Query 026258
Match_columns 241
No_of_seqs 145 out of 2054
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 8.4E-51 1.8E-55 331.5 21.7 237 2-238 121-357 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-41 4.2E-46 294.8 20.3 230 6-239 409-638 (693)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 3E-40 6.4E-45 284.6 20.7 228 4-235 484-713 (802)
4 KOG0727 26S proteasome regulat 100.0 5.2E-39 1.1E-43 251.8 17.5 228 6-233 129-356 (408)
5 KOG0728 26S proteasome regulat 100.0 2E-38 4.4E-43 248.2 19.4 234 5-238 120-353 (404)
6 PTZ00454 26S protease regulato 100.0 4.9E-38 1.1E-42 269.8 23.6 237 2-238 115-351 (398)
7 KOG0652 26S proteasome regulat 100.0 1.3E-38 2.8E-43 250.7 17.9 233 5-237 144-376 (424)
8 KOG0729 26S proteasome regulat 100.0 1.1E-38 2.4E-43 251.7 15.3 231 4-234 149-379 (435)
9 KOG0651 26S proteasome regulat 100.0 7.2E-38 1.6E-42 251.1 14.7 236 1-237 102-337 (388)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 2.6E-37 5.6E-42 266.5 18.4 212 22-237 180-395 (802)
11 PRK03992 proteasome-activating 100.0 1.7E-36 3.6E-41 261.2 23.0 236 3-238 102-337 (389)
12 PTZ00361 26 proteosome regulat 100.0 2.8E-36 6.1E-41 260.5 20.1 236 3-238 154-389 (438)
13 KOG0734 AAA+-type ATPase conta 100.0 1.3E-36 2.8E-41 258.7 16.7 208 26-237 298-505 (752)
14 KOG0736 Peroxisome assembly fa 100.0 4.7E-36 1E-40 264.2 20.0 230 4-235 644-876 (953)
15 KOG0726 26S proteasome regulat 100.0 9E-37 2E-41 243.3 13.6 225 8-232 161-385 (440)
16 TIGR01242 26Sp45 26S proteasom 100.0 1.6E-34 3.5E-39 247.7 21.9 236 3-238 93-328 (364)
17 KOG0738 AAA+-type ATPase [Post 100.0 2.7E-35 5.9E-40 242.6 15.9 211 24-239 204-418 (491)
18 KOG0739 AAA+-type ATPase [Post 100.0 2.4E-35 5.2E-40 235.7 14.1 217 17-239 118-336 (439)
19 COG1223 Predicted ATPase (AAA+ 100.0 8.7E-35 1.9E-39 228.6 15.3 206 25-238 114-319 (368)
20 TIGR01243 CDC48 AAA family ATP 100.0 5E-33 1.1E-37 257.3 23.2 213 24-238 445-657 (733)
21 KOG0735 AAA+-type ATPase [Post 100.0 8.4E-33 1.8E-37 242.0 20.5 234 2-238 637-870 (952)
22 KOG0731 AAA+-type ATPase conta 100.0 5.9E-33 1.3E-37 248.2 19.3 213 24-237 303-517 (774)
23 TIGR01241 FtsH_fam ATP-depende 100.0 2.1E-32 4.5E-37 243.1 20.1 215 23-238 46-260 (495)
24 COG0464 SpoVK ATPases of the A 100.0 1.4E-31 3E-36 238.3 21.1 215 21-238 231-447 (494)
25 COG0465 HflB ATP-dependent Zn 100.0 8.6E-32 1.9E-36 236.8 18.7 225 13-238 131-355 (596)
26 TIGR03689 pup_AAA proteasome A 100.0 2.2E-31 4.7E-36 233.2 19.0 200 17-218 167-380 (512)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 8.3E-31 1.8E-35 229.7 22.2 211 21-238 217-429 (489)
28 KOG0737 AAA+-type ATPase [Post 100.0 1.2E-31 2.5E-36 220.4 14.0 211 24-239 84-297 (386)
29 CHL00176 ftsH cell division pr 100.0 8.6E-31 1.9E-35 236.1 19.0 213 24-237 175-387 (638)
30 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-28 2.4E-33 228.4 21.3 210 26-238 172-381 (733)
31 KOG0740 AAA+-type ATPase [Post 100.0 5.7E-29 1.2E-33 211.1 15.1 223 14-240 135-358 (428)
32 PRK10733 hflB ATP-dependent me 100.0 3.4E-28 7.4E-33 221.2 20.4 212 25-237 145-356 (644)
33 PLN00020 ribulose bisphosphate 100.0 1.7E-27 3.6E-32 198.0 19.1 202 27-236 110-327 (413)
34 KOG0730 AAA+-type ATPase [Post 99.9 3.5E-26 7.6E-31 199.9 16.8 206 27-238 180-386 (693)
35 KOG0732 AAA+-type ATPase conta 99.9 4.2E-26 9E-31 209.4 16.5 205 26-235 259-468 (1080)
36 CHL00206 ycf2 Ycf2; Provisiona 99.9 3.8E-25 8.3E-30 211.3 18.0 177 53-238 1617-1842(2281)
37 KOG0741 AAA+-type ATPase [Post 99.9 3.4E-24 7.5E-29 183.1 11.1 215 18-238 208-440 (744)
38 PF00004 AAA: ATPase family as 99.9 1E-21 2.2E-26 144.6 14.5 130 69-202 1-132 (132)
39 PF05496 RuvB_N: Holliday junc 99.9 2.3E-21 5.1E-26 151.7 16.6 182 25-237 17-211 (233)
40 TIGR02881 spore_V_K stage V sp 99.9 2.2E-21 4.8E-26 159.3 17.2 190 30-235 4-208 (261)
41 KOG0743 AAA+-type ATPase [Post 99.9 2E-21 4.4E-26 164.3 13.7 186 26-219 195-386 (457)
42 TIGR02880 cbbX_cfxQ probable R 99.9 1.2E-20 2.7E-25 156.3 17.1 189 33-236 23-226 (284)
43 CHL00181 cbbX CbbX; Provisiona 99.9 8.1E-21 1.8E-25 157.3 15.7 175 33-220 24-213 (287)
44 PRK07003 DNA polymerase III su 99.9 1.9E-20 4.1E-25 168.5 16.8 183 19-240 3-213 (830)
45 PRK14956 DNA polymerase III su 99.8 4.5E-20 9.8E-25 160.1 16.4 183 19-240 5-215 (484)
46 PRK12323 DNA polymerase III su 99.8 2.3E-20 5E-25 165.9 13.7 180 19-237 3-215 (700)
47 TIGR02639 ClpA ATP-dependent C 99.8 5.9E-20 1.3E-24 170.2 16.7 189 27-240 177-384 (731)
48 KOG0744 AAA+-type ATPase [Post 99.8 5.7E-21 1.2E-25 154.9 8.7 186 31-218 141-342 (423)
49 KOG0735 AAA+-type ATPase [Post 99.8 7.9E-20 1.7E-24 161.2 15.3 194 32-238 408-609 (952)
50 KOG0989 Replication factor C, 99.8 5.3E-20 1.2E-24 148.5 12.8 183 21-240 25-223 (346)
51 TIGR00635 ruvB Holliday juncti 99.8 3.4E-19 7.4E-24 149.7 17.9 178 30-238 2-192 (305)
52 PRK00080 ruvB Holliday junctio 99.8 3.5E-19 7.7E-24 150.9 17.5 186 23-239 16-214 (328)
53 PRK14962 DNA polymerase III su 99.8 3E-19 6.4E-24 156.9 16.9 180 22-240 4-211 (472)
54 PLN03025 replication factor C 99.8 3.1E-19 6.7E-24 150.7 16.0 182 22-240 3-193 (319)
55 PRK07994 DNA polymerase III su 99.8 3.4E-19 7.3E-24 160.4 16.8 180 19-237 3-210 (647)
56 PRK14960 DNA polymerase III su 99.8 3.1E-19 6.7E-24 159.2 16.3 182 19-239 2-211 (702)
57 PRK14958 DNA polymerase III su 99.8 2.6E-19 5.6E-24 158.7 14.6 181 19-238 3-211 (509)
58 PRK04195 replication factor C 99.8 4.4E-19 9.6E-24 157.4 16.1 186 21-240 3-195 (482)
59 COG2256 MGS1 ATPase related to 99.8 4.3E-19 9.3E-24 148.1 14.7 172 27-239 19-204 (436)
60 PHA02544 44 clamp loader, smal 99.8 1E-18 2.2E-23 147.5 17.1 188 20-240 9-202 (316)
61 PRK14949 DNA polymerase III su 99.8 7.1E-19 1.5E-23 161.1 17.0 188 19-239 3-212 (944)
62 PRK14961 DNA polymerase III su 99.8 6.7E-19 1.5E-23 151.0 16.0 182 19-239 3-212 (363)
63 COG2255 RuvB Holliday junction 99.8 5.8E-19 1.3E-23 141.2 14.1 185 21-236 15-212 (332)
64 KOG0736 Peroxisome assembly fa 99.8 5.2E-19 1.1E-23 157.2 14.6 169 65-238 430-598 (953)
65 COG0466 Lon ATP-dependent Lon 99.8 7.1E-19 1.5E-23 155.8 15.2 191 32-240 323-540 (782)
66 TIGR00763 lon ATP-dependent pr 99.8 9.1E-19 2E-23 163.1 15.9 189 33-239 321-536 (775)
67 PRK12402 replication factor C 99.8 5.2E-18 1.1E-22 144.3 18.7 186 20-239 3-218 (337)
68 PRK14951 DNA polymerase III su 99.8 1.3E-18 2.7E-23 156.4 15.4 183 18-239 2-217 (618)
69 PRK08691 DNA polymerase III su 99.8 1.5E-18 3.2E-23 156.0 15.6 182 19-239 3-212 (709)
70 PRK06645 DNA polymerase III su 99.8 3E-18 6.5E-23 151.2 17.2 189 17-238 6-220 (507)
71 PRK11034 clpA ATP-dependent Cl 99.8 1.7E-18 3.7E-23 159.3 16.2 188 28-240 182-388 (758)
72 PRK14964 DNA polymerase III su 99.8 2.7E-18 5.8E-23 150.5 16.0 179 22-239 3-209 (491)
73 PRK07764 DNA polymerase III su 99.8 2.6E-18 5.6E-23 159.1 16.2 185 19-238 2-212 (824)
74 PRK14952 DNA polymerase III su 99.8 4.7E-18 1E-22 152.2 17.2 183 22-239 3-211 (584)
75 PRK14957 DNA polymerase III su 99.8 5.6E-18 1.2E-22 150.4 17.1 186 19-239 3-212 (546)
76 TIGR03345 VI_ClpV1 type VI sec 99.8 4.1E-18 8.9E-23 159.3 17.1 189 27-241 182-390 (852)
77 PRK14969 DNA polymerase III su 99.8 2.3E-18 5E-23 153.6 14.3 181 19-238 3-211 (527)
78 PRK14963 DNA polymerase III su 99.8 8.5E-18 1.8E-22 148.8 17.7 180 22-240 4-210 (504)
79 KOG0742 AAA+-type ATPase [Post 99.8 3.7E-18 7.9E-23 142.7 13.8 184 25-220 348-532 (630)
80 TIGR02902 spore_lonB ATP-depen 99.8 2.7E-18 5.9E-23 153.5 13.5 208 2-238 35-296 (531)
81 PRK05563 DNA polymerase III su 99.8 7.3E-18 1.6E-22 151.3 16.2 182 19-239 3-212 (559)
82 PRK10865 protein disaggregatio 99.8 1.1E-17 2.3E-22 156.9 17.7 187 27-239 173-379 (857)
83 PRK05896 DNA polymerase III su 99.8 8.7E-18 1.9E-22 149.6 15.5 181 19-238 3-211 (605)
84 PRK14965 DNA polymerase III su 99.8 6.2E-18 1.3E-22 152.4 14.8 182 19-239 3-212 (576)
85 PRK13342 recombination factor 99.8 1.7E-17 3.7E-22 144.7 16.6 174 24-238 4-187 (413)
86 CHL00095 clpC Clp protease ATP 99.8 1E-17 2.3E-22 156.9 16.1 187 28-240 175-380 (821)
87 KOG2004 Mitochondrial ATP-depe 99.8 6.3E-18 1.4E-22 149.4 12.8 189 32-239 411-627 (906)
88 PRK14959 DNA polymerase III su 99.8 1.7E-17 3.7E-22 148.4 15.5 184 20-239 4-212 (624)
89 TIGR03346 chaperone_ClpB ATP-d 99.8 2.9E-17 6.4E-22 154.4 17.7 189 27-241 168-376 (852)
90 PRK07133 DNA polymerase III su 99.8 2.5E-17 5.4E-22 149.3 16.5 188 18-238 4-210 (725)
91 PRK07940 DNA polymerase III su 99.8 4.2E-17 9E-22 140.3 17.0 159 29-214 2-187 (394)
92 PRK14970 DNA polymerase III su 99.7 6.5E-17 1.4E-21 139.2 16.7 185 18-239 3-201 (367)
93 TIGR02397 dnaX_nterm DNA polym 99.7 5E-17 1.1E-21 139.3 15.6 180 21-239 3-210 (355)
94 PRK14953 DNA polymerase III su 99.7 5.4E-17 1.2E-21 143.3 16.1 188 19-239 3-212 (486)
95 PRK09111 DNA polymerase III su 99.7 7.9E-17 1.7E-21 145.0 17.3 192 14-238 6-224 (598)
96 PRK06305 DNA polymerase III su 99.7 9.5E-17 2.1E-21 140.8 17.0 182 19-239 4-214 (451)
97 PRK08451 DNA polymerase III su 99.7 1E-16 2.2E-21 141.8 17.0 179 22-239 4-210 (535)
98 PRK06647 DNA polymerase III su 99.7 7.7E-17 1.7E-21 144.4 15.7 182 19-239 3-212 (563)
99 COG2812 DnaX DNA polymerase II 99.7 1.9E-17 4E-22 144.9 11.3 190 19-239 3-215 (515)
100 PRK14948 DNA polymerase III su 99.7 1.4E-16 3E-21 144.3 17.2 189 19-240 3-215 (620)
101 PRK00440 rfc replication facto 99.7 1.5E-16 3.2E-21 134.4 16.4 186 19-240 4-196 (319)
102 PF00308 Bac_DnaA: Bacterial d 99.7 1.1E-16 2.4E-21 127.9 14.1 185 27-240 3-201 (219)
103 TIGR00362 DnaA chromosomal rep 99.7 2.2E-16 4.9E-21 137.5 16.4 185 26-239 104-302 (405)
104 PF05673 DUF815: Protein of un 99.7 5.1E-16 1.1E-20 123.3 16.8 177 24-231 19-220 (249)
105 PRK06893 DNA replication initi 99.7 3.2E-16 7E-21 126.2 15.5 181 25-240 9-196 (229)
106 PRK14955 DNA polymerase III su 99.7 1.3E-16 2.8E-21 138.3 14.1 188 19-239 3-220 (397)
107 PRK00149 dnaA chromosomal repl 99.7 2E-16 4.4E-21 139.4 15.4 186 26-240 116-315 (450)
108 PRK08084 DNA replication initi 99.7 6.1E-16 1.3E-20 125.1 16.8 177 25-240 15-202 (235)
109 PRK08727 hypothetical protein; 99.7 7.8E-16 1.7E-20 124.3 17.3 175 26-240 13-197 (233)
110 PRK14954 DNA polymerase III su 99.7 5E-16 1.1E-20 140.1 17.2 188 19-239 3-220 (620)
111 PRK14088 dnaA chromosomal repl 99.7 2.8E-16 6.1E-21 137.6 14.7 185 26-239 99-297 (440)
112 PRK13341 recombination factor 99.7 2.7E-16 5.9E-21 144.2 14.9 182 22-240 18-210 (725)
113 TIGR02928 orc1/cdc6 family rep 99.7 8.4E-16 1.8E-20 132.2 17.0 182 32-235 15-231 (365)
114 PTZ00112 origin recognition co 99.7 1E-15 2.2E-20 139.4 17.9 182 32-238 755-969 (1164)
115 PRK10787 DNA-binding ATP-depen 99.7 5.2E-16 1.1E-20 143.9 16.1 188 33-239 323-537 (784)
116 PRK14950 DNA polymerase III su 99.7 6.9E-16 1.5E-20 139.7 16.4 180 20-238 4-212 (585)
117 PRK08903 DnaA regulatory inact 99.7 1.2E-15 2.6E-20 122.9 15.8 168 26-237 12-189 (227)
118 PRK14086 dnaA chromosomal repl 99.7 2.3E-15 4.9E-20 134.3 17.1 186 26-240 282-481 (617)
119 PRK12422 chromosomal replicati 99.7 2E-15 4.4E-20 132.1 16.1 190 26-240 105-306 (445)
120 PRK14971 DNA polymerase III su 99.7 2E-15 4.4E-20 136.7 16.6 181 20-239 5-214 (614)
121 TIGR02640 gas_vesic_GvpN gas v 99.7 4.7E-15 1E-19 121.8 16.4 137 65-216 20-198 (262)
122 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.4E-15 5.1E-20 121.0 14.4 173 26-238 9-192 (226)
123 COG0542 clpA ATP-binding subun 99.7 2E-15 4.2E-20 137.2 15.3 190 27-241 165-373 (786)
124 PRK00411 cdc6 cell division co 99.7 7.2E-15 1.6E-19 127.7 18.2 187 29-237 27-241 (394)
125 KOG0991 Replication factor C, 99.7 8.5E-16 1.8E-20 120.0 10.6 180 22-236 17-206 (333)
126 TIGR02903 spore_lon_C ATP-depe 99.6 3.6E-15 7.7E-20 135.5 15.2 186 25-239 147-387 (615)
127 PRK11034 clpA ATP-dependent Cl 99.6 4.4E-15 9.6E-20 136.9 16.0 182 33-235 459-692 (758)
128 cd00009 AAA The AAA+ (ATPases 99.6 1.2E-14 2.6E-19 108.1 14.7 141 35-201 1-150 (151)
129 PRK05642 DNA replication initi 99.6 2.6E-14 5.6E-19 115.5 17.6 148 66-240 45-201 (234)
130 PRK14087 dnaA chromosomal repl 99.6 1.4E-14 3.1E-19 127.1 16.9 158 66-240 141-312 (450)
131 PRK05342 clpX ATP-dependent pr 99.6 1.4E-14 3E-19 125.3 16.6 205 30-236 68-356 (412)
132 COG1474 CDC6 Cdc6-related prot 99.6 1.2E-14 2.5E-19 124.1 15.6 183 32-238 17-225 (366)
133 PRK06620 hypothetical protein; 99.6 1.3E-14 2.8E-19 115.5 14.3 165 26-240 10-182 (214)
134 TIGR02639 ClpA ATP-dependent C 99.6 1.6E-14 3.6E-19 134.1 17.0 181 33-236 455-689 (731)
135 TIGR01650 PD_CobS cobaltochela 99.6 2.9E-15 6.2E-20 124.6 10.4 140 65-218 63-235 (327)
136 PRK09112 DNA polymerase III su 99.6 7.5E-14 1.6E-18 118.7 19.3 179 24-237 15-230 (351)
137 PRK05564 DNA polymerase III su 99.6 5.1E-14 1.1E-18 118.7 17.0 152 30-216 2-165 (313)
138 COG2607 Predicted ATPase (AAA+ 99.6 8E-14 1.7E-18 109.4 16.5 171 24-223 52-246 (287)
139 PHA02244 ATPase-like protein 99.6 5.5E-14 1.2E-18 118.3 16.7 157 64-236 117-306 (383)
140 PRK13407 bchI magnesium chelat 99.6 2.1E-14 4.5E-19 120.9 14.2 164 27-216 3-216 (334)
141 KOG2028 ATPase related to the 99.6 4.9E-15 1.1E-19 122.6 10.0 177 26-238 132-327 (554)
142 KOG2035 Replication factor C, 99.6 7.8E-14 1.7E-18 111.5 16.2 185 22-240 3-221 (351)
143 TIGR00390 hslU ATP-dependent p 99.6 2E-14 4.4E-19 122.6 13.4 178 34-213 14-343 (441)
144 PRK07471 DNA polymerase III su 99.6 1.3E-13 2.8E-18 117.8 18.4 161 25-216 12-213 (365)
145 CHL00081 chlI Mg-protoporyphyr 99.6 2.2E-14 4.7E-19 121.1 12.3 168 21-216 6-232 (350)
146 TIGR00382 clpX endopeptidase C 99.6 1E-13 2.3E-18 119.4 16.4 201 34-236 79-362 (413)
147 COG3829 RocR Transcriptional r 99.6 2.4E-14 5.3E-19 124.2 12.3 185 25-240 238-463 (560)
148 KOG1969 DNA replication checkp 99.6 1.6E-13 3.6E-18 122.1 17.6 202 21-241 260-504 (877)
149 TIGR00678 holB DNA polymerase 99.6 2.1E-13 4.6E-18 106.6 16.1 143 65-239 13-183 (188)
150 COG0593 DnaA ATPase involved i 99.6 6.7E-14 1.5E-18 119.5 14.2 185 25-239 80-278 (408)
151 COG0542 clpA ATP-binding subun 99.6 1.8E-14 3.9E-19 131.0 10.8 181 33-236 492-732 (786)
152 PRK05201 hslU ATP-dependent pr 99.6 4.5E-14 9.7E-19 120.6 12.1 202 34-237 17-380 (443)
153 PRK10865 protein disaggregatio 99.6 1.7E-13 3.6E-18 128.9 17.2 182 32-236 568-806 (857)
154 PRK09087 hypothetical protein; 99.6 8.9E-14 1.9E-18 111.6 12.8 165 26-240 15-188 (226)
155 TIGR03345 VI_ClpV1 type VI sec 99.5 1.9E-13 4.1E-18 128.2 15.5 182 32-237 566-809 (852)
156 PRK07399 DNA polymerase III su 99.5 2.8E-13 6E-18 113.7 14.6 174 30-237 2-214 (314)
157 COG0470 HolB ATPase involved i 99.5 2.5E-13 5.4E-18 114.9 14.4 149 33-213 2-178 (325)
158 TIGR03346 chaperone_ClpB ATP-d 99.5 6.4E-13 1.4E-17 125.3 18.1 185 32-237 565-804 (852)
159 COG2204 AtoC Response regulato 99.5 1.4E-13 3.1E-18 119.1 12.4 182 28-240 137-358 (464)
160 COG0714 MoxR-like ATPases [Gen 99.5 1.4E-13 3E-18 116.8 12.0 153 34-214 26-201 (329)
161 PRK11608 pspF phage shock prot 99.5 2.1E-13 4.5E-18 115.4 12.6 181 30-240 4-224 (326)
162 CHL00095 clpC Clp protease ATP 99.5 5.6E-13 1.2E-17 125.3 15.0 182 32-236 509-759 (821)
163 TIGR02974 phageshock_pspF psp 99.5 5.1E-13 1.1E-17 113.0 13.2 177 34-240 1-217 (329)
164 PRK08058 DNA polymerase III su 99.5 7.8E-13 1.7E-17 112.1 14.2 149 30-214 3-180 (329)
165 TIGR02030 BchI-ChlI magnesium 99.5 3.6E-13 7.9E-18 113.7 11.8 161 30-216 2-219 (337)
166 TIGR00602 rad24 checkpoint pro 99.5 1E-12 2.3E-17 118.7 15.3 198 20-240 72-316 (637)
167 TIGR01817 nifA Nif-specific re 99.5 4E-13 8.7E-18 121.0 11.6 184 27-240 191-412 (534)
168 PF13177 DNA_pol3_delta2: DNA 99.5 1.9E-12 4.2E-17 98.7 13.7 134 36-203 1-161 (162)
169 COG3604 FhlA Transcriptional r 99.5 6.3E-13 1.4E-17 114.2 11.8 183 27-240 218-440 (550)
170 PRK13531 regulatory ATPase Rav 99.4 3E-12 6.5E-17 111.5 15.2 155 33-215 21-193 (498)
171 PF06068 TIP49: TIP49 C-termin 99.4 2.1E-12 4.5E-17 108.1 13.6 89 126-236 279-379 (398)
172 PF00158 Sigma54_activat: Sigm 99.4 2.6E-12 5.6E-17 98.4 13.2 120 34-181 1-144 (168)
173 PF01078 Mg_chelatase: Magnesi 99.4 9.6E-14 2.1E-18 108.2 5.3 124 30-180 1-158 (206)
174 PRK11388 DNA-binding transcrip 99.4 2E-12 4.4E-17 118.9 15.0 182 28-240 321-538 (638)
175 COG1224 TIP49 DNA helicase TIP 99.4 9E-12 1.9E-16 103.1 16.9 89 126-236 292-392 (450)
176 COG1221 PspF Transcriptional r 99.4 8.9E-13 1.9E-17 112.4 11.3 186 26-240 72-293 (403)
177 PRK05022 anaerobic nitric oxid 99.4 2.3E-12 5.1E-17 115.3 14.5 180 30-240 185-404 (509)
178 PRK10820 DNA-binding transcrip 99.4 1.7E-12 3.6E-17 116.4 13.5 185 26-240 198-421 (520)
179 PRK05707 DNA polymerase III su 99.4 4E-12 8.6E-17 107.3 14.5 130 64-215 20-177 (328)
180 PRK15424 propionate catabolism 99.4 1.6E-12 3.5E-17 115.8 12.5 181 29-240 216-449 (538)
181 PRK04132 replication factor C 99.4 3.5E-12 7.6E-17 118.2 15.0 153 65-240 563-724 (846)
182 TIGR02442 Cob-chelat-sub cobal 99.4 7.9E-13 1.7E-17 120.9 10.4 161 30-216 2-214 (633)
183 COG0464 SpoVK ATPases of the A 99.4 7.5E-12 1.6E-16 111.9 16.4 182 51-237 3-184 (494)
184 TIGR02329 propionate_PrpR prop 99.4 2.8E-12 6.1E-17 114.4 13.0 184 27-240 207-434 (526)
185 PF07728 AAA_5: AAA domain (dy 99.4 7.8E-13 1.7E-17 98.3 8.0 112 68-194 1-139 (139)
186 PRK15429 formate hydrogenlyase 99.4 7.3E-12 1.6E-16 116.0 16.0 188 28-240 372-593 (686)
187 KOG0990 Replication factor C, 99.4 1.2E-12 2.6E-17 106.8 9.0 171 16-221 25-208 (360)
188 COG1239 ChlI Mg-chelatase subu 99.4 5E-12 1.1E-16 107.1 12.7 164 28-217 13-233 (423)
189 PRK06871 DNA polymerase III su 99.4 2.3E-11 4.9E-16 102.2 15.5 143 38-215 8-178 (325)
190 PF07724 AAA_2: AAA domain (Cd 99.4 2.2E-12 4.8E-17 99.1 7.6 116 66-181 3-130 (171)
191 smart00382 AAA ATPases associa 99.4 2.1E-11 4.7E-16 89.6 12.7 123 66-203 2-147 (148)
192 PRK07993 DNA polymerase III su 99.4 4.9E-11 1.1E-15 101.0 16.3 146 38-214 8-178 (334)
193 smart00763 AAA_PrkA PrkA AAA d 99.4 6.4E-11 1.4E-15 99.8 16.7 62 30-99 48-118 (361)
194 COG1220 HslU ATP-dependent pro 99.3 2.1E-11 4.5E-16 100.3 12.1 111 126-238 251-382 (444)
195 PRK08769 DNA polymerase III su 99.3 1.3E-10 2.9E-15 97.4 17.1 146 38-214 10-183 (319)
196 PRK06090 DNA polymerase III su 99.3 8.5E-11 1.8E-15 98.5 15.8 144 37-214 8-178 (319)
197 PRK06964 DNA polymerase III su 99.3 6.4E-11 1.4E-15 100.1 14.9 133 64-215 19-203 (342)
198 PRK08116 hypothetical protein; 99.3 3E-11 6.6E-16 99.4 12.3 145 36-205 92-251 (268)
199 PF07726 AAA_3: ATPase family 99.3 1.3E-11 2.8E-16 88.7 8.8 111 68-194 1-129 (131)
200 PRK11331 5-methylcytosine-spec 99.3 4.3E-11 9.3E-16 103.5 12.9 144 31-202 174-357 (459)
201 PRK12377 putative replication 99.3 6.4E-11 1.4E-15 96.0 12.3 129 27-181 69-206 (248)
202 TIGR02031 BchD-ChlD magnesium 99.3 6.4E-11 1.4E-15 107.4 12.8 137 67-216 17-174 (589)
203 PRK08699 DNA polymerase III su 99.3 1.2E-10 2.7E-15 98.2 13.7 132 64-214 19-183 (325)
204 TIGR00368 Mg chelatase-related 99.3 3.1E-11 6.8E-16 107.0 10.1 151 28-206 188-394 (499)
205 TIGR02915 PEP_resp_reg putativ 99.3 6.4E-11 1.4E-15 104.6 12.0 180 30-240 137-356 (445)
206 smart00350 MCM minichromosome 99.3 5.2E-11 1.1E-15 106.5 11.3 170 33-216 204-400 (509)
207 PRK08181 transposase; Validate 99.2 1E-10 2.2E-15 95.9 12.0 134 65-216 105-255 (269)
208 PF14532 Sigma54_activ_2: Sigm 99.2 2.4E-11 5.3E-16 90.2 6.6 107 35-181 1-110 (138)
209 PRK06835 DNA replication prote 99.2 1.2E-10 2.7E-15 98.1 11.2 124 66-206 183-320 (329)
210 KOG0741 AAA+-type ATPase [Post 99.2 2E-10 4.4E-15 99.5 12.5 143 65-213 537-683 (744)
211 TIGR00764 lon_rel lon-related 99.2 2.6E-10 5.6E-15 103.7 13.4 54 25-93 11-64 (608)
212 COG1116 TauB ABC-type nitrate/ 99.2 6.9E-11 1.5E-15 94.0 7.7 110 60-182 23-192 (248)
213 COG1219 ClpX ATP-dependent pro 99.2 2.4E-11 5.3E-16 99.2 5.2 132 30-162 58-202 (408)
214 KOG1942 DNA helicase, TBP-inte 99.2 1.3E-09 2.7E-14 88.5 14.8 88 126-235 297-397 (456)
215 PRK10923 glnG nitrogen regulat 99.2 2.2E-10 4.7E-15 101.9 11.1 181 30-240 136-355 (469)
216 PF13173 AAA_14: AAA domain 99.2 4.5E-10 9.8E-15 82.3 10.8 118 67-207 3-126 (128)
217 PRK06526 transposase; Provisio 99.1 2.7E-10 5.8E-15 92.9 9.1 102 64-181 96-201 (254)
218 TIGR03015 pepcterm_ATPase puta 99.1 5.9E-09 1.3E-13 85.9 17.3 157 66-237 43-228 (269)
219 PRK07952 DNA replication prote 99.1 1.1E-09 2.5E-14 88.5 12.5 129 27-181 67-205 (244)
220 PF01637 Arch_ATPase: Archaeal 99.1 4.7E-10 1E-14 90.0 10.0 161 34-219 1-207 (234)
221 PRK09862 putative ATP-dependen 99.1 3E-10 6.6E-15 100.5 9.3 150 29-206 188-391 (506)
222 PF03215 Rad17: Rad17 cell cyc 99.1 3.2E-09 7E-14 94.5 15.7 202 19-241 6-257 (519)
223 PRK11361 acetoacetate metaboli 99.1 1E-09 2.2E-14 97.3 12.4 179 31-240 142-360 (457)
224 PRK13765 ATP-dependent proteas 99.1 1.8E-09 3.8E-14 98.2 13.3 52 25-91 24-75 (637)
225 KOG1514 Origin recognition com 99.1 2.6E-09 5.6E-14 95.5 13.7 164 33-219 397-592 (767)
226 PRK05917 DNA polymerase III su 99.1 8.4E-09 1.8E-13 85.1 15.6 118 64-203 17-154 (290)
227 PRK15115 response regulator Gl 99.1 1.2E-09 2.7E-14 96.4 11.4 177 33-240 135-351 (444)
228 COG0606 Predicted ATPase with 99.1 3.1E-11 6.7E-16 103.8 0.9 48 28-90 175-222 (490)
229 COG1484 DnaC DNA replication p 99.1 1.6E-09 3.4E-14 88.5 10.7 102 65-181 104-209 (254)
230 PRK09183 transposase/IS protei 99.1 1E-09 2.2E-14 89.9 9.7 103 64-181 100-206 (259)
231 PTZ00111 DNA replication licen 99.0 1.2E-09 2.7E-14 101.3 10.4 169 33-215 451-656 (915)
232 KOG1051 Chaperone HSP104 and r 99.0 3.9E-09 8.5E-14 97.9 13.5 127 33-180 563-710 (898)
233 TIGR01818 ntrC nitrogen regula 99.0 1.6E-09 3.5E-14 96.2 10.6 179 32-240 134-351 (463)
234 KOG2227 Pre-initiation complex 99.0 5.9E-09 1.3E-13 89.4 13.1 186 30-237 148-361 (529)
235 PRK08939 primosomal protein Dn 99.0 3.8E-09 8.2E-14 88.5 11.8 102 65-181 155-261 (306)
236 COG3283 TyrR Transcriptional r 99.0 3.2E-09 7E-14 88.3 11.0 192 17-240 188-416 (511)
237 PRK06921 hypothetical protein; 99.0 4E-09 8.6E-14 86.8 11.6 105 65-181 116-225 (266)
238 PF01695 IstB_IS21: IstB-like 99.0 4E-10 8.7E-15 87.2 5.4 102 64-181 45-150 (178)
239 PF12774 AAA_6: Hydrolytic ATP 99.0 2.3E-08 5E-13 80.4 13.9 126 66-212 32-176 (231)
240 PF05729 NACHT: NACHT domain 99.0 1.2E-08 2.7E-13 77.4 11.7 140 68-218 2-165 (166)
241 PF13401 AAA_22: AAA domain; P 99.0 8.5E-09 1.8E-13 75.5 10.4 98 66-180 4-125 (131)
242 PF05621 TniB: Bacterial TniB 98.9 5.4E-08 1.2E-12 80.1 15.2 170 38-231 43-244 (302)
243 KOG0745 Putative ATP-dependent 98.9 4.5E-09 9.8E-14 89.3 8.7 97 66-162 226-331 (564)
244 PF12775 AAA_7: P-loop contain 98.9 4.4E-09 9.6E-14 86.7 7.8 141 64-218 31-195 (272)
245 PLN03210 Resistant to P. syrin 98.9 7.7E-08 1.7E-12 94.2 17.1 158 27-218 179-366 (1153)
246 PRK05818 DNA polymerase III su 98.9 6.7E-08 1.5E-12 78.2 13.3 120 64-203 5-147 (261)
247 COG1126 GlnQ ABC-type polar am 98.9 8E-09 1.7E-13 80.5 7.4 51 117-181 146-196 (240)
248 COG2884 FtsE Predicted ATPase 98.9 2.7E-08 5.8E-13 76.1 10.0 53 118-184 148-200 (223)
249 cd01120 RecA-like_NTPases RecA 98.9 1.9E-08 4.1E-13 76.1 9.4 110 69-182 2-138 (165)
250 KOG1970 Checkpoint RAD17-RFC c 98.9 1.8E-07 3.9E-12 81.9 16.2 206 18-241 68-309 (634)
251 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 7E-09 1.5E-13 83.6 7.1 57 115-185 147-203 (254)
252 PRK07276 DNA polymerase III su 98.8 1.1E-07 2.4E-12 78.7 14.1 144 36-213 6-172 (290)
253 PRK10365 transcriptional regul 98.8 2.6E-08 5.6E-13 87.9 10.2 157 64-240 160-356 (441)
254 COG1136 SalX ABC-type antimicr 98.8 2.2E-08 4.9E-13 79.4 8.2 52 118-182 153-204 (226)
255 PF14516 AAA_35: AAA-like doma 98.8 9.5E-07 2.1E-11 75.1 18.6 162 36-216 15-214 (331)
256 cd03222 ABC_RNaseL_inhibitor T 98.8 7.5E-08 1.6E-12 74.4 10.9 108 63-183 22-134 (177)
257 cd03216 ABC_Carb_Monos_I This 98.8 7E-08 1.5E-12 73.7 10.6 110 60-183 20-144 (163)
258 PRK07132 DNA polymerase III su 98.8 2.5E-07 5.4E-12 77.2 14.4 126 65-214 17-160 (299)
259 COG1120 FepC ABC-type cobalami 98.8 9.1E-08 2E-12 77.5 11.3 84 115-214 146-234 (258)
260 COG1125 OpuBA ABC-type proline 98.8 2.6E-08 5.5E-13 79.6 7.2 31 60-90 21-51 (309)
261 KOG1968 Replication factor C, 98.8 3.3E-08 7.2E-13 92.3 9.1 203 20-241 308-525 (871)
262 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 1.4E-07 3E-12 70.5 10.7 107 60-183 20-129 (144)
263 KOG2228 Origin recognition com 98.7 1.6E-07 3.4E-12 77.8 11.4 161 33-216 25-219 (408)
264 KOG2680 DNA helicase TIP49, TB 98.7 5.1E-07 1.1E-11 73.8 14.0 87 126-234 289-387 (454)
265 cd03238 ABC_UvrA The excision 98.7 9.2E-08 2E-12 73.8 9.0 110 60-183 15-151 (176)
266 COG3842 PotA ABC-type spermidi 98.7 2.3E-08 4.9E-13 84.5 5.8 31 60-90 25-55 (352)
267 cd03246 ABCC_Protease_Secretio 98.7 2.5E-07 5.4E-12 71.3 11.0 110 60-183 22-158 (173)
268 cd03228 ABCC_MRP_Like The MRP 98.7 1.9E-07 4.1E-12 71.8 10.3 110 60-184 22-158 (171)
269 PF13191 AAA_16: AAA ATPase do 98.7 8.4E-08 1.8E-12 74.3 8.4 59 34-102 2-63 (185)
270 cd03223 ABCD_peroxisomal_ALDP 98.7 1.9E-07 4.2E-12 71.5 10.0 106 60-182 21-149 (166)
271 cd03247 ABCC_cytochrome_bd The 98.7 2.1E-07 4.6E-12 72.0 10.3 110 60-184 22-160 (178)
272 TIGR02237 recomb_radB DNA repa 98.7 1.3E-07 2.7E-12 75.2 8.9 79 61-139 7-111 (209)
273 cd00267 ABC_ATPase ABC (ATP-bi 98.7 3.2E-07 6.9E-12 69.5 10.7 111 60-184 19-143 (157)
274 COG1119 ModF ABC-type molybden 98.7 2E-07 4.3E-12 74.2 9.7 63 116-190 180-242 (257)
275 KOG2170 ATPase of the AAA+ sup 98.7 4.8E-07 1E-11 73.9 11.9 186 34-236 84-321 (344)
276 PF00931 NB-ARC: NB-ARC domain 98.7 5E-07 1.1E-11 75.1 12.4 149 38-220 2-174 (287)
277 COG1117 PstB ABC-type phosphat 98.7 2.3E-07 5E-12 72.3 9.4 50 118-182 160-209 (253)
278 KOG1051 Chaperone HSP104 and r 98.7 1.8E-07 3.9E-12 87.1 10.4 167 31-223 185-370 (898)
279 COG1618 Predicted nucleotide k 98.6 9E-07 1.9E-11 66.0 12.0 26 65-90 4-29 (179)
280 COG1124 DppF ABC-type dipeptid 98.6 1.9E-07 4.2E-12 74.1 9.0 53 117-182 151-203 (252)
281 COG4175 ProV ABC-type proline/ 98.6 1E-07 2.3E-12 78.3 7.6 126 62-203 50-249 (386)
282 PF00493 MCM: MCM2/3/5 family 98.6 1.5E-08 3.2E-13 86.0 2.8 172 33-218 25-223 (331)
283 cd03214 ABC_Iron-Siderophores_ 98.6 3.1E-07 6.7E-12 71.3 9.4 112 60-184 19-161 (180)
284 COG3839 MalK ABC-type sugar tr 98.6 6.2E-08 1.4E-12 81.4 5.8 31 60-90 23-53 (338)
285 cd03230 ABC_DR_subfamily_A Thi 98.6 3.4E-07 7.4E-12 70.5 9.5 110 60-183 20-157 (173)
286 KOG0478 DNA replication licens 98.6 2.4E-07 5.2E-12 82.9 9.2 167 33-214 430-624 (804)
287 COG4619 ABC-type uncharacteriz 98.6 2.6E-07 5.7E-12 69.4 7.9 31 60-90 23-53 (223)
288 COG1127 Ttg2A ABC-type transpo 98.6 1.4E-07 3.1E-12 74.7 6.6 111 60-183 28-208 (263)
289 COG4525 TauB ABC-type taurine 98.6 1.2E-07 2.7E-12 72.9 6.0 31 60-90 25-55 (259)
290 COG1131 CcmA ABC-type multidru 98.6 1.1E-07 2.4E-12 79.3 6.3 51 121-184 150-200 (293)
291 cd01121 Sms Sms (bacterial rad 98.6 8.8E-07 1.9E-11 76.2 11.8 115 62-180 78-209 (372)
292 COG3284 AcoR Transcriptional a 98.6 4.1E-07 8.8E-12 81.0 9.9 157 65-240 335-524 (606)
293 PRK11823 DNA repair protein Ra 98.6 7.6E-07 1.6E-11 78.5 11.6 115 62-180 76-207 (446)
294 cd03283 ABC_MutS-like MutS-lik 98.6 6.8E-07 1.5E-11 70.5 10.0 108 62-183 21-150 (199)
295 COG4555 NatA ABC-type Na+ tran 98.6 4.9E-07 1.1E-11 69.9 8.6 49 122-184 148-196 (245)
296 COG1134 TagH ABC-type polysacc 98.5 7.1E-07 1.5E-11 71.0 9.7 110 60-183 47-209 (249)
297 PRK13539 cytochrome c biogenes 98.5 3.3E-07 7.1E-12 72.7 7.8 49 124-186 144-192 (207)
298 PF03969 AFG1_ATPase: AFG1-lik 98.5 4.8E-07 1E-11 77.4 9.3 103 63-181 59-168 (362)
299 cd03213 ABCG_EPDR ABCG transpo 98.5 1.2E-06 2.7E-11 68.7 10.8 109 60-182 29-172 (194)
300 PRK13538 cytochrome c biogenes 98.5 3.1E-07 6.7E-12 72.7 7.3 49 123-185 145-193 (204)
301 cd01124 KaiC KaiC is a circadi 98.5 1.4E-06 3E-11 67.7 10.7 103 69-182 2-141 (187)
302 cd03229 ABC_Class3 This class 98.5 1.4E-06 3E-11 67.5 10.5 112 60-184 20-164 (178)
303 TIGR01166 cbiO cobalt transpor 98.5 4.3E-07 9.3E-12 71.0 7.8 31 60-90 12-42 (190)
304 TIGR00960 3a0501s02 Type II (G 98.5 3.1E-07 6.7E-12 73.3 7.0 46 124-183 155-200 (216)
305 PRK13406 bchD magnesium chelat 98.5 3.1E-07 6.7E-12 83.2 7.6 146 37-207 8-173 (584)
306 COG4178 ABC-type uncharacteriz 98.5 7.2E-07 1.6E-11 80.0 9.8 108 60-182 413-575 (604)
307 PRK13537 nodulation ABC transp 98.5 4.1E-07 8.8E-12 76.5 7.9 48 122-183 153-200 (306)
308 COG5271 MDN1 AAA ATPase contai 98.5 1.1E-06 2.4E-11 85.5 11.2 138 64-217 886-1048(4600)
309 cd03215 ABC_Carb_Monos_II This 98.5 1.1E-06 2.4E-11 68.3 9.6 110 60-183 20-166 (182)
310 TIGR01188 drrA daunorubicin re 98.5 3.9E-07 8.4E-12 76.6 7.6 46 123-182 140-185 (302)
311 cd03243 ABC_MutS_homologs The 98.5 1.5E-06 3.2E-11 68.7 10.5 106 63-182 26-152 (202)
312 PRK13541 cytochrome c biogenes 98.5 2.3E-06 5E-11 67.2 11.4 31 60-90 20-50 (195)
313 cd03231 ABC_CcmA_heme_exporter 98.5 4.9E-07 1.1E-11 71.4 7.4 50 122-185 140-189 (201)
314 PF00910 RNA_helicase: RNA hel 98.5 3.8E-07 8.3E-12 64.6 6.1 23 69-91 1-23 (107)
315 PF04665 Pox_A32: Poxvirus A32 98.5 3.6E-06 7.9E-11 67.7 12.4 134 64-216 11-170 (241)
316 cd03226 ABC_cobalt_CbiO_domain 98.5 4.9E-07 1.1E-11 71.6 7.3 47 123-183 142-188 (205)
317 PRK09452 potA putrescine/sperm 98.5 3.5E-07 7.7E-12 78.8 7.0 31 60-90 34-64 (375)
318 PRK13543 cytochrome c biogenes 98.5 4.2E-07 9.2E-12 72.5 7.0 31 60-90 31-61 (214)
319 COG1118 CysA ABC-type sulfate/ 98.5 4.6E-07 9.9E-12 74.3 7.1 31 60-90 22-52 (345)
320 cd03292 ABC_FtsE_transporter F 98.5 4.9E-07 1.1E-11 72.0 7.3 31 60-90 21-51 (214)
321 COG4650 RtcR Sigma54-dependent 98.5 5.6E-07 1.2E-11 73.5 7.5 72 61-138 203-295 (531)
322 cd03266 ABC_NatA_sodium_export 98.5 4.7E-07 1E-11 72.3 7.2 46 124-183 153-198 (218)
323 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.5 4.2E-07 9.1E-12 72.6 6.8 48 124-184 157-204 (218)
324 PRK08533 flagellar accessory p 98.5 3E-06 6.4E-11 68.4 11.8 109 62-180 20-162 (230)
325 KOG2543 Origin recognition com 98.5 7.1E-06 1.5E-10 69.2 14.1 160 33-216 7-193 (438)
326 cd03293 ABC_NrtD_SsuB_transpor 98.5 3.6E-07 7.7E-12 73.2 6.3 47 124-183 148-194 (220)
327 cd00983 recA RecA is a bacter 98.5 2E-06 4.4E-11 72.3 11.0 79 62-140 51-148 (325)
328 cd03280 ABC_MutS2 MutS2 homolo 98.5 2.7E-06 5.8E-11 67.1 11.2 106 62-181 23-151 (200)
329 PRK11650 ugpC glycerol-3-phosp 98.5 3.9E-07 8.5E-12 78.1 6.9 31 60-90 24-54 (356)
330 TIGR02012 tigrfam_recA protein 98.5 1.8E-06 4E-11 72.5 10.7 79 62-140 51-148 (321)
331 cd03218 ABC_YhbG The ABC trans 98.5 6.2E-07 1.3E-11 72.3 7.7 46 124-183 150-195 (232)
332 PRK13540 cytochrome c biogenes 98.5 6.3E-07 1.4E-11 70.7 7.5 31 60-90 21-51 (200)
333 cd03301 ABC_MalK_N The N-termi 98.5 4.7E-07 1E-11 72.1 6.8 31 60-90 20-50 (213)
334 PRK13536 nodulation factor exp 98.5 6.5E-07 1.4E-11 76.3 7.9 47 123-183 188-234 (340)
335 COG2274 SunT ABC-type bacterio 98.5 1.1E-06 2.4E-11 81.2 9.9 52 117-183 619-670 (709)
336 TIGR01189 ccmA heme ABC export 98.4 8.6E-07 1.9E-11 69.8 8.0 31 60-90 20-50 (198)
337 cd03259 ABC_Carb_Solutes_like 98.4 5E-07 1.1E-11 71.9 6.8 31 60-90 20-50 (213)
338 cd03269 ABC_putative_ATPase Th 98.4 6.6E-07 1.4E-11 71.1 7.4 31 60-90 20-50 (210)
339 cd03268 ABC_BcrA_bacitracin_re 98.4 5.6E-07 1.2E-11 71.4 6.9 46 124-183 143-188 (208)
340 TIGR03265 PhnT2 putative 2-ami 98.4 4.9E-07 1.1E-11 77.5 6.9 31 60-90 24-54 (353)
341 PRK09361 radB DNA repair and r 98.4 1.1E-06 2.5E-11 70.5 8.7 39 62-100 19-60 (225)
342 cd03262 ABC_HisP_GlnQ_permease 98.4 7.2E-07 1.6E-11 71.0 7.4 31 60-90 20-50 (213)
343 cd03232 ABC_PDR_domain2 The pl 98.4 3.4E-06 7.3E-11 66.1 11.1 108 60-182 27-169 (192)
344 COG4608 AppF ABC-type oligopep 98.4 8.2E-07 1.8E-11 71.9 7.5 110 60-182 33-171 (268)
345 PHA00729 NTP-binding motif con 98.4 7E-07 1.5E-11 71.0 7.0 25 67-91 18-42 (226)
346 cd01129 PulE-GspE PulE/GspE Th 98.4 2.8E-06 6.1E-11 69.9 10.8 94 28-135 56-159 (264)
347 cd03225 ABC_cobalt_CbiO_domain 98.4 8.3E-07 1.8E-11 70.6 7.5 46 124-183 151-196 (211)
348 cd03263 ABC_subfamily_A The AB 98.4 7.7E-07 1.7E-11 71.2 7.4 46 124-184 150-195 (220)
349 cd03265 ABC_DrrA DrrA is the A 98.4 7.8E-07 1.7E-11 71.2 7.4 31 60-90 20-50 (220)
350 TIGR03864 PQQ_ABC_ATP ABC tran 98.4 5.8E-07 1.3E-11 72.7 6.7 49 123-184 148-196 (236)
351 PRK11432 fbpC ferric transport 98.4 5.6E-07 1.2E-11 77.0 6.9 31 60-90 26-56 (351)
352 TIGR02673 FtsE cell division A 98.4 6.9E-07 1.5E-11 71.2 6.9 31 60-90 22-52 (214)
353 PRK06581 DNA polymerase III su 98.4 2.3E-05 5E-10 62.7 15.2 134 66-220 15-165 (263)
354 TIGR02858 spore_III_AA stage I 98.4 8.4E-07 1.8E-11 73.0 7.4 25 67-91 112-136 (270)
355 TIGR02314 ABC_MetN D-methionin 98.4 6.3E-07 1.4E-11 76.4 6.8 48 123-183 156-203 (343)
356 cd03217 ABC_FeS_Assembly ABC-t 98.4 3.6E-06 7.9E-11 66.4 10.7 110 60-183 20-166 (200)
357 cd03264 ABC_drug_resistance_li 98.4 7.2E-07 1.6E-11 70.9 6.7 46 123-183 146-191 (211)
358 PRK10908 cell division protein 98.4 8.5E-07 1.8E-11 71.1 7.1 31 60-90 22-52 (222)
359 COG1122 CbiO ABC-type cobalt t 98.4 1.9E-06 4.1E-11 69.4 9.0 49 123-184 154-202 (235)
360 PRK11607 potG putrescine trans 98.4 7E-07 1.5E-11 77.1 6.9 31 60-90 39-69 (377)
361 TIGR03522 GldA_ABC_ATP gliding 98.4 5.4E-07 1.2E-11 75.6 6.0 45 123-182 149-193 (301)
362 TIGR01288 nodI ATP-binding ABC 98.4 7.2E-07 1.6E-11 75.0 6.8 47 123-183 151-197 (303)
363 TIGR03608 L_ocin_972_ABC putat 98.4 3.4E-06 7.3E-11 66.8 10.2 31 60-90 18-48 (206)
364 PRK11248 tauB taurine transpor 98.4 6.1E-07 1.3E-11 73.5 6.1 31 60-90 21-51 (255)
365 cd03237 ABC_RNaseL_inhibitor_d 98.4 1.5E-06 3.3E-11 70.8 8.3 49 122-183 130-178 (246)
366 PRK11247 ssuB aliphatic sulfon 98.4 9.8E-07 2.1E-11 72.4 7.2 31 60-90 32-62 (257)
367 PRK11000 maltose/maltodextrin 98.4 7.4E-07 1.6E-11 76.8 6.7 31 60-90 23-53 (369)
368 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.4 4.3E-06 9.4E-11 67.1 10.7 31 60-90 42-72 (224)
369 PRK09544 znuC high-affinity zi 98.4 8.5E-07 1.8E-11 72.5 6.6 31 60-90 24-54 (251)
370 TIGR01186 proV glycine betaine 98.4 9.8E-07 2.1E-11 75.7 7.1 31 60-90 13-43 (363)
371 COG3854 SpoIIIAA ncharacterize 98.4 3.9E-06 8.4E-11 66.3 9.7 71 67-137 138-230 (308)
372 TIGR00416 sms DNA repair prote 98.4 6E-06 1.3E-10 73.0 12.2 116 62-181 90-222 (454)
373 PF13207 AAA_17: AAA domain; P 98.4 3.7E-07 8E-12 65.9 3.8 31 69-99 2-32 (121)
374 cd03258 ABC_MetN_methionine_tr 98.4 1.1E-06 2.5E-11 70.8 7.1 31 60-90 25-55 (233)
375 COG4181 Predicted ABC-type tra 98.4 1.4E-06 3E-11 65.8 6.7 53 117-182 156-208 (228)
376 TIGR02211 LolD_lipo_ex lipopro 98.4 1E-06 2.2E-11 70.5 6.6 31 60-90 25-55 (221)
377 cd01131 PilT Pilus retraction 98.4 3.1E-06 6.7E-11 66.7 9.2 67 68-134 3-83 (198)
378 PRK11153 metN DL-methionine tr 98.4 1E-06 2.2E-11 75.3 6.9 48 123-183 156-203 (343)
379 PRK11629 lolD lipoprotein tran 98.4 1E-06 2.2E-11 71.2 6.5 48 124-184 162-209 (233)
380 PRK09536 btuD corrinoid ABC tr 98.4 1.4E-06 3.1E-11 75.7 7.7 49 121-183 153-201 (402)
381 TIGR03740 galliderm_ABC gallid 98.3 5.9E-06 1.3E-10 66.3 10.7 47 123-183 140-186 (223)
382 PRK13648 cbiO cobalt transport 98.3 1.2E-06 2.6E-11 72.4 6.8 31 60-90 29-59 (269)
383 PRK13546 teichoic acids export 98.3 5.1E-06 1.1E-10 68.4 10.5 31 60-90 44-74 (264)
384 PRK13635 cbiO cobalt transport 98.3 1.3E-06 2.8E-11 72.6 6.8 48 124-184 157-204 (279)
385 cd03267 ABC_NatA_like Similar 98.3 5.1E-06 1.1E-10 67.3 10.1 47 124-183 170-216 (236)
386 PRK06067 flagellar accessory p 98.3 9.5E-06 2E-10 65.6 11.7 38 62-99 21-61 (234)
387 cd03224 ABC_TM1139_LivF_branch 98.3 3.3E-06 7.1E-11 67.6 8.9 46 124-183 149-194 (222)
388 cd01394 radB RadB. The archaea 98.3 3.7E-06 8E-11 67.2 9.1 38 62-99 15-55 (218)
389 cd03261 ABC_Org_Solvent_Resist 98.3 1.5E-06 3.3E-11 70.3 6.9 31 60-90 20-50 (235)
390 TIGR01184 ntrCD nitrate transp 98.3 1.6E-06 3.5E-11 69.9 7.1 30 61-90 6-35 (230)
391 smart00534 MUTSac ATPase domai 98.3 1.2E-05 2.7E-10 62.5 11.7 100 69-182 2-123 (185)
392 cd03298 ABC_ThiQ_thiamine_tran 98.3 1.7E-06 3.7E-11 68.8 6.9 31 60-90 18-48 (211)
393 TIGR01277 thiQ thiamine ABC tr 98.3 1.6E-06 3.5E-11 69.1 6.7 31 60-90 18-48 (213)
394 TIGR01618 phage_P_loop phage n 98.3 1.6E-06 3.4E-11 69.1 6.6 23 66-88 12-34 (220)
395 COG3840 ThiQ ABC-type thiamine 98.3 1E-06 2.3E-11 67.1 5.2 31 60-90 19-49 (231)
396 PRK13647 cbiO cobalt transport 98.3 1.9E-06 4.2E-11 71.4 7.3 47 123-183 154-200 (274)
397 PRK13650 cbiO cobalt transport 98.3 1.5E-06 3.3E-11 72.2 6.7 31 60-90 27-57 (279)
398 TIGR03410 urea_trans_UrtE urea 98.3 7E-06 1.5E-10 66.1 10.4 47 124-183 148-194 (230)
399 cd03235 ABC_Metallic_Cations A 98.3 1.7E-06 3.8E-11 68.8 6.8 47 123-183 148-194 (213)
400 PRK10771 thiQ thiamine transpo 98.3 1.4E-06 3E-11 70.4 6.2 31 60-90 19-49 (232)
401 PRK13632 cbiO cobalt transport 98.3 1.4E-06 3.1E-11 72.0 6.4 31 60-90 29-59 (271)
402 PRK11176 lipid transporter ATP 98.3 5.4E-06 1.2E-10 75.9 10.8 31 60-90 363-393 (582)
403 PRK10851 sulfate/thiosulfate t 98.3 1.8E-06 3.8E-11 74.0 7.1 49 122-183 151-199 (353)
404 TIGR03877 thermo_KaiC_1 KaiC d 98.3 1.5E-05 3.2E-10 64.7 12.2 38 61-98 16-56 (237)
405 COG5271 MDN1 AAA ATPase contai 98.3 5.7E-06 1.2E-10 80.8 10.9 139 66-219 1543-1706(4600)
406 cd03233 ABC_PDR_domain1 The pl 98.3 8.1E-06 1.8E-10 64.5 10.4 32 60-91 27-58 (202)
407 PRK13638 cbiO cobalt transport 98.3 2E-06 4.4E-11 71.1 7.2 47 124-184 153-199 (271)
408 TIGR00968 3a0106s01 sulfate AB 98.3 9.7E-07 2.1E-11 71.5 5.2 31 60-90 20-50 (237)
409 cd03281 ABC_MSH5_euk MutS5 hom 98.3 1.6E-05 3.4E-10 63.4 11.9 22 67-88 30-51 (213)
410 cd01123 Rad51_DMC1_radA Rad51_ 98.3 4.8E-06 1E-10 67.3 9.2 118 62-180 15-169 (235)
411 COG1241 MCM2 Predicted ATPase 98.3 8.7E-07 1.9E-11 80.7 5.2 161 33-209 287-476 (682)
412 TIGR02868 CydC thiol reductant 98.3 6.6E-06 1.4E-10 74.4 10.9 31 60-90 355-385 (529)
413 PRK09493 glnQ glutamine ABC tr 98.3 3E-06 6.5E-11 68.7 7.8 31 60-90 21-51 (240)
414 cd03248 ABCC_TAP TAP, the Tran 98.3 5.4E-06 1.2E-10 66.6 9.2 31 60-90 34-64 (226)
415 COG4586 ABC-type uncharacteriz 98.3 6.6E-06 1.4E-10 66.6 9.5 31 60-90 44-74 (325)
416 COG3638 ABC-type phosphate/pho 98.3 4.6E-06 9.9E-11 66.1 8.4 79 123-217 163-245 (258)
417 cd03219 ABC_Mj1267_LivG_branch 98.3 2.1E-06 4.5E-11 69.5 6.7 46 124-183 160-205 (236)
418 PRK13644 cbiO cobalt transport 98.3 1.8E-06 3.9E-11 71.5 6.5 47 124-184 153-199 (274)
419 cd01393 recA_like RecA is a b 98.3 6.4E-06 1.4E-10 66.1 9.5 39 62-100 15-62 (226)
420 PRK11144 modC molybdate transp 98.3 1.9E-06 4.2E-11 73.9 6.8 31 60-90 18-48 (352)
421 cd01128 rho_factor Transcripti 98.3 2.4E-05 5.2E-10 63.7 12.8 116 63-178 13-164 (249)
422 cd03294 ABC_Pro_Gly_Bertaine T 98.3 2.3E-06 5.1E-11 70.6 7.1 31 60-90 44-74 (269)
423 KOG0480 DNA replication licens 98.3 2.1E-06 4.5E-11 76.5 7.0 170 31-216 344-542 (764)
424 COG1135 AbcC ABC-type metal io 98.3 3.5E-06 7.6E-11 69.3 7.9 51 119-182 153-203 (339)
425 PRK10584 putative ABC transpor 98.3 2.2E-06 4.8E-11 69.0 6.7 31 60-90 30-60 (228)
426 TIGR03258 PhnT 2-aminoethylpho 98.3 5.5E-06 1.2E-10 71.2 9.5 31 60-90 25-55 (362)
427 cd03245 ABCC_bacteriocin_expor 98.3 3.6E-06 7.8E-11 67.3 7.9 46 122-182 155-200 (220)
428 PF10443 RNA12: RNA12 protein; 98.3 4.9E-05 1.1E-09 65.6 15.0 153 39-219 3-232 (431)
429 COG1485 Predicted ATPase [Gene 98.3 2E-05 4.2E-10 66.1 12.2 134 30-181 23-171 (367)
430 PF05707 Zot: Zonular occluden 98.3 1.5E-06 3.3E-11 68.1 5.5 122 68-201 2-144 (193)
431 TIGR01420 pilT_fam pilus retra 98.3 7.2E-06 1.6E-10 70.1 10.0 71 64-134 120-204 (343)
432 PRK08118 topology modulation p 98.3 3E-06 6.5E-11 64.9 6.8 34 68-101 3-36 (167)
433 cd03278 ABC_SMC_barmotin Barmo 98.3 1.4E-05 3.1E-10 62.9 10.9 45 124-183 134-178 (197)
434 cd03282 ABC_MSH4_euk MutS4 hom 98.3 1.7E-05 3.6E-10 62.8 11.3 25 64-88 27-51 (204)
435 PRK13652 cbiO cobalt transport 98.3 2.1E-06 4.5E-11 71.2 6.4 31 60-90 24-54 (277)
436 cd03296 ABC_CysA_sulfate_impor 98.3 2.2E-06 4.9E-11 69.5 6.4 31 60-90 22-52 (239)
437 PF07693 KAP_NTPase: KAP famil 98.3 6.9E-05 1.5E-09 63.4 15.7 80 124-219 171-266 (325)
438 cd03251 ABCC_MsbA MsbA is an e 98.3 7.8E-06 1.7E-10 66.0 9.5 48 122-184 153-200 (234)
439 PRK15455 PrkA family serine pr 98.3 1.3E-06 2.8E-11 77.9 5.3 61 30-97 74-135 (644)
440 PF13604 AAA_30: AAA domain; P 98.3 4.8E-06 1.1E-10 65.5 8.0 34 66-99 18-54 (196)
441 cd03252 ABCC_Hemolysin The ABC 98.3 6E-06 1.3E-10 66.8 8.8 49 121-184 152-200 (237)
442 PRK10070 glycine betaine trans 98.2 2.5E-06 5.3E-11 74.2 6.8 31 60-90 48-78 (400)
443 PRK13548 hmuV hemin importer A 98.2 2.3E-06 5.1E-11 70.2 6.4 31 60-90 22-52 (258)
444 PRK05973 replicative DNA helic 98.2 2.4E-05 5.2E-10 63.1 12.0 37 62-98 60-99 (237)
445 PRK11174 cysteine/glutathione 98.2 7.5E-06 1.6E-10 75.0 10.4 31 60-90 370-400 (588)
446 PRK04296 thymidine kinase; Pro 98.2 2.4E-05 5.2E-10 61.2 11.8 31 67-97 3-36 (190)
447 PRK10536 hypothetical protein; 98.2 1.9E-05 4.1E-10 64.1 11.3 46 29-89 52-97 (262)
448 PF03266 NTPase_1: NTPase; In 98.2 9.3E-07 2E-11 67.7 3.6 23 68-90 1-23 (168)
449 PRK10247 putative ABC transpor 98.2 1.1E-05 2.4E-10 64.8 10.1 31 60-90 27-57 (225)
450 PRK09354 recA recombinase A; P 98.2 1E-05 2.2E-10 68.7 10.1 78 62-139 56-152 (349)
451 TIGR02315 ABC_phnC phosphonate 98.2 4.9E-06 1.1E-10 67.6 8.1 31 60-90 22-52 (243)
452 cd03250 ABCC_MRP_domain1 Domai 98.2 1E-05 2.2E-10 64.0 9.7 31 60-90 25-55 (204)
453 COG1373 Predicted ATPase (AAA+ 98.2 3E-05 6.4E-10 67.6 13.3 119 68-210 39-161 (398)
454 PRK11831 putative ABC transpor 98.2 3.2E-06 7E-11 69.8 7.0 31 60-90 27-57 (269)
455 PRK11300 livG leucine/isoleuci 98.2 4.1E-06 8.8E-11 68.6 7.5 48 124-184 170-217 (255)
456 PRK11231 fecE iron-dicitrate t 98.2 3.8E-06 8.2E-11 68.8 7.3 47 124-184 155-201 (255)
457 PRK13633 cobalt transporter AT 98.2 2.8E-06 6.1E-11 70.6 6.6 48 124-184 161-208 (280)
458 PRK11614 livF leucine/isoleuci 98.2 6.1E-06 1.3E-10 66.8 8.4 31 60-90 25-55 (237)
459 PRK09376 rho transcription ter 98.2 3E-05 6.5E-10 66.5 12.8 116 63-178 166-317 (416)
460 PF00437 T2SE: Type II/IV secr 98.2 1.9E-06 4E-11 71.2 5.5 101 25-136 97-208 (270)
461 cd03253 ABCC_ATM1_transporter 98.2 7.2E-06 1.6E-10 66.3 8.8 31 60-90 21-51 (236)
462 PRK10575 iron-hydroxamate tran 98.2 2.6E-06 5.7E-11 70.2 6.3 31 60-90 31-61 (265)
463 COG1066 Sms Predicted ATP-depe 98.2 2.1E-05 4.6E-10 67.1 11.7 114 62-179 89-218 (456)
464 TIGR03878 thermo_KaiC_2 KaiC d 98.2 2.1E-05 4.5E-10 64.6 11.5 37 62-98 32-71 (259)
465 cd03295 ABC_OpuCA_Osmoprotecti 98.2 9E-06 1.9E-10 66.1 9.3 31 60-90 21-51 (242)
466 PRK07261 topology modulation p 98.2 3.9E-06 8.5E-11 64.5 6.7 34 68-101 2-35 (171)
467 TIGR02533 type_II_gspE general 98.2 2.3E-05 5E-10 69.9 12.5 94 27-134 217-320 (486)
468 TIGR03771 anch_rpt_ABC anchore 98.2 5.5E-06 1.2E-10 66.5 7.8 47 123-183 129-175 (223)
469 PRK13639 cbiO cobalt transport 98.2 3.1E-06 6.8E-11 70.1 6.5 46 124-183 154-199 (275)
470 TIGR02688 conserved hypothetic 98.2 1.4E-05 3.1E-10 69.0 10.6 103 64-182 207-314 (449)
471 PF06309 Torsin: Torsin; Inte 98.2 1.2E-05 2.6E-10 57.9 8.6 52 33-90 26-77 (127)
472 PRK10895 lipopolysaccharide AB 98.2 1.5E-05 3.2E-10 64.7 10.3 31 60-90 23-53 (241)
473 PRK11308 dppF dipeptide transp 98.2 3.2E-06 7E-11 71.7 6.6 31 60-90 35-65 (327)
474 COG3267 ExeA Type II secretory 98.2 0.00012 2.6E-09 58.8 15.0 144 67-225 52-222 (269)
475 cd03369 ABCC_NFT1 Domain 2 of 98.2 1.7E-05 3.7E-10 62.8 10.3 31 60-90 28-58 (207)
476 cd03300 ABC_PotA_N PotA is an 98.2 4.4E-06 9.6E-11 67.4 7.0 31 60-90 20-50 (232)
477 COG4618 ArpD ABC-type protease 98.2 1.4E-05 3.1E-10 69.8 10.3 31 60-90 356-386 (580)
478 cd03254 ABCC_Glucan_exporter_l 98.2 1.7E-05 3.7E-10 63.8 10.3 31 60-90 23-53 (229)
479 PRK14250 phosphate ABC transpo 98.2 4.4E-06 9.5E-11 67.9 6.9 31 60-90 23-53 (241)
480 cd03244 ABCC_MRP_domain2 Domai 98.2 1.7E-05 3.6E-10 63.5 10.2 31 60-90 24-54 (221)
481 TIGR03873 F420-0_ABC_ATP propo 98.2 4.4E-06 9.5E-11 68.5 6.9 31 60-90 21-51 (256)
482 PRK13640 cbiO cobalt transport 98.2 1.3E-05 2.7E-10 66.8 9.7 31 60-90 27-57 (282)
483 cd03256 ABC_PhnC_transporter A 98.2 3.9E-06 8.4E-11 68.1 6.5 31 60-90 21-51 (241)
484 PRK11124 artP arginine transpo 98.2 2.1E-05 4.5E-10 63.9 10.8 31 60-90 22-52 (242)
485 PRK11264 putative amino-acid A 98.2 2.2E-05 4.9E-10 64.0 11.0 31 60-90 23-53 (250)
486 TIGR03796 NHPM_micro_ABC1 NHPM 98.2 9.4E-06 2E-10 76.0 9.9 31 60-90 499-529 (710)
487 PRK10790 putative multidrug tr 98.2 1.1E-05 2.4E-10 74.0 10.1 31 60-90 361-391 (592)
488 PRK15056 manganese/iron transp 98.2 5.2E-06 1.1E-10 68.7 7.3 46 124-183 159-204 (272)
489 cd03287 ABC_MSH3_euk MutS3 hom 98.2 2.9E-05 6.2E-10 62.2 11.2 26 63-88 28-53 (222)
490 COG1123 ATPase components of v 98.2 7.6E-06 1.6E-10 72.6 8.6 31 60-90 311-341 (539)
491 cd03234 ABCG_White The White s 98.2 8.7E-06 1.9E-10 65.4 8.4 32 60-91 27-58 (226)
492 PRK13545 tagH teichoic acids e 98.2 5.1E-06 1.1E-10 74.0 7.4 31 60-90 44-74 (549)
493 PRK15112 antimicrobial peptide 98.2 3.9E-06 8.6E-11 69.2 6.4 31 60-90 33-63 (267)
494 cd03227 ABC_Class2 ABC-type Cl 98.2 1.9E-05 4.2E-10 60.1 9.8 26 65-90 20-45 (162)
495 cd03299 ABC_ModC_like Archeal 98.2 5E-06 1.1E-10 67.3 6.9 31 60-90 19-49 (235)
496 PRK13637 cbiO cobalt transport 98.2 4.7E-06 1E-10 69.5 6.9 47 124-183 161-207 (287)
497 PRK10619 histidine/lysine/argi 98.2 2.4E-05 5.2E-10 64.2 10.9 47 124-184 169-215 (257)
498 TIGR03411 urea_trans_UrtD urea 98.2 2E-05 4.3E-10 64.0 10.3 45 124-183 160-204 (242)
499 TIGR03797 NHPM_micro_ABC2 NHPM 98.2 1.2E-05 2.7E-10 74.9 10.3 31 60-90 473-503 (686)
500 PRK15439 autoinducer 2 ABC tra 98.2 4.7E-06 1E-10 75.1 7.1 49 121-183 154-202 (510)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-51 Score=331.53 Aligned_cols=237 Identities=61% Similarity=1.028 Sum_probs=232.0
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
.+..|+.-||.+.||..+.|--.+.|..+|+++.|++++++++++.+..|+++|++|+.+|+.++.++|||||||||||.
