BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026258
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust.
Identities = 172/235 (73%), Positives = 203/235 (86%)
Query: 1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLR 60
+TTLTIMR LPRE DP+VYNM + G +++ +GGL++QIRELRE IELPL NPE+F R
Sbjct: 150 ITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQR 209
Query: 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY 120
VGIKPPKGVLLYGPPGTGKTLLA+A+A+ I ANF+ +S I+DKYIGESAR+IREMF Y
Sbjct: 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAY 269
Query: 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180
A++H+PCIIFMDE+DAIGGRRFSEGTSADREIQRTLMELL Q+DGFD LG+ K+IMATNR
Sbjct: 270 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329
Query: 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
PD LDPALLRPGRLDRK+EIPLPNE R+EI KIH A + K GE D+EA VK+++
Sbjct: 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSD 384
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 267 bits (682), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 121/225 (53%), Positives = 164/225 (72%)
Query: 10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
LP +DP V M E+ +V+YS VGG DQI +LRE +ELPL++PE F +GI PPKG+
Sbjct: 187 LPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGI 246
Query: 70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
LLYGPPGTGKTL ARA+A+ DA F++V+ S ++ KY+GE AR++RE+F AR + CII
Sbjct: 247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII 306
Query: 130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
F DEIDA+GG RF +G D E+QRT++EL+ QLDGFD G +K++ ATNRP+ LDPALL
Sbjct: 307 FFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366
Query: 190 RPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234
RPGR+DRK+E LP+ + R I +IH+ ++ I +E + +L
Sbjct: 367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLC 411
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 253 bits (647), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 124/229 (54%), Positives = 167/229 (72%), Gaps = 9/229 (3%)
Query: 7 MRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPP 66
MRA EVD E P NV Y +GGL Q++E+RE +ELPL +PELF +VGI+PP
Sbjct: 1 MRAKAMEVD--------ERP-NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP 51
Query: 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQP 126
KG+LLYGPPGTGKTLLA+A+A+ +A F++VV S ++ K+IGE A L++++F A++ P
Sbjct: 52 KGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAP 111
Query: 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186
IIF+DEIDAI +R T DRE+QRTLM+LL ++DGFD G VK+I ATNRPD+LDP
Sbjct: 112 SIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDP 171
Query: 187 ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235
A+LRPGR DR IE+P P+E+ R+EILKIH + +++ E + K+ E
Sbjct: 172 AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTE 220
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 250 bits (638), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 157/211 (74%)
Query: 6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
+ + L + DP+V M+ E + +Y VGGL+ QI+E++E IELP+ +PELF +GI
Sbjct: 122 LHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ 181
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
PKGV+LYGPPGTGKTLLARA+A + D F++V + ++ KYIGE +R++RE+F AR+H
Sbjct: 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA 241
Query: 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
P IIFMDEID+IG R D E+QRT++ELLNQLDGF+ +K+IMATNR D+LD
Sbjct: 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301
Query: 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216
PALLRPGR+DRKIE P P+ +R EIL+IH+
Sbjct: 302 PALLRPGRIDRKIEFPPPSVAARAEILRIHS 332
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 159/227 (70%)
Query: 6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKP 65
I+ LP E D V M ++ +YS VGGL QI EL E+I LP+ + F +GI+
Sbjct: 155 ILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA 214
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
PKG L+YGPPGTGKTLLARA A+ +A FLK+ + ++ YIGE A+L+R+ F A++
Sbjct: 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA 274
Query: 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185
P IIF+DE+DAIG +RF S DRE+QRT++ELLNQLDGF +VK++ ATNR DVLD
Sbjct: 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334
Query: 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
PALLR GRLDRKIE PLP+E SR +IL+IH+ + +I+++ + +
Sbjct: 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 243 bits (620), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 116/229 (50%), Positives = 166/229 (72%)
Query: 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG 62
T++I+ L + DP+V M + SYS +GGL QI+E++ES+ELPL +PEL+ +G
Sbjct: 153 TMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG 212
Query: 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 122
IKPPKGV+LYG PGTGKTLLA+A+A+ A FL++V S +I KY+G+ RL R++F A
Sbjct: 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG 272
Query: 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182
++ P I+F+DEIDAIG +R+ + +REIQRT++ELLNQLDGFD G VK+IMATN+ +
Sbjct: 273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332
Query: 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
LDPAL+RPGR+DRKI P+ ++ +IL IH + + +++ E +V
Sbjct: 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV 381
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 226 bits (577), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 159/223 (71%), Gaps = 1/223 (0%)
Query: 10 LPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGV 69
LP + D + M + +V+Y+ VGGL Q +E+RE++ELPL+ +L+ ++GI PP+GV
Sbjct: 150 LPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGV 209
Query: 70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
LLYGPPGTGKT+L +A+A++ A F++V S + KY+GE R++R++F AR++ P II
Sbjct: 210 LLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSII 269
Query: 130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALL 189
F+DE+D+I +RF T +DRE+QR L+ELL Q+DGFDQ VK+IMATNR D LDPALL
Sbjct: 270 FIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALL 329
Query: 190 RPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231
RPGRLDRKIE P L + + R I A+ ++ E D ++++
Sbjct: 330 RPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 130/207 (62%)
Query: 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
V++ +GGL D REL+E ++ P+ +P+ FL+ G+ P KGVL YGPPG GKTLLA+AIA
Sbjct: 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70
Query: 88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
+ ANF+ + ++ + GES +RE+F AR PC++F DE+D+I R
