +G +  ++AT++    
Sbjct:   658 VILLDDLDLIAGLPSTPEHEHSPEAVQSQRLAHALNNMIKEFVSMGSLVALIATSQLQHS 717

Query:   184 LDPALLRPGRLD--RKIE-IPLPNEQSRMEILKI---HAAG--IAKHGEIDYEAVVKLAE 235
             L P+L+    +   + I+ I  P+++ R EIL     +  G  I+K  ++D + + K  E
Sbjct:   718 LHPSLVSAQGVHTFQCIQHIQPPDQEQRCEILHSVVKNKLGCDISKSPDLDLKCIAKETE 777


>DICTYBASE|DDB_G0293388 [details] [associations]
            symbol:DDB_G0293388 "ATP-dependent metalloprotease"
            species:44689 "Dictyostelium discoideum" [GO:0030163 "protein
            catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016020
            "membrane" evidence=IEA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0004222
            "metalloendopeptidase activity" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008237 "metallopeptidase
            activity" evidence=IEA] [GO:0008233 "peptidase activity"
            evidence=IEA] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            Pfam:PF00004 Pfam:PF01434 PROSITE:PS00674 SMART:SM00382
            dictyBase:DDB_G0293388 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 GO:GO:0017111 TIGRFAMs:TIGR01241 EMBL:AAFI02000204
            RefSeq:XP_629167.2 ProteinModelPortal:Q54BW7 STRING:Q54BW7
            MEROPS:M41.A16 EnsemblProtists:DDB0304811 GeneID:8629188
            KEGG:ddi:DDB_G0293388 InParanoid:Q54BW7 OMA:ICLAGRA Uniprot:Q54BW7
        Length = 767

 Score = 424 (154.3 bits), Expect = 5.0e-39, P = 5.0e-39
 Identities = 93/215 (43%), Positives = 134/215 (62%)

Query:    19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTG 78
             Y+  ++ P   S+  V G+ +   EL E ++  L++P  +  +G K PKGVLL G PGTG
Sbjct:   289 YDETNQTP--TSFDDVKGIQEVKEELEEIVDY-LLHPTKYNSIGAKLPKGVLLSGEPGTG 345

Query:    79 KTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG 138
             KTLLARAIA     +FL    S+  +KY+G  +R +RE+F  AR+ QPCIIF+DEIDA+G
Sbjct:   346 KTLLARAIAGEAGVSFLYTTGSSFDEKYVGVGSRRVRELFNAAREKQPCIIFIDEIDAVG 405

Query:   139 GRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKI 198
               R    T+   E   TL++LL ++DGF+   ++ +I ATN P+ LDPALLRPGR DR I
Sbjct:   406 KSR---NTAHHNE---TLLQLLTEMDGFEGNSQIMIIGATNAPNSLDPALLRPGRFDRHI 459

Query:   199 EIPLPNEQSRMEILKIHAAGIAKHG-EIDYEAVVK 232
              +P+P+ + R EI+  H     KH  E+  + + +
Sbjct:   460 SVPIPDMKGRSEIID-HYLKKVKHTVEVKADTIAR 493


>TIGR_CMR|CJE_1259 [details] [associations]
            symbol:CJE_1259 "cell division protein FtsH"
            species:195099 "Campylobacter jejuni RM1221" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
            HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0051301 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0030163
            eggNOG:COG0465 TIGRFAMs:TIGR01241 HOGENOM:HOG000217276 KO:K03798
            OMA:RARASMP RefSeq:YP_179247.1 ProteinModelPortal:Q5HTY8 SMR:Q5HTY8
            STRING:Q5HTY8 GeneID:3231766 KEGG:cjr:CJE1259 PATRIC:20044314
            ProtClustDB:CLSK872348 BioCyc:CJEJ195099:GJC0-1285-MONOMER
            Uniprot:Q5HTY8
        Length = 645

 Score = 420 (152.9 bits), Expect = 5.2e-39, P = 5.2e-39
 Identities = 85/215 (39%), Positives = 136/215 (63%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             +++ +   V +S V G+ +   E++E ++  L  PE ++++G K PKG+LL GPPGTGKT
Sbjct:   167 LVNSEKPKVKFSDVAGVEEAKEEVKEIVDF-LKYPERYIKLGAKIPKGLLLVGPPGTGKT 225

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLA+A+A   D  F  V  S+ I+ ++G  A  +R++F  A+   P I+F+DEIDAIG  
Sbjct:   226 LLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFIDEIDAIGKS 285

Query:   141 RFSEGT-SADREIQRTLMELLNQLDGFD-QLGKVKMIMATNRPDVLDPALLRPGRLDRKI 198
             R + G    + E ++TL +LL ++DGF  +   V ++ ATNRP+VLD ALLRPGR DR++
Sbjct:   286 RAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAALLRPGRFDRQV 345

Query:   199 EIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233
              +  P+ + R +ILK+H   +    ++  E + +L
Sbjct:   346 LVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARL 380


>UNIPROTKB|Q9KU86 [details] [associations]
            symbol:ftsH "ATP-dependent zinc metalloprotease FtsH"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0000910 "cytokinesis" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
            GO:GO:0006200 GO:GO:0006508 GO:GO:0004222 GO:GO:0016887
            GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241 HSSP:P28691
            KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299 RefSeq:NP_230286.1
            ProteinModelPortal:Q9KU86 SMR:Q9KU86 DNASU:2615425 GeneID:2615425
            KEGG:vch:VC0637 PATRIC:20080383 ProtClustDB:CLSK874054
            Uniprot:Q9KU86
        Length = 651