T Consensus 121 ~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 121 DSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred CcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
||+++|++.+..|+.+..++++.+|.|+.....+.+|..|+.+.|+||||||+|.+++++.+...+.+.+.|+.|.++++
T Consensus 201 LAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 201 LAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred HHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++++...+++.||++||.++-+||++.+|+||++.|+||.|+.+.|.+||+.|.+.-.+..++|++.|+.+++.++
T Consensus 281 qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~s 357 (406)
T COG1222 281 QLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFS 357 (406)
T ss_pred hccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-41 Score=294.77 Aligned_cols=230 Identities=47% Similarity=0.781 Sum_probs=210.5
Q ss_pred hhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHH
Q 026258 6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85 (241)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~ 85 (241)
+..++.....+.+...+ .+-|+.+|+|+.|++++|++|++.+.+|++.++.|.++|+.++.+||+|||||||||+++++
T Consensus 409 ~~~A~~~i~psa~Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAka 487 (693)
T KOG0730|consen 409 FQEALMGIRPSALREIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKA 487 (693)
T ss_pred HHHHHhcCCchhhhhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHH
Confidence 44455444444444444 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC
Q 026258 86 IASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (241)
Q Consensus 86 la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 165 (241)
+|++.+++|+.+.++++.++|+|+.+..++.+|..+++..|+|||+||+|.+.+.++.+.+ .-..+.+.+++.++++
T Consensus 488 lAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG 564 (693)
T KOG0730|consen 488 LANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDG 564 (693)
T ss_pred HhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999998864443 3345778888999999
Q ss_pred CCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 166 FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 166 ~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
.....++.||++||.|+.+|+++.||+||+..+++|+|+.+.|.+|++.++++.+.+.++|++.|+..|++++.
T Consensus 565 ~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SG 638 (693)
T KOG0730|consen 565 LEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSG 638 (693)
T ss_pred ccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCCh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999998863
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-40 Score=284.57 Aligned_cols=228 Identities=39% Similarity=0.685 Sum_probs=210.2
Q ss_pred hhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 026258 4 LTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (241)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~ 83 (241)
.+|.+||+.-+.+.-.+.+ ..-|.++|+|+.++++++.+|..++.+|+++++.|+++|+..+.++|+|||||||||.|+
T Consensus 484 eDF~~Al~~iQPSakREGF-~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 484 EDFEEALSKIQPSAKREGF-ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred HHHHHHHHhcCcchhcccc-eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHH
Confidence 3677788776665555555 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 84 ~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
+++|++.+..|+.|..+++.++|+|+.+..++.+|..++.+.|+|||+||+|.|...++... .....+.+++++.++
T Consensus 563 KAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtEl 639 (802)
T KOG0733|consen 563 KAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTEL 639 (802)
T ss_pred HHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998886554 444557888889999
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHc--CccCCCCCCHHHHHHHhh
Q 026258 164 DGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA--GIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 164 ~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~--~~~~~~~~~~~~l~~~~~ 235 (241)
++.....+|.||++||.|+-+++++++|+||+..++++.|+.++|.+||+.+.+ +.+++.++|++.|+..++
T Consensus 640 DGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 640 DGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred cccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhccc
Confidence 998888899999999999999999999999999999999999999999999999 788889999999998877
No 4
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-39 Score=251.79 Aligned_cols=228 Identities=50% Similarity=0.896 Sum_probs=218.7
Q ss_pred hhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHH
Q 026258 6 IMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARA 85 (241)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~ 85 (241)
+..-||++.|+..+++...+.|..++.|+.|++-+++++++++..|+...++|+..|+.+++++|+|||||||||.|+++
T Consensus 129 lvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~ka 208 (408)
T KOG0727|consen 129 LVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKA 208 (408)
T ss_pred eeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC
Q 026258 86 IASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (241)
Q Consensus 86 la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 165 (241)
+|+.....|+.+..++++.++.|+.....+.+|..++.+.|+++||||+|.+..++.+.+.+.+.+.|+.+.++++.+++
T Consensus 209 va~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 209 VANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred HhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHH
Q 026258 166 FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233 (241)
Q Consensus 166 ~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 233 (241)
+...-++.||.+||..+.+++++.+|+|+++.|+||.|+..+++-++......-.+..++|++.+..+
T Consensus 289 fdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~r 356 (408)
T KOG0727|consen 289 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVAR 356 (408)
T ss_pred cCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcC
Confidence 98888999999999999999999999999999999999999999999999999888889998876543
No 5
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=248.21 Aligned_cols=234 Identities=53% Similarity=0.924 Sum_probs=221.9
Q ss_pred hhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHH
Q 026258 5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~ 84 (241)
..-.-||-++||.++-|.-.+-|...++-+.|++++++++++.+..|.+.|++|+.+|+..+.+++++||||+|||.|++
T Consensus 120 ~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlar 199 (404)
T KOG0728|consen 120 TLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLAR 199 (404)
T ss_pred HHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHH
Confidence 34567999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 85 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 85 ~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
++|+...+.|+.++.++++.+++|+.....+.+|-.++.+.|++||+||+|.++..+.....+.+.+.|+.+.++++.++
T Consensus 200 aVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 200 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred HHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988888788889999999999999999
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++...+++.+|.+||..+-+++++.+|+|+++.|+||+|+.+.|.+|++.+.+.-.+..++++..++.-.-+++
T Consensus 280 gfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 280 GFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGAS 353 (404)
T ss_pred ccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999998889999999887655543
No 6
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=269.80 Aligned_cols=237 Identities=50% Similarity=0.866 Sum_probs=218.7
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
.+..++.-||...++..+.+...+.|..+|++|+|++++++++.+.+..|+.+++.|.++|+.++.+++|+||||||||+
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~ 194 (398)
T PTZ00454 115 HSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTM 194 (398)
T ss_pred cchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHH
Confidence 35678889999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+++++|++++.+++.+.++.+...+.+.....++.+|..+....|+||+|||+|.++.++.+...+.+...++.+.+++.
T Consensus 195 LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~ 274 (398)
T PTZ00454 195 LAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLN 274 (398)
T ss_pred HHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999887765555566778889999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++.....++.+|++||.++.+++++++++||+..|+++.|+.++|.+||+.+++......+++++.++..++++.
T Consensus 275 ~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 275 QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKIS 351 (398)
T ss_pred HhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCC
Confidence 98887777789999999999999999999999999999999999999999999999988888999999999887664
No 7
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=250.65 Aligned_cols=233 Identities=49% Similarity=0.860 Sum_probs=224.0
Q ss_pred hhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHH
Q 026258 5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~ 84 (241)
=|.+-||.++|+-+-.|--.+.|...++|+.|.++++++|.+++..|...++.|+++|+.++.++|+|||||||||.+++
T Consensus 144 liletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmAR 223 (424)
T KOG0652|consen 144 LILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMAR 223 (424)
T ss_pred eehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHH
Confidence 46788999999999888878899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 85 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 85 ~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
++|.+.+..|.....+.++..++|...+..+..|..++...|.||||||+|.++.++.+.....+.+.|+.+.++++.++
T Consensus 224 AcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 224 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred HHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
++.....+.||++||..+-+++++.+.+|+++.|+||.|+++.|..|++.|.+.-....++.++.|++.++..
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddF 376 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDF 376 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988754
No 8
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=251.72 Aligned_cols=231 Identities=56% Similarity=0.990 Sum_probs=222.8
Q ss_pred hhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 026258 4 LTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (241)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~ 83 (241)
..|.-+||+++||.+.+|.-.+.|..++.|+.|-.++++.+++.+..|+-.|+.|-++|+.++.++|+|||||||||.++
T Consensus 149 yqi~lplppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 149 YQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred eeEeccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 84 ~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
+++|+..+..|+.+-.++++.+++|+.....+++|..++..+.++||+||+|.+++.+.+.+.+.+.+.|+.+.++++.+
T Consensus 229 ravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~ql 308 (435)
T KOG0729|consen 229 RAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQL 308 (435)
T ss_pred HHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHh
Q 026258 164 DGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234 (241)
Q Consensus 164 ~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 234 (241)
+++.+.+++.|+++||.|+.+++++.+|+|+++.++|..|+.+.|.+|++.|.+.-....++-++-|+.+.
T Consensus 309 dgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlc 379 (435)
T KOG0729|consen 309 DGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLC 379 (435)
T ss_pred cCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999998888888888887764
No 9
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-38 Score=251.14 Aligned_cols=236 Identities=79% Similarity=1.213 Sum_probs=227.8
Q ss_pred CchhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHH
Q 026258 1 MTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKT 80 (241)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKT 80 (241)
++++.||.-||++++ .+++|.+.++...+|+.+.|.-.+..++.+.+..++.+|++|.+.|+.++.+++||||||+|||
T Consensus 102 ittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKT 180 (388)
T KOG0651|consen 102 ITTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKT 180 (388)
T ss_pred eeeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchh
Confidence 478999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHH
Q 026258 81 LLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (241)
Q Consensus 81 tl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll 160 (241)
.++++++..++..++.+..+++.+++.|+....++..|..+..+.|++|++||+|..++...+.....+.+.++.+++++
T Consensus 181 lla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLl 260 (388)
T KOG0651|consen 181 LLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELL 260 (388)
T ss_pred HHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 161 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 161 ~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
+++++....++|.+|+|||+++.++++|.+++|+++.+..|.|+...|..|++.+.+.+..+..++.+.+-..++..
T Consensus 261 nqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f 337 (388)
T KOG0651|consen 261 NQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGF 337 (388)
T ss_pred HhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhcc
Confidence 99999888899999999999999999999999999999999999999999999999999999999999888887764
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-37 Score=266.46 Aligned_cols=212 Identities=43% Similarity=0.721 Sum_probs=188.8
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
+....++.+|.++.|+++.+.+|.+.+.. +..|+.|..+|+.+++++||+||||||||+|++++|++++.+|+.+..+.
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApe 258 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPE 258 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchh
Confidence 33445588999999999999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC----CCeEEEEE
Q 026258 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL----GKVKMIMA 177 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~vI~t 177 (241)
+++.+.|+.+..++.+|..++...|+|+||||+|.+.+++...+.... .+.+.+++.-+++.... ..|.||++
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreME---rRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREME---RRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHH---HHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 999999999999999999999999999999999999888755332222 34444555555443333 47999999
Q ss_pred eCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 178 TNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 178 t~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
||.|+.++++|++.+||+++|.+..|++.+|.+||+..+++..+..++++..||++|-++
T Consensus 336 TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 336 TNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGF 395 (802)
T ss_pred CCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999998765
No 11
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.7e-36 Score=261.22 Aligned_cols=236 Identities=57% Similarity=0.973 Sum_probs=216.2
Q ss_pred hhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 026258 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (241)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl 82 (241)
+..++.-+|...++..+.+...+.|..+|++++|++++++++.+++..++.+++.|..+|+.++.+++|+||||||||++
T Consensus 102 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 102 SLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred chhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHH
Confidence 45667788999999888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 83 ~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
++++|++++.+++.+.++.+...+.+.....++.+|..+....|++|||||+|.++..+.......+...++.+..++..
T Consensus 182 Akaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 261 (389)
T PRK03992 182 AKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE 261 (389)
T ss_pred HHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh
Confidence 99999999999999999999988888888999999999999999999999999999877655555567788889999988
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++....+++.||+|||.++.+++++++++||+..+.+++|+.++|.+||+.+++......++++..|+..++++.
T Consensus 262 ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~s 337 (389)
T PRK03992 262 MDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGAS 337 (389)
T ss_pred ccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCC
Confidence 8877666789999999999999999999999999999999999999999999999988888899999999988764
No 12
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=260.52 Aligned_cols=236 Identities=50% Similarity=0.894 Sum_probs=216.7
Q ss_pred hhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 026258 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (241)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl 82 (241)
+..++..+|...||..+.|.-.+.|..+|++|.|++++++++.+++..++.+++.|..+|+.++.+++|+||||||||++
T Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~L 233 (438)
T PTZ00361 154 THSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLL 233 (438)
T ss_pred CCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 45678889999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 83 ~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
++++|++++.+++.+..+.+...+.+.....++.+|..+....|+||+|||+|.++.++....++.+...++.+..++..
T Consensus 234 AraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 234 AKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred HHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999877666666677788888999988
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++.....++.||++||.++.+++++.+++||+..|+|+.|+.++|.+||+.+++......+++++.++..++.+.
T Consensus 314 Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 314 LDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred HhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCC
Confidence 8877666789999999999999999999999999999999999999999999999988888899999988777553
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=258.72 Aligned_cols=208 Identities=42% Similarity=0.696 Sum_probs=192.8
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 105 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~ 105 (241)
..+..|+|+.|.++++++|.+.+. ++++|..|.++|-+-+.++||.||||||||.|+|++|.+.+.+|++...+++...
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 346789999999999999999876 5899999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 106 YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 106 ~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
++|.....++.+|..++.+.|+||||||+|.+++++.... .......+++++.+++++..+.+++||++||.|+.+|
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999998874321 2366788999999999999999999999999999999
Q ss_pred hhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
+++.||+||+..|.+|.||-..|.+||+.|++.+....++|++.|++-+-+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GF 505 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGF 505 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCC
Confidence 9999999999999999999999999999999999999999999998765543
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-36 Score=264.25 Aligned_cols=230 Identities=38% Similarity=0.655 Sum_probs=202.5
Q ss_pred hhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 026258 4 LTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (241)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~ 83 (241)
.+|..+|.+-.....+....++-|+++|+|+.|++++|+.+.+.+..|++.+++|. .|+++..++|||||||||||.+|
T Consensus 644 edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 644 EDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHH
Confidence 35666777767777777888889999999999999999999999999999999994 57788899999999999999999
Q ss_pred HHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 84 RAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 84 ~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
|++|.++...|+.|..+++.+.|+|+.+...+++|..|+..+|+|||+||+|.+..+++.++++. .-.-+.+.+++.++
T Consensus 723 KAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 723 KAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAEL 801 (953)
T ss_pred HHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998886543221 11235666777777
Q ss_pred cCCC--CCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCC-CHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 164 DGFD--QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP-NEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 164 ~~~~--~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p-~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
++.+ ....++||++||+|+-+|+++.+|+||++-+++.++ +.+.+..+++...+.+.++.++|+..|+....
T Consensus 802 Dgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 802 DGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP 876 (953)
T ss_pred hcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC
Confidence 7766 455899999999999999999999999999999766 67888999999999999999999999987654
No 15
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-37 Score=243.28 Aligned_cols=225 Identities=52% Similarity=0.945 Sum_probs=213.6
Q ss_pred hhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHH
Q 026258 8 RALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87 (241)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la 87 (241)
--|--..||..+.|--.+.|..+|.|+.|.+++++++++.+..|+..|+.|+.+|+.++.++++||+||||||.|++++|
T Consensus 161 GvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVA 240 (440)
T KOG0726|consen 161 GVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVA 240 (440)
T ss_pred EEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHh
Confidence 34566789999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC
Q 026258 88 SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (241)
Q Consensus 88 ~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 167 (241)
+.....|+++-.+++..++.|......+++|..+..+.|+|+||||+|.++.++.+..++...+.|+.+.++++.++++.
T Consensus 241 NqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd 320 (440)
T KOG0726|consen 241 NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 320 (440)
T ss_pred cccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHH
Q 026258 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232 (241)
Q Consensus 168 ~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 232 (241)
..+.+.||.+||..+.+++++.+|+|+++.|+|+.|+...++.|+..|...-.+..++.++.+..
T Consensus 321 srgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~ 385 (440)
T KOG0726|consen 321 SRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIM 385 (440)
T ss_pred ccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhh
Confidence 99999999999999999999999999999999999999999999999998888888888776543
No 16
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.6e-34 Score=247.75 Aligned_cols=236 Identities=60% Similarity=0.996 Sum_probs=212.9
Q ss_pred hhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHH
Q 026258 3 TLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLL 82 (241)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl 82 (241)
+..++.-||...+|....+...+.|..+|++++|++++++++.+++..++.+++.|..+|+.++.+++|+||||||||++
T Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 93 TLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLL 172 (364)
T ss_pred cceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHH
Confidence 35566778889998888888788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 83 ARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 83 ~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
++++++.++.+++.+.+..+...+.+.....++.+|..+....|+||+|||+|.++........+.+...+..+..++..
T Consensus 173 akaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ 252 (364)
T TIGR01242 173 AKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE 252 (364)
T ss_pred HHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888999999998899999999999998776655555677788889999988
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++.....+++.+|+|||.++.+++++++++||+..+.++.|+.++|.+|++.+........+++++.++..++++.
T Consensus 253 ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 253 LDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred hhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 8776666789999999999999999999999999999999999999999999998888777889999999998764
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=242.57 Aligned_cols=211 Identities=37% Similarity=0.598 Sum_probs=185.3
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
...|+++|+||.|++++|+-|++++..|+..|++|..+. .+..++|++||||||||.|++++|.+.+..|+.|..+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 456789999999999999999999999999999997655 7889999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC----CCeEEEEEeC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL----GKVKMIMATN 179 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~vI~tt~ 179 (241)
+++.|+.++.++-+|..++...|++|||||||.|+..++.. ..++...+.-.+++..+++.... .-|.|+++||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 99999999999999999999999999999999999887553 22233333344555555543222 1367778899
Q ss_pred CCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 180 ~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
-|+++|+++++ ||...|++|.|+.+.|.++++..++...+...++++.|+..+++++.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySG 418 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSG 418 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCCh
Confidence 99999999999 99999999999999999999999999999999999999999999864
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=235.74 Aligned_cols=217 Identities=37% Similarity=0.664 Sum_probs=189.0
Q ss_pred hhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
.++...-.+.|++.|+|+.|++.+++.|++++..|++.|.+|..-. .+.+++||+||||||||.|++++|.+.+..|+.
T Consensus 118 ~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS 196 (439)
T KOG0739|consen 118 ALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFS 196 (439)
T ss_pred HhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE
Confidence 3444555789999999999999999999999999999999986433 567899999999999999999999999999999
Q ss_pred EechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-CCCCeEEE
Q 026258 97 VVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKMI 175 (241)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~vI 175 (241)
|..+++++++.|+.+...+++|..++.++|+||||||+|.+++.+..+.+....... -+++-.+.+.. .+.++.|+
T Consensus 197 vSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIK---TEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIK---TEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred eehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHH---HHHHHhhhccccCCCceEEE
Confidence 999999999999999999999999999999999999999999988766555544433 44555555543 34589999
Q ss_pred EEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhhccC
Q 026258 176 MATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 176 ~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 239 (241)
++||-|+.++.++++ ||...|++|.|+...|..+++.++...+.. ...|+..|+..|++++.
T Consensus 274 gATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred ecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCc
Confidence 999999999999999 999999999999999999999999886543 56689999999998864
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.7e-35 Score=228.56 Aligned_cols=206 Identities=36% Similarity=0.574 Sum_probs=183.0
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~ 104 (241)
.-+...|+|++|++++++.+.-.+. ++.+|+.|.+|. +.++||+||||||||++++++|++...+++.+....+.+
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 4567899999999999999876654 589999999887 679999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
.++|.....++++|..+....|+|+||||+|.+.=.+..+ +........++.++.+++++..+.+++.|++||+++-+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 9999999999999999999999999999999995333211 11223346778888888888888899999999999999
Q ss_pred ChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++++++ ||...|+|..|+.++|.+|++.+.+..++.-+.+++.++..+.+.+
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCC
Confidence 999999 9999999999999999999999999999988889999999988764
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5e-33 Score=257.30 Aligned_cols=213 Identities=48% Similarity=0.825 Sum_probs=193.8
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
.+.+..+|++++|++++++.|.+.+.+++..++.+.++|+..+.++||+||||||||++++++|++++.+++.+.++.+.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+.+.|+.+..++.+|..++...|+||||||+|.++..+..... .....+.+.+++.++++.....++.||+|||.++.
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDI 602 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhh
Confidence 9999999999999999999999999999999999876643221 22345667778888887766778999999999999
Q ss_pred CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++++++|+||+..++++.|+.++|.+||+.+.++.....+++++.|+..++++.
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999998888999999999988764
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-33 Score=242.01 Aligned_cols=234 Identities=37% Similarity=0.650 Sum_probs=210.9
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
++..|.++|..-....+.-.-..+.....|.++.|+.++++.+.+.+.+|-+.|.+|.+.+++-..++|+|||||||||.
T Consensus 637 tke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~ 716 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTL 716 (952)
T ss_pred hHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHH
Confidence 45566677766666666666656666799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
|+-++|...+..|+.+..+++.++++|..+...+.+|..+..++|+|||+||+|.+.++++....+...+ .+++++.
T Consensus 717 la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDR---VVNQlLT 793 (952)
T KOG0735|consen 717 LASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDR---VVNQLLT 793 (952)
T ss_pred HHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHH---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988776666664 5556666
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++++...-.++.++++|++|+-+|+++.||+|+++.++-+.|++.+|.+|++.+......+.++|++-++..|+++.
T Consensus 794 elDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 794 ELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFT 870 (952)
T ss_pred hhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCc
Confidence 66666666799999999999999999999999999999999999999999999999999999999999999998764
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-33 Score=248.19 Aligned_cols=213 Identities=43% Similarity=0.705 Sum_probs=193.7
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
...+.+.|.|+.|.++++++|.+.+. ++++|+.|.++|...++++||+||||||||.||+++|.+.+.||+.++.++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 34556999999999999999999986 58999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCC-CCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF-SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
....+......+.+|..++.+.|+++++||+|.+++.+. ......+.+....+++++-++++.....++.++++||.++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 999888899999999999999999999999999998884 2344556677789999999999988888899999999999
Q ss_pred CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhhc
Q 026258 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEVS 237 (241)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~~ 237 (241)
-+|+++++|+||+..+.++.|+...|.+|++.|++..... .++++..|+..|.+.
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf 517 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGF 517 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCC
Confidence 9999999999999999999999999999999999998885 566777777766554
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.1e-32 Score=243.13 Aligned_cols=215 Identities=43% Similarity=0.727 Sum_probs=190.7
Q ss_pred ccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhh
Q 026258 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (241)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~ 102 (241)
..+.+..+|++++|++++++++.+.+.. +.++..|.++|...+.++||+||||||||++++++|++++.+++.+++..+
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3457899999999999999999987765 788899999998999999999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+.+.+.....++.+|..++...|+||+|||+|.++..+.......+......+..++.++++....+++.||+|||.++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 88888888888999999999999999999999999877654333444556677888888888777777899999999999
Q ss_pred CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++++++++||+..+.++.|+.++|.+|++.+++......+++++.++..+.++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFS 260 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999887777788889988887654
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-31 Score=238.33 Aligned_cols=215 Identities=46% Similarity=0.778 Sum_probs=193.9
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
......+..+|+++.|+++.++.+++.+..++..++.|.+.++.++.++||+||||||||++++++|.+++.+|+.++.+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
.+.+++.|+.++.++.+|..++...|+|||+||+|.++..+........ .+.+.+++.++++.....++.||++||.
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999999999999999999987754332222 4677777888877777788999999999
Q ss_pred CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccC--CCCCCHHHHHHHhhhcc
Q 026258 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK--HGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~--~~~~~~~~l~~~~~~~~ 238 (241)
++.+++++.+++||+..+++++|+.++|.+|++.+++.... ..++++..++..++++.
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~s 447 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYS 447 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999996543 57889999999887653
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-32 Score=236.81 Aligned_cols=225 Identities=40% Similarity=0.667 Sum_probs=207.5
Q ss_pred CCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 13 EVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
..+..-..++........|.|+.|.+++++++.+.+. ++++|..|..+|..-+.+++++||||||||.|++++|.+.+.
T Consensus 131 ~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 131 SFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred CCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 3445555666666789999999999999999999886 589999999999999999999999999999999999999999
Q ss_pred ceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 93 NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
||+.++.++++..+++......+.+|..++.+.|+|+||||+|.++..+.....+.+.+....+++++.++++...+.++
T Consensus 210 PFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 210 PFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred CceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 99999999999999999999999999999999999999999999998886666666777888999999999999888899
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.++++||.++-+|+++.||+||++.+.++.|+...|++|++.|.+..+++.++++..|++.+.+..
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFS 355 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999887654
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.98 E-value=2.2e-31 Score=233.17 Aligned_cols=200 Identities=42% Similarity=0.771 Sum_probs=171.5
Q ss_pred hhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---
Q 026258 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--- 93 (241)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--- 93 (241)
....+...+.|..+|+++.|++++++++++.+..++..++.|...|+.++.++||+||||||||++++++|++++.+
T Consensus 167 ~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~ 246 (512)
T TIGR03689 167 EVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA 246 (512)
T ss_pred HHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc
Confidence 45566667889999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred -------eEEEechhhcccccchHHHHHHHHHHHHHhC----CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 94 -------FLKVVSSAIIDKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 94 -------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
++.+....+.+.+.++....++.+|..+... .|+||||||+|.++.++....+ +......+.+++..
T Consensus 247 ~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~ 324 (512)
T TIGR03689 247 ETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSE 324 (512)
T ss_pred ccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHH
Confidence 5556667777888888888999999887753 6899999999999977643221 12223456778888
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC
Q 026258 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~ 218 (241)
+++....+++.+|+|||.++.++++++||+||+..|++++|+.++|.+||+.++..
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 87777777899999999999999999999999999999999999999999998865
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=8.3e-31 Score=229.71 Aligned_cols=211 Identities=28% Similarity=0.410 Sum_probs=174.7
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
.+...++..+|++|.|++..|+.+.+....+ .....+.|+..++++||+||||||||++++++|++++.+++.++++
T Consensus 217 ~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~ 293 (489)
T CHL00195 217 ILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG 293 (489)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH
Confidence 3444567889999999999999998765432 2334567889999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
.+.+.+.|+.+..++++|..+....|+||+|||+|.++...... .......+.+..++..+.. ...++.||+|||+
T Consensus 294 ~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~ 369 (489)
T CHL00195 294 KLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANN 369 (489)
T ss_pred HhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCC
Confidence 99999999999999999999999999999999999998653321 1122333445555555542 3357999999999
Q ss_pred CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC--CCCCHHHHHHHhhhcc
Q 026258 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH--GEIDYEAVVKLAEVSR 238 (241)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~--~~~~~~~l~~~~~~~~ 238 (241)
++.+++++.+++||+..++++.|+.++|.+||+.+++..... .+++++.|+..|++++
T Consensus 370 ~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 370 IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999886533 4788999999988775
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=220.45 Aligned_cols=211 Identities=38% Similarity=0.659 Sum_probs=183.7
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhh
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~ 102 (241)
+.-..++|+|+.|++++++.+++.+..|+..|++|..-+ +.+..++|++||||||||.+++++|++.+..|+.+..+.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 455778999999999999999999999999999996444 3578899999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCC--CeEEEEEeCC
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNR 180 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~--~~~vI~tt~~ 180 (241)
.+++.|+.++..+.+|..+..-.|++|+|||+|.+++.+.+.+++........ ++...++...++ .+.|.++||+
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~e---FM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNE---FMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHH---HHHHhccccCCCCceEEEEeCCCC
Confidence 99999999999999999999999999999999999998843333333333333 333444443333 4888899999
Q ss_pred CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
|.++++++.| |+..++.++.|+.++|.+|++..++...+..++|+..++..+++++.
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySG 297 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSG 297 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcH
Confidence 9999999999 99999999999999999999999999999999999999999999863
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=8.6e-31 Score=236.13 Aligned_cols=213 Identities=40% Similarity=0.714 Sum_probs=187.2
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
......+|+|++|++++++++.+.+.. ++++..|..+|...+.++||+||||||||++++++|++++.+++.++++.+.
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 344668999999999999999887754 7888899999999999999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....+.....++.+|..+....|+||+|||+|.++..+.......+......+..++.++++...+.++.+|++||.++.
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 77777777788899999999999999999999998766554444556677888899988887777778999999999999
Q ss_pred CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
+++++++++||+..+.++.|+.++|.+|++.+++......++++..++..+.++
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGF 387 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999987766677888888777653
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.1e-28 Score=228.42 Aligned_cols=210 Identities=45% Similarity=0.796 Sum_probs=183.8
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 105 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~ 105 (241)
.+..+|++++|++++++++.+.+..++..++.+.++|+.++.+++|+||||||||++++++|++++.+++.+++..+.+.
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 106 YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 106 ~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
+.+.....++.+|..+....|++|+|||+|.++.++.......+...+..+..+ ++.....+.+.+|++||.++.++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~---ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTL---MDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHH---hhccccCCCEEEEeecCChhhcC
Confidence 888888999999999999999999999999998776544333334444444444 44444556889999999999999
Q ss_pred hhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++++++||...+.++.|+.++|.+||+.+.+......+++++.++..++++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCC
Confidence 99999999999999999999999999999998888877888888888877653
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-29 Score=211.06 Aligned_cols=223 Identities=34% Similarity=0.585 Sum_probs=188.0
Q ss_pred CChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
..+...+......+++.|+++.|.+.+++.+.+++.+|..+++.|..+. .+..++|+.||||+|||.|++++|.+.+..
T Consensus 135 ~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 135 LIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred hhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcce
Confidence 3344444444566789999999999999999999999999999998776 667899999999999999999999999999
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
|+.+..+.+.++++|+.+..++.+|..++...|+|+||||+|.++.++..+....++.....+.--+.... ....+++.
T Consensus 214 ff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~-s~~~drvl 292 (428)
T KOG0740|consen 214 FFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN-SAPDDRVL 292 (428)
T ss_pred EeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc-CCCCCeEE
Confidence 99999999999999999999999999999999999999999999998866555555544433332222222 13445899
Q ss_pred EEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhhccCC
Q 026258 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 174 vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 240 (241)
+|+|||.|+++|+++++ ||..++++|.|+.+.|..+|..++++.... .+.+.+.|+.+++++..+
T Consensus 293 vigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgs 358 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGS 358 (428)
T ss_pred EEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccc
Confidence 99999999999999999 999999999999999999999999887332 456889999999988653
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=3.4e-28 Score=221.22 Aligned_cols=212 Identities=41% Similarity=0.687 Sum_probs=187.0
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~ 104 (241)
......|+++.|.+..++++.+.+.. +..+..+..++...+.+++|+||||||||+++++++++++.+++.+++..+..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 44567899999999999999998875 56677777788777889999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
.+.+.....++..|..+....|+||||||+|.++..+.....+.+......+..++.+++++..+.++.+|++||.++.+
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 77787788889999999999999999999999987775544444555667888888888887777789999999999999
Q ss_pred ChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
++++.+++||+..+.++.|+.++|.+||+.+++..++..++++..++..+.++
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~ 356 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGF 356 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCC
Confidence 99999999999999999999999999999999999888889999988887654
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.7e-27 Score=197.97 Aligned_cols=202 Identities=20% Similarity=0.318 Sum_probs=147.1
Q ss_pred CCCccccc-cchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc
Q 026258 27 GNVSYSAV-GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 105 (241)
Q Consensus 27 ~~~~~~~l-~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~ 105 (241)
...+|+++ .|.--....+.+.+.. ...+....++++.+.+++|+||||||||.+++++|++++.+++.++.+++.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~h--i~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVH--IAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHH--HHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 44566666 3433333333332221 11122234678999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHh-----CCCeEEEEcCcccccCCCCCCCCCccHHH-HHHHHHHHHHh-----cC----CCCCC
Q 026258 106 YIGESARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSADREI-QRTLMELLNQL-----DG----FDQLG 170 (241)
Q Consensus 106 ~~~~~~~~~~~~f~~~~~-----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~-~~~l~~ll~~~-----~~----~~~~~ 170 (241)
+.|+.++.++.+|..+.. ..|+||||||+|.+++...+.+.....+. ...++.+++.. .+ ....+
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999998875 46999999999999987753222222222 13344443321 11 12355
Q ss_pred CeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 171 KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 171 ~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
++.||+|||+++.|+++++|++||+..+ ..|+.++|.+|++.+++...+ +...+..+++.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l----~~~dv~~Lv~~ 327 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV----SREDVVKLVDT 327 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC----CHHHHHHHHHc
Confidence 8999999999999999999999998864 689999999999999988644 33444444443
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.5e-26 Score=199.85 Aligned_cols=206 Identities=40% Similarity=0.703 Sum_probs=184.6
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccc
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~ 106 (241)
++.. +++.|...+...+.+.+..++..+..+...|+.++.++|++||||+|||.+++++|++.+..++.++++.+...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5556 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhCC-CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 107 IGESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 107 ~~~~~~~~~~~f~~~~~~~-~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
.++.++.+++.|..+.... |++++|||+|.+++++..... ...+....+..+++.+ ...++++|+++||++..++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~---~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGL---KPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhC---cCcCcEEEEEecCCccccC
Confidence 9999999999999999988 999999999999987754333 3444555555555544 4556899999999999999
Q ss_pred hhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++++| +||+..+.+..|+..+|.+|++.+.+......++++..++..+.++.
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYV 386 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchh
Confidence 99999 99999999999999999999999999988877789999998887764
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.2e-26 Score=209.44 Aligned_cols=205 Identities=43% Similarity=0.731 Sum_probs=174.1
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEech
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSS 100 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~~~ 100 (241)
...+.|+++.|++.++.+|++.+..|+..|++|.++++.+++++|++||||||||..++++|..+ ...|+.-+..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 46789999999999999999999999999999999999999999999999999999999999887 4456666677
Q ss_pred hhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
+..++++|+.+..++.+|..++.+.|+|+|+||+|.+...++..+.+.+. .....++..+++....+.++||++||.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~---SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHA---SIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhh---hHHHHHHHhccCCCCCCceEEEcccCC
Confidence 88899999999999999999999999999999999998776443333333 344455666667777889999999999
Q ss_pred CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
++.+++++++|+||+.+++|+.|+.+.|.+|+..+...-. ..+....+..+++
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~--~~i~~~l~~~la~ 468 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE--PPISRELLLWLAE 468 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC--CCCCHHHHHHHHH
Confidence 9999999999999999999999999999999998776654 2344443333333
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=3.8e-25 Score=211.33 Aligned_cols=177 Identities=23% Similarity=0.341 Sum_probs=140.8
Q ss_pred CChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccccc----------c--------------
Q 026258 53 MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYI----------G-------------- 108 (241)
Q Consensus 53 ~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~----------~-------------- 108 (241)
.+...+.++|+.+++++|++||||||||.||+++|.+++.+++.+.++++...+. +
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 3456678999999999999999999999999999999999999999999885430 1
Q ss_pred -----------------h--HHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC---
Q 026258 109 -----------------E--SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--- 166 (241)
Q Consensus 109 -----------------~--~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--- 166 (241)
. ....++.+|..|+..+|+||+|||+|.++... .. ...+..++..+++.
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~--~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SN--YLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cc--eehHHHHHHHhcccccc
Confidence 1 11236788999999999999999999996541 11 11345566666543
Q ss_pred CCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHh--HcCccCCCC-CCHHHHHHHhhhcc
Q 026258 167 DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIH--AAGIAKHGE-IDYEAVVKLAEVSR 238 (241)
Q Consensus 167 ~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~--~~~~~~~~~-~~~~~l~~~~~~~~ 238 (241)
....++.||+|||.|+.+|+++++|+||+..|.++.|+..+|++++..+ .++..+..+ ++++.++..|.++.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfS 1842 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSN 1842 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCC
Confidence 2345899999999999999999999999999999999999999988754 444554433 57899998887764
No 37
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-24 Score=183.09 Aligned_cols=215 Identities=38% Similarity=0.641 Sum_probs=175.2
Q ss_pred hhhccccCCCCCcccc--ccchHHHHHHHH-HHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-c
Q 026258 18 VYNMLHEDPGNVSYSA--VGGLSDQIRELR-ESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-N 93 (241)
Q Consensus 18 ~~~~~~~~~~~~~~~~--l~g~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~-~ 93 (241)
....++++| .|++ +.|++.....+- ++...-+.-|+.-+++|+..-.++|||||||||||.+||.+.+-++. +
T Consensus 208 ~n~ii~Pdf---~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre 284 (744)
T KOG0741|consen 208 SNSIINPDF---NFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE 284 (744)
T ss_pred hccccCCCC---ChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC
Confidence 334444444 6666 578888777664 45555567789999999999999999999999999999999998864 4
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHHHh--------CCCeEEEEcCcccccCCCCCCC--CCccHHHHHHHHHHHHHh
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYARD--------HQPCIIFMDEIDAIGGRRFSEG--TSADREIQRTLMELLNQL 163 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~--------~~~~vl~lDe~d~l~~~~~~~~--~~~~~~~~~~l~~ll~~~ 163 (241)
=-.|+.+++.++|+|+.+..++.+|+.+.. ..--||++||+|.++..+.+.. .+... ..+++++..+
T Consensus 285 PKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD---~VVNQLLsKm 361 (744)
T KOG0741|consen 285 PKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHD---TVVNQLLSKM 361 (744)
T ss_pred CcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccH---HHHHHHHHhc
Confidence 456889999999999999999999988754 2233999999999998887643 23334 4566777777
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC----ccCCCCCCHHHHHHHhhhcc
Q 026258 164 DGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG----IAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 164 ~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~----~~~~~~~~~~~l~~~~~~~~ 238 (241)
++...-+++.||..||+.+-+|++++||+||....++..|+++.|.+|++.|.+. -.+..++|++.|+.+|.-++
T Consensus 362 DGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfS 440 (744)
T KOG0741|consen 362 DGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFS 440 (744)
T ss_pred ccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCc
Confidence 7777778999999999999999999999999889999999999999999977766 34557899999999987543
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=1e-21 Score=144.63 Aligned_cols=130 Identities=45% Similarity=0.740 Sum_probs=106.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCC-CeEEEEcCcccccCCCCCCCCC
Q 026258 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTS 147 (241)
Q Consensus 69 vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~vl~lDe~d~l~~~~~~~~~~ 147 (241)
++|+||||||||++++.+|+.++.+++.+++..+.+.+.+.....+..+|..++... |+||+|||+|.++......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~--- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS--- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc---
Confidence 689999999999999999999999999999999998888899999999999998887 9999999999998776222
Q ss_pred ccHHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCCChhccCCCCcceEEEcCC
Q 026258 148 ADREIQRTLMELLNQLDGFDQL-GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202 (241)
Q Consensus 148 ~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~ 202 (241)
........+..+++.++..... .++.+|++||.++.+++.+.+ +||...++++.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2333344444455554443333 469999999999999999995 69999998863
No 39
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.88 E-value=2.3e-21 Score=151.69 Aligned_cols=182 Identities=27% Similarity=0.344 Sum_probs=119.7
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~ 104 (241)
.-.|.+|++++|+++.+..+.-++..... .-..-.+++||||||+|||||++.+|++++..+...+.+.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 34677999999999999998877754311 1133468999999999999999999999999998877654321
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc-----CCCC--------CCC
Q 026258 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-----GFDQ--------LGK 171 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~~~~--------~~~ 171 (241)
.+... .++... ....||||||+|++ +...+..++..++... +... -++
T Consensus 89 --~~dl~----~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 --AGDLA----AILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --CHHHH----HHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --HHHHH----HHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12222 222222 34579999999999 8888889988887532 1111 136
Q ss_pred eEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 172 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 172 ~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
+.+|++|+....+..++++ ||+....+..++.++...|++........ +++.+....++..+
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRS 211 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCT
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhc
Confidence 8999999999999999999 99999999999999999999977666544 55666555555544
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=2.2e-21 Score=159.33 Aligned_cols=190 Identities=24% Similarity=0.319 Sum_probs=134.8
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCC---CCceEEEEcCCCChHHHHHHHHHHHh-------CCceEEEec
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIK---PPKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVS 99 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~vll~G~~GsGKTtl~~~la~~l-------~~~~~~v~~ 99 (241)
.+++++|++++|+++.+....+... ......|.. ...+++|+|||||||||+++++|+.+ ...++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 4678999999999999998765433 222234443 34579999999999999999999875 346888888
Q ss_pred hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
..+.+.+.++....+...|..+. ++||||||+|.+.... ........+..++..++.. .+++.+|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCC
Confidence 88888888887777777776543 5799999999995311 1111223344455544432 23566776654
Q ss_pred CCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 180 RPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 180 ~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
..+ .+++++++ ||...+.|+.++.+++.+|++.++..... .++.+.+..+.+
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~--~l~~~a~~~l~~ 208 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREY--KLTEEAKWKLRE 208 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCC--ccCHHHHHHHHH
Confidence 322 36788998 99889999999999999999999876433 455555555433
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-21 Score=164.30 Aligned_cols=186 Identities=24% Similarity=0.337 Sum_probs=150.4
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 105 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~ 105 (241)
+.+.+|++++=-.+.+++|.+-+..++++.+.|.+.|..-.++.|||||||||||+++-|+|+.++..++.++.......
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n 274 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD 274 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc
Confidence 34589999999999999999999999999999999998888999999999999999999999999999999988776422
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCC--ccH--HHHHHHHHHHHHhcCCCCCC--CeEEEEEeC
Q 026258 106 YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS--ADR--EIQRTLMELLNQLDGFDQLG--KVKMIMATN 179 (241)
Q Consensus 106 ~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~--~~~--~~~~~l~~ll~~~~~~~~~~--~~~vI~tt~ 179 (241)
.. +++++... ...+||+|+|+|+-+.-....... ... ...-.+.-+|+-+++.+... ..++|+|||
T Consensus 275 -----~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTN 346 (457)
T KOG0743|consen 275 -----SD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTN 346 (457)
T ss_pred -----HH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecC
Confidence 12 55655433 334799999999997543222111 111 12235556777777766655 678999999
Q ss_pred CCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc
Q 026258 180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 180 ~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~ 219 (241)
..+.+||+|.||||++..|++++=+.++-+.+..+++...
T Consensus 347 h~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 347 HKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred ChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999664
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.2e-20 Score=156.27 Aligned_cols=189 Identities=22% Similarity=0.326 Sum_probs=138.2
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCC---CceEEEEcCCCChHHHHHHHHHHHh-------CCceEEEechhh
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKP---PKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVSSAI 102 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~vll~G~~GsGKTtl~~~la~~l-------~~~~~~v~~~~~ 102 (241)
+++|++++|+++.+.... +..+....+.|+.. +.+++|+||||||||++|+++++.+ ..+++.+++..+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 55556666777653 4589999999999999999998876 236889998888
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP- 181 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~- 181 (241)
...+.+.........|..+ .+++|||||++.+..... ......+.+..+..+++. ...++++|++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN-----QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 7777776655566666654 348999999999853221 112234445555555542 23478888887643
Q ss_pred -C---CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 182 -D---VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 182 -~---~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
+ .+++.+.+ ||...+.||+++.+++.+|++.++++... .++.+.+..+.++
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~--~l~~~a~~~L~~~ 226 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQY--RFSAEAEEAFADY 226 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhcc--ccCHHHHHHHHHH
Confidence 2 35789999 99999999999999999999999988543 4555555555443
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=8.1e-21 Score=157.34 Aligned_cols=175 Identities=23% Similarity=0.341 Sum_probs=128.8
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCC---CceEEEEcCCCChHHHHHHHHHHHh-------CCceEEEechhh
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKP---PKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVSSAI 102 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~vll~G~~GsGKTtl~~~la~~l-------~~~~~~v~~~~~ 102 (241)
+++|++++|+++.+.+.. +.-+....+.|+.+ +.+++|+||||||||++|+++|+.+ ..+++.++...+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999998865 33345556666543 4569999999999999999999876 235888888888
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+.+.+........++..+ .++||||||++.+..... ......+.+..+..+++. ..+++++|++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN-----QRDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 7777776655555555543 458999999999864321 112234455555555542 224688888875422
Q ss_pred -----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc
Q 026258 183 -----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA 220 (241)
Q Consensus 183 -----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~ 220 (241)
.+++.+++ ||...+.|++++.+++.+|++.++++..
T Consensus 173 ~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 173 MDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred HHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 35688999 9999999999999999999999998754
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=1.9e-20 Score=168.48 Aligned_cols=183 Identities=17% Similarity=0.278 Sum_probs=135.0
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
|..+..++.+.+|++|+|++++++.|..++.. + ..++.+||+|++|+||||+++.+++.+++.
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~ 70 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS 70 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC
Confidence 56677889999999999999999999998853 1 334567999999999999999999988642
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
+++++.... .....++.+...+. ..+..|++|||+|.| +.
T Consensus 71 ~PCG~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~ 133 (830)
T PRK07003 71 QPCGVCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TN 133 (830)
T ss_pred CCCcccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CH
Confidence 222222110 11122334443332 244679999999999 55
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++- .+++.+|++|++++.+.+.++| || ..+.|..++.++..+.|+..+..... .++.+.+
T Consensus 134 ~A~NALLKtLEEP-----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL 203 (830)
T PRK07003 134 HAFNAMLKTLEEP-----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERI--AFEPQAL 203 (830)
T ss_pred HHHHHHHHHHHhc-----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 5566666666643 2379999999999999999999 99 77999999999999999988876544 5667777
Q ss_pred HHHhhhccCC
Q 026258 231 VKLAEVSRRG 240 (241)
Q Consensus 231 ~~~~~~~~~~ 240 (241)
..+++.+..+
T Consensus 204 ~lIA~~A~Gs 213 (830)
T PRK07003 204 RLLARAAQGS 213 (830)
T ss_pred HHHHHHcCCC
Confidence 7666665443
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=4.5e-20 Score=160.14 Aligned_cols=183 Identities=16% Similarity=0.204 Sum_probs=132.6
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+..++.|.+|++++|++.+++.|..++..- ..++.++|+||+||||||+++.+|+.+++.
T Consensus 5 ~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~ 72 (484)
T PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN 72 (484)
T ss_pred cchhHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc
Confidence 345567789999999999999999999988642 234568999999999999999999998652
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++.... .....++.+...+ ......|++|||+|.+ +.
T Consensus 73 ~pCg~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~ 135 (484)
T PRK14956 73 EPCNECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TD 135 (484)
T ss_pred cccCCCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CH
Confidence 222222110 0112223332222 2345679999999999 55
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++ ..+++.+|++|+.++.+.+.+++ || ..+.|..++.++..+.++..+..... .++.+.+
T Consensus 136 ~A~NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL 205 (484)
T PRK14956 136 QSFNALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGL 205 (484)
T ss_pred HHHHHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 566666555543 33489999999999999999999 99 67899999999888888888776543 5677777
Q ss_pred HHHhhhccCC
Q 026258 231 VKLAEVSRRG 240 (241)
Q Consensus 231 ~~~~~~~~~~ 240 (241)
..+++.+.++
T Consensus 206 ~~Ia~~S~Gd 215 (484)
T PRK14956 206 FWIAKKGDGS 215 (484)
T ss_pred HHHHHHcCCh
Confidence 7777766543
No 46
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.3e-20 Score=165.94 Aligned_cols=180 Identities=17% Similarity=0.290 Sum_probs=128.8
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
|..+..++.+.+|++|+|++.+++.|.+++..- +.++.+||+||+|+||||+++.+++.+++.
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~ 70 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE 70 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc
Confidence 556778899999999999999999999998642 334568999999999999999999998751
Q ss_pred ------------------------eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCC
Q 026258 94 ------------------------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEG 145 (241)
Q Consensus 94 ------------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~ 145 (241)
+++++.... . ....++.+...+ ...+..|++|||+|.|
T Consensus 71 ~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~--~----gVDdIReLie~~~~~P~~gr~KViIIDEah~L-------- 136 (700)
T PRK12323 71 GGITAQPCGQCRACTEIDAGRFVDYIEMDAASN--R----GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------- 136 (700)
T ss_pred ccCCCCCCcccHHHHHHHcCCCCcceEeccccc--C----CHHHHHHHHHHHHhchhcCCceEEEEEChHhc--------
Confidence 222221110 1 112233333332 2344679999999999
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCC
Q 026258 146 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI 225 (241)
Q Consensus 146 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~ 225 (241)
+....+.+...+++ ..+++.+|++|++++.+.+.++| || ..+.|..++.++..+.++..+..... .+
T Consensus 137 ---s~~AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi--~~ 203 (700)
T PRK12323 137 ---TNHAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGI--AH 203 (700)
T ss_pred ---CHHHHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCC--CC
Confidence 55555555555443 33478999999999999999999 98 77899999999999988877765443 34
Q ss_pred CHHHHHHHhhhc
Q 026258 226 DYEAVVKLAEVS 237 (241)
Q Consensus 226 ~~~~l~~~~~~~ 237 (241)
+.+.+..+++.+
T Consensus 204 d~eAL~~IA~~A 215 (700)
T PRK12323 204 EVNALRLLAQAA 215 (700)
T ss_pred CHHHHHHHHHHc
Confidence 555555544443
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.84 E-value=5.9e-20 Score=170.17 Aligned_cols=189 Identities=25% Similarity=0.354 Sum_probs=148.3
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLK 96 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~ 96 (241)
.+-.+++++|+++.++++.+.+.. ...++++|+||||||||++++.+|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 455788999999999999887753 345689999999999999999999987 677889
Q ss_pred Eechhhc--ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 97 VVSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 97 v~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
+++..+. ..+.++.+..++.+|..+....+.||||||+|.+++.+.... .+...++.+...+. ++.+.+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~--~~~~~~~~L~~~l~-------~g~i~~ 314 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG--GSMDASNLLKPALS-------SGKLRC 314 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC--ccHHHHHHHHHHHh-------CCCeEE
Confidence 9988887 467888999999999998877889999999999987653221 12233444444332 257899
Q ss_pred EEEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC--CCCHHHHHHHhhhccCC
Q 026258 175 IMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 175 I~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 240 (241)
|++|+..+ +.++++.+ ||. .+.++.|+.+++.+|++........++ .++.++|..+++++.+.
T Consensus 315 IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ry 384 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARY 384 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcc
Confidence 99998632 57899999 995 799999999999999997776543333 46788888888877654
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.7e-21 Score=154.94 Aligned_cols=186 Identities=25% Similarity=0.395 Sum_probs=142.9
Q ss_pred cccccchHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEEech
Q 026258 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSS 100 (241)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~GsGKTtl~~~la~~l---------~~~~~~v~~~ 100 (241)
|+.++=-.+.|+++..++...+.-.+..-+.. +.-++-+|++||||||||+||+++|+++ ...++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 45666667888899888866543222211111 1234569999999999999999999998 4568899999
Q ss_pred hhcccccchHHHHHHHHHHHHHh---CC--CeEEEEcCcccccCCCCCC-CCCccHHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 101 AIIDKYIGESARLIREMFGYARD---HQ--PCIIFMDEIDAIGGRRFSE-GTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~---~~--~~vl~lDe~d~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
.+.++|.++..+...++|..... .+ -..++|||++.+...+.+. ...+....-+.++.++.+++...+.+++.+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 99999999999888888877643 11 2367899999998776432 334445556677777777777777788888
Q ss_pred EEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC
Q 026258 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 175 I~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~ 218 (241)
++|+|-.+.+|.++.+ |-+.+.++++|+.+.+.+|++.++.+
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 8888888999999998 99889999999999999999987765
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.9e-20 Score=161.15 Aligned_cols=194 Identities=20% Similarity=0.231 Sum_probs=149.3
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEechhhccccc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSAIIDKYI 107 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~~~~~~~~~~ 107 (241)
.+++-....++..-+....| +..+.+++|.||+|||||.|++++++++ ..++..++|+.+.....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45556666666665544433 4567889999999999999999999988 45678899999988878
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCcc---HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 108 GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSAD---REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 108 ~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
....+.+..+|..+.++.|+|++|||+|.+++...++.++.. ......+++++.... ..+..+.+|++.+..+.+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl 554 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTL 554 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhc
Confidence 888999999999999999999999999999984443333322 222333334444332 233457999999999999
Q ss_pred ChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhhcc
Q 026258 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEVSR 238 (241)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~~~ 238 (241)
++.+.++++|+.++.++.|+.++|.+||+..++..... ..-|++.++..|+++.
T Consensus 555 ~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~ 609 (952)
T KOG0735|consen 555 NPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYL 609 (952)
T ss_pred ChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999988876532 2335666888888764
No 50
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.83 E-value=5.3e-20 Score=148.47 Aligned_cols=183 Identities=21% Similarity=0.273 Sum_probs=135.3
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-eEE---
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-FLK--- 96 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-~~~--- 96 (241)
.|..++.|.+|+++.|++.+++.|...+.. ....++|||||||||||+.++++|++++.+ ...
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 355778999999999999999999999863 345689999999999999999999999662 211
Q ss_pred --EechhhcccccchHHHHHHHHHHHHHh---------CC-CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 97 --VVSSAIIDKYIGESARLIREMFGYARD---------HQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 97 --v~~~~~~~~~~~~~~~~~~~~f~~~~~---------~~-~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
.+.+...+.. .....+ +.|+.... ++ +.|++|||+|.+ ....+.++.+.++...
T Consensus 92 l~lnaSderGis--vvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~~s 157 (346)
T KOG0989|consen 92 LELNASDERGIS--VVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMEDFS 157 (346)
T ss_pred hhhccccccccc--chhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhccc
Confidence 1111111111 111111 22333322 22 369999999999 7778888888887532
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
.++++|++||..+.+...+.+ |+ ..+.|+....+.....|+..+..... ++|.+++..+++.+.++
T Consensus 158 -----~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 158 -----RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGD 223 (346)
T ss_pred -----cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCc
Confidence 379999999999999999999 99 45788888888888888887777766 77888888888877654
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.83 E-value=3.4e-19 Score=149.68 Aligned_cols=178 Identities=24% Similarity=0.323 Sum_probs=127.0
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccch
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGE 109 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~ 109 (241)
+|++++|+++.+++|..++.... ..-....+++|+||||||||++++++|++++..+.......... .+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~~ 71 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK--------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PGD 71 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--chh
Confidence 78999999999999999886421 11134567999999999999999999999988776655433211 111
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-------------CCCCCeEEEE
Q 026258 110 SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-------------DQLGKVKMIM 176 (241)
Q Consensus 110 ~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-------------~~~~~~~vI~ 176 (241)
+...+.. ...+.+|+|||++.+ ....+..+..+++..... ...+++.+|+
T Consensus 72 ----l~~~l~~--~~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 72 ----LAAILTN--LEEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred ----HHHHHHh--cccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 1122221 134679999999998 344455555555433210 1123578899
Q ss_pred EeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 177 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 177 tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+|+.+..+++++++ ||...+.+++|+.++..++++........ .++.+.+..+++.+.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~ 192 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSR 192 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhC
Confidence 99999999999999 99888999999999999999988875443 567777777666554
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.83 E-value=3.5e-19 Score=150.94 Aligned_cols=186 Identities=24% Similarity=0.269 Sum_probs=133.6
Q ss_pred ccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhh
Q 026258 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (241)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~ 102 (241)
.....|.+|++++|+++.++.+..++.... ..-.+..+++|+||||||||++++++|++++..+.....+..
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 445567799999999999999998886421 111445689999999999999999999999988776655433
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC-------C------CCC
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-------F------DQL 169 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-------~------~~~ 169 (241)
.. ...+...+.. ...+++|+|||+|.+ ....+..+...++.... . ..-
T Consensus 88 ~~------~~~l~~~l~~--l~~~~vl~IDEi~~l-----------~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 EK------PGDLAAILTN--LEEGDVLFIDEIHRL-----------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred cC------hHHHHHHHHh--cccCCEEEEecHhhc-----------chHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 21 1122233322 234689999999998 33344445555543210 0 011
Q ss_pred CCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 170 ~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
+++++|++|+....+++++++ ||+..+.+++|+.+++.++++........ .++.+.+..+++.+.+
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G 214 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRG 214 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCC
Confidence 357889999998899999998 99889999999999999999988877544 5677777777766543
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=3e-19 Score=156.87 Aligned_cols=180 Identities=21% Similarity=0.307 Sum_probs=129.3
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--------- 92 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--------- 92 (241)
+...+.|.+|++++|++.+++.|...+... ..++.++|+|||||||||+++++|+.++.
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 446788999999999999999998887542 33456999999999999999999998864
Q ss_pred ---------------ceEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHH
Q 026258 93 ---------------NFLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (241)
Q Consensus 93 ---------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~ 153 (241)
.++.++.... .....++.+...+. .....|++|||+|.+ ....+
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~ 134 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAF 134 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHH
Confidence 2334433211 01122333333322 234579999999998 44445
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHH
Q 026258 154 RTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233 (241)
Q Consensus 154 ~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 233 (241)
..+...++. ..+++.+|++|+++..+++++++ |+ ..+.+.+++.++...+++..++.... .++.+++..+
T Consensus 135 ~~LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~I 204 (472)
T PRK14962 135 NALLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFI 204 (472)
T ss_pred HHHHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHH
Confidence 555555543 23478888888888899999999 88 57999999999999999988765543 5677778877
Q ss_pred hhhccCC
Q 026258 234 AEVSRRG 240 (241)
Q Consensus 234 ~~~~~~~ 240 (241)
++.+.++
T Consensus 205 a~~s~Gd 211 (472)
T PRK14962 205 AKRASGG 211 (472)
T ss_pred HHHhCCC
Confidence 7766544
No 54
>PLN03025 replication factor C subunit; Provisional
Probab=99.82 E-value=3.1e-19 Score=150.68 Aligned_cols=182 Identities=18% Similarity=0.183 Sum_probs=132.3
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----ceEE
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLK 96 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~-----~~~~ 96 (241)
|..++.|.+|++++|++++++.|..++.. ....+++|+|||||||||+++++|+++.. .++.
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 45678999999999999999999887753 22347999999999999999999999832 2445
Q ss_pred EechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 97 VVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
++.++..+ .......++. |.... ...+.+++|||+|.+ ....+..+...++... +.+
T Consensus 70 ln~sd~~~--~~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~~-----~~t 130 (319)
T PLN03025 70 LNASDDRG--IDVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIYS-----NTT 130 (319)
T ss_pred eccccccc--HHHHHHHHHH-HHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhccc-----CCc
Confidence 54443211 1111222211 22111 123679999999999 5566777777776432 356
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
++|++||..+.+.+++++ |+ ..+.|++|+.++....++..++.... .++.+.+..+.+.+.++
T Consensus 131 ~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gD 193 (319)
T PLN03025 131 RFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGD 193 (319)
T ss_pred eEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCC
Confidence 789999998889899999 87 67899999999999999988876654 56777888887776654
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=3.4e-19 Score=160.40 Aligned_cols=180 Identities=19% Similarity=0.315 Sum_probs=130.4
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
|..+..++.|.+|++++|++.+++.|...+.. + +-++.+||+||+|+||||+++.+|+.+++.
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA 70 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC
Confidence 55677889999999999999999999988853 1 334558999999999999999999998652
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++.... .....++.+...+ ......|++|||+|.| +.
T Consensus 71 ~pCg~C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~ 133 (647)
T PRK07994 71 TPCGECDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SR 133 (647)
T ss_pred CCCCCCHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CH
Confidence 222222110 0112223333222 2345679999999999 66
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++ ..+++.+|++|++++.+.+.+++ || ..+.|.+++.++....++..+..... .++...+
T Consensus 134 ~a~NALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL 203 (647)
T PRK07994 134 HSFNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQI--PFEPRAL 203 (647)
T ss_pred HHHHHHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 666777777664 33478999999999999999999 87 88999999999999999887765433 3455555
Q ss_pred HHHhhhc
Q 026258 231 VKLAEVS 237 (241)
Q Consensus 231 ~~~~~~~ 237 (241)
..++..+
T Consensus 204 ~~Ia~~s 210 (647)
T PRK07994 204 QLLARAA 210 (647)
T ss_pred HHHHHHc
Confidence 5555444
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=3.1e-19 Score=159.15 Aligned_cols=182 Identities=18% Similarity=0.270 Sum_probs=133.1
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+..++.|.+|++++|++.+++.|..++..- ..++.+||+||+|+||||+++.+|+.+++.
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~ 69 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS 69 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC
Confidence 345667889999999999999999999998631 335678999999999999999999998652
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++.... .....++.+...+ ...+..|++|||+|.+ +.
T Consensus 70 ~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~ 132 (702)
T PRK14960 70 TPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------ST 132 (702)
T ss_pred CCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CH
Confidence 233332211 0112233333332 2245679999999999 55
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
...+.+...+++. .+++.+|++|+++..+...+++ || ..+.|.+++.++....++..+..... .++.+.+
T Consensus 133 ~A~NALLKtLEEP-----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL 202 (702)
T PRK14960 133 HSFNALLKTLEEP-----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQI--AADQDAI 202 (702)
T ss_pred HHHHHHHHHHhcC-----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 5666666666542 2478899999999889889888 88 77999999999999999888876544 5677777
Q ss_pred HHHhhhccC
Q 026258 231 VKLAEVSRR 239 (241)
Q Consensus 231 ~~~~~~~~~ 239 (241)
..+++.+.+
T Consensus 203 ~~IA~~S~G 211 (702)
T PRK14960 203 WQIAESAQG 211 (702)
T ss_pred HHHHHHcCC
Confidence 666666544
No 57
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.6e-19 Score=158.74 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=130.6
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+..++.|.+|++++|++.+++.|..++..- ..++.+||+||+|+||||+++.+|+.+++.
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA 70 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc
Confidence 556778899999999999999999999998631 334568999999999999999999988652
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
+++++.... .....++.+...+. ..+..|++|||+|.+ +.
T Consensus 71 ~pCg~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~ 133 (509)
T PRK14958 71 NPCNDCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SG 133 (509)
T ss_pred ccCCCCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CH
Confidence 333332211 11122333333322 234679999999999 55
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
...+.+...+++. .+++.+|++|++++.+...+++ |+ ..+.|.+++.++....++..++.... .++.+.+
T Consensus 134 ~a~naLLk~LEep-----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al 203 (509)
T PRK14958 134 HSFNALLKTLEEP-----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENV--EFENAAL 203 (509)
T ss_pred HHHHHHHHHHhcc-----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 5556666666542 3478899999999999989999 88 66889999998888888877776544 4566666
Q ss_pred HHHhhhcc
Q 026258 231 VKLAEVSR 238 (241)
Q Consensus 231 ~~~~~~~~ 238 (241)
..+++.+.
T Consensus 204 ~~ia~~s~ 211 (509)
T PRK14958 204 DLLARAAN 211 (509)
T ss_pred HHHHHHcC
Confidence 66655544
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=99.82 E-value=4.4e-19 Score=157.42 Aligned_cols=186 Identities=32% Similarity=0.385 Sum_probs=136.7
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
.|..++.|.++++++|++++++++..++..+.. | .++.+++|+|||||||||+++++|++++..++.++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 444668999999999999999999999975421 1 3367899999999999999999999999999999877
Q ss_pred hhcccccchHHHHHHHHHHHHHh------CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 101 AIIDKYIGESARLIREMFGYARD------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~------~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
...+. ..+......+.. ..+.+|+|||+|.+.+. .+......+..++.. .+..+
T Consensus 74 d~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~~-------~~~~i 133 (482)
T PRK04195 74 DQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIKK-------AKQPI 133 (482)
T ss_pred ccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHHc-------CCCCE
Confidence 64321 122222222211 25679999999998542 123334555555542 24568
Q ss_pred EEEeCCCCCCCh-hccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 175 IMATNRPDVLDP-ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 175 I~tt~~~~~l~~-~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
|+++|++..+.. .+++ ++ ..+.|++|+.++...+++..+..... .++.+.+..+++.+.++
T Consensus 134 Ili~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi--~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 134 ILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGI--ECDDEALKEIAERSGGD 195 (482)
T ss_pred EEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCC
Confidence 889999887776 6766 55 67999999999999999988876554 56778888888776554
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.82 E-value=4.3e-19 Score=148.14 Aligned_cols=172 Identities=31% Similarity=0.431 Sum_probs=126.6
Q ss_pred CCCccccccchHHHH---HHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 27 GNVSYSAVGGLSDQI---RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
.|.++++++|++..+ +-|.+.+.. ..-.+.+|||||||||||+++.+|+..+..|..++....