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
R + ++L ++DG V +I ATNRPD++DPA+LRPGRLD+ I IPLP+E+S
Sbjct: 131 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190
Query: 208 RMEILKIHAAGIAKHGEIDYEAVVKLA 234
R+ ILK + ++D E + K+
Sbjct: 191 RVAILKANLRKSPVAKDVDLEFLAKMT 217
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 183 bits (465), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 10/239 (4%)
Query: 6 IMRALPREVDPVVYNMLHEDPG----------NVSYSAVGGLSDQIRELRESIELPLMNP 55
+M +L +D + + +P V++ +GGL D REL+E ++ P+ +P
Sbjct: 441 VMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHP 500
Query: 56 ELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIR 115
+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+ ANF+ + ++ + GES +R
Sbjct: 501 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR 560
Query: 116 EMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175
E+F AR PC++F DE+D+I R R + ++L ++DG V +I
Sbjct: 561 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620
Query: 176 MATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234
ATNRPD++DPA+LRPGRLD+ I IPLP+E+SR+ ILK + ++D E + K+
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 679
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Query: 13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
E +P+ E V Y VGG Q+ +++E +ELPL +P LF +G+KPP+G+LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
GPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F A + P IIF+D
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304
Query: 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
E+DAI +R E T + E +R + +LL +DG Q V ++ ATNRP+ +DPAL R G
Sbjct: 305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
R DR+++I +P+ R+EIL+IH + ++D E V
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 183 bits (464), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 10/239 (4%)
Query: 6 IMRALPREVDPVVYNMLHEDPG----------NVSYSAVGGLSDQIRELRESIELPLMNP 55
+M +L +D + + +P V++ +GGL D REL+E ++ P+ +P
Sbjct: 441 VMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHP 500
Query: 56 ELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIR 115
+ FL+ G+ P KGVL YGPPG GKTLLA+AIA+ ANF+ + ++ + GES +R
Sbjct: 501 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR 560
Query: 116 EMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175
E+F AR PC++F DE+D+I R R + ++L ++DG V +I
Sbjct: 561 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620
Query: 176 MATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234
ATNRPD++DPA+LRPGRLD+ I IPLP+E+SR+ ILK + ++D E + K+
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 679
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Query: 13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
E +P+ E V Y +GG Q+ +++E +ELPL +P LF +G+KPP+G+LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
GPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F A + P IIF+D
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304
Query: 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
E+DAI +R E T + E +R + +LL +DG Q V ++ ATNRP+ +DPAL R G
Sbjct: 305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
R DR+++I +P+ R+EIL+IH + ++D E V
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 135/213 (63%), Gaps = 3/213 (1%)
Query: 22 LHEDPGN--VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 79
+++ GN V++ VGG + I EL+E +E L +P F R+G + PKG+LL GPPGTGK
Sbjct: 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGK 62
Query: 80 TLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139
TLLARA+A + F + S ++ ++G A +R++F A+ H PCI+F+DEIDA+G
Sbjct: 63 TLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR 122
Query: 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE 199
R + E ++TL +LL ++DGFD + ++ ATNRPD+LDPALLRPGR D+KI
Sbjct: 123 HRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 200 IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
+ P+ R +IL+IH +++ E + K
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Query: 13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
E +P+ E V Y VGG Q+ +++E +ELPL +P LF +G+KPP+G+LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
GPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F A + P IIF+D
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304
Query: 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
E+DAI +R E T + E +R + +LL +DG Q V ++ ATNRP+ +DPAL R G
Sbjct: 305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
R DR+++I +P+ R+EIL+IH + ++D E V
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Query: 13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
E +P+ E V Y +GG Q+ +++E +ELPL +P LF +G+KPP+G+LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
GPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F A + P IIF+D
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304
Query: 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
E+DAI +R E T + E +R + +LL +DG Q V ++ ATNRP+ +DPAL R G
Sbjct: 305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
R DR+++I +P+ R+EIL+IH + ++D E V
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Query: 13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
E +P+ E V Y +GG Q+ +++E +ELPL +P LF +G+KPP+G+LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
GPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F A + P IIF+D
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304
Query: 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
E+DAI +R E T + E +R + +LL +DG Q V ++ ATNRP+ +DPAL R G
Sbjct: 305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
R DR+++I +P+ R+EIL+IH + ++D E V
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 135/218 (61%), Gaps = 3/218 (1%)
Query: 13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 72
E +P+ E V Y +GG Q+ +++E +ELPL +P LF +G+KPP+G+LLY
Sbjct: 185 EGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244
Query: 73 GPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMD 132
GPPGTGKTL+ARA+A+ A F + I+ K GES +R+ F A + P IIF+D
Sbjct: 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304
Query: 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPG 192
E+DAI +R E T + E +R + +LL +DG Q V ++ ATNRP+ +DPAL R G
Sbjct: 305 ELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361
Query: 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230
R DR+++I +P+ R+EIL+IH + ++D E V
Sbjct: 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 173 bits (439), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 134/213 (62%), Gaps = 3/213 (1%)