 Score = 420 (152.9 bits), Expect = 5.6e-39, P = 5.6e-39
 Identities = 84/212 (39%), Positives = 132/212 (62%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             M+ ED    ++S V G  +   +++E ++  L +P  F ++G K P GVL+ GPPGTGKT
Sbjct:   145 MMSEDQIKTTFSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKT 203

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLA+AIA      F  +  S  ++ ++G  A  +R+MF  A+   PCIIF+DEIDA+G +
Sbjct:   204 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQ 263

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL ++L ++DGF+    + +I ATNRPDVLDPALLRPGR DR++ +
Sbjct:   264 RGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 323

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
              LP+ + R +ILK+H   +    +++   + +
Sbjct:   324 GLPDVRGREQILKVHMRKVPLANDVEPSLIAR 355


>TIGR_CMR|VC_0637 [details] [associations]
            symbol:VC_0637 "cell division protein FtsH" species:686
            "Vibrio cholerae O1 biovar El Tor" [GO:0000910 "cytokinesis"
            evidence=ISS] HAMAP:MF_01458 InterPro:IPR000642 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR005936
            InterPro:IPR011546 Pfam:PF00004 Pfam:PF01434 Pfam:PF06480
            PROSITE:PS00674 SMART:SM00382 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
            GO:GO:0008270 GO:GO:0006200 GO:GO:0006508 GO:GO:0004222
            GO:GO:0016887 GO:GO:0000910 GO:GO:0030163 TIGRFAMs:TIGR01241
            HSSP:P28691 KO:K03798 MEROPS:M41.001 OMA:TGKADDE PIR:E82299
            RefSeq:NP_230286.1 ProteinModelPortal:Q9KU86 SMR:Q9KU86
            DNASU:2615425 GeneID:2615425 KEGG:vch:VC0637 PATRIC:20080383
            ProtClustDB:CLSK874054 Uniprot:Q9KU86
        Length = 651

 Score = 420 (152.9 bits), Expect = 5.6e-39, P = 5.6e-39
 Identities = 84/212 (39%), Positives = 132/212 (62%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             M+ ED    ++S V G  +   +++E ++  L +P  F ++G K P GVL+ GPPGTGKT
Sbjct:   145 MMSEDQIKTTFSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKT 203

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLA+AIA      F  +  S  ++ ++G  A  +R+MF  A+   PCIIF+DEIDA+G +
Sbjct:   204 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQ 263

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R +       E ++TL ++L ++DGF+    + +I ATNRPDVLDPALLRPGR DR++ +
Sbjct:   264 RGAGVGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 323

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
              LP+ + R +ILK+H   +    +++   + +
Sbjct:   324 GLPDVRGREQILKVHMRKVPLANDVEPSLIAR 355


>TIGR_CMR|NSE_0423 [details] [associations]
            symbol:NSE_0423 "ATP-dependent metalloprotease FtsH"
            species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000910
            "cytokinesis" evidence=ISS] [GO:0004222 "metalloendopeptidase
            activity" evidence=ISS] [GO:0006508 "proteolysis" evidence=ISS]
            [GO:0016887 "ATPase activity" evidence=ISS] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
            GO:GO:0046872 GO:GO:0008270 GO:GO:0006200 GO:GO:0006508
            GO:GO:0004222 GO:GO:0016887 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 EMBL:CP000237 GenomeReviews:CP000237_GR
            HOGENOM:HOG000217276 KO:K03798 MEROPS:M41.001 RefSeq:YP_506309.1
            ProteinModelPortal:Q2GDY7 SMR:Q2GDY7 STRING:Q2GDY7 GeneID:3931660
            KEGG:nse:NSE_0423 PATRIC:22680905 OMA:ENIESLH
            ProtClustDB:CLSK749654 BioCyc:NSEN222891:GHFU-445-MONOMER
            Uniprot:Q2GDY7
        Length = 636

 Score = 419 (152.6 bits), Expect = 6.0e-39, P = 6.0e-39
 Identities = 87/212 (41%), Positives = 128/212 (60%)

Query:    21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
             +L +    V++  V G+ +   EL E +E  L  P+ F ++G K PKG LL GPPGTGKT
Sbjct:   146 LLSDRSNKVTFHDVAGIDEAKEELAEIVEF-LREPKKFQKLGGKIPKGCLLIGPPGTGKT 204

Query:    81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
             LLA+AIA      F  +  S  ++ ++G  A  +R+MF   + + PC+IF+DEIDA+G  
Sbjct:   205 LLAKAIAGEAKVPFFSISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVGRH 264

Query:   141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
             R       + E ++TL +LL ++DGF+    V +I ATNRPDVLDPALLRPGR DR+I I
Sbjct:   265 RGVGFGGGNDEREQTLNQLLVEMDGFEANEGVIIIAATNRPDVLDPALLRPGRFDRQITI 324

Query:   201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
              +P+   R +IL++H   I     ++   + +
Sbjct:   325 SIPDIAGRQKILEVHLKKIPTAPNVEVSIIAR 356


>DICTYBASE|DDB_G0284249 [details] [associations]
            symbol:DDB_G0284249 "peptidase M41, FtsH
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0030163 "protein catabolic process" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0004222 "metalloendopeptidase activity"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006461 "protein complex assembly" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0044351 "macropinocytosis" evidence=RCA] HAMAP:MF_01458
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 dictyBase:DDB_G0284249 GO:GO:0016021 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005524 GO:GO:0006461 GO:GO:0046872
            GO:GO:0008270 GO:GO:0006508 GO:GO:0004222 GO:GO:0030163
            eggNOG:COG0465 KO:K08956 GO:GO:0017111 TIGRFAMs:TIGR01241
            EMBL:AAFI02000064 RefSeq:XP_638674.1 ProteinModelPortal:Q54PX1
            SMR:Q54PX1 MEROPS:M41.A17 EnsemblProtists:DDB0229917 GeneID:8624503
            KEGG:ddi:DDB_G0284249 InParanoid:Q54PX1 OMA:VSIYGMN
            ProtClustDB:CLSZ2846729 Uniprot:Q54PX1
        Length = 764