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~- 84 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS- 84 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-
Confidence 578999999998877 334444431 344689999999999999999999999999999875542
Q ss_pred ccccchHHHHHHHHHHHHHhC----CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe-
Q 026258 104 DKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT- 178 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~----~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt- 178 (241)
..+.++.++..++.. +..|||+||++++ +...|..+.-.++. +.+.+|++|
T Consensus 85 ------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE~-------G~iilIGATT 140 (436)
T COG2256 85 ------GVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVEN-------GTIILIGATT 140 (436)
T ss_pred ------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------ChhhhhhhhhhhcC-------CeEEEEeccC
Confidence 334566677666442 3579999999999 77777787777653 367778665
Q ss_pred CCC-CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC--ccCC---CCCCHHHHHHHhhhccC
Q 026258 179 NRP-DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG--IAKH---GEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 179 ~~~-~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~--~~~~---~~~~~~~l~~~~~~~~~ 239 (241)
.+| -.++++++| |+ .++.+.+.+.++...+++.-+.. ..+. ..++.+.+..++..+..
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 445 489999999 77 67899999999999999872222 2222 23577777777766543
No 60
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.81 E-value=1e-18 Score=147.46 Aligned_cols=188 Identities=20% Similarity=0.273 Sum_probs=132.9
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
.+|..++.|.+|++++|+++.++.+..++.. + ..++.++|+||||+|||++++++++.++.+++.+++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 3455778999999999999999999998852 1 334567779999999999999999999988888887
Q ss_pred hhhcccccchHHHHHHHHHHHHH-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 026258 100 SAIIDKYIGESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 178 (241)
.. . . .......+........ ...+.+|+|||+|.+. ....+..+..+++... +++.+|++|
T Consensus 77 ~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~~-----~~~~~Ilt~ 138 (316)
T PHA02544 77 SD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAYS-----KNCSFIITA 138 (316)
T ss_pred Cc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhcC-----CCceEEEEc
Confidence 76 1 1 2222222222211111 1357899999998872 2334556666666432 367899999
Q ss_pred CCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc---c--CCCCCCHHHHHHHhhhccCC
Q 026258 179 NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI---A--KHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 179 ~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~---~--~~~~~~~~~l~~~~~~~~~~ 240 (241)
|.+..+.+++++ || ..+.++.|+.+++.++++.+.... . ....++.+.+..+++.++++
T Consensus 139 n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d 202 (316)
T PHA02544 139 NNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPD 202 (316)
T ss_pred CChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCC
Confidence 998899999999 88 578999999999988877543332 1 12245666777777766554
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=7.1e-19 Score=161.06 Aligned_cols=188 Identities=20% Similarity=0.247 Sum_probs=130.6
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE-E-
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL-K- 96 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~-~- 96 (241)
+..+..++.|.+|++++|++.+++.|+.++..- +-++.+||+||+||||||+++.+|+.+++.-. .
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~ 70 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA 70 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC
Confidence 445667889999999999999999999888531 23445799999999999999999999865310 0
Q ss_pred ---Eec---hhhccc-------ccc---hHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHH
Q 026258 97 ---VVS---SAIIDK-------YIG---ESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (241)
Q Consensus 97 ---v~~---~~~~~~-------~~~---~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (241)
..| ..+... ... .....++.+...+ ...+..|++|||+|.| ....++.+
T Consensus 71 ~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNAL 139 (944)
T PRK14949 71 TPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNAL 139 (944)
T ss_pred CCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHH
Confidence 000 000000 000 0111223333222 2244679999999999 66677777
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 157 ~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
...+++ ..+++++|++|+++..+.+.+++ || ..+.|++++.++..+.++..+..... .++.+.+..++..
T Consensus 140 LKtLEE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~ 209 (944)
T PRK14949 140 LKTLEE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKA 209 (944)
T ss_pred HHHHhc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Confidence 777764 23478899999999999999999 88 77999999999999998887766432 4565666666555
Q ss_pred ccC
Q 026258 237 SRR 239 (241)
Q Consensus 237 ~~~ 239 (241)
+.+
T Consensus 210 S~G 212 (944)
T PRK14949 210 ANG 212 (944)
T ss_pred cCC
Confidence 433
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=6.7e-19 Score=150.96 Aligned_cols=182 Identities=19% Similarity=0.311 Sum_probs=128.7
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+..++.|.+|++++|++..++.+...+.. + ..++.++|+||+|+||||+++++|+.+.+.
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~ 70 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS 70 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 45567788999999999999999999988853 1 334568999999999999999999988532
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++... ......++.+...+. .....|++|||+|.+ +.
T Consensus 71 ~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~ 133 (363)
T PRK14961 71 NPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SR 133 (363)
T ss_pred CCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CH
Confidence 11121110 011122334443332 133569999999998 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++ ..+++.+|++|++++.+.+.+++ |+ ..+.+++|+.++..++++..++.... .++.+.+
T Consensus 134 ~a~naLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al 203 (363)
T PRK14961 134 HSFNALLKTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESI--DTDEYAL 203 (363)
T ss_pred HHHHHHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 445555555543 23478889888888889999998 88 67899999999999999987766543 4666666
Q ss_pred HHHhhhccC
Q 026258 231 VKLAEVSRR 239 (241)
Q Consensus 231 ~~~~~~~~~ 239 (241)
..+++.+.+
T Consensus 204 ~~ia~~s~G 212 (363)
T PRK14961 204 KLIAYHAHG 212 (363)
T ss_pred HHHHHHcCC
Confidence 666655543
No 63
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=5.8e-19 Score=141.20 Aligned_cols=185 Identities=24% Similarity=0.309 Sum_probs=138.8
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
-...+..|..|++.+|+++++++|.=++... +..-....|+||+||||.|||||+..+|++++..+.....+
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp 86 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP 86 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc
Confidence 3556778999999999999999999888765 22234557999999999999999999999999998777766
Q ss_pred hhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc-----CC--------C
Q 026258 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-----GF--------D 167 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~~--------~ 167 (241)
.+.. .+... .++.. -...+||||||++++ ++.....++-.++... +. -
T Consensus 87 ~leK--~gDla----aiLt~--Le~~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~l 147 (332)
T COG2255 87 ALEK--PGDLA----AILTN--LEEGDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRL 147 (332)
T ss_pred cccC--hhhHH----HHHhc--CCcCCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEec
Confidence 6532 22222 22322 234589999999999 5666667776666532 11 1
Q ss_pred CCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 168 ~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
.-+++.+|++|.....+..++++ ||+....+..++.++..+|+.+..+.... +++.+....++..
T Consensus 148 dLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~r 212 (332)
T COG2255 148 DLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARR 212 (332)
T ss_pred cCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHh
Confidence 11379999999999999999999 99999999999999999999988766554 4555444444433
No 64
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.2e-19 Score=157.22 Aligned_cols=169 Identities=22% Similarity=0.372 Sum_probs=145.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE 144 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~ 144 (241)
....+|++|+||||||++++++|.+++.++++++|..+++...+..+..+..+|..++.++|.||++-++|.+....
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~--- 506 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ--- 506 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC---
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999997432
Q ss_pred CCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCC
Q 026258 145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE 224 (241)
Q Consensus 145 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~ 224 (241)
..+.+...+..+..+++.-......+++.||+++++.+.+++.+++ -|-.++.++.|++++|.+|++.+........+
T Consensus 507 dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~ 584 (953)
T KOG0736|consen 507 DGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQD 584 (953)
T ss_pred CCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchH
Confidence 2356666777777777621222355689999999999999999999 88889999999999999999999999988888
Q ss_pred CCHHHHHHHhhhcc
Q 026258 225 IDYEAVVKLAEVSR 238 (241)
Q Consensus 225 ~~~~~l~~~~~~~~ 238 (241)
+....++..+.+..
T Consensus 585 v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 585 VNLKQLARKTSGFS 598 (953)
T ss_pred HHHHHHHHhcCCCC
Confidence 88888877766543
No 65
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.1e-19 Score=155.80 Aligned_cols=191 Identities=26% Similarity=0.343 Sum_probs=144.9
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-------
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------- 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~------- 104 (241)
.|-.|++++|+++.++++-.. ..+-..+.-++|+||||+|||+|++++|+.++..|+++...+..+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~-------l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQK-------LTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHH-------HhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 357899999999999997421 222244567999999999999999999999999999999876654
Q ss_pred --cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC----------CCCCCe
Q 026258 105 --KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF----------DQLGKV 172 (241)
Q Consensus 105 --~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----------~~~~~~ 172 (241)
.|+|++...+-+....+....| +++|||+|.+... .......++.++++.-... ..-.+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-------~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-------FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-------CCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 4677777777777777777776 8899999999532 2233446677776532111 111389
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC-----ccCC---CCCCHHHHHHHhhhccCC
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-----IAKH---GEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~-----~~~~---~~~~~~~l~~~~~~~~~~ 240 (241)
.+|+|+|+.+.++.+|++ |+ ++|++..++.++..+|-+.|+=- ..+. -.+..++|..+-++|.++
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTRE 540 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTRE 540 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHh
Confidence 999999999999999999 99 88999999999999999977622 2222 245678888888887654
No 66
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.80 E-value=9.1e-19 Score=163.12 Aligned_cols=189 Identities=28% Similarity=0.389 Sum_probs=133.2
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc--------
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-------- 104 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-------- 104 (241)
+++|++++++++.+++..... .+...+.+++|+||||||||++++++|+.++.+++.+++.....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 488999999999998864311 11123457999999999999999999999999999997654321
Q ss_pred -cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc--CC--------CCCCCeE
Q 026258 105 -KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD--GF--------DQLGKVK 173 (241)
Q Consensus 105 -~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~--------~~~~~~~ 173 (241)
.+.+.....+.+.|..+....| |++|||+|.+.... .......+.++++... .+ ...+++.
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 2344444455566666655555 89999999996421 1112345555554310 00 1114788
Q ss_pred EEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHc-----CccC---CCCCCHHHHHHHhhhccC
Q 026258 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA-----GIAK---HGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 174 vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~-----~~~~---~~~~~~~~l~~~~~~~~~ 239 (241)
+|+|||..+.+++++++ || ..+.|+.|+.+++.+|++.++. ...+ .-.++.+++..+.+.+.+
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred EEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence 99999999999999999 99 6789999999999999987762 1111 124677888888876654
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.80 E-value=5.2e-18 Score=144.31 Aligned_cols=186 Identities=19% Similarity=0.293 Sum_probs=131.8
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----Cce
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-----ANF 94 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~-----~~~ 94 (241)
++|..++.|.+|++++|++++++.+.+++.. ....+++|+||||||||++++++++.+. ..+
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 3555677999999999999999999998853 2224799999999999999999999884 346
Q ss_pred EEEechhhcccccc-------------h-------HHHHHHHHHHHHHh-----CCCeEEEEcCcccccCCCCCCCCCcc
Q 026258 95 LKVVSSAIIDKYIG-------------E-------SARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSAD 149 (241)
Q Consensus 95 ~~v~~~~~~~~~~~-------------~-------~~~~~~~~f~~~~~-----~~~~vl~lDe~d~l~~~~~~~~~~~~ 149 (241)
+.+++.++...... . ....++.+...... ..+.+|+|||+|.+ .
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~ 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------R 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------C
Confidence 77777665322100 0 01122222211111 33569999999988 4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHH
Q 026258 150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA 229 (241)
Q Consensus 150 ~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 229 (241)
...+..+..+++... +.+.+|++++.+..+.+.+++ |+ ..+.+.+|+.++..++++..++.... .++.+.
T Consensus 139 ~~~~~~L~~~le~~~-----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~a 208 (337)
T PRK12402 139 EDAQQALRRIMEQYS-----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGV--DYDDDG 208 (337)
T ss_pred HHHHHHHHHHHHhcc-----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 455666666666432 246688888777777788888 76 67899999999999999988876654 467777
Q ss_pred HHHHhhhccC
Q 026258 230 VVKLAEVSRR 239 (241)
Q Consensus 230 l~~~~~~~~~ 239 (241)
+..+++.+..
T Consensus 209 l~~l~~~~~g 218 (337)
T PRK12402 209 LELIAYYAGG 218 (337)
T ss_pred HHHHHHHcCC
Confidence 7777776644
No 68
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.3e-18 Score=156.39 Aligned_cols=183 Identities=17% Similarity=0.266 Sum_probs=130.8
Q ss_pred hhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----
Q 026258 18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---- 93 (241)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---- 93 (241)
.|..+..++.|.+|++++|++.+++.|.+++..- .-++.+||+||+|+||||+++.+|+.+++.
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~ 69 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG 69 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc
Confidence 3566778899999999999999999999998641 334568999999999999999999988642
Q ss_pred -------------------------eEEEechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCC
Q 026258 94 -------------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSE 144 (241)
Q Consensus 94 -------------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~ 144 (241)
++.++.... .....++.+...+.. .+..|++|||+|.+
T Consensus 70 ~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L------- 136 (618)
T PRK14951 70 QGGITATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML------- 136 (618)
T ss_pred ccCCCCCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-------
Confidence 222221110 011223344433322 34579999999999
Q ss_pred CCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCC
Q 026258 145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE 224 (241)
Q Consensus 145 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~ 224 (241)
+....+.+...+++ ..+++.+|++|++++.+...+++ |+ ..+.|..++.++....++..+..... .
T Consensus 137 ----s~~a~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi--~ 202 (618)
T PRK14951 137 ----TNTAFNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENV--P 202 (618)
T ss_pred ----CHHHHHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCC--C
Confidence 55455555555443 33478899999999999989999 88 77999999999999999887766544 4
Q ss_pred CCHHHHHHHhhhccC
Q 026258 225 IDYEAVVKLAEVSRR 239 (241)
Q Consensus 225 ~~~~~l~~~~~~~~~ 239 (241)
++.+.+..+++.+.+
T Consensus 203 ie~~AL~~La~~s~G 217 (618)
T PRK14951 203 AEPQALRLLARAARG 217 (618)
T ss_pred CCHHHHHHHHHHcCC
Confidence 566666666665543
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=1.5e-18 Score=155.98 Aligned_cols=182 Identities=19% Similarity=0.283 Sum_probs=132.4
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+..++.|.+|++++|++.+++.|..++..- +.++.+||+||+|+||||+++.+++.+++.
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~ 70 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG 70 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 556778899999999999999999999998631 345679999999999999999999987543
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++... ......++.++..+ ...+..|++|||+|.+ +.
T Consensus 71 ~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~ 133 (709)
T PRK08691 71 EPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SK 133 (709)
T ss_pred CCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CH
Confidence 11221111 01112344444332 2244679999999988 45
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
...+.+...+++. .+++.+|++|+++..+...+++ || ..+.|+.++.++....++..++.... .++.+.+
T Consensus 134 ~A~NALLKtLEEP-----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL 203 (709)
T PRK08691 134 SAFNAMLKTLEEP-----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPAL 203 (709)
T ss_pred HHHHHHHHHHHhC-----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHH
Confidence 4555566666542 2478899999999999999998 88 66888999999999999988877654 5676666
Q ss_pred HHHhhhccC
Q 026258 231 VKLAEVSRR 239 (241)
Q Consensus 231 ~~~~~~~~~ 239 (241)
..+++.+.+
T Consensus 204 ~~Ia~~A~G 212 (709)
T PRK08691 204 QLLGRAAAG 212 (709)
T ss_pred HHHHHHhCC
Confidence 666666543
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=3e-18 Score=151.23 Aligned_cols=189 Identities=19% Similarity=0.224 Sum_probs=131.5
Q ss_pred hhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE-
Q 026258 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL- 95 (241)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~- 95 (241)
+.+..+..++.|.+|++++|++.+++.|..++.. + ..+++++|+||+||||||+++.+|+.+++...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~ 73 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALI 73 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCcccc
Confidence 3456677889999999999999999999887753 1 34568999999999999999999999865211
Q ss_pred -----------EEechhhccc----------ccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 96 -----------KVVSSAIIDK----------YIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 96 -----------~v~~~~~~~~----------~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
.-.|..+... ........++.++..+. ..+..|++|||+|.+ +.
T Consensus 74 ~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~ 142 (507)
T PRK06645 74 TENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SK 142 (507)
T ss_pred ccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CH
Confidence 0011111100 00011233444444433 234679999999998 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..+..+...+++ ..+++.+|++|+.++.+.+.+++ |+ ..++++.++.++...+++..++.... .++.+.+
T Consensus 143 ~a~naLLk~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL 212 (507)
T PRK06645 143 GAFNALLKTLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENL--KTDIEAL 212 (507)
T ss_pred HHHHHHHHHHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 445555555543 33478889989888889999998 88 67899999999999999988876654 4566666
Q ss_pred HHHhhhcc
Q 026258 231 VKLAEVSR 238 (241)
Q Consensus 231 ~~~~~~~~ 238 (241)
..+++.+.
T Consensus 213 ~~Ia~~s~ 220 (507)
T PRK06645 213 RIIAYKSE 220 (507)
T ss_pred HHHHHHcC
Confidence 66555443
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.80 E-value=1.7e-18 Score=159.26 Aligned_cols=188 Identities=22% Similarity=0.340 Sum_probs=141.3
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEE
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKV 97 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v 97 (241)
.-.++.++|.++.++++.+.+.. ...++++|+||||||||++++.++..+ +..++..
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 34567899999999999988763 345688999999999999999999875 4455566
Q ss_pred echhhc--ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 026258 98 VSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (241)
Q Consensus 98 ~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 175 (241)
+...+. ..+.+..+..++.++..+....+.||||||+|.+++.+... .......+.+..++. .+.+.+|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--~g~~d~~nlLkp~L~-------~g~i~vI 319 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLS-------SGKIRVI 319 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC--CcHHHHHHHHHHHHh-------CCCeEEE
Confidence 555554 34567788888899988887788999999999998765321 112233334444443 3579999
Q ss_pred EEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCC--CHHHHHHHhhhccCC
Q 026258 176 MATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI--DYEAVVKLAEVSRRG 240 (241)
Q Consensus 176 ~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 240 (241)
++|+.++ ..++++.+ || ..+.++.|+.+++.+|++.+......++++ +.+.+....+++.+.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 9998754 57899999 99 579999999999999999888777666655 556777666666554
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2.7e-18 Score=150.50 Aligned_cols=179 Identities=22% Similarity=0.288 Sum_probs=130.5
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--------- 92 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--------- 92 (241)
+..++.|.+|++++|++.+++.|..++.. + ..++++||+||+|+||||+++.+|+.+++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pC 70 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPC 70 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCc
Confidence 45678899999999999999999888753 1 34568999999999999999999987632
Q ss_pred ---------------ceEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHH
Q 026258 93 ---------------NFLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (241)
Q Consensus 93 ---------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~ 153 (241)
.+++++..... ....++.+...+. ..++.|++|||+|.+ +...+
T Consensus 71 g~C~~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~ 133 (491)
T PRK14964 71 GTCHNCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAF 133 (491)
T ss_pred cccHHHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHH
Confidence 23444443211 1122334443332 245679999999998 44445
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHH
Q 026258 154 RTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233 (241)
Q Consensus 154 ~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 233 (241)
+.+...+++ ..+++.+|++|+.++.+.+.+++ |+ ..+.|.+++.++....++..++.... .++.+.+..+
T Consensus 134 NaLLK~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lI 203 (491)
T PRK14964 134 NALLKTLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLI 203 (491)
T ss_pred HHHHHHHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHH
Confidence 555555543 33478899999888889999999 88 66899999999999999988876654 5677777776
Q ss_pred hhhccC
Q 026258 234 AEVSRR 239 (241)
Q Consensus 234 ~~~~~~ 239 (241)
++.+..
T Consensus 204 a~~s~G 209 (491)
T PRK14964 204 AENSSG 209 (491)
T ss_pred HHHcCC
Confidence 666543
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=2.6e-18 Score=159.13 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=130.7
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
++.|..++.+.+|++|+|++.+++.|..++.. + +.++.+||+||+||||||+++.|++.+++.
T Consensus 2 ~~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~ 69 (824)
T PRK07764 2 ALALYRRYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS 69 (824)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC
Confidence 34566889999999999999999999999853 1 334458999999999999999999998642
Q ss_pred ---------------------eEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHH
Q 026258 94 ---------------------FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (241)
Q Consensus 94 ---------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~ 152 (241)
++.++.... ..++.........+......+..|+||||+|.| ....
T Consensus 70 ~pCg~C~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~a 136 (824)
T PRK07764 70 TPCGECDSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQG 136 (824)
T ss_pred CCCcccHHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHHH
Confidence 122221110 011112222222222223355779999999999 6666
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHH
Q 026258 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232 (241)
Q Consensus 153 ~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 232 (241)
++.|+.++++.. .++++|++|+.++.|.+.|++ |+ ..+.|..++.++..++++..++...+ .++.+.+..
T Consensus 137 ~NaLLK~LEEpP-----~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~l 206 (824)
T PRK07764 137 FNALLKIVEEPP-----EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPL 206 (824)
T ss_pred HHHHHHHHhCCC-----CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 777777776532 478899999888889889999 88 77899999999999999888766544 456666555
Q ss_pred Hhhhcc
Q 026258 233 LAEVSR 238 (241)
Q Consensus 233 ~~~~~~ 238 (241)
+++.+.
T Consensus 207 La~~sg 212 (824)
T PRK07764 207 VIRAGG 212 (824)
T ss_pred HHHHcC
Confidence 555443
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.7e-18 Score=152.15 Aligned_cols=183 Identities=16% Similarity=0.232 Sum_probs=128.3
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------- 93 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-------- 93 (241)
+..++.|.+|++++|++.+++.|..++.. + ..++.+||+||+|+||||+++.+|+.+++.
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 70 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPC 70 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcc
Confidence 45778999999999999999999999863 1 333458999999999999999999988642
Q ss_pred ------------------eEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHH
Q 026258 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT 155 (241)
Q Consensus 94 ------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~ 155 (241)
++.++.... ..++........+..........|++|||+|.+ +...++.
T Consensus 71 g~C~~C~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~NA 137 (584)
T PRK14952 71 GVCESCVALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGFNA 137 (584)
T ss_pred cccHHHHHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHHHH
Confidence 222222110 011111121222222222345679999999999 5555666
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 156 LMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 156 l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
+...+++ ..+++++|++|+.++.+.+.+++ |+ ..+.|..++.++..+.++..++.... .++.+.+..+++
T Consensus 138 LLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~ 207 (584)
T PRK14952 138 LLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIR 207 (584)
T ss_pred HHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 6666654 33478999999888999999999 87 77999999999999888888876543 456666666655
Q ss_pred hccC
Q 026258 236 VSRR 239 (241)
Q Consensus 236 ~~~~ 239 (241)
.+.+
T Consensus 208 ~s~G 211 (584)
T PRK14952 208 AGGG 211 (584)
T ss_pred HcCC
Confidence 5443
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.6e-18 Score=150.43 Aligned_cols=186 Identities=19% Similarity=0.275 Sum_probs=129.7
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA------ 92 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~------ 92 (241)
+..+..++.|.+|++++|++.+++.|...+..- ..++.++|+||+|+||||+++.+|+.+++
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTA 70 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 445667789999999999999999999888531 23455899999999999999999998854
Q ss_pred ------------------ceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHH
Q 026258 93 ------------------NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (241)
Q Consensus 93 ------------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (241)
.++.++.... .........+..+-.........|++|||+|.+ +...++
T Consensus 71 ~pCg~C~sC~~i~~~~~~dlieidaas~--~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~n 137 (546)
T PRK14957 71 EPCNKCENCVAINNNSFIDLIEIDAASR--TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFN 137 (546)
T ss_pred CCCcccHHHHHHhcCCCCceEEeecccc--cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHH
Confidence 2222222110 001111122211111122345679999999999 566666
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHh
Q 026258 155 TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234 (241)
Q Consensus 155 ~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 234 (241)
.+...+++. .+.+.+|++|+++..+.+.+++ |+ ..++|.+++.++....++..++.... .++.+.+..++
T Consensus 138 aLLK~LEep-----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia 207 (546)
T PRK14957 138 ALLKTLEEP-----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIA 207 (546)
T ss_pred HHHHHHhcC-----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 676666642 3478889888888888888988 88 78999999999988888887766543 55666666666
Q ss_pred hhccC
Q 026258 235 EVSRR 239 (241)
Q Consensus 235 ~~~~~ 239 (241)
+.+.+
T Consensus 208 ~~s~G 212 (546)
T PRK14957 208 YHAKG 212 (546)
T ss_pred HHcCC
Confidence 65543
No 76
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.79 E-value=4.1e-18 Score=159.30 Aligned_cols=189 Identities=27% Similarity=0.385 Sum_probs=143.6
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLK 96 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~ 96 (241)
.+-.++.++|+++.++++.+.+.. ...++++|+||||||||++++.+|+.+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 466889999999999999887753 445689999999999999999999887 245777
Q ss_pred Eechhhc--ccccchHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 97 VVSSAII--DKYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 97 v~~~~~~--~~~~~~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
++.+.+. ..+.++.+..++.++..+.. ..+.||||||++.+.+.+...... + ..+.+...+ .++.+.
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~-d--~~n~Lkp~l-------~~G~l~ 318 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-D--AANLLKPAL-------ARGELR 318 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc-c--HHHHhhHHh-------hCCCeE
Confidence 7777665 35678888999999998865 357899999999998765332111 1 112232222 235899
Q ss_pred EEEEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCC--CCHHHHHHHhhhccCCC
Q 026258 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE--IDYEAVVKLAEVSRRGL 241 (241)
Q Consensus 174 vI~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 241 (241)
+|++|+..+ ..++++.+ || ..|.++.|+.+++.+|++.+.+.+..++. ++.+++..+++++.+.|
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 999998642 58999999 99 57999999999999999877776554443 57788888888776643
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=2.3e-18 Score=153.57 Aligned_cols=181 Identities=21% Similarity=0.310 Sum_probs=128.6
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
|..+..++.|.+|++++|++.+++.+..++... ..++.+||+||+|+||||+++.+|+.+++.
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTA 70 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 556778899999999999999999999988641 334568999999999999999999998652
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++... ......++.+...+.. .+..|++|||+|.+ +.
T Consensus 71 ~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~ 133 (527)
T PRK14969 71 TPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SK 133 (527)
T ss_pred CCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CH
Confidence 12222110 0112234444443322 34569999999999 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++ ..+++.+|++|++++.+...+++ |+ ..+.|..++.++....+...++.... .++.+.+
T Consensus 134 ~a~naLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al 203 (527)
T PRK14969 134 SAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENI--PFDATAL 203 (527)
T ss_pred HHHHHHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 445555555543 33478899999989888888888 88 77899999999999888877765443 4566666
Q ss_pred HHHhhhcc
Q 026258 231 VKLAEVSR 238 (241)
Q Consensus 231 ~~~~~~~~ 238 (241)
..+++.+.
T Consensus 204 ~~la~~s~ 211 (527)
T PRK14969 204 QLLARAAA 211 (527)
T ss_pred HHHHHHcC
Confidence 66555543
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=8.5e-18 Score=148.82 Aligned_cols=180 Identities=20% Similarity=0.290 Sum_probs=127.2
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------- 93 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-------- 93 (241)
+..++.|.+|++++|++.+++.|..++..- ..++.+||+|||||||||+++++|+.+.+.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg 71 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCG 71 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 346789999999999999999999998641 234557999999999999999999988531
Q ss_pred ---------------eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHH
Q 026258 94 ---------------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (241)
Q Consensus 94 ---------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (241)
++.++.... . ....++.+...+ ....+.+++|||+|.+ ....+.
T Consensus 72 ~C~sc~~i~~~~h~dv~el~~~~~--~----~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~n 134 (504)
T PRK14963 72 ECESCLAVRRGAHPDVLEIDAASN--N----SVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFN 134 (504)
T ss_pred cChhhHHHhcCCCCceEEeccccc--C----CHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHH
Confidence 333332211 1 112222322222 2245679999999887 444444
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHh
Q 026258 155 TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234 (241)
Q Consensus 155 ~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 234 (241)
.+...++. ..+++.+|++++.++.+.+.+.+ |+ ..+.|++|+.++....++..++.... .++.+.+..++
T Consensus 135 aLLk~LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia 204 (504)
T PRK14963 135 ALLKTLEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVA 204 (504)
T ss_pred HHHHHHHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 44444443 22367888889888899999998 88 57899999999999999988876654 45777777777
Q ss_pred hhccCC
Q 026258 235 EVSRRG 240 (241)
Q Consensus 235 ~~~~~~ 240 (241)
+.+..+
T Consensus 205 ~~s~Gd 210 (504)
T PRK14963 205 RLADGA 210 (504)
T ss_pred HHcCCC
Confidence 666543
No 79
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.7e-18 Score=142.68 Aligned_cols=184 Identities=27% Similarity=0.434 Sum_probs=135.5
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~ 104 (241)
..+...|++|+--....+++.+....- .+-.. .-.+-+++++|||||||||.+++.+|...|..+-.+...+. .
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aT-aNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV-A 421 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIAT-ANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV-A 421 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHh-ccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc-c
Confidence 345566888887666666766655321 11111 11233579999999999999999999999999877665554 3
Q ss_pred cccchHHHHHHHHHHHHHhCCCe-EEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 105 KYIGESARLIREMFGYARDHQPC-IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~-vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
......-..++++|+.++....+ +|||||.|.++-++.. ..-++.....++.++-..- .....+.+|++||.|.+
T Consensus 422 PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 422 PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGD 497 (630)
T ss_pred ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccc
Confidence 44445667899999999886655 7899999999876632 2334445566666664432 23347899999999999
Q ss_pred CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc
Q 026258 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA 220 (241)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~ 220 (241)
+|-++-+ |++.+++||.|-.|+|..++..|+....
T Consensus 498 lDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 498 LDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred hhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 9999988 9999999999999999999998886643
No 80
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.78 E-value=2.7e-18 Score=153.47 Aligned_cols=208 Identities=23% Similarity=0.319 Sum_probs=144.5
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
++.+.++.|.+-.+-.++.-+..+..+.+|++++|+++.++.++..+.. ..+.+++|+||||||||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~ 101 (531)
T TIGR02902 35 ESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTA 101 (531)
T ss_pred hhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHH
Confidence 3445555565655656667777788899999999999999999876532 345689999999999999
Q ss_pred HHHHHHHHh----------CCceEEEechhhc--c-----cccchHHHHH---HHH----------HHHHHhCCCeEEEE
Q 026258 82 LARAIASNI----------DANFLKVVSSAII--D-----KYIGESARLI---REM----------FGYARDHQPCIIFM 131 (241)
Q Consensus 82 l~~~la~~l----------~~~~~~v~~~~~~--~-----~~~~~~~~~~---~~~----------f~~~~~~~~~vl~l 131 (241)
+|+++++.. +.+|+.++|.... . ...+.....+ ... .+.......++|||
T Consensus 102 lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~I 181 (531)
T TIGR02902 102 AARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFI 181 (531)
T ss_pred HHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEE
Confidence 999998653 3578999986421 1 0011000000 000 11122345689999
Q ss_pred cCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-----------------------CCCCCeEEEEEe-CCCCCCChh
Q 026258 132 DEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-----------------------DQLGKVKMIMAT-NRPDVLDPA 187 (241)
Q Consensus 132 De~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-----------------------~~~~~~~vI~tt-~~~~~l~~~ 187 (241)
||++.+ +...+..+..+++..... .....+++|++| ++++.++++
T Consensus 182 dEI~~L-----------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~pa 250 (531)
T TIGR02902 182 DEIGEL-----------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPA 250 (531)
T ss_pred echhhC-----------CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChH
Confidence 999999 788888888888753110 001245666655 668999999
Q ss_pred ccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 188 LLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 188 l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++ |+ ..+.+++++.+++.+|++..++.... .++.+.+..+..+++
T Consensus 251 Lrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i--~is~~al~~I~~y~~ 296 (531)
T TIGR02902 251 LRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGI--NLEKHALELIVKYAS 296 (531)
T ss_pred Hhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhhh
Confidence 999 88 67889999999999999998877553 567777777666554
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=7.3e-18 Score=151.32 Aligned_cols=182 Identities=20% Similarity=0.313 Sum_probs=129.2
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA------ 92 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~------ 92 (241)
+..+..++.|.+|++++|++.+++.|..++..- ..++.+||+||+|+|||++++.+|+.+++
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~ 70 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG 70 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 455667899999999999999999999998631 34566899999999999999999998853
Q ss_pred ------------------ceEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 93 ------------------NFLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 93 ------------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
.++.++... +.....++.+...+. ...+.|++|||+|.+ ..
T Consensus 71 ~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~ 133 (559)
T PRK05563 71 EPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------ST 133 (559)
T ss_pred CCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CH
Confidence 233333211 011223344444433 344679999999999 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
...+.+...+ +. ..+++.+|++|+.++.+.+.+++ |+ ..+.|++|+.++....++..++.... .++.+.+
T Consensus 134 ~a~naLLKtL---Ee--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al 203 (559)
T PRK05563 134 GAFNALLKTL---EE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGI--EYEDEAL 203 (559)
T ss_pred HHHHHHHHHh---cC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 4444444444 32 33478888888889999999999 88 56899999999999999988876544 4566666
Q ss_pred HHHhhhccC
Q 026258 231 VKLAEVSRR 239 (241)
Q Consensus 231 ~~~~~~~~~ 239 (241)
..+++.+.+
T Consensus 204 ~~ia~~s~G 212 (559)
T PRK05563 204 RLIARAAEG 212 (559)
T ss_pred HHHHHHcCC
Confidence 665555543
No 82
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.78 E-value=1.1e-17 Score=156.94 Aligned_cols=187 Identities=25% Similarity=0.363 Sum_probs=142.6
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLK 96 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~ 96 (241)
.+-.++.++|+++.++++.+.+.. ...++++|+||||||||++++.+|..+ +..++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 456788999999999999998864 445689999999999999999999988 678888
Q ss_pred Eechhhc--ccccchHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 97 VVSSAII--DKYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 97 v~~~~~~--~~~~~~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
++...+. ..+.+..+..++.+|..+.. ..+.||||||+|.+.+...+.+ ....++.+...+ .++.+.
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---~~d~~~~lkp~l-------~~g~l~ 309 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPAL-------ARGELH 309 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc---chhHHHHhcchh-------hcCCCe
Confidence 8888765 45677888889999987654 4578999999999987653221 222333433332 346899
Q ss_pred EEEEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCC--CCHHHHHHHhhhccC
Q 026258 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE--IDYEAVVKLAEVSRR 239 (241)
Q Consensus 174 vI~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 239 (241)
+|++|+..+ +.++++.+ ||. .|.++.|+.+++..|++.+.+....++. +..+.+...+.++.+
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r 379 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc
Confidence 999998765 58999999 995 5889999999999999988877666654 345666555455443
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=8.7e-18 Score=149.56 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=128.3
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC------
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA------ 92 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~------ 92 (241)
+..|..++.|.+|++++|++.+++.+..++.. + ..++.+||+||+|+||||+|+.+|+.+.+
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~ 70 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG 70 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 45667788999999999999999999998853 1 33467999999999999999999998843
Q ss_pred ------------------ceEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 93 ------------------NFLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 93 ------------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
.++.++.... .....++.+...+ ......|++|||+|.+ ..
T Consensus 71 ~~Cg~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~ 133 (605)
T PRK05896 71 DCCNSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------ST 133 (605)
T ss_pred CCCcccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CH
Confidence 1222221110 0111233333322 2234579999999998 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..+..+...+++. .+++.+|++|+.++.+.+.+++ |+ ..+.|++++.++....++..+..... .++.+.+
T Consensus 134 ~A~NaLLKtLEEP-----p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal 203 (605)
T PRK05896 134 SAWNALLKTLEEP-----PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAI 203 (605)
T ss_pred HHHHHHHHHHHhC-----CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 4556666666542 3478888888888999999999 88 57899999999999988887765543 4566666
Q ss_pred HHHhhhcc
Q 026258 231 VKLAEVSR 238 (241)
Q Consensus 231 ~~~~~~~~ 238 (241)
..+++.+.
T Consensus 204 ~~La~lS~ 211 (605)
T PRK05896 204 DKIADLAD 211 (605)
T ss_pred HHHHHHcC
Confidence 66555554
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=6.2e-18 Score=152.40 Aligned_cols=182 Identities=21% Similarity=0.306 Sum_probs=132.4
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
|..+..++.|.+|++++|++++++.|..++.. + ..++.+||+||+|+||||+++.+++.+++.
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~ 70 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA 70 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC
Confidence 45666789999999999999999999998853 1 345668999999999999999999998542
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
+++++.... .....++.+...+. .....|++|||+|.+ +.
T Consensus 71 ~~c~~c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~ 133 (576)
T PRK14965 71 EPCNVCPPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------ST 133 (576)
T ss_pred CCCCccHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CH
Confidence 222322111 01122334333332 234579999999999 55
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++ ..+++.+|++|+.++.+.+.+++ |+ ..+.|..++.++....++..++.... .++.+.+
T Consensus 134 ~a~naLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al 203 (576)
T PRK14965 134 NAFNALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGI--SISDAAL 203 (576)
T ss_pred HHHHHHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHH
Confidence 556666666664 23478999999999999999999 88 67899999999988888887776544 5666777
Q ss_pred HHHhhhccC
Q 026258 231 VKLAEVSRR 239 (241)
Q Consensus 231 ~~~~~~~~~ 239 (241)
..+++.+..
T Consensus 204 ~~la~~a~G 212 (576)
T PRK14965 204 ALVARKGDG 212 (576)
T ss_pred HHHHHHcCC
Confidence 666665544
No 85
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.77 E-value=1.7e-17 Score=144.72 Aligned_cols=174 Identities=31% Similarity=0.415 Sum_probs=125.0
Q ss_pred cCCCCCccccccchHHHHHH---HHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 24 EDPGNVSYSAVGGLSDQIRE---LRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
....|.+|++++|+++.+.. +.+.+.. ....+++|+|||||||||+++.+++.++..++.+++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 34567899999999999766 7777753 3345899999999999999999999999999988865
Q ss_pred hhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 026258 101 AIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 176 (241)
... ...++.++..+. .....+|+|||+|.+ ....+..+...++. +.+.+|+
T Consensus 71 ~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le~-------~~iilI~ 125 (413)
T PRK13342 71 TSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVED-------GTITLIG 125 (413)
T ss_pred ccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhhc-------CcEEEEE
Confidence 321 122233333332 235689999999998 45556666555542 3566676
Q ss_pred EeC-C-CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC-CCCHHHHHHHhhhcc
Q 026258 177 ATN-R-PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG-EIDYEAVVKLAEVSR 238 (241)
Q Consensus 177 tt~-~-~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~-~~~~~~l~~~~~~~~ 238 (241)
+|+ + ...+++++++ || ..+.+++++.++...+++..+......- .++.+.+..+++.+.
T Consensus 126 att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~ 187 (413)
T PRK13342 126 ATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLAN 187 (413)
T ss_pred eCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCC
Confidence 653 3 3478899999 88 7789999999999999998775532111 566777777776654
No 86
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.77 E-value=1e-17 Score=156.92 Aligned_cols=187 Identities=25% Similarity=0.366 Sum_probs=142.7
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEE
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKV 97 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v 97 (241)
.-.++.++|.++.++++.+.+.. ...++++|+||||||||++++.+|..+ +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899999999999999864 345689999999999999999999887 3678899
Q ss_pred echhhc--ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 026258 98 VSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (241)
Q Consensus 98 ~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 175 (241)
+...+. ..+.++.+..++.++..+....+.||||||+|.+++.+..... ....+.+...+. .+.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~-------rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPALA-------RGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHHh-------CCCcEEE
Confidence 988776 4667888999999999988777899999999999876543221 123334433332 3578999
Q ss_pred EEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC--CCCHHHHHHHhhhccCC
Q 026258 176 MATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 176 ~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 240 (241)
++|+..+ ..++.+.+ || ..+.++.|+.++...|++.....+.... .++.+.+..+.+++.+.
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 9998653 46788988 99 5689999999999999986554432221 26777787777777654
No 87
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.3e-18 Score=149.43 Aligned_cols=189 Identities=26% Similarity=0.415 Sum_probs=141.4
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhc-CCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc------
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------ 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~------ 104 (241)
+|-+|++++|+++.+++.-- ++ |-..+..+.|+||||+|||+++++||+.++..|+++...++.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 45789999999999999642 22 3345667999999999999999999999999999998776643
Q ss_pred ---cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC------C----CCCCC
Q 026258 105 ---KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------F----DQLGK 171 (241)
Q Consensus 105 ---~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------~----~~~~~ 171 (241)
.|+|.+...+-+.+..+..+.| +++|||+|.++... ......++.++++.-.. + -.-.+
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~-------qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH-------QGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC-------CCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 4677778888888888888777 88899999996321 22234566666653211 1 11137
Q ss_pred eEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc-----cCC---CCCCHHHHHHHhhhccC
Q 026258 172 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-----AKH---GEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 172 ~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~ 239 (241)
|.+|+|+|..+.+++++++ |+ +.|+++-+..++..+|-+.|+--. .+. -+++.+++..+-+.|.+
T Consensus 555 VLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr 627 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR 627 (906)
T ss_pred eEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH
Confidence 9999999999999999999 99 889999999999999999776321 111 24555666666555543
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.7e-17 Score=148.38 Aligned_cols=184 Identities=18% Similarity=0.270 Sum_probs=129.4
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------ 93 (241)
..+..++.|.+|++|+|++.+++.|..++.. + .-.+.+||+||+|+|||++++.+|+.+.+.
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~ 71 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE 71 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC
Confidence 3455678999999999999999999998853 1 234679999999999999999999988642
Q ss_pred ------------------eEEEechhhcccccchHHHHHHHHHHH-HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHH
Q 026258 94 ------------------FLKVVSSAIIDKYIGESARLIREMFGY-ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (241)
Q Consensus 94 ------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (241)
++.++.... ..+.... .+...+.. .......|++|||+|.+ ....++
T Consensus 72 pCg~C~sC~~i~~g~hpDv~eId~a~~--~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~n 137 (624)
T PRK14959 72 PCNTCEQCRKVTQGMHVDVVEIDGASN--RGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAFN 137 (624)
T ss_pred CCcccHHHHHHhcCCCCceEEEecccc--cCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHHH
Confidence 333322110 0111111 12222222 22344679999999999 555556
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHh
Q 026258 155 TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234 (241)
Q Consensus 155 ~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 234 (241)
.+...+++- .+++.+|++|+.++.+...+++ |+ ..+.|+.++.++...+++..+..... .++.+.+..++
T Consensus 138 aLLk~LEEP-----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA 207 (624)
T PRK14959 138 ALLKTLEEP-----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIA 207 (624)
T ss_pred HHHHHhhcc-----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 665555542 2478899999988888888988 88 56899999999999999887765543 46777777776
Q ss_pred hhccC
Q 026258 235 EVSRR 239 (241)
Q Consensus 235 ~~~~~ 239 (241)
+.+..
T Consensus 208 ~~s~G 212 (624)
T PRK14959 208 RRAAG 212 (624)
T ss_pred HHcCC
Confidence 66544
No 89
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.76 E-value=2.9e-17 Score=154.36 Aligned_cols=189 Identities=24% Similarity=0.344 Sum_probs=144.2
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLK 96 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~ 96 (241)
.+-.++.++|+++.++++.+.+.. ...++++|+||||+|||++++.++..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 455788999999999999998863 345689999999999999999999886 567888
Q ss_pred Eechhhc--ccccchHHHHHHHHHHHHHhC-CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 97 VVSSAII--DKYIGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 97 v~~~~~~--~~~~~~~~~~~~~~f~~~~~~-~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
++...+. ..+.+..+..++.++..+... .+.||||||+|.+++.+.... .....+.+... ...+.+.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~~~Lk~~-------l~~g~i~ 304 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---AMDAGNMLKPA-------LARGELH 304 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc---hhHHHHHhchh-------hhcCceE
Confidence 8877765 356777888888999887653 588999999999986543221 12222333222 2345799
Q ss_pred EEEEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCC--CHHHHHHHhhhccCCC
Q 026258 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI--DYEAVVKLAEVSRRGL 241 (241)
Q Consensus 174 vI~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 241 (241)
+|++|+..+ ..++++.+ ||. .+.++.|+.+++..|++.+.+.+..++.+ ..+.+...++++.+.|
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 999988763 57999999 995 58899999999999999888887776654 6677777777776543
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.5e-17 Score=149.33 Aligned_cols=188 Identities=19% Similarity=0.281 Sum_probs=128.6
Q ss_pred hhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE-
Q 026258 18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK- 96 (241)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~- 96 (241)
.+..+..++.|.+|++++|++.+++.|..++..- ..++.+||+||+|+|||++++.+|+.+.+.-..
T Consensus 4 ~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~ 71 (725)
T PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD 71 (725)
T ss_pred chhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC
Confidence 3556667889999999999999999999998631 334568999999999999999999988553110
Q ss_pred --Eechhhc---cc------ccc---hHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHH
Q 026258 97 --VVSSAII---DK------YIG---ESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 158 (241)
Q Consensus 97 --v~~~~~~---~~------~~~---~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ 158 (241)
-.|.... +. ..+ .....++.+...+. .....|++|||+|.+ ....+..+..
T Consensus 72 ~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLK 140 (725)
T PRK07133 72 LLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLK 140 (725)
T ss_pred CCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHH
Confidence 0111100 00 000 01222444444333 245679999999998 4445555555
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 159 LLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 159 ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++ +.+.+.+|++|+.++.+.+.+++ || ..+.|.+++.++....++..+..... .++.+++..+++.+.
T Consensus 141 tLEE-----PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~ 210 (725)
T PRK07133 141 TLEE-----PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSS 210 (725)
T ss_pred Hhhc-----CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5553 33478889999889999999999 88 57999999999999888877765543 445555555544443
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.76 E-value=4.2e-17 Score=140.32 Aligned_cols=159 Identities=18% Similarity=0.312 Sum_probs=111.0
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce--------------
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF-------------- 94 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~-------------- 94 (241)
..|++|+|++++++.|.+++...... +...+...++.+||+||+|+|||++++.+|+.+.+.-
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 46899999999999999999753211 1112223467799999999999999999998875431
Q ss_pred ---------EEEechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 95 ---------LKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 95 ---------~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
..+.... .. .....++.++..+.. ....|++|||+|.+ ....++.+...++
T Consensus 79 ~~~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhh
Confidence 1111110 00 112234455554433 34569999999999 5556666666665
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHH
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~ 214 (241)
+ +.+++.+|++|++++.+.+.++| |+ ..+.|++|+.++..+.+..
T Consensus 143 e-----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 143 E-----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred c-----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 3 23467777888889999999999 98 7899999999998877763
No 92
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=6.5e-17 Score=139.21 Aligned_cols=185 Identities=20% Similarity=0.226 Sum_probs=128.1
Q ss_pred hhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE--
Q 026258 18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL-- 95 (241)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~-- 95 (241)
.++.+..++.|.+|++++|++..++.+.+.+.. + ..+++++|+||+|+|||++++++++.+.....
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~ 70 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDD 70 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 356677889999999999999999999999863 1 34568999999999999999999998854211
Q ss_pred --------EEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 96 --------KVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 96 --------~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
.+..... .......++.++..+. ...+.+++|||+|.+ ....+..+...++.
T Consensus 71 ~~~~~~~~~~~l~~~----~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~le~- 134 (367)
T PRK14970 71 PNEDFSFNIFELDAA----SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKTLEE- 134 (367)
T ss_pred CCCCCCcceEEeccc----cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHHHhC-
Confidence 1111110 0011133334444332 234579999999988 33334444444432
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 164 DGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 164 ~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
..+...+|++++....+.+++.+ |+ ..+.+++|+.++...++...++.... .++.+.+..+++.+..
T Consensus 135 ----~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~g 201 (367)
T PRK14970 135 ----PPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADG 201 (367)
T ss_pred ----CCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCC
Confidence 22357788888888888889988 77 56899999999999999887776544 4667777777666544
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.75 E-value=5e-17 Score=139.31 Aligned_cols=180 Identities=21% Similarity=0.334 Sum_probs=126.3
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------- 93 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------- 93 (241)
.+..+..|.+|++++|+++.++.+.+.+.. | ..++.++|+||+|+|||++++.+++.+...
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 70 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP 70 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 345567889999999999999999998853 1 345679999999999999999999887432
Q ss_pred -----------------eEEEechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHH
Q 026258 94 -----------------FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (241)
Q Consensus 94 -----------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~ 152 (241)
++.++... ......++.++..+.. ....|++|||+|.+ ....
T Consensus 71 c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~ 133 (355)
T TIGR02397 71 CNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSA 133 (355)
T ss_pred CCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHH
Confidence 22222211 0111223344443322 33569999999988 3333
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHH
Q 026258 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232 (241)
Q Consensus 153 ~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 232 (241)
...+...+++ ..+++.+|++|++++.+.+.+++ |+ ..+.+++|+.++...+++.+++.... .++.+.+..
T Consensus 134 ~~~Ll~~le~-----~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~ 203 (355)
T TIGR02397 134 FNALLKTLEE-----PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALEL 203 (355)
T ss_pred HHHHHHHHhC-----CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 4444444432 23467888888888888888988 87 67899999999999999988876654 567777776
Q ss_pred HhhhccC
Q 026258 233 LAEVSRR 239 (241)
Q Consensus 233 ~~~~~~~ 239 (241)
+++.+.+
T Consensus 204 l~~~~~g 210 (355)
T TIGR02397 204 IARAADG 210 (355)
T ss_pred HHHHcCC
Confidence 6666544
No 94
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5.4e-17 Score=143.29 Aligned_cols=188 Identities=21% Similarity=0.247 Sum_probs=127.1
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+..++.|.+|++++|++.+++.+...+.. + ..++.++|+||+|+||||+++.+|+.+++.
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~ 70 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEG 70 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCC
Confidence 44566788999999999999999999999853 1 334568899999999999999999988531
Q ss_pred --e-EEEechhhcc-----c--c---cchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHH
Q 026258 94 --F-LKVVSSAIID-----K--Y---IGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (241)
Q Consensus 94 --~-~~v~~~~~~~-----~--~---~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (241)
+ ...+|..+.. . . .......++.+...+. ...+.|++|||+|.+ .....+.+
T Consensus 71 ~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naL 139 (486)
T PRK14953 71 EPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNAL 139 (486)
T ss_pred CCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHH
Confidence 0 0011111100 0 0 0001112233333222 244679999999988 44444555
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 157 ~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
...+++ ..+.+.+|++|+.++.+.+.+.+ |+ ..+.+++++.++....++.+++.... .++.+++..+++.
T Consensus 140 Lk~LEe-----pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~ 209 (486)
T PRK14953 140 LKTLEE-----PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQA 209 (486)
T ss_pred HHHHhc-----CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Confidence 555442 23467888888888888888988 88 57899999999999999988877654 5566666666665
Q ss_pred ccC
Q 026258 237 SRR 239 (241)
Q Consensus 237 ~~~ 239 (241)
+.+
T Consensus 210 s~G 212 (486)
T PRK14953 210 SEG 212 (486)
T ss_pred cCC
Confidence 543
No 95
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=7.9e-17 Score=144.98 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=134.9
Q ss_pred CChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
.....|..+..++.|.+|++++|++.+++.|..++.. + +.++.+||+||+|+||||+++.+|+.+++.
T Consensus 6 ~~~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 6 AAATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCCccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3445578888899999999999999999999998853 1 445679999999999999999999988653
Q ss_pred eEEEe-------------chhhccc-------c---cchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCC
Q 026258 94 FLKVV-------------SSAIIDK-------Y---IGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGT 146 (241)
Q Consensus 94 ~~~v~-------------~~~~~~~-------~---~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~ 146 (241)
....+ |..+... . .......++.+...+. .....|++|||+|.+
T Consensus 74 ~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L--------- 144 (598)
T PRK09111 74 GPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML--------- 144 (598)
T ss_pred CccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC---------
Confidence 21111 1111000 0 0001223444444332 244679999999999
Q ss_pred CccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCC
Q 026258 147 SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID 226 (241)
Q Consensus 147 ~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~ 226 (241)
+....+.+...+++. .+++.+|++|+..+.+.+.+++ |+ ..+.|..++.++....++..++.... .++
T Consensus 145 --s~~a~naLLKtLEeP-----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi--~i~ 212 (598)
T PRK09111 145 --STAAFNALLKTLEEP-----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGV--EVE 212 (598)
T ss_pred --CHHHHHHHHHHHHhC-----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCC--CCC
Confidence 455555666666542 3478899999888888888998 88 67999999999999999988876544 566
Q ss_pred HHHHHHHhhhcc
Q 026258 227 YEAVVKLAEVSR 238 (241)
Q Consensus 227 ~~~l~~~~~~~~ 238 (241)
.+.+..+++.+.
T Consensus 213 ~eAl~lIa~~a~ 224 (598)
T PRK09111 213 DEALALIARAAE 224 (598)
T ss_pred HHHHHHHHHHcC
Confidence 666666555543
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=9.5e-17 Score=140.82 Aligned_cols=182 Identities=21% Similarity=0.328 Sum_probs=126.7
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+...+.|.+|++++|++.+++.+..++.. + ..++.+||+||+|+|||++++.+|+.+...
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~ 71 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTED 71 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccC
Confidence 45666778899999999999999999998853 1 334679999999999999999999988432
Q ss_pred --------------------eEEEechhhcccccchHHHHHHHHHHH----HHhCCCeEEEEcCcccccCCCCCCCCCcc
Q 026258 94 --------------------FLKVVSSAIIDKYIGESARLIREMFGY----ARDHQPCIIFMDEIDAIGGRRFSEGTSAD 149 (241)
Q Consensus 94 --------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~----~~~~~~~vl~lDe~d~l~~~~~~~~~~~~ 149 (241)
++.++.... .+ ...++.+... .....+.|++|||+|.+ .
T Consensus 72 ~~~c~~c~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t 134 (451)
T PRK06305 72 QEPCNQCASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------T 134 (451)
T ss_pred CCCCcccHHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------C
Confidence 222221110 00 1112221111 12245689999999998 4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHH
Q 026258 150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA 229 (241)
Q Consensus 150 ~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 229 (241)
...++.+...+++ ..+++.+|++|+.+..+.+.+++ |+ ..+.++.++.++....++..++.... .++.+.
T Consensus 135 ~~~~n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~a 204 (451)
T PRK06305 135 KEAFNSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGI--ETSREA 204 (451)
T ss_pred HHHHHHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 4445555555553 23478888888888889999999 88 67899999999999888877765433 456666
Q ss_pred HHHHhhhccC
Q 026258 230 VVKLAEVSRR 239 (241)
Q Consensus 230 l~~~~~~~~~ 239 (241)
+..+++.+.+
T Consensus 205 l~~L~~~s~g 214 (451)
T PRK06305 205 LLPIARAAQG 214 (451)
T ss_pred HHHHHHHcCC
Confidence 6666655543
No 97
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1e-16 Score=141.83 Aligned_cols=179 Identities=21% Similarity=0.241 Sum_probs=128.6
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--------- 92 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--------- 92 (241)
+..++.|.+|++++|++.+++.|...+.. + .-++.+||+||+|+|||++++.+++.+..
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 44678899999999999999999998853 1 34456799999999999999999998732
Q ss_pred ---------------ceEEEechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHH
Q 026258 93 ---------------NFLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (241)
Q Consensus 93 ---------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~ 153 (241)
.++.++.... .....++........ ....|++|||+|.+ +...+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~ 134 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAF 134 (535)
T ss_pred cccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 1222221110 011233333332221 33569999999999 66667
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHH
Q 026258 154 RTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKL 233 (241)
Q Consensus 154 ~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 233 (241)
+.+...+++. .+++.+|++|+++..+.+.+++ |+ ..++|.+++.++....++..++.... .++.+.+..+
T Consensus 135 NALLK~LEEp-----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~I 204 (535)
T PRK08451 135 NALLKTLEEP-----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEIL 204 (535)
T ss_pred HHHHHHHhhc-----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHH
Confidence 7777776643 3478899999989999999999 87 67899999999988888887776544 4566666666
Q ss_pred hhhccC
Q 026258 234 AEVSRR 239 (241)
Q Consensus 234 ~~~~~~ 239 (241)
++.+.+
T Consensus 205 a~~s~G 210 (535)
T PRK08451 205 ARSGNG 210 (535)
T ss_pred HHHcCC
Confidence 665543
No 98
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=7.7e-17 Score=144.41 Aligned_cols=182 Identities=19% Similarity=0.237 Sum_probs=128.4
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----- 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----- 93 (241)
+..+..++.|.+|++++|++.+++.|..++..- ..++.+||+||+|+|||++++++|+.+.+.
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~ 70 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP 70 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC
Confidence 455667889999999999999999999998631 334569999999999999999999988542
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHH----HHhCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGY----ARDHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~----~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++... ......++.+... .......|++|||+|.+ +.
T Consensus 71 ~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~ 133 (563)
T PRK06647 71 MPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SN 133 (563)
T ss_pred CCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CH
Confidence 12221110 0011223333322 22345679999999999 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++ ..+.+.+|++|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..++.... .++.+++
T Consensus 134 ~a~naLLK~LEe-----pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl 203 (563)
T PRK06647 134 SAFNALLKTIEE-----PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEAL 203 (563)
T ss_pred HHHHHHHHhhcc-----CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 444555444442 33478888988888889999999 88 56899999999999999887766543 4567777
Q ss_pred HHHhhhccC
Q 026258 231 VKLAEVSRR 239 (241)
Q Consensus 231 ~~~~~~~~~ 239 (241)
..+++.+.+
T Consensus 204 ~lLa~~s~G 212 (563)
T PRK06647 204 KWIAYKSTG 212 (563)
T ss_pred HHHHHHcCC
Confidence 766665543
No 99
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.9e-17 Score=144.94 Aligned_cols=190 Identities=21% Similarity=0.313 Sum_probs=134.9
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-EEE
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF-LKV 97 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~-~~v 97 (241)
+..+..+|.|..|++++|++.+.+.|..++..- +-.+.++|.||.|+||||++|.+|+.+++.- ...
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ 70 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTA 70 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCC
Confidence 556778999999999999999999999999641 4456799999999999999999999986542 111
Q ss_pred e-------chhhccc-ccc---------hHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHH
Q 026258 98 V-------SSAIIDK-YIG---------ESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (241)
Q Consensus 98 ~-------~~~~~~~-~~~---------~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (241)
. |..+... ..+ .....++.+...+ ...++.|++|||+|.| +. ..+
T Consensus 71 ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~---~af 136 (515)
T COG2812 71 EPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SK---QAF 136 (515)
T ss_pred CcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hH---HHH
Confidence 1 1111110 000 0113334444433 3355789999999998 33 455
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCC-CHHHHHHHhh
Q 026258 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI-DYEAVVKLAE 235 (241)
Q Consensus 157 ~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~-~~~~l~~~~~ 235 (241)
+.++..++ .+..+|.+|++|..++.++..++| || ..+.|...+.++....+...+.+.....+. .+..|++.++
T Consensus 137 NALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 137 NALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred HHHhcccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 56666555 344589999999999999999999 99 668999999999999999888776653222 3455555555
Q ss_pred hccC
Q 026258 236 VSRR 239 (241)
Q Consensus 236 ~~~~ 239 (241)
++.|
T Consensus 212 Gs~R 215 (515)
T COG2812 212 GSLR 215 (515)
T ss_pred CChh
Confidence 5544
No 100
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.4e-16 Score=144.26 Aligned_cols=189 Identities=22% Similarity=0.278 Sum_probs=129.0
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE--
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK-- 96 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~-- 96 (241)
+.-++.++.+.+|++++|++.+++.|..++..- .-..++||+||+|+|||++++++|+.+++....
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~ 70 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP 70 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC
Confidence 344667788999999999999999999988631 234679999999999999999999998652110
Q ss_pred --Eech------hhc----------ccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHHH
Q 026258 97 --VVSS------AII----------DKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQR 154 (241)
Q Consensus 97 --v~~~------~~~----------~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~ 154 (241)
-.|. .+. ..........++.+...+.. ....|++|||+|.+ ....++
T Consensus 71 ~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~n 139 (620)
T PRK14948 71 TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFN 139 (620)
T ss_pred CCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHH
Confidence 0010 000 00011122344555544432 34579999999999 555555
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHh
Q 026258 155 TLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234 (241)
Q Consensus 155 ~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 234 (241)
.+...+++ ..+.+.+|++|++++.+.+.+++ |+ ..+.|+.++.++....++........ .++.+.+..++
T Consensus 140 aLLK~LEe-----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La 209 (620)
T PRK14948 140 ALLKTLEE-----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVA 209 (620)
T ss_pred HHHHHHhc-----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 66555553 33468888889888888889998 88 66899999888888777776665433 45666666666
Q ss_pred hhccCC
Q 026258 235 EVSRRG 240 (241)
Q Consensus 235 ~~~~~~ 240 (241)
+.+.++
T Consensus 210 ~~s~G~ 215 (620)
T PRK14948 210 QRSQGG 215 (620)
T ss_pred HHcCCC
Confidence 665443
No 101
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.73 E-value=1.5e-16 Score=134.39 Aligned_cols=186 Identities=23% Similarity=0.267 Sum_probs=128.4
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----c
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----N 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~-----~ 93 (241)
+.+|..++.|.+|++++|.+++++.+..++.. ....+++|+||+|||||++++++++.+.. .
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 45677788999999999999999999998853 22346999999999999999999998732 2
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHH-Hh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCC
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYA-RD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK 171 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~-~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 171 (241)
++.+++..... .......+....... .. ..+.+++|||+|.+ ....+..+..+++.. .+.
T Consensus 71 ~i~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~-----~~~ 132 (319)
T PRK00440 71 FLELNASDERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY-----SQN 132 (319)
T ss_pred eEEeccccccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC-----CCC
Confidence 34443322111 001111111111111 11 33569999999988 344455666665432 235
Q ss_pred eEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 172 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 172 ~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
+.+|++++.+..+.+.+.+ |+ ..+.+++++.++...+++.+++.... .++.+.+..+++.+.++
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGD 196 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCC
Confidence 6788888888888888888 77 46899999999999999988876544 56777888777766543
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.73 E-value=1.1e-16 Score=127.92 Aligned_cols=185 Identities=25% Similarity=0.355 Sum_probs=118.5
Q ss_pred CCCcccccc-c--hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEe
Q 026258 27 GNVSYSAVG-G--LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVV 98 (241)
Q Consensus 27 ~~~~~~~l~-g--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~ 98 (241)
+..+|++.+ | ++.+...+......+ + ...+.++|+||+|+|||+|++++++++ +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 566888864 4 444555555544321 1 234569999999999999999999876 55688888
Q ss_pred chhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 026258 99 SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (241)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 178 (241)
+..+..............-|.... ...++|+|||++.+.+ ....+..+..+++.+... +..+|+|+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~~~----~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAG---------KQRTQEELFHLFNRLIES----GKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHHHT----TSEEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcC---------chHHHHHHHHHHHHHHhh----CCeEEEEe
Confidence 877765433322221112222222 3558999999999943 345678888888876432 34566666
Q ss_pred C-CCC---CCChhccCCCCcce--EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 179 N-RPD---VLDPALLRPGRLDR--KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 179 ~-~~~---~l~~~l~~~~r~~~--~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
+ .|. .+.+.+.+ |+.. .+.+.+|+.+.|..|++.+...... .++.+++..+++...++
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~--~l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGI--ELPEEVIEYLARRFRRD 201 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSS
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhhcCC
Confidence 4 344 35677888 7655 8899999999999999998887666 58888888888877654
No 103
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.72 E-value=2.2e-16 Score=137.52 Aligned_cols=185 Identities=23% Similarity=0.357 Sum_probs=119.2
Q ss_pred CCCCcccc-ccchHH--HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEE
Q 026258 26 PGNVSYSA-VGGLSD--QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKV 97 (241)
Q Consensus 26 ~~~~~~~~-l~g~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v 97 (241)
.+..+|++ ++|.++ ++..+.++...+ + ...++++|+|++|+|||+|++++++++ +..++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 35678888 556444 333444433321 1 234579999999999999999999887 5678888
Q ss_pred echhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
++..+...............|.... ...++|+|||++.+.++ ...+..+..+++.+... +..+|++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~~~~~----~~~iiit 238 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK---------ERTQEEFFHTFNALHEN----GKQIVLT 238 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHHHC----CCCEEEe
Confidence 8777654332221111111122111 23579999999998542 23455666666654321 2345666
Q ss_pred eCC-CC---CCChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 178 TNR-PD---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 178 t~~-~~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
++. |. .+++.+++ ||. ..+.+++|+.++|.+|++..++.... .++.+.+..+++...+
T Consensus 239 s~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 239 SDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGL--ELPDEVLEFIAKNIRS 302 (405)
T ss_pred cCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCC
Confidence 654 43 36678888 775 47899999999999999999887543 6778888887776654
No 104
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.72 E-value=5.1e-16 Score=123.32 Aligned_cols=177 Identities=22% Similarity=0.329 Sum_probs=125.3
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEech
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~ 100 (241)
..+.+..+++|+|.+++++.|.+....++. | .+.+++||+|++|||||++++++..+. +..++.+...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 357789999999999999999999876633 2 567899999999999999999999877 5567777655
Q ss_pred hhcccccchHHHHHHHHHHHHH-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 101 AIIDKYIGESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
.+.. +..++.... ...+-|||+||+- ....+...+.+..+++.--. ....++.+.+|+|
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLs----------Fe~~d~~yk~LKs~LeGgle-~~P~NvliyATSN 149 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLS----------FEEGDTEYKALKSVLEGGLE-ARPDNVLIYATSN 149 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCC----------CCCCcHHHHHHHHHhcCccc-cCCCcEEEEEecc
Confidence 5532 224444444 2346799999962 22344455777777764221 3344788888888
Q ss_pred CCCCCCh---------------------hccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHH
Q 026258 180 RPDVLDP---------------------ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231 (241)
Q Consensus 180 ~~~~l~~---------------------~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~ 231 (241)
..+-+++ .+.=.+||+..+.|.+|+.++..+|++.++..... .++.+.+.
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~--~~~~e~l~ 220 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGL--ELDEEELR 220 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHH
Confidence 5432222 11112499999999999999999999999987655 44444443
No 105
>PRK06893 DNA replication initiation factor; Validated
Probab=99.72 E-value=3.2e-16 Score=126.22 Aligned_cols=181 Identities=14% Similarity=0.197 Sum_probs=113.4
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechh
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~ 101 (241)
.++..+|++.++.++.. .+..... .+....+..++|+||||||||+|++++|+++ +....++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~----------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRK----------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHH----------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 35778899988554422 1221111 1111233468999999999999999999886 34555555432
Q ss_pred hcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-C
Q 026258 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN-R 180 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~-~ 180 (241)
... .....+... .+.++|+|||++.+.+ +...+..+..+++.... .++..+|+|++ .