Query: 22 LHEDPGN--VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 79
+++ GN V++ VGG + I EL+E +E L +P F R+G + PKG+LL GPPGTG
Sbjct: 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGA 62
Query: 80 TLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139
TLLARA+A + F + S ++ ++G A +R++F A+ H PCI+F+DEIDA+G
Sbjct: 63 TLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR 122
Query: 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE 199
R + E ++TL +LL ++DGFD + ++ ATNRPD+LDPALLRPGR D+KI
Sbjct: 123 HRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 200 IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
+ P+ R +IL+IH +++ E + K
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
Query: 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
ML ED +++ V G + E+ E +E L P F ++G K PKGVL+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
LLA+AIA F + S ++ ++G A +R+MF A+ PCIIF+DEIDA+G +
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
R + E ++TL ++L ++DGF+ + +I ATNRPDVLDPALLRPGR DR++ +
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 179
Query: 201 PLPNEQSRMEILKIH 215
LP+ + R +ILK+H
Sbjct: 180 GLPDVRGREQILKVH 194
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 125/196 (63%), Gaps = 7/196 (3%)
Query: 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
NV+++ +G L D EL +I P+ NP+ F +G+ P GVLL GPPG GKTLLA+A+A
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147
+ NF+ V +++ Y+GES R +R++F A++ PC+IF DE+DA+ RR T
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 125
Query: 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
A R + +LL ++DG + +V ++ ATNRPD++DPA+LRPGRLD+ + + LP
Sbjct: 126 AS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 208 RMEILKIHAAGIAKHG 223
R+ ILK I K+G
Sbjct: 183 RLAILKT----ITKNG 194
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 134/213 (62%), Gaps = 2/213 (0%)
Query: 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK 79
++L E P V++ V G + EL+E +E L NP F +G + PKGVLL GPPG GK
Sbjct: 5 SVLTEAP-KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGK 62
Query: 80 TLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139
T LARA+A F+ S ++ ++G A +R++F A+ H PCI+F+DEIDA+G
Sbjct: 63 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122
Query: 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIE 199
+R S + E ++TL +LL ++DGF++ + ++ ATNRPD+LDPALLRPGR DR+I
Sbjct: 123 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 182
Query: 200 IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
I P+ + R +IL+IHA G ++D + K
Sbjct: 183 IDAPDVKGREQILRIHARGKPLAEDVDLALLAK 215
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 2/198 (1%)
Query: 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
+L E P V++ V G + EL+E +E L NP F +G + PKGVLL GPPG GKT
Sbjct: 30 VLTEAP-KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
LARA+A F+ S ++ ++G A +R++F A+ H PCI+F+DEIDA+G +
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
R S + E ++TL +LL ++DGF++ + ++ ATNRPD+LDPALLRPGR DR+I I
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
Query: 201 PLPNEQSRMEILKIHAAG 218
P+ + R +IL+IHA G
Sbjct: 208 DAPDVKGREQILRIHARG 225
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 2/198 (1%)
Query: 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
+L E P V++ V G + EL+E +E L NP F +G + PKGVLL GPPG GKT
Sbjct: 21 VLTEAP-KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKT 78
Query: 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
LARA+A F+ S ++ ++G A +R++F A+ H PCI+F+DEIDA+G +
Sbjct: 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 138
Query: 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
R S + E ++TL +LL ++DGF++ + ++ ATNRPD+LDPALLRPGR DR+I I
Sbjct: 139 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 198
Query: 201 PLPNEQSRMEILKIHAAG 218
P+ + R +IL+IHA G
Sbjct: 199 DAPDVKGREQILRIHARG 216
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 133/212 (62%), Gaps = 2/212 (0%)
Query: 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
+L E P V++ V G + EL+E +E L NP F +G + PKGVLL GPPG GKT
Sbjct: 30 VLTEAP-KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
LARA+A F+ S ++ ++G A +R++F A+ H PCI+F+DEIDA+G +
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
R S + E ++TL +LL ++DGF++ + ++ ATNRPD+LDPALLRPGR DR+I I
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207
Query: 201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232
P+ + R +IL+IHA G ++D + K
Sbjct: 208 DAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 131/208 (62%), Gaps = 3/208 (1%)
Query: 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87
NV + + G + E+ E ++ L PE + +G K PKGVLL GPPGTGKTLLA+A+A
Sbjct: 7 NVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA 65
Query: 88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG-T 146
F + S+ I+ ++G A +R++F A+ P IIF+DEIDAIG R + G
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 147 SADREIQRTLMELLNQLDGF-DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNE 205
S + E ++TL +LL ++DGF + V ++ ATNRP++LDPAL+RPGR DR++ + P+
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDF 185
Query: 206 QSRMEILKIHAAGIAKHGEIDYEAVVKL 233
R+EILK+H G+ +++ + V KL
Sbjct: 186 NGRVEILKVHIKGVKLANDVNLQEVAKL 213
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 119/188 (63%), Gaps = 2/188 (1%)
Query: 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
VS+ V G+ + E+RE ++ L +PE FL++G K PKG LL GPPG GKTLLA+A+A+
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS- 147
FL + + ++ G A +R +F AR PCI+++DEIDA+G +R + +
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207
++ E ++TL +LL ++DG V ++ +TNR D+LD AL+RPGRLDR + I LP Q
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 208 RMEILKIH 215
R EI + H
Sbjct: 182 RREIFEQH 189
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 127/202 (62%), Gaps = 7/202 (3%)
Query: 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYG 73
+DP +L E P NV + V GL L+E++ LP+ P LF + KP G+LLYG
Sbjct: 2 IDPFTA-ILSEKP-NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYG 58
Query: 74 PPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDE 133
PPGTGK+ LA+A+A+ ++ F V SS ++ K++GES +L++++F AR+++P IIF+D+
Sbjct: 59 PPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQ 118
Query: 134 IDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGR 193
+DA+ G R + A R I+ L+ +N + G D G V ++ ATN P LD A+ R R
Sbjct: 119 VDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--R 174
Query: 194 LDRKIEIPLPNEQSRMEILKIH 215
+R+I IPLP+ +R + +I+
Sbjct: 175 FERRIYIPLPDLAARTTMFEIN 196