 Score = 423 (154.0 bits), Expect = 6.3e-39, P = 6.3e-39
 Identities = 90/216 (41%), Positives = 128/216 (59%)

Query:    20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 79
             N   +    V +S V GL +   E+ E +   L NP+ F  +G K P+G +L GPPGTGK
Sbjct:   290 NKFEKSTSTVKFSDVAGLGEAKVEIEEFVNF-LKNPKKFHDIGAKIPRGAILVGPPGTGK 348

Query:    80 TLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139
             TL+A+A A   +  F     S  ++ ++G     +R++F  AR + PCI+F+DEIDA+G 
Sbjct:   349 TLIAKATAGEANVPFYSTSGSDFVEMFVGVGPSRVRDLFEQARKNAPCIVFIDEIDAVGR 408

Query:   140 RRFSEGTSADR-EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKI 198
              R   G S    E + TL +LL ++DGF  L  V ++ ATNRPD+LD ALLRPGR DR+I
Sbjct:   409 ARGKGGFSGSNDERENTLNQLLVEMDGFKPLKNVVVLAATNRPDILDKALLRPGRFDRQI 468

Query:   199 EIPLPNEQSRMEILKIHAAGIAKHGEIDY-EAVVKL 233
              I  P+ +SR EI ++H A +     I+Y E + KL
Sbjct:   469 TIDNPDLKSREEIFRVHLAALLLDKSINYAERLSKL 504


>GENEDB_PFALCIPARUM|PF07_0047 [details] [associations]
            symbol:PF07_0047 "cell division cycle ATPase,
            putative" species:5833 "Plasmodium falciparum" [GO:0016887 "ATPase
            activity" evidence=ISS] [GO:0051726 "regulation of cell cycle"
            evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674
            SMART:SM00382 InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524
            GO:GO:0016887 GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 PANTHER:PTHR23077:SF18
            SMART:SM01073 EMBL:AL844506 EMBL:M96757 RefSeq:XP_001349023.1
            ProteinModelPortal:P46468 IntAct:P46468 MINT:MINT-1593477
            PRIDE:P46468 EnsemblProtists:PF07_0047:mRNA GeneID:2655095
            KEGG:pfa:PF07_0047 EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 428 (155.7 bits), Expect = 6.3e-39, P = 6.3e-39
 Identities = 85/189 (44%), Positives = 127/189 (67%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E+  +++Y  +GG+  Q+ ++RE IELPL  PE+F+ +GI  PKGVL++G PGTGKT +A
Sbjct:   519 ENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIA 578

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143
             +AIA+  +A    +    I+ K+IGES + +R++F  A +  PCIIF+DEID+I  +R  
Sbjct:   579 KAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSK 638

Query:   144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
                  ++   R + +LL  +DG  +   V ++ ATNRP+ +DPAL R GR DR+IEIP+P
Sbjct:   639 SNNELEK---RVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVP 695

Query:   204 NEQSRMEIL 212
             +EQ R EIL
Sbjct:   696 DEQGRYEIL 704

 Score = 389 (142.0 bits), Expect = 9.3e-35, P = 9.3e-35
 Identities = 83/207 (40%), Positives = 125/207 (60%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+++ +GG+++   +L+E+I  PL    L+ +      KG+LLYGPPG GKTLLA+AIA+
Sbjct:   931 VTWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIAN 990

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                ANF+ V    ++  + GES   +R++F  AR   PCIIF DEID++   R S  T+ 
Sbjct:   991 ECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSN-TNN 1049

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             D    R + ++L ++DG ++   + +I ATNRPD+LD AL RPGRLD+ I I LP+ +SR
Sbjct:  1050 DAS-DRVINQILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSR 1108

Query:   209 MEILKIHAAGIAKHGEIDYEAVVKLAE 235
               I K        + ++D   + K  E
Sbjct:  1109 YSIFKAILKNTPLNEDVDIHDMAKRTE 1135


>UNIPROTKB|P46468 [details] [associations]
            symbol:PF07_0047 "Putative cell division cycle ATPase"
            species:36329 "Plasmodium falciparum 3D7" [GO:0006200 "ATP
            catabolic process" evidence=ISS] [GO:0016887 "ATPase activity"
            evidence=ISS] [GO:0051726 "regulation of cell cycle" evidence=ISS]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR005938 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            InterPro:IPR003338 Pfam:PF02359 GO:GO:0005524 GO:GO:0016887
            GO:GO:0007049 GO:GO:0051726 Gene3D:2.40.40.20 InterPro:IPR009010
            SUPFAM:SSF50692 PANTHER:PTHR23077:SF18 SMART:SM01073 EMBL:AL844506
            EMBL:M96757 RefSeq:XP_001349023.1 ProteinModelPortal:P46468
            IntAct:P46468 MINT:MINT-1593477 PRIDE:P46468
            EnsemblProtists:PF07_0047:mRNA GeneID:2655095 KEGG:pfa:PF07_0047
            EuPathDB:PlasmoDB:PF3D7_0711000 Uniprot:P46468
        Length = 1229

 Score = 428 (155.7 bits), Expect = 6.3e-39, P = 6.3e-39
 Identities = 85/189 (44%), Positives = 127/189 (67%)