T Consensus 78 ~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~---~~~~illits~~~ 135 (229)
T PRK06893 78 SQY--------FSPAVLENL--EQQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE---QGKTLLLISADCS 135 (229)
T ss_pred hhh--------hhHHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCcEEEEeCCCC
Confidence 211 011222221 2457999999998843 23334567777766532 12334455554 4
Q ss_pred CCCCC---hhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 181 PDVLD---PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 181 ~~~l~---~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
|..++ +.++++.+++..+.++.|+.+++.+|++..+..... .++.+++..+++.+.++
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI--ELSDEVANFLLKRLDRD 196 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCC
Confidence 55443 678884344568899999999999999988865543 67888888888777654
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.3e-16 Score=138.35 Aligned_cols=188 Identities=14% Similarity=0.209 Sum_probs=125.4
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE--
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK-- 96 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~-- 96 (241)
+..+.....|.+|++++|++.+++.|..++.. + +.++.++|+||+|+||||+++.+|+.+.+.-..
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~ 70 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD 70 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCc
Confidence 44566778899999999999999999998853 1 334569999999999999999999998652100
Q ss_pred --------Eechh------hcc-------cccc---hHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCc
Q 026258 97 --------VVSSA------IID-------KYIG---ESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSA 148 (241)
Q Consensus 97 --------v~~~~------~~~-------~~~~---~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~ 148 (241)
-.|.. +.+ ...+ .....++.+...+ ......+++|||+|.+
T Consensus 71 ~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l----------- 139 (397)
T PRK14955 71 ADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML----------- 139 (397)
T ss_pred ccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------
Confidence 00100 000 0000 0112233333322 2234569999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHH
Q 026258 149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 228 (241)
Q Consensus 149 ~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~ 228 (241)
....++.+...+++ ..+.+.+|++++....+.+.+++ |+ ..+++++++.++....++..++.... .++.+
T Consensus 140 ~~~~~~~LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~ 209 (397)
T PRK14955 140 SIAAFNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGI--SVDAD 209 (397)
T ss_pred CHHHHHHHHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHH
Confidence 44444555555542 33467788888777888888888 77 46899999999988888887765433 56777
Q ss_pred HHHHHhhhccC
Q 026258 229 AVVKLAEVSRR 239 (241)
Q Consensus 229 ~l~~~~~~~~~ 239 (241)
.+..+++.+..
T Consensus 210 al~~l~~~s~g 220 (397)
T PRK14955 210 ALQLIGRKAQG 220 (397)
T ss_pred HHHHHHHHcCC
Confidence 77776665544
No 107
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.71 E-value=2e-16 Score=139.44 Aligned_cols=186 Identities=22% Similarity=0.339 Sum_probs=122.2
Q ss_pred CCCCcccccc-chH--HHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEE
Q 026258 26 PGNVSYSAVG-GLS--DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKV 97 (241)
Q Consensus 26 ~~~~~~~~l~-g~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v 97 (241)
.+..+|++.+ |.. .++..+.++...+ + ...++++|+||+|+|||+|++++++++ +..++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3566888844 433 3555555554322 1 233579999999999999999999988 4568888
Q ss_pred echhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
++..+...............|.... ..+++|+|||++.+.++ ...+..+..+++.+... +..+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~l~~~----~~~iiit 250 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK---------ERTQEEFFHTFNALHEA----GKQIVLT 250 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHHHC----CCcEEEE
Confidence 8877754433322211112232222 25689999999998442 23455666666654321 2235555
Q ss_pred eCC-CCC---CChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 178 TNR-PDV---LDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 178 t~~-~~~---l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
++. |.. +++.+++ ||. ..+.+.+|+.++|..|++..+..... .++.+.+..+++...++
T Consensus 251 s~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 251 SDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGI--DLPDEVLEFIAKNITSN 315 (450)
T ss_pred CCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcCcCCC
Confidence 554 433 6688888 885 47899999999999999998876433 67888888888776553
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.71 E-value=6.1e-16 Score=125.09 Aligned_cols=177 Identities=17% Similarity=0.254 Sum_probs=117.5
Q ss_pred CCCCCcccccc--chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEEec
Q 026258 25 DPGNVSYSAVG--GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVS 99 (241)
Q Consensus 25 ~~~~~~~~~l~--g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~---~~~~~v~~ 99 (241)
-++..+|++.+ ++..++..+.++... ....+++|+||+|||||+|++++++.+. ..+.++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 35667888866 456666666665432 2345899999999999999999998763 33455554
Q ss_pred hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
...... . ........ ..++|+|||++.+.+ +...+..+..+++.... .++..+|+|++
T Consensus 82 ~~~~~~----~----~~~~~~~~--~~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF----V----PEVLEGME--QLSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGD 139 (235)
T ss_pred HHHhhh----h----HHHHHHhh--hCCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCC
Confidence 442211 1 11111111 236999999999843 33445556666665422 23456777776
Q ss_pred CC-CC---CChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 180 RP-DV---LDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 180 ~~-~~---l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
.+ .. +.+.+++ |+. .++.+.+|+.+++.++++........ .++.+++..+++.+.++
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDRE 202 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCC
Confidence 54 33 5788999 775 58899999999999999986665443 67888888888877664
No 109
>PRK08727 hypothetical protein; Validated
Probab=99.71 E-value=7.8e-16 Score=124.30 Aligned_cols=175 Identities=22% Similarity=0.342 Sum_probs=116.2
Q ss_pred CCCCcccccc-chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechh
Q 026258 26 PGNVSYSAVG-GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (241)
Q Consensus 26 ~~~~~~~~l~-g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~ 101 (241)
++..+|++.+ |.++....+..... + ...+.++|+|++|||||+|++++++.+ +..+.++...+
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 4566888855 55555544443321 1 223569999999999999999998776 44555665444
Q ss_pred hcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-
Q 026258 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR- 180 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~- 180 (241)
... .+...+... ....+|+|||++.+.++ ...+..+..+++.... .+..+|+|++.
T Consensus 80 ~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~~----~~~~vI~ts~~~ 136 (233)
T PRK08727 80 AAG--------RLRDALEAL--EGRSLVALDGLESIAGQ---------REDEVALFDFHNRARA----AGITLLYTARQM 136 (233)
T ss_pred hhh--------hHHHHHHHH--hcCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHH----cCCeEEEECCCC
Confidence 321 122233222 34579999999988542 2334566667765532 14557887765
Q ss_pred CCC---CChhccCCCCc--ceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 181 PDV---LDPALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 181 ~~~---l~~~l~~~~r~--~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
|.. +.+.+++ |+ ...+.+++|+.+++.++++.++..... .++.+.+..+++.+.++
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERE 197 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCC
Confidence 443 4688888 76 457899999999999999987765433 67888888888877654
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5e-16 Score=140.06 Aligned_cols=188 Identities=14% Similarity=0.222 Sum_probs=126.7
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE--
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK-- 96 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~-- 96 (241)
+..+...+.|.+|++++|++.+++.|..++.. + .-++.+||+||+|+||||+++.+|+.+.+.-..
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~ 70 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDD 70 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCc
Confidence 44566778999999999999999999998853 1 334569999999999999999999999663100
Q ss_pred --------Eech------hhc-----c--cccc---hHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCc
Q 026258 97 --------VVSS------AII-----D--KYIG---ESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSA 148 (241)
Q Consensus 97 --------v~~~------~~~-----~--~~~~---~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~ 148 (241)
-.|. .+. + ...+ .....++.+...+ ......|++|||+|.+
T Consensus 71 ~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L----------- 139 (620)
T PRK14954 71 PVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML----------- 139 (620)
T ss_pred cccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------
Confidence 0010 000 0 0000 0012233333222 2344679999999998
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHH
Q 026258 149 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 228 (241)
Q Consensus 149 ~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~ 228 (241)
....++.+...+++ ..+.+++|++|+..+.+.+.+++ |+ ..+.|..++.++....+...++.... .++.+
T Consensus 140 t~~a~naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi--~I~~e 209 (620)
T PRK14954 140 STAAFNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGI--QIDAD 209 (620)
T ss_pred CHHHHHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCC--CCCHH
Confidence 44445555555553 22367788888888888888988 77 77999999999988888877765433 46666
Q ss_pred HHHHHhhhccC
Q 026258 229 AVVKLAEVSRR 239 (241)
Q Consensus 229 ~l~~~~~~~~~ 239 (241)
.+..+++.+..
T Consensus 210 al~~La~~s~G 220 (620)
T PRK14954 210 ALQLIARKAQG 220 (620)
T ss_pred HHHHHHHHhCC
Confidence 66666665544
No 111
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=2.8e-16 Score=137.65 Aligned_cols=185 Identities=17% Similarity=0.277 Sum_probs=118.8
Q ss_pred CCCCcccccc-chHH--HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEE
Q 026258 26 PGNVSYSAVG-GLSD--QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKV 97 (241)
Q Consensus 26 ~~~~~~~~l~-g~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v 97 (241)
.+..+|++.+ |-.+ +...+.+....+ ...++++|+||+|+|||+|++++++++ +..++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~------------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP------------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc------------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4667888855 5333 333333333211 123579999999999999999999986 3567888
Q ss_pred echhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
++..+...........-..-|....+..+++|+|||++.+.++ ...+..+..+++.+.. . +..+|++
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~---------~~~q~elf~~~n~l~~---~-~k~iIit 233 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK---------TGVQTELFHTFNELHD---S-GKQIVIC 233 (440)
T ss_pred EHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc---------HHHHHHHHHHHHHHHH---c-CCeEEEE
Confidence 8877654433222111112233333345789999999988542 2344555556655432 1 2345555
Q ss_pred e-CCCCC---CChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 178 T-NRPDV---LDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 178 t-~~~~~---l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
+ +.|.. +.+.+.+ ||. ..+.+.+|+.+.|.+|++..+..... .++.+.+..+++...+
T Consensus 234 sd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHG--ELPEEVLNFVAENVDD 297 (440)
T ss_pred CCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhcccc
Confidence 5 45543 5567877 764 47899999999999999988876433 5778888888877654
No 112
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.70 E-value=2.7e-16 Score=144.20 Aligned_cols=182 Identities=24% Similarity=0.351 Sum_probs=124.3
Q ss_pred cccCCCCCccccccchHHHHH---HHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 22 LHEDPGNVSYSAVGGLSDQIR---ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
+.....|.+|++++|++..+. .+.+.+.. ....+++|+|||||||||+++++++..+..++.++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 444567899999999999885 45555542 33458999999999999999999999998888887
Q ss_pred chhhcccccchHHHHHHHHHHHH-HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 99 SSAIIDKYIGESARLIREMFGYA-RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
+.... .......+....... ......+|+|||+|.+ ....+..+...++. +.+.+|++
T Consensus 85 a~~~~---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE~-------g~IiLI~a 143 (725)
T PRK13341 85 AVLAG---VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVEN-------GTITLIGA 143 (725)
T ss_pred hhhhh---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhcC-------ceEEEEEe
Confidence 65321 111111111111111 1234579999999999 45556666554432 35666665
Q ss_pred eCC-C-CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc-----cCCCCCCHHHHHHHhhhccCC
Q 026258 178 TNR-P-DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-----AKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 178 t~~-~-~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~ 240 (241)
|+. + ..+++++++ |+ ..+.+++++.+++..+++..+... ...-.++.+.+..+++.+..+
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 533 2 468889998 76 568999999999999999887631 112357888888888877543
No 113
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.70 E-value=8.4e-16 Score=132.21 Aligned_cols=182 Identities=25% Similarity=0.352 Sum_probs=119.0
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CceEEEechhh
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---------ANFLKVVSSAI 102 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~---------~~~~~v~~~~~ 102 (241)
++++|.+++++.|..++...+. + ..+.+++|+||||||||++++.+++.+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4789999999999999865321 1 3456799999999999999999998763 46788887654
Q ss_pred cccc--c-----------------c-hHHHHHHHHHHHHH-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 103 IDKY--I-----------------G-ESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 103 ~~~~--~-----------------~-~~~~~~~~~f~~~~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
.+.. . + .....+..++.... ...+.||+|||+|.+.+. . +..+..++.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhHhc
Confidence 3210 0 0 11222333444333 244679999999999521 1 123444443
Q ss_pred Hh-cCCCCCCCeEEEEEeCCCC---CCChhccCCCCcc-eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 162 QL-DGFDQLGKVKMIMATNRPD---VLDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 162 ~~-~~~~~~~~~~vI~tt~~~~---~l~~~l~~~~r~~-~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
.. .......++.+|+++|.+. .+++.+.+ ||. ..+.|++++.++..+|++.++........++.+.+..+++
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA 231 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence 21 1112234789999998875 57777777 774 5789999999999999999886322223355555444433
No 114
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.70 E-value=1e-15 Score=139.38 Aligned_cols=182 Identities=19% Similarity=0.244 Sum_probs=127.4
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEEechh
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVSSA 101 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v~~~~ 101 (241)
+.|.|.++++++|..++...+. +-.+++.++|+|+||||||++++.+++++ ...+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6799999999999999976432 21233446799999999999999998876 25578899855
Q ss_pred hcccc-----------------cchHHHHHHHHHHHHHh--CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 102 IIDKY-----------------IGESARLIREMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 102 ~~~~~-----------------~~~~~~~~~~~f~~~~~--~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
+.... .......+..+|..... ....||+|||+|.|.. ..+..|+.++..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k-----------K~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT-----------KTQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-----------cHHHHHHHHHHH
Confidence 43211 00122334445544321 2346999999999943 134667777765
Q ss_pred hcCCCCCCCeEEEEEeCC---CCCCChhccCCCCcce-EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 163 LDGFDQLGKVKMIMATNR---PDVLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~---~~~l~~~l~~~~r~~~-~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.. .....+.+|+++|+ ++.+++.+++ ||.. .+.|++++.+++.+||+.++... ...++.++|..+++.++
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVA 969 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhh
Confidence 43 22347888899886 3466778888 7755 58889999999999999998764 34578888888887543
No 115
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.70 E-value=5.2e-16 Score=143.88 Aligned_cols=188 Identities=23% Similarity=0.338 Sum_probs=130.5
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc--------
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-------- 104 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-------- 104 (241)
+..|++++|+++.+++.... ..+-..+..++|+||||+|||++++.+|+.++.+++.+++....+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~-------~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQS-------RVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHH-------hcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 48999999999999887421 111134567999999999999999999999999999988665432
Q ss_pred -cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc------CC----CCCCCeE
Q 026258 105 -KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------GF----DQLGKVK 173 (241)
Q Consensus 105 -~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~----~~~~~~~ 173 (241)
.+.+.....+.+.+..+.... .|++|||+|.+.... ....+..+.++++.-. .+ ..-+++.
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~-------~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDM-------RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhccccc-------CCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 123333333444444433334 489999999994321 1123567777776311 00 1225888
Q ss_pred EEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHc--Cc---c---CCCCCCHHHHHHHhhhccC
Q 026258 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA--GI---A---KHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 174 vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~--~~---~---~~~~~~~~~l~~~~~~~~~ 239 (241)
+|+|+|.. .+++++++ || ..+.+..++.++..+|.+.++- .. . ..-.++.+.+..+++.+.+
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~ 537 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR 537 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCc
Confidence 99988876 59999999 99 6799999999999999998773 11 1 1124677888888776654
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6.9e-16 Score=139.73 Aligned_cols=180 Identities=18% Similarity=0.258 Sum_probs=124.0
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-----
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF----- 94 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~----- 94 (241)
..+..++.+.+|++++|++.+++.|..++..- ..++.+||+||+|+|||++++.+++.+++..
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~ 71 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG 71 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 34557889999999999999999999888531 3345689999999999999999999885321
Q ss_pred --------------------EEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 95 --------------------LKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 95 --------------------~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
+.++... ......++.+...+. .....|++|||+|.+ ..
T Consensus 72 ~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~ 134 (585)
T PRK14950 72 RPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------ST 134 (585)
T ss_pred CCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CH
Confidence 1111110 011122233322222 244679999999998 44
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
...+.+...+++ ..+++.+|++++..+.+.+.+++ |+ ..+.|+.++..+...+++..++.... .++.+.+
T Consensus 135 ~a~naLLk~LEe-----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal 204 (585)
T PRK14950 135 AAFNALLKTLEE-----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGAL 204 (585)
T ss_pred HHHHHHHHHHhc-----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 445555555543 22467888888888888888888 77 56899999999999888887766543 4666666
Q ss_pred HHHhhhcc
Q 026258 231 VKLAEVSR 238 (241)
Q Consensus 231 ~~~~~~~~ 238 (241)
..+++.+.
T Consensus 205 ~~La~~s~ 212 (585)
T PRK14950 205 EAIARAAT 212 (585)
T ss_pred HHHHHHcC
Confidence 66665554
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.69 E-value=1.2e-15 Score=122.92 Aligned_cols=168 Identities=20% Similarity=0.257 Sum_probs=115.3
Q ss_pred CCCCcccccc--chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEech
Q 026258 26 PGNVSYSAVG--GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (241)
Q Consensus 26 ~~~~~~~~l~--g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~ 100 (241)
.++.+|++.+ +.+..+..+.++.. +.....+++|+|++|||||+|++++++.. +..++.+++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4567888866 44566666666543 12445689999999999999999999876 5677888776
Q ss_pred hhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
..... + ......++|+|||+|.+ +...+..+..+++.... .+...+|++++.
T Consensus 80 ~~~~~------------~--~~~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~~---~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLA------------F--DFDPEAELYAVDDVERL-----------DDAQQIALFNLFNRVRA---HGQGALLVAGPA 131 (227)
T ss_pred HhHHH------------H--hhcccCCEEEEeChhhc-----------CchHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 65311 1 11234579999999988 34456677777765532 223345555543
Q ss_pred CC---CCChhccCCCCc--ceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 181 PD---VLDPALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 181 ~~---~l~~~l~~~~r~--~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
+. .+.+.+.+ || ...+.+++|+.+.+..+++........ .++.+.+..+.+..
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~ 189 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHF 189 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhc
Confidence 32 35566776 66 468999999999999999877665543 66788888887743
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=2.3e-15 Score=134.34 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=125.5
Q ss_pred CCCCcccccc-chHH--HHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEE
Q 026258 26 PGNVSYSAVG-GLSD--QIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKV 97 (241)
Q Consensus 26 ~~~~~~~~l~-g~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v 97 (241)
.+..+|++.+ |..+ ....+...+.. .+ ...+.++|+|++|+|||+|++++++++ +..++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEA----------PA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhC----------cc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 3556888865 4433 23334443332 12 223469999999999999999999987 4578888
Q ss_pred echhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
.+..+.+.+...........|... ....++|+|||++.+.+ +...+..++.+++.+... +..+|+|
T Consensus 351 taeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~g---------ke~tqeeLF~l~N~l~e~----gk~IIIT 416 (617)
T PRK14086 351 SSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLED---------KESTQEEFFHTFNTLHNA----NKQIVLS 416 (617)
T ss_pred eHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccC---------CHHHHHHHHHHHHHHHhc----CCCEEEe
Confidence 888776554333322222233322 23468999999999854 334456677777765421 3346667
Q ss_pred eCCC-C---CCChhccCCCCc--ceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 178 TNRP-D---VLDPALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 178 t~~~-~---~l~~~l~~~~r~--~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
++.+ . .+++.|++ || +..+.+..|+.+.|.+||+.++....+ .++.+++..+++...+.
T Consensus 417 Sd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l--~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 417 SDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQL--NAPPEVLEFIASRISRN 481 (617)
T ss_pred cCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhccCC
Confidence 7654 2 57788999 66 557899999999999999998887655 67888888888776654
No 119
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=2e-15 Score=132.07 Aligned_cols=190 Identities=17% Similarity=0.247 Sum_probs=123.0
Q ss_pred CCCCcccccc-chHHH--HHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 26 PGNVSYSAVG-GLSDQ--IRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 26 ~~~~~~~~l~-g~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
.+..+|++.+ |-.+. ...+.++...+- ..+-...++++|+||+|+|||+|++++++++ +..++++..
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~-------~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE-------QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc-------cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 4667888855 53333 344544443210 0000123679999999999999999999877 577888887
Q ss_pred hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
..+...............|.... ...++|+|||++.+.+ ....+..+..+++.+.. . +..+|+|++
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~---------k~~~qeelf~l~N~l~~---~-~k~IIlts~ 243 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSG---------KGATQEEFFHTFNSLHT---E-GKLIVISST 243 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcC---------ChhhHHHHHHHHHHHHH---C-CCcEEEecC
Confidence 66654332222111112233222 3567999999998843 23345566666664422 1 335677765
Q ss_pred C-CC---CCChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 180 R-PD---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 180 ~-~~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
. |. .+++.+.+ ||. ..+.+++|+.+.|..|++..+..... .++.+++..+++...++
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 5 33 46788888 884 68899999999999999998877543 67888888888776654
No 120
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2e-15 Score=136.73 Aligned_cols=181 Identities=19% Similarity=0.237 Sum_probs=128.0
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------ 93 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------ 93 (241)
-.+..++.|.+|++++|++.+++.|..++.. + ..++.+||+||+|+|||++++.+|+.+.+.
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~ 72 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADG 72 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC
Confidence 3445677889999999999999999999853 1 334569999999999999999999988532
Q ss_pred -------------------eEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 -------------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 -------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
++.++..+. .....++.+...+. .....|++|||+|.+ +.
T Consensus 73 ~~Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~ 135 (614)
T PRK14971 73 EACNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQ 135 (614)
T ss_pred CCCCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CH
Confidence 222222110 01122333333332 234569999999999 55
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++. .+++.+|++|+....+.+.+++ |+ ..+.|.+++.++....++..+..... .++.+.+
T Consensus 136 ~a~naLLK~LEep-----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al 205 (614)
T PRK14971 136 AAFNAFLKTLEEP-----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGI--TAEPEAL 205 (614)
T ss_pred HHHHHHHHHHhCC-----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 5666666666642 2367888888888889999999 88 66999999999999888887766554 4566666
Q ss_pred HHHhhhccC
Q 026258 231 VKLAEVSRR 239 (241)
Q Consensus 231 ~~~~~~~~~ 239 (241)
..+++.+.+
T Consensus 206 ~~La~~s~g 214 (614)
T PRK14971 206 NVIAQKADG 214 (614)
T ss_pred HHHHHHcCC
Confidence 666655543
No 121
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.66 E-value=4.7e-15 Score=121.82 Aligned_cols=137 Identities=25% Similarity=0.340 Sum_probs=97.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc------cccchHHH-HHHH-------------------HH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------KYIGESAR-LIRE-------------------MF 118 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~------~~~~~~~~-~~~~-------------------~f 118 (241)
.+.+++|.||||||||++++++|..++.+++.++|..... .+.+.... .... .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3568999999999999999999999999999998765321 11110000 0000 01
Q ss_pred HHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc----CC-------CCCCCeEEEEEeCCCC-----
Q 026258 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD----GF-------DQLGKVKMIMATNRPD----- 182 (241)
Q Consensus 119 ~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~-------~~~~~~~vI~tt~~~~----- 182 (241)
..+. ..+.+|++||++.+ ++..+..+..++++.. +. ...+++++|+|+|...
T Consensus 100 ~~A~-~~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 100 TLAV-REGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHH-HcCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 1112 23469999999998 7888899988887532 00 1224788999999752
Q ss_pred CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 183 VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 183 ~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
.+++++.+ || ..+.++.|+.++..+|++.+.
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888998 88 678999999999999999875
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.66 E-value=2.4e-15 Score=120.97 Aligned_cols=173 Identities=21% Similarity=0.323 Sum_probs=116.4
Q ss_pred CCCCcccccc--chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEech
Q 026258 26 PGNVSYSAVG--GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (241)
Q Consensus 26 ~~~~~~~~l~--g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~ 100 (241)
+.+.+|++.+ +.+..++++++++.. ..+.+++|+||+|||||++++++++.+ +.+++++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 3445677765 466788888877531 446789999999999999999999877 4678888888
Q ss_pred hhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
.+.... ...+... ....+|+|||++.+.. +...+..+..+++..... +..+|++++.
T Consensus 76 ~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~~----~~~iIits~~ 132 (226)
T TIGR03420 76 ELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG---------QPEWQEALFHLYNRVREA----GGRLLIAGRA 132 (226)
T ss_pred HHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHHc----CCeEEEECCC
Confidence 775321 1222222 2346999999999821 112355666666654321 2356666654
Q ss_pred -CCCCC---hhccCCCCc--ceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 181 -PDVLD---PALLRPGRL--DRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 181 -~~~l~---~~l~~~~r~--~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+..+. +.+.+ |+ ...+.+++|+.+++..+++.+...... .++.+.+..+++...
T Consensus 133 ~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~ 192 (226)
T TIGR03420 133 APAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGS 192 (226)
T ss_pred ChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcc
Confidence 33322 56666 65 467899999999999999987764433 567888888877543
No 123
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2e-15 Score=137.17 Aligned_cols=190 Identities=25% Similarity=0.369 Sum_probs=152.9
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLK 96 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~ 96 (241)
..-.++-++|.++.++++.+.+.. +..++-++.|+||+|||.++..+|... +..++.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 445678899999999999999975 455678899999999999999999877 566888
Q ss_pred Eechhhcc--cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 97 VVSSAIID--KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 97 v~~~~~~~--~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
.+.+.+.. ++.|+.+..++.+...+....+.||||||+|.+.|.+...+. .-...+.+.-.+. .+...+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLA-------RGeL~~ 302 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALA-------RGELRC 302 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHh-------cCCeEE
Confidence 88888764 789999999999999999888899999999999988754332 2333344444443 347889
Q ss_pred EEEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCC--CHHHHHHHhhhccCCC
Q 026258 175 IMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI--DYEAVVKLAEVSRRGL 241 (241)
Q Consensus 175 I~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 241 (241)
|++|...+ +-|+++-+ || ..|.+..|+.++-..||+.+-..+..++.| ..++|...+.++.+.|
T Consensus 303 IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred EEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 98886543 45788999 99 668999999999999999988887777764 6788888888887654
No 124
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=7.2e-15 Score=127.70 Aligned_cols=187 Identities=21% Similarity=0.337 Sum_probs=122.1
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEechhhc
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSAII 103 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~~~~~~ 103 (241)
...+.++|.++.++++...+...+. + ..+.+++|+||||+|||++++.+++.+ +..+++++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 3446799999999999999864321 1 344679999999999999999999887 4678888876442
Q ss_pred cc----------cc-------c-hHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 104 DK----------YI-------G-ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 104 ~~----------~~-------~-~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
+. .. + .....+..+...... ..+.||+|||+|.+.... .. ..+..++....
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~---~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GN---DVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------Cc---hHHHHHHHhhh
Confidence 21 00 0 112223333333332 345799999999995211 11 23444444333
Q ss_pred CCCCCCCeEEEEEeCCCC---CCChhccCCCCcc-eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 165 GFDQLGKVKMIMATNRPD---VLDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~---~l~~~l~~~~r~~-~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
... ..++.+|+++|... .+++.+.+ |+. ..+.+++++.++..+|++.+++.......++.+.+..+++.+
T Consensus 168 ~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 168 EYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLT 241 (394)
T ss_pred ccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHH
Confidence 222 22688999988753 46666766 553 478999999999999999888653323355666666665544
No 125
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.66 E-value=8.5e-16 Score=119.98 Aligned_cols=180 Identities=19% Similarity=0.217 Sum_probs=124.8
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----ceEE
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLK 96 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~-----~~~~ 96 (241)
|-.++.|..++|++|+++.+.++.-.... ..-.+++|.||||+||||-+.++|+++-. .+.+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 44558999999999999999999887743 33458999999999999999999998833 2455
Q ss_pred EechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 97 VVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
.+.++-.+ .+.....+ +.|+.-+. .+..|+++||+|.+ ....|.++.+.++.... ..
T Consensus 84 LNASdeRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiyS~-----tt 144 (333)
T KOG0991|consen 84 LNASDERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIYSN-----TT 144 (333)
T ss_pred ccCccccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHHcc-----cc
Confidence 55544321 11222222 44554443 33459999999999 66678888888876543 68
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhh
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEV 236 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~ 236 (241)
++.++||....+-+++++ || -.+.+...+..+...-+....+...+. .+..++.+..-+++
T Consensus 145 RFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 899999999999999999 88 445666666666555444444444443 23345665554444
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.65 E-value=3.6e-15 Score=135.48 Aligned_cols=186 Identities=23% Similarity=0.329 Sum_probs=127.6
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCce
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANF 94 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~ 94 (241)
...+.+|++++|++..++.+...+.. ..+.+++|+|||||||||+++.+++.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 34578999999999999998777643 234579999999999999999998765 3568
Q ss_pred EEEechhhcc-------cccchHH----HHHHHHHH----------HHHhCCCeEEEEcCcccccCCCCCCCCCccHHHH
Q 026258 95 LKVVSSAIID-------KYIGESA----RLIREMFG----------YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (241)
Q Consensus 95 ~~v~~~~~~~-------~~~~~~~----~~~~~~f~----------~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~ 153 (241)
+.+++..+.. ...+... ...+..+. .....+.++|||||++.+ +...+
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHH
Confidence 8888765421 0011000 00001111 111234579999999998 78888
Q ss_pred HHHHHHHHHhc-----C-C-----------------CCCCCeEEEEEe-CCCCCCChhccCCCCcceEEEcCCCCHHHHH
Q 026258 154 RTLMELLNQLD-----G-F-----------------DQLGKVKMIMAT-NRPDVLDPALLRPGRLDRKIEIPLPNEQSRM 209 (241)
Q Consensus 154 ~~l~~ll~~~~-----~-~-----------------~~~~~~~vI~tt-~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~ 209 (241)
..+..+++.-. + + .....+++|++| ++++.+++++++ ||. .+.+++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 88888886521 0 0 011135555544 567789999998 884 6789999999999
Q ss_pred HHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 210 EILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 210 ~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
.|++..+..... .++.+.+..+.++.+.
T Consensus 360 ~Il~~~a~~~~v--~ls~eal~~L~~ys~~ 387 (615)
T TIGR02903 360 LIVLNAAEKINV--HLAAGVEELIARYTIE 387 (615)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHCCCc
Confidence 999998876533 4667777777777654
No 127
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.65 E-value=4.4e-15 Score=136.90 Aligned_cols=182 Identities=23% Similarity=0.340 Sum_probs=127.5
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCC----CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc---
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGI----KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--- 105 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~--- 105 (241)
.|+|++++++.+.+.+... +.|+ .+..+++|+||||||||.+++++|+.++.+++.++++.+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 3789999999999998753 2232 233579999999999999999999999999999998876431
Q ss_pred --ccch----HH-HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC------CCCCe
Q 026258 106 --YIGE----SA-RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLGKV 172 (241)
Q Consensus 106 --~~~~----~~-~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~~ 172 (241)
..|. .. ..-..+...+..+..+||+|||+|.+ ++..++.+.++++.-.-.. ...++
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 1110 00 00011223344556789999999999 7888889988887532111 11367
Q ss_pred EEEEEeCCC-------------------------CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC-------cc
Q 026258 173 KMIMATNRP-------------------------DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-------IA 220 (241)
Q Consensus 173 ~vI~tt~~~-------------------------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~-------~~ 220 (241)
.+|+|||.- ..+.+.+.. |++..+.|++++.++..+|+...+.+ ..
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 799998832 124466667 99999999999999999998866543 22
Q ss_pred CCCCCCHHHHHHHhh
Q 026258 221 KHGEIDYEAVVKLAE 235 (241)
Q Consensus 221 ~~~~~~~~~l~~~~~ 235 (241)
..-.++.+.+..+++
T Consensus 678 i~l~~~~~~~~~l~~ 692 (758)
T PRK11034 678 VSLEVSQEARDWLAE 692 (758)
T ss_pred CCceECHHHHHHHHH
Confidence 333556777776664
No 128
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.64 E-value=1.2e-14 Score=108.07 Aligned_cols=141 Identities=44% Similarity=0.695 Sum_probs=96.1
Q ss_pred cchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHH
Q 026258 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESA 111 (241)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~ 111 (241)
+|+++.++.+...+.. ..+.+++|+||||||||++++.+++.+ +..++.+++............
T Consensus 1 ~~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 1 VGQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred CchHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 3667777888777642 245689999999999999999999998 888999988776543222211
Q ss_pred HH---HHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCC--CCC
Q 026258 112 RL---IREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-DQLGKVKMIMATNRPD--VLD 185 (241)
Q Consensus 112 ~~---~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~~~~~vI~tt~~~~--~l~ 185 (241)
.. ....+.......+.+|++||++.+ .......+..++...... ....++.+|++++... .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 11 112233344566889999999887 344445555555554321 0134788999998776 677
Q ss_pred hhccCCCCcceEEEcC
Q 026258 186 PALLRPGRLDRKIEIP 201 (241)
Q Consensus 186 ~~l~~~~r~~~~i~l~ 201 (241)
+.+.+ ||...+.++
T Consensus 137 ~~~~~--r~~~~i~~~ 150 (151)
T cd00009 137 RALYD--RLDIRIVIP 150 (151)
T ss_pred hhHHh--hhccEeecC
Confidence 77877 887777665
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=99.64 E-value=2.6e-14 Score=115.47 Aligned_cols=148 Identities=18% Similarity=0.321 Sum_probs=101.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~ 142 (241)
.++++|+|++|+|||+|++++++++ +..+++++..++.... ........ ..++|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcC---
Confidence 3679999999999999999999765 5567777776664321 11222222 236999999998843
Q ss_pred CCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-CCC---CCChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhH
Q 026258 143 SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN-RPD---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 143 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~-~~~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~ 216 (241)
.+..+..+..+++.... . +..+|++++ .|. ...+.+++ ||. ..+.+.+|+.+++.++++...
T Consensus 112 ------~~~~~~~Lf~l~n~~~~---~-g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 112 ------KADWEEALFHLFNRLRD---S-GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred ------ChHHHHHHHHHHHHHHh---c-CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 23345667777766532 1 334555554 343 23578888 774 577889999999999999666
Q ss_pred cCccCCCCCCHHHHHHHhhhccCC
Q 026258 217 AGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
..... .++.+++..+++...++
T Consensus 180 ~~~~~--~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 180 SRRGL--HLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHcCC--CCCHHHHHHHHHhcCCC
Confidence 55433 67888888888877664
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.4e-14 Score=127.11 Aligned_cols=158 Identities=16% Similarity=0.270 Sum_probs=111.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEechhhcccccchHHH---HHHHHHHHHHhCCCeEEEEcCcccc
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSAIIDKYIGESAR---LIREMFGYARDHQPCIIFMDEIDAI 137 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~~vl~lDe~d~l 137 (241)
.++++|+|++|+|||+|++++++.+ +..++++.+..+.......... .+.. |.. +....++|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~-~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKN-EICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHH-HhccCCEEEEeccccc
Confidence 3579999999999999999999865 4567888887776544333222 1111 211 1235679999999988
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-C---CCChhccCCCCcc--eEEEcCCCCHHHHHHH
Q 026258 138 GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-D---VLDPALLRPGRLD--RKIEIPLPNEQSRMEI 211 (241)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~-~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~i 211 (241)
.+ ....+..+..+++.+... +..+|+|++.+ + .+++.+.+ ||. ..+.+.+|+.++|.+|
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~~----~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIEN----DKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHHc----CCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 43 345667777777765432 23577777654 2 46678888 774 4788999999999999
Q ss_pred HHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 212 LKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 212 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
++..++.......++.+++..+++.+.++
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd 312 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSDD 312 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCCC
Confidence 99988765432367888988888877654
No 131
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.63 E-value=1.4e-14 Score=125.34 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=128.5
Q ss_pred cccc-ccchHHHHHHHHHHhhcccCChHHHHh---cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-
Q 026258 30 SYSA-VGGLSDQIRELRESIELPLMNPELFLR---VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID- 104 (241)
Q Consensus 30 ~~~~-l~g~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~- 104 (241)
.+++ ++|++++++.+..++.+.++....... -......+++|+||||||||++++++|..++.+|+.+++..+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3444 899999999998777543222110000 00123468999999999999999999999999999999887642
Q ss_pred cccchH-HHHHHHHHHH----HHhCCCeEEEEcCcccccCCCCCC---CCCccHHHHHHHHHHHHHhc------C--CCC
Q 026258 105 KYIGES-ARLIREMFGY----ARDHQPCIIFMDEIDAIGGRRFSE---GTSADREIQRTLMELLNQLD------G--FDQ 168 (241)
Q Consensus 105 ~~~~~~-~~~~~~~f~~----~~~~~~~vl~lDe~d~l~~~~~~~---~~~~~~~~~~~l~~ll~~~~------~--~~~ 168 (241)
.+.+.. ...+...+.. .....++||||||+|.+..+..++ .+.+....|..+.++++... + ...
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 344432 3333333322 234567899999999997653221 12223468888888886321 0 011
Q ss_pred CCCeEEEEEeCCC-----------------------------C-----------------------CCChhccCCCCcce
Q 026258 169 LGKVKMIMATNRP-----------------------------D-----------------------VLDPALLRPGRLDR 196 (241)
Q Consensus 169 ~~~~~vI~tt~~~-----------------------------~-----------------------~l~~~l~~~~r~~~ 196 (241)
....++|.|+|-. . .+.|.+.. |++.
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~ 305 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPV 305 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCe
Confidence 1234445544430 0 02344444 8888
Q ss_pred EEEcCCCCHHHHHHHHH----HhHcC-------ccCCCCCCHHHHHHHhhh
Q 026258 197 KIEIPLPNEQSRMEILK----IHAAG-------IAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 197 ~i~l~~p~~~~r~~il~----~~~~~-------~~~~~~~~~~~l~~~~~~ 236 (241)
.+.|.+++.+...+|+. .++++ ....-.++.+++..+++.
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 99999999999999997 23322 222225677888888775
No 132
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-14 Score=124.11 Aligned_cols=183 Identities=21% Similarity=0.353 Sum_probs=133.1
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----eEEEechhhcccc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-----FLKVVSSAIIDKY 106 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-----~~~v~~~~~~~~~ 106 (241)
+.+.+.+++++++..++..++.+ ..+.+++++|+||||||++++.+++++... +++++|....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 44899999999999998765322 555679999999999999999999999444 8999987765422
Q ss_pred c----------------chHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC
Q 026258 107 I----------------GESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (241)
Q Consensus 107 ~----------------~~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 169 (241)
. .........++..... ...-|++|||+|.|+... +..++.++...... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-----------~~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-----------GEVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-----------chHHHHHHhhcccc--c
Confidence 0 0112222333333322 345699999999996542 15666776554432 3
Q ss_pred CCeEEEEEeCCCC---CCChhccCCCCcce-EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 170 GKVKMIMATNRPD---VLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 170 ~~~~vI~tt~~~~---~l~~~l~~~~r~~~-~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.++.+|+.+|+.+ .+++.+.+ +++. .|.|++++.+|...|++.+.........++...+..++..++
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a 225 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA 225 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 4678888888863 68888888 5544 689999999999999999998877777788888877776553
No 133
>PRK06620 hypothetical protein; Validated
Probab=99.62 E-value=1.3e-14 Score=115.46 Aligned_cols=165 Identities=16% Similarity=0.219 Sum_probs=104.8
Q ss_pred CCCCcccccc-c--hHHHHHHHHHHhhcccCChHHHHhcCCCC-CceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 26 PGNVSYSAVG-G--LSDQIRELRESIELPLMNPELFLRVGIKP-PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 26 ~~~~~~~~l~-g--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
.+..+|++++ | ++.+...+.++... ++..+ .+.++|+||+|||||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 4566788844 3 34456666655432 22222 2679999999999999999999877643322 110
Q ss_pred hcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
. ....+ ...++|+|||+|.+ .. ..+..+++.+.. .++..++.++..|
T Consensus 78 ~-----------~~~~~-----~~~d~lliDdi~~~-----------~~---~~lf~l~N~~~e---~g~~ilits~~~p 124 (214)
T PRK06620 78 F-----------NEEIL-----EKYNAFIIEDIENW-----------QE---PALLHIFNIINE---KQKYLLLTSSDKS 124 (214)
T ss_pred h-----------chhHH-----hcCCEEEEeccccc-----------hH---HHHHHHHHHHHh---cCCEEEEEcCCCc
Confidence 0 00111 12379999999855 11 244455554432 2244444444444
Q ss_pred CC--CChhccCCCCcce--EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 182 DV--LDPALLRPGRLDR--KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 182 ~~--l~~~l~~~~r~~~--~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
.. + +++++ |+.. .+.+.+|+.+.+..+++........ .++.+++..+++.+.++
T Consensus 125 ~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l--~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 125 RNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSV--TISRQIIDFLLVNLPRE 182 (214)
T ss_pred cccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCC
Confidence 43 5 77888 7743 7899999999999999988876443 57888888888877664
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.62 E-value=1.6e-14 Score=134.09 Aligned_cols=181 Identities=26% Similarity=0.397 Sum_probs=128.2
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCC----CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc---
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIK----PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--- 105 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~--- 105 (241)
.++|++++++.+.+.+... +.|+. +..+++|+||+|||||++++++|+.++..++.++++.+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4789999999998888643 33432 23468999999999999999999999999999998876432
Q ss_pred ---------ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC------CCC
Q 026258 106 ---------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLG 170 (241)
Q Consensus 106 ---------~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~ 170 (241)
+.+... ...+...++.+..+|++|||+|.+ ++..+..+.++++.-.-.. ...
T Consensus 527 ~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred HHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCC
Confidence 111111 112333345567789999999998 7888888888887532111 112
Q ss_pred CeEEEEEeCCCC-------------------------CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc------
Q 026258 171 KVKMIMATNRPD-------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI------ 219 (241)
Q Consensus 171 ~~~vI~tt~~~~-------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~------ 219 (241)
++.+|+|||... .+.+.+.. |++.++.|.+++.++..+|++..+.+.
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~ 671 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE 671 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 677888887531 13456666 999999999999999999999776542
Q ss_pred -cCCCCCCHHHHHHHhhh
Q 026258 220 -AKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 220 -~~~~~~~~~~l~~~~~~ 236 (241)
...-.++.+.+..+++.
T Consensus 672 ~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 672 KNIKLELTDDAKKYLAEK 689 (731)
T ss_pred CCCeEEeCHHHHHHHHHh
Confidence 11224577777777763
No 135
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.62 E-value=2.9e-15 Score=124.63 Aligned_cols=140 Identities=16% Similarity=0.247 Sum_probs=103.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc--ccchHHHHH----------HHHHHHHHhCCCeEEEEc
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--YIGESARLI----------REMFGYARDHQPCIIFMD 132 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~--~~~~~~~~~----------~~~f~~~~~~~~~vl~lD 132 (241)
.+.+++|.|+||||||++++.+|+.++.+++.+++...... ..|.....+ ...+..+.. .+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 35689999999999999999999999999999998776543 222211000 011222222 45789999
Q ss_pred CcccccCCCCCCCCCccHHHHHHHHHHHHHh---------cCCCCCCCeEEEEEeCCCC------------CCChhccCC
Q 026258 133 EIDAIGGRRFSEGTSADREIQRTLMELLNQL---------DGFDQLGKVKMIMATNRPD------------VLDPALLRP 191 (241)
Q Consensus 133 e~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~---------~~~~~~~~~~vI~tt~~~~------------~l~~~l~~~ 191 (241)
|+|.. .+..+..+..+++.- ..+...+.+++|+|+|... .+++++++
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99998 788888888888731 1122445789999999743 46889988
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHhHcC
Q 026258 192 GRLDRKIEIPLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 192 ~r~~~~i~l~~p~~~~r~~il~~~~~~ 218 (241)
||..++.+++|+.++..+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99778899999999999999876544
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=7.5e-14 Score=118.69 Aligned_cols=179 Identities=20% Similarity=0.218 Sum_probs=119.7
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------eEE
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------FLK 96 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-------~~~ 96 (241)
-.+.|..+++|+|.++++..+..++.. | .-++.+||+||+|+|||++++.+|+.+... ...
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~ 82 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL 82 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc
Confidence 347899999999999999999999853 1 334569999999999999999999988541 100
Q ss_pred E-e---ch---hh----------c-cc--cc-----c-hHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCC
Q 026258 97 V-V---SS---AI----------I-DK--YI-----G-ESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGT 146 (241)
Q Consensus 97 v-~---~~---~~----------~-~~--~~-----~-~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~ 146 (241)
. . |. .+ . .. .. . -....++.+.... ......|++|||+|.+
T Consensus 83 ~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l--------- 153 (351)
T PRK09112 83 ADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM--------- 153 (351)
T ss_pred CCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc---------
Confidence 0 0 00 00 0 00 00 0 0012222222222 2234669999999999
Q ss_pred CccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCC
Q 026258 147 SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID 226 (241)
Q Consensus 147 ~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~ 226 (241)
+...++.+...+++- ..+..+|++|+.+..+.+.+++ |+ ..+.+++|+.++..++++...... .++
T Consensus 154 --~~~aanaLLk~LEEp-----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~----~~~ 219 (351)
T PRK09112 154 --NRNAANAILKTLEEP-----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ----GSD 219 (351)
T ss_pred --CHHHHHHHHHHHhcC-----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc----CCC
Confidence 666667776666542 2367778888889889999999 98 689999999999999998743221 145
Q ss_pred HHHHHHHhhhc
Q 026258 227 YEAVVKLAEVS 237 (241)
Q Consensus 227 ~~~l~~~~~~~ 237 (241)
.+.+..+.+.+
T Consensus 220 ~~~~~~i~~~s 230 (351)
T PRK09112 220 GEITEALLQRS 230 (351)
T ss_pred HHHHHHHHHHc
Confidence 55555444443
No 137
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.61 E-value=5.1e-14 Score=118.69 Aligned_cols=152 Identities=15% Similarity=0.234 Sum_probs=107.8
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------eEEEechh
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--------FLKVVSSA 101 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--------~~~v~~~~ 101 (241)
+|++++|++.+++.+...+.. + .-++.++|+||+|+|||++++.+++.+.+. +..+....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 689999999999999998853 1 344678999999999999999999977332 22222210
Q ss_pred hcccccchHHHHHHHHHHH----HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 102 IIDKYIGESARLIREMFGY----ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~----~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
+... ....++.+... .......|++||++|.+ +...++.+...+++ +.+++.+|++
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 1111 11223333332 22345679999999998 56566666666653 3357888888
Q ss_pred eCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 178 TNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 178 t~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
|++++.+.+.+++ |+ ..+.++.|+.++....++...
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8889999999999 88 679999999998887776554
No 138
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.60 E-value=8e-14 Score=109.40 Aligned_cols=171 Identities=19% Similarity=0.280 Sum_probs=123.8
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEech
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~ 100 (241)
+.+++.++.+|+|.+.+++.|.+....++. | .+.+++|++|..|||||+++|++.++. +..+++|+..
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 456778999999999999999988876532 3 566889999999999999999999888 5667788766
Q ss_pred hhcccccchHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 101 AIIDKYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
++.+ +-.++...+. ...-|||+||+ .........+.+...++.--. .+..+|.+.+|+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDL----------SFe~gd~~yK~LKs~LeG~ve-~rP~NVl~YATSN 182 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDL----------SFEEGDDAYKALKSALEGGVE-GRPANVLFYATSN 182 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCC----------CCCCCchHHHHHHHHhcCCcc-cCCCeEEEEEecC
Confidence 6532 2244444444 33569999996 223345556677777763211 2334788888888
Q ss_pred CCCCCCh--------------------hccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC
Q 026258 180 RPDVLDP--------------------ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG 223 (241)
Q Consensus 180 ~~~~l~~--------------------~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~ 223 (241)
..+-+++ .+.-.+||+.-+.|.+++.++...|++.+.+.+..+.
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6543332 1222359999999999999999999999999887743
No 139
>PHA02244 ATPase-like protein
Probab=99.60 E-value=5.5e-14 Score=118.35 Aligned_cols=157 Identities=21% Similarity=0.192 Sum_probs=101.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccc--hHHHHHH-HHHHHHHhCCCeEEEEcCcccccCC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIG--ESARLIR-EMFGYARDHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~--~~~~~~~-~~f~~~~~~~~~vl~lDe~d~l~~~ 140 (241)
..+.+++|+||+|||||++++++|..++.+++.++.........+ .....+. .-+-.+. ...++|+|||++.+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a--- 192 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS--- 192 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcC---
Confidence 345689999999999999999999999999998874211000000 0000111 1122222 34579999999988
Q ss_pred CCCCCCCccHHHHHHHHHHHHHhc------CCCCCCCeEEEEEeCCC-----------CCCChhccCCCCcceEEEcCCC
Q 026258 141 RFSEGTSADREIQRTLMELLNQLD------GFDQLGKVKMIMATNRP-----------DVLDPALLRPGRLDRKIEIPLP 203 (241)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~ll~~~~------~~~~~~~~~vI~tt~~~-----------~~l~~~l~~~~r~~~~i~l~~p 203 (241)
.+..+..+..+++... .....+++++|+|+|.. ..+++++++ || ..+++++|
T Consensus 193 --------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 193 --------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred --------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 6777777777775321 11233589999999973 457889998 99 56899999
Q ss_pred CHHHHHHHHH-------------HhHcCccCCCCCCHHHHHHHhhh
Q 026258 204 NEQSRMEILK-------------IHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 204 ~~~~r~~il~-------------~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
+. ....|.. ..+.+..+...++.-.+.+.+.+
T Consensus 262 ~~-~E~~i~~~~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~~ 306 (383)
T PHA02244 262 EK-IEHLISNGDEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKKF 306 (383)
T ss_pred cH-HHHHHhhhHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Confidence 84 3333332 22334455556666666666655
No 140
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.60 E-value=2.1e-14 Score=120.91 Aligned_cols=164 Identities=21% Similarity=0.413 Sum_probs=106.7
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------Cc--eEEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-------AN--FLKV 97 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~-------~~--~~~v 97 (241)
.+.+|.+++|++++++.+.-++..+ ...|+||.|+||+|||++++++++.+. .+ +..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4678999999999999988665321 125899999999999999999998883 21 1111
Q ss_pred ech-hh---------------c--------ccccchHH--HHH---HHHH--HHHHhCCCeEEEEcCcccccCCCCCCCC
Q 026258 98 VSS-AI---------------I--------DKYIGESA--RLI---REMF--GYARDHQPCIIFMDEIDAIGGRRFSEGT 146 (241)
Q Consensus 98 ~~~-~~---------------~--------~~~~~~~~--~~~---~~~f--~~~~~~~~~vl~lDe~d~l~~~~~~~~~ 146 (241)
.+. .. . ....|... ..+ ...| +.......++||+||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 000 00 0 00111100 000 0001 1111233469999999999
Q ss_pred CccHHHHHHHHHHHHHhc------C--CCCCCCeEEEEEeCCCC-CCChhccCCCCcceEEEcCCCCH-HHHHHHHHHhH
Q 026258 147 SADREIQRTLMELLNQLD------G--FDQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLPNE-QSRMEILKIHA 216 (241)
Q Consensus 147 ~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI~tt~~~~-~l~~~l~~~~r~~~~i~l~~p~~-~~r~~il~~~~ 216 (241)
++..+..+.+.+++-. + ......+.+|+++|..+ .+++++.+ ||...+.+++|.. ++|.++++...
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 7888888888887532 1 01122566777777544 58889998 9999999988866 99999998754
No 141
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.60 E-value=4.9e-15 Score=122.58 Aligned_cols=177 Identities=27% Similarity=0.343 Sum_probs=114.7
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-eEEEechhhcc
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-FLKVVSSAIID 104 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-~~~v~~~~~~~ 104 (241)
-.|.+++|.+|+++.+.+ ...+...++. ..-.+++||||||||||||++.++.....+ +..|..+....
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 467788999998887765 3333222111 344679999999999999999999888655 33333333221
Q ss_pred cccchHHHHHHHHHHHHHh-----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe-
Q 026258 105 KYIGESARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT- 178 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~-----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt- 178 (241)
.....+.+|..++. .+..||||||++++ +...|..+.-.++. +.+.+|.+|
T Consensus 202 -----~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE~-------G~I~lIGATT 258 (554)
T KOG2028|consen 202 -----KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVEN-------GDITLIGATT 258 (554)
T ss_pred -----chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceecc-------CceEEEeccc
Confidence 22333455555443 45679999999999 55556665554432 468888765
Q ss_pred CCCC-CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHc---C-c----cCCC---CCCHHHHHHHhhhcc
Q 026258 179 NRPD-VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA---G-I----AKHG---EIDYEAVVKLAEVSR 238 (241)
Q Consensus 179 ~~~~-~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~---~-~----~~~~---~~~~~~l~~~~~~~~ 238 (241)
.+|. .++.++.+ || .++.+.....++...||.+-.. + . .+.. .++.+.|..++.++.
T Consensus 259 ENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028|consen 259 ENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred CCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence 4444 78999999 88 7788888888888888876332 1 1 1111 256666666666554
No 142
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.60 E-value=7.8e-14 Score=111.54 Aligned_cols=185 Identities=16% Similarity=0.215 Sum_probs=134.2
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---eEEEe
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVV 98 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---~~~v~ 98 (241)
|-.++.+.+++.+++.++....++..... ..-.|+++|||+|+||.|.+.++.+++... =..++
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 33458899999999999999999887742 223589999999999999999999988331 11111
Q ss_pred chhhcc----------------------cccchHHHHHHHHHHHHHh---------CCCeEEEEcCcccccCCCCCCCCC
Q 026258 99 SSAIID----------------------KYIGESARLIREMFGYARD---------HQPCIIFMDEIDAIGGRRFSEGTS 147 (241)
Q Consensus 99 ~~~~~~----------------------~~~~~~~~~~~~~f~~~~~---------~~~~vl~lDe~d~l~~~~~~~~~~ 147 (241)
...+.+ .........++.+...+-+ ....+++|-|+|.|
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L---------- 139 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL---------- 139 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----------
Confidence 111110 0001122233333333322 23559999999999
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCH
Q 026258 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY 227 (241)
Q Consensus 148 ~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~ 227 (241)
..+.|..+.+.++...+ ++++|+.+|+.+.+-+++++ |+ ..+.+|.|+.++...++...++...+ .++.
T Consensus 140 -T~dAQ~aLRRTMEkYs~-----~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l--~lp~ 208 (351)
T KOG2035|consen 140 -TRDAQHALRRTMEKYSS-----NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGL--QLPK 208 (351)
T ss_pred -hHHHHHHHHHHHHHHhc-----CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcc--cCcH
Confidence 78888999988887653 79999999999999999999 88 77899999999999999999988766 5566
Q ss_pred HHHHHHhhhccCC
Q 026258 228 EAVVKLAEVSRRG 240 (241)
Q Consensus 228 ~~l~~~~~~~~~~ 240 (241)
+.+..+++-+.+.
T Consensus 209 ~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 209 ELLKRIAEKSNRN 221 (351)
T ss_pred HHHHHHHHHhccc
Confidence 7777777665543
No 143
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.59 E-value=2e-14 Score=122.60 Aligned_cols=178 Identities=25% Similarity=0.398 Sum_probs=121.1
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhc-CCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-cccc-hH
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIG-ES 110 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~-~~ 110 (241)
++|++++++.+..++.+.+........+ +...+.+++|+||||||||++++++|+.++.+++.+++..+.. .+.+ ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 7899999999988887532221111111 1124578999999999999999999999999999999876542 3333 22
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 026258 111 ARLIREMFGYA--------------------------------------------------------------------- 121 (241)
Q Consensus 111 ~~~~~~~f~~~--------------------------------------------------------------------- 121 (241)
+..++.+|..+
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 22222222221
Q ss_pred ----------------------------------------------------------------------HhCCCeEEEE
Q 026258 122 ----------------------------------------------------------------------RDHQPCIIFM 131 (241)
Q Consensus 122 ----------------------------------------------------------------------~~~~~~vl~l 131 (241)
.....+|+||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0124579999
Q ss_pred cCcccccCCCCCC-CCCccHHHHHHHHHHHHHhcC-----CCCCCCeEEEEEeC----CCCCCChhccCCCCcceEEEcC
Q 026258 132 DEIDAIGGRRFSE-GTSADREIQRTLMELLNQLDG-----FDQLGKVKMIMATN----RPDVLDPALLRPGRLDRKIEIP 201 (241)
Q Consensus 132 De~d~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~-----~~~~~~~~vI~tt~----~~~~l~~~l~~~~r~~~~i~l~ 201 (241)
||+|.++.+..+. .+.+....|+.+..+++.-.- .-...++.+|++.. .|+++-|.+.. ||...+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 9999999765332 234445578888877764211 11223778887753 45677788887 999999999
Q ss_pred CCCHHHHHHHHH
Q 026258 202 LPNEQSRMEILK 213 (241)
Q Consensus 202 ~p~~~~r~~il~ 213 (241)
+++.+....||.
T Consensus 332 ~L~~edL~rILt 343 (441)
T TIGR00390 332 ALTTDDFERILT 343 (441)
T ss_pred CCCHHHHHHHhc
Confidence 999999998883
No 144
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=1.3e-13 Score=117.84 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=113.3
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE---------
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL--------- 95 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~--------- 95 (241)
.+.|.++++|+|++++++.+.+++.. + .-++.+||+||+|+||++++.++|+.+.+.--
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 47889999999999999999998864 1 44566999999999999999999988832110
Q ss_pred ------EEec---hhhc----------cc---ccc------hHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCC
Q 026258 96 ------KVVS---SAII----------DK---YIG------ESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFS 143 (241)
Q Consensus 96 ------~v~~---~~~~----------~~---~~~------~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~ 143 (241)
.-.| ..+. .. ..+ -....++.+...+ ....+.|++|||+|.+
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------ 153 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------ 153 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc------
Confidence 0000 0000 00 000 0012233332222 2245789999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 144 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
+...++.+...+++- .+++.+|++|++++.+.+.+++ |+ ..+.|++|+.++..+++....
T Consensus 154 -----~~~aanaLLK~LEep-----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 154 -----NANAANALLKVLEEP-----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -----CHHHHHHHHHHHhcC-----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 677777777777643 2367888899999989889988 88 779999999999999988654
No 145
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.58 E-value=2.2e-14 Score=121.13 Aligned_cols=168 Identities=20% Similarity=0.312 Sum_probs=111.3
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-------N 93 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~-------~ 93 (241)
+.....+..+|++++|+++.++.|...+..+ + ..+++|.|++|||||++++++++.+.. +
T Consensus 6 ~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p--------~-----~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~p 72 (350)
T CHL00081 6 LKKKERPVFPFTAIVGQEEMKLALILNVIDP--------K-----IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDP 72 (350)
T ss_pred hhhccCCCCCHHHHhChHHHHHHHHHhccCC--------C-----CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCC
Confidence 3344567789999999999999999998764 2 247999999999999999999876621 1
Q ss_pred eE---------------------------------EEechhhcccccchHHHHHHHHHHH---------HHhCCCeEEEE
Q 026258 94 FL---------------------------------KVVSSAIIDKYIGESARLIREMFGY---------ARDHQPCIIFM 131 (241)
Q Consensus 94 ~~---------------------------------~v~~~~~~~~~~~~~~~~~~~~f~~---------~~~~~~~vl~l 131 (241)
|. .+......+...|..+ +...+.. ......++||+
T Consensus 73 f~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD--~~~al~~g~~~~~~GlL~~A~~GiL~l 150 (350)
T CHL00081 73 FNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTID--IEKALTEGVKAFEPGLLAKANRGILYV 150 (350)
T ss_pred CCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCccc--HHHHhhcCcccccCCeeeecCCCEEEe
Confidence 11 0000000000111100 0111111 11244579999
Q ss_pred cCcccccCCCCCCCCCccHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-CCChhccCCCCcceEEEcCC
Q 026258 132 DEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------GF--DQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPL 202 (241)
Q Consensus 132 De~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vI~tt~~~~-~l~~~l~~~~r~~~~i~l~~ 202 (241)
||++.+ ++..|..+.+.+++-. +. ....++.+|++.|..+ .+++.+.+ ||...+.+..
T Consensus 151 DEInrL-----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~ 217 (350)
T CHL00081 151 DEVNLL-----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRT 217 (350)
T ss_pred cChHhC-----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCC
Confidence 999999 7888888888876521 11 1122556666556544 58899998 9999999999
Q ss_pred CC-HHHHHHHHHHhH
Q 026258 203 PN-EQSRMEILKIHA 216 (241)
Q Consensus 203 p~-~~~r~~il~~~~ 216 (241)
|+ .+.+.+|++...
T Consensus 218 ~~~~~~e~~il~~~~ 232 (350)
T CHL00081 218 VKDPELRVKIVEQRT 232 (350)
T ss_pred CCChHHHHHHHHhhh
Confidence 97 599999998754
No 146
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=1e-13 Score=119.44 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=125.2
Q ss_pred ccchHHHHHHHHHHhhcccCChHHH--Hh--cCC-CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-ccc
Q 026258 34 VGGLSDQIRELRESIELPLMNPELF--LR--VGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYI 107 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~--~~--~~~-~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-~~~ 107 (241)
++|++++++.+..++.+.+..-... .. -++ ....+++|+||||||||++++++|+.++.++..+++..+.. .+.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7899999999988774332221100 00 000 12368999999999999999999999999999998877542 344
Q ss_pred chH-HHHHHHHHHH----HHhCCCeEEEEcCcccccCCCCCCC---CCccHHHHHHHHHHHHHhc-C-------CCCCCC
Q 026258 108 GES-ARLIREMFGY----ARDHQPCIIFMDEIDAIGGRRFSEG---TSADREIQRTLMELLNQLD-G-------FDQLGK 171 (241)
Q Consensus 108 ~~~-~~~~~~~f~~----~~~~~~~vl~lDe~d~l~~~~~~~~---~~~~~~~~~~l~~ll~~~~-~-------~~~~~~ 171 (241)
+.. ...+...+.. .....+++|||||+|.+..+..++. ..+....|..+.++++..- . .....+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 442 3333333322 2335678999999999976432221 1222367888888885321 0 011224
Q ss_pred eEEEEEeCCC---------------------------C-----------------------CCChhccCCCCcceEEEcC
Q 026258 172 VKMIMATNRP---------------------------D-----------------------VLDPALLRPGRLDRKIEIP 201 (241)
Q Consensus 172 ~~vI~tt~~~---------------------------~-----------------------~l~~~l~~~~r~~~~i~l~ 201 (241)
..+|.|+|-. + .+.|.+.. |++.++.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecC
Confidence 5666666540 0 02234444 888889999
Q ss_pred CCCHHHHHHHHHH----hHcCc-------cCCCCCCHHHHHHHhhh
Q 026258 202 LPNEQSRMEILKI----HAAGI-------AKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 202 ~p~~~~r~~il~~----~~~~~-------~~~~~~~~~~l~~~~~~ 236 (241)
+++.+...+|+.. +++++ ...-.++.+++..+++.
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~ 362 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKK 362 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHh
Confidence 9999999999874 23221 22224567778777765
No 147
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=2.4e-14 Score=124.20 Aligned_cols=185 Identities=26% Similarity=0.376 Sum_probs=133.1
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechh
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~ 101 (241)
.....+|++++|.+....++.+.+... .....+|||.|.+||||..+|+++.+.. +.+|+.++|..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 466789999999999999999888532 2556789999999999999999999877 78999999999
Q ss_pred hcccccchHHHHHHHHHHHHHh----------------CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC
Q 026258 102 IIDKYIGESARLIREMFGYARD----------------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~----------------~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 165 (241)
+......+ .+|++.+. ...+-|||||+..+ ....|..+.+++++-+-
T Consensus 307 iPe~LlES------ELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-----------pl~LQaKLLRVLQEkei 369 (560)
T COG3829 307 IPETLLES------ELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-----------PLPLQAKLLRVLQEKEI 369 (560)
T ss_pred CCHHHHHH------HHhCcCCccccccccCCCCcceeeccCCeEEehhhccC-----------CHHHHHHHHHHHhhceE
Confidence 86543332 44544322 33468999999998 88899999999987431
Q ss_pred C------CCCCCeEEEEEeCCC--CC-----CChhccCCCCcceEEEcCCCCHHHHHH--------HHHHhHcCccCC-C
Q 026258 166 F------DQLGKVKMIMATNRP--DV-----LDPALLRPGRLDRKIEIPLPNEQSRME--------ILKIHAAGIAKH-G 223 (241)
Q Consensus 166 ~------~~~~~~~vI~tt~~~--~~-----l~~~l~~~~r~~~~i~l~~p~~~~r~~--------il~~~~~~~~~~-~ 223 (241)
. ...-.+++|++||.. +. +.+.|.- |+ .++.+..|...+|.+ +++.+-+..... .
T Consensus 370 ~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~ 446 (560)
T COG3829 370 ERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVK 446 (560)
T ss_pred EecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--ee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcc
Confidence 1 111279999999864 22 2233333 44 356666666666653 333333333333 4
Q ss_pred CCCHHHHHHHhhhccCC
Q 026258 224 EIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 224 ~~~~~~l~~~~~~~~~~ 240 (241)
.++.++++.+.++.|+|
T Consensus 447 ~ls~~a~~~L~~y~WPG 463 (560)
T COG3829 447 GLSPDALALLLRYDWPG 463 (560)
T ss_pred cCCHHHHHHHHhCCCCc
Confidence 68999999999999987
No 148
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.57 E-value=1.6e-13 Score=122.10 Aligned_cols=202 Identities=21% Similarity=0.251 Sum_probs=140.2
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHH----hc-------------------CCCCCceEEEEcCCCC
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFL----RV-------------------GIKPPKGVLLYGPPGT 77 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~----~~-------------------~~~~~~~vll~G~~Gs 77 (241)
+|=.++.+.+|.||.|-+.+=+.+..++..| ++..|. ++ +-.+..-+||+||||.
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 3334589999999999999999999998765 344432 11 1112345999999999
Q ss_pred hHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHH-H-H--hCCCeEEEEcCcccccCCCCCCCCCccHHHH
Q 026258 78 GKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGY-A-R--DHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (241)
Q Consensus 78 GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~-~-~--~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~ 153 (241)
||||||+.+|++.|..+++++.++-.+. ......+..+... . . ..+|..|++||||.- .....
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~~~V 404 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PRAAV 404 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cHHHH
Confidence 9999999999999999999998876432 1222222222211 1 1 156889999999776 45555
Q ss_pred HHHHHHHHHhc--CCCCCC--------------CeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHc
Q 026258 154 RTLMELLNQLD--GFDQLG--------------KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (241)
Q Consensus 154 ~~l~~ll~~~~--~~~~~~--------------~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~ 217 (241)
..+..++..-. .....+ ..-||++||+... |+|+.---|.+.+.|.+|......+-|+..+.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 66666665211 000000 2458999998764 34443225778999999999888888887787
Q ss_pred CccCCCCCCHHHHHHHhhhccCCC
Q 026258 218 GIAKHGEIDYEAVVKLAEVSRRGL 241 (241)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~~~~~ 241 (241)
.... .+|...|..+++++.++|
T Consensus 483 rE~m--r~d~~aL~~L~el~~~DI 504 (877)
T KOG1969|consen 483 RENM--RADSKALNALCELTQNDI 504 (877)
T ss_pred hhcC--CCCHHHHHHHHHHhcchH
Confidence 7766 678999999999998875
No 149
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.57 E-value=2.1e-13 Score=106.65 Aligned_cols=143 Identities=20% Similarity=0.349 Sum_probs=96.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------eEEEechhhcccccchHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------FLKVVSSAIIDKYIGESARLIREMFGY 120 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~~~~~f~~ 120 (241)
.++.+||+||+|+|||++++.+++.+... +..+.... ... ....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~--~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI--KVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC--CHHHHHHHHHH
Confidence 34679999999999999999999987432 12221111 001 11223333333
Q ss_pred HH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcce
Q 026258 121 AR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDR 196 (241)
Q Consensus 121 ~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~ 196 (241)
+. .....|++|||+|.+ ....+..+...+++ ..++..+|++|+++..+.+++++ |+ .