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Query: 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81
L E P NV + V GL L+E++ LP+ P LF + KP G+LLYGPPGTGK+
Sbjct: 18 LSEKP-NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 75
Query: 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141
LA+A+A+ ++ F V SS ++ K++GES +L++++F AR+++P IIF+DE+DA+ G R
Sbjct: 76 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR 135
Query: 142 FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIP 201
+ A R I+ L+ +N + G D G V ++ ATN P LD A+ R R +R+I IP
Sbjct: 136 GEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIP 191
Query: 202 LPNEQSRMEILKIH 215
LP+ +R + +I+
Sbjct: 192 LPDLAARTTMFEIN 205
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 124/195 (63%), Gaps = 6/195 (3%)
Query: 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
+L E P NV + V GL L+E++ LP+ P LF + KP G+LLYGPPGTGK+
Sbjct: 41 ILSEKP-NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKS 98
Query: 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
LA+A+A+ ++ F V SS ++ K++GES +L++++F AR+++P IIF+D++DA+ G
Sbjct: 99 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 158
Query: 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
R + A R I+ L+ +N + G D G V ++ ATN P LD A+ R R +R+I I
Sbjct: 159 RGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYI 214
Query: 201 PLPNEQSRMEILKIH 215
PLP+ +R + +I+
Sbjct: 215 PLPDLAARTTMFEIN 229
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 124/195 (63%), Gaps = 6/195 (3%)
Query: 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80
+L E P NV + V GL L+E++ LP+ P LF + KP G+LLYGPPGTGK+
Sbjct: 26 ILSEKP-NVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKS 83
Query: 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140
LA+A+A+ ++ F V SS ++ K++GES +L++++F AR+++P IIF+D++DA+ G
Sbjct: 84 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 143
Query: 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200
R + A R I+ L+ +N + G D G V ++ ATN P LD A+ R R +R+I I
Sbjct: 144 RGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYI 199
Query: 201 PLPNEQSRMEILKIH 215
PLP+ +R + +I+
Sbjct: 200 PLPDLAARTTMFEIN 214
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 120/192 (62%), Gaps = 12/192 (6%)
Query: 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAI 86
NV +S V GL L+E++ LP+ P LF G + P +G+LL+GPPGTGK+ LA+A+
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAV 65
Query: 87 ASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145
A+ + + F + SS ++ K++GES +L++ +F AR+++P IIF+DEID++ G R
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
Query: 146 TSADREIQRTLMELLNQLD--GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
+ A R I+ E L Q+ G D G + ++ ATN P VLD A+ R R +++I IPLP
Sbjct: 126 SEAARRIK---TEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 179
Query: 204 NEQSRMEILKIH 215
+R + K+H
Sbjct: 180 EPHARAAMFKLH 191
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 120/192 (62%), Gaps = 12/192 (6%)
Query: 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAI 86
NV +S V GL L+E++ LP+ P LF G + P +G+LL+GPPGTGK+ LA+A+
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAV 187
Query: 87 ASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145
A+ + + F + SS ++ K++GES +L++ +F AR+++P IIF+DEID++ G R
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 247
Query: 146 TSADREIQRTLMELLNQLD--GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203
+ A R I+ E L Q+ G D G + ++ ATN P VLD A+ R R +++I IPLP
Sbjct: 248 SEAARRIK---TEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLP 301
Query: 204 NEQSRMEILKIH 215
+R + ++H
Sbjct: 302 EAHARAAMFRLH 313
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 132/223 (59%), Gaps = 9/223 (4%)
Query: 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPP-KGVLLYGPP 75
++ + + E V ++ + G + L+E + LP + PELF G++ P KG+LL+GPP
Sbjct: 6 LILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPP 63
Query: 76 GTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEID 135
G GKTLLARA+A+ A FL + ++++ KY+G+ +L+R +F AR QP IIF+DE+D
Sbjct: 64 GNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVD 123
Query: 136 AIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLD 195
++ R S A R ++ + + L G ++ ++ ATNRP LD A LR R
Sbjct: 124 SLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 196 RKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEAVVKLAEVS 237
+++ + LP+EQ+R +L + K G +D EA+ +LA+++
Sbjct: 182 KRVYVSLPDEQTRELLLN---RLLQKQGSPLDTEALRRLAKIT 221
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 122/204 (59%), Gaps = 14/204 (6%)
Query: 12 REVDPVVYNMLHE---DPGN-VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPP- 66
R VD + N++ D G V + + G + L+E + LP + PELF G++ P
Sbjct: 91 RNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF--TGLRAPA 148
Query: 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQP 126
+G+LL+GPPG GKT+LA+A+A+ +A F + ++++ KY+GE +L+R +F AR+ QP
Sbjct: 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQP 208
Query: 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVL 184
IIF+D++D++ R A R ++ E L + DG G +V ++ ATNRP L
Sbjct: 209 SIIFIDQVDSLLCERREGEHDASRRLK---TEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265
Query: 185 DPALLRPGRLDRKIEIPLPNEQSR 208
D A+LR R +++ + LPNE++R
Sbjct: 266 DEAVLR--RFIKRVYVSLPNEETR 287
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 122/205 (59%), Gaps = 11/205 (5%)
Query: 11 PREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK-PPKGV 69
P+ ++ ++ ++ P V++ + G+ ++E + P++ P++F G++ PPKG+
Sbjct: 64 PKMIELIMNEIMDHGP-PVNWEDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGI 120
Query: 70 LLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCII 129
LL+GPPGTGKTL+ + IAS A F + +S++ K++GE +++R +F AR QP +I
Sbjct: 121 LLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVI 180
Query: 130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM--ATNRPDVLDPA 187
F+DEID++ +R G +R E L QLDG + ++++ ATNRP +D A
Sbjct: 181 FIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237
Query: 188 LLRPGRLDRKIEIPLPNEQSRMEIL 212
R RL +++ IPLP +R +I+
Sbjct: 238 ARR--RLVKRLYIPLPEASARKQIV 260
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 15/150 (10%)
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIG-ESARLIREMF---GY 120
PK +L+ GP G GKT +AR +A +A F+KV ++ + Y+G E +IR++ G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 121 ARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQLDGFDQLGKVK---- 173
A D Q I+F+DEID I + G RE +QR L+ L+ + G VK
Sbjct: 110 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169