Query:    24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83
             E+  +++Y  +GG+  Q+ ++RE IELPL  PE+F+ +GI  PKGVL++G PGTGKT +A
Sbjct:   519 ENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIA 578

Query:    84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143
             +AIA+  +A    +    I+ K+IGES + +R++F  A +  PCIIF+DEID+I  +R  
Sbjct:   579 KAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSK 638

Query:   144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
                  ++   R + +LL  +DG  +   V ++ ATNRP+ +DPAL R GR DR+IEIP+P
Sbjct:   639 SNNELEK---RVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVP 695

Query:   204 NEQSRMEIL 212
             +EQ R EIL
Sbjct:   696 DEQGRYEIL 704

 Score = 389 (142.0 bits), Expect = 9.3e-35, P = 9.3e-35
 Identities = 83/207 (40%), Positives = 125/207 (60%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+++ +GG+++   +L+E+I  PL    L+ +      KG+LLYGPPG GKTLLA+AIA+
Sbjct:   931 VTWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIAN 990

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                ANF+ V    ++  + GES   +R++F  AR   PCIIF DEID++   R S  T+ 
Sbjct:   991 ECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSN-TNN 1049

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             D    R + ++L ++DG ++   + +I ATNRPD+LD AL RPGRLD+ I I LP+ +SR
Sbjct:  1050 DAS-DRVINQILTEIDGINEKKTIFIIAATNRPDILDKALTRPGRLDKLIYISLPDLKSR 1108

Query:   209 MEILKIHAAGIAKHGEIDYEAVVKLAE 235
               I K        + ++D   + K  E
Sbjct:  1109 YSIFKAILKNTPLNEDVDIHDMAKRTE 1135


>UNIPROTKB|O43933 [details] [associations]
            symbol:PEX1 "Peroxisome biogenesis factor 1" species:9606
            "Homo sapiens" [GO:0016558 "protein import into peroxisome matrix"
            evidence=IMP] [GO:0008022 "protein C-terminus binding"
            evidence=IPI] [GO:0006625 "protein targeting to peroxisome"
            evidence=IMP] [GO:0032403 "protein complex binding" evidence=IDA]
            [GO:0005777 "peroxisome" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0042623 "ATPase activity, coupled" evidence=IMP]
            [GO:0060152 "microtubule-based peroxisome localization"
            evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005778
            "peroxisomal membrane" evidence=IDA] [GO:0005524 "ATP binding"
            evidence=IMP] [GO:0007031 "peroxisome organization" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            InterPro:IPR015342 InterPro:IPR025653 Pfam:PF00004 Pfam:PF09262
            PROSITE:PS00674 SMART:SM00382 GO:GO:0005829 GO:GO:0005524
            GO:GO:0005634 GO:GO:0032403 GO:GO:0005778 EMBL:CH471091
            EMBL:CH236949 GO:GO:0016558 eggNOG:COG0464 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 EMBL:AC007566 GO:GO:0042623
            Orphanet:912 EMBL:AC000064 TCDB:3.A.20.1.1 Orphanet:772 Orphanet:44
            GO:GO:0060152 KO:K13338 PANTHER:PTHR23077:SF12 EMBL:AF030356
            EMBL:AF026086 EMBL:AB008112 EMBL:AB052090 EMBL:AB052091
            EMBL:AB052092 EMBL:AK292955 EMBL:BC035575 IPI:IPI00411291
            RefSeq:NP_000457.1 UniGene:Hs.164682 ProteinModelPortal:O43933
            SMR:O43933 IntAct:O43933 STRING:O43933 PhosphoSite:O43933
            PaxDb:O43933 PRIDE:O43933 DNASU:5189 Ensembl:ENST00000248633
            Ensembl:ENST00000428214 GeneID:5189 KEGG:hsa:5189 UCSC:uc003uly.3
            CTD:5189 GeneCards:GC07M092116 HGNC:HGNC:8850 HPA:HPA020235
            MIM:214100 MIM:601539 MIM:602136 neXtProt:NX_O43933
            PharmGKB:PA33192 HOVERGEN:HBG008169 InParanoid:O43933 OMA:HSWEKEK
            PhylomeDB:O43933 GenomeRNAi:5189 NextBio:20068 ArrayExpress:O43933
            Bgee:O43933 CleanEx:HS_PEX1 Genevestigator:O43933
            GermOnline:ENSG00000127980 InterPro:IPR015343 Pfam:PF09263
            Uniprot:O43933
        Length = 1283

 Score = 428 (155.7 bits), Expect = 6.9e-39, P = 6.9e-39
 Identities = 92/236 (38%), Positives = 145/236 (61%)

Query:     1 MTTLTIMRALPREVDPVVYNM-LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL 59
             +TTL   +AL   +   + ++ LH+ P ++ +  +GGL +  + L ++I+LP   PELF 
Sbjct:   809 LTTLDFQKALRGFLPASLRSVNLHK-PRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFA 867

Query:    60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFG 119
              + I+   G+LLYGPPGTGKTLLA  IA     NF+ V    ++ KYIG S + +R++F 
Sbjct:   868 NLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFI 927

Query:   120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179
              A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT+
Sbjct:   928 RAQAAKPCILFFDEFESIAPRRGHDNTGVT---DRVVNQLLTQLDGVEGLQGVYVLAATS 984

Query:   180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
             RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +    ++D + V  + +
Sbjct:   985 RPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTD 1040