T Consensus 88 ~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-E
Confidence 32 244679999999999 45455555555543 23467888888888889999998 88 6
Q ss_pred EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 197 KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 197 ~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
.+.+++|+.++...+++.. .++.+++..+++.+..
T Consensus 149 ~~~~~~~~~~~~~~~l~~~--------gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ--------GISEEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc--------CCCHHHHHHHHHHcCC
Confidence 8999999999999998876 2456666666665543
No 150
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.57 E-value=6.7e-14 Score=119.51 Aligned_cols=185 Identities=23% Similarity=0.349 Sum_probs=123.5
Q ss_pred CCCCCcccccc-ch--HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEE
Q 026258 25 DPGNVSYSAVG-GL--SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLK 96 (241)
Q Consensus 25 ~~~~~~~~~l~-g~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~ 96 (241)
..+..+|++.+ |- .-+......+...+ | ...+.++|||+.|+|||+|++++++.. +..+++
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y 148 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------G-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY 148 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc----------C-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe
Confidence 45677888854 32 22333333333221 2 245789999999999999999999888 335777
Q ss_pred EechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 026258 97 VVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (241)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 176 (241)
+....+...........-..-|..-+ .-++++|||++.+.++ ...+..+..+++.+... ++ .+|+
T Consensus 149 ~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk---------~~~qeefFh~FN~l~~~---~k-qIvl 213 (408)
T COG0593 149 LTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK---------ERTQEEFFHTFNALLEN---GK-QIVL 213 (408)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC---------hhHHHHHHHHHHHHHhc---CC-EEEE
Confidence 77777665544443333334455545 4579999999999653 34466666666665432 23 5666
Q ss_pred EeC-CCCC---CChhccCCCCcce--EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 177 ATN-RPDV---LDPALLRPGRLDR--KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 177 tt~-~~~~---l~~~l~~~~r~~~--~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
|+. .|.+ +.+.+++ ||.+ .+.+.+|+.+.|..|++........ .++.+++..++....+
T Consensus 214 tsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~--~i~~ev~~~la~~~~~ 278 (408)
T COG0593 214 TSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGI--EIPDEVLEFLAKRLDR 278 (408)
T ss_pred EcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhhc
Confidence 664 4544 5578888 7755 7789999999999999997766655 6677777766665544
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-14 Score=130.99 Aligned_cols=181 Identities=25% Similarity=0.375 Sum_probs=129.6
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCC----CceEEEEcCCCChHHHHHHHHHHHhC---CceEEEechhhccc
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKP----PKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSAIIDK 105 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~vll~G~~GsGKTtl~~~la~~l~---~~~~~v~~~~~~~~ 105 (241)
.|+|++++++.+.+++... +.|+.. ..+++|.||+|+|||-|++++|..+. ..++++|++++...
T Consensus 492 rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5899999999999999754 556543 35699999999999999999999995 78999999988653
Q ss_pred ------------ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCC---
Q 026258 106 ------------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--- 170 (241)
Q Consensus 106 ------------~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~--- 170 (241)
|+|..+. ..+-..++.+.++||++||++.. ++...+.++++++.-.-....+
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEE
Confidence 2222221 12223455667889999999988 8999999999998643222222
Q ss_pred ---CeEEEEEeCCCC----------------------------CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc
Q 026258 171 ---KVKMIMATNRPD----------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 171 ---~~~vI~tt~~~~----------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~ 219 (241)
++.+|+|||--. ...|.++. |++.+|.|.+.+.+...+|+...+.+.
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 677888887321 13345556 899899999999999999988766542
Q ss_pred c-------CCCCCCHHHHHHHhhh
Q 026258 220 A-------KHGEIDYEAVVKLAEV 236 (241)
Q Consensus 220 ~-------~~~~~~~~~l~~~~~~ 236 (241)
. ..-.++.+....+++.
T Consensus 709 ~~~L~~~~i~l~~s~~a~~~l~~~ 732 (786)
T COG0542 709 AKRLAERGITLELSDEAKDFLAEK 732 (786)
T ss_pred HHHHHhCCceEEECHHHHHHHHHh
Confidence 1 1223455566555543
No 152
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.56 E-value=4.5e-14 Score=120.61 Aligned_cols=202 Identities=27% Similarity=0.399 Sum_probs=130.9
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-cccc-hH
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIG-ES 110 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~-~~ 110 (241)
++|++++++.+..++...+....+...+. -..+.+++|+||||||||++++.+++.++.+|+.+++..+.. .|.+ ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 89999999999988864221111100000 012478999999999999999999999999999999876653 3444 22
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 026258 111 ARLIREMFGYA--------------------------------------------------------------------- 121 (241)
Q Consensus 111 ~~~~~~~f~~~--------------------------------------------------------------------- 121 (241)
+..++.+|..+
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 22222222222
Q ss_pred ---------------------------------------------------------------------HhCCCeEEEEc
Q 026258 122 ---------------------------------------------------------------------RDHQPCIIFMD 132 (241)
Q Consensus 122 ---------------------------------------------------------------------~~~~~~vl~lD 132 (241)
.....+|+|||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 01245799999
Q ss_pred CcccccCCCCCC-CCCccHHHHHHHHHHHHHhcC-----CCCCCCeEEEEEe----CCCCCCChhccCCCCcceEEEcCC
Q 026258 133 EIDAIGGRRFSE-GTSADREIQRTLMELLNQLDG-----FDQLGKVKMIMAT----NRPDVLDPALLRPGRLDRKIEIPL 202 (241)
Q Consensus 133 e~d~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~-----~~~~~~~~vI~tt----~~~~~l~~~l~~~~r~~~~i~l~~ 202 (241)
|+|.++....+. .+.+....|+.+..+++.-.- .-...++.+|++. ..|+++-|.+.. ||...+.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCC
Confidence 999999765332 233445578888777764211 1122377788765 335667788887 9999999999
Q ss_pred CCHHHHHHHHH----HhHcCc---cCCC----CCCHHHHHHHhhhc
Q 026258 203 PNEQSRMEILK----IHAAGI---AKHG----EIDYEAVVKLAEVS 237 (241)
Q Consensus 203 p~~~~r~~il~----~~~~~~---~~~~----~~~~~~l~~~~~~~ 237 (241)
++.+....||. ++++++ .... .+..++|..+++.+
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 99999998883 344332 1112 23456666666554
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=1.7e-13 Score=128.89 Aligned_cols=182 Identities=23% Similarity=0.337 Sum_probs=125.7
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCC----CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKP----PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
..++|++.+++.+...+... +.|+.. ...++|+||+|||||++++++++.+ +.+++.++++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 45889999999999998643 223322 2469999999999999999999887 45788999887643
Q ss_pred ccc------------chHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC----
Q 026258 105 KYI------------GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ---- 168 (241)
Q Consensus 105 ~~~------------~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---- 168 (241)
... +.... ..+...++....++|+|||++.+ ++..+..+..+++.-.-...
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceE
Confidence 211 10000 11222233445689999999988 78888899888875321111
Q ss_pred --CCCeEEEEEeCCCC-------------------------CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc--
Q 026258 169 --LGKVKMIMATNRPD-------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-- 219 (241)
Q Consensus 169 --~~~~~vI~tt~~~~-------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~-- 219 (241)
..++.+|+|||... .+.+.+.+ |++..+.|.+++.+...+|++..+...
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYK 784 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 12456888888621 24456777 898899999999999999988766552
Q ss_pred -----cCCCCCCHHHHHHHhhh
Q 026258 220 -----AKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 220 -----~~~~~~~~~~l~~~~~~ 236 (241)
...-.++.+++..+++.
T Consensus 785 rl~~~gi~l~is~~al~~L~~~ 806 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSEN 806 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHc
Confidence 22335788888888764
No 154
>PRK09087 hypothetical protein; Validated
Probab=99.55 E-value=8.9e-14 Score=111.61 Aligned_cols=165 Identities=22% Similarity=0.208 Sum_probs=104.3
Q ss_pred CCCCccccccc---hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhh
Q 026258 26 PGNVSYSAVGG---LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (241)
Q Consensus 26 ~~~~~~~~l~g---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~ 102 (241)
++..+|++.+. +..++..+.+... ..++.++|+||+|||||+|++++++..+..+ ++...+
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~~l~~~~~--------------~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~ 78 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVSLVDHWPN--------------WPSPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEI 78 (226)
T ss_pred CCCCChhceeecCchHHHHHHHHhccc--------------CCCCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHc
Confidence 45568999663 3444443333211 2234599999999999999999998765443 332222
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-C
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR-P 181 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~-~ 181 (241)
.. ..+.... .++|+|||++.+.. .+..+..+++.+... +..+|++++. +
T Consensus 79 ~~-----------~~~~~~~---~~~l~iDDi~~~~~------------~~~~lf~l~n~~~~~----g~~ilits~~~p 128 (226)
T PRK09087 79 GS-----------DAANAAA---EGPVLIEDIDAGGF------------DETGLFHLINSVRQA----GTSLLMTSRLWP 128 (226)
T ss_pred ch-----------HHHHhhh---cCeEEEECCCCCCC------------CHHHHHHHHHHHHhC----CCeEEEECCCCh
Confidence 11 1111111 15899999987621 124456666554321 3445555543 3
Q ss_pred C--C-CChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCC
Q 026258 182 D--V-LDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 182 ~--~-l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
. . ..+.+++ |+. ..+++.+|+.+.|.++++.+++.... .++.+++..+++.+.+.
T Consensus 129 ~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~--~l~~ev~~~La~~~~r~ 188 (226)
T PRK09087 129 SSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL--YVDPHVVYYLVSRMERS 188 (226)
T ss_pred HHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhhh
Confidence 3 2 3577888 764 58899999999999999999987544 67888888888776553
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.54 E-value=1.9e-13 Score=128.25 Aligned_cols=182 Identities=20% Similarity=0.311 Sum_probs=126.5
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCC---CC-ceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIK---PP-KGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~-~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
..|+|++++++.+.+.+... +.|+. .+ ..++|+||+|+|||.+++++|..+ ...++.++++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35889999999999998654 23332 22 358999999999999999999988 45788999877643
Q ss_pred c------------ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC---
Q 026258 105 K------------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL--- 169 (241)
Q Consensus 105 ~------------~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--- 169 (241)
. +.|..+. ..+...++.+.++||+|||++.. ++.....+.++++.-.-....
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcE
Confidence 2 1221111 11233445577899999999987 788888888888754211111
Q ss_pred ---CCeEEEEEeCCCC-----------------------------CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHc
Q 026258 170 ---GKVKMIMATNRPD-----------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (241)
Q Consensus 170 ---~~~~vI~tt~~~~-----------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~ 217 (241)
.++.+|+|||-.. .+.+.+++ |+. .+.|.+++.++...|++..+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 3688889887421 14455666 885 889999999999999987665
Q ss_pred Cc--------cCCCCCCHHHHHHHhhhc
Q 026258 218 GI--------AKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 218 ~~--------~~~~~~~~~~l~~~~~~~ 237 (241)
+. ...-.++.+++..+++.+
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g 809 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARC 809 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHc
Confidence 42 222256778888777754
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=2.8e-13 Score=113.71 Aligned_cols=174 Identities=18% Similarity=0.288 Sum_probs=116.5
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---------------- 93 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---------------- 93 (241)
.|++++|++++++.+.+.+.. + .-++.+||+||+|+||+++++++|+.+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 588999999999999999863 1 345789999999999999999999887322
Q ss_pred --eEEEechhhc-ccc--------cc--------hHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccH
Q 026258 94 --FLKVVSSAII-DKY--------IG--------ESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADR 150 (241)
Q Consensus 94 --~~~v~~~~~~-~~~--------~~--------~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~ 150 (241)
+..+...... +.. .+ -....++.+...+. .....|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1222111000 000 00 00112233322222 245679999999999 66
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 151 EIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 151 ~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
..++.+...+++- + +..+|++|++++.+.+.++| |+ ..+.|++++.++..++++........ +.+...+
T Consensus 139 ~aaNaLLK~LEEP----p--~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEEP----G--NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred HHHHHHHHHHhCC----C--CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 6667777777642 2 45788889999999999999 88 77999999999999998865432111 1123556
Q ss_pred HHHhhhc
Q 026258 231 VKLAEVS 237 (241)
Q Consensus 231 ~~~~~~~ 237 (241)
...++++
T Consensus 208 ~~~a~Gs 214 (314)
T PRK07399 208 LALAQGS 214 (314)
T ss_pred HHHcCCC
Confidence 5555554
No 157
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.53 E-value=2.5e-13 Score=114.86 Aligned_cols=149 Identities=23% Similarity=0.406 Sum_probs=105.0
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------------------
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID--------------------- 91 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~--------------------- 91 (241)
++++.++...++..+.... + .-++.+||+||||+|||+++.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5788888888988888632 1 2223499999999999999999999986
Q ss_pred ---CceEEEechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 92 ---ANFLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 92 ---~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
..++.++.++..... .....++.+-..... ....|++|||+|.+ ....+..+...+++-
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEep- 136 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEEP- 136 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhccC-
Confidence 456677666554321 122223333222222 34579999999999 666777777777643
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHH
Q 026258 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK 213 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~ 213 (241)
..+..+|++||.+..+-+.+++ |+ ..+.|++|+........+
T Consensus 137 ----~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 ----PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ----CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 3478999999999999999999 88 668887766555544443
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=6.4e-13 Score=125.28 Aligned_cols=185 Identities=21% Similarity=0.321 Sum_probs=128.0
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCC----CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIK----PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
..|+|++.+++.+.+.+... +.|+. +...++|.||+|||||+++++++..+ +.+++.++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45899999999999998753 22322 34569999999999999999999987 46889999887643
Q ss_pred cccchH-----H-----HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC------
Q 026258 105 KYIGES-----A-----RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ------ 168 (241)
Q Consensus 105 ~~~~~~-----~-----~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------ 168 (241)
...... . .....+...+..+..+||+|||++.+ ++..+..+.+++++-.-...
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEe
Confidence 221000 0 00012223344556679999999988 88899999999875421111
Q ss_pred CCCeEEEEEeCCCCC-------------------------CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC-----
Q 026258 169 LGKVKMIMATNRPDV-------------------------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG----- 218 (241)
Q Consensus 169 ~~~~~vI~tt~~~~~-------------------------l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~----- 218 (241)
..++.+|+|||.... +.+.+.. |++.++.|.+++.+....|+...+..
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l 783 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRL 783 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHH
Confidence 125678898886211 3345555 88889999999999999988865542
Q ss_pred --ccCCCCCCHHHHHHHhhhc
Q 026258 219 --IAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 219 --~~~~~~~~~~~l~~~~~~~ 237 (241)
....-.++.+++..+++..
T Consensus 784 ~~~~~~l~i~~~a~~~L~~~~ 804 (852)
T TIGR03346 784 AERKITLELSDAALDFLAEAG 804 (852)
T ss_pred HHCCCeecCCHHHHHHHHHhC
Confidence 1122367888888888764
No 159
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.52 E-value=1.4e-13 Score=119.14 Aligned_cols=182 Identities=30% Similarity=0.401 Sum_probs=132.0
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
...+..++|....++++.+.+.. .. ....+|+|.|++||||..+|++|.+.. +.+|+.++|..+..
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~k----------vA-~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~ 205 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAK----------VA-PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE 205 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence 34677899999999999998863 22 445689999999999999999999877 56999999998864
Q ss_pred cccchHHHHHHHHHHHHH---------------hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC--CC
Q 026258 105 KYIGESARLIREMFGYAR---------------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--FD 167 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~---------------~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~ 167 (241)
....+ .+|++.+ ....+.|||||+..+ ....|..+.+++++-.- ..
T Consensus 206 ~l~ES------ELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG 268 (464)
T COG2204 206 NLLES------ELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVG 268 (464)
T ss_pred HHHHH------HhhcccccCcCCcccccCcceeEcCCceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecC
Confidence 33222 5666544 245679999999999 88899999999986431 11
Q ss_pred ----CCCCeEEEEEeCCC--C-----CCChhccCCCCcceEEEcCCCCHHHHHH--------HHHHhHcCcc-CCCCCCH
Q 026258 168 ----QLGKVKMIMATNRP--D-----VLDPALLRPGRLDRKIEIPLPNEQSRME--------ILKIHAAGIA-KHGEIDY 227 (241)
Q Consensus 168 ----~~~~~~vI~tt~~~--~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~--------il~~~~~~~~-~~~~~~~ 227 (241)
..-.++||++||.. + .+-+.|.. |+ .++.+..|...+|.+ +++...+... ....++.
T Consensus 269 ~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~ 345 (464)
T COG2204 269 GNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSP 345 (464)
T ss_pred CCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 11279999999864 1 23334444 55 467777777776663 3344444432 2357899
Q ss_pred HHHHHHhhhccCC
Q 026258 228 EAVVKLAEVSRRG 240 (241)
Q Consensus 228 ~~l~~~~~~~~~~ 240 (241)
+.++.+..+.|+|
T Consensus 346 ~a~~~L~~y~WPG 358 (464)
T COG2204 346 EALAALLAYDWPG 358 (464)
T ss_pred HHHHHHHhCCCCh
Confidence 9999999999986
No 160
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=116.79 Aligned_cols=153 Identities=29% Similarity=0.351 Sum_probs=106.7
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccc--cchHH
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY--IGESA 111 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~--~~~~~ 111 (241)
++|.++++..+..++. .+.+++|.|+||+|||++++.+|..++.+++.+.|....... .|...
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 6777888877766663 357899999999999999999999999999999998665421 12111
Q ss_pred HHHH----HHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc------C-CCCCCCeEEEE
Q 026258 112 RLIR----EMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------G-FDQLGKVKMIM 176 (241)
Q Consensus 112 ~~~~----~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~-~~~~~~~~vI~ 176 (241)
.... ..+... ......++++||++.. ++..+..+...+++.. . ......+.+|+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 1110 001000 0111149999999998 8889999999998742 1 22334677777
Q ss_pred EeC-----CCCCCChhccCCCCcceEEEcCCC-CHHHHHHHHHH
Q 026258 177 ATN-----RPDVLDPALLRPGRLDRKIEIPLP-NEQSRMEILKI 214 (241)
Q Consensus 177 tt~-----~~~~l~~~l~~~~r~~~~i~l~~p-~~~~r~~il~~ 214 (241)
|.| ....+++++.+ ||...+.+++| +.++...++..
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHh
Confidence 778 33568999999 99888999999 44445544443
No 161
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.51 E-value=2.1e-13 Score=115.42 Aligned_cols=181 Identities=21% Similarity=0.250 Sum_probs=121.8
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY 106 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~ 106 (241)
-+++++|.+...+++.+.+... . ..+.+|+|.|++||||+++|+++.... +.+|+.++|..+....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~----------a-~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL----------A-PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH----------h-CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 3567899999999999888642 1 446789999999999999999998766 4689999999863211
Q ss_pred cchHHHHHHHHHHH---------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-----
Q 026258 107 IGESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF----- 166 (241)
Q Consensus 107 ~~~~~~~~~~~f~~---------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----- 166 (241)
.. ..+|+. ......+.|||||++.+ +...|..+..+++.-...
T Consensus 73 ---~~---~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 73 ---LD---SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGS 135 (326)
T ss_pred ---HH---HHHccccccccCCcccccCCchhccCCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 11 122221 22344679999999999 788888888888653211
Q ss_pred -CCCCCeEEEEEeCCC-------CCCChhccCCCCcc-eEEEcCCCCH--HHHHHHHHHhHcCc----cCC--CCCCHHH
Q 026258 167 -DQLGKVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPNE--QSRMEILKIHAAGI----AKH--GEIDYEA 229 (241)
Q Consensus 167 -~~~~~~~vI~tt~~~-------~~l~~~l~~~~r~~-~~i~l~~p~~--~~r~~il~~~~~~~----~~~--~~~~~~~ 229 (241)
....++++|++|+.. ..+.+.+.. ||. ..|.+|+... +....+++.++... ... ..++.+.
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 111258899988653 235556665 663 3555655533 33445555554332 222 3578999
Q ss_pred HHHHhhhccCC
Q 026258 230 VVKLAEVSRRG 240 (241)
Q Consensus 230 l~~~~~~~~~~ 240 (241)
+..+..+.|+|
T Consensus 214 l~~L~~y~WPG 224 (326)
T PRK11608 214 RETLLNYRWPG 224 (326)
T ss_pred HHHHHhCCCCc
Confidence 99999998876
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=5.6e-13 Score=125.33 Aligned_cols=182 Identities=24% Similarity=0.361 Sum_probs=125.7
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCC----CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIK----PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
..|+|++++++.+.+++... +.|+. +...++|+||+|+|||++++++|+.+ ...++.++++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 45889999999999988643 33332 22458999999999999999999987 35788888877643
Q ss_pred cc------------cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-----
Q 026258 105 KY------------IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD----- 167 (241)
Q Consensus 105 ~~------------~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~----- 167 (241)
.. .+..+ ...+...++.+..+|+++||+|.+ ++..++.+.+++++-.-..
T Consensus 581 ~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred cccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcE
Confidence 21 11111 112344455566789999999998 7888888888887532101
Q ss_pred -CCCCeEEEEEeCCCCC-------------------------------------CChhccCCCCcceEEEcCCCCHHHHH
Q 026258 168 -QLGKVKMIMATNRPDV-------------------------------------LDPALLRPGRLDRKIEIPLPNEQSRM 209 (241)
Q Consensus 168 -~~~~~~vI~tt~~~~~-------------------------------------l~~~l~~~~r~~~~i~l~~p~~~~r~ 209 (241)
...++.+|+|||.... +.|.+.+ |++.++.|.+++.++..
T Consensus 648 v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~ 725 (821)
T CHL00095 648 IDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVW 725 (821)
T ss_pred EecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHH
Confidence 1237888898874311 1234556 88889999999999999
Q ss_pred HHHHHhHcCc-------cCCCCCCHHHHHHHhhh
Q 026258 210 EILKIHAAGI-------AKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 210 ~il~~~~~~~-------~~~~~~~~~~l~~~~~~ 236 (241)
+|++..+.+. ...-.++.+++..+++.
T Consensus 726 ~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 726 EIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHh
Confidence 9988766542 11224566777777664
No 163
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.49 E-value=5.1e-13 Score=113.02 Aligned_cols=177 Identities=22% Similarity=0.266 Sum_probs=115.5
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchH
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES 110 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~ 110 (241)
++|.+...+++.+.+... . ....+|+|.|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~----------a-~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l--- 66 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL----------A-PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLL--- 66 (329)
T ss_pred CCcCCHHHHHHHHHHHHH----------h-CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHH---
Confidence 467777777777777532 1 445789999999999999999998766 46899999987642111
Q ss_pred HHHHHHHHHH---------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC------CCCC
Q 026258 111 ARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------FDQL 169 (241)
Q Consensus 111 ~~~~~~~f~~---------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------~~~~ 169 (241)
-..+|+. ......++|||||++.+ +...|..+..+++.-.. ....
T Consensus 67 ---~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 132 (329)
T TIGR02974 67 ---DSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQ 132 (329)
T ss_pred ---HHHHhccccccccCcccccCCchhhCCCCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceec
Confidence 1123322 12334689999999999 88889999988875321 0112
Q ss_pred CCeEEEEEeCCC-------CCCChhccCCCCcce-EEEcCCCC--HHHHHHHHHHhHcCc----cCC--CCCCHHHHHHH
Q 026258 170 GKVKMIMATNRP-------DVLDPALLRPGRLDR-KIEIPLPN--EQSRMEILKIHAAGI----AKH--GEIDYEAVVKL 233 (241)
Q Consensus 170 ~~~~vI~tt~~~-------~~l~~~l~~~~r~~~-~i~l~~p~--~~~r~~il~~~~~~~----~~~--~~~~~~~l~~~ 233 (241)
.++++|++|+.. ..+.+.+.. |+.. .|.+|+.. .+....+++.++... ... ..++.+++..+
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 368999998753 134455555 6632 44454443 233444555544332 222 36789999999
Q ss_pred hhhccCC
Q 026258 234 AEVSRRG 240 (241)
Q Consensus 234 ~~~~~~~ 240 (241)
..+.|+|
T Consensus 211 ~~y~WPG 217 (329)
T TIGR02974 211 LEYHWPG 217 (329)
T ss_pred HhCCCCc
Confidence 9998876
No 164
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=7.8e-13 Score=112.06 Aligned_cols=149 Identities=18% Similarity=0.241 Sum_probs=104.6
Q ss_pred ccccccc-hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 026258 30 SYSAVGG-LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--------------- 93 (241)
Q Consensus 30 ~~~~l~g-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--------------- 93 (241)
.|+.|+| ++.+++.+...+.. + .-++.+||+||+|+||+++++.+++.+...
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------N-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 5788888 88899999888853 1 345668999999999999999999887332
Q ss_pred ---------eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHH
Q 026258 94 ---------FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (241)
Q Consensus 94 ---------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll 160 (241)
+..+... +... ....++.+.... ......|++|||+|.+ +...++.+...+
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 1111110 0000 112233333222 2234579999999999 666666666666
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHH
Q 026258 161 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 161 ~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~ 214 (241)
++ +.+++.+|++|++++.+.+.++| |+ ..+.+++|+.++..+.++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 64 33478899999999999999999 88 7799999999888777753
No 165
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.48 E-value=3.6e-13 Score=113.68 Aligned_cols=161 Identities=22% Similarity=0.362 Sum_probs=104.5
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CceE-------
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-------ANFL------- 95 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~-------~~~~------- 95 (241)
.|..++|+++.+..|.-.+..+ ...+++|.|++|+||||+++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 6889999999999997777543 235899999999999999999997762 1111
Q ss_pred --EEechhh----------------cc--------cccchHH--HHHH---HHH--HHHHhCCCeEEEEcCcccccCCCC
Q 026258 96 --KVVSSAI----------------ID--------KYIGESA--RLIR---EMF--GYARDHQPCIIFMDEIDAIGGRRF 142 (241)
Q Consensus 96 --~v~~~~~----------------~~--------~~~~~~~--~~~~---~~f--~~~~~~~~~vl~lDe~d~l~~~~~ 142 (241)
..+|... .. ...|... ..+. ..| +.......++||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L----- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL----- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-----
Confidence 0001100 00 1111110 0000 000 1112244579999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHhc------C--CCCCCCeEEEEEeCCCC-CCChhccCCCCcceEEEcCCCCH-HHHHHHH
Q 026258 143 SEGTSADREIQRTLMELLNQLD------G--FDQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLPNE-QSRMEIL 212 (241)
Q Consensus 143 ~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI~tt~~~~-~l~~~l~~~~r~~~~i~l~~p~~-~~r~~il 212 (241)
++..|..+.+.+++-. + .....++.+|+++|..+ .+++.+.+ ||...+.+++|+. ++|.+|+
T Consensus 144 ------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 144 ------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred ------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 7888888888886521 0 01112456666666444 68899999 9999999998876 8899999
Q ss_pred HHhH
Q 026258 213 KIHA 216 (241)
Q Consensus 213 ~~~~ 216 (241)
+...
T Consensus 216 ~~~~ 219 (337)
T TIGR02030 216 ERRT 219 (337)
T ss_pred Hhhh
Confidence 8743
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=1e-12 Score=118.73 Aligned_cols=198 Identities=14% Similarity=0.181 Sum_probs=119.2
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE-Ee
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK-VV 98 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~-v~ 98 (241)
..|.....|.++++++|.++.++.+..++... .++..++..++|+||+||||||+++.+|+.++..+.+ .+
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n 143 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN 143 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh
Confidence 34556789999999999999999999998653 2333445569999999999999999999988765433 11
Q ss_pred ---chhhccc------------ccchHHHHHHHHHHHHH----------hCCCeEEEEcCcccccCCCCCCCCCccHHHH
Q 026258 99 ---SSAIIDK------------YIGESARLIREMFGYAR----------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (241)
Q Consensus 99 ---~~~~~~~------------~~~~~~~~~~~~f~~~~----------~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~ 153 (241)
+....+. ...+....+..++..+. .....||+|||++.++... ..
T Consensus 144 pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-------~~--- 213 (637)
T TIGR00602 144 PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-------TR--- 213 (637)
T ss_pred hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh-------HH---
Confidence 1100000 01122233333333332 1345699999998875321 12
Q ss_pred HHHHHHHH-HhcCCCCCCCeEEEEEeCC-CC--------C------CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHc
Q 026258 154 RTLMELLN-QLDGFDQLGKVKMIMATNR-PD--------V------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAA 217 (241)
Q Consensus 154 ~~l~~ll~-~~~~~~~~~~~~vI~tt~~-~~--------~------l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~ 217 (241)
.+..++. ... ..+.+.+|++++. +. . +.+.+++..|+ ..|.|++.+.......|+..+.
T Consensus 214 -~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 214 -ALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred -HHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHH
Confidence 2333333 111 1235667766653 21 0 23556543345 4789999999998888887776
Q ss_pred CccCC--C--CC-CHHHHHHHhhhccCC
Q 026258 218 GIAKH--G--EI-DYEAVVKLAEVSRRG 240 (241)
Q Consensus 218 ~~~~~--~--~~-~~~~l~~~~~~~~~~ 240 (241)
..... . .+ +.+.+..++..+..+
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHhCCCh
Confidence 53211 1 12 456777766655544
No 167
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.47 E-value=4e-13 Score=121.04 Aligned_cols=184 Identities=23% Similarity=0.279 Sum_probs=125.3
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhc
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII 103 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~ 103 (241)
+..+++.++|.+...+++.+.+... .....+|+|+|++||||+++++++.... +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3468899999999999999988642 1445689999999999999999999876 5699999998773
Q ss_pred ccccchHHHHHHHHHHHH---------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-
Q 026258 104 DKYIGESARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD- 167 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~---------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~- 167 (241)
... . -..+|+.. .....++|||||++.+ +...|..+..+++.-....
T Consensus 260 ~~~---~---~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 260 ETL---L---ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERV 322 (534)
T ss_pred HHH---H---HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEEC
Confidence 211 1 11223221 1234579999999999 7888899988887532100
Q ss_pred -----CCCCeEEEEEeCCC-------CCCChhccCCCCcc-eEEEcCCCC--HHHHHHHHHHhHcCcc----CCCCCCHH
Q 026258 168 -----QLGKVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPN--EQSRMEILKIHAAGIA----KHGEIDYE 228 (241)
Q Consensus 168 -----~~~~~~vI~tt~~~-------~~l~~~l~~~~r~~-~~i~l~~p~--~~~r~~il~~~~~~~~----~~~~~~~~ 228 (241)
...++++|++|+.. ..+.+.+.. |+. ..|.+|+.. .+....+++.++.+.. ....++.+
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~ 400 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPS 400 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 01258899988653 123334444 453 255666654 3445556665554422 22467899
Q ss_pred HHHHHhhhccCC
Q 026258 229 AVVKLAEVSRRG 240 (241)
Q Consensus 229 ~l~~~~~~~~~~ 240 (241)
.+..+..+.|+|
T Consensus 401 a~~~L~~~~WPG 412 (534)
T TIGR01817 401 AIRVLMSCKWPG 412 (534)
T ss_pred HHHHHHhCCCCC
Confidence 999999998876
No 168
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.47 E-value=1.9e-12 Score=98.66 Aligned_cols=134 Identities=27% Similarity=0.425 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------
Q 026258 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA----------------------- 92 (241)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~----------------------- 92 (241)
|++++++.|.+.+.. + .-++.+||+||+|+||+++++.+++.+..
T Consensus 1 gq~~~~~~L~~~~~~-----------~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------G-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------T-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc-----------C-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788899999888863 1 44567999999999999999999987722
Q ss_pred ceEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC
Q 026258 93 NFLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (241)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 168 (241)
.++.+....... .. ....++.+...+. .....|++|||+|.+ ....++.+...+++-
T Consensus 69 d~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEep----- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEEP----- 129 (162)
T ss_dssp TEEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHST-----
T ss_pred ceEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcCC-----
Confidence 233333222100 00 1123333333322 234679999999999 788888888888853
Q ss_pred CCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCC
Q 026258 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203 (241)
Q Consensus 169 ~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p 203 (241)
..++.+|++|++++.+.+.++| |+ ..+.+++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 3489999999999999999999 98 66777654
No 169
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.46 E-value=6.3e-13 Score=114.23 Aligned_cols=183 Identities=27% Similarity=0.387 Sum_probs=128.5
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhc
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII 103 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~ 103 (241)
+..++..+||.+.+..++.+.+... .....+|||.|.+||||.-+|++|.+.. ..+|+.++|..+.
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 3667889999999999999998632 2556789999999999999999999877 6789999999886
Q ss_pred ccccchHHHHHHHHHHHHHh---------------CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc--CC
Q 026258 104 DKYIGESARLIREMFGYARD---------------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD--GF 166 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~---------------~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~ 166 (241)
.....+ ++|++.+. ...+-||+||+..+ ....|..+.+++++-+ ..
T Consensus 287 esLlES------ELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRv 349 (550)
T COG3604 287 ESLLES------ELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERV 349 (550)
T ss_pred hHHHHH------HHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeec
Confidence 433222 55666543 34569999999998 7889999999998643 11
Q ss_pred CCCC----CeEEEEEeCCC--CC-----CChhccCCCCcceEEEcCCCCHHHHH--------HHHHHhHcCccC-CCCCC
Q 026258 167 DQLG----KVKMIMATNRP--DV-----LDPALLRPGRLDRKIEIPLPNEQSRM--------EILKIHAAGIAK-HGEID 226 (241)
Q Consensus 167 ~~~~----~~~vI~tt~~~--~~-----l~~~l~~~~r~~~~i~l~~p~~~~r~--------~il~~~~~~~~~-~~~~~ 226 (241)
..+. .|++|++||.. +. ....+.. |+ .++.+..|...+|. .+++...+.... .-.++
T Consensus 350 G~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 350 GGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred CCCceeEEEEEEEeccchhHHHHHHcCcchhhhhh--cc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 1111 69999999963 11 2222222 44 35566666666655 233333333333 23568
Q ss_pred HHHHHHHhhhccCC
Q 026258 227 YEAVVKLAEVSRRG 240 (241)
Q Consensus 227 ~~~l~~~~~~~~~~ 240 (241)
.+++..+.++.++|
T Consensus 427 ~~Al~~L~~y~wPG 440 (550)
T COG3604 427 AEALELLSSYEWPG 440 (550)
T ss_pred HHHHHHHHcCCCCC
Confidence 88999998888776
No 170
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.45 E-value=3e-12 Score=111.49 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEechh-hcccccch
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSA-IIDKYIGE 109 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~~-~~~~~~~~ 109 (241)
.++|.+++++.+..++ ..+.+++|.||||||||+++++++..++. +|....+.. ......|.
T Consensus 21 ~i~gre~vI~lll~aa---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHH---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 4678888888887776 34678999999999999999999987743 334333321 11122221
Q ss_pred H-HHHH--HHHHHHHHh---CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-----CCCCeEEEEEe
Q 026258 110 S-ARLI--REMFGYARD---HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-----QLGKVKMIMAT 178 (241)
Q Consensus 110 ~-~~~~--~~~f~~~~~---~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----~~~~~~vI~tt 178 (241)
. .... ...|..... ....++|+||++.+ .+..+..+...+++..-.. .-+..+++++|
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 1 0000 111211111 12349999999888 8889999999997654111 11123445555
Q ss_pred CCCCC---CChhccCCCCcceEEEcCCCC-HHHHHHHHHHh
Q 026258 179 NRPDV---LDPALLRPGRLDRKIEIPLPN-EQSRMEILKIH 215 (241)
Q Consensus 179 ~~~~~---l~~~l~~~~r~~~~i~l~~p~-~~~r~~il~~~ 215 (241)
|...+ ..+++.+ ||...+.+|+|+ .++..+++...
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 64321 2347877 997789999997 46668888764
No 171
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.45 E-value=2.1e-12 Score=108.10 Aligned_cols=89 Identities=31% Similarity=0.355 Sum_probs=58.8
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC------------CCCCCChhccCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN------------RPDVLDPALLRPGR 193 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~------------~~~~l~~~l~~~~r 193 (241)
|+||||||++.| +-+-..-+.+.++.- -.-.+|++|| .|+.+|..+++ |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs~------~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALESE------LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTST------T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcCC------CCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 789999999999 776666666666421 1346778887 34568888888 8
Q ss_pred cceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 194 LDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 194 ~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
+ ..|...+++.++..+|++.+++...+ .++.+++..+++.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v--~i~~~al~~L~~i 379 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDV--EISEDALDLLTKI 379 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT----B-HHHHHHHHHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcC--cCCHHHHHHHHHH
Confidence 8 77899999999999999999988765 5667777776654
No 172
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.45 E-value=2.6e-12 Score=98.38 Aligned_cols=120 Identities=31% Similarity=0.441 Sum_probs=82.5
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchH
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES 110 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~ 110 (241)
++|.+..++++.+.+... . ..+.+|+|+|++||||+.+|+++.+.. +.+|+.++|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~----------a-~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~----- 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------A-SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEE----- 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------T-TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HH-----
T ss_pred CEeCCHHHHHHHHHHHHH----------h-CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcc-----
Confidence 467778888888777532 2 445789999999999999999999876 578999999987422
Q ss_pred HHHHHHHHHH---------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC------CC
Q 026258 111 ARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QL 169 (241)
Q Consensus 111 ~~~~~~~f~~---------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~ 169 (241)
..-..+|+. ......+.|||||++.| +...|..+.++++.-.-.. ..
T Consensus 65 -~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 65 -LLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVP 132 (168)
T ss_dssp -HHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE
T ss_pred -hhhhhhhccccccccccccccCCceeeccceEEeecchhhh-----------HHHHHHHHHHHHhhchhcccccccccc
Confidence 122244432 23355689999999999 8899999999998643111 11
Q ss_pred CCeEEEEEeCCC
Q 026258 170 GKVKMIMATNRP 181 (241)
Q Consensus 170 ~~~~vI~tt~~~ 181 (241)
-++++|++|+.+
T Consensus 133 ~~~RiI~st~~~ 144 (168)
T PF00158_consen 133 VDVRIIASTSKD 144 (168)
T ss_dssp --EEEEEEESS-
T ss_pred ccceEEeecCcC
Confidence 279999999853
No 173
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.45 E-value=9.6e-14 Score=108.18 Aligned_cols=124 Identities=24% Similarity=0.336 Sum_probs=70.5
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-eEE-Eechhhcc---
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-FLK-VVSSAIID--- 104 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-~~~-v~~~~~~~--- 104 (241)
+|.+|+|++..|+.+.-++.. +.++++.||||||||++++.+...+..- ..+ .....+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 588999999999999888763 4689999999999999999999765110 000 00000000
Q ss_pred -----c--------ccchHHHHHHHHHH--------HHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 105 -----K--------YIGESARLIREMFG--------YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 105 -----~--------~~~~~~~~~~~~f~--------~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
. .+-. ......+++ .+...+.+|||+||+..+ +....+.+.+.++.-
T Consensus 66 ~~~~~~~~~~~Pfr~phh-s~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef-----------~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHH-SASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF-----------DRSVLDALRQPLEDG 133 (206)
T ss_dssp -S---EEEE---EEEE-T-T--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHHHS
T ss_pred CCCCCceecCCCcccCCC-CcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc-----------CHHHHHHHHHHHHCC
Confidence 0 0000 000111121 122345579999999888 788888888887753
Q ss_pred cC-CCCC-------CCeEEEEEeCC
Q 026258 164 DG-FDQL-------GKVKMIMATNR 180 (241)
Q Consensus 164 ~~-~~~~-------~~~~vI~tt~~ 180 (241)
.- +.+. .++.+|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 21 1111 16788888873
No 174
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.45 E-value=2e-12 Score=118.87 Aligned_cols=182 Identities=23% Similarity=0.285 Sum_probs=121.1
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
..+|++++|.+...+++.+.+... .....+++|+|++||||+++|+++.+.. +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457899999999999888887642 1345679999999999999999999876 46999999988742
Q ss_pred cccchHHHHHHHHHHHH------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC---
Q 026258 105 KYIGESARLIREMFGYA------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL--- 169 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--- 169 (241)
. .....+|+.. .....+.|||||++.+ ....|..+.++++.-......
T Consensus 390 ~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~ 452 (638)
T PRK11388 390 E------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRR 452 (638)
T ss_pred H------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 1 1112333321 1244679999999999 888899998888643211111
Q ss_pred ---CCeEEEEEeCCCC-------CCChhccCCCCcceEEEcCCCCHHHH----HHHHHHhHcCc----cCCCCCCHHHHH
Q 026258 170 ---GKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSR----MEILKIHAAGI----AKHGEIDYEAVV 231 (241)
Q Consensus 170 ---~~~~vI~tt~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r----~~il~~~~~~~----~~~~~~~~~~l~ 231 (241)
-++++|++|+..- .+.+.+.. |+ ..+.+..|...+| ..+++.++... ...-.++.+.+.
T Consensus 453 ~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~ 529 (638)
T PRK11388 453 LIPVDVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALA 529 (638)
T ss_pred eEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHH
Confidence 1578999887531 22333333 44 2345555555454 34555544432 112357899999
Q ss_pred HHhhhccCC
Q 026258 232 KLAEVSRRG 240 (241)
Q Consensus 232 ~~~~~~~~~ 240 (241)
.+.++.|+|
T Consensus 530 ~L~~y~WPG 538 (638)
T PRK11388 530 RLVSYRWPG 538 (638)
T ss_pred HHHcCCCCC
Confidence 999998876
No 175
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.45 E-value=9e-12 Score=103.11 Aligned_cols=89 Identities=28% Similarity=0.366 Sum_probs=63.2
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC------------CCCCCChhccCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN------------RPDVLDPALLRPGR 193 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~------------~~~~l~~~l~~~~r 193 (241)
|+||||||++.| +-+....+++.++.- + .-.+|++|| .|+.++..+.+ |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEse--~----aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALESE--L----APIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhcc--c----CcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 789999999888 655555555555421 1 345677776 34567778887 7
Q ss_pred cceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 194 LDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 194 ~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
. ..|...+++.++.++|++.+.+.... ..+.+++..+++.
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i--~l~~~Ale~L~~i 392 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDI--ELSDDALEYLTDI 392 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhcc--ccCHHHHHHHHhh
Confidence 7 66888999999999999998887655 4566666666553
No 176
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.44 E-value=8.9e-13 Score=112.37 Aligned_cols=186 Identities=26% Similarity=0.306 Sum_probs=124.6
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEechh
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSA 101 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~~~~ 101 (241)
.....+.+++|.+...+++.+.+..+ ...+.++||.|++||||+.+++.+.... ..+|+.++|..
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHH
Confidence 45667889999999999999988642 2456789999999999999999997433 67899999999
Q ss_pred hcccccchHHHHHHHHHHHHHh---------------CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC-
Q 026258 102 IIDKYIGESARLIREMFGYARD---------------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG- 165 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~---------------~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~- 165 (241)
+....... .+|++.+. ...+.||+||++.+ ....|..+.+++++..-
T Consensus 141 ~~en~~~~------eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~ 203 (403)
T COG1221 141 YSENLQEA------ELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYR 203 (403)
T ss_pred hCcCHHHH------HHhccccceeecccCCcCchheecCCCEEehhhhhhC-----------CHhHHHHHHHHHHcCceE
Confidence 86543221 25555432 44569999999999 88899999999987431
Q ss_pred -----CCCCCCeEEEEEeCCC--CCCCh--hccCCCCcceEEEcCCCCH--HHHHHH----HHHhHcCccCCCCCC-HHH
Q 026258 166 -----FDQLGKVKMIMATNRP--DVLDP--ALLRPGRLDRKIEIPLPNE--QSRMEI----LKIHAAGIAKHGEID-YEA 229 (241)
Q Consensus 166 -----~~~~~~~~vI~tt~~~--~~l~~--~l~~~~r~~~~i~l~~p~~--~~r~~i----l~~~~~~~~~~~~~~-~~~ 229 (241)
.....+|++|++|+.. +.+-. .+.++ ++...|.+|+..+ +++..+ ++.++++......++ .+.
T Consensus 204 rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a 282 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEA 282 (403)
T ss_pred ecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 1233489999998753 22333 33331 3444555555533 222233 334444444443333 477
Q ss_pred HHHHhhhccCC
Q 026258 230 VVKLAEVSRRG 240 (241)
Q Consensus 230 l~~~~~~~~~~ 240 (241)
+..+.++.+.|
T Consensus 283 ~~~L~~y~~pG 293 (403)
T COG1221 283 LRALLAYDWPG 293 (403)
T ss_pred HHHHHhCCCCC
Confidence 77777776655
No 177
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.44 E-value=2.3e-12 Score=115.30 Aligned_cols=180 Identities=23% Similarity=0.298 Sum_probs=121.6
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY 106 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~ 106 (241)
.+.+++|.+..++++.+.+... . ..+.+|+|+|++||||+++++++.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------A-ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5778999999999999988642 2 446789999999999999999999875 5789999999874321
Q ss_pred cchHHHHHHHHHHH---------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-----
Q 026258 107 IGESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF----- 166 (241)
Q Consensus 107 ~~~~~~~~~~~f~~---------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----- 166 (241)
. -..+|+. ......+.|||||++.+ ....|..+.++++...-.
T Consensus 254 ~------e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 254 A------ESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred H------HHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCC
Confidence 1 1122321 12344579999999999 788888898888753210
Q ss_pred -CCCCCeEEEEEeCCCC-------CCChhccCCCCcceEEEcCCCCHHHH----HHHHHHhHcCcc-----CCCCCCHHH
Q 026258 167 -DQLGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSR----MEILKIHAAGIA-----KHGEIDYEA 229 (241)
Q Consensus 167 -~~~~~~~vI~tt~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r----~~il~~~~~~~~-----~~~~~~~~~ 229 (241)
....++++|++|+..- .+.+.+.. |+. .+.+..|...+| ..+++.++++.. ....++.+.
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a 393 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAA 393 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 1112689999997641 24444444 552 233444444444 344444444321 224688999
Q ss_pred HHHHhhhccCC
Q 026258 230 VVKLAEVSRRG 240 (241)
Q Consensus 230 l~~~~~~~~~~ 240 (241)
+..+.++.|+|
T Consensus 394 ~~~L~~y~WPG 404 (509)
T PRK05022 394 QAALLAYDWPG 404 (509)
T ss_pred HHHHHhCCCCC
Confidence 99999998876
No 178
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.44 E-value=1.7e-12 Score=116.37 Aligned_cols=185 Identities=23% Similarity=0.310 Sum_probs=121.3
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhh
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAI 102 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~ 102 (241)
....+|++++|.+...+++.+.+... . ....+++|+|++||||+++|+++.... ..+|+.++|..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~----------A-~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL----------A-MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH----------h-CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 46679999999999888888877531 1 345679999999999999999987665 468999999887
Q ss_pred cccccchHHHHHHHHHHHH---------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC--
Q 026258 103 IDKYIGESARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-- 165 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~---------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-- 165 (241)
..... -..+|+.+ .....+.|||||++.+ +...|..+.++++.-.-
T Consensus 267 ~~~~~------e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~ 329 (520)
T PRK10820 267 PDDVV------ESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRR 329 (520)
T ss_pred CHHHH------HHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC-----------CHHHHHHHHHHHhcCCccc
Confidence 42111 11223211 1234579999999999 78889999888875321
Q ss_pred C----CCCCCeEEEEEeCCC-C------CCChhccCCCCcce-EEEcCCCCH--HHHHHHHHHhHcC----ccC-CCCCC
Q 026258 166 F----DQLGKVKMIMATNRP-D------VLDPALLRPGRLDR-KIEIPLPNE--QSRMEILKIHAAG----IAK-HGEID 226 (241)
Q Consensus 166 ~----~~~~~~~vI~tt~~~-~------~l~~~l~~~~r~~~-~i~l~~p~~--~~r~~il~~~~~~----~~~-~~~~~ 226 (241)
. ....++++|++|+.+ . .+.+.+.. |+.. .+.+|+... +....+++.++++ ... ...++
T Consensus 330 ~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 330 VGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 0 111267899988654 1 24445555 5532 444444432 2333344444433 222 23678
Q ss_pred HHHHHHHhhhccCC
Q 026258 227 YEAVVKLAEVSRRG 240 (241)
Q Consensus 227 ~~~l~~~~~~~~~~ 240 (241)
.+.+..+..+.|+|
T Consensus 408 ~~a~~~L~~y~WPG 421 (520)
T PRK10820 408 ADLNTVLTRYGWPG 421 (520)
T ss_pred HHHHHHHhcCCCCC
Confidence 99999999998876
No 179
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=4e-12 Score=107.33 Aligned_cols=130 Identities=22% Similarity=0.430 Sum_probs=91.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------eEEEechhhcccccchHHHHHHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------FLKVVSSAIIDKYIGESARLIREMFG 119 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~~~~~f~ 119 (241)
+.++.+||+||+|+||+++++.+|+.+.+. ++.+....- +.. -....++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHH
Confidence 345679999999999999999999888432 222211100 000 01223333333
Q ss_pred HH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcc
Q 026258 120 YA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLD 195 (241)
Q Consensus 120 ~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~ 195 (241)
.+ ......|++||++|.+ +....+.+...+++ +.+++.+|++|++++.+.+.++| |+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc- 157 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC- 157 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-
Confidence 32 2345679999999999 67677777777764 33478999999999999999999 99
Q ss_pred eEEEcCCCCHHHHHHHHHHh
Q 026258 196 RKIEIPLPNEQSRMEILKIH 215 (241)
Q Consensus 196 ~~i~l~~p~~~~r~~il~~~ 215 (241)
..+.|++|+.++..+.+...
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHh
Confidence 56999999999888777654
No 180
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.43 E-value=1.6e-12 Score=115.85 Aligned_cols=181 Identities=24% Similarity=0.333 Sum_probs=115.9
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCceEEE
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN-----------IDANFLKV 97 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~-----------l~~~~~~v 97 (241)
.+|++++|.+...+++.+.+..+ .....+|+|.|++||||+++++++.+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 57899999999999999888632 144568999999999999999999987 36799999
Q ss_pred echhhcccccchHHHHHHHHHHH----------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 98 VSSAIIDKYIGESARLIREMFGY----------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~----------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+|..+...... ..+|++ ......+.|||||++.+ +...|..+.++++
T Consensus 285 nCaal~e~lle------seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-----------p~~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLLE------AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM-----------PLPLQTRLLRVLE 347 (538)
T ss_pred ecccCChhhHH------HHhcCCccccccCccccccCCchhccCCCEEEEcChHhC-----------CHHHHHHHHhhhh
Confidence 99987432111 123331 11234579999999999 8889999999987
Q ss_pred HhcCC------CCCCCeEEEEEeCCC-C------CCChhccCCCCcceEEEcCCCCHHHH----HHHHHHhHcCcc--CC
Q 026258 162 QLDGF------DQLGKVKMIMATNRP-D------VLDPALLRPGRLDRKIEIPLPNEQSR----MEILKIHAAGIA--KH 222 (241)
Q Consensus 162 ~~~~~------~~~~~~~vI~tt~~~-~------~l~~~l~~~~r~~~~i~l~~p~~~~r----~~il~~~~~~~~--~~ 222 (241)
+..-. ...-++++|++|+.. + .+.+.+.. |+. .+.+..|...+| ..+.+.++++.. ..
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~ 424 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALS 424 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcC
Confidence 64211 111257899998754 1 12223333 332 234444444444 445555555421 11
Q ss_pred CCCCHHHH-------HHHhhhccCC
Q 026258 223 GEIDYEAV-------VKLAEVSRRG 240 (241)
Q Consensus 223 ~~~~~~~l-------~~~~~~~~~~ 240 (241)
..++.+.+ ..+..+.|+|
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~WPG 449 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDWPG 449 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCCCc
Confidence 22444443 5666666665
No 181
>PRK04132 replication factor C small subunit; Provisional
Probab=99.43 E-value=3.5e-12 Score=118.20 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=111.3
Q ss_pred CCceEEEEc--CCCChHHHHHHHHHHHh-----CCceEEEechhhcccccchHHHHHHHHHHHHHh--CCCeEEEEcCcc
Q 026258 65 PPKGVLLYG--PPGTGKTLLARAIASNI-----DANFLKVVSSAIIDKYIGESARLIREMFGYARD--HQPCIIFMDEID 135 (241)
Q Consensus 65 ~~~~vll~G--~~GsGKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~vl~lDe~d 135 (241)
++-+-++.| |++.||||+++++|+++ +..++++++++..+ .......+......... .+..|++|||+|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 344567778 99999999999999998 45789999887422 11222222222211111 134799999999
Q ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHh
Q 026258 136 AIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIH 215 (241)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~ 215 (241)
.+ +...+..+..++++. .+++.+|++||+++.+.++++| || ..+.|++|+.++....++..
T Consensus 641 ~L-----------t~~AQnALLk~lEep-----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 AL-----------TQDAQQALRRTMEMF-----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cC-----------CHHHHHHHHHHhhCC-----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 99 667788888888753 2478999999999999999999 98 77999999999999888887
Q ss_pred HcCccCCCCCCHHHHHHHhhhccCC
Q 026258 216 AAGIAKHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (241)
+..... .++.+.+..++..+.++
T Consensus 702 ~~~Egi--~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 702 AENEGL--ELTEEGLQAILYIAEGD 724 (846)
T ss_pred HHhcCC--CCCHHHHHHHHHHcCCC
Confidence 765443 35666676666665543
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.42 E-value=7.9e-13 Score=120.92 Aligned_cols=161 Identities=24% Similarity=0.381 Sum_probs=107.9
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI------------------- 90 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l------------------- 90 (241)
.|.+|+|++..+..+.-.+..+ ...+++|.|++|||||++++++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5889999999999988777643 12479999999999999999999887
Q ss_pred ----------------CCceEEEechhhcccccchH--HHHHHH---H--HHHHHhCCCeEEEEcCcccccCCCCCCCCC
Q 026258 91 ----------------DANFLKVVSSAIIDKYIGES--ARLIRE---M--FGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147 (241)
Q Consensus 91 ----------------~~~~~~v~~~~~~~~~~~~~--~~~~~~---~--f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~ 147 (241)
..+|+.+.+........|.. ...+.. . -+.......++|||||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC----------
Confidence 23455544443322222221 111100 0 01111234569999999999
Q ss_pred ccHHHHHHHHHHHHHhc-CC-------CCCCCeEEEEEeCCC-CCCChhccCCCCcceEEEcCCC-CHHHHHHHHHHhH
Q 026258 148 ADREIQRTLMELLNQLD-GF-------DQLGKVKMIMATNRP-DVLDPALLRPGRLDRKIEIPLP-NEQSRMEILKIHA 216 (241)
Q Consensus 148 ~~~~~~~~l~~ll~~~~-~~-------~~~~~~~vI~tt~~~-~~l~~~l~~~~r~~~~i~l~~p-~~~~r~~il~~~~ 216 (241)
+...+..+...++.-. .+ ....++.+|+|+|.. ..+.+.+.+ ||...+.++.+ +.+++.++++...
T Consensus 139 -~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 139 -DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred -CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 7888888888887421 00 111357888887753 358888998 99988888776 4677888887543
No 183
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.5e-12 Score=111.92 Aligned_cols=182 Identities=47% Similarity=0.741 Sum_probs=148.1
Q ss_pred ccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEE
Q 026258 51 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIF 130 (241)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~ 130 (241)
++..+..+..+++.++.+++++||||+|||.++++++.. +..+..++.+.....+.+.....+...|..+....|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 345677788889999999999999999999999999998 6655888888888899999999999999999999999999
Q ss_pred EcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHH
Q 026258 131 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRME 210 (241)
Q Consensus 131 lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~ 210 (241)
+||++.+..................+...+..+ .+.. +.++..++.+..++++++++++|...+.++.|+...+.+
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~---~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 82 IDEIDALAPKRSSDQGEVERRVVAQLLALMDGL---KRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred echhhhcccCccccccchhhHHHHHHHHhcccc---cCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 999999988776522233333344444444444 3333 777778899999999999999999999999999999999
Q ss_pred HHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 211 ILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 211 il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
++..+..........+.+.++..+..+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~a~~~~~~ 184 (494)
T COG0464 158 ILQIHTRLMFLGPPGTGKTLAARTVGK 184 (494)
T ss_pred HHHHHHhcCCCcccccHHHHHHhcCCc
Confidence 999888887766666777777766543
No 184
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.41 E-value=2.8e-12 Score=114.36 Aligned_cols=184 Identities=23% Similarity=0.307 Sum_probs=120.1
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhc
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII 103 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~ 103 (241)
...+|++++|.+...+++.+.+..+ . ....+|+|.|++||||+++|+++.+.. +.+|+.++|..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~----------A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLY----------A-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3467899999999999999888632 1 445789999999999999999999765 5799999999874
Q ss_pred ccccchHHHHHHHHHHHH----------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-
Q 026258 104 DKYIGESARLIREMFGYA----------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF- 166 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~----------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~- 166 (241)
.... -..+|++. .....+.|||||++.+ +...|..+.+++++..-.
T Consensus 276 e~ll------eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r 338 (526)
T TIGR02329 276 ESLL------EAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVR 338 (526)
T ss_pred hhHH------HHHhcCCcccccccccccccccchhhcCCceEEecChHhC-----------CHHHHHHHHHHHhcCcEEe
Confidence 3211 11233321 1234579999999999 888999999998764311
Q ss_pred -----CCCCCeEEEEEeCCCC-------CCChhccCCCCcc-eEEEcCCCCH--HHHHHHHHHhHcCccCC--CCCCHHH
Q 026258 167 -----DQLGKVKMIMATNRPD-------VLDPALLRPGRLD-RKIEIPLPNE--QSRMEILKIHAAGIAKH--GEIDYEA 229 (241)
Q Consensus 167 -----~~~~~~~vI~tt~~~~-------~l~~~l~~~~r~~-~~i~l~~p~~--~~r~~il~~~~~~~~~~--~~~~~~~ 229 (241)
...-++++|++|+..- .+.+.+.. |+. ..+.+|+... +....+++.++.+.... ..++.+.
T Consensus 339 ~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 416 (526)
T TIGR02329 339 VGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA 416 (526)
T ss_pred cCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1112568999987541 12223333 442 2455555433 34445555555543211 2366677
Q ss_pred HHH-------HhhhccCC
Q 026258 230 VVK-------LAEVSRRG 240 (241)
Q Consensus 230 l~~-------~~~~~~~~ 240 (241)
+.. +.++.|+|
T Consensus 417 ~~~~~~~~~~L~~y~WPG 434 (526)
T TIGR02329 417 AQVLAGVADPLQRYPWPG 434 (526)
T ss_pred HHHhHHHHHHHHhCCCCc
Confidence 666 77777765
No 185
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.41 E-value=7.8e-13 Score=98.32 Aligned_cols=112 Identities=33% Similarity=0.450 Sum_probs=73.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccc--cchHHHHHHHHH-------HHHHhCCCeEEEEcCccccc
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY--IGESARLIREMF-------GYARDHQPCIIFMDEIDAIG 138 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~--~~~~~~~~~~~f-------~~~~~~~~~vl~lDe~d~l~ 138 (241)
+++|+||||||||++++.+|+.++.++..+.+....... .+..... ...+ ..+. ..+.+++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~-~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAM-RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTH-HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec-ccccccccccccccc-cceeEEEECCcccC-
Confidence 589999999999999999999999999999887654310 0000000 0000 0000 14679999999988
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHhcCC-------C-CCC------CeEEEEEeCCCC----CCChhccCCCCc
Q 026258 139 GRRFSEGTSADREIQRTLMELLNQLDGF-------D-QLG------KVKMIMATNRPD----VLDPALLRPGRL 194 (241)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~-------~-~~~------~~~vI~tt~~~~----~l~~~l~~~~r~ 194 (241)
++..+..+..+++...-. . ..+ ++++|+|+|... .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 778888888888753211 0 011 389999999887 89999998 87
No 186
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.41 E-value=7.3e-12 Score=116.03 Aligned_cols=188 Identities=23% Similarity=0.332 Sum_probs=122.1
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
+..|++++|.+..++.+.+.+... .....+|+|.|++|||||++|+++.... +.+++.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 457889999999999998888642 1445689999999999999999998865 56999999987642
Q ss_pred cccch-----H----HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------CCC
Q 026258 105 KYIGE-----S----ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQL 169 (241)
Q Consensus 105 ~~~~~-----~----~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~~~ 169 (241)
..... . ........+.......++|||||++.+ +...|..+..+++...-. ...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 509 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKIIQ 509 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCccc
Confidence 11100 0 000001112223344689999999999 888899999988763210 112
Q ss_pred CCeEEEEEeCCCC-------CCChhccCCCCcceEEEcCCCCHHHHH----HHHHHhHcCc----cCC-CCCCHHHHHHH
Q 026258 170 GKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGI----AKH-GEIDYEAVVKL 233 (241)
Q Consensus 170 ~~~~vI~tt~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~----~il~~~~~~~----~~~-~~~~~~~l~~~ 233 (241)
.++++|++|+..- .+...+.. |+. .+.+..|...+|. .+++.++.+. ... ..++.+.+..+
T Consensus 510 ~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 510 TDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3689999987541 23333333 442 3445555555554 3555554432 211 25788999999
Q ss_pred hhhccCC
Q 026258 234 AEVSRRG 240 (241)
Q Consensus 234 ~~~~~~~ 240 (241)
..+.|+|
T Consensus 587 ~~y~WPG 593 (686)
T PRK15429 587 SNMEWPG 593 (686)
T ss_pred HhCCCCC
Confidence 9998876
No 187
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.40 E-value=1.2e-12 Score=106.77 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=123.3
Q ss_pred hhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--
Q 026258 16 PVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-- 93 (241)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-- 93 (241)
+....-|-+++++-.++++++.++....+.++... ....|.|+|||||+|||+...+.|..+..+
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 33333444558999999999999999999998643 233489999999999999999999988653
Q ss_pred ----eEEEechhhcccccchHHHHHHHHHHHHHh-------CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 94 ----FLKVVSSAIIDKYIGESARLIREMFGYARD-------HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 94 ----~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~-------~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
+...+.++-.+ . .......+.|+..+. ..+.++++||.|.+ ....|.++.+.+..
T Consensus 92 ~~~m~lelnaSd~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek 157 (360)
T KOG0990|consen 92 TTSMLLELNASDDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEK 157 (360)
T ss_pred chhHHHHhhccCccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHH
Confidence 11222222111 1 112222344555543 25789999999999 77788888887765
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccC
Q 026258 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK 221 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~ 221 (241)
... ++++...+|.+..+.+++++ || ..+.+.+.+.++....+..++.....
T Consensus 158 ~t~-----n~rF~ii~n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 158 YTA-----NTRFATISNPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred hcc-----ceEEEEeccChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhcchh
Confidence 543 78888999999999999999 88 44677777888888888877766655
No 188
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.40 E-value=5e-12 Score=107.14 Aligned_cols=164 Identities=22% Similarity=0.354 Sum_probs=112.1
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc----
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII---- 103 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~---- 103 (241)
+..|..++|++..+..|.-....| .+ .++||.|+.|+||||++|+++..+..--+...|.-.+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P--------~i-----ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP--------QI-----GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc--------cc-----ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 457889999999999998776654 33 3899999999999999999998883222111321111
Q ss_pred ----------------------------ccccchHHHH------HHHHH---------HHHHhCCCeEEEEcCcccccCC
Q 026258 104 ----------------------------DKYIGESARL------IREMF---------GYARDHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 104 ----------------------------~~~~~~~~~~------~~~~f---------~~~~~~~~~vl~lDe~d~l~~~ 140 (241)
+.-.+..+.. +.+.. +..-..+.+|+|+||++.|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL--- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc---
Confidence 0001111110 01111 1112244579999999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHHh-cCC-------CCCCCeEEEEEeCCCC-CCChhccCCCCcceEEEcCCC-CHHHHHH
Q 026258 141 RFSEGTSADREIQRTLMELLNQL-DGF-------DQLGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLP-NEQSRME 210 (241)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~ll~~~-~~~-------~~~~~~~vI~tt~~~~-~l~~~l~~~~r~~~~i~l~~p-~~~~r~~ 210 (241)
+.+.+..+...+.+- +.. ...-++.+|+|+|..+ +|.+.|++ ||+..+.+..| +.++|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 889999999988763 222 2222788899998754 79999999 99999998655 7899999
Q ss_pred HHHHhHc
Q 026258 211 ILKIHAA 217 (241)
Q Consensus 211 il~~~~~ 217 (241)
|++....
T Consensus 227 Ii~r~~~ 233 (423)
T COG1239 227 IIRRRLA 233 (423)
T ss_pred HHHHHHH
Confidence 9987664
No 189
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=2.3e-11 Score=102.19 Aligned_cols=143 Identities=17% Similarity=0.289 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------
Q 026258 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------ 93 (241)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------------------------ 93 (241)
....+.+.+.+.. | .-++.++|+||+|+||+++++.+|+.+.+.
T Consensus 8 ~~~~~~l~~~~~~-----------~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 8 QPTYQQITQAFQQ-----------G-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred HHHHHHHHHHHHc-----------C-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4555666666642 1 345679999999999999999999887331
Q ss_pred eEEEechhhcccccchHHHHHHHHHH----HHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFG----YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~----~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 169 (241)
++.+.... +... ....++.+.. ........|++||++|.+ ....++.+...+++ +.
T Consensus 76 ~~~i~p~~--~~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----Pp 135 (325)
T PRK06871 76 FHILEPID--NKDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----PR 135 (325)
T ss_pred EEEEcccc--CCCC--CHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----CC
Confidence 22221100 0101 1222333322 233344679999999999 66667777777664 44
Q ss_pred CCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHh
Q 026258 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIH 215 (241)
Q Consensus 170 ~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~ 215 (241)
+++.+|++|++++.+.+.++| |+ ..+.|++|+.++..+.+...
T Consensus 136 ~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 588999999999999999999 99 77899999998888777654
No 190
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.36 E-value=2.2e-12 Score=99.06 Aligned_cols=116 Identities=24% Similarity=0.334 Sum_probs=72.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC----ceEEEechhhcccc--cchHHHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDA----NFLKVVSSAIIDKY--IGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~----~~~~v~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
-.+++|.||+|||||.+++++++.+.. +++.++++.+.... .......+...-..+......||+|||+|+...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 457999999999999999999999996 99999999987510 000111111111111222234999999999933
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCC------CCCeEEEEEeCCC
Q 026258 140 RRFSEGTSADREIQRTLMELLNQLDGFDQ------LGKVKMIMATNRP 181 (241)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~~~~vI~tt~~~ 181 (241)
......+......++.++.+++.-.-... -.++.+|+|+|--
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 21111111222788899998886321111 1378999999854
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.36 E-value=2.1e-11 Score=89.63 Aligned_cols=123 Identities=30% Similarity=0.464 Sum_probs=77.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc---eEEEechhhccc--------------ccchHHHHHHHHHHHHHhCCCeE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSSAIIDK--------------YIGESARLIREMFGYARDHQPCI 128 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~---~~~v~~~~~~~~--------------~~~~~~~~~~~~f~~~~~~~~~v 128 (241)
+.+++|+||||||||++++.++..+... ++.+++...... ............+..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999999765 777776654322 11233445566777777777899
Q ss_pred EEEcCcccccCCCCCCCCCccHHHHHHHHH-----HHHHhcCCCCCCCeEEEEEeCC-CCCCChhccCCCCcceEEEcCC
Q 026258 129 IFMDEIDAIGGRRFSEGTSADREIQRTLME-----LLNQLDGFDQLGKVKMIMATNR-PDVLDPALLRPGRLDRKIEIPL 202 (241)
Q Consensus 129 l~lDe~d~l~~~~~~~~~~~~~~~~~~l~~-----ll~~~~~~~~~~~~~vI~tt~~-~~~l~~~l~~~~r~~~~i~l~~ 202 (241)
|++||++.+.... ....... ..... .......+|+++|. ....+..+.. ++...+.+..