Query: 174 MIMATNRPDVLDPALLRP---GRLDRKIEI 200
+ +A+ V P+ L P GRL ++E+
Sbjct: 170 LFIASGAFQVARPSDLIPELQGRLPIRVEL 199
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-YIGES-----ARLIREMFGYA 121
+LL GP G+GKTL+A+ +A ++D ++++ + Y+GE RL++
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREI 152
+ Q I+F+DEID I R SE S R++
Sbjct: 134 QKAQKGIVFIDEIDKIS--RLSENRSITRDV 162
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 89/193 (46%), Gaps = 21/193 (10%)
Query: 58 FLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIRE 116
FL++ IK P + ++G G GK+ + + N + + + + GE A+LIR+
Sbjct: 27 FLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQ 86
Query: 117 MFGYA----RDHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDG 165
+ A R C +F++++DA GR ++ T ++ + TLM + + QL G
Sbjct: 87 RYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 146
Query: 166 F---DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH 222
+ +V +I+ N L L+R GR+++ P + R+ + GI +
Sbjct: 147 MYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CTGIFRT 200
Query: 223 GEIDYEAVVKLAE 235
+ E VVK+ +
Sbjct: 201 DNVPAEDVVKIVD 213
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-YIGESA-----RLIREMFGYAR 122
+LL GP G+GKTLLA +A +D F ++ + + Y+GE +L+++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 123 DHQPCIIFMDEIDAIGGRRFSEGTSADRE-----IQRTLMELL 160
Q I+++D+ID I R S+ S R+ +Q+ L++L+
Sbjct: 114 KAQRGIVYIDQIDKI--SRKSDNPSITRDVSGEGVQQALLKLI 154
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-YIGESA-----RLIREMFGYAR 122
+LL GP G+GKTLLA +A +D F ++ + + Y+GE +L+++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 123 DHQPCIIFMDEIDAIGGRRFSEGTSADRE-----IQRTLMELL 160
Q I+++D+ID I R S+ S R+ +Q+ L++L+
Sbjct: 114 KAQRGIVYIDQIDKIS--RKSDNPSITRDVSGEGVQQALLKLI 154
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 53 MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGESA 111
+N EL V PK +L+ GP G GKT +AR +A +A F+KV ++ + Y+G
Sbjct: 40 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG--- 93
Query: 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142
+E+ RD + M + AI R+
Sbjct: 94 ---KEVDSIIRDLTDAAVKMVRVQAIEKNRY 121
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 66 PKGVLLYGPPGTGK-TLLARAIASNIDANFLKVVSSAIIDKYI----GESARLI--REMF 118
P GV + PPG + T +++ N+ K I D E+A+L+ E+
Sbjct: 181 PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 240
Query: 119 GYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQLDGFDQLGKVK-- 173
A D Q I+F+DEID I R S G RE +QR L+ L+ + G VK
Sbjct: 241 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 300
Query: 174 --MIMATNRPDVLDPALLRP---GRLDRKIEI 200
+ +A+ + P+ L P GRL ++E+
Sbjct: 301 HILFIASGAFQIAKPSDLIPELQGRLPIRVEL 332
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 53 MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGESA 111
+N EL V PK +L+ GP G GKT +AR +A +A F+KV ++ + Y+G
Sbjct: 39 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG--- 92
Query: 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142
+E+ RD + M + AI R+
Sbjct: 93 ---KEVDSIIRDLTDAAVKMVRVQAIEKNRY 120
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 66 PKGVLLYGPPGTGK-TLLARAIASNIDANFLKVVSSAIIDKYI----GESARLI--REMF 118
P GV + PPG + T +++ N+ K I D E+A+L+ E+
Sbjct: 180 PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 239
Query: 119 GYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQLDGFDQLGKVK-- 173
A D Q I+F+DEID I R S G RE +QR L+ L+ + G VK
Sbjct: 240 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 299
Query: 174 --MIMATNRPDVLDPALLRP---GRLDRKIEI 200
+ +A+ + P+ L P GRL ++E+
Sbjct: 300 HILFIASGAFQIAKPSDLIPELQGRLPIRVEL 331
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 53 MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGESA 111
+N EL V PK +L+ GP G GKT +AR +A +A F+KV ++ + Y+G
Sbjct: 46 LNEELRHEV---TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG--- 99
Query: 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142
+E+ RD + M + AI R+
Sbjct: 100 ---KEVDSIIRDLTDAAVKMVRVQAIEKNRY 127
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 66 PKGVLLYGPPGTGK-TLLARAIASNIDANFLKVVSSAIIDKYI----GESARLI--REMF 118
P GV + PPG + T +++ N+ K I D E+A+L+ E+
Sbjct: 187 PMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELK 246
Query: 119 GYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE-IQRTLMELLNQLDGFDQLGKVK-- 173
A D Q I+F+DEID I R S G RE +QR L+ L+ + G VK
Sbjct: 247 QDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTD 306
Query: 174 --MIMATNRPDVLDPALLRP---GRLDRKIEI 200
+ +A+ + P+ L P GRL ++E+
Sbjct: 307 HILFIASGAFQIAKPSDLIPELQGRLPIRVEL 338
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIG--ESARL--IREMFGY 120
P VLL GPP +GKT LA IA + F+K+ S DK IG E+A+ ++++F
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDD 119
Query: 121 ARDHQPCIIFMDEID 135
A Q + +D+I+
Sbjct: 120 AYKSQLSCVVVDDIE 134
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIG--ESARL--IREMFGY 120
P VLL GPP +GKT LA IA + F+K+ S DK IG E+A+ ++++F
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDD 118
Query: 121 ARDHQPCIIFMDEID 135
A Q + +D+I+
Sbjct: 119 AYKSQLSCVVVDDIE 133
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 69 VLLYGPPGTGKTLLARAIA--SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQP 126
++L+GPPGTGKT LA IA +N D + V+S + + IRE AR ++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGV---------KEIREAIERARQNRN 103
Query: 127 C----IIFMDEI 134
I+F+DE+
Sbjct: 104 AGRRTILFVDEV 115
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
+P + +LL+GPPG GKT LA IA + N L+V S I+K +A L +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSL------ 88
Query: 124 HQPCIIFMDEI 134
+ I+F+DEI
Sbjct: 89 EEGDILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
+P + +LL+GPPG GKT LA IA + N L+V S I+K +A L +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSL------ 88
Query: 124 HQPCIIFMDEI 134
+ I+F+DEI
Sbjct: 89 EEGDILFIDEI 99
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
+P + +LL+GPPG GKT LA IA + N L+V S I+K +A L +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSL------ 88
Query: 124 HQPCIIFMDEI 134
+ I+F+DEI
Sbjct: 89 EEGDILFIDEI 99
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIG-ESARLIREMFGYA 121
PK +L+ GP G GKT +AR +A +A F+KV ++ + Y+G E +IR++ A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 42 RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK-TLLARAIASNIDANFLKVVSS 100
++LRE L + E+ + V GV + PPG + T +++ N+ ++ K
Sbjct: 161 KKLREG---QLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKM 217