>TAIR|locus:2154568 [details] [associations]
            symbol:ftsh9 "FTSH protease 9" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0008237 "metallopeptidase activity" evidence=ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0010304 "PSII associated
            light-harvesting complex II catabolic process" evidence=RCA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0005524 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006508
            GO:GO:0009941 GO:GO:0004222 GO:GO:0030163 eggNOG:COG0465
            TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535 EMBL:AB016885
            GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798
            ProtClustDB:CLSN2689036 EMBL:AY059856 IPI:IPI00541670
            RefSeq:NP_568892.1 UniGene:At.7754 ProteinModelPortal:Q9FIM2
            SMR:Q9FIM2 STRING:Q9FIM2 MEROPS:M41.A03 PaxDb:Q9FIM2 PRIDE:Q9FIM2
            EnsemblPlants:AT5G58870.1 GeneID:836004 KEGG:ath:AT5G58870
            GeneFarm:2516 TAIR:At5g58870 InParanoid:Q9FIM2 OMA:SSKRGEN
            PhylomeDB:Q9FIM2 Genevestigator:Q9FIM2 Uniprot:Q9FIM2
        Length = 806

 Score = 409 (149.0 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
 Identities = 82/194 (42%), Positives = 122/194 (62%)

Query:    25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLAR 84
             D   ++++ V G+ +   EL E +E  L NP+ ++R+G +PP+GVLL G PGTGKTLLA+
Sbjct:   322 DGETITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAK 380

Query:    85 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE 144
             A+A   D  F+   +S  ++ Y+G  A  +R++F  A+   P IIF+DEIDA+   R  +
Sbjct:   381 AVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGK 440

Query:   145 GTSADR-EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
                    E ++TL +LL ++DGFD    V ++ ATNR DVLDPAL RPGR DR + +  P
Sbjct:   441 FRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESP 500

Query:   204 NEQSRMEILKIHAA 217
             ++  R  ILK+H +
Sbjct:   501 DKVGRESILKVHVS 514

 Score = 38 (18.4 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query:    17 VVYNMLHEDPGNVSYSAVGGL 37
             V+  +LH  P N S S  G L
Sbjct:   286 VLAGLLHRFPVNFSQSTTGQL 306


>ASPGD|ASPL0000044770 [details] [associations]
            symbol:AN10191 species:162425 "Emericella nidulans"
            [GO:0042406 "extrinsic to endoplasmic reticulum membrane"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0042393
            "histone binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0000122
            "negative regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0045944 "positive regulation of
            transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0031936 "negative regulation of chromatin silencing"
            evidence=IEA] InterPro:IPR001487 InterPro:IPR003593
            InterPro:IPR003959 InterPro:IPR003960 Pfam:PF00004 Pfam:PF00439
            PROSITE:PS00674 PROSITE:PS50014 SMART:SM00382 GO:GO:0005524
            EMBL:BN001307 GO:GO:0017111 Gene3D:1.20.920.10 SUPFAM:SSF47370
            EnsemblFungi:CADANIAT00008053 OMA:QPIMDQI Uniprot:C8VM55
        Length = 1631

 Score = 427 (155.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 95/211 (45%), Positives = 129/211 (61%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             + DP+  +M+      V++  VGGL   I +L+E + LPL+ PE+F R  I PP+GVL +
Sbjct:   556 DADPLGVDMI------VNFDNVGGLQGHIDQLKEMVSLPLLYPEIFQRFHIVPPRGVLFH 609

Query:    73 GPPGTGKTLLARAIASNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPC 127
             GPPGTGKTLLARA+A+++ +   KV       +  + K++GE+ R +R +F  AR  QP 
Sbjct:   610 GPPGTGKTLLARALANSVSSEGRKVTFYMRKGADALSKWVGEAERQLRLLFEEARKTQPS 669

Query:   128 IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPA 187
             IIF DEID +   R S+       I  TL+ L+   DG D  G+V +I ATNRPD +DPA
Sbjct:   670 IIFFDEIDGLAPVRSSKQEQIHASIVSTLLALM---DGMDGRGQVIVIGATNRPDSIDPA 726

Query:   188 LLRPGRLDRKIEIPLPNEQSRMEILKIHAAG 218
             L RPGR DR+   PLPN + R  IL IH  G
Sbjct:   727 LRRPGRFDREFYFPLPNTEGRRAILDIHTKG 757


>RGD|1310478 [details] [associations]
            symbol:Spata5 "spermatogenesis associated 5" species:10116
            "Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 InterPro:IPR003338
            RGD:1310478 GO:GO:0005524 GO:GO:0005737 KO:K14575
            GeneTree:ENSGT00700000104502 GO:GO:0017111 Gene3D:2.40.40.20
            InterPro:IPR009010 SUPFAM:SSF50692 EMBL:CH473961 SMART:SM01073
            CTD:166378 OrthoDB:EOG43FGWF EMBL:AC116183 IPI:IPI00373191
            RefSeq:NP_001102019.1 UniGene:Rn.116828 Ensembl:ENSRNOT00000023584
            GeneID:361935 KEGG:rno:361935 UCSC:RGD:1310478 NextBio:678104
            Uniprot:D4A6T1
        Length = 838

 Score = 421 (153.3 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 88/189 (46%), Positives = 128/189 (67%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V+Y  +GGL+ Q++ +RE IELPL  PELF   GI  P+G+LLYGPPGTGKT++ARA+A+
Sbjct:   350 VTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVAN 409

Query:    89 NIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
              + A ++ V++   II K+ GE+   +R++F  A    P IIF+DE+DA+  +R  EG  
Sbjct:   410 EVGA-YVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR--EGAQ 466

Query:   148 ADREIQRTLMELLNQLDGFDQLG---KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN 204
             ++ E +R +  LL  +DG    G   +V ++ ATNRP  LD AL RPGR D++IEI +PN
Sbjct:   467 SEVE-KRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525