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 146 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLL---KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLL 146 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHH---HhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecC
Confidence 9999999984321 1111111 00111 11236788888886 2334444544 6666665544
Q ss_pred C
Q 026258 203 P 203 (241)
Q Consensus 203 p 203 (241)
+
T Consensus 147 ~ 147 (148)
T smart00382 147 I 147 (148)
T ss_pred C
Confidence 3
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=4.9e-11 Score=100.98 Aligned_cols=146 Identities=15% Similarity=0.213 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------
Q 026258 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------------------------ 93 (241)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------------------------ 93 (241)
+...+++.+.+.. + +-++.+||+||+|+||++++.++|+.+-+.
T Consensus 8 ~~~~~~l~~~~~~-----------~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 8 RPDYEQLVGSYQA-----------G-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred hHHHHHHHHHHHc-----------C-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 4455666666532 1 445679999999999999999999887321
Q ss_pred eEEEechhh-cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 94 FLKVVSSAI-IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 94 ~~~v~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
+..+....- ..-.++........+..........|++||++|.+ .....+.+...+++ +.+++
T Consensus 76 ~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t 139 (334)
T PRK07993 76 YYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----PPENT 139 (334)
T ss_pred EEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----CCCCe
Confidence 222211100 00111122222222333333455679999999999 66666777776663 44589
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHH
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~ 214 (241)
.+|++|++++.+.+.++| |+. .+.+++|+.++..+.+..
T Consensus 140 ~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 140 WFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred EEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 999999999999999999 994 689999998888877653
No 193
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.35 E-value=6.4e-11 Score=99.85 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=48.7
Q ss_pred ccc-cccchHHHHHHHHHHhhcccCChHHHHhcCC-CCCceEEEEcCCCChHHHHHHHHHHHhCC-------ceEEEec
Q 026258 30 SYS-AVGGLSDQIRELRESIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDA-------NFLKVVS 99 (241)
Q Consensus 30 ~~~-~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~vll~G~~GsGKTtl~~~la~~l~~-------~~~~v~~ 99 (241)
-|+ ++.|+++.+.++.+++... ..|. .....++|+|||||||||+++++++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~--------a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSA--------AQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHH--------HhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 345 8999999999999998754 2222 23467899999999999999999999855 6666654
No 194
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.1e-11 Score=100.34 Aligned_cols=111 Identities=24% Similarity=0.309 Sum_probs=76.5
Q ss_pred CeEEEEcCcccccCCCCCCC-CCccHHHHHHHHHHHHHhcCC-----CCCCCeEEEEEe----CCCCCCChhccCCCCcc
Q 026258 126 PCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQLDGF-----DQLGKVKMIMAT----NRPDVLDPALLRPGRLD 195 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~-----~~~~~~~vI~tt----~~~~~l~~~l~~~~r~~ 195 (241)
.+++||||+|.++....... +.+....|+-+.-+++.-.-. -..+++.+|++. +.|+++-|.|+. ||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 46999999999997775333 445566777777776542211 223478888875 467788899988 999
Q ss_pred eEEEcCCCCHHHHHHHHH-----------HhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 196 RKIEIPLPNEQSRMEILK-----------IHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 196 ~~i~l~~p~~~~r~~il~-----------~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
..+++...+.+.-..||. .+++...+.-.+..+.|..+++.+.
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 999999999998887775 2233333333455677777776653
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.3e-10 Score=97.39 Aligned_cols=146 Identities=20% Similarity=0.284 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------eEE
Q 026258 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---------------------FLK 96 (241)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---------------------~~~ 96 (241)
+...+++...+.. + +-++.+||+||+|+||++++.++|+.+.+. +..
T Consensus 10 ~~~~~~l~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDA-----------G-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHc-----------C-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 4566677766642 1 345679999999999999999999877321 111
Q ss_pred Ee-chhhcccc--cchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC
Q 026258 97 VV-SSAIIDKY--IGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (241)
Q Consensus 97 v~-~~~~~~~~--~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 169 (241)
+. .++-.+.. ..-....++.+...+.. ....|++||++|.+ .....+.+...+++ +.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----CC
Confidence 21 00000000 00112334444333322 33569999999999 66677777777764 33
Q ss_pred CCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHH
Q 026258 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 170 ~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~ 214 (241)
+++.+|++|++++.+.+.++| |+ ..+.|++|+.++-.+.+..
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 478899999999999999999 99 7789999999887777664
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=8.5e-11 Score=98.50 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------c
Q 026258 37 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----------------------N 93 (241)
Q Consensus 37 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~-----------------------~ 93 (241)
+.+..+++...+.. + +-++.+||.||.|+||+++++.+|+.+.+ .
T Consensus 8 l~~~~~~l~~~~~~-----------~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDA-----------G-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHc-----------C-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 34566677766642 1 44567999999999999999999987732 1
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL 169 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 169 (241)
++.+....- ++.+ ....++.+...+ ......|++||++|.+ .....+.+...+++ +.
T Consensus 76 ~~~i~p~~~-~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 136 (319)
T PRK06090 76 LHVIKPEKE-GKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PA 136 (319)
T ss_pred EEEEecCcC-CCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CC
Confidence 222221110 0001 112233332222 2344679999999999 66666777777664 44
Q ss_pred CCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHH
Q 026258 170 GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 170 ~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~ 214 (241)
+++.+|++|++++.+.+.++| |+ ..+.|++|+.++..+.+..
T Consensus 137 ~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 579999999999999999999 99 6789999999988887764
No 197
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=6.4e-11 Score=100.15 Aligned_cols=133 Identities=19% Similarity=0.318 Sum_probs=91.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCce-------------------------EEEechhhc---------------
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANF-------------------------LKVVSSAII--------------- 103 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~-------------------------~~v~~~~~~--------------- 103 (241)
+-++.+||+||+|+||+++++.+|+.+.+.- ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4467899999999999999999998884421 111110000
Q ss_pred ---cc-----ccchHHHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCC
Q 026258 104 ---DK-----YIGESARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK 171 (241)
Q Consensus 104 ---~~-----~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 171 (241)
+. ...-....++.+...+ ......|++||++|.+ .....+.+...++ .+.++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE-----EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE-----EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc-----CCCcC
Confidence 00 0000112233333322 2234569999999999 6666677766666 34458
Q ss_pred eEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHh
Q 026258 172 VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIH 215 (241)
Q Consensus 172 ~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~ 215 (241)
+.+|++|++++.+.+.++| |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 99 77999999999988888753
No 198
>PRK08116 hypothetical protein; Validated
Probab=99.31 E-value=3e-11 Score=99.39 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHH-
Q 026258 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESA- 111 (241)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~- 111 (241)
++..++..+.+++..+ .... ..+.+++|+|++|||||+|+.++++.+ +.+++.++...+.........
T Consensus 92 ~~~~a~~~a~~y~~~~-------~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~ 163 (268)
T PRK08116 92 GSEKAYKIARKYVKKF-------EEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKS 163 (268)
T ss_pred HHHHHHHHHHHHHHHH-------Hhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 3344555566665432 1111 234579999999999999999999987 677888887776543211110
Q ss_pred ---HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CC----
Q 026258 112 ---RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-DV---- 183 (241)
Q Consensus 112 ---~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~-~~---- 183 (241)
.....++.. ....++|+|||++..- .....+..+..+++.... .+..+|+|||.+ .+
T Consensus 164 ~~~~~~~~~~~~--l~~~dlLviDDlg~e~---------~t~~~~~~l~~iin~r~~----~~~~~IiTsN~~~~eL~~~ 228 (268)
T PRK08116 164 SGKEDENEIIRS--LVNADLLILDDLGAER---------DTEWAREKVYNIIDSRYR----KGLPTIVTTNLSLEELKNQ 228 (268)
T ss_pred cccccHHHHHHH--hcCCCEEEEecccCCC---------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHH
Confidence 111122222 2345799999985431 145566778888876532 145588888865 23
Q ss_pred CChhccCCCCc---ceEEEcCCCCH
Q 026258 184 LDPALLRPGRL---DRKIEIPLPNE 205 (241)
Q Consensus 184 l~~~l~~~~r~---~~~i~l~~p~~ 205 (241)
++..+.+ |+ ...+.+..++.
T Consensus 229 ~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 229 YGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HhHHHHH--HHHHcCEEEEeeCcCh
Confidence 4556666 64 33466666664
No 199
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.31 E-value=1.3e-11 Score=88.72 Aligned_cols=111 Identities=26% Similarity=0.375 Sum_probs=61.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc--cccc----hHHHHHHHHHHHHHh-CCCeEEEEcCcccccCC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID--KYIG----ESARLIREMFGYARD-HQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~--~~~~----~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~ 140 (241)
|+||+|+||+|||++++++|+.++..|.++.+.-... ...| .... ..|...+. --..|+++||+++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 6899999999999999999999999999887642211 0000 0000 00000000 00249999999998
Q ss_pred CCCCCCCccHHHHHHHHHHHHHhcC------CCCCCCeEEEEEeCCCC-----CCChhccCCCCc
Q 026258 141 RFSEGTSADREIQRTLMELLNQLDG------FDQLGKVKMIMATNRPD-----VLDPALLRPGRL 194 (241)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~ll~~~~~------~~~~~~~~vI~tt~~~~-----~l~~~l~~~~r~ 194 (241)
.+..|..+++.+.+..- +.-...+.||+|.|..+ .+++++.+ ||
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 88899999999987532 11222577777777654 58888888 77
No 200
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.30 E-value=4.3e-11 Score=103.52 Aligned_cols=144 Identities=24% Similarity=0.352 Sum_probs=87.2
Q ss_pred cccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------eEEEec----
Q 026258 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------FLKVVS---- 99 (241)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-------~~~v~~---- 99 (241)
++++.+.++..+.+...+. .+.+++|+||||||||++++.+|..+... ++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5667777777777777663 35689999999999999999999887432 122211
Q ss_pred hhhcccc-cch-----HHHHHHHHHHHHHh--CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh--------
Q 026258 100 SAIIDKY-IGE-----SARLIREMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL-------- 163 (241)
Q Consensus 100 ~~~~~~~-~~~-----~~~~~~~~f~~~~~--~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~-------- 163 (241)
.+++... ++. ....+.+....+.. ..|.+|+|||+++.- -......+..+++.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC----------HHHhhhhhhhhccccccccccce
Confidence 1221111 110 01123334444544 347899999998872 122223333333311
Q ss_pred ---------cCCCCCCCeEEEEEeCCCC----CCChhccCCCCcceEEEcCC
Q 026258 164 ---------DGFDQLGKVKMIMATNRPD----VLDPALLRPGRLDRKIEIPL 202 (241)
Q Consensus 164 ---------~~~~~~~~~~vI~tt~~~~----~l~~~l~~~~r~~~~i~l~~ 202 (241)
+.+....++.+|+|+|..+ .++.+++| ||.. +++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 1123335899999999876 68999999 9944 56644
No 201
>PRK12377 putative replication protein; Provisional
Probab=99.28 E-value=6.4e-11 Score=96.03 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=80.5
Q ss_pred CCCcccccc----chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 27 GNVSYSAVG----GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 27 ~~~~~~~l~----g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
...+|++.. |+..++..+..++..+ . ....+++|+|+||||||+|+.++++.+ +..++.+..
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~----------~-~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADEL----------M-TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHH----------H-hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 344666654 4444556666665433 1 223689999999999999999999988 566777777
Q ss_pred hhhcccccchHHH--HHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 100 SAIIDKYIGESAR--LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 100 ~~~~~~~~~~~~~--~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
.++.......... .....+.. ....++|+|||++.... +...+..+..+++.... +...+|+|
T Consensus 138 ~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~~~---------s~~~~~~l~~ii~~R~~----~~~ptiit 202 (248)
T PRK12377 138 PDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQRE---------TKNEQVVLNQIIDRRTA----SMRSVGML 202 (248)
T ss_pred HHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCCCC---------CHHHHHHHHHHHHHHHh----cCCCEEEE
Confidence 6665432211100 01122222 24568999999966521 34567788888886532 13457888
Q ss_pred eCCC
Q 026258 178 TNRP 181 (241)
Q Consensus 178 t~~~ 181 (241)
||..
T Consensus 203 SNl~ 206 (248)
T PRK12377 203 TNLN 206 (248)
T ss_pred cCCC
Confidence 8864
No 202
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.27 E-value=6.4e-11 Score=107.40 Aligned_cols=137 Identities=23% Similarity=0.373 Sum_probs=93.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEechhhcccccchHH--HHHHH-HH----HHHHhCCCeEEEEcCcccc
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAIIDKYIGESA--RLIRE-MF----GYARDHQPCIIFMDEIDAI 137 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~~~~~~~~~~~~--~~~~~-~f----~~~~~~~~~vl~lDe~d~l 137 (241)
.+++|.|++|||||+++++++..+.. +|+.+..........+... ..+.. .+ +.......++||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 48999999999999999999998754 5777775333333333321 00100 00 0111234579999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC---CCChhccCCCCcceEEEcC-CCCH
Q 026258 138 GGRRFSEGTSADREIQRTLMELLNQLD------GF--DQLGKVKMIMATNRPD---VLDPALLRPGRLDRKIEIP-LPNE 205 (241)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vI~tt~~~~---~l~~~l~~~~r~~~~i~l~-~p~~ 205 (241)
++..+..+.+.+++-. +. .....+++|+|+|..+ .+++.+.+ ||...+.+. .|+.
T Consensus 97 -----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 -----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred -----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 8888999988887532 11 1113688888887654 68888988 998887774 5677
Q ss_pred HHHHHHHHHhH
Q 026258 206 QSRMEILKIHA 216 (241)
Q Consensus 206 ~~r~~il~~~~ 216 (241)
++|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 88999998765
No 203
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.2e-10 Score=98.18 Aligned_cols=132 Identities=19% Similarity=0.359 Sum_probs=91.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------ceEEEechhh---cccc-cchHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA-------------------------NFLKVVSSAI---IDKY-IGESARLI 114 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~-------------------------~~~~v~~~~~---~~~~-~~~~~~~~ 114 (241)
+-++.++|+||+|+|||++++.+|+.+.+ .++.+....- .+.. ..-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44567999999999999999999988732 1333332110 0000 00012333
Q ss_pred HHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccC
Q 026258 115 REMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR 190 (241)
Q Consensus 115 ~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~ 190 (241)
+.+...+. .....|+++|+++.+ +...++.+...+++.. .++.+|++|++++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~-----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP-----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc-----CCCEEEEEeCChHhChHHHHH
Confidence 44443333 244569999999999 8888888888887642 257788899999999999999
Q ss_pred CCCcceEEEcCCCCHHHHHHHHHH
Q 026258 191 PGRLDRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 191 ~~r~~~~i~l~~p~~~~r~~il~~ 214 (241)
|+ ..+.|++|+.++..+.+..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 88 6789999999888777654
No 204
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.26 E-value=3.1e-11 Score=106.97 Aligned_cols=151 Identities=21% Similarity=0.321 Sum_probs=94.2
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhhccc
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDK 105 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~~~~ 105 (241)
..+|+++.|++..++.+.-.+ ..+.+++|.||||||||+++++++..+... -..+....+.+.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 348999999999988776554 345789999999999999999999754211 001111111000
Q ss_pred ------------------ccchHHHHH-----HHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 106 ------------------YIGESARLI-----REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 106 ------------------~~~~~~~~~-----~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
.-......+ ...-+.......++|||||++.+ +...+..+.+.++.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~-----------~~~~~~~L~~~LE~ 321 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEF-----------KRSVLDALREPIED 321 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhC-----------CHHHHHHHHHHHHc
Confidence 000000000 00011223345689999999998 77888888888764
Q ss_pred hc--------CCCCCCCeEEEEEeCCC------C-----------------CCChhccCCCCcceEEEcCCCCHH
Q 026258 163 LD--------GFDQLGKVKMIMATNRP------D-----------------VLDPALLRPGRLDRKIEIPLPNEQ 206 (241)
Q Consensus 163 ~~--------~~~~~~~~~vI~tt~~~------~-----------------~l~~~l~~~~r~~~~i~l~~p~~~ 206 (241)
-. ......++++|+++|.- . .+..++++ ||+..+.++.++.+
T Consensus 322 ~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 322 GSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred CcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 21 01112378999999852 1 36677777 99999999876443
No 205
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.26 E-value=6.4e-11 Score=104.59 Aligned_cols=180 Identities=24% Similarity=0.348 Sum_probs=116.7
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY 106 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~ 106 (241)
.+..++|.+...+.+.+.+... .....+++|.|++||||+++++++.... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 4556788887777777766421 1345679999999999999999998766 4689999999874221
Q ss_pred cchHHHHHHHHHHH---------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-----
Q 026258 107 IGESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF----- 166 (241)
Q Consensus 107 ~~~~~~~~~~~f~~---------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----- 166 (241)
. -..+|+. ......++|||||++.+ +...|..+.++++.....
T Consensus 206 ~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 206 L------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred H------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCC
Confidence 1 1123332 11244679999999999 788899999888753210
Q ss_pred -CCCCCeEEEEEeCCC-------CCCChhccCCCCcceEEEcCCCCHHHHHH----HHHHhHcCc----cCC-CCCCHHH
Q 026258 167 -DQLGKVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRME----ILKIHAAGI----AKH-GEIDYEA 229 (241)
Q Consensus 167 -~~~~~~~vI~tt~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~----il~~~~~~~----~~~-~~~~~~~ 229 (241)
....++++|++|+.. ..+.+.+.. |+. .+.+..|...+|.+ +.+.++.+. ... ..++.+.
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 345 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDA 345 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 011267899998754 234444443 442 24444555555543 444444332 222 3678999
Q ss_pred HHHHhhhccCC
Q 026258 230 VVKLAEVSRRG 240 (241)
Q Consensus 230 l~~~~~~~~~~ 240 (241)
+..+.++.|+|
T Consensus 346 ~~~L~~~~wpg 356 (445)
T TIGR02915 346 LRALEAHAWPG 356 (445)
T ss_pred HHHHHhCCCCC
Confidence 99999998876
No 206
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.25 E-value=5.2e-11 Score=106.54 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=101.2
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEE----echhhcccccc
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV----VSSAIIDKYIG 108 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v----~~~~~~~~~~~ 108 (241)
.+.|.+.++..+.-.+..-... ..-....+....++||+|+||+|||++++++++......+.. ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 4677777777776665431100 000001122234899999999999999999998775432221 11111110000
Q ss_pred h-HHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc-CC-------CCCCCeEEEEEeC
Q 026258 109 E-SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GF-------DQLGKVKMIMATN 179 (241)
Q Consensus 109 ~-~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~-------~~~~~~~vI~tt~ 179 (241)
. ........-+.......++++|||++.+ +...+..+.+.++.-. .+ .-+.++.+|+|+|
T Consensus 283 ~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~N 351 (509)
T smart00350 283 DPETREFTLEGGALVLADNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAAN 351 (509)
T ss_pred ccCcceEEecCccEEecCCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeC
Confidence 0 0000000001112244579999999999 7778888888776421 00 1123688999998
Q ss_pred CCC-------------CCChhccCCCCcceEE-EcCCCCHHHHHHHHHHhH
Q 026258 180 RPD-------------VLDPALLRPGRLDRKI-EIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 180 ~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~~~r~~il~~~~ 216 (241)
..+ .+++++.+ ||+..+ -++.|+.+...+|.+..+
T Consensus 352 P~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 352 PIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 652 58899999 998755 458899999999988754
No 207
>PRK08181 transposase; Validated
Probab=99.25 E-value=1e-10 Score=95.92 Aligned_cols=134 Identities=19% Similarity=0.313 Sum_probs=82.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchH-HHHHHHHHHHHHhCCCeEEEEcCcccccCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~ 140 (241)
.+.+++|+||+|||||+|+.++++++ +..++++...++........ .......+.. ...+++|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEeccccccC-
Confidence 45689999999999999999999766 66777787777654331111 0111222222 23567999999987732
Q ss_pred CCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC-C---------CChhccCCCCc---ceEEEcCCCCHHH
Q 026258 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD-V---------LDPALLRPGRL---DRKIEIPLPNEQS 207 (241)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~-~---------l~~~l~~~~r~---~~~i~l~~p~~~~ 207 (241)
+...+..+.++++.... +..+|+|||.+. + +..++.+ |+ ...+.+.-.|...
T Consensus 182 --------~~~~~~~Lf~lin~R~~-----~~s~IiTSN~~~~~w~~~~~D~~~a~aild--RL~h~~~~i~~~g~s~R~ 246 (269)
T PRK08181 182 --------DQAETSVLFELISARYE-----RRSILITANQPFGEWNRVFPDPAMTLAAVD--RLVHHATIFEMNVESYRR 246 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh-----CCCEEEEcCCCHHHHHHhcCCccchhhHHH--hhhcCceEEecCCccchh
Confidence 34556788888886532 235888888652 1 2223444 54 2356777666655
Q ss_pred HHHHHHHhH
Q 026258 208 RMEILKIHA 216 (241)
Q Consensus 208 r~~il~~~~ 216 (241)
+...-..+.
T Consensus 247 ~~~~~~~~~ 255 (269)
T PRK08181 247 RTALERKRG 255 (269)
T ss_pred HHHHhcccC
Confidence 444433333
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.22 E-value=2.4e-11 Score=90.21 Aligned_cols=107 Identities=30% Similarity=0.509 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---ceEEEechhhcccccchHH
Q 026258 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVSSAIIDKYIGESA 111 (241)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~---~~~~v~~~~~~~~~~~~~~ 111 (241)
+|.....+++.+.+... . ....+++|+|++||||+++|+++...... +++.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~----------a-~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL----------A-KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH----------H-CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH----------h-CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 35566667776666532 1 44578999999999999999999987743 55556665532
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 112 ~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
..++.. ...+.|||+|+|.+ +...|..+..++...+ ..++++|+++..+
T Consensus 62 ---~~~l~~---a~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---AELLEQ---AKGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQD 110 (138)
T ss_dssp ---HHHHHH---CTTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-
T ss_pred ---HHHHHH---cCCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCC
Confidence 233333 36689999999999 8888999988888642 2478999988653
No 209
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.22 E-value=1.2e-10 Score=98.14 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=77.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchH---HHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES---ARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
..+++|+|++|+|||+|+.++|+++ +..++++....+........ .......+... ...++|+|||++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999988 66788888777654321110 00111112222 3457999999977632
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CC----CChhccCCCCcce---EEEcCCCCHH
Q 026258 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-DV----LDPALLRPGRLDR---KIEIPLPNEQ 206 (241)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~-~~----l~~~l~~~~r~~~---~i~l~~p~~~ 206 (241)
.+..+..+..+++..-.. +..+|+|||.+ .+ +++.+.+ |+.. .+.+...+..
T Consensus 261 ---------t~~~~~~Lf~iin~R~~~----~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~R 320 (329)
T PRK06835 261 ---------TEFSKSELFNLINKRLLR----QKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDIR 320 (329)
T ss_pred ---------CHHHHHHHHHHHHHHHHC----CCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcChh
Confidence 455667788888865321 34588888864 22 4456666 5532 4555544433
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2e-10 Score=99.52 Aligned_cols=143 Identities=27% Similarity=0.334 Sum_probs=98.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc-ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~ 143 (241)
+-.++||.||||||||+||-.+|...+.||+.+-.++..-. .....-..+++.|..++...-++|++|++++|.....
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp- 615 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP- 615 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc-
Confidence 34569999999999999999999999999999876654322 2222335678899999999999999999999975542
Q ss_pred CCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh--hccCCCCcceEEEcCCCCH-HHHHHHHH
Q 026258 144 EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP--ALLRPGRLDRKIEIPLPNE-QSRMEILK 213 (241)
Q Consensus 144 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~--~l~~~~r~~~~i~l~~p~~-~~r~~il~ 213 (241)
...+.....+..++-.++..++.++-.+|++|.+...+-. .+.. -|+..+.+|..+. ++..+++.
T Consensus 616 ---IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 616 ---IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ---cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 1122233344445555666677776666666654332111 1333 5777888887755 66666665
No 211
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.20 E-value=2.6e-10 Score=103.72 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=45.5
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
..|..-+++++|+++.++.+..++.. +.+++|+|+||||||++++++++.++..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 44566788999999999999888752 3489999999999999999999888544
No 212
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=6.9e-11 Score=94.05 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=69.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE-------------------------------------------
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK------------------------------------------- 96 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~------------------------------------------- 96 (241)
++.+..+..+.|.||+|||||||++.+|......--.
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 5566788899999999999999999999654111000
Q ss_pred ---------------EechhhcccccchHHHHHHHHHHH--HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHH
Q 026258 97 ---------------VVSSAIIDKYIGESARLIREMFGY--ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 159 (241)
Q Consensus 97 ---------------v~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~l 159 (241)
+...++.+.++.+.+..+++..+. +....|.+|++||-..- .+..+...+...
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA----------LDalTR~~lq~~ 172 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA----------LDALTREELQDE 172 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch----------hhHHHHHHHHHH
Confidence 111223334455555555555444 44588999999994322 255555555554
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCC
Q 026258 160 LNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 160 l~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+..+. ...+..+++.||+.+
T Consensus 173 l~~lw---~~~~~TvllVTHdi~ 192 (248)
T COG1116 173 LLRLW---EETRKTVLLVTHDVD 192 (248)
T ss_pred HHHHH---HhhCCEEEEEeCCHH
Confidence 44442 223678999999854
No 213
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.4e-11 Score=99.20 Aligned_cols=132 Identities=23% Similarity=0.379 Sum_probs=88.9
Q ss_pred cccc-ccchHHHHHHHHHHhhcccCChHHHHh---cCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc-c
Q 026258 30 SYSA-VGGLSDQIRELRESIELPLMNPELFLR---VGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII-D 104 (241)
Q Consensus 30 ~~~~-l~g~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~-~ 104 (241)
.+++ ++|++.+|+.|--++.+.+++-..... ..+ ...++|+.||+|||||.|++.+|+.++.||...++..+- .
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL-~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVEL-SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceee-eeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 3444 789998888776555443322111100 111 236799999999999999999999999999999887764 3
Q ss_pred cccchH-HHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCC---CCCccHHHHHHHHHHHHH
Q 026258 105 KYIGES-ARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSE---GTSADREIQRTLMELLNQ 162 (241)
Q Consensus 105 ~~~~~~-~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~---~~~~~~~~~~~l~~ll~~ 162 (241)
.|+|+. +..+.+++..+ .....+++||||+|.+..+..++ .+-+.+..|.++..+++.
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 556653 33334444332 23456899999999998776543 234456678888888874
No 214
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.18 E-value=1.3e-09 Score=88.49 Aligned_cols=88 Identities=33% Similarity=0.403 Sum_probs=57.5
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------------CCCCChhccCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR-------------PDVLDPALLRPG 192 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~-------------~~~l~~~l~~~~ 192 (241)
|+||||||++.| +-+-..-+... +++- -.-.+|+++|. |+.+++.+.+
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~ka---lES~---iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKA---LESP---IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHH---hcCC---CCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 789999999888 44333333333 3221 13457777663 4567777877
Q ss_pred CcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 193 r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
|+ ..|..-+++.++.++|++.+.+...+ .++.+.+..+++
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l--~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGL--QVEEEALDLLAE 397 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcc--eecHHHHHHHHh
Confidence 77 55677778888888999988877655 556666666555
No 215
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.17 E-value=2.2e-10 Score=101.91 Aligned_cols=181 Identities=22% Similarity=0.304 Sum_probs=119.0
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY 106 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~ 106 (241)
++.+++|.....+.+.+.+... .....+++|.|++||||+++++++.... +.+|+.++|..+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~- 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD- 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH-
Confidence 4567888888777777766421 1345679999999999999999999876 468999999877321
Q ss_pred cchHHHHHHHHHHHH---------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC-----
Q 026258 107 IGESARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF----- 166 (241)
Q Consensus 107 ~~~~~~~~~~~f~~~---------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----- 166 (241)
..-..+|++. .....+.|||||++.+ ....|..+..+++...-.
T Consensus 204 -----~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 204 -----LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred -----HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 1112333322 1234578999999999 788888888888753211
Q ss_pred -CCCCCeEEEEEeCCC-------CCCChhccCCCCc-ceEEEcCCCCH--HHHHHHHHHhHcCcc----CC-CCCCHHHH
Q 026258 167 -DQLGKVKMIMATNRP-------DVLDPALLRPGRL-DRKIEIPLPNE--QSRMEILKIHAAGIA----KH-GEIDYEAV 230 (241)
Q Consensus 167 -~~~~~~~vI~tt~~~-------~~l~~~l~~~~r~-~~~i~l~~p~~--~~r~~il~~~~~~~~----~~-~~~~~~~l 230 (241)
...-++++|++|+.. ..+.+.+.. |+ ...|.+|+... +....+++.++++.. .. ..++.+.+
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 011257899998753 134455555 55 23455555432 344456665554421 11 25788999
Q ss_pred HHHhhhccCC
Q 026258 231 VKLAEVSRRG 240 (241)
Q Consensus 231 ~~~~~~~~~~ 240 (241)
..+.++.|+|
T Consensus 346 ~~L~~~~wpg 355 (469)
T PRK10923 346 AALTRLAWPG 355 (469)
T ss_pred HHHHhCCCCC
Confidence 9999998876
No 216
>PF13173 AAA_14: AAA domain
Probab=99.17 E-value=4.5e-10 Score=82.28 Aligned_cols=118 Identities=25% Similarity=0.336 Sum_probs=74.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNID--ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE 144 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~--~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~ 144 (241)
..++|.||+||||||+++.+++.+. ..++.+++...........+ +...+.......+.+|+|||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 4689999999999999999998876 67777776655432111111 222222222235679999999888
Q ss_pred CCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----ChhccCCCCcceEEEcCCCCHHH
Q 026258 145 GTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL----DPALLRPGRLDRKIEIPLPNEQS 207 (241)
Q Consensus 145 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l----~~~l~~~~r~~~~i~l~~p~~~~ 207 (241)
+.....+..+.+.. +++.+|+|++....+ ...+.. |+ ..+.+.+++.++
T Consensus 74 -----~~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l~g--r~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESLAG--RV-IEIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccCCC--eE-EEEEECCCCHHH
Confidence 23445555555532 257788887765433 233333 65 467888877665
No 217
>PRK06526 transposase; Provisional
Probab=99.13 E-value=2.7e-10 Score=92.95 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=64.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchH-HHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
..+.+++|+||||||||+|+.+++.++ +..+..+....+........ .......+. ....+++|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~--~l~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV--KLGRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH--HhccCCEEEEcccccCCC
Confidence 345789999999999999999998876 55565555555443221110 011111111 124568999999987722
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
+...+..+..+++.... +..+|+|||.+
T Consensus 174 ---------~~~~~~~L~~li~~r~~-----~~s~IitSn~~ 201 (254)
T PRK06526 174 ---------EPEAANLFFQLVSSRYE-----RASLIVTSNKP 201 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 45556678888875432 23488888875
No 218
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=5.9e-09 Score=85.92 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=86.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-ceEEEe---c----hh----hccc----ccch-HH---HHHHHHH-HHHHhC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDA-NFLKVV---S----SA----IIDK----YIGE-SA---RLIREMF-GYARDH 124 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~-~~~~v~---~----~~----~~~~----~~~~-~~---~~~~~~f-~~~~~~ 124 (241)
...++|+||+|+||||+++.++..+.. .+.... + .. +... ..+. .. ..+...+ ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346899999999999999999998752 222111 0 00 0000 0000 01 1122211 222345
Q ss_pred CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC--CCC----ChhccCCCCcceEE
Q 026258 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP--DVL----DPALLRPGRLDRKI 198 (241)
Q Consensus 125 ~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~--~~l----~~~l~~~~r~~~~i 198 (241)
.+.+|+|||++.+ +......+..+.+. .. .....+.+|++.... +.+ ...+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l-----------~~~~~~~l~~l~~~-~~-~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNL-----------TPELLEELRMLSNF-QT-DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccC-----------CHHHHHHHHHHhCc-cc-CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 5679999999988 44444444433322 11 111234445554321 111 123545 777788
Q ss_pred EcCCCCHHHHHHHHHHhHcCccCC--CCCCHHHHHHHhhhc
Q 026258 199 EIPLPNEQSRMEILKIHAAGIAKH--GEIDYEAVVKLAEVS 237 (241)
Q Consensus 199 ~l~~p~~~~r~~il~~~~~~~~~~--~~~~~~~l~~~~~~~ 237 (241)
.+++.+.++..+++...++..... ..++.+.+..+.+.+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s 228 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFS 228 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc
Confidence 999999999999999888765432 235556665555544
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.13 E-value=1.1e-09 Score=88.54 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=79.4
Q ss_pred CCCcccccc----chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 27 GNVSYSAVG----GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 27 ~~~~~~~l~----g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
...+|++.. ++..++..+.+++..+ . ....+++|+|++|||||+|+.++++.+ +..++.+..
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~----------~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEF----------D-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhh----------c-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 455777754 2233445555544321 1 113489999999999999999999988 667778877
Q ss_pred hhhcccccchH---HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 026258 100 SAIIDKYIGES---ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (241)
Q Consensus 100 ~~~~~~~~~~~---~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 176 (241)
.++........ ......++... ...++|+|||++... .+......+..+++..-. ....+|+
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry~----~~~~tii 200 (244)
T PRK07952 136 ADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRSS----SKRPTGM 200 (244)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHHh----CCCCEEE
Confidence 77654322111 01112233322 356899999997762 134445677788876422 1456888
Q ss_pred EeCCC
Q 026258 177 ATNRP 181 (241)
Q Consensus 177 tt~~~ 181 (241)
|||..
T Consensus 201 tSNl~ 205 (244)
T PRK07952 201 LTNSN 205 (244)
T ss_pred eCCCC
Confidence 88864
No 220
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=4.7e-10 Score=90.01 Aligned_cols=161 Identities=20% Similarity=0.346 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---ceEEEechhhccc-----
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVSSAIIDK----- 105 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~---~~~~v~~~~~~~~----- 105 (241)
.+|.++..++|.+++.. .....++|+||+|+|||+|++.+...+.. ..+.+........
T Consensus 1 F~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 36889999999888753 34578999999999999999999988832 1111111000000
Q ss_pred ------------------------------ccchHHHHHHHHHHHHHhCC-CeEEEEcCccccc-CCCCCCCCCccHHHH
Q 026258 106 ------------------------------YIGESARLIREMFGYARDHQ-PCIIFMDEIDAIG-GRRFSEGTSADREIQ 153 (241)
Q Consensus 106 ------------------------------~~~~~~~~~~~~f~~~~~~~-~~vl~lDe~d~l~-~~~~~~~~~~~~~~~ 153 (241)
........+..++....... ..+|+|||++.+. .. .......
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~------~~~~~~~ 141 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS------EEDKDFL 141 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT------TTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc------cchHHHH
Confidence 00112233444444444432 3799999999995 11 1234555
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCC------CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc
Q 026258 154 RTLMELLNQLDGFDQLGKVKMIMATNRPD------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 154 ~~l~~ll~~~~~~~~~~~~~vI~tt~~~~------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~ 219 (241)
..+..+++.. ....++.+|++++... .-...+.. |+.. +.+++.+.++..++++......
T Consensus 142 ~~l~~~~~~~---~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 142 KSLRSLLDSL---LSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp HHHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhc---cccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 5666666542 2234677777765431 11223334 6655 9999999999999999987766
No 221
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.11 E-value=3e-10 Score=100.47 Aligned_cols=150 Identities=27% Similarity=0.323 Sum_probs=94.5
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce--EEEechhhcc--
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIID-- 104 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~--~~v~~~~~~~-- 104 (241)
.+|.++.|+..+++.+.-. ...+.+++|.|+||||||++++.++..+...- ..+++..+.+
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 5888899988877776322 35567999999999999999999997662210 1111111110
Q ss_pred ----------------cccchHHHHH-----HHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 105 ----------------KYIGESARLI-----REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 105 ----------------~~~~~~~~~~-----~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
..-......+ ...-+.......++|||||++.+ +...+..+.+.++.-
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~-----------~~~~~~~L~~~LE~g 321 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF-----------ERRTLDALREPIESG 321 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhC-----------CHHHHHHHHHHHHcC
Confidence 0000000000 00112233345589999999888 777888888887643
Q ss_pred cC--------CCCCCCeEEEEEeCCCC---------------------CCChhccCCCCcceEEEcCCCCHH
Q 026258 164 DG--------FDQLGKVKMIMATNRPD---------------------VLDPALLRPGRLDRKIEIPLPNEQ 206 (241)
Q Consensus 164 ~~--------~~~~~~~~vI~tt~~~~---------------------~l~~~l~~~~r~~~~i~l~~p~~~ 206 (241)
.- .....++.+|+|+|... .++.++.+ ||+..+.+++|+.+
T Consensus 322 ~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 322 QIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 21 01123689999998642 36667888 99999999988654
No 222
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.11 E-value=3.2e-09 Score=94.54 Aligned_cols=202 Identities=15% Similarity=0.205 Sum_probs=115.5
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
+..|-....|.+.++|..-.+.+++++.++...+ .+......++|.||+||||||+++.+|++++..+.+-.
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 3455567899999999999999999999997531 12233457899999999999999999999988777643
Q ss_pred chhhc-------ccccc---hH---HHHHHHHHHHH-----H-----------hCCCeEEEEcCcccccCCCCCCCCCcc
Q 026258 99 SSAII-------DKYIG---ES---ARLIREMFGYA-----R-----------DHQPCIIFMDEIDAIGGRRFSEGTSAD 149 (241)
Q Consensus 99 ~~~~~-------~~~~~---~~---~~~~~~~f~~~-----~-----------~~~~~vl~lDe~d~l~~~~~~~~~~~~ 149 (241)
.+... ..+.+ .. .... ..|... + ...+.||+|||+=-++... .
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~ 149 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------T 149 (519)
T ss_pred CCCCccccccccccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------H
Confidence 22110 00000 00 0111 112111 1 1346799999986553221 2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEe-CCCC--------------CCChhccCCCCcceEEEcCCCCHHHHHHHHHH
Q 026258 150 REIQRTLMELLNQLDGFDQLGKVKMIMAT-NRPD--------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 150 ~~~~~~l~~ll~~~~~~~~~~~~~vI~tt-~~~~--------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~ 214 (241)
......+.+++.. .....+++|++- ...+ -+++.+....++ ..|.|.+-........|..
T Consensus 150 ~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 150 SRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHH
Confidence 3344444444432 111155555551 1110 134444442233 5789988888777777776
Q ss_pred hHcCc-----cCCCCCC-HHHHHHHhhhccCCC
Q 026258 215 HAAGI-----AKHGEID-YEAVVKLAEVSRRGL 241 (241)
Q Consensus 215 ~~~~~-----~~~~~~~-~~~l~~~~~~~~~~~ 241 (241)
.+... ......+ .+.|..+++.+..+|
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDI 257 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESSNGDI 257 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhcCchH
Confidence 65543 1111222 344777776665543
No 223
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.11 E-value=1e-09 Score=97.32 Aligned_cols=179 Identities=26% Similarity=0.321 Sum_probs=112.6
Q ss_pred cccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccccc
Q 026258 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI 107 (241)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~ 107 (241)
+..++|.+.....+.+.+... .....++++.|++||||+++++++.... +.+++.++|..+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~- 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL- 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH-
Confidence 445667666666665555321 1345679999999999999999998765 5789999998774211
Q ss_pred chHHHHHHHHHHH---------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------
Q 026258 108 GESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------ 166 (241)
Q Consensus 108 ~~~~~~~~~~f~~---------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------ 166 (241)
.-..+|+. ......++|||||++.+ +...|..+..+++.....
T Consensus 210 -----~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 210 -----LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred -----HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 11123332 12234579999999999 788888888888753210
Q ss_pred CCCCCeEEEEEeCCCC-------CCChhccCCCCcceEEEcCCCCHHHHH----HHHHHhHcCcc----CC-CCCCHHHH
Q 026258 167 DQLGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGIA----KH-GEIDYEAV 230 (241)
Q Consensus 167 ~~~~~~~vI~tt~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~----~il~~~~~~~~----~~-~~~~~~~l 230 (241)
....++++|++|+..- .+.+.+.. |+. .+.+..|...+|. .+.+.++.+.. .. ..++.+.+
T Consensus 274 ~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 350 (457)
T PRK11361 274 TIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350 (457)
T ss_pred eeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 0112588999987541 23333433 442 3445555555444 34444444432 11 35788999
Q ss_pred HHHhhhccCC
Q 026258 231 VKLAEVSRRG 240 (241)
Q Consensus 231 ~~~~~~~~~~ 240 (241)
..+..+.|+|
T Consensus 351 ~~L~~~~wpg 360 (457)
T PRK11361 351 SLLTAWSWPG 360 (457)
T ss_pred HHHHcCCCCC
Confidence 9999888876
No 224
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.09 E-value=1.8e-09 Score=98.24 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=44.8
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
..|+..|++++|++++++.|...+.. +.+++|+|||||||||+++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 45678999999999999999887742 34899999999999999999997663
No 225
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.08 E-value=2.6e-09 Score=95.47 Aligned_cols=164 Identities=16% Similarity=0.250 Sum_probs=111.1
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEEechhh
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVSSAI 102 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v~~~~~ 102 (241)
.|.+.+.....+..++..++... ..+..++|.|-||||||..++.+...+ ...+++++.-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 46788999999998887654220 223479999999999999999999866 345777776555
Q ss_pred cccc----------cc------hHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC
Q 026258 103 IDKY----------IG------ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (241)
Q Consensus 103 ~~~~----------~~------~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 165 (241)
.+.. .+ ..-..+...|...+. .++.|++|||+|.|. ...|..|+.++++..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lv-----------tr~QdVlYn~fdWpt- 536 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILV-----------TRSQDVLYNIFDWPT- 536 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHh-----------cccHHHHHHHhcCCc-
Confidence 4311 00 011222223331111 347799999999994 345788999988653
Q ss_pred CCCCCCeEEEEEeCCCC----CCChhccCCCCcce-EEEcCCCCHHHHHHHHHHhHcCc
Q 026258 166 FDQLGKVKMIMATNRPD----VLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 166 ~~~~~~~~vI~tt~~~~----~l~~~l~~~~r~~~-~i~l~~p~~~~r~~il~~~~~~~ 219 (241)
..+.+..||+.+|.-+ .+...+.+ |++. .+.|.+++-+|.++|+..++++.
T Consensus 537 -~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 537 -LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred -CCCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcch
Confidence 3344677777776543 23333444 6655 78999999999999999999887
No 226
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=8.4e-09 Score=85.08 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=79.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------eEEEechhhcccccchHHHHHHHHHHHH----Hh
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDAN----------------FLKVVSSAIIDKYIGESARLIREMFGYA----RD 123 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~----------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~ 123 (241)
.-++.++|+||.|+||++++.++|..+-+. +..+...+ .+... ....++.+...+ ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 445679999999999999999999877432 22221100 00000 112223332222 22
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 203 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p 203 (241)
....|++||++|.+ ..+.++.+...+++ +.+++.+|++|++++.+.+.++| |+ ..+.|+++
T Consensus 94 ~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 44579999999999 77777888888874 34589999999999999999999 88 55677654
No 227
>PRK15115 response regulator GlrR; Provisional
Probab=99.07 E-value=1.2e-09 Score=96.39 Aligned_cols=177 Identities=25% Similarity=0.320 Sum_probs=110.6
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccch
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE 109 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~ 109 (241)
.++|.....+++.+.+... ......++|.|++||||+++++++.+.. +.+++.++|..+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~--- 200 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL--- 200 (444)
T ss_pred cccccCHHHHHHHHHHHhh-----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH---
Confidence 3556555555555444321 1334679999999999999999998875 5789999998763211
Q ss_pred HHHHHHHHHHHH---------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------CC
Q 026258 110 SARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQ 168 (241)
Q Consensus 110 ~~~~~~~~f~~~---------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~~ 168 (241)
.-..+|+.. .....+.|||||++.+ +...|..+..+++..... ..
T Consensus 201 ---~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 201 ---LESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ---HHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 111333322 1234579999999999 788888888888753211 01
Q ss_pred CCCeEEEEEeCCCC-------CCChhccCCCCcceEEEcCCCCHHHHH----HHHHHhHcCcc-----CCCCCCHHHHHH
Q 026258 169 LGKVKMIMATNRPD-------VLDPALLRPGRLDRKIEIPLPNEQSRM----EILKIHAAGIA-----KHGEIDYEAVVK 232 (241)
Q Consensus 169 ~~~~~vI~tt~~~~-------~l~~~l~~~~r~~~~i~l~~p~~~~r~----~il~~~~~~~~-----~~~~~~~~~l~~ 232 (241)
..++++|++|+..- .+.+.+.. |+ ..+.+..|...+|. .+++.++++.. ....++.+++..
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (444)
T PRK15115 267 DIDVRIISATHRDLPKAMARGEFREDLYY--RL-NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKR 343 (444)
T ss_pred eeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh-ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 12678999887531 12222322 33 23455566666664 34455544421 112578999999
Q ss_pred HhhhccCC
Q 026258 233 LAEVSRRG 240 (241)
Q Consensus 233 ~~~~~~~~ 240 (241)
+..+.|+|
T Consensus 344 L~~~~Wpg 351 (444)
T PRK15115 344 LMTASWPG 351 (444)
T ss_pred HHhCCCCC
Confidence 99999876
No 228
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.1e-11 Score=103.77 Aligned_cols=48 Identities=33% Similarity=0.520 Sum_probs=42.1
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+|.||+|++..|+.+.-+... ++|++++||||||||.+++.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 45899999999999999888753 5789999999999999999997554
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.6e-09 Score=88.51 Aligned_cols=102 Identities=22% Similarity=0.310 Sum_probs=65.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHHH-HHHHHHHHHHhCCCeEEEEcCcccccCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESAR-LIREMFGYARDHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~vl~lDe~d~l~~~ 140 (241)
.+.+++|+|+||+|||+|+-++++++ |..+..+..++++......... .....+... -...++|+|||+...-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~-- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP-- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc--
Confidence 56799999999999999999999988 7788899888887644332221 111111111 2346799999997762
Q ss_pred CCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 141 RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
.+......+.+++...-.. ... ++|+|.+
T Consensus 181 -------~~~~~~~~~~q~I~~r~~~----~~~-~~tsN~~ 209 (254)
T COG1484 181 -------FSQEEADLLFQLISRRYES----RSL-IITSNLS 209 (254)
T ss_pred -------CCHHHHHHHHHHHHHHHhh----ccc-eeecCCC
Confidence 1333445555555543211 222 8888865
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=99.06 E-value=1e-09 Score=89.94 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=65.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccch-HHHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE-SARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
..+.+++|+||+|||||+|+.+++..+ +..+..+.+..+....... ....+...+... ...+++++|||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 556789999999999999999998765 5567777766654322111 111122333322 24568999999977521
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
+......+..+++.... +..+|+|||.+
T Consensus 179 ---------~~~~~~~lf~li~~r~~-----~~s~iiTsn~~ 206 (259)
T PRK09183 179 ---------SQEEANLFFQVIAKRYE-----KGSMILTSNLP 206 (259)
T ss_pred ---------ChHHHHHHHHHHHHHHh-----cCcEEEecCCC
Confidence 33455677777776432 12478888865
No 231
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.04 E-value=1.2e-09 Score=101.33 Aligned_cols=169 Identities=17% Similarity=0.095 Sum_probs=101.3
Q ss_pred cccchHHHHHHHHHHhhcccCChHHH--------HhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CceEEE
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELF--------LRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-------ANFLKV 97 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~--------~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~-------~~~~~v 97 (241)
.|.|.+.+|+.+.-.+..-....... ....++...++||+|+||||||.+++++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 57888888888876664322100000 001233445899999999999999999998653 233444
Q ss_pred echhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc-CC-------CCC
Q 026258 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GF-------DQL 169 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~-------~~~ 169 (241)
++...... .......+..--+.......++++|||++.+ +...+..+.+.++.-. .+ .-+
T Consensus 531 gLTa~~~~-~d~~tG~~~le~GaLvlAdgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ 598 (915)
T PTZ00111 531 GLTASIKF-NESDNGRAMIQPGAVVLANGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIVATLK 598 (915)
T ss_pred cccchhhh-cccccCcccccCCcEEEcCCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcceecC
Confidence 44433210 0000000000001112244579999999999 7778888888886432 01 112
Q ss_pred CCeEEEEEeCCCC-------------CCChhccCCCCcceEE-EcCCCCHHHHHHHHHHh
Q 026258 170 GKVKMIMATNRPD-------------VLDPALLRPGRLDRKI-EIPLPNEQSRMEILKIH 215 (241)
Q Consensus 170 ~~~~vI~tt~~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~~~r~~il~~~ 215 (241)
.+++||+++|... .+++++++ ||+..+ .++.|+.+.-..|-++.
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHH
Confidence 3789999998741 47788999 997754 55888877666654443
No 232
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.9e-09 Score=97.89 Aligned_cols=127 Identities=26% Similarity=0.475 Sum_probs=95.5
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCC---CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc--
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIK---PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID-- 104 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~-- 104 (241)
.|+|+++++..+-+++..+ +.|+. +...++|.||.|+|||-|++++|..+ .-.++.++++.+..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 4889999999999999765 33433 34569999999999999999999888 45689999886321
Q ss_pred -------cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCC------C
Q 026258 105 -------KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG------K 171 (241)
Q Consensus 105 -------~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~------~ 171 (241)
.+.|.... .++...+++...+||++||+|.. +...+..+.++++.-.-....+ +
T Consensus 635 kligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 23333332 25666677888899999999988 8889999999998654322222 7
Q ss_pred eEEEEEeCC
Q 026258 172 VKMIMATNR 180 (241)
Q Consensus 172 ~~vI~tt~~ 180 (241)
++||+|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 888888764
No 233
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.03 E-value=1.6e-09 Score=96.17 Aligned_cols=179 Identities=24% Similarity=0.337 Sum_probs=116.9
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIG 108 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~ 108 (241)
..++|.+...+++.+.+... ......+++.|.+||||+++++++.... +.+++.++|..+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~- 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI- 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH-
Confidence 45777777777776666421 1344679999999999999999998765 56899999988732211
Q ss_pred hHHHHHHHHHHH---------------HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------C
Q 026258 109 ESARLIREMFGY---------------ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------D 167 (241)
Q Consensus 109 ~~~~~~~~~f~~---------------~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~ 167 (241)
-..+|+. ......+.|||||++.+ +...|..+.++++..... .
T Consensus 202 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 202 -----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred -----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCce
Confidence 1122321 11234679999999999 778888888888753210 0
Q ss_pred CCCCeEEEEEeCCCC-------CCChhccCCCCcc-eEEEcCCCC--HHHHHHHHHHhHcCccC-----CCCCCHHHHHH
Q 026258 168 QLGKVKMIMATNRPD-------VLDPALLRPGRLD-RKIEIPLPN--EQSRMEILKIHAAGIAK-----HGEIDYEAVVK 232 (241)
Q Consensus 168 ~~~~~~vI~tt~~~~-------~l~~~l~~~~r~~-~~i~l~~p~--~~~r~~il~~~~~~~~~-----~~~~~~~~l~~ 232 (241)
...++++|++|+..- .+.+.+.. |+. ..|.+|+.. .+....+++.+++.... ...++.+++..
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALER 343 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 112678999887541 33344444 443 356666665 45566666665554321 13578999999
Q ss_pred HhhhccCC
Q 026258 233 LAEVSRRG 240 (241)
Q Consensus 233 ~~~~~~~~ 240 (241)
+.++.|.|
T Consensus 344 L~~~~wpg 351 (463)
T TIGR01818 344 LKQLRWPG 351 (463)
T ss_pred HHhCCCCC
Confidence 99988875
No 234
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=5.9e-09 Score=89.43 Aligned_cols=186 Identities=16% Similarity=0.213 Sum_probs=116.9
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEechhhcc
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSAIID 104 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~~~~~~~ 104 (241)
.-+.+.|.++.++.+.+++... +....+..+++.|-||+|||.++..+...+ ....++++|..+..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 3467999999999999999764 334667889999999999999998777655 22447777765322
Q ss_pred cc----------------cchHHHHHHHHHHHHHhCC-CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC
Q 026258 105 KY----------------IGESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (241)
Q Consensus 105 ~~----------------~~~~~~~~~~~f~~~~~~~-~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 167 (241)
.. .+.....++.+-.+..+.+ +-++++||+|.|+. ..+..++.+++.-. .
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t-----------r~~~vLy~lFewp~--l 285 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT-----------RSQTVLYTLFEWPK--L 285 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh-----------cccceeeeehhccc--C
Confidence 10 0011111122222333333 66999999999952 23455666654322 2
Q ss_pred CCCCeEEEEEeCCCCCCC---hhccC-CCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCC--HHHHHHHhhhc
Q 026258 168 QLGKVKMIMATNRPDVLD---PALLR-PGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID--YEAVVKLAEVS 237 (241)
Q Consensus 168 ~~~~~~vI~tt~~~~~l~---~~l~~-~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~--~~~l~~~~~~~ 237 (241)
.+.++.+|+.+|..+.-+ +.+.. .+.-...+.|++++.++..+|+...+.........+ .+.+|.-....
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 334778888888765222 22222 122345789999999999999999998876543322 34444444333
No 235
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.03 E-value=3.8e-09 Score=88.46 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=64.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHH-HHHHHHHHHHHhCCCeEEEEcCcccccCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESA-RLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~vl~lDe~d~l~~~ 140 (241)
.+.+++|+|++|+|||+|+.++|+++ +..+..+..+.+......... ......+... ...++|+|||++...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCcc--
Confidence 45789999999999999999999998 677777877776543322111 1112223222 346799999996651
Q ss_pred CCCCCCCccHHHH-HHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 141 RFSEGTSADREIQ-RTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 141 ~~~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
.++... ..+..+++..-. .+..+|+|||-+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ----EELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH----CCCeEEEECCCC
Confidence 123333 344555554311 256789999864
No 236
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.02 E-value=3.2e-09 Score=88.30 Aligned_cols=192 Identities=20% Similarity=0.307 Sum_probs=129.1
Q ss_pred hhhhccccC-CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CC
Q 026258 17 VVYNMLHED-PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DA 92 (241)
Q Consensus 17 ~~~~~~~~~-~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~ 92 (241)
..+.+.+.. .+...|+.+++.....+.+.+.... +. .-...+||.|.+||||-.++++..... ..
T Consensus 188 ~ge~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k----------~A-mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~ 256 (511)
T COG3283 188 MGEQLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQK----------LA-MLDAPLLITGETGTGKDLLAKACHLASPRHSK 256 (511)
T ss_pred HHHHHhhcccccccchHHHhhccHHHHHHHHHHHH----------hh-ccCCCeEEecCCCchHHHHHHHHhhcCcccCC
Confidence 334444433 5778899999988888887776642 21 223579999999999999999987665 67
Q ss_pred ceEEEechhhcccccchHHHHHHHHHHHHH----------hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 93 NFLKVVSSAIIDKYIGESARLIREMFGYAR----------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 93 ~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----------~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
+|+.++|..+...... .++|+++- ....+-+++||+..+ ++..|..+.++++.
T Consensus 257 pFlalNCA~lPe~~aE------sElFG~apg~~gk~GffE~AngGTVlLDeIgEm-----------Sp~lQaKLLRFL~D 319 (511)
T COG3283 257 PFLALNCASLPEDAAE------SELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM-----------SPRLQAKLLRFLND 319 (511)
T ss_pred CeeEeecCCCchhHhH------HHHhcCCCCCCCccchhhhccCCeEEeehhhhc-----------CHHHHHHHHHHhcC
Confidence 8999999988643221 24555443 233468899999888 89999999999975
Q ss_pred hcCCCCC-------CCeEEEEEeCCC-------CCCChhccCCCCcceEEEcCCCCHHHHH--------HHHHHhHcCcc
Q 026258 163 LDGFDQL-------GKVKMIMATNRP-------DVLDPALLRPGRLDRKIEIPLPNEQSRM--------EILKIHAAGIA 220 (241)
Q Consensus 163 ~~~~~~~-------~~~~vI~tt~~~-------~~l~~~l~~~~r~~~~i~l~~p~~~~r~--------~il~~~~~~~~ 220 (241)
-. +.+. -+|+||++|+.+ ..+.+.+.. |. .++.+..|...+|. .++.....++.
T Consensus 320 Gt-FRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg 395 (511)
T COG3283 320 GT-FRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFY--RL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELG 395 (511)
T ss_pred Cc-eeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHH--Hh-heeeecCCccccCcccchHHHHHHHHHHHHHhC
Confidence 31 1111 179999999754 123334443 55 45666666665554 23444444444
Q ss_pred CC-CCCCHHHHHHHhhhccCC
Q 026258 221 KH-GEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 221 ~~-~~~~~~~l~~~~~~~~~~ 240 (241)
.. ...+.+.+..++++-|.|
T Consensus 396 ~p~pkl~~~~~~~L~~y~WpG 416 (511)
T COG3283 396 VPRPKLAADLLTVLTRYAWPG 416 (511)
T ss_pred CCCCccCHHHHHHHHHcCCCc
Confidence 33 467888888999888876
No 237
>PRK06921 hypothetical protein; Provisional
Probab=99.02 E-value=4e-09 Score=86.76 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=62.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCccc-ccC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDA-IGG 139 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~-l~~ 139 (241)
...+++|+|++|+|||+|+.++|+++ +..++++....+........ ......+. .....++|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~--~~~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLN--RMKKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHH--HhcCCCEEEEeccccccCC
Confidence 35789999999999999999999987 45666776655443221111 11111122 123468999999944 211
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
.. .........+..+++..... +..+|+|||.+
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~~~----~k~tIitsn~~ 225 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRYLN----HKPILISSELT 225 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHHHC----CCCEEEECCCC
Confidence 11 11344456777787765321 23478888764
No 238
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.02 E-value=4e-10 Score=87.17 Aligned_cols=102 Identities=24% Similarity=0.379 Sum_probs=63.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHH-HHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESA-RLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
..+.+++|+|++|+|||+|+.++++++ +..+..+...++......... ......+.... ..++|+|||+...-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 456789999999999999999999877 778888888877653322110 11112233222 35799999986541
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 140 RRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
.+......+..+++.... +..+|+|||..
T Consensus 122 --------~~~~~~~~l~~ii~~R~~-----~~~tIiTSN~~ 150 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYE-----RKPTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHH-----T-EEEEEESS-
T ss_pred --------ecccccccchhhhhHhhc-----ccCeEeeCCCc
Confidence 234556677888876542 23578899864
No 239
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.97 E-value=2.3e-08 Score=80.35 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=77.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~ 145 (241)
..+-.+.||+|||||..++.+|+.+|.+++.++|....+ ...+.+++.=+.+. .+++++||++++
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 456789999999999999999999999999999988642 23334444333332 479999999999
Q ss_pred CCccHHHHHHHHHHHHHh----cCC-----------CCCCCeEEEEEeCCC----CCCChhccCCCCcceEEEcCCCCHH
Q 026258 146 TSADREIQRTLMELLNQL----DGF-----------DQLGKVKMIMATNRP----DVLDPALLRPGRLDRKIEIPLPNEQ 206 (241)
Q Consensus 146 ~~~~~~~~~~l~~ll~~~----~~~-----------~~~~~~~vI~tt~~~----~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (241)
+.+....+.+.+..+ ... .-++++.+.+|.|.. ..+|+.++. .| +.+.+-.||.+
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 665555555444432 110 111256677777643 478888887 66 77889999977
Q ss_pred HHHHHH
Q 026258 207 SRMEIL 212 (241)
Q Consensus 207 ~r~~il 212 (241)
...+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 240
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=1.2e-08 Score=77.41 Aligned_cols=140 Identities=20% Similarity=0.269 Sum_probs=78.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---------CceEEEechhhcccccc-hHHHHH-----------HH-HHHHHHhCC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNID---------ANFLKVVSSAIIDKYIG-ESARLI-----------RE-MFGYARDHQ 125 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~---------~~~~~v~~~~~~~~~~~-~~~~~~-----------~~-~f~~~~~~~ 125 (241)
-++|.|++|+|||++++.++..+. ...+.+.+......... .....+ .. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 589999999999999999997771 11223333333221100 111111 11 111223455
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CChhccCCCCcceEEEcCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV--LDPALLRPGRLDRKIEIPLP 203 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~--l~~~l~~~~r~~~~i~l~~p 203 (241)
..+|+||.+|.+...... .........+..++.. ...+++.+|+|+..... +...+.. ...+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 679999999999542210 0111223334444443 12236777777764322 2222222 146899999
Q ss_pred CHHHHHHHHHHhHcC
Q 026258 204 NEQSRMEILKIHAAG 218 (241)
Q Consensus 204 ~~~~r~~il~~~~~~ 218 (241)
+.++..++++.++++
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988764
No 241
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.96 E-value=8.5e-09 Score=75.47 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=60.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--------CCceEEEechhhccc--------------cc--chHHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI--------DANFLKVVSSAIIDK--------------YI--GESARLIREMFGYA 121 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l--------~~~~~~v~~~~~~~~--------------~~--~~~~~~~~~~f~~~ 121 (241)
...++|+|++|+|||++++.++..+ ...++.++++...+. .. .........+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999988 677888887665421 00 11233333444444
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
......+|+|||+|.+. + ...+..+....+ ..++.+|++.++
T Consensus 84 ~~~~~~~lviDe~~~l~----------~---~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------S---DEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------T---HHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC----------C---HHHHHHHHHHHh----CCCCeEEEEECh
Confidence 44555699999999982 1 223333322222 347888888765
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.94 E-value=5.4e-08 Score=80.15 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEEechhhccc---
Q 026258 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAIIDK--- 105 (241)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---------~~~~~~v~~~~~~~~--- 105 (241)
.++.++|.+.+..| ......+++|+|++|.|||++++.++..- ..+++.+.++.-.+.
T Consensus 43 ~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 43 KEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred HHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 45555565655544 12344679999999999999999998654 346777765433221
Q ss_pred -------------ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 106 -------------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 106 -------------~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
...........+....+...+.+|+|||++.++.. ....|+.+...+..+.. .-++
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~N---eL~i 181 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGN---ELQI 181 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhh---ccCC
Confidence 01112233344456666788889999999998543 34445666666555422 1145
Q ss_pred EEEEEeCCC----CCCChhccCCCCcceEEEcCCC-CHHHHHHHHHHhHcCccCC--CCCCHHHHH
Q 026258 173 KMIMATNRP----DVLDPALLRPGRLDRKIEIPLP-NEQSRMEILKIHAAGIAKH--GEIDYEAVV 231 (241)
Q Consensus 173 ~vI~tt~~~----~~l~~~l~~~~r~~~~i~l~~p-~~~~r~~il~~~~~~~~~~--~~~~~~~l~ 231 (241)
.+|+..... =.-|+.+.+ || ..+.+|.- ..++...++.++.+..++. +......++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la 244 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELA 244 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--cc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHH
Confidence 566554321 134567777 88 44556543 2245566778777776655 344433443
No 243
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.5e-09 Score=89.30 Aligned_cols=97 Identities=33% Similarity=0.558 Sum_probs=73.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc-ccccch-HHHHHHHHHHHHH----hCCCeEEEEcCcccccC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII-DKYIGE-SARLIREMFGYAR----DHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~-~~~~~~-~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~ 139 (241)
..++|+.||+|+|||.|++.+|+.++.||..-+|..+- ..|+|+ .+..+.+++..+. .+..+|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 35799999999999999999999999999999998774 345554 4566666665542 34568999999999984
Q ss_pred CCCC-C--CCCccHHHHHHHHHHHHH
Q 026258 140 RRFS-E--GTSADREIQRTLMELLNQ 162 (241)
Q Consensus 140 ~~~~-~--~~~~~~~~~~~l~~ll~~ 162 (241)
+..+ . .+-+-+-.|..+..+++.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 4432 1 233446678888888864
No 244
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.91 E-value=4.4e-09 Score=86.71 Aligned_cols=141 Identities=21% Similarity=0.369 Sum_probs=78.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCce---EEEechhhcccccchHHHHHHHHHHHH-----------HhCCCeEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANF---LKVVSSAIIDKYIGESARLIREMFGYA-----------RDHQPCII 129 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~---~~v~~~~~~~~~~~~~~~~~~~~f~~~-----------~~~~~~vl 129 (241)
..+.+++|+||+|||||++++.+...+...- ..+.++.. .....++...... ...+..|+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 4467999999999999999999887764432 22333221 1222222221111 01334499
Q ss_pred EEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC-------CCeEEEEEeCCCC---CCChhccCCCCcceEEE
Q 026258 130 FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL-------GKVKMIMATNRPD---VLDPALLRPGRLDRKIE 199 (241)
Q Consensus 130 ~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~~~vI~tt~~~~---~l~~~l~~~~r~~~~i~ 199 (241)
|+||++.-.... -......+.+.++++.-.-+... .++.+|++++... .+++++.+ .| ..+.