Query: 101 AIIDKYIG----ESARLI--REMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE- 151
I D E+A+LI E+ A D Q I+F+DEID I + G RE
Sbjct: 218 KIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREG 277
Query: 152 IQRTLMELLNQLDGFDQLGKVK----MIMATNRPDVLDPALLRP---GRLDRKIEI 200
+QR L+ L+ + G VK + +A+ V P+ L P GRL ++E+
Sbjct: 278 VQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 333
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIG-ESARLIREMFGYA 121
PK +L GP G GKT +AR +A +A F+KV ++ + Y+G E +IR++ A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 42 RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGK-TLLARAIASNIDANFLKVVSS 100
++LRE L + E+ + V GV + PPG + T +++ N+ ++ K
Sbjct: 161 KKLREG---QLDDKEIEIDVSAGVSXGVEIXAPPGXEEXTNQLQSLFQNLGSDKTKKRKX 217
Query: 101 AIIDKYIG----ESARLI--REMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADRE- 151
I D E+A+LI E+ A D Q I+F+DEID I + G RE
Sbjct: 218 KIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREG 277
Query: 152 IQRTLMELLNQLDGFDQLGKVK----MIMATNRPDVLDPALLRP---GRLDRKIEI 200
+QR L+ L+ + G VK + +A+ V P+ L P GRL ++E+
Sbjct: 278 VQRDLLPLVEGSTVSTKHGXVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 333
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCI 128
VLL GPPG GKT LA IAS + N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 129 IFMDEI 134
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCI 128
VLL GPPG GKT LA IAS + N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 129 IFMDEI 134
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCI 128
VLL GPPG GKT LA IAS + N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 129 IFMDEI 134
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCI 128
VLL GPPG GKT LA IAS + N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 129 IFMDEI 134
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCI 128
VLL GPPG GKT LA IAS + N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 129 IFMDEI 134
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 67 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARLI 114
+ VLL GPPGTGKT LA AIA + + F +V S + I ++ L+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 113
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK---------YIGESARLIREMFG 119
+ L GPPG GKT LA++IA ++ F+++ + D+ Y+G I +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 120 YARDHQPCIIFMDEIDAIGGRRFSEGTSADREI----QRTLMELLNQLDGFDQLGKVKMI 175
A P + +DEID + + +SA E+ Q + + FD L KV I
Sbjct: 171 KAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFD-LSKVLFI 228
Query: 176 MATNRPDVLDPALLRPGRLDRK--IEIPLPNEQSRMEILKIH--AAGIAKHG 223
N + P LR DR I I E ++EI+K H I +HG
Sbjct: 229 ATANNLATI-PGPLR----DRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHG 275
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 33/123 (26%)
Query: 39 DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98
DQIR++ SI PL E P + +YG GTGKT + + + S + FL
Sbjct: 27 DQIRKI-ASILAPLYREE--------KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKF 77
Query: 99 SSAIIDK----------------------YIGES-ARLIREMFGYARDH-QPCIIFMDEI 134
I+ + G S A L R + RD+ +I +DEI
Sbjct: 78 KHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137
Query: 135 DAI 137
DA
Sbjct: 138 DAF 140
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCI 128
VLL GPPG G+T LA IAS + N + V S ++ K G+ A ++ + + +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVKQ-GDMAAILTSL------ERGDV 105
Query: 129 IFMDEI 134
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 67 KGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGESARL 113
+ VLL GPPGTGKT LA AIA + + F V S + I ++ L
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVL 126
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYI----GESARLIREMFGYAR 122
+ +LYGPPG GKT A +A + + L+ +S + K + ++A + GY +
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 123 DHQPC--------IIFMDEIDAIGG 139
++ +I MDE+D + G
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSG 162
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 62 GIKPPKGV--LLYGPPGTGKTLLARAIASNID 91
++ PKG+ L+ G PGTGKT +A IA+ +D
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELD 35
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 58 FLRVGIKPPKGVLLYGPPGTGKTLLARAIA-----SNIDANFLKVVSS-----AIIDKYI 107
+++ G P +L GPPG GKT A A+A N NFL++ +S +I + +
Sbjct: 40 YVKTGSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKV 97
Query: 108 GESARLIREMFGYARDHQPCIIFMDEIDAI 137
E AR + + G + IIF+DE DA+
Sbjct: 98 KEFAR-TKPIGGASFK----IIFLDEADAL 122
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 15/125 (12%)
Query: 50 LPLMNPELFLRVGIKPP-KGVLLYGP-PGTGKTLLARAIASNIDANFLKVVSSAIIDKYI 107
LP + E F + K ++L+ P PGTGKT +A+A+ +++A+ + V S ++
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 108 GESARLIREMFGYARDHQPCIIFMDEIDAIG-------GRRFSEGTSADREIQRTLMELL 160
L + D + +I +DE D G R F E S++ I T
Sbjct: 90 --RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT----A 143
Query: 161 NQLDG 165
N +DG
Sbjct: 144 NNIDG 148
>pdb|2YWV|A Chain A, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
pdb|2YWV|B Chain B, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
Length = 244
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 170 GKVKMIMATNRPDVL-----DPALLRPGRLDRKIEIP----LPNEQSRMEILKIHAAGIA 220
GK K I AT+ PDVL D A G ++K I L NE S + LK+ AGIA
Sbjct: 13 GKAKKIYATDEPDVLWVEYKDSATAFNG--EKKATIAGKGRLNNEISSLLFLKLREAGIA 70
Query: 221 KH 222
H
Sbjct: 71 NH 72
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 62 GIKPPK----GVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESARLI 114
G+K PK + GP G GKT LARA+A +I + + +++ S ++K+ +L
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Query: 115 REMFGYARDHQPCIIFMDEID 135
++ R ++ +D I+
Sbjct: 573 EKV----RRKPYSVVLLDAIE 589
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 70 LLYGPPGTGKTLLARAIASNIDANFL-------KVVSSAIIDKYIGESARLIREMFGYAR 122
+L G PG GKT +A +A I N + +V++ + KY GE ++++ R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 123 DHQPCIIFMD-EIDA 136
I+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 35/177 (19%)
Query: 69 VLLYGPPGTGKTLLARAIA-----SNIDANFLKVVSS-----AIIDKYIGESARLIREMF 118
+L GPPGTGKT A A+A N NF+++ +S ++ I E AR
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART--API 98
Query: 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178
G A IIF+DE DA+ A ++RT ME+ ++ + I++
Sbjct: 99 GGAPFK---IIFLDEADALTA-------DAQAALRRT-MEMYSK--------SCRFILSC 139
Query: 179 NRPD-VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234
N +++P R K P+P E + +L+I K E EA++ ++
Sbjct: 140 NYVSRIIEPIQSRCAVFRFK---PVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS 193