Query:   205 EQSRMEILK 213
              Q R++IL+
Sbjct:   526 AQDRLDILQ 534

 Score = 379 (138.5 bits), Expect = 4.9e-34, P = 4.9e-34
 Identities = 76/173 (43%), Positives = 113/173 (65%)

Query:    13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
             ++ P     +  D  NVS+S +GGL +   +L++++E PL +P+ F R+GI+PPKGVLLY
Sbjct:   608 DIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFSRMGIQPPKGVLLY 667

Query:    73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
             GPPG  KT++A+A+A+    NFL +    +++KY+GES R +RE+F  AR   P IIF D
Sbjct:   668 GPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREVFRKARAVAPSIIFFD 727

Query:   133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
             E+DA+   R S  + A     R L +LL ++DG +QL  V ++ ATNRPD +D
Sbjct:   728 ELDALAVERGSS-SGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRID 779


>TAIR|locus:2009235 [details] [associations]
            symbol:FTSH8 "FTSH protease 8" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0004222 "metalloendopeptidase activity" evidence=IEA]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0006508 "proteolysis" evidence=IEA] [GO:0008237
            "metallopeptidase activity" evidence=ISS] [GO:0008270 "zinc ion
            binding" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA;IDA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0016887
            "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0030163
            "protein catabolic process" evidence=IEA] [GO:0004176
            "ATP-dependent peptidase activity" evidence=ISS] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0010304 "PSII associated light-harvesting complex
            II catabolic process" evidence=TAS] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            InterPro:IPR000642 InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 InterPro:IPR005936 InterPro:IPR011546
            Pfam:PF00004 Pfam:PF01434 Pfam:PF06480 PROSITE:PS00674
            SMART:SM00382 GO:GO:0016021 GO:GO:0007275 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
            GO:GO:0006508 GO:GO:0009941 GO:GO:0004222 EMBL:AC007592
            eggNOG:COG0465 TIGRFAMs:TIGR01241 HSSP:Q9WZ49 GO:GO:0009535
            GO:GO:0004176 HOGENOM:HOG000217276 KO:K03798 GO:GO:0010304
            ProtClustDB:CLSN2679937 EMBL:AF419565 EMBL:BT002649 EMBL:BT003813
            EMBL:AY045951 IPI:IPI00539195 RefSeq:NP_563766.3 UniGene:At.17054
            ProteinModelPortal:Q8W585 SMR:Q8W585 STRING:Q8W585 MEROPS:M41.025
            PaxDb:Q8W585 PRIDE:Q8W585 ProMEX:Q8W585 EnsemblPlants:AT1G06430.1
            GeneID:837154 KEGG:ath:AT1G06430 GeneFarm:2474 TAIR:At1g06430
            InParanoid:Q8W585 OMA:NANADEQ PhylomeDB:Q8W585
            Genevestigator:Q8W585 Uniprot:Q8W585
        Length = 685

 Score = 417 (151.9 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 85/211 (40%), Positives = 133/211 (63%)

Query:    29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
             V++  V G+ +  ++  E +E  L  PE F  VG + PKGVLL GPPGTGKTLLA+AIA 
Sbjct:   217 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 275

Query:    89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 148
                  F  +  S  ++ ++G  A  +R++F  A+++ PCI+F+DEIDA+G +R +     
Sbjct:   276 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG 335

Query:   149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208
             + E ++TL +LL ++DGF+    V ++ ATNR D+LD ALLRPGR DR++ + +P+ + R
Sbjct:   336 NDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGR 395

Query:   209 MEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239
              +ILK+H+      G   +E+ V L  ++ R
Sbjct:   396 TDILKVHS------GNKKFESGVSLEVIAMR 420


>UNIPROTKB|E7ERY0 [details] [associations]
            symbol:NVL "Nuclear valosin-containing protein-like"
            species:9606 "Homo sapiens" [GO:0017111 "nucleoside-triphosphatase
            activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
            InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
            Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
            GO:GO:0017111 EMBL:AC092809 HGNC:HGNC:8070 ChiTaRS:NVL
            IPI:IPI00946072 ProteinModelPortal:E7ERY0 SMR:E7ERY0
            Ensembl:ENST00000482491 ArrayExpress:E7ERY0 Bgee:E7ERY0
            Uniprot:E7ERY0
        Length = 580

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 81/186 (43%), Positives = 121/186 (65%)

Query:    28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
             NV+++ +G L D   EL  +I  P+ NP+ F  +G+  P GVLL GPPG GKTLLA+A+A
Sbjct:   301 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 360

Query:    88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
             +    NF+ V    +++ Y+GES R +R++F  A++  PC+IF DE+DA+  RR    T 
Sbjct:   361 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 420

Query:   148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
             A     R + +LL ++DG +   +V ++ ATNRPD++DPA+LRPGRLD+ + + LP    
Sbjct:   421 AS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 477

Query:   208 RMEILK 213
             R+ ILK
Sbjct:   478 RLAILK 483

 Score = 236 (88.1 bits), Expect = 5.6e-19, P = 5.6e-19
 Identities = 53/124 (42%), Positives = 74/124 (59%)

Query:    90 IDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSAD 149
             +D   LKV +  I+    GES + +RE+F  A  + PCIIF+DEIDAI  +R       +
Sbjct:    46 LDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDME 105

Query:   150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM 209
             R I   L+  ++ L+      +V +I ATNRPD LDPAL R GR DR+I + +P+E SR 
Sbjct:   106 RRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRE 165