T Consensus 105 fiDDlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~ 176 (272)
T PF12775_consen 105 FIDDLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILN 176 (272)
T ss_dssp EEETTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE
T ss_pred EecccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEE
Confidence 999998773221 11222334555555432111111 2688888887643 36677777 66 6789
Q ss_pred cCCCCHHHHHHHHHHhHcC
Q 026258 200 IPLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 200 l~~p~~~~r~~il~~~~~~ 218 (241)
++.|+.++...|+..++..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999888876654
No 245
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.89 E-value=7.7e-08 Score=94.19 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=93.4
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce---EEEech---
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---LKVVSS--- 100 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~---~~v~~~--- 100 (241)
+...+++++|++..++++...+. ++......+.|+|++|+||||||+++++.+...+ +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 45678899999999999988874 2234567799999999999999999988774332 111110
Q ss_pred ---hhccc----ccch----HHHHHHH-------------HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHH
Q 026258 101 ---AIIDK----YIGE----SARLIRE-------------MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 156 (241)
Q Consensus 101 ---~~~~~----~~~~----~~~~~~~-------------~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l 156 (241)
..... .... ....+.. ........++.+|+|||++.. ..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~l 311 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DVL 311 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HHH
Confidence 00000 0000 0000000 111112345679999998543 122
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC
Q 026258 157 MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 157 ~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~ 218 (241)
..+..... +..++.+||+||++.+-+ ....+...+.++.|+.++-.+++..+..+
T Consensus 312 ~~L~~~~~--~~~~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 312 DALAGQTQ--WFGSGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHhhCc--cCCCCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 22222111 222467888898864322 11245567899999999999999877644
No 246
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=6.7e-08 Score=78.22 Aligned_cols=120 Identities=12% Similarity=0.121 Sum_probs=77.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEE------Eechhhcc---------------cccchHHHHHHHHHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLK------VVSSAIID---------------KYIGESARLIREMFGYAR 122 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~------v~~~~~~~---------------~~~~~~~~~~~~~f~~~~ 122 (241)
..++.+||+|+.|+||..++.++|+.+-+.--. -.|..+.. -...+... +...+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~-l~~~l~~~s 83 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALS-IINKLNRPS 83 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHH-HHHHHccCc
Confidence 456789999999999999999999877321100 00111100 00111111 222222211
Q ss_pred -h-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEc
Q 026258 123 -D-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEI 200 (241)
Q Consensus 123 -~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l 200 (241)
. ....|++|+++|.+ .....+.+...+++ +.+++.+|++|++++.+.+.++| |+ ..+.+
T Consensus 84 ~e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~ 144 (261)
T PRK05818 84 VESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RC-VQYVV 144 (261)
T ss_pred hhcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--he-eeeec
Confidence 1 34679999999999 66666666666663 44589999999999999999999 98 44667
Q ss_pred CCC
Q 026258 201 PLP 203 (241)
Q Consensus 201 ~~p 203 (241)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 666
No 247
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=8e-09 Score=80.50 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=38.7
Q ss_pred HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 117 MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 117 ~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
..+.+....|.++++|| +++..+++....+..++..+... +..+|+.|+.-
T Consensus 146 AIARALaM~P~vmLFDE----------PTSALDPElv~EVL~vm~~LA~e----GmTMivVTHEM 196 (240)
T COG1126 146 AIARALAMDPKVMLFDE----------PTSALDPELVGEVLDVMKDLAEE----GMTMIIVTHEM 196 (240)
T ss_pred HHHHHHcCCCCEEeecC----------CcccCCHHHHHHHHHHHHHHHHc----CCeEEEEechh
Confidence 34445568899999999 46667999888888888877542 67888888864
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.87 E-value=2.7e-08 Score=76.07 Aligned_cols=53 Identities=21% Similarity=0.433 Sum_probs=42.4
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
.+.+..+.|.+|+-|| ++...++.....+++++++++.. +..|+.+|++.+-+
T Consensus 148 IARAiV~~P~vLlADE----------PTGNLDp~~s~~im~lfeeinr~----GtTVl~ATHd~~lv 200 (223)
T COG2884 148 IARAIVNQPAVLLADE----------PTGNLDPDLSWEIMRLFEEINRL----GTTVLMATHDLELV 200 (223)
T ss_pred HHHHHccCCCeEeecC----------CCCCCChHHHHHHHHHHHHHhhc----CcEEEEEeccHHHH
Confidence 3444558899999999 67888999999999999998654 78899999876533
No 249
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.87 E-value=1.9e-08 Score=76.09 Aligned_cols=110 Identities=26% Similarity=0.353 Sum_probs=64.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc------------------------cchHHHHHHHHHHHH
Q 026258 69 VLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY------------------------IGESARLIREMFGYA 121 (241)
Q Consensus 69 vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~------------------------~~~~~~~~~~~f~~~ 121 (241)
++|+|+||+|||+++..++... +.+++.++........ ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998877 4556655543222100 001111122334555
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
....+.+++|||+..+...........+......+..+...... .++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCC
Confidence 66778999999999875332100011123334555555555432 3778888887654
No 250
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=1.8e-07 Score=81.88 Aligned_cols=206 Identities=13% Similarity=0.121 Sum_probs=111.8
Q ss_pred hhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 18 VYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
....|-.+..|...++|.--.+.+.++++++.-+.. ...-..++-+||+||+||||||.++.+++++|..+.+-
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~------~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAE------FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHH------hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 334444567788888888778888888888861100 11112356799999999999999999999998888765
Q ss_pred ech-------hh------cccccchHHHHHHHHHHHH------------HhCCCeEEEEcCcccccCCCCCCCCCccHHH
Q 026258 98 VSS-------AI------IDKYIGESARLIREMFGYA------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (241)
Q Consensus 98 ~~~-------~~------~~~~~~~~~~~~~~~f~~~------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~ 152 (241)
.-+ .. ........-..+......+ ....+.+|++||+=..+... +.+
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~~~- 213 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------DSE- 213 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------hHH-
Confidence 411 11 0001111111111111111 11346699999986664321 222
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCh------hccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCC-
Q 026258 153 QRTLMELLNQLDGFDQLGKVKMIMAT-NRPDVLDP------ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE- 224 (241)
Q Consensus 153 ~~~l~~ll~~~~~~~~~~~~~vI~tt-~~~~~l~~------~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~- 224 (241)
.+..++..+-....- .+++++|- ...+.-+. .+.-..|+ ..|.|.+-...-.+..|...+........
T Consensus 214 --~f~evL~~y~s~g~~-PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~ 289 (634)
T KOG1970|consen 214 --TFREVLRLYVSIGRC-PLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSG 289 (634)
T ss_pred --HHHHHHHHHHhcCCC-cEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccC
Confidence 333333333222222 33333332 22222221 12222255 46889888888888888877765433211
Q ss_pred ---CCHHHHHHHhhhccCCC
Q 026258 225 ---IDYEAVVKLAEVSRRGL 241 (241)
Q Consensus 225 ---~~~~~l~~~~~~~~~~~ 241 (241)
-+...+..+.+.+..+|
T Consensus 290 ~k~~~~~~v~~i~~~s~GDI 309 (634)
T KOG1970|consen 290 IKVPDTAEVELICQGSGGDI 309 (634)
T ss_pred CcCchhHHHHHHHHhcCccH
Confidence 24556666666655543
No 251
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=7e-09 Score=83.55 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 115 ~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
+-+++.+....|.+|+||| +..+.|...+..+++++.++... ++.|++.+++...+.
T Consensus 147 RV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~~e----g~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELRQE----GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHHC----CCEEEEEeCCcHHhH
Confidence 3345666678899999999 56677999999999999988642 788999999976543
No 252
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.1e-07 Score=78.69 Aligned_cols=144 Identities=14% Similarity=0.243 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE--------EEechhhcc-cc
Q 026258 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL--------KVVSSAIID-KY 106 (241)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~--------~v~~~~~~~-~~ 106 (241)
.+..+++.+...+.. + +-++.+||+|| .||+++++.+|+.+.+.-- .-.|..+.. ..
T Consensus 6 ~q~~~~~~L~~~~~~-----------~-rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQ-----------D-RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHc-----------C-CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 345666677776643 1 44567999996 6899999999987732110 000111100 00
Q ss_pred -------c-ch--HHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 107 -------I-GE--SARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 107 -------~-~~--~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
. +. ....++.+..... .....|++||++|.+ .....+.+...+++ +.+++
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t 135 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEI 135 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCe
Confidence 0 00 1122333332222 234579999999999 66666666666663 34478
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHH
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK 213 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~ 213 (241)
.+|++|++++.+.+.++| |+ ..+.|+. +.+...+++.
T Consensus 136 ~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 999999999999999999 99 6678866 5555555554
No 253
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.82 E-value=2.6e-08 Score=87.90 Aligned_cols=157 Identities=25% Similarity=0.310 Sum_probs=97.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHHHHHHHHHHH---------------HHhCC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESARLIREMFGY---------------ARDHQ 125 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~---------------~~~~~ 125 (241)
.....++++|.+|+||+++++++.... +.+|+.++|....... .. ..+|+. .....
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~---~~---~~lfg~~~~~~~~~~~~~~g~~~~a~ 233 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL---LE---SELFGHEKGAFTGADKRREGRFVEAD 233 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH---HH---HHhcCCCCCCcCCCCcCCCCceeECC
Confidence 345679999999999999999998765 4689999998763211 11 122221 12344
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCC-------CCChhccCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLGKVKMIMATNRPD-------VLDPALLRPG 192 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~~~vI~tt~~~~-------~l~~~l~~~~ 192 (241)
.++|||||++.+ +...|..+..+++.-.... ..-++++|++|+..- .+.+.+..
T Consensus 234 ~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~-- 300 (441)
T PRK10365 234 GGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY-- 300 (441)
T ss_pred CCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--
Confidence 679999999999 7778888888776532100 111577888886531 12222222
Q ss_pred CcceEEEcCCCCHHHH----HHHHHHhHcCcc----C-CCCCCHHHHHHHhhhccCC
Q 026258 193 RLDRKIEIPLPNEQSR----MEILKIHAAGIA----K-HGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 193 r~~~~i~l~~p~~~~r----~~il~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~ 240 (241)
++ ..+.+..|...+| ..+.+.++.+.. . ...++.+.+..+..+.|+|
T Consensus 301 ~l-~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (441)
T PRK10365 301 RL-NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 (441)
T ss_pred Hh-ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 33 1344444544444 345555544421 1 1347889999999888765
No 254
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.80 E-value=2.2e-08 Score=79.44 Aligned_cols=52 Identities=29% Similarity=0.426 Sum_probs=39.0
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+.+..+.|.+|+.|| ++...+......+..++..+.. ..+..+|+.||++.
T Consensus 153 IARAL~~~P~iilADE----------PTgnLD~~t~~~V~~ll~~~~~---~~g~tii~VTHd~~ 204 (226)
T COG1136 153 IARALINNPKIILADE----------PTGNLDSKTAKEVLELLRELNK---ERGKTIIMVTHDPE 204 (226)
T ss_pred HHHHHhcCCCeEEeeC----------ccccCChHHHHHHHHHHHHHHH---hcCCEEEEEcCCHH
Confidence 4445558899999999 6677788888888888887742 23678999999754
No 255
>PF14516 AAA_35: AAA-like domain
Probab=98.80 E-value=9.5e-07 Score=75.09 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHHH
Q 026258 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESAR 112 (241)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~ 112 (241)
....+-+.+.+.+. .++..+.|.||..+||||++..+.+.+ +...+.+++.............
T Consensus 15 ~R~~~e~~~~~~i~--------------~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 15 ERPPAEQECYQEIV--------------QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CchHHHHHHHHHHh--------------cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHH
Confidence 44445666666663 457889999999999999999988766 6677778776653321111110
Q ss_pred -------------------------------HHHHHHHH---HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHH
Q 026258 113 -------------------------------LIREMFGY---ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 158 (241)
Q Consensus 113 -------------------------------~~~~~f~~---~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ 158 (241)
.....|.. .....|-||+|||+|.++... ....+....+..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~ 155 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRS 155 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHH
Confidence 11111211 112567899999999996421 112233333333
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCh-hccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 159 LLNQLDGFDQLGKVKMIMATNRPDVLDP-ALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 159 ll~~~~~~~~~~~~~vI~tt~~~~~l~~-~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
+.+.......-.+.++|++......+.. .-.+|--++..+.++..+.++...+++.+-
T Consensus 156 ~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 156 WYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred HHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 3332221112224555555433222222 223333345678999999999999988764
No 256
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.80 E-value=7.5e-08 Score=74.36 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=68.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEech--hhccccc-chHHHHHHHHHHHHHhCCCeEEEEcCcccc
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSS--AIIDKYI-GESARLIREMFGYARDHQPCIIFMDEIDAI 137 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~--~~~~~~~-~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l 137 (241)
+.++..+.|.||+|+|||||++.++...... -+.++.. ....+.. -+.....+-.+..+....|.++++||-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEP--- 98 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP--- 98 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECC---
Confidence 4677889999999999999999999876322 1122111 0111111 122223334455666788999999994
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 138 GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....+......+..++..+.. .++..+|++|++.+.
T Consensus 99 -------ts~LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~~ 134 (177)
T cd03222 99 -------SAYLDIEQRLNAARAIRRLSE---EGKKTALVVEHDLAV 134 (177)
T ss_pred -------cccCCHHHHHHHHHHHHHHHH---cCCCEEEEEECCHHH
Confidence 455577777777777766532 123678888888643
No 257
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.80 E-value=7e-08 Score=73.68 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=71.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhhc--------cc---cc--chHHHHHHHHHHHHHhC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAII--------DK---YI--GESARLIREMFGYARDH 124 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~~--------~~---~~--~~~~~~~~~~f~~~~~~ 124 (241)
++.+.++..+.|.|++|+|||||++.++...... -+.++..... .. +. -+.....+-.+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 4456788899999999999999999999776321 1122111110 00 00 11122333445666778
Q ss_pred CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 125 ~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
.|.++++||- ....+......+..++.++.. .+..+|++|++.+.
T Consensus 100 ~p~illlDEP----------~~~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~ 144 (163)
T cd03216 100 NARLLILDEP----------TAALTPAEVERLFKVIRRLRA----QGVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECC----------CcCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 8999999994 455678888888888876632 15678888888653
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.5e-07 Score=77.18 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=85.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC-------------ceEEEechhhcccccchHHHHHHHHHHHHH----h-CCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDA-------------NFLKVVSSAIIDKYIGESARLIREMFGYAR----D-HQP 126 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~-~~~ 126 (241)
-++.+||+|+.|.||+++++.+++.+.+ .+..++..+ ... ....++.+..... . ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---CcC--CHHHHHHHHHHhccCCcccCCc
Confidence 3456889999999999999999988722 122222101 101 1122223322221 1 356
Q ss_pred eEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHH
Q 026258 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQ 206 (241)
Q Consensus 127 ~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (241)
.|++||+++.+ ....++.+...+++ +.+++.+|++|++++.+-+.+++ |+ ..+.+.+++.+
T Consensus 92 KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 92 KILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred eEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 79999999888 55566666666664 33578888888888889999999 88 67999999988
Q ss_pred HHHHHHHH
Q 026258 207 SRMEILKI 214 (241)
Q Consensus 207 ~r~~il~~ 214 (241)
+..+.+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 88776654
No 259
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.78 E-value=9.1e-08 Score=77.49 Aligned_cols=84 Identities=23% Similarity=0.272 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCc
Q 026258 115 REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRL 194 (241)
Q Consensus 115 ~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~ 194 (241)
+-+++.+....|.+|++|| +++..+-..|-.+++++..+.. ..+..+|++.++ ++-+.+-.+++
T Consensus 146 rv~iArALaQ~~~iLLLDE----------PTs~LDi~~Q~evl~ll~~l~~---~~~~tvv~vlHD---lN~A~ryad~~ 209 (258)
T COG1120 146 RVLIARALAQETPILLLDE----------PTSHLDIAHQIEVLELLRDLNR---EKGLTVVMVLHD---LNLAARYADHL 209 (258)
T ss_pred HHHHHHHHhcCCCEEEeCC----------CccccCHHHHHHHHHHHHHHHH---hcCCEEEEEecC---HHHHHHhCCEE
Confidence 3445566668889999999 5666688888888888887742 236789999988 44444433322
Q ss_pred -----ceEEEcCCCCHHHHHHHHHH
Q 026258 195 -----DRKIEIPLPNEQSRMEILKI 214 (241)
Q Consensus 195 -----~~~i~l~~p~~~~r~~il~~ 214 (241)
+..+....|.+---.+.++.
T Consensus 210 i~lk~G~i~a~G~p~evlT~e~l~~ 234 (258)
T COG1120 210 ILLKDGKIVAQGTPEEVLTEENLRE 234 (258)
T ss_pred EEEECCeEEeecCcchhcCHHHHHH
Confidence 22455566655444444443
No 260
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.76 E-value=2.6e-08 Score=79.55 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+..+..+.|.||+||||||+++.+-+.+
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 4556778889999999999999999998665
No 261
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.76 E-value=3.3e-08 Score=92.31 Aligned_cols=203 Identities=18% Similarity=0.200 Sum_probs=132.5
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChH-HHHhcCCCCCc--eEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE-LFLRVGIKPPK--GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~--~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
..+..+..+.+..++.|.......+.++++.+.+.+. .|...+..... .++++||||+|||+.+..+|..++..+++
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 3555667788888899999888899999987632211 11111111111 26999999999999999999999999999
Q ss_pred EechhhcccccchH-------HHHHHHHH---HH--HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 97 VVSSAIIDKYIGES-------ARLIREMF---GY--ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 97 v~~~~~~~~~~~~~-------~~~~~~~f---~~--~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
.+.....+...... ...+...+ .. .......||++||+|.+++ .+......+..++...
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~ks- 458 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCKKS- 458 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHHhc-
Confidence 99887665432111 01111111 00 0111233999999999965 2444555555555522
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccCCC
Q 026258 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRRGL 241 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (241)
..-+|++||+..-....-.. +.+..+.|+.|+.+.+..-+...+..... .++...+..+.++++.+|
T Consensus 459 ------~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~--ki~~~~l~~~s~~~~~Di 525 (871)
T KOG1968|consen 459 ------SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGI--KISDDVLEEISKLSGGDI 525 (871)
T ss_pred ------cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccce--ecCcHHHHHHHHhcccCH
Confidence 45589999886644332333 55577899999999998888877766554 467777777777766553
No 262
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.75 E-value=1.4e-07 Score=70.52 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=67.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce--EEEechhhccccc-chHHHHHHHHHHHHHhCCCeEEEEcCccc
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIIDKYI-GESARLIREMFGYARDHQPCIIFMDEIDA 136 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~--~~v~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~vl~lDe~d~ 136 (241)
++.+.++..+.|.|++|+|||||+++++......- +.++......... -+.....+-.+..+....|.++++||-
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP-- 97 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEP-- 97 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCC--
Confidence 34567788999999999999999999998763221 1111110000000 112222333456666788999999994
Q ss_pred ccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 137 IGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....+......+.+++..+ +..++++|++.+.
T Consensus 98 --------~~~LD~~~~~~l~~~l~~~-------~~til~~th~~~~ 129 (144)
T cd03221 98 --------TNHLDLESIEALEEALKEY-------PGTVILVSHDRYF 129 (144)
T ss_pred --------ccCCCHHHHHHHHHHHHHc-------CCEEEEEECCHHH
Confidence 4445777777777777665 2368888887553
No 263
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.74 E-value=1.6e-07 Score=77.79 Aligned_cols=161 Identities=20% Similarity=0.309 Sum_probs=102.8
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCceEEEechhhccc----
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS---NIDANFLKVVSSAIIDK---- 105 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~---~l~~~~~~v~~~~~~~~---- 105 (241)
.+.|..+..+.+.+++..- .-....+.+++.||.|+|||++...... +.+-.++.+...+..-.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt---------~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQT---------ILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHH---------HHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 5667777777777776531 1125668899999999999997766543 45666766665544321
Q ss_pred -----------------ccchHHHHHHHHHHHHHh-----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 106 -----------------YIGESARLIREMFGYARD-----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 106 -----------------~~~~~~~~~~~~f~~~~~-----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
..++....+..+....+. ..+.+.++||+|.+. .+..|..++.+++..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~----------~h~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFA----------PHSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccc----------cchhhHHHHHHHHHH
Confidence 111222222233222221 224577788999985 344567788888765
Q ss_pred cCCCCCCCeEEEEEeCCCC---CCChhccCCCCcceE-EEc-CCCCHHHHHHHHHHhH
Q 026258 164 DGFDQLGKVKMIMATNRPD---VLDPALLRPGRLDRK-IEI-PLPNEQSRMEILKIHA 216 (241)
Q Consensus 164 ~~~~~~~~~~vI~tt~~~~---~l~~~l~~~~r~~~~-i~l-~~p~~~~r~~il~~~~ 216 (241)
. ++.-++++|+.|...+ .+...+.+ ||... |.+ |.....+...+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 4 3344789998886654 45667777 99875 666 4457788888888877
No 264
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.73 E-value=5.1e-07 Score=73.79 Aligned_cols=87 Identities=29% Similarity=0.337 Sum_probs=58.0
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC------------CCCCCChhccCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN------------RPDVLDPALLRPGR 193 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~------------~~~~l~~~l~~~~r 193 (241)
|+||||||++.| +-+-...+++-++.-- ...+|.+|| +|+.++-.+.+ |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~d~------~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALENDM------APIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhhcc------CcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 789999999888 5555555555554211 223444444 34567777777 6
Q ss_pred cceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHh
Q 026258 194 LDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLA 234 (241)
Q Consensus 194 ~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 234 (241)
. ..|...+++.++.++||+.++.+... ..+.+++..++
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv--~m~~~A~d~Lt 387 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDV--EMNPDALDLLT 387 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhcc--ccCHHHHHHHH
Confidence 6 56788899999999999999887654 34445544444
No 265
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.72 E-value=9.2e-08 Score=73.81 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=66.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------eEEEe---------chhh-cccccchHH--HHH
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-------------FLKVV---------SSAI-IDKYIGESA--RLI 114 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-------------~~~v~---------~~~~-~~~~~~~~~--~~~ 114 (241)
++.+.++..+.|.||+|+|||||++++....+.- +..+. .... ......... ...
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 4456778889999999999999999996322111 11110 0000 011111111 222
Q ss_pred HHHHHHHHhCC--CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 115 REMFGYARDHQ--PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 115 ~~~f~~~~~~~--~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+-.+..+.... |.++++||- ....+......+.+.+..+.. .+..+|++|++.+.
T Consensus 95 rl~laral~~~~~p~llLlDEP----------t~~LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~~ 151 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEP----------STGLHQQDINQLLEVIKGLID----LGNTVILIEHNLDV 151 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 33345555677 899999994 445577777777777776532 25678889988653
No 266
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.71 E-value=2.3e-08 Score=84.50 Aligned_cols=31 Identities=45% Similarity=0.520 Sum_probs=26.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+-|.||+||||||++++||..-
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456777789999999999999999999544
No 267
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.70 E-value=2.5e-07 Score=71.32 Aligned_cols=110 Identities=24% Similarity=0.351 Sum_probs=69.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhh--------------ccccc-----------chHHH
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI--------------IDKYI-----------GESAR 112 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~--------------~~~~~-----------~~~~~ 112 (241)
++.+.++..+.|.||+|+|||||++.++...... -+.++.... ..+.. -+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence 3445677889999999999999999999865211 111111000 00000 01122
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 113 LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 113 ~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..+-.+..+....|.++++|| +....+......+.+++..+.. .+..+|++|++.+.
T Consensus 102 ~qrv~la~al~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 158 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDE----------PNSHLDVEGERALNQAIAALKA----AGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEEC----------CccccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 233445666678899999999 4555678888888888876632 15678888888653
No 268
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.9e-07 Score=71.84 Aligned_cols=110 Identities=23% Similarity=0.324 Sum_probs=69.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhh-----------cc---cc----c-------chHHH
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI-----------ID---KY----I-------GESAR 112 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~-----------~~---~~----~-------~~~~~ 112 (241)
++.+.++..+.|.||+|+|||||++.++...... -+.++.... .. +. . -+.-.
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 4456788899999999999999999999876221 111111000 00 00 0 00011
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 113 LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 113 ~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..+-.+..+....|.++++|| +....+......+.+++..+.. +..+|++|++.+.+
T Consensus 102 ~~rl~la~al~~~p~llllDE----------P~~gLD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDE----------ATSALDPETEALILEALRALAK-----GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHhcC-----CCEEEEEecCHHHH
Confidence 122234555667899999999 4555677778888888877632 36788889886654
No 269
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.70 E-value=8.4e-08 Score=74.32 Aligned_cols=59 Identities=25% Similarity=0.464 Sum_probs=38.7
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---eEEEechhh
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSSAI 102 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---~~~v~~~~~ 102 (241)
++|.+++.+++...+... ....+..++|+|++|+|||++++.+...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~~----------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAA----------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGGT----------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHH----------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 589999999999999521 12445789999999999999999998777332 666665554
No 270
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.69 E-value=1.9e-07 Score=71.46 Aligned_cols=106 Identities=29% Similarity=0.403 Sum_probs=67.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---e--------EEEec-hhhccc---------ccchH--HHHHHH
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---F--------LKVVS-SAIIDK---------YIGES--ARLIRE 116 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---~--------~~v~~-~~~~~~---------~~~~~--~~~~~~ 116 (241)
++.+.++..+.|.|++|+|||||++.++...... + ..+.. ..+... ..... ....+-
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 4456788899999999999999999999876221 1 11110 000000 01111 122233
Q ss_pred HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 117 MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 117 ~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+..+....|.++++|| +....+......+.+++..+ +..+|++|++.+
T Consensus 101 ~laral~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 101 AFARLLLHKPKFVFLDE----------ATSALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHHHcCCCEEEEEC----------CccccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 45556668899999999 44555777788888887764 256888888854
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.69 E-value=2.1e-07 Score=72.01 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=69.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhh-------------cccc------------cchH--
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI-------------IDKY------------IGES-- 110 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~-------------~~~~------------~~~~-- 110 (241)
++.+.++..+.|.|++|+|||||++.++...... -+.++.... ..+. ....
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4556788899999999999999999999775221 111111000 0000 0011
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 111 ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 111 ~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
....+-.+..+....|.++++||. ....+......+.+++..+.. +..+|++|++.+.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP----------~~~LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEP----------TVGLDPITERQLLSLIFEVLK-----DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECC----------cccCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHH
Confidence 122233455566688999999994 445577777888888876631 46788888886644
No 272
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.68 E-value=1.3e-07 Score=75.16 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=52.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccccc-----------------------chHHHHH
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI-----------------------GESARLI 114 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~-----------------------~~~~~~~ 114 (241)
-|+..+.-++|+||||||||+++..++... +..++++++..+..... ......+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 367788889999999999999999988654 55677777654110000 0111123
Q ss_pred HHHHHHHHhCCCeEEEEcCcccccC
Q 026258 115 REMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 115 ~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
..+...+....+++|+||-+..++.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3333444455789999999998864
No 273
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=3.2e-07 Score=69.52 Aligned_cols=111 Identities=26% Similarity=0.376 Sum_probs=68.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce--EEEechhhcc----------ccc--chHHHHHHHHHHHHHhCC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF--LKVVSSAIID----------KYI--GESARLIREMFGYARDHQ 125 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~--~~v~~~~~~~----------~~~--~~~~~~~~~~f~~~~~~~ 125 (241)
++.+.++..+.|.|++|+||||++++++..+...- +.++...... .+. -+.....+-.+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 34456778899999999999999999998764321 2222111100 000 011122233355556677
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
|.++++||.. ...+......+.+++..+.. . +..+|+++++.+.+
T Consensus 99 ~~i~ilDEp~----------~~lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 99 PDLLLLDEPT----------SGLDPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred CCEEEEeCCC----------cCCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 8999999953 34466677777777776532 1 35788888876543
No 274
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.67 E-value=2e-07 Score=74.15 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=43.3
Q ss_pred HHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccC
Q 026258 116 EMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR 190 (241)
Q Consensus 116 ~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~ 190 (241)
-+++.+....|.+|+||| +..+.+......+.+.+.++.. ..+...+|+.|+..+++++.+-.
T Consensus 180 vLiaRALv~~P~LLiLDE----------P~~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 180 VLIARALVKDPELLILDE----------PAQGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHhcCCCEEEecC----------ccccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccce
Confidence 345666668899999999 3444466556566666666542 23467789999999988876544
No 275
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.66 E-value=4.8e-07 Score=73.90 Aligned_cols=186 Identities=19% Similarity=0.235 Sum_probs=108.6
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----eEE--Eechhhcc-c
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-----FLK--VVSSAIID-K 105 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~-----~~~--v~~~~~~~-~ 105 (241)
|.|+.=+++.+...+..++.++. -.++-.+-++|.+||||+.+++.+|+.+... ++. +....+-. .
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 67887778877777776554322 2445668899999999999999999877221 111 11111110 1
Q ss_pred ccchH-HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCC
Q 026258 106 YIGES-ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD--QLGKVKMIMATNRPD 182 (241)
Q Consensus 106 ~~~~~-~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~~~vI~tt~~~~ 182 (241)
....- .+....+.+.+..+..+++++||+|.+ .+.....+.-+++...... ...+.++|+-+|.-.
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 11111 222334455566788899999999999 7777777777777432222 122556666655211
Q ss_pred -----------------------CCChh-----------------ccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC
Q 026258 183 -----------------------VLDPA-----------------LLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH 222 (241)
Q Consensus 183 -----------------------~l~~~-----------------l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~ 222 (241)
.+.+. +.+..+++..|.|.+.+...-...++..+....+.
T Consensus 227 ~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~ 306 (344)
T KOG2170|consen 227 SEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLA 306 (344)
T ss_pred hHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccc
Confidence 11111 11122445567788888888888888777766654
Q ss_pred CCCC-HHHHHHHhhh
Q 026258 223 GEID-YEAVVKLAEV 236 (241)
Q Consensus 223 ~~~~-~~~l~~~~~~ 236 (241)
.+-+ .+.++....+
T Consensus 307 ~d~~~~erva~~l~f 321 (344)
T KOG2170|consen 307 PDQDFVERVANSLSF 321 (344)
T ss_pred cchHHHHHHHHhhcc
Confidence 3332 2444443333
No 276
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.66 E-value=5e-07 Score=75.08 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHH--hCCc---eEEEechhhccc-------
Q 026258 38 SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN--IDAN---FLKVVSSAIIDK------- 105 (241)
Q Consensus 38 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~--l~~~---~~~v~~~~~~~~------- 105 (241)
+..+++|.+.+... . .....+.|+|++|+|||+||..+++. .... ++.++.....+.
T Consensus 2 e~~~~~l~~~L~~~----------~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN----------S-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT----------T-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC----------C-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 56677777777531 1 45567999999999999999999977 3222 222332221110
Q ss_pred ------------ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 106 ------------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 106 ------------~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
....... ....+......++.+|++|+++.. . .+..+...+. ....+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~-~~~~l~~~L~~~~~LlVlDdv~~~-----------~-----~~~~l~~~~~--~~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEE-LQDQLRELLKDKRCLLVLDDVWDE-----------E-----DLEELREPLP--SFSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHH-HHHHHHHHHCCTSEEEEEEEE-SH-----------H-----HH-------H--CHHSS-E
T ss_pred ccccccccccccccccccc-ccccchhhhccccceeeeeeeccc-----------c-----cccccccccc--ccccccc
Confidence 0011222 223333334455899999998665 1 2222222111 1112678
Q ss_pred EEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc
Q 026258 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA 220 (241)
Q Consensus 174 vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~ 220 (241)
+|+||.+.. +...... . ...+.++..+.++-.+++..+.....
T Consensus 132 ilvTTR~~~-v~~~~~~--~-~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 132 ILVTTRDRS-VAGSLGG--T-DKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp EEEEESCGG-GGTTHHS--C-EEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred ccccccccc-ccccccc--c-cccccccccccccccccccccccccc
Confidence 888887632 2111111 1 35789999999999999998876544
No 277
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.3e-07 Score=72.32 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=37.0
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+.+...+|.||++|| +.+..++-....+.+++.+++. ...+|+.||+.+
T Consensus 160 IARalAv~PeVlLmDE----------PtSALDPIsT~kIEeLi~eLk~-----~yTIviVTHnmq 209 (253)
T COG1117 160 IARALAVKPEVLLMDE----------PTSALDPISTLKIEELITELKK-----KYTIVIVTHNMQ 209 (253)
T ss_pred HHHHHhcCCcEEEecC----------cccccCchhHHHHHHHHHHHHh-----ccEEEEEeCCHH
Confidence 3344457899999999 4555677777888888888863 677888888754
No 278
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.8e-07 Score=87.07 Aligned_cols=167 Identities=25% Similarity=0.332 Sum_probs=115.3
Q ss_pred cccccch-HHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEEec
Q 026258 31 YSAVGGL-SDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVS 99 (241)
Q Consensus 31 ~~~l~g~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v~~ 99 (241)
++-++|. ++.++++.+.+.. ...+|-+|.|.||+|||.++.-+++.. ...++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 4668888 8999999998864 344789999999999999999999887 233555555
Q ss_pred hhhc--ccccchHHHHHHHHHHHHH-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 026258 100 SAII--DKYIGESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (241)
Q Consensus 100 ~~~~--~~~~~~~~~~~~~~f~~~~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 176 (241)
..+. ..+.++.+..++.+...+. .....||++||++.+.+.+.. .. .....+.+......+++.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~-------~~d~~nlLkp~L~rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YG-------AIDAANLLKPLLARGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---ch-------HHHHHHhhHHHHhcCCeEEEe
Confidence 5433 3566778888888888777 445679999999999876643 00 112222222222334588998
Q ss_pred EeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC
Q 026258 177 ATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG 223 (241)
Q Consensus 177 tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~ 223 (241)
||...+ .-++++.+ || .-+.++.|+.+.-..|++........++
T Consensus 322 atT~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~~~~e~~h 370 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLSERYEVHH 370 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhhhhhcccc
Confidence 876432 45678888 88 4467899988877777776555544433
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.65 E-value=9e-07 Score=65.99 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
....+++.|+||+||||++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34579999999999999999999877
No 280
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.9e-07 Score=74.12 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=39.2
Q ss_pred HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 117 MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 117 ~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+..|...+|.+|++||. .+..+...|..+..++.++... -+..+|+.|++..
T Consensus 151 aIARAL~~~PklLIlDEp----------tSaLD~siQa~IlnlL~~l~~~---~~lt~l~IsHdl~ 203 (252)
T COG1124 151 AIARALIPEPKLLILDEP----------TSALDVSVQAQILNLLLELKKE---RGLTYLFISHDLA 203 (252)
T ss_pred HHHHHhccCCCEEEecCc----------hhhhcHHHHHHHHHHHHHHHHh---cCceEEEEeCcHH
Confidence 344455588999999995 4556888888888888877532 2678999999854
No 281
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=1e-07 Score=78.31 Aligned_cols=126 Identities=28% Similarity=0.395 Sum_probs=78.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------eEE-----------------------------------
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDAN----------FLK----------------------------------- 96 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----------~~~----------------------------------- 96 (241)
.+..+.-+.|.|-+|||||||++++-+..... +..
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 34566779999999999999999997444211 000
Q ss_pred ----------------------EechhhcccccchHHHHHHHHHHHHH--hCCCeEEEEcCcccccCCCCCCCCCccHHH
Q 026258 97 ----------------------VVSSAIIDKYIGESARLIREMFGYAR--DHQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (241)
Q Consensus 97 ----------------------v~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~ 152 (241)
+....+..+++.+.+..+++..+.++ ...|.||++||....+. .--..+.
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD------PLIR~~m 203 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD------PLIRTEM 203 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC------hHHHHHH
Confidence 12223333455555566666655544 47799999999765531 0113445
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcc-----eEEEcCCC
Q 026258 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLD-----RKIEIPLP 203 (241)
Q Consensus 153 ~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~-----~~i~l~~p 203 (241)
|..+.++-..+ +-.+||.||+ ++++++--+|+. ..+.+.-|
T Consensus 204 QdeLl~Lq~~l-------~KTIvFitHD---LdEAlriG~rIaimkdG~ivQ~Gtp 249 (386)
T COG4175 204 QDELLELQAKL-------KKTIVFITHD---LDEALRIGDRIAIMKDGEIVQVGTP 249 (386)
T ss_pred HHHHHHHHHHh-------CCeEEEEecC---HHHHHhccceEEEecCCeEEEeCCH
Confidence 66666666665 4569999998 677776544542 24555544
No 282
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.64 E-value=1.5e-08 Score=86.03 Aligned_cols=172 Identities=18% Similarity=0.174 Sum_probs=86.3
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh----hccc-cc
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA----IIDK-YI 107 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~----~~~~-~~ 107 (241)
.+.|.+.+|..+.-.+..-...... .....+..-|+||+|.||+|||.|++.+++.....++.-.... +... ..
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 6889999888887666543211000 0001233458999999999999999988755543332221110 1000 00
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc-CCCCC-------CCeEEEEEeC
Q 026258 108 GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GFDQL-------GKVKMIMATN 179 (241)
Q Consensus 108 ~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~-------~~~~vI~tt~ 179 (241)
......+.--.+.......+|++|||+|.+ +......+.+.++.-. .+... -++.|++++|
T Consensus 104 d~~~~~~~leaGalvlad~GiccIDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~N 172 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADGGICCIDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAAN 172 (331)
T ss_dssp CGGTSSECEEE-HHHHCTTSEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE-
T ss_pred ccccceeEEeCCchhcccCceeeecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHh
Confidence 000000000001122244589999999999 5555667777776421 11111 2678888888
Q ss_pred CCC-------------CCChhccCCCCcceEEEc-CCCCHHHHHHHHHHhHcC
Q 026258 180 RPD-------------VLDPALLRPGRLDRKIEI-PLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 180 ~~~-------------~l~~~l~~~~r~~~~i~l-~~p~~~~r~~il~~~~~~ 218 (241)
... .+++.+.+ ||+..+.+ +.++.+.-..+.+..+..
T Consensus 173 P~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 173 PKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp -TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 654 36778888 99987765 677877666666655544
No 283
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.62 E-value=3.1e-07 Score=71.26 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=68.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhh---------------------------cccccchH
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAI---------------------------IDKYIGES 110 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~---------------------------~~~~~~~~ 110 (241)
++.+.++..+.|.|++|+|||||++.++...... -+.++.... ........
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4456778899999999999999999999866221 112211110 00001111
Q ss_pred H--HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 111 A--RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 111 ~--~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
+ ...+-.+..+....|.++++||- ....+......+.+++..+.. ..+..+|++|++.+.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP----------~~~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEP----------TSHLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 1 11222344455578999999994 445577777888888876632 1145788888886543
No 284
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.62 E-value=6.2e-08 Score=81.42 Aligned_cols=31 Identities=39% Similarity=0.527 Sum_probs=26.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+..+..+.|.||+||||||+++.+|...
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999654
No 285
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.4e-07 Score=70.54 Aligned_cols=110 Identities=23% Similarity=0.329 Sum_probs=68.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechh-------------hccc----ccc---------hHH
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSA-------------IIDK----YIG---------ESA 111 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~-------------~~~~----~~~---------~~~ 111 (241)
++.+.++..+.|.|++|+|||||++.++...... -+.++... +..+ ..+ +..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4456778889999999999999999999765211 01111000 0000 000 111
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 112 ~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...+-.+..+....|.++++||- ....+......+.+++..+.. . +..+|++|++.+.
T Consensus 100 ~~qrv~laral~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~~ 157 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEP----------TSGLDPESRREFWELLRELKK---E-GKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHHH
Confidence 22233456666788999999994 555678888888888877642 1 3578888887553
No 286
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.60 E-value=2.4e-07 Score=82.87 Aligned_cols=167 Identities=19% Similarity=0.200 Sum_probs=95.9
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcC-CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh-hcccccchH
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVG-IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGES 110 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~-~~~~~~~~~ 110 (241)
.|.|.+.+|+.|.-.+-.=. ..-+...| .+..-|+||+|.||||||.+++.+++.+....+.-.... -++......
T Consensus 430 sIye~edvKkglLLqLfGGt--~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGT--RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcCC--cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 57888999988877663311 11111211 223357999999999999999999988755443322111 000000000
Q ss_pred H-HHHHHHH---HHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc-CC-------CCCCCeEEEEEe
Q 026258 111 A-RLIREMF---GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GF-------DQLGKVKMIMAT 178 (241)
Q Consensus 111 ~-~~~~~~f---~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~-------~~~~~~~vI~tt 178 (241)
. ...+++. +...-...++-+|||||++ +......+.+.++.-. ++ .-+-+..|++++
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM-----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaA 576 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKM-----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAA 576 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhh-----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeee
Confidence 0 0000100 0011244579999999999 5556666666665421 00 112267788888
Q ss_pred CCCC-------------CCChhccCCCCcceEE-EcCCCCHHHHHHHHHH
Q 026258 179 NRPD-------------VLDPALLRPGRLDRKI-EIPLPNEQSRMEILKI 214 (241)
Q Consensus 179 ~~~~-------------~l~~~l~~~~r~~~~i-~l~~p~~~~r~~il~~ 214 (241)
|... .+++.|++ ||+.++ -++.||+..-+.|-.+
T Consensus 577 NP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 577 NPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred ccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 8432 47889999 998865 5588888755544443
No 287
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.59 E-value=2.6e-07 Score=69.44 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..++|.||+|||||||.+.+|...
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4456778899999999999999999999655
No 288
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.58 E-value=1.4e-07 Score=74.74 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=72.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------------eEE----------------
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---------------------------FLK---------------- 96 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---------------------------~~~---------------- 96 (241)
++.+.++..+.|.||+||||||++|.+...+... ++.
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVa 107 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVA 107 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhh
Confidence 4456778889999999999999999998655111 000
Q ss_pred ------------------------Eechhh-cccccchHHHHHHHH--HHHHHhCCCeEEEEcCcccccCCCCCCCCCcc
Q 026258 97 ------------------------VVSSAI-IDKYIGESARLIREM--FGYARDHQPCIIFMDEIDAIGGRRFSEGTSAD 149 (241)
Q Consensus 97 ------------------------v~~~~~-~~~~~~~~~~~~~~~--f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~ 149 (241)
|..... ...++.+.+..+++. ++.|....|.+|++|| ++.+.+
T Consensus 108 fplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE----------PtsGLD 177 (263)
T COG1127 108 FPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE----------PTSGLD 177 (263)
T ss_pred eehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC----------CCCCCC
Confidence 000000 112333344444444 3444557799999999 677778
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 150 REIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 150 ~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+-....+.+++..++.. -+.++|..||+.++
T Consensus 178 PI~a~~~~~LI~~L~~~---lg~T~i~VTHDl~s 208 (263)
T COG1127 178 PISAGVIDELIRELNDA---LGLTVIMVTHDLDS 208 (263)
T ss_pred cchHHHHHHHHHHHHHh---hCCEEEEEECChHH
Confidence 88888888888776532 26788888988543
No 289
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.2e-07 Score=72.87 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++++.++..+.+.||+|||||||++.+|...
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 5667888899999999999999999999655
No 290
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.57 E-value=1.1e-07 Score=79.34 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=39.9
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
+..+.|.++++|| +..+.|+.....+.+++..+... ++..|+++||.++++
T Consensus 150 aL~~~P~lliLDE----------Pt~GLDp~~~~~~~~~l~~l~~~---g~~tvlissH~l~e~ 200 (293)
T COG1131 150 ALLHDPELLILDE----------PTSGLDPESRREIWELLRELAKE---GGVTILLSTHILEEA 200 (293)
T ss_pred HHhcCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHHhC---CCcEEEEeCCcHHHH
Confidence 3448899999999 67788999889999888877532 347899999987644
No 291
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.57 E-value=8.8e-07 Score=76.16 Aligned_cols=115 Identities=16% Similarity=0.337 Sum_probs=66.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccccc------c--------hHHHHHHHHHHHHHhC
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI------G--------ESARLIREMFGYARDH 124 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~------~--------~~~~~~~~~f~~~~~~ 124 (241)
|+.++..++|.|+||+|||+++..++..+ +..+++++......+.. + .....+..+...+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57788889999999999999999998765 34566665432211100 0 0011234455555667
Q ss_pred CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 125 ~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
.|.+|+||++..+.....+...+...+....+..+....+. .++.+|++.+.
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~----~~itvilvghv 209 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE----RNIPIFIVGHV 209 (372)
T ss_pred CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHH----cCCeEEEEeec
Confidence 89999999999886432211111122223333333333222 25677777653
No 292
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.57 E-value=4.1e-07 Score=81.04 Aligned_cols=157 Identities=29% Similarity=0.364 Sum_probs=102.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCceEEEechhhcccccchHHHHHHHHHHHH----------------HhCCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAIIDKYIGESARLIREMFGYA----------------RDHQP 126 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l--~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~----------------~~~~~ 126 (241)
...++++.|.+|+||-.+++++.... ..+|+.++|..+.....++ .+|++. .....
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~lies------ELFGy~~GafTga~~kG~~g~~~~A~g 408 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIES------ELFGYVAGAFTGARRKGYKGKLEQADG 408 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhH------HHhccCccccccchhccccccceecCC
Confidence 34579999999999999999998776 5689999999886544333 333332 22345
Q ss_pred eEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-----CCCCeEEEEEeCCCC-------CCChhccCCCCc
Q 026258 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-----QLGKVKMIMATNRPD-------VLDPALLRPGRL 194 (241)
Q Consensus 127 ~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----~~~~~~vI~tt~~~~-------~l~~~l~~~~r~ 194 (241)
+.+|+||+..+ .-..|..+.+++++-.-.+ ..=.++||++|+.+= .+.+.+-- |.
T Consensus 409 GtlFldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyy--rL 475 (606)
T COG3284 409 GTLFLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYY--RL 475 (606)
T ss_pred CccHHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHH--Hh
Confidence 69999999998 7888999999998753211 111688999998641 22222322 33
Q ss_pred -ceEEEcCCCC-HHHHHHHHHHhHcCcc-CCCCCCHHHHHHHhhhccCC
Q 026258 195 -DRKIEIPLPN-EQSRMEILKIHAAGIA-KHGEIDYEAVVKLAEVSRRG 240 (241)
Q Consensus 195 -~~~i~l~~p~-~~~r~~il~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 240 (241)
..+|.+|+.. ..++...+..++.+.. -.-.++.+.++.+-.+-|+|
T Consensus 476 ~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG 524 (606)
T COG3284 476 NAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG 524 (606)
T ss_pred cCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC
Confidence 1244555442 2344445554444432 22467888888888887776
No 293
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.57 E-value=7.6e-07 Score=78.53 Aligned_cols=115 Identities=16% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccc--------------hHHHHHHHHHHHHHhC
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIG--------------ESARLIREMFGYARDH 124 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~f~~~~~~ 124 (241)
|+.++..++|+|+||+|||+|+..++... +..+++++..+...+... ..+..+..++..+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67788889999999999999999998766 556677665433221100 0011233445555566
Q ss_pred CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 125 ~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
.|.+++||.+..+.........+...+....+..+....+. .++.++++++.
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~----~~itvilv~hv 207 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ----RGIAVFLVGHV 207 (446)
T ss_pred CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH----cCCEEEEEeec
Confidence 78999999999886432211111122222333333333222 26777777653
No 294
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.56 E-value=6.8e-07 Score=70.46 Aligned_cols=108 Identities=20% Similarity=0.335 Sum_probs=58.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCce-------------EEEechhhcccccc---hHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANF-------------LKVVSSAIIDKYIG---ESARLIREMFGY 120 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~-------------~~v~~~~~~~~~~~---~~~~~~~~~f~~ 120 (241)
.+..+..++|.||+|+||||+++.++... |.++ ..+...+-...... .....+..++..
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~ 100 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEK 100 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHh
Confidence 34455789999999999999999998543 3221 00000000000000 111233444444
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT-LMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~-l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+...+|.++++||... +.+...... +..+++.+.. .+..+|++|++.+.
T Consensus 101 ~~~~~p~llllDEp~~----------glD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~ 150 (199)
T cd03283 101 AKKGEPVLFLLDEIFK----------GTNSRERQAASAAVLKFLKN----KNTIGIISTHDLEL 150 (199)
T ss_pred ccCCCCeEEEEecccC----------CCCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHH
Confidence 4334789999999533 234443333 3345555432 15678899988653
No 295
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.55 E-value=4.9e-07 Score=69.93 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=38.1
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..+.|+++++|| +.++.+-...+.+..++...+. .+..+|++|+.-+++
T Consensus 148 lvh~P~i~vlDE----------P~sGLDi~~~r~~~dfi~q~k~----egr~viFSSH~m~Ev 196 (245)
T COG4555 148 LVHDPSILVLDE----------PTSGLDIRTRRKFHDFIKQLKN----EGRAVIFSSHIMQEV 196 (245)
T ss_pred HhcCCCeEEEcC----------CCCCccHHHHHHHHHHHHHhhc----CCcEEEEecccHHHH
Confidence 348899999999 5677787788888888877543 377899999986654
No 296
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=7.1e-07 Score=71.03 Aligned_cols=110 Identities=24% Similarity=0.298 Sum_probs=69.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc-----------------------cc----c----
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-----------------------YI----G---- 108 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~-----------------------~~----~---- 108 (241)
++.+..+..+-|.|++|+|||||++.++....+.--.+.+.+-++. .. .
T Consensus 47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~ 126 (249)
T COG1134 47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE 126 (249)
T ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence 3345677889999999999999999999877444333222211110 00 0
Q ss_pred ----------------------hHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC
Q 026258 109 ----------------------ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 166 (241)
Q Consensus 109 ----------------------~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 166 (241)
+.-...+-.|+.+....|++|+|||+=.. .+...++.....+.++..
T Consensus 127 ~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav----------GD~~F~~K~~~rl~e~~~- 195 (249)
T COG1134 127 KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV----------GDAAFQEKCLERLNELVE- 195 (249)
T ss_pred HHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc----------CCHHHHHHHHHHHHHHHH-
Confidence 11122334455555678999999998555 366666666666666522
Q ss_pred CCCCCeEEEEEeCCCCC
Q 026258 167 DQLGKVKMIMATNRPDV 183 (241)
Q Consensus 167 ~~~~~~~vI~tt~~~~~ 183 (241)
++..+|+.+++...
T Consensus 196 ---~~~tiv~VSHd~~~ 209 (249)
T COG1134 196 ---KNKTIVLVSHDLGA 209 (249)
T ss_pred ---cCCEEEEEECCHHH
Confidence 14678888888543
No 297
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.54 E-value=3.3e-07 Score=72.73 Aligned_cols=49 Identities=22% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~ 186 (241)
..|.++++|| +....+......+..++.++.. .+..+|++|++.+.++.
T Consensus 144 ~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 144 SNRPIWILDE----------PTAALDAAAVALFAELIRAHLA----QGGIVIAATHIPLGLPG 192 (207)
T ss_pred cCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCchhhcc
Confidence 6789999999 4555677788888888876532 15678999998776654
No 298
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.54 E-value=4.8e-07 Score=77.44 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=59.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-ceEEEechhhcccccchH------HHHHHHHHHHHHhCCCeEEEEcCcc
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDA-NFLKVVSSAIIDKYIGES------ARLIREMFGYARDHQPCIIFMDEID 135 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~-~~~~v~~~~~~~~~~~~~------~~~~~~~f~~~~~~~~~vl~lDe~d 135 (241)
...+.+++|+|+.|+|||.|+..+...+.. .-.++....+....-... ...+..+.. .......+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~-~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVAD-ELAKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHH-HHHhcCCEEEEeeee
Confidence 356899999999999999999999988744 111121112211000000 001111111 122334599999986
Q ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 136 AIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
.- +..-...+.++++.+-. .++++|+|+|.+
T Consensus 138 V~-----------DiaDAmil~rLf~~l~~----~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALFK----RGVVLVATSNRP 168 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHHH----CCCEEEecCCCC
Confidence 65 33344555556655432 278999999975
No 299
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.53 E-value=1.2e-06 Score=68.70 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=67.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh--CCce--EEEechh-----------hcc----cccc-h----------
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DANF--LKVVSSA-----------IID----KYIG-E---------- 109 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l--~~~~--~~v~~~~-----------~~~----~~~~-~---------- 109 (241)
++.+.++..+.|.||+|+|||||++.++... ...- +.++... +.. .... .
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~ 108 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence 4456778899999999999999999999876 3210 1111000 000 0000 0
Q ss_pred -----HHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 110 -----SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 110 -----~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.....+-.+..+....|.++++||- ....+......+.+++..+.. .+..+|++|++..
T Consensus 109 ~~~LS~G~~qrv~laral~~~p~illlDEP----------~~~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 172 (194)
T cd03213 109 LRGLSGGERKRVSIALELVSNPSLLFLDEP----------TSGLDSSSALQVMSLLRRLAD----TGRTIICSIHQPS 172 (194)
T ss_pred hccCCHHHHHHHHHHHHHHcCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCch
Confidence 0111122344455578999999994 455677788888888877632 1567888888754
No 300
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.53 E-value=3.1e-07 Score=72.69 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=36.4
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
...|.++++|| +....+......+.+++.++.. .+..+|++|++.+.++
T Consensus 145 ~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 145 LTRAPLWILDE----------PFTAIDKQGVARLEALLAQHAE----QGGMVILTTHQDLPVA 193 (204)
T ss_pred hcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHH----CCCEEEEEecChhhhc
Confidence 37789999999 4555678888888888877632 1457889999877664
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.52 E-value=1.4e-06 Score=67.71 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=59.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc--------------------------c-----chHH---
Q 026258 69 VLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY--------------------------I-----GESA--- 111 (241)
Q Consensus 69 vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~--------------------------~-----~~~~--- 111 (241)
++|.||||||||+++..++... +..++.+......... . +...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887654 4555555432111000 0 0000
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 112 ~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
..+..+...+....|.++++|++..+... ........+..++..+... ++.+|++++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~~----g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKRF----GVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHHC----CCEEEEEecccc
Confidence 11233444455677899999999877431 1233334455555554332 567777776543
No 302
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=1.4e-06 Score=67.49 Aligned_cols=112 Identities=22% Similarity=0.327 Sum_probs=70.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEec---hhh----------c---cc----cc----------
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVS---SAI----------I---DK----YI---------- 107 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~---~~~----------~---~~----~~---------- 107 (241)
++.+.++..+.|.||+|+|||||++.++...... -+.++. ... . .+ ..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 4456778889999999999999999999765221 011110 000 0 00 00
Q ss_pred -chHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 108 -GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 108 -~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
-+.....+-.+..+....|.++++|| +....+......+.+++..+.. ..+..+|++|++.+.+
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDE----------P~~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 164 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDE----------PTSALDPITRREVRALLKSLQA---QLGITVVLVTHDLDEA 164 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 01112233445666678899999999 4555688888888888877642 1146788888876543
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.52 E-value=4.3e-07 Score=71.02 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999654
No 304
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.51 E-value=3.1e-07 Score=73.31 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=35.0
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+.+++..+.. .+..+|++||+.+.
T Consensus 155 ~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~ 200 (216)
T TIGR00960 155 HKPPLLLADE----------PTGNLDPELSRDIMRLFEEFNR----RGTTVLVATHDINL 200 (216)
T ss_pred cCCCEEEEeC----------CCCcCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 7789999999 5566688888888888877632 14678899998653
No 305
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.51 E-value=3.1e-07 Score=83.16 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEechhhcccccchH--HH
Q 026258 37 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAIIDKYIGES--AR 112 (241)
Q Consensus 37 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~~~~~~~~~~~--~~ 112 (241)
+++.+..+.-...+| ..-.+++|.|+.|+|||+++++++..+.. +|+.+..+.-....+|.. +.
T Consensus 8 ~~~~~~Al~l~av~p------------~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~ 75 (584)
T PRK13406 8 WADAALAAALLAVDP------------AGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAA 75 (584)
T ss_pred HHHHHHHHHHhCcCc------------cccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHh
Confidence 556666665554432 12257999999999999999999988754 777766554444444442 11
Q ss_pred HHHH---HH--HHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc------C--CCCCCCeEEEEEeC
Q 026258 113 LIRE---MF--GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD------G--FDQLGKVKMIMATN 179 (241)
Q Consensus 113 ~~~~---~f--~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI~tt~ 179 (241)
.++. .+ +.....+.+||||||++.+ ++..+..+.+.++.-. + +.-..++.+|++-|
T Consensus 76 ~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~ 144 (584)
T PRK13406 76 TLRAGRPVAQRGLLAEADGGVLVLAMAERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE 144 (584)
T ss_pred HhhcCCcCCCCCceeeccCCEEEecCcccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC
Confidence 1111 00 1122344579999999999 8888888888887521 1 11112567777633
Q ss_pred CC---CCCChhccCCCCcceEEEcCCCCHHH
Q 026258 180 RP---DVLDPALLRPGRLDRKIEIPLPNEQS 207 (241)
Q Consensus 180 ~~---~~l~~~l~~~~r~~~~i~l~~p~~~~ 207 (241)
.. ..+++++.+ ||+..+.++.++..+
T Consensus 145 ~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 145 GAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred ChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 22 348888998 999999998877643
No 306
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.51 E-value=7.2e-07 Score=80.02 Aligned_cols=108 Identities=26% Similarity=0.405 Sum_probs=69.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc----eEEEe------------------------------
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI-------DAN----FLKVV------------------------------ 98 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-------~~~----~~~v~------------------------------ 98 (241)
++.+.++..++|.|++|||||||.|++|+.. ++| ...+.
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 4567889999999999999999999999655 111 11111
Q ss_pred ------chhhcccc--------cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 99 ------SSAIIDKY--------IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 99 ------~~~~~~~~--------~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
...+.... .-+.....+-.|+...-++|.+++|||.- +..+++.+..+++++.+.
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT----------sALDe~~e~~l~q~l~~~- 561 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT----------SALDEETEDRLYQLLKEE- 561 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch----------hccChHHHHHHHHHHHhh-
Confidence 00000000 00111233445666667999999999963 345788888888888742
Q ss_pred CCCCCCCeEEEEEeCCCC
Q 026258 165 GFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~ 182 (241)
-+.+.+|-.++.+.
T Consensus 562 ----lp~~tvISV~Hr~t 575 (604)
T COG4178 562 ----LPDATVISVGHRPT 575 (604)
T ss_pred ----CCCCEEEEeccchh
Confidence 13677888887754
No 307
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.51 E-value=4.1e-07 Score=76.54 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=37.4
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....|.+|++|| +..+.+......+..++.++.. .+..+|++||+.+.
T Consensus 153 L~~~P~lllLDE----------Pt~gLD~~~~~~l~~~l~~l~~----~g~till~sH~l~e 200 (306)
T PRK13537 153 LVNDPDVLVLDE----------PTTGLDPQARHLMWERLRSLLA----RGKTILLTTHFMEE 200 (306)
T ss_pred HhCCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 347899999999 6677788888899888887642 25688999987653
No 308
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.50 E-value=1.1e-06 Score=85.45 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=93.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc----------cccchHHHHHHHHHHHHHhCCCeEEEEcC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID----------KYIGESARLIREMFGYARDHQPCIIFMDE 133 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~----------~~~~~~~~~~~~~f~~~~~~~~~vl~lDe 133 (241)
....++||.||+-||||++...+|++.+-.|++++-.+.-. ...|+.+- -..++-.|.+.. .+|++||
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsF-kEGvLVeAlR~G-yWIVLDE 963 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSF-KEGVLVEALRRG-YWIVLDE 963 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceee-ehhHHHHHHhcC-cEEEeec
Confidence 44678999999999999999999999999999998544321 11111110 112222333333 5999999
Q ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHhcCC---------CCCCCeEEEEEeCCCC------CCChhccCCCCcceEE
Q 026258 134 IDAIGGRRFSEGTSADREIQRTLMELLNQLDGF---------DQLGKVKMIMATNRPD------VLDPALLRPGRLDRKI 198 (241)
Q Consensus 134 ~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---------~~~~~~~vI~tt~~~~------~l~~~l~~~~r~~~~i 198 (241)
++.. ......+++++++.-... .+.+++.+.+|-|+|. .+..+++. || .++
T Consensus 964 LNLA-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~ 1029 (4600)
T COG5271 964 LNLA-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEM 1029 (4600)
T ss_pred cccC-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhh
Confidence 9877 567788899998754322 2333555555555552 47888988 99 556
Q ss_pred EcCCCCHHHHHHHHHHhHc
Q 026258 199 EIPLPNEQSRMEILKIHAA 217 (241)
Q Consensus 199 ~l~~p~~~~r~~il~~~~~ 217 (241)
.|..-.+++...|++.+++
T Consensus 1030 hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1030 HFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred hcccCcHHHHHHHHhccCc
Confidence 7766667788888886663
No 309
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.50 E-value=1.1e-06 Score=68.27 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=67.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEec---hh------------hccc-------cc-chHHHH-
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVS---SA------------IIDK-------YI-GESARL- 113 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~---~~------------~~~~-------~~-~~~~~~- 113 (241)
++.+.++..+.|.|++|+|||||++.++...... -+.++. .. +..+ .. ......
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence 4456778889999999999999999999765211 011110 00 0000 00 011111
Q ss_pred -----------HHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 114 -----------IREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 114 -----------~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+-.+..+....|.++++|| +....+......+.+++..+.. .+..+|++|++.+
T Consensus 100 ~~~~~LS~G~~qrl~la~al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 165 (182)
T cd03215 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDE----------PTRGVDVGAKAEIYRLIRELAD----AGKAVLLISSELD 165 (182)
T ss_pred HHHhhcCHHHHHHHHHHHHHccCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 12234445557899999999 4555678888888888877642 1467888888754
Q ss_pred C
Q 026258 183 V 183 (241)
Q Consensus 183 ~ 183 (241)
.
T Consensus 166 ~ 166 (182)
T cd03215 166 E 166 (182)
T ss_pred H
Confidence 3
No 310
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.50 E-value=3.9e-07 Score=76.56 Aligned_cols=46 Identities=26% Similarity=0.489 Sum_probs=35.9
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +..+.++.....+..++..+.. .+..+|++||+.+
T Consensus 140 ~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~~~----~g~tvi~~sH~~~ 185 (302)
T TIGR01188 140 IHQPDVLFLDE----------PTTGLDPRTRRAIWDYIRALKE----EGVTILLTTHYME 185 (302)
T ss_pred hcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHH
Confidence 37889999999 5666788888888888887642 1567888988764
No 311
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.50 E-value=1.5e-06 Score=68.72 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=56.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh-----CCce--------------EEEechhhcccccchHHHHHHHHHHH-HH
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNI-----DANF--------------LKVVSSAIIDKYIGESARLIREMFGY-AR 122 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~--------------~~v~~~~~~~~~~~~~~~~~~~~f~~-~~ 122 (241)
+..+..++|.||+|+||||++++++... +..+ ..+..........+.....++++-.. ..
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~ 105 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSL 105 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHh
Confidence 3445679999999999999999999322 2111 11111111111222222223332221 22
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.++++||...- .++.....+ ..++..+... +..+|++|++.+
T Consensus 106 ~~~~~llllDEp~~g----------ld~~~~~~l~~~ll~~l~~~----~~~vi~~tH~~~ 152 (202)
T cd03243 106 ATPRSLVLIDELGRG----------TSTAEGLAIAYAVLEHLLEK----GCRTLFATHFHE 152 (202)
T ss_pred ccCCeEEEEecCCCC----------CCHHHHHHHHHHHHHHHHhc----CCeEEEECChHH
Confidence 357899999996432 344433333 3444444321 567888888754
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.49 E-value=2.3e-06 Score=67.18 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456778899999999999999999999765
No 313
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.48 E-value=4.9e-07 Score=71.39 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=36.2
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
....|.++++|| +....+......+.+++..+.. .+..+|++|+++..+.
T Consensus 140 l~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~g~tiii~sH~~~~~~ 189 (201)
T cd03231 140 LLSGRPLWILDE----------PTTALDKAGVARFAEAMAGHCA----RGGMVVLTTHQDLGLS 189 (201)
T ss_pred HhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCchhhh
Confidence 337789999999 4555678888888888876532 1457888998876554
No 314
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.48 E-value=3.8e-07 Score=64.56 Aligned_cols=23 Identities=43% Similarity=0.959 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 026258 69 VLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 69 vll~G~~GsGKTtl~~~la~~l~ 91 (241)
|.|+|+||+|||++++.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 315
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.48 E-value=3.6e-06 Score=67.70 Aligned_cols=134 Identities=16% Similarity=0.283 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhhcccc--------------cchHHHHHH---H-HHHHHH-
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKY--------------IGESARLIR---E-MFGYAR- 122 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~~~~~--------------~~~~~~~~~---~-~f~~~~- 122 (241)
..+..+++.|++|||||++++.+...+... .+.+-++.....+ ..+.+..+. . +-...+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 445689999999999999999998766332 2222222111100 001111111 1 111111
Q ss_pred --h---CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceE
Q 026258 123 --D---HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRK 197 (241)
Q Consensus 123 --~---~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~ 197 (241)
. ..+.+|++||+.. .....+.+..++..-. .-++.+|++++....+++.++. -....
T Consensus 91 ~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEE
Confidence 1 2367999999732 1112234555554322 2378999999999999999877 55555
Q ss_pred EEcCCCCHHHHHHHHHHhH
Q 026258 198 IEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 198 i~l~~p~~~~r~~il~~~~ 216 (241)
+-++ .+......|++.+.
T Consensus 153 i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred EEec-CcHHHHHHHHHhcc
Confidence 5554 56777777766554
No 316
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.48 E-value=4.9e-07 Score=71.56 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=35.3
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.++++|| +....+......+.+++..+.. .+..+|++|++++.
T Consensus 142 ~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~sH~~~~ 188 (205)
T cd03226 142 LSGKDLLIFDE----------PTSGLDYKNMERVGELIRELAA----QGKAVIVITHDYEF 188 (205)
T ss_pred HhCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 37789999999 4556688888888888877632 14678889988654
No 317
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.48 E-value=3.5e-07 Score=78.84 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++++|...
T Consensus 34 sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556778899999999999999999999755
No 318
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.48 E-value=4.2e-07 Score=72.47 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=27.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4556788899999999999999999999754
No 319
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=4.6e-07 Score=74.31 Aligned_cols=31 Identities=42% Similarity=0.542 Sum_probs=26.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+..+.-+.|.||+|+||||+++.||...
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 4456777889999999999999999999654
No 320
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.48 E-value=4.9e-07 Score=71.99 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456778889999999999999999999765
No 321
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.47 E-value=5.6e-07 Score=73.52 Aligned_cols=72 Identities=31% Similarity=0.614 Sum_probs=55.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHH------HHhCCceEEEechhhcccccchHHHHHHHHHHHHHh-----------
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIA------SNIDANFLKVVSSAIIDKYIGESARLIREMFGYARD----------- 123 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la------~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----------- 123 (241)
..+.....+|+.||.|.|||.|++.+. +++...|++++|..+... ..+..+|++++.
T Consensus 203 va~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd------~amsalfghvkgaftga~~~r~g 276 (531)
T COG4650 203 VAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD------TAMSALFGHVKGAFTGARESREG 276 (531)
T ss_pred HHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc------hHHHHHHhhhccccccchhhhhh
Confidence 345566789999999999999999986 455889999999987543 233455665543
Q ss_pred ----CCCeEEEEcCccccc
Q 026258 124 ----HQPCIIFMDEIDAIG 138 (241)
Q Consensus 124 ----~~~~vl~lDe~d~l~ 138 (241)
...++||+||+..++
T Consensus 277 llrsadggmlfldeigelg 295 (531)
T COG4650 277 LLRSADGGMLFLDEIGELG 295 (531)
T ss_pred hhccCCCceEehHhhhhcC
Confidence 456799999999884
No 322
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.47 E-value=4.7e-07 Score=72.32 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=34.8
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+.+++..+.. .+..+|++|++.+.
T Consensus 153 ~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~ 198 (218)
T cd03266 153 HDPPVLLLDE----------PTTGLDVMATRALREFIRQLRA----LGKCILFSTHIMQE 198 (218)
T ss_pred cCCCEEEEcC----------CCcCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 7789999999 4555688888888888877642 14678899988653
No 323
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.47 E-value=4.2e-07 Score=72.61 Aligned_cols=48 Identities=29% Similarity=0.513 Sum_probs=35.5
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.+|++|| +....+......+.+++..+.. ..+..+|++|++.+.+
T Consensus 157 ~~p~lllLDE----------P~~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~~ 204 (218)
T cd03255 157 NDPKIILADE----------PTGNLDSETGKEVMELLRELNK---EAGTTIVVVTHDPELA 204 (218)
T ss_pred cCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHHH
Confidence 7789999999 4556688888888888877632 1256799999986543
No 324
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.47 E-value=3e-06 Score=68.36 Aligned_cols=109 Identities=17% Similarity=0.330 Sum_probs=60.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc-------------------------------c
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY-------------------------------I 107 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~-------------------------------~ 107 (241)
|+.++..+++.|++|||||+++..++... +..++++......... .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 56778899999999999999975554433 4444444422111000 0
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 108 GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 108 ~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
......+..+...+....|.++++|++-.+... ..++...+.+.+++..+... +..++++++.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~~----g~tvi~t~~~ 162 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISSL----NKVIILTANP 162 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHhC----CCEEEEEecc
Confidence 011233334444444457899999999776421 11333345555666555321 3456666553
No 325
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.47 E-value=7.1e-06 Score=69.24 Aligned_cols=160 Identities=20% Similarity=0.225 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccc------
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY------ 106 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~------ 106 (241)
.+.+.+.+++.+...+-.- -. .-+.++.|+|.+|||||.+++.+.+..+.+.+.++|-+..+-.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---------~~-~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---------SC-TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCCC---------Cc-ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 5778999999998887431 11 2356789999999999999999999999988888876554311
Q ss_pred ---------cchH-------HHHHHHHHHH--HHhC--CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC
Q 026258 107 ---------IGES-------ARLIREMFGY--ARDH--QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF 166 (241)
Q Consensus 107 ---------~~~~-------~~~~~~~f~~--~~~~--~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 166 (241)
.+.. -......|.. +... ..-+|++|.+|.+-. .+......+.++-+.++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~~-- 146 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYELLN-- 146 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHhC--
Confidence 1110 0111112222 1112 245899999999932 23334444444443332
Q ss_pred CCCCCeEEEEEeCCCCCCChhccCCC-CcceEEEcCCCCHHHHHHHHHHhH
Q 026258 167 DQLGKVKMIMATNRPDVLDPALLRPG-RLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 167 ~~~~~~~vI~tt~~~~~l~~~l~~~~-r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
.+.+.+|++....+..- ..+.+ .--.++.||.|+.++...|+.+--
T Consensus 147 --~~~i~iils~~~~e~~y--~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 147 --EPTIVIILSAPSCEKQY--LINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred --CCceEEEEeccccHHHh--hcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 23566666655433211 11111 222467899999999999987433
No 326
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=3.6e-07 Score=73.17 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++|| +....+......+.+++.++.. ..+..+|++||+++.