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYAESRAQLLRNAYSWGMDFE 336
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 35/177 (19%)
Query: 69 VLLYGPPGTGKTLLARAIA-----SNIDANFLKVVSS-----AIIDKYIGESARLIREMF 118
+L GPPGTGKT A A+A N NF+++ +S ++ I E AR
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP--I 98
Query: 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178
G A IIF+DE DA+ A ++RT ME+ ++ + I++
Sbjct: 99 GGAPFK---IIFLDEADALTA-------DAQAALRRT-MEMYSK--------SCRFILSC 139
Query: 179 NRPD-VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234
N +++P R K P+P E + +L+I K E EA++ ++
Sbjct: 140 NYVSRIIEPIQSRCAVFRFK---PVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS 193
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYAESRAQLLRNAYSWGMDFE 336
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDANFL 95
K ++ G G+GK+ LARA+A ++D FL
Sbjct: 4 AKNIVFIGFXGSGKSTLARALAKDLDLVFL 33
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 70 LLYGPPGTGKTLLARAIASNI------DANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
++ GPPG+GK + + IA N +FL+ A + +GE A+ E D
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTE--VGEMAKQYIEKSLLVPD 66
Query: 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181
H + M E++ G+ + + L Q + D++ +V ++++ N P
Sbjct: 67 HVITRLMMSELENRRGQHW---------LLDGFPRTLGQAEALDKICEVDLVISLNIP 115
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 25/122 (20%)
Query: 70 LLYGPPGTGKTLLARAIASNI------DANFLKVVSSAIIDKYIGESARLIREMFGYARD 123
++ GPPG+GK + + IA N +FL+ A + +GE A+ E D
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTE--VGEMAKQYIEKSLLVPD 88
Query: 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME----LLNQLDGFDQLGKVKMIMATN 179
H + M E++ +R Q L++ L Q + D++ +V ++++ N
Sbjct: 89 HVITRLMMSELE-------------NRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLN 135
Query: 180 RP 181
P
Sbjct: 136 IP 137
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 271 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 323
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEESRAQLLRNAYSWGMDFE 336
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
+L G GTGKTLL N AN AI+ Y A+L+R + + D +
Sbjct: 284 ILATGATGTGKTLLVSRFVENACAN----KERAILFAYEEXRAQLLRNAYSWGMDFE 336
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCI 128
+L GP G GKT LA I+ AN +K ++ I+K G+ A ++ + + I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSAN-IKTTAAPXIEKS-GDLAAILTNL------SEGDI 109
Query: 129 IFMDEI 134
+F+DEI
Sbjct: 110 LFIDEI 115
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 51 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97
PL +PE L I LL G PG GKT L + +AS ++ V
Sbjct: 2 PLGSPEFMLLPNI------LLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 69 VLLYGPPGTGKTLLARAIASNI 90
+L YGPPGTGKT A+A I
Sbjct: 49 LLFYGPPGTGKTSTIVALAREI 70
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 70 LLYGPPGTGKTLLARAIASNIDANFL-------KVVSSAIIDKYIGESARLIREMFGYAR 122
+L G PG GKT +A +A I N + +V++ + KY GE ++++ R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 123 DHQPCIIFMD-EIDA 136
I+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
>pdb|1A41|A Chain A, Type 1-Topoisomerase Catalytic Fragment From Vaccinia
Virus
Length = 234
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
V+Y+ + ++ + PL +P+ + + IK V+ + P + + +A I
Sbjct: 147 VNYTFLYNFWTNVKSIS-----PLPSPKKLIALTIKQTAEVVGHTPSISKRAYMATTILE 201
Query: 89 NI-DANFLKVVSSAIIDKYIG 108
+ D NFL VVS D+++
Sbjct: 202 MVKDKNFLDVVSKTTFDEFLS 222
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 29/177 (16%)
Query: 70 LLYGPPGTGKTLLARAIASNI-DANFLKVVSSAII-----------DKYIGESARLIREM 117
LL G G GKT +A +A I + +V++ I KY G+ + + +
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177
I+F+DEI I G + G D N + GK+++I +
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---------AANLIKPLLSSGKIRVIGS 321
Query: 178 TNRPDVL-----DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA 229
T + D AL R +KI+I P+ + ++I+ H ++ Y A
Sbjct: 322 TTYQEFSNIFEKDRAL---ARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTA 375
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 58 FLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAII 103
+R G + VL+ G PGTGKT +A +A + D F + S I
Sbjct: 62 MIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 69 VLLYGPPGTGKTLLARAIASNI------DANFLKVVSS-----AIIDKYIGESARL-IRE 116
+L YGPPGTGKT A+ + + L++ +S +I+ + + ARL + +
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 120
Query: 117 MFGYARDHQPC----IIFMDEIDAI 137
+ ++ PC II +DE D++
Sbjct: 121 PSKHDLENYPCPPYKIIILDEADSM 145
>pdb|2H7G|X Chain X, Structure Of Variola Topoisomerase Non-Covalently Bound To
Dna
pdb|3IGC|A Chain A, Smallpox Virus Topoisomerase-Dna Transition State
Length = 314
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
V+Y+ + ++ + PL +P+ + + IK V+ + P + + +A I
Sbjct: 227 VNYTFLYNFWTNVKSIS-----PLPSPKKLIALTIKQTAEVVGHTPSISKRAYMATTILE 281
Query: 89 NI-DANFLKVVSSAIIDKYIG 108
+ D NFL VVS D+++
Sbjct: 282 MVKDKNFLDVVSKTTFDEFLS 302
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 58 FLRVGIKPPKGVLLYGPPGTGKTLLA 83
FLR ++ GV L P G+GKT++A
Sbjct: 14 FLRSSLQKSYGVALESPTGSGKTIMA 39
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDA 92
P LLYG GTGKT +AR + ++A
Sbjct: 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70
>pdb|2H7F|X Chain X, Structure Of Variola Topoisomerase Covalently Bound To Dna
Length = 314
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88
V+Y+ + ++ + PL +P+ + + IK V+ + P + + +A I
Sbjct: 227 VNYTFLYNFWTNVKSIS-----PLPSPKKLIALTIKQTAEVVGHTPSISKRAXMATTILE 281
Query: 89 NI-DANFLKVVSSAIIDKYIG 108
+ D NFL VVS D+++
Sbjct: 282 MVKDKNFLDVVSKTTFDEFLS 302
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 67 KGVLLYGPPGTGKTLL 82
+G++L GPPG+GKT++
Sbjct: 1268 RGIILCGPPGSGKTMI 1283
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 67 KGVLLYGPPGTGKTLL 82
+G++L GPPG+GKT++
Sbjct: 1049 RGIILCGPPGSGKTMI 1064
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 69 VLLYGPPGTGKTLLARAIA 87
VLL G PGTGK++L +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90
G + P +++ G P TGKT L++A+A+ +
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALATGL 29
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 59 LRVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAII 103
+R G + VL+ G PGTGKT +A A + D F + S I
Sbjct: 78 IREGKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIF 124
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 28/153 (18%)
Query: 37 LSDQIRELRESIELPLMNPELFLRVGIKPP---KGVLLYGPPGTGKTLLARAIA---SNI 90