Query:   210 EILK 213
              IL+
Sbjct:   166 RILQ 169

WARNING:  HSPs involving 506 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.140   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       241   0.00094  113 3  11 22  0.42    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  756
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  147 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.13u 0.11s 21.24t   Elapsed:  00:00:01
  Total cpu time:  21.15u 0.11s 21.26t   Elapsed:  00:00:01
  Start:  Fri May 10 05:01:20 2013   End:  Fri May 10 05:01:21 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with OsRPT4 OsRPT4 OsRPT4 26S proteasome regulatory particle triple-A ATPase subunit4	protein from Oryza sativa Japonica Group	1.4e-119
BLAST match view associations BLAST with AT1G45000 AT1G45000 AT1G45000	protein from Arabidopsis thaliana	2.0e-118
BLAST match view associations BLAST with RPT4A RPT4A RPT4A regulatory particle triple-A ATPase 4A	protein from Arabidopsis thaliana	2.6e-118
BLAST match view associations BLAST with Rpt4 Rpt4 Rpt4 Regulatory particle triple-A ATPase 4	protein from Drosophila melanogaster	1.3e-109
BLAST match view associations BLAST with Rpt4R Rpt4R Rpt4R Regulatory particle triple-A ATPase 4-related	protein from Drosophila melanogaster	1.7e-105
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4	gene from Caenorhabditis elegans	1.7e-105
BLAST match view associations BLAST with rpt-4 rpt-4 rpt-4 Probable 26S protease regulatory subunit 10B	protein from Caenorhabditis elegans	1.7e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Bos taurus	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Canis lupus familiaris	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Sus scrofa	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Ictidomys tridecemlineatus	2.8e-105
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein from Mus musculus	2.8e-105
BLAST match view associations BLAST with Psmc6 Psmc6 Psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene from Rattus norvegicus	2.8e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	9.5e-105
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 Uncharacterized protein	protein from Gallus gallus	9.5e-105
BLAST match view associations BLAST with psmC6 psmC6 psmC6 26S protease regulatory subunit S10B	gene from Dictyostelium discoideum	2.5e-104
BLAST match view associations BLAST with psmc6 psmc6 psmc6 proteasome (prosome, macropain) 26S subunit, ATPase, 6	gene_product from Danio rerio	4.1e-104
BLAST match view associations BLAST with RPT4 RPT4 RPT4	gene_product from Candida albicans	4.2e-95
BLAST match view associations BLAST with RPT4 RPT4 RPT4 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	7.0e-93
BLAST match view associations BLAST with PF13_0033 PF13_0033 PF13_0033 26S proteasome regulatory subunit, putative	gene from Plasmodium falciparum	5.0e-92
BLAST match view associations BLAST with PF13_0033 PF13_0033 PF13_0033 26S proteasome regulatory subunit, putative	protein from Plasmodium falciparum 3D7	5.0e-92
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Pongo abelii	5.6e-68
BLAST match view associations BLAST with Rpt1 Rpt1 Rpt1 Regulatory particle triple-A ATPase 1	protein from Drosophila melanogaster	7.2e-68
BLAST match view associations BLAST with rpt-1 rpt-1 rpt-1	gene from Caenorhabditis elegans	7.2e-68
BLAST match view associations BLAST with rpt-1 rpt-1 rpt-1 26S protease regulatory subunit 7	protein from Caenorhabditis elegans	7.2e-68
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Gallus gallus	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Gallus gallus	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Bos taurus	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Canis lupus familiaris	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Homo sapiens	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Homo sapiens	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 Uncharacterized protein	protein from Sus scrofa	1.5e-67
BLAST match view associations BLAST with I3LJ30 I3LJ30 I3LJ30 Uncharacterized protein	protein from Sus scrofa	1.5e-67
BLAST match view associations BLAST with psmc2 psmc2 psmc2 26S protease regulatory subunit 7	protein from Xenopus laevis	1.5e-67
BLAST match view associations BLAST with PSMC2 PSMC2 PSMC2 26S protease regulatory subunit 7	protein from Macaca fascicularis	1.5e-67
BLAST match view associations BLAST with Psmc2 Psmc2 Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2	protein from Mus musculus	1.5e-67
BLAST match view associations BLAST with psmc2 psmc2 psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2	gene_product from Danio rerio	1.5e-67
BLAST match view associations BLAST with Psmc2 Psmc2 Psmc2 proteasome (prosome, macropain) 26S subunit, ATPase 2	gene from Rattus norvegicus	3.1e-67
BLAST match view associations BLAST with Psmc2 Psmc2 Psmc2 26S protease regulatory subunit 7	protein from Rattus norvegicus	3.1e-67
BLAST match view associations BLAST with RPT1A RPT1A RPT1A regulatory particle triple-A 1A	protein from Arabidopsis thaliana	5.1e-67
BLAST match view associations BLAST with RPT1 RPT1 RPT1	gene_product from Candida albicans	7.4e-66
BLAST match view associations BLAST with RPT1 RPT1 RPT1 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	2.0e-65
BLAST match view associations BLAST with psmC2 psmC2 psmC2 26S proteasome ATPase 2 subunit	gene from Dictyostelium discoideum	5.2e-65
BLAST match view associations BLAST with Rpt6 Rpt6 Rpt6 Regulatory particle triple-A ATPase 6	protein from Drosophila melanogaster	8.5e-65
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 Uncharacterized protein	protein from Gallus gallus	1.8e-64
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Bos taurus	1.8e-64
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Homo sapiens	1.8e-64
BLAST match view associations BLAST with PSMC5 PSMC5 PSMC5 26S protease regulatory subunit 8	protein from Sus scrofa	1.8e-64
BLAST match view associations BLAST with GSTENG00035021001 GSTENG00035021001 GSTENG00035021001 Chromosome 2 SCAF15106, whole genome shotgun sequence.	protein from Tetraodon nigroviridis	1.8e-64
BLAST match view associations BLAST with Q6AZU7 Q6AZU7 Q6AZU7 Putative uncharacterized protein	protein from Xenopus laevis	1.8e-64
BLAST match view associations BLAST with psmc5 psmc5 psmc5 Putative uncharacterized protein MGC75584	protein from Xenopus (Silurana) tropicalis	1.8e-64
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 protease (prosome, macropain) 26S subunit, ATPase 5	protein from Mus musculus	1.8e-64
BLAST match view associations BLAST with Psmc5 Psmc5 Psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene from Rattus norvegicus	1.8e-64
BLAST match view associations BLAST with psmc5 psmc5 psmc5 proteasome (prosome, macropain) 26S subunit, ATPase, 5	gene_product from Danio rerio	1.8e-64
BLAST match view associations BLAST with pan pan pan Proteasome-activating nucleotidase	protein from Methanocaldococcus jannaschii DSM 2661	1.2e-63
BLAST match view associations BLAST with RPT6A RPT6A RPT6A regulatory particle triple-A ATPase 6A	protein from Arabidopsis thaliana	1.2e-63
BLAST match view associations BLAST with AT5G20000 AT5G20000 AT5G20000	protein from Arabidopsis thaliana	1.2e-63
BLAST match view associations BLAST with Rpt6R Rpt6R Rpt6R Regulatory particle triple-A ATPase 6-related	protein from Drosophila melanogaster	1.6e-63
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	gene from Plasmodium falciparum	1.6e-63
BLAST match view associations BLAST with PF10_0081 PF10_0081 PF10_0081 26S proteasome regulatory subunit 4, putative	protein from Plasmodium falciparum 3D7	1.6e-63
BLAST match view associations BLAST with PSMC6 PSMC6 PSMC6 26S protease regulatory subunit 10B	protein from Homo sapiens	4.2e-63
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c tat-binding protein homolog	gene from Plasmodium falciparum	5.4e-63
BLAST match view associations BLAST with PFL2345c PFL2345c PFL2345c Tat-binding protein homolog	protein from Plasmodium falciparum 3D7	5.4e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	6.9e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	6.9e-63
BLAST match view associations BLAST with psmc5 psmc5 psmc5 26S protease regulatory subunit 8	protein from Xenopus laevis	6.9e-63
BLAST match view associations BLAST with PF13_0063 PF13_0063 PF13_0063 26S proteasome regulatory subunit 7, putative	gene from Plasmodium falciparum	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Gallus gallus	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Proteasome (Prosome, macropain) 26S subunit, ATPase, 1	protein from Bos taurus	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Canis lupus familiaris	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 26S protease regulatory subunit 4	protein from Homo sapiens	8.8e-63
BLAST match view associations BLAST with PSMC1 PSMC1 PSMC1 Uncharacterized protein	protein from Sus scrofa	8.8e-63
BLAST match view associations BLAST with PF13_0063 PF13_0063 PF13_0063 26S proteasome regulatory subunit 7, putative	protein from Plasmodium falciparum 3D7	8.8e-63
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 protease (prosome, macropain) 26S subunit, ATPase 1	protein from Mus musculus	8.8e-63
BLAST match view associations BLAST with Psmc1 Psmc1 Psmc1 proteasome (prosome, macropain) 26S subunit, ATPase, 1	gene from Rattus norvegicus	8.8e-63
BLAST match view associations BLAST with rpt-6 rpt-6 rpt-6	gene from Caenorhabditis elegans	1.8e-62
BLAST match view associations BLAST with Rpt2 Rpt2 Rpt2 Regulatory particle triple-A ATPase 2	protein from Drosophila melanogaster	2.3e-62
BLAST match view associations BLAST with psmC5 psmC5 psmC5 HIV TAT binding-protein-related	gene from Dictyostelium discoideum	3.0e-62
BLAST match view associations BLAST with psmc1b psmc1b psmc1b proteasome (prosome, macropain) 26S subunit, ATPase, 1b	gene_product from Danio rerio	6.2e-62
BLAST match view associations BLAST with F56F11.4 F56F11.4 F56F11.4	gene from Caenorhabditis elegans	7.9e-62
BLAST match view associations BLAST with psmc1a psmc1a psmc1a proteasome (prosome, macropain) 26S subunit, ATPase, 1a	gene_product from Danio rerio	7.9e-62
BLAST match view associations BLAST with RPT6 RPT6 RPT6	gene_product from Candida albicans	1.0e-61
BLAST match view associations BLAST with RPT2b RPT2b RPT2b regulatory particle AAA-ATPase 2b	protein from Arabidopsis thaliana	1.0e-61
BLAST match view associations BLAST with psmC1 psmC1 psmC1 TAT binding protein alpha	gene from Dictyostelium discoideum	1.3e-61
BLAST match view associations BLAST with RPT2a RPT2a RPT2a regulatory particle AAA-ATPase 2A	protein from Arabidopsis thaliana	1.3e-61
BLAST match view associations BLAST with RPT6 RPT6 RPT6 ATPase of the 19S regulatory particle of the 26S proteasome	gene from Saccharomyces cerevisiae	2.4e-60
BLAST match view associations BLAST with rpt-2 rpt-2 rpt-2	gene from Caenorhabditis elegans	3.1e-60
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	gene from Plasmodium falciparum	5.0e-60
BLAST match view associations BLAST with PF11_0314 PF11_0314 PF11_0314 26S protease subunit regulatory subunit 6a, putative	protein from Plasmodium falciparum 3D7	5.0e-60