L+++I L S+E L +R+ + + V L GPPG K+L+AR + N
Sbjct: 9 LAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNA 68
Query: 91 DANFLKVVSSAIIDKYIG--------ESARLIREMFGYARDHQPCIIFMDEI-------- 134
A + + ++ G + R R GY + + I+F+DEI
Sbjct: 69 RAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAE--IVFLDEIWKAGPAIL 126
Query: 135 ----DAIGGRRFSEGTSADREIQRTLMELLNQL 163
AI R+F G ++ R L+ N+L
Sbjct: 127 NTLLTAINERQFRNGAHVEKIPMRLLVAASNEL 159
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 58 FLRVGIKPPK-----GVLLYGPPGTGKTLLARAIASNIDANF----LKVVSSAIIDKYIG 108
F G+ PK GVL G G GKT + + +A I NF KV ++ ++ G
Sbjct: 14 FKLFGLPTPKNNTILGVL--GKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRG 71
Query: 109 ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168
+E++ Y ++ ++ +E+ + ++ E A + ++ T+ E+L ++D +
Sbjct: 72 ------KEIYNYFKE-----LYSNELKIVHKIQYVE--YASKFLKGTVNEILTKIDERGK 118
Query: 169 LGKVKMIMATNRPDVLDPALLRPGRLDR 196
+VK ++ D +L G L R
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQR 146
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-------YIGESARLIREMFGYA 121
V+L G PGTGK+ +A+A ++ L+V A K G +A + + GY
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYG 266
Query: 122 -----RDH-QPC---IIFMDEIDAIG 138
+H +P ++ +DE+ +G
Sbjct: 267 PQGFRHNHLEPAPYDLLIVDEVSMMG 292
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 60 RVGIKPPK----GVLLYGPPGTGKTLLARAIASNI 90
R G+K P L GP G GKT LA+ +A+ +
Sbjct: 578 RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 65 PPKGVLLYGPPGTGKTLLARAIASNID-------ANFLKVVSSAIIDKYIGESARLIREM 117
P + G PGTGKT +A +A + + + V ++ +YIG +A +E+
Sbjct: 59 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 118
Query: 118 FGYARDHQPCIIFMDE 133
A ++F+DE
Sbjct: 119 LKRA---MGGVLFIDE 131
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 65 PPKGVLLYGPPGTGKTLLARAIASNID-------ANFLKVVSSAIIDKYIGESARLIREM 117
P + G PGTGKT +A +A + + + V ++ +YIG +A +E+
Sbjct: 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 125
Query: 118 FGYARDHQPCIIFMDE 133
A ++F+DE
Sbjct: 126 LKRA---MGGVLFIDE 138
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREM 117
K KG+ L+G G GKT L AIA+ + + VSS I+ Y+ E L RE+
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIV--YVPE---LFREL 97
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97
+LL G PG GKT L + +AS ++ V
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|4GMV|A Chain A, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
pdb|4GMV|B Chain B, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
Length = 281
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG 138
++D + ++ VS +++ + L+ + + RD Q +IFM+ I+
Sbjct: 70 SLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYA 119
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95
+ ++ P LL G PG+GKT L AI N +
Sbjct: 27 KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVI 62
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102
P + L GP GKT LA A+A + + V S+ I
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41
>pdb|4GN1|A Chain A, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|B Chain B, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|C Chain C, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|D Chain D, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
Length = 255
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 89 NIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIG 138
++D + ++ VS +++ + L+ + + RD Q +IFM+ I+
Sbjct: 44 SLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYA 93
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 60 RVGIKPPK----GVLLYGPPGTGKTLLARAIASNI 90
R G+K P L GP G GKT LA+ +A+ +
Sbjct: 34 RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 68
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 60 RVGIKPPK----GVLLYGPPGTGKTLLARAIASNI 90
R G+K P L GP G GKT LA+ +A+ +
Sbjct: 37 RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 201 PLPNEQSRMEILKIHA 216
P PNE++R++ILKIH+
Sbjct: 1 PPPNEEARLDILKIHS 16
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 73 GPPGTGKTLLARAIASNI-------DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ 125
G PGTGKT +A A + + + V ++ +YIG +A +E+ A
Sbjct: 74 GNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---X 130
Query: 126 PCIIFMDE 133
++F+DE
Sbjct: 131 GGVLFIDE 138
>pdb|2R44|A Chain A, Crystal Structure Of A Putative Atpase (Chu_0153) From
Cytophaga Hutchinsonii Atcc 33406 At 2.00 A Resolution
Length = 331
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 59 LRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97
L +GI +LL G PG KTL +A D +F ++
Sbjct: 39 LLIGICTGGHILLEGVPGLAKTLSVNTLAKTXDLDFHRI 77
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|B Chain B, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVI|A Chain A, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
pdb|3NVI|C Chain C, Structure Of N-Terminal Truncated Nop5658 BOUND WITH L7AE
AND BOX CD Rna
Length = 379
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 59 LRVGIKPPKGVLLYGPPGTGKT------LLARAIASNIDANFLKVVSSAIIDKYIGE 109
LR G KPPK ++Y P ++ +ARA+A K+ +A +D + GE
Sbjct: 309 LRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAG-------KLAIAARVDYFSGE 358
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|C Chain C, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
Length = 376
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 59 LRVGIKPPKGVLLYGPPGTGKT------LLARAIASNIDANFLKVVSSAIIDKYIGE 109
LR G KPPK ++Y P ++ +ARA+A K+ +A +D + GE
Sbjct: 309 LRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAG-------KLAIAARVDYFSGE 358
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|F Chain F, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 376
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 59 LRVGIKPPKGVLLYGPPGTGKT------LLARAIASNIDANFLKVVSSAIIDKYIGE 109
LR G KPPK ++Y P ++ +ARA+A K+ +A +D + GE
Sbjct: 309 LRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAG-------KLAIAARVDYFSGE 358
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 371
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 59 LRVGIKPPKGVLLYGPPGTGKT------LLARAIASNIDANFLKVVSSAIIDKYIGE 109
LR G KPPK ++Y P ++ +ARA+A K+ +A +D + GE
Sbjct: 301 LRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAG-------KLAIAARVDYFSGE 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,002,149
Number of Sequences: 62578
Number of extensions: 289317
Number of successful extensions: 1225
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 178
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)