T Consensus 148 ~~p~lllLDE----------Pt~~LD~~~~~~~~~~l~~~~~---~~~~tiii~sH~~~~ 194 (220)
T cd03293 148 VDPDVLLLDE----------PFSALDALTREQLQEELLDIWR---ETGKTVLLVTHDIDE 194 (220)
T ss_pred cCCCEEEECC----------CCCCCCHHHHHHHHHHHHHHHH---HcCCEEEEEecCHHH
Confidence 6789999999 4566688888888888876521 114678889988653
No 327
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.47 E-value=2e-06 Score=72.28 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc----------------cccchHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID----------------KYIGESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~f~~~~ 122 (241)
|+..+..+.|+||||||||+|+..++... +..+++++...... ..+...+..+..+-..+.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 57778889999999999999999887544 66677776533211 111122233333333345
Q ss_pred hCCCeEEEEcCcccccCC
Q 026258 123 DHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~ 140 (241)
...++++++|-+..+...
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999988753
No 328
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.47 E-value=2.7e-06 Score=67.13 Aligned_cols=106 Identities=13% Similarity=0.216 Sum_probs=57.9
Q ss_pred CCCCC-ceEEEEcCCCChHHHHHHHHHHHh-----CCceE---------------EEechhhcccccchHHHHHHHHHHH
Q 026258 62 GIKPP-KGVLLYGPPGTGKTLLARAIASNI-----DANFL---------------KVVSSAIIDKYIGESARLIREMFGY 120 (241)
Q Consensus 62 ~~~~~-~~vll~G~~GsGKTtl~~~la~~l-----~~~~~---------------~v~~~~~~~~~~~~~~~~~~~~f~~ 120 (241)
.+..+ +.++|.||+|+||||+++.++... +..+- .+................+++....
T Consensus 23 ~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i 102 (200)
T cd03280 23 QLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARI 102 (200)
T ss_pred EECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHH
Confidence 34445 369999999999999999998211 21110 0111111111222233333343333
Q ss_pred HH-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 121 AR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 121 ~~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
+. ...|.++++||...- .+......+ ..++..+.. .+..+|++|++.
T Consensus 103 ~~~~~~p~llllDEp~~g----------lD~~~~~~i~~~~l~~l~~----~~~~vi~~tH~~ 151 (200)
T cd03280 103 LQHADPDSLVLLDELGSG----------TDPVEGAALAIAILEELLE----RGALVIATTHYG 151 (200)
T ss_pred HHhCCCCcEEEEcCCCCC----------CCHHHHHHHHHHHHHHHHh----cCCEEEEECCHH
Confidence 22 356899999996433 355554444 345555432 146788888863
No 329
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=3.9e-07 Score=78.13 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 4456777889999999999999999999765
No 330
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.46 E-value=1.8e-06 Score=72.47 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=52.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc----------------cccchHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID----------------KYIGESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~f~~~~ 122 (241)
|+.++..+.|+||||||||+|+..++... +..+++++...... ..+...+..+..+...+.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 57788889999999999999988776544 55666666533221 111122333333334445
Q ss_pred hCCCeEEEEcCcccccCC
Q 026258 123 DHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~ 140 (241)
...++++++|-+..+...
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999988753
No 331
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.46 E-value=6.2e-07 Score=72.33 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=35.0
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+..++.++.. .+..+|++|++++.
T Consensus 150 ~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~ 195 (232)
T cd03218 150 TNPKFLLLDE----------PFAGVDPIAVQDIQKIIKILKD----RGIGVLITDHNVRE 195 (232)
T ss_pred cCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 7789999999 5556688888888888877642 14678899998653
No 332
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=6.3e-07 Score=70.68 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456788899999999999999999999765
No 333
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.46 E-value=4.7e-07 Score=72.10 Aligned_cols=31 Identities=39% Similarity=0.463 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 334
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.45 E-value=6.5e-07 Score=76.31 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=37.2
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.+|++|| +..+.++.....+..++.++.. .+..+|++||+.+.
T Consensus 188 ~~~P~lLiLDE----------Pt~gLD~~~r~~l~~~l~~l~~----~g~tilisSH~l~e 234 (340)
T PRK13536 188 INDPQLLILDE----------PTTGLDPHARHLIWERLRSLLA----RGKTILLTTHFMEE 234 (340)
T ss_pred hcCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 37899999999 5677789999999998887743 15678999987653
No 335
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.45 E-value=1.1e-06 Score=81.19 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=38.1
Q ss_pred HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 117 MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 117 ~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
.++.+.-.+|.||++||. ++..|.+..+.+.+-+.++.. +..+|++||++..
T Consensus 619 alARaLl~~P~ILlLDEa----------TSaLD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t 670 (709)
T COG2274 619 ALARALLSKPKILLLDEA----------TSALDPETEAIILQNLLQILQ-----GRTVIIIAHRLST 670 (709)
T ss_pred HHHHHhccCCCEEEEeCc----------ccccCHhHHHHHHHHHHHHhc-----CCeEEEEEccchH
Confidence 344455588999999995 455678888888877776643 5788889998653
No 336
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.45 E-value=8.6e-07 Score=69.81 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 337
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=5e-07 Score=71.92 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 338
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=6.6e-07 Score=71.07 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 339
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.45 E-value=5.6e-07 Score=71.37 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=34.4
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++|| +....+......+..++.++.. .+..+|++|++.+.
T Consensus 143 ~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~ 188 (208)
T cd03268 143 GNPDLLILDE----------PTNGLDPDGIKELRELILSLRD----QGITVLISSHLLSE 188 (208)
T ss_pred cCCCEEEECC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHH
Confidence 7789999999 4556678888888888877642 14578888888653
No 340
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.44 E-value=4.9e-07 Score=77.45 Aligned_cols=31 Identities=42% Similarity=0.512 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.++...
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4456678889999999999999999999765
No 341
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.44 E-value=1.1e-06 Score=70.50 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=32.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEech
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~ 100 (241)
|+..+..++|+|+||+|||+++..++... +..++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67778889999999999999999998755 6677777765
No 342
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.44 E-value=7.2e-07 Score=70.98 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 343
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=3.4e-06 Score=66.12 Aligned_cols=108 Identities=19% Similarity=0.321 Sum_probs=65.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEechh----------hccc----ccc-hH---------
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSA----------IIDK----YIG-ES--------- 110 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~~~~----------~~~~----~~~-~~--------- 110 (241)
++.+.++..+.|.||+|+|||||++.++... ...+ .++... +..+ ... ..
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i-~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL 105 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-EECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHH
Confidence 3456778889999999999999999999642 1111 111000 0000 000 00
Q ss_pred ------HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 111 ------ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 111 ------~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
....+-.+..+....|.++++||- ....+......+.+++..+.. .+..+|++|++++
T Consensus 106 ~~~LSgGe~qrv~la~al~~~p~vlllDEP----------~~~LD~~~~~~l~~~l~~~~~----~~~tiiivtH~~~ 169 (192)
T cd03232 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEP----------TSGLDSQAAYNIVRFLKKLAD----SGQAILCTIHQPS 169 (192)
T ss_pred HhcCCHHHhHHHHHHHHHhcCCcEEEEeCC----------CcCCCHHHHHHHHHHHHHHHH----cCCEEEEEEcCCh
Confidence 111122244455578999999994 455577778888888876642 1467888888854
No 344
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.43 E-value=8.2e-07 Score=71.86 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=69.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceE--EEechhh-------------------------cccccchHHH
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFL--KVVSSAI-------------------------IDKYIGESAR 112 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~--~v~~~~~-------------------------~~~~~~~~~~ 112 (241)
++.+..+..+.|.|++||||||+.+.+.+......- .++..++ ...++.+.+.
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 455778899999999999999999999977743321 1111111 1112222222
Q ss_pred HHHH--HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 113 LIRE--MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 113 ~~~~--~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
..++ .++.+..-.|.+++.||.-.. .+-..+..+.+++..++.. -+...++++++..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSa----------LDvSiqaqIlnLL~dlq~~---~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSA----------LDVSVQAQILNLLKDLQEE---LGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhh----------cchhHHHHHHHHHHHHHHH---hCCeEEEEEEEHH
Confidence 2223 344455678999999996555 3566667777777665432 2677888888753
No 345
>PHA00729 NTP-binding motif containing protein
Probab=98.43 E-value=7e-07 Score=71.04 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+++|+|+|||||||+|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 346
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.43 E-value=2.8e-06 Score=69.90 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=59.5
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---ceEEEe------
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVV------ 98 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~---~~~~v~------ 98 (241)
..+++++.-..+..+.+.+.+. .....++|.|++||||||+++++...+.. .++.+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4567777656666666766653 23456999999999999999999877632 233332
Q ss_pred chhhcc-cccchHHHHHHHHHHHHHhCCCeEEEEcCcc
Q 026258 99 SSAIID-KYIGESARLIREMFGYARDHQPCIIFMDEID 135 (241)
Q Consensus 99 ~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d 135 (241)
...... .........+......+.+..|++++++|+.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 111100 0011111234566667778899999999983
No 347
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.43 E-value=8.3e-07 Score=70.55 Aligned_cols=46 Identities=30% Similarity=0.468 Sum_probs=34.9
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++|| +....+......+.+++..+.. . +..+|++|++.+.
T Consensus 151 ~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~---~-~~tvi~~sH~~~~ 196 (211)
T cd03225 151 MDPDILLLDE----------PTAGLDPAGRRELLELLKKLKA---E-GKTIIIVTHDLDL 196 (211)
T ss_pred cCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHH
Confidence 6788999999 4556688888888888877642 1 4678999998653
No 348
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.43 E-value=7.7e-07 Score=71.20 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=34.9
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.++++|| +....+......+..++..+.. +..+|++|++++.+
T Consensus 150 ~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tii~~sH~~~~~ 195 (220)
T cd03263 150 GGPSVLLLDE----------PTSGLDPASRRAIWDLILEVRK-----GRSIILTTHSMDEA 195 (220)
T ss_pred cCCCEEEECC----------CCCCCCHHHHHHHHHHHHHHhc-----CCEEEEEcCCHHHH
Confidence 7789999999 4555678888888888877642 36788999986543
No 349
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=7.8e-07 Score=71.22 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 350
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.43 E-value=5.8e-07 Score=72.74 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=35.8
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
...|.++++|| +..+.+......+.+++..+.. ..+..+|++|++.+.+
T Consensus 148 ~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 148 LHRPALLLLDE----------PTVGLDPASRAAIVAHVRALCR---DQGLSVLWATHLVDEI 196 (236)
T ss_pred hcCCCEEEEcC----------CccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEecChhhH
Confidence 37789999999 4556688888888888876531 1146788899887655
No 351
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=5.6e-07 Score=77.00 Aligned_cols=31 Identities=39% Similarity=0.486 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.++...
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 4556778899999999999999999999765
No 352
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.42 E-value=6.9e-07 Score=71.17 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 353
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.3e-05 Score=62.68 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=90.8
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhC---------CceEEEechhhc---ccccchHHHHHHHHHHH----HHhCCCeE
Q 026258 66 PKGVLLYGPPG-TGKTLLARAIASNID---------ANFLKVVSSAII---DKYIGESARLIREMFGY----ARDHQPCI 128 (241)
Q Consensus 66 ~~~vll~G~~G-sGKTtl~~~la~~l~---------~~~~~v~~~~~~---~~~~~~~~~~~~~~f~~----~~~~~~~v 128 (241)
.+.+||.|..+ +||..++..+++.+. ..++.+....-. +... ....++.+... .......|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence 46799999998 999999988887762 234444321100 0111 12223333222 23345679
Q ss_pred EEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHH
Q 026258 129 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 208 (241)
Q Consensus 129 l~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r 208 (241)
++|+++|.+ .......+...+++ +.+++.+|++|+++..+.+.++| || ..+.++.|+...-
T Consensus 93 iII~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~ 153 (263)
T PRK06581 93 AIIYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAY 153 (263)
T ss_pred EEEechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHH
Confidence 999999999 66666677666664 44578889999999999999999 99 7789999998777
Q ss_pred HHHHHHhHcCcc
Q 026258 209 MEILKIHAAGIA 220 (241)
Q Consensus 209 ~~il~~~~~~~~ 220 (241)
.+.+........
T Consensus 154 ~e~~~~~~~p~~ 165 (263)
T PRK06581 154 NELYSQFIQPIA 165 (263)
T ss_pred HHHHHHhccccc
Confidence 777665554443
No 354
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.41 E-value=8.4e-07 Score=72.99 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+++|.||+|+||||+++.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998873
No 355
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.41 E-value=6.3e-07 Score=76.39 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=36.1
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.+|++||. .+..+......+..++..+.. ..+..+|++||+.+.
T Consensus 156 ~~~P~iLLlDEP----------ts~LD~~t~~~i~~lL~~l~~---~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 156 ASNPKVLLCDEA----------TSALDPATTQSILELLKEINR---RLGLTILLITHEMDV 203 (343)
T ss_pred HhCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 377999999994 555688888888888887642 125789999998653
No 356
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.41 E-value=3.6e-06 Score=66.38 Aligned_cols=110 Identities=21% Similarity=0.242 Sum_probs=67.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh--CC--ceEEEechhh----------------------cc---------
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DA--NFLKVVSSAI----------------------ID--------- 104 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l--~~--~~~~v~~~~~----------------------~~--------- 104 (241)
++.+.++..+.|.|++|+|||||++.++... .. --+.++...+ ..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence 4456788899999999999999999999862 11 0111111000 00
Q ss_pred cccchH--HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 105 KYIGES--ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 105 ~~~~~~--~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...... ....+-.+..+....|.++++|| +....+......+.+++..+.. .+..+|++|++.+
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~L~~~~~----~~~tiii~sh~~~ 165 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDE----------PDSGLDIDALRLVAEVINKLRE----EGKSVLIITHYQR 165 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 000011 11122334445567899999999 4555677778888888876632 1467888888865
Q ss_pred C
Q 026258 183 V 183 (241)
Q Consensus 183 ~ 183 (241)
.
T Consensus 166 ~ 166 (200)
T cd03217 166 L 166 (200)
T ss_pred H
Confidence 3
No 357
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=7.2e-07 Score=70.91 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=35.3
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.++++|| +....+......+.+++..+.. +..+|++|++.+.
T Consensus 146 ~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~vsH~~~~ 191 (211)
T cd03264 146 VGDPSILIVDE----------PTAGLDPEERIRFRNLLSELGE-----DRIVILSTHIVED 191 (211)
T ss_pred hcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHhC-----CCEEEEEcCCHHH
Confidence 37789999999 5566688888888888887642 2578888887654
No 358
>PRK10908 cell division protein FtsE; Provisional
Probab=98.41 E-value=8.5e-07 Score=71.09 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 359
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=1.9e-06 Score=69.42 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=37.4
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
...|.+|++|| ++...++.....+.+++.++.. ..+..+|.+||+.+.+
T Consensus 154 a~~P~iliLDE----------Pta~LD~~~~~~l~~~l~~L~~---~~~~tii~~tHd~~~~ 202 (235)
T COG1122 154 AMGPEILLLDE----------PTAGLDPKGRRELLELLKKLKE---EGGKTIIIVTHDLELV 202 (235)
T ss_pred HcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHHHh---cCCCeEEEEeCcHHHH
Confidence 37789999999 5666788888888888887743 2356789999886543
No 360
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.40 E-value=7e-07 Score=77.11 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++++|...
T Consensus 39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556778889999999999999999999655
No 361
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.40 E-value=5.4e-07 Score=75.65 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=35.3
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +..+.+......+..++..+.. +..+|++|++.+
T Consensus 149 ~~~p~lliLDE----------Pt~gLD~~~~~~l~~~l~~~~~-----~~tiii~sH~l~ 193 (301)
T TIGR03522 149 IHDPKVLILDE----------PTTGLDPNQLVEIRNVIKNIGK-----DKTIILSTHIMQ 193 (301)
T ss_pred hcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHhcC-----CCEEEEEcCCHH
Confidence 37899999999 5666788888888888887642 367888888765
No 362
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.40 E-value=7.2e-07 Score=74.95 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=36.0
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.+|++|| +..+.+......+..++..+.. .+..+|++||+.+.
T Consensus 151 ~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~~~----~g~til~~sH~~~~ 197 (303)
T TIGR01288 151 INDPQLLILDE----------PTTGLDPHARHLIWERLRSLLA----RGKTILLTTHFMEE 197 (303)
T ss_pred hcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 37789999999 5666788888888888887642 15678899887653
No 363
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.39 E-value=3.4e-06 Score=66.76 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445678889999999999999999999765
No 364
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=6.1e-07 Score=73.55 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778899999999999999999999765
No 365
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.39 E-value=1.5e-06 Score=70.81 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=34.5
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....|.++++||- ....+......+..++..+.. ..+..+|++||+.+.
T Consensus 130 L~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~~---~~~~tiiivsHd~~~ 178 (246)
T cd03237 130 LSKDADIYLLDEP----------SAYLDVEQRLMASKVIRRFAE---NNEKTAFVVEHDIIM 178 (246)
T ss_pred HhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 3477899999994 455577777788777776532 124678999988653
No 366
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.39 E-value=9.8e-07 Score=72.37 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456778899999999999999999999765
No 367
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.39 E-value=7.4e-07 Score=76.84 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.++...
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 368
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.38 E-value=4.3e-06 Score=67.14 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788899999999999999999999765
No 369
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.38 E-value=8.5e-07 Score=72.50 Aligned_cols=31 Identities=35% Similarity=0.622 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++..+
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556788899999999999999999999765
No 370
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.38 E-value=9.8e-07 Score=75.73 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred EEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4456788899999999999999999999766
No 371
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=3.9e-06 Score=66.34 Aligned_cols=71 Identities=28% Similarity=0.336 Sum_probs=43.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--------CceEEEech-hhcccccch---H----------HHHHHHHHHHHHhC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNID--------ANFLKVVSS-AIIDKYIGE---S----------ARLIREMFGYARDH 124 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~--------~~~~~v~~~-~~~~~~~~~---~----------~~~~~~~f~~~~~~ 124 (241)
.+.|+.|||||||||+++-+|+.+. ..+..++.. ++..-..+. . .-.-.-+...+..+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 4689999999999999999998772 123334322 111110000 0 00111233345668
Q ss_pred CCeEEEEcCcccc
Q 026258 125 QPCIIFMDEIDAI 137 (241)
Q Consensus 125 ~~~vl~lDe~d~l 137 (241)
.|.|+++||+...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 8999999999665
No 372
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.37 E-value=6e-06 Score=72.97 Aligned_cols=116 Identities=18% Similarity=0.296 Sum_probs=66.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccccc------ch--------HHHHHHHHHHHHHhC
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI------GE--------SARLIREMFGYARDH 124 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~------~~--------~~~~~~~~f~~~~~~ 124 (241)
|+.++.-++|.|+||+|||||+..++..+ +..++++...+...+.. +- .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67888889999999999999999998765 34566666432221110 00 011233444445567
Q ss_pred CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 125 ~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
.|.+++||.+..+.........+...+....+..+....+. .++.++++++..
T Consensus 170 ~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~----~giTvllt~hvt 222 (454)
T TIGR00416 170 NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT----RGIAIFIVGHVT 222 (454)
T ss_pred CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH----hCCEEEEEeccc
Confidence 78999999999885432111111112222333333332222 267788877643
No 373
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.37 E-value=3.7e-07 Score=65.87 Aligned_cols=31 Identities=29% Similarity=0.682 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 69 vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
++|.|+|||||||+++.+++.++..++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999887766653
No 374
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=1.1e-06 Score=70.85 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 375
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.36 E-value=1.4e-06 Score=65.84 Aligned_cols=53 Identities=23% Similarity=0.389 Sum_probs=36.2
Q ss_pred HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 117 MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 117 ~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.+..+...+|.|||-|| ++...+......+..++-.+ .+..+..+|+.|+++.
T Consensus 156 AiARAfa~~P~vLfADE----------PTGNLD~~Tg~~iaDLlF~l---nre~G~TlVlVTHD~~ 208 (228)
T COG4181 156 ALARAFAGRPDVLFADE----------PTGNLDRATGDKIADLLFAL---NRERGTTLVLVTHDPQ 208 (228)
T ss_pred HHHHHhcCCCCEEeccC----------CCCCcchhHHHHHHHHHHHH---hhhcCceEEEEeCCHH
Confidence 34556668899999999 55666766666666655443 2233788999999753
No 376
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.36 E-value=1e-06 Score=70.53 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 377
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.36 E-value=3.1e-06 Score=66.69 Aligned_cols=67 Identities=24% Similarity=0.414 Sum_probs=41.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----ceEEEech-hh--------ccc-ccchHHHHHHHHHHHHHhCCCeEEEEcC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDA----NFLKVVSS-AI--------IDK-YIGESARLIREMFGYARDHQPCIIFMDE 133 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~----~~~~v~~~-~~--------~~~-~~~~~~~~~~~~f~~~~~~~~~vl~lDe 133 (241)
.++|.||+||||||++++++..+.. .++.+..+ ++ ..+ ..+.....+...+..+....|+++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 5899999999999999999887742 22322211 11 000 0111112344555666677899999999
Q ss_pred c
Q 026258 134 I 134 (241)
Q Consensus 134 ~ 134 (241)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 378
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=1e-06 Score=75.26 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=35.7
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.+|++|| +....+......+..++..+.. ..+..+|++|++.+.
T Consensus 156 ~~~p~iLlLDE----------Pts~LD~~~~~~l~~~L~~l~~---~~g~tiilvtH~~~~ 203 (343)
T PRK11153 156 ASNPKVLLCDE----------ATSALDPATTRSILELLKDINR---ELGLTIVLITHEMDV 203 (343)
T ss_pred HcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 37789999999 4556688888888888877632 125678999988653
No 379
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=1e-06 Score=71.18 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.+|++|| +....+......+.+++..+.. ..+..+|++|++.+.+
T Consensus 162 ~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 162 NNPRLVLADE----------PTGNLDARNADSIFQLLGELNR---LQGTAFLVVTHDLQLA 209 (233)
T ss_pred cCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHHHH
Confidence 7789999999 4555678888888888876631 1256789999986543
No 380
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.35 E-value=1.4e-06 Score=75.72 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+....|.+|++|| +....+...+..+.+++..+.. .+..+|+++|+.+.
T Consensus 153 AL~~~P~iLLLDE----------PtsgLD~~~~~~l~~lL~~l~~----~g~TIIivsHdl~~ 201 (402)
T PRK09536 153 ALAQATPVLLLDE----------PTASLDINHQVRTLELVRRLVD----DGKTAVAAIHDLDL 201 (402)
T ss_pred HHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEECCHHH
Confidence 3447899999999 5666688888888888887742 14678999988653
No 381
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.35 E-value=5.9e-06 Score=66.25 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=35.4
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.++++|| +..+.+......+.+++..+.. .+..+|++|++++.
T Consensus 140 ~~~p~llllDE----------P~~~LD~~~~~~l~~~L~~~~~----~~~tiii~sH~~~~ 186 (223)
T TIGR03740 140 LNHPKLLILDE----------PTNGLDPIGIQELRELIRSFPE----QGITVILSSHILSE 186 (223)
T ss_pred hcCCCEEEECC----------CccCCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHH
Confidence 37789999999 4556688888888888877642 14678889988654
No 382
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=1.2e-06 Score=72.38 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556788899999999999999999999765
No 383
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.34 E-value=5.1e-06 Score=68.41 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4456788889999999999999999999875
No 384
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=1.3e-06 Score=72.58 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=35.8
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.+|++|| +..+.+......+.+++..+.. ..+..+|++|++.+.+
T Consensus 157 ~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~l~~---~~~~tilivsH~~~~~ 204 (279)
T PRK13635 157 LQPDIIILDE----------ATSMLDPRGRREVLETVRQLKE---QKGITVLSITHDLDEA 204 (279)
T ss_pred cCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---cCCCEEEEEecCHHHH
Confidence 7789999999 4556688888888888877642 1257788888886543
No 385
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.34 E-value=5.1e-06 Score=67.25 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=35.6
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++|| +....+......+..++.++.. ..+..+|++|++++.
T Consensus 170 ~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~~ 216 (236)
T cd03267 170 HEPEILFLDE----------PTIGLDVVAQENIRNFLKEYNR---ERGTTVLLTSHYMKD 216 (236)
T ss_pred cCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHHHh---cCCCEEEEEecCHHH
Confidence 7789999999 5566788888888888887632 124678899998653
No 386
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.33 E-value=9.5e-06 Score=65.59 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
|+..+..++++|+||||||+++..++... +..++++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67788899999999999999999997543 455555543
No 387
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.33 E-value=3.3e-06 Score=67.63 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=34.7
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+.+++..+.. .+..+|++|++.+.
T Consensus 149 ~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~ 194 (222)
T cd03224 149 SRPKLLLLDE----------PSEGLAPKIVEEIFEAIRELRD----EGVTILLVEQNARF 194 (222)
T ss_pred cCCCEEEECC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 6788999999 4556688888888888877642 14678889988653
No 388
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.33 E-value=3.7e-06 Score=67.16 Aligned_cols=38 Identities=32% Similarity=0.523 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
|+..+..++|+|+||||||+++..+|... +..+++++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67778889999999999999999998765 456666654
No 389
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=1.5e-06 Score=70.26 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456778899999999999999999999765
No 390
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.33 E-value=1.6e-06 Score=69.88 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=26.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+.+.++..+.|.|++|+|||||++.++...
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678889999999999999999999765
No 391
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.32 E-value=1.2e-05 Score=62.54 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-----CCce--------------EEEechhhcccccchHHHHHHHHHHHHHh--CCCe
Q 026258 69 VLLYGPPGTGKTLLARAIASNI-----DANF--------------LKVVSSAIIDKYIGESARLIREMFGYARD--HQPC 127 (241)
Q Consensus 69 vll~G~~GsGKTtl~~~la~~l-----~~~~--------------~~v~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~ 127 (241)
++|.||+|+||||+++.++... |.++ ..+...+......+.....++++ ..+.. ..|.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l-~~~l~~~~~~~ 80 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKET-ANILKNATENS 80 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHH-HHHHHhCCCCe
Confidence 6899999999999999998322 2221 11222222222223344444433 22333 3789
Q ss_pred EEEEcCcccccCCCCCCCCCccHHHH-HHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 128 IIFMDEIDAIGGRRFSEGTSADREIQ-RTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 128 vl~lDe~d~l~~~~~~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
++++||...- .+.... ..+..+++.+.. ..+..+|++||..+
T Consensus 81 llllDEp~~g----------~d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 81 LVLLDELGRG----------TSTYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEEecCCCC----------CCHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 9999996433 344333 333445554432 11457888888763
No 392
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=1.7e-06 Score=68.75 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556788899999999999999999999765
No 393
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.32 E-value=1.6e-06 Score=69.07 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556788999999999999999999999765
No 394
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.32 E-value=1.6e-06 Score=69.06 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=20.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~ 88 (241)
+..++|||+||+||||+++.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 46699999999999999999973
No 395
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.32 E-value=1e-06 Score=67.10 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+..+..+.|.||+|+|||||+..+|...
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 3445667789999999999999999999755
No 396
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=1.9e-06 Score=71.35 Aligned_cols=47 Identities=34% Similarity=0.436 Sum_probs=35.7
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.+|++|| +....+......+.+++..+.. . +..+|++|++.+.
T Consensus 154 ~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~---~-g~tili~tH~~~~ 200 (274)
T PRK13647 154 AMDPDVIVLDE----------PMAYLDPRGQETLMEILDRLHN---Q-GKTVIVATHDVDL 200 (274)
T ss_pred HcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 37789999999 4556688888888888887642 1 5678899988653
No 397
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=1.5e-06 Score=72.17 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++..+
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556788899999999999999999999765
No 398
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.31 E-value=7e-06 Score=66.10 Aligned_cols=47 Identities=15% Similarity=0.365 Sum_probs=34.9
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++|| +....+......+.+++.++.. ..+..+|++|++.+.
T Consensus 148 ~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 148 TRPKLLLLDE----------PTEGIQPSIIKDIGRVIRRLRA---EGGMAILLVEQYLDF 194 (230)
T ss_pred cCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHH
Confidence 6789999999 4555678888888888877632 125678899988654
No 399
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.31 E-value=1.7e-06 Score=68.82 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=35.1
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.++++|| +....+......+.+++..+.. .+..+|++|++.+.
T Consensus 148 ~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tvi~~sH~~~~ 194 (213)
T cd03235 148 VQDPDLLLLDE----------PFAGVDPKTQEDIYELLRELRR----EGMTILVVTHDLGL 194 (213)
T ss_pred HcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHH
Confidence 37789999999 4556688888888888877642 15678999998654
No 400
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=1.4e-06 Score=70.40 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556788899999999999999999999754
No 401
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=1.4e-06 Score=71.99 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456778899999999999999999999765
No 402
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.31 E-value=5.4e-06 Score=75.85 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.+++..
T Consensus 363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4556788899999999999999999999766
No 403
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.31 E-value=1.8e-06 Score=74.05 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=35.5
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....|.+|++|| +.+..+......+..++.++.. ..+..+|++|++.+.
T Consensus 151 L~~~P~llLLDE----------P~s~LD~~~r~~l~~~L~~l~~---~~g~tii~vTHd~~e 199 (353)
T PRK10851 151 LAVEPQILLLDE----------PFGALDAQVRKELRRWLRQLHE---ELKFTSVFVTHDQEE 199 (353)
T ss_pred HhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 337789999999 4556678888888877776532 125678999988653
No 404
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.31 E-value=1.5e-05 Score=64.66 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=28.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
-|+.++..++|+|+||||||+++..++... +...+++.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 367888999999999999999998766432 44444443
No 405
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.31 E-value=5.7e-06 Score=80.75 Aligned_cols=139 Identities=22% Similarity=0.247 Sum_probs=90.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-------cccch--HHHHH-HHHHHHHHhCCCeEEEEcCcc
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-------KYIGE--SARLI-REMFGYARDHQPCIIFMDEID 135 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-------~~~~~--~~~~~-~~~f~~~~~~~~~vl~lDe~d 135 (241)
+.++++.|.||+|||+|..++|+..|-.+++++.++--. ..+++ .+-.+ ..-|-++.+. ..++++||++
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhh
Confidence 468999999999999999999999999999998764321 11111 11011 1112233333 4699999997
Q ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHhcC---------CCCCCCeEEEEEeCCC------CCCChhccCCCCcceEEEc
Q 026258 136 AIGGRRFSEGTSADREIQRTLMELLNQLDG---------FDQLGKVKMIMATNRP------DVLDPALLRPGRLDRKIEI 200 (241)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~---------~~~~~~~~vI~tt~~~------~~l~~~l~~~~r~~~~i~l 200 (241)
.. +.....-++..++-... +...++++|.++-|+. ..++..+.. || .++.+
T Consensus 1622 La-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~ 1687 (4600)
T COG5271 1622 LA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKM 1687 (4600)
T ss_pred hh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEe
Confidence 76 44455566666653321 1222355555554433 258888988 99 67889
Q ss_pred CCCCHHHHHHHHHHhHcCc
Q 026258 201 PLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 201 ~~p~~~~r~~il~~~~~~~ 219 (241)
.....+....|......+.
T Consensus 1688 d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1688 DGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred cccccchHHHHHHhhCCcc
Confidence 9999888888887666544
No 406
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=8.1e-06 Score=64.49 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
++.+.++..+.|.|++|+|||||++.++....
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 44567788999999999999999999998753
No 407
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=2e-06 Score=71.09 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=35.2
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.+|++|| +....+......+.+++..+.. . +..+|++|++.+.+
T Consensus 153 ~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~~---~-g~tii~vtH~~~~~ 199 (271)
T PRK13638 153 LQARYLLLDE----------PTAGLDPAGRTQMIAIIRRIVA---Q-GNHVIISSHDIDLI 199 (271)
T ss_pred cCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 7789999999 4556688888888888887642 1 45788889886543
No 408
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.30 E-value=9.7e-07 Score=71.53 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456788899999999999999999999764
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.30 E-value=1.6e-05 Score=63.42 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~ 88 (241)
+.++|.||+|+||||+++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 410
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.30 E-value=4.8e-06 Score=67.25 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=64.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEEechhhccc-c-------------------------
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAIIDK-Y------------------------- 106 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---------~~~~~~v~~~~~~~~-~------------------------- 106 (241)
|+..+.-+.|+|+||||||+++..++... +..+++++....... .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 57788889999999999999999998543 246666665432110 0
Q ss_pred -cchHHHHHHHHHHHHHhC-CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 107 -IGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 107 -~~~~~~~~~~~f~~~~~~-~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
..+....+..+-...... .+.+|+||-+..++....... .........+..++..+..+...-++.||++.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~ 169 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQV 169 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccE
Confidence 001112222222333445 788999999988753211111 0012222333334433322222236777777543
No 411
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.30 E-value=8.7e-07 Score=80.73 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=92.1
Q ss_pred cccchHHHHHHHHHHhhcccCC--hHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEec-hhhcccccch
Q 026258 33 AVGGLSDQIRELRESIELPLMN--PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS-SAIIDKYIGE 109 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~-~~~~~~~~~~ 109 (241)
.+.|.+.+|+.+.-.+-.-... ++.. .++---|+||.|.||+|||.|++.+++.+...++.-.. +.-.+.....
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~~~~g~---~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKNLPDGT---RIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcccCCCCc---ccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 6789999888887776443211 0000 01223579999999999999999999887554443221 1111100000
Q ss_pred HHH-HHHHH---HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc-CCCCC-------CCeEEEEE
Q 026258 110 SAR-LIREM---FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD-GFDQL-------GKVKMIMA 177 (241)
Q Consensus 110 ~~~-~~~~~---f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~-------~~~~vI~t 177 (241)
... ....+ -+...-..++|.+|||+|.+ +......+.+.++.-. ++... .++.|+++
T Consensus 364 ~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAA 432 (682)
T COG1241 364 VRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAA 432 (682)
T ss_pred EEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhh
Confidence 000 00000 01112245689999999999 5555666666665421 11111 25677888
Q ss_pred eCCCC-------------CCChhccCCCCcceEEEc-CCCCHHHHH
Q 026258 178 TNRPD-------------VLDPALLRPGRLDRKIEI-PLPNEQSRM 209 (241)
Q Consensus 178 t~~~~-------------~l~~~l~~~~r~~~~i~l-~~p~~~~r~ 209 (241)
+|... ++++.+.+ ||+..+.+ ..|+.+.-+
T Consensus 433 aNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~ 476 (682)
T COG1241 433 ANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDE 476 (682)
T ss_pred hCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchH
Confidence 88653 47788999 99886544 556654333
No 412
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.29 E-value=6.6e-06 Score=74.42 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.+++..
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4557888999999999999999999999765
No 413
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.29 E-value=3e-06 Score=68.74 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 414
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.29 E-value=5.4e-06 Score=66.61 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4456788899999999999999999999765
No 415
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.29 E-value=6.6e-06 Score=66.58 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++.-+.+.|++|.||||++|.+...+
T Consensus 44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred eeecCCCcEEEEEcCCCCcchhhHHHHhCcc
Confidence 5567888889999999999999999998766
No 416
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=4.6e-06 Score=66.13 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=47.8
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCc----ceEE
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRL----DRKI 198 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~----~~~i 198 (241)
...|.+|+-|| |..+.++...+.++..+..+. .+.+.++|+.-|..+ -+..-..|+ .-.+
T Consensus 163 ~Q~pkiILADE----------PvasLDp~~a~~Vm~~l~~in---~~~g~Tvi~nLH~vd---lA~~Y~~Riigl~~G~i 226 (258)
T COG3638 163 VQQPKIILADE----------PVASLDPESAKKVMDILKDIN---QEDGITVIVNLHQVD---LAKKYADRIIGLKAGRI 226 (258)
T ss_pred hcCCCEEecCC----------cccccChhhHHHHHHHHHHHH---HHcCCEEEEEechHH---HHHHHHhhheEecCCcE
Confidence 37788999999 555668887788877777664 334788888877643 222221132 1245
Q ss_pred EcCCCCHHHHHHHHHHhHc
Q 026258 199 EIPLPNEQSRMEILKIHAA 217 (241)
Q Consensus 199 ~l~~p~~~~r~~il~~~~~ 217 (241)
.+..|..+--.+.+.....
T Consensus 227 vfDg~~~el~~~~~~~iYg 245 (258)
T COG3638 227 VFDGPASELTDEALDEIYG 245 (258)
T ss_pred EEeCChhhhhHHHHHHHhc
Confidence 5655555455555554443
No 417
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.28 E-value=2.1e-06 Score=69.47 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=34.8
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++|| +....+......+.+++..+.. .+..+|++|++.+.
T Consensus 160 ~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~vsH~~~~ 205 (236)
T cd03219 160 TDPKLLLLDE----------PAAGLNPEETEELAELIRELRE----RGITVLLVEHDMDV 205 (236)
T ss_pred cCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHH
Confidence 6788999999 4556688888888888877642 14678899988654
No 418
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=1.8e-06 Score=71.53 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=35.5
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.+|++|| +..+.+......+.+++..+.. .+..+|++|++.+.+
T Consensus 153 ~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~l~~----~g~til~~tH~~~~~ 199 (274)
T PRK13644 153 MEPECLIFDE----------VTSMLDPDSGIAVLERIKKLHE----KGKTIVYITHNLEEL 199 (274)
T ss_pred cCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh----CCCEEEEEecCHHHH
Confidence 7789999999 4555678888888888877642 256788899887644
No 419
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.28 E-value=6.4e-06 Score=66.11 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---C------CceEEEech
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---D------ANFLKVVSS 100 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~------~~~~~v~~~ 100 (241)
|+..+.-+.|+|+||+|||+++..++... + ..+++++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 67788889999999999999999998654 2 455666654
No 420
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.28 E-value=1.9e-06 Score=73.86 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 421
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=2.4e-05 Score=63.72 Aligned_cols=116 Identities=17% Similarity=0.282 Sum_probs=63.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc------eEEEech------hh---------cccccchHHH---HHHHHH
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN------FLKVVSS------AI---------IDKYIGESAR---LIREMF 118 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------~~~v~~~------~~---------~~~~~~~~~~---~~~~~f 118 (241)
+..+..++|.||+|+||||+++.+++.+... ++.+... ++ .+........ ......
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999999877442 2221111 00 1111111111 111112
Q ss_pred HHH----HhCCCeEEEEcCcccccCCCC--------CCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 026258 119 GYA----RDHQPCIIFMDEIDAIGGRRF--------SEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (241)
Q Consensus 119 ~~~----~~~~~~vl~lDe~d~l~~~~~--------~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 178 (241)
..+ ......+|++||+.++...-. .+..+..+.....+.++++......+.+.+..+.|+
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 222 224567999999998843221 122234455555556666544433345567776554
No 422
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=2.3e-06 Score=70.65 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||+++++...
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456778889999999999999999999765
No 423
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.28 E-value=2.1e-06 Score=76.47 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=95.3
Q ss_pred cccccchHHHHHHHHHHhhccc-CChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech-hhcccc--
Q 026258 31 YSAVGGLSDQIRELRESIELPL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS-AIIDKY-- 106 (241)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~-~~~~~~-- 106 (241)
|..+.|.+.+|.-+.-.+-.=. +... ....++---|++|.|.||+|||-++++.+..+...++.-.-. .-.+..
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 3467888888888766653321 1111 122233345799999999999999999998775554432211 111000
Q ss_pred --cch-HHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh-cCCCCCC-------CeEEE
Q 026258 107 --IGE-SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL-DGFDQLG-------KVKMI 175 (241)
Q Consensus 107 --~~~-~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~~~-------~~~vI 175 (241)
.++ .....-+. +...-...+|-+|||||.+ +..-+.++.+-++.- -++.+.+ +..+|
T Consensus 422 VvkD~esgdf~iEA-GALmLADnGICCIDEFDKM-----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 422 VVKDEESGDFTIEA-GALMLADNGICCIDEFDKM-----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EEecCCCCceeeec-CcEEEccCceEEechhccc-----------ChHhHHHHHHHHHhheehheecceEEeecchhhhh
Confidence 000 00000000 1112244579999999999 443444454444431 1111111 45567
Q ss_pred EEeCCCC-------------CCChhccCCCCcceE-EEcCCCCHHHHHHHHHHhH
Q 026258 176 MATNRPD-------------VLDPALLRPGRLDRK-IEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 176 ~tt~~~~-------------~l~~~l~~~~r~~~~-i~l~~p~~~~r~~il~~~~ 216 (241)
+++|+.. .+++++.+ ||+.. |-++-|++..-..|-+..+
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHH
Confidence 7777542 47788989 99885 4568888877666665544
No 424
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.28 E-value=3.5e-06 Score=69.29 Aligned_cols=51 Identities=22% Similarity=0.396 Sum_probs=38.6
Q ss_pred HHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 119 ~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+.+..+.|.||+.||.- +..+++....+.+++..++. .-+..+++.|+..+
T Consensus 153 ARALa~~P~iLL~DEaT----------SALDP~TT~sIL~LL~~In~---~lglTIvlITHEm~ 203 (339)
T COG1135 153 ARALANNPKILLCDEAT----------SALDPETTQSILELLKDINR---ELGLTIVLITHEME 203 (339)
T ss_pred HHHHhcCCCEEEecCcc----------ccCChHHHHHHHHHHHHHHH---HcCCEEEEEechHH
Confidence 34455889999999964 44588888888888887742 34788999998754
No 425
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.28 E-value=2.2e-06 Score=68.96 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4556788899999999999999999999765
No 426
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.27 E-value=5.5e-06 Score=71.20 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=26.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+..+..+.|.||+|||||||++.++...
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456677889999999999999999999754
No 427
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.27 E-value=3.6e-06 Score=67.31 Aligned_cols=46 Identities=33% Similarity=0.480 Sum_probs=34.9
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
....|.++++|| +....+......+.+++..+.. +..+|++|++.+
T Consensus 155 l~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~~sH~~~ 200 (220)
T cd03245 155 LLNDPPILLLDE----------PTSAMDMNSEERLKERLRQLLG-----DKTLIIITHRPS 200 (220)
T ss_pred HhcCCCEEEEeC----------ccccCCHHHHHHHHHHHHHhcC-----CCEEEEEeCCHH
Confidence 347789999999 4556688888888888887642 257888888865
No 428
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.27 E-value=4.9e-05 Score=65.57 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHH--HHHHHHhCCceEEEechhhcccc----------
Q 026258 39 DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA--RAIASNIDANFLKVVSSAIIDKY---------- 106 (241)
Q Consensus 39 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~--~~la~~l~~~~~~v~~~~~~~~~---------- 106 (241)
+..++|+.++.. .+...+++.||.||||+.|+ +++.. ...++.++|..+....
T Consensus 3 e~~~~L~~wL~e-------------~~~TFIvV~GPrGSGK~elV~d~~L~~--r~~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 3 EAIEQLKSWLNE-------------NPNTFIVVQGPRGSGKRELVMDHVLKD--RKNVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred hHHHHHHHHHhc-------------CCCeEEEEECCCCCCccHHHHHHHHhC--CCCEEEEEChHhhhccChHHHHHHHH
Confidence 456777777753 44567999999999999999 44443 3447888887665411
Q ss_pred ---------------------------------cchHHHHHHHHHHHHHh--------------------------CC--
Q 026258 107 ---------------------------------IGESARLIREMFGYARD--------------------------HQ-- 125 (241)
Q Consensus 107 ---------------------------------~~~~~~~~~~~f~~~~~--------------------------~~-- 125 (241)
-...+..+++++..+.. .+
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 01123334444433210 11
Q ss_pred -CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCChhccCCCCcceEEEcC
Q 026258 126 -PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD---VLDPALLRPGRLDRKIEIP 201 (241)
Q Consensus 126 -~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~---~l~~~l~~~~r~~~~i~l~ 201 (241)
.-||+||.+..-.. .+......+.++...+-. ++---||+.|++.. .+..++-+ +.-..|.+.
T Consensus 148 ~~PVVVIdnF~~k~~--------~~~~iy~~laeWAa~Lv~---~nIAHVIFlT~dv~~~k~LskaLPn--~vf~tI~L~ 214 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAE--------ENDFIYDKLAEWAASLVQ---NNIAHVIFLTDDVSYSKPLSKALPN--RVFKTISLS 214 (431)
T ss_pred cCCEEEEcchhccCc--------ccchHHHHHHHHHHHHHh---cCccEEEEECCCCchhhhHHHhCCC--CceeEEeec
Confidence 23999999855411 133344444444443321 12234677776553 45556644 655789999
Q ss_pred CCCHHHHHHHHHHhHcCc
Q 026258 202 LPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 202 ~p~~~~r~~il~~~~~~~ 219 (241)
..+.+.-+.++..++...
T Consensus 215 Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 215 DASPESAKQYVLSQLDED 232 (431)
T ss_pred CCCHHHHHHHHHHHhccc
Confidence 999888888888877653
No 429
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.27 E-value=2e-05 Score=66.09 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=71.3
Q ss_pred ccccccchHHHHHHHHHHhhcccCCh---H----HHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce-EEEechh
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNP---E----LFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF-LKVVSSA 101 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~---~----~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~-~~v~~~~ 101 (241)
+|..=.-+..+...|.+........+ . +|.+ .-.+++++.+||+-|+|||.|...+.+.+...- ..+....
T Consensus 23 ~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r-~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~ 101 (367)
T COG1485 23 TFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGR-DHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHR 101 (367)
T ss_pred CCCCChHHHHHHHHHHHHHHHhhccccccccccccccc-CCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHH
Confidence 34332345555555555554222111 1 2222 123568999999999999999999998774432 2222122
Q ss_pred hcccc-------cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 102 IIDKY-------IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 102 ~~~~~-------~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
+.... .|.. .-+..+-. .......||++||++.- +..-...+.++++.+-. .+|.+
T Consensus 102 FM~~vH~~l~~l~g~~-dpl~~iA~-~~~~~~~vLCfDEF~Vt-----------DI~DAMiL~rL~~~Lf~----~GV~l 164 (367)
T COG1485 102 FMARVHQRLHTLQGQT-DPLPPIAD-ELAAETRVLCFDEFEVT-----------DIADAMILGRLLEALFA----RGVVL 164 (367)
T ss_pred HHHHHHHHHHHHcCCC-CccHHHHH-HHHhcCCEEEeeeeeec-----------ChHHHHHHHHHHHHHHH----CCcEE
Confidence 21100 0000 00001111 11123459999998654 44444555666666543 28899
Q ss_pred EEEeCCC
Q 026258 175 IMATNRP 181 (241)
Q Consensus 175 I~tt~~~ 181 (241)
|+|+|.+
T Consensus 165 vaTSN~~ 171 (367)
T COG1485 165 VATSNTA 171 (367)
T ss_pred EEeCCCC
Confidence 9999864
No 430
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=98.27 E-value=1.5e-06 Score=68.14 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=56.7
Q ss_pred eEEEEcCCCChHHHHHHHH-HHHh---CCceEEEechhhcccccch-HHHH----------------HHHHHHHHHhCCC
Q 026258 68 GVLLYGPPGTGKTLLARAI-ASNI---DANFLKVVSSAIIDKYIGE-SARL----------------IREMFGYARDHQP 126 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~l-a~~l---~~~~~~v~~~~~~~~~~~~-~~~~----------------~~~~f~~~~~~~~ 126 (241)
-.+++|.||+|||+.+-.. .... +..++. +..++.-..... .... .............
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKG 80 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCC
Confidence 3689999999999976554 3322 555554 544222111000 0000 0011111111256
Q ss_pred eEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcC
Q 026258 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIP 201 (241)
Q Consensus 127 ~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~ 201 (241)
++|+|||++.++..+.... ......+ ..+.. .+..+.-+|++|+++..++..++. ++...+.+.
T Consensus 81 ~liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~ 144 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCR 144 (193)
T ss_dssp -EEEETTGGGTSB---T-T--------HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEE
T ss_pred cEEEEECChhhcCCCcccc----ccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEE
Confidence 8999999999986653211 1112222 34433 333478999999999999998887 665555443
No 431
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.27 E-value=7.2e-06 Score=70.09 Aligned_cols=71 Identities=18% Similarity=0.400 Sum_probs=45.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----ceEEEech-hhc--------cc-ccchHHHHHHHHHHHHHhCCCeEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA----NFLKVVSS-AII--------DK-YIGESARLIREMFGYARDHQPCII 129 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~----~~~~v~~~-~~~--------~~-~~~~~~~~~~~~f~~~~~~~~~vl 129 (241)
.+...++|.||+||||||+++++++.+.. .++.+.-+ ++. .+ ..+.....+...+..+....|++|
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i 199 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVI 199 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEE
Confidence 34567999999999999999999987742 23333211 110 00 011111234555666778899999
Q ss_pred EEcCc
Q 026258 130 FMDEI 134 (241)
Q Consensus 130 ~lDe~ 134 (241)
++||+
T Consensus 200 ~vgEi 204 (343)
T TIGR01420 200 LIGEM 204 (343)
T ss_pred EEeCC
Confidence 99998
No 432
>PRK08118 topology modulation protein; Reviewed
Probab=98.26 E-value=3e-06 Score=64.93 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=30.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
.++|+|+|||||||+++.+++.++.+++.++.-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~ 36 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF 36 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 5899999999999999999999999988888543
No 433
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.26 E-value=1.4e-05 Score=62.87 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=32.6
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++||. ....+......+..++..+.. +..+|++|++.+.
T Consensus 134 ~~~~illlDEP----------~~~LD~~~~~~l~~~l~~~~~-----~~tiIiitH~~~~ 178 (197)
T cd03278 134 RPSPFCVLDEV----------DAALDDANVERFARLLKEFSK-----ETQFIVITHRKGT 178 (197)
T ss_pred CCCCEEEEeCC----------cccCCHHHHHHHHHHHHHhcc-----CCEEEEEECCHHH
Confidence 34589999995 444577778888888877642 3568888998653
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.26 E-value=1.7e-05 Score=62.79 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~ 88 (241)
..+..++|.||+|+||||+++.++.
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999973
No 435
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=2.1e-06 Score=71.24 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556788899999999999999999999765
No 436
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=2.2e-06 Score=69.45 Aligned_cols=31 Identities=42% Similarity=0.517 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 437
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.26 E-value=6.9e-05 Score=63.43 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=51.3
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCCh------------h-
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD---VLDP------------A- 187 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~---~l~~------------~- 187 (241)
..+-|++|||+|++ .+.....+.+.+..+- ..+++.+|++.+... .+.. .
T Consensus 171 ~~~iViiIDdLDR~-----------~~~~i~~~l~~ik~~~---~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRC-----------SPEEIVELLEAIKLLL---DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcC-----------CcHHHHHHHHHHHHhc---CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 34669999999999 4444444444454443 336888888875321 1111 1
Q ss_pred ccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc
Q 026258 188 LLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 188 l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~ 219 (241)
+.. .|+..+.+|.|+..+...++...+...
T Consensus 237 LeK--iiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 237 LEK--IIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred HHh--hcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 222 566688999999999888888775443
No 438
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=7.8e-06 Score=66.01 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=35.6
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
....|.++++|| +....+......+.+++..+.. +..+|++|++.+.+
T Consensus 153 l~~~p~lllLDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~ 200 (234)
T cd03251 153 LLKDPPILILDE----------ATSALDTESERLVQAALERLMK-----NRTTFVIAHRLSTI 200 (234)
T ss_pred HhcCCCEEEEeC----------ccccCCHHHHHHHHHHHHHhcC-----CCEEEEEecCHHHH
Confidence 347789999999 4555678888888888876632 45788888887654
No 439
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.25 E-value=1.3e-06 Score=77.91 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=46.9
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC-CceEEE
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-ANFLKV 97 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~-~~~~~v 97 (241)
-|+++.|++++++++.+++.... ..++ .+...++|.||||+|||+|++++++.+. .+++.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa------~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAA------QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHH------HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 57889999999999999984321 1222 3456799999999999999999998873 345444
No 440
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.25 E-value=4.8e-06 Score=65.47 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=24.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
.+..++.|++|||||++++.+...+ +..++.+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 4568889999999999999987666 444444443
No 441
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.25 E-value=6e-06 Score=66.84 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
+....|.++++|| +....+......+.+++..+.. +..+|++|++++.+
T Consensus 152 al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~-----~~tiii~sH~~~~~ 200 (237)
T cd03252 152 ALIHNPRILIFDE----------ATSALDYESEHAIMRNMHDICA-----GRTVIIIAHRLSTV 200 (237)
T ss_pred HHhhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHhcC-----CCEEEEEeCCHHHH
Confidence 3347789999999 4555688888888888877631 46788999987654
No 442
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=2.5e-06 Score=74.18 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.++...
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4456778889999999999999999999765
No 443
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.25 E-value=2.3e-06 Score=70.20 Aligned_cols=31 Identities=32% Similarity=0.681 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 444
>PRK05973 replicative DNA helicase; Provisional
Probab=98.25 E-value=2.4e-05 Score=63.08 Aligned_cols=37 Identities=35% Similarity=0.400 Sum_probs=29.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
|+.++..++|.|+||+|||+++..++... |.+++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 67788889999999999999999887654 55555544
No 445
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.25 E-value=7.5e-06 Score=75.02 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|||||||++.+++..
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567888999999999999999999999765
No 446
>PRK04296 thymidine kinase; Provisional
Probab=98.25 E-value=2.4e-05 Score=61.21 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEE
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI---DANFLKV 97 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v 97 (241)
.-.+++||+|+||||++..++..+ +..++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 458899999999999998888766 4444444
No 447
>PRK10536 hypothetical protein; Provisional
Probab=98.24 E-value=1.9e-05 Score=64.07 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=34.9
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+..+.+.+.....+..++. ....+++.||+|||||+|+.+++..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---------------~~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---------------SKQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 444556677777777766663 1348999999999999999999874
No 448
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.24 E-value=9.3e-07 Score=67.71 Aligned_cols=23 Identities=35% Similarity=0.801 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 026258 68 GVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l 90 (241)
+++|.|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 449
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.24 E-value=1.1e-05 Score=64.79 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4556788899999999999999999999754
No 450
>PRK09354 recA recombinase A; Provisional
Probab=98.24 E-value=1e-05 Score=68.67 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=51.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccc----------------ccchHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~f~~~~ 122 (241)
|+..+..+.|+||+|||||+|+..++... +..+++++....... .+...+..+..+-..+.
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56778889999999999999999887544 566666665432211 11122233333333344
Q ss_pred hCCCeEEEEcCcccccC
Q 026258 123 DHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~ 139 (241)
...+++++||-+..+..
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56788999999998874
No 451
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.24 E-value=4.9e-06 Score=67.56 Aligned_cols=31 Identities=35% Similarity=0.613 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4456778899999999999999999999654
No 452
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.24 E-value=1e-05 Score=63.95 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 4456788899999999999999999999765
No 453
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.24 E-value=3e-05 Score=67.57 Aligned_cols=119 Identities=16% Similarity=0.246 Sum_probs=72.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTS 147 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~ 147 (241)
.++|.||.+|||||+++.+.+.+....+.++..+.......- ......+......+...++|||++.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 899999999999999999988875556666655554332211 11122232333335579999999887
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC----CCChhccCCCCcceEEEcCCCCHHHHHH
Q 026258 148 ADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD----VLDPALLRPGRLDRKIEIPLPNEQSRME 210 (241)
Q Consensus 148 ~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~----~l~~~l~~~~r~~~~i~l~~p~~~~r~~ 210 (241)
+.-...+..+.+.. ...+++++++.. ...+.+.. |. ..+.+.+.+..+...
T Consensus 107 --~~W~~~lk~l~d~~-------~~~v~itgsss~ll~~~~~~~L~G--R~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRG-------NLDVLITGSSSSLLSKEISESLAG--RG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHccc-------cceEEEECCchhhhccchhhhcCC--Cc-eeEEECCCCHHHHHh
Confidence 22344555555422 113444444332 33444444 74 678888888888754
No 454
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.24 E-value=3.2e-06 Score=69.79 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778899999999999999999999765
No 455
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=4.1e-06 Score=68.58 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=35.5
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.+|++|| +....+......+.+++..+.. ..+..+|++|++.+.+
T Consensus 170 ~~p~llllDE----------Pt~~LD~~~~~~l~~~L~~~~~---~~~~tii~~sH~~~~~ 217 (255)
T PRK11300 170 TQPEILMLDE----------PAAGLNPKETKELDELIAELRN---EHNVTVLLIEHDMKLV 217 (255)
T ss_pred cCCCEEEEcC----------CccCCCHHHHHHHHHHHHHHHh---hcCCEEEEEeCCHHHH
Confidence 7789999999 4556688888888888876632 1156899999986543
No 456
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=3.8e-06 Score=68.83 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=35.2
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.++++|| +..+.+......+..++..+.. .+..+|++|++.+.+
T Consensus 155 ~~p~llllDE----------P~~~LD~~~~~~l~~~l~~l~~----~~~tiii~tH~~~~~ 201 (255)
T PRK11231 155 QDTPVVLLDE----------PTTYLDINHQVELMRLMRELNT----QGKTVVTVLHDLNQA 201 (255)
T ss_pred cCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEECCHHHH
Confidence 7789999999 4556688888888888876632 146789999886643
No 457
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=2.8e-06 Score=70.59 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.++++|| +....+......+..++..+.. ..+..+|++|++.+.+
T Consensus 161 ~~p~llllDE----------Pt~gLD~~~~~~l~~~l~~l~~---~~g~tillvtH~~~~~ 208 (280)
T PRK13633 161 MRPECIIFDE----------PTAMLDPSGRREVVNTIKELNK---KYGITIILITHYMEEA 208 (280)
T ss_pred cCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecChHHH
Confidence 7789999999 4556688888888888877632 1256788889887654
No 458
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=6.1e-06 Score=66.82 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||+++++...
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4456788899999999999999999998654
No 459
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=3e-05 Score=66.51 Aligned_cols=116 Identities=16% Similarity=0.280 Sum_probs=63.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-----ceEEEechhh----------------cccccchHHHHHH---HHH
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDA-----NFLKVVSSAI----------------IDKYIGESARLIR---EMF 118 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~-----~~~~v~~~~~----------------~~~~~~~~~~~~~---~~f 118 (241)
+..+.-.+|.||+|+|||||++.+++.... .++.+...+. .+..........+ .+.
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 455677999999999999999999987732 2111111111 1111111111111 222
Q ss_pred HHHH----hCCCeEEEEcCcccccCCC--------CCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 026258 119 GYAR----DHQPCIIFMDEIDAIGGRR--------FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (241)
Q Consensus 119 ~~~~----~~~~~vl~lDe~d~l~~~~--------~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 178 (241)
..+. .....+|++||++++...- .....+.++........++.........+.+.+|+|+
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2222 2346799999999985321 1122344555555566666654443345677777774
No 460
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=98.23 E-value=1.9e-06 Score=71.24 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=60.7
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---ceEEEec-h
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVS-S 100 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~---~~~~v~~-~ 100 (241)
.....+++++.-.....+.+.+++... +....+++|.|++||||||++++++..+.. .++.+.- .
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred ccccccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 345568888876666666666666432 234678999999999999999999988833 3333331 1
Q ss_pred hhcc------ccc-chHHHHHHHHHHHHHhCCCeEEEEcCccc
Q 026258 101 AIID------KYI-GESARLIREMFGYARDHQPCIIFMDEIDA 136 (241)
Q Consensus 101 ~~~~------~~~-~~~~~~~~~~f~~~~~~~~~vl~lDe~d~ 136 (241)
++.- ... ......+...+..+.+..|+++++.|+-.
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1100 000 01223344666677888999999999843
No 461
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=7.2e-06 Score=66.28 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||+++++...
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4456778899999999999999999999765
No 462
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=2.6e-06 Score=70.16 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||+++++...
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4556788899999999999999999999654
No 463
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.1e-05 Score=67.13 Aligned_cols=114 Identities=15% Similarity=0.322 Sum_probs=74.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh--CCceEEEechhhcccc--------------cchHHHHHHHHHHHHHhCC
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAIIDKY--------------IGESARLIREMFGYARDHQ 125 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l--~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~f~~~~~~~ 125 (241)
|+.++.-+||-|.||.|||||+..++..+ ...++++...+-..+. .--.+..+..+...+...+
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 56788889999999999999999888777 2367787754433221 1113445667777788899
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
|++++||-++.+....-+...++-.+.......++...+. .++.+++..|
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~----~~i~~fiVGH 218 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKT----KNIAIFIVGH 218 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHH----cCCeEEEEEE
Confidence 9999999999997655443334444444444445443322 2445555443
No 464
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.23 E-value=2.1e-05 Score=64.61 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
|+.++..++|+|+||||||+++..++... +..++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56778889999999999999999886543 44555444
No 465
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=9e-06 Score=66.05 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456788889999999999999999999765
No 466
>PRK07261 topology modulation protein; Provisional
Probab=98.22 E-value=3.9e-06 Score=64.53 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
.++|+|+|||||||+++.++..++.+++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999998888776443
No 467
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=98.22 E-value=2.3e-05 Score=69.86 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=59.4
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---ceEEEec----
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA---NFLKVVS---- 99 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~---~~~~v~~---- 99 (241)
...+++++.-.++..+.+...+. .+...+++.||+||||||++.++...+.. .++.+.-
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45577887666777777777664 23345899999999999999988877742 3444321
Q ss_pred --hhhcc-cccchHHHHHHHHHHHHHhCCCeEEEEcCc
Q 026258 100 --SAIID-KYIGESARLIREMFGYARDHQPCIIFMDEI 134 (241)
Q Consensus 100 --~~~~~-~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~ 134 (241)
..... ................+.+..|++|++.|+
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEi 320 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCC
Confidence 11100 001111123345556677789999999998
No 468
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.22 E-value=5.5e-06 Score=66.50 Aligned_cols=47 Identities=28% Similarity=0.412 Sum_probs=35.0
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
...|.++++|| +....+......+.+++..+.. .+..+|++|++.+.
T Consensus 129 ~~~p~llilDE----------P~~~LD~~~~~~l~~~l~~~~~----~~~tvii~sH~~~~ 175 (223)
T TIGR03771 129 ATRPSVLLLDE----------PFTGLDMPTQELLTELFIELAG----AGTAILMTTHDLAQ 175 (223)
T ss_pred hcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHH
Confidence 37789999999 4555678888888888877642 15678899988653
No 469
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=3.1e-06 Score=70.13 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=34.9
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++||. ....+......+..++..+.. . +..+|++|++.+.
T Consensus 154 ~~p~llllDEP----------t~gLD~~~~~~l~~~l~~l~~---~-~~til~vtH~~~~ 199 (275)
T PRK13639 154 MKPEIIVLDEP----------TSGLDPMGASQIMKLLYDLNK---E-GITIIISTHDVDL 199 (275)
T ss_pred cCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHH
Confidence 77899999994 555688888888888887642 1 5678889988654
No 470
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.22 E-value=1.4e-05 Score=68.98 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=55.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~ 142 (241)
..+.|+++.||+|||||+++.+++... -..-..+....+.. .... ..++ .-...++|+|||+..+--
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~----~L~~---~~lg--~v~~~DlLI~DEvgylp~--- 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFY----NIST---RQIG--LVGRWDVVAFDEVATLKF--- 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHH----HHHH---HHHh--hhccCCEEEEEcCCCCcC---
Confidence 557899999999999999999988651 00001222222221 1111 1122 124468999999988621
Q ss_pred CCCCCccHHHHHHHHHHHHHhcC----CCCCCCeEEEEEeCCCC
Q 026258 143 SEGTSADREIQRTLMELLNQLDG----FDQLGKVKMIMATNRPD 182 (241)
Q Consensus 143 ~~~~~~~~~~~~~l~~ll~~~~~----~~~~~~~~vI~tt~~~~ 182 (241)
....+....|...++.-.- ........+|+..|-..
T Consensus 275 ----~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 275 ----AKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred ----CchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1234455566655543210 01112455666666543
No 471
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.21 E-value=1.2e-05 Score=57.90 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=41.6
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.|.|+.-+.+.+.+++..++.++ .-.++--+.|+|++|||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47899999999999888765442 12444557799999999999999999986
No 472
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.5e-05 Score=64.72 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 473
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=3.2e-06 Score=71.73 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|||||||+++++..+
T Consensus 35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 35 SFTLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4556788899999999999999999999765
No 474
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00012 Score=58.80 Aligned_cols=144 Identities=20% Similarity=0.334 Sum_probs=82.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---eEEEechhhccc-----ccc------------hHHHHHHHHHHHHHh-CC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDAN---FLKVVSSAIIDK-----YIG------------ESARLIREMFGYARD-HQ 125 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~---~~~v~~~~~~~~-----~~~------------~~~~~~~~~f~~~~~-~~ 125 (241)
.-+.++|+-|||||.++|++...++.. .+.++...+... ... ..+..-+.+....+. ..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 368899999999999999777666322 223332221110 000 111222223333333 45
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCC------CCcceEEE
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRP------GRLDRKIE 199 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~------~r~~~~i~ 199 (241)
|.++++||++.+ .......+..+.+..... .+...++...... +.+.++.+ -|+...+.
T Consensus 132 ~v~l~vdEah~L-----------~~~~le~Lrll~nl~~~~--~~~l~ivL~Gqp~--L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 132 PVVLMVDEAHDL-----------NDSALEALRLLTNLEEDS--SKLLSIVLIGQPK--LRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred CeEEeehhHhhh-----------ChhHHHHHHHHHhhcccc--cCceeeeecCCcc--cchhhchHHHHhhhheEEEEEe
Confidence 689999999998 333444444444432221 2245566665532 33322211 17766789
Q ss_pred cCCCCHHHHHHHHHHhHcCccCCCCC
Q 026258 200 IPLPNEQSRMEILKIHAAGIAKHGEI 225 (241)
Q Consensus 200 l~~p~~~~r~~il~~~~~~~~~~~~~ 225 (241)
+++.+.++-...++.+++.......+
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l 222 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPL 222 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCccc
Confidence 99999999999999998887655443
No 475
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.21 E-value=1.7e-05 Score=62.81 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||+++++...
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4456788899999999999999999999754
No 476
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=4.4e-06 Score=67.44 Aligned_cols=31 Identities=42% Similarity=0.480 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456788899999999999999999999776
No 477
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.20 E-value=1.4e-05 Score=69.80 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=26.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+-|.||+|||||||+|.+....
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHccc
Confidence 4446778889999999999999999998544
No 478
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=1.7e-05 Score=63.82 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||+++++...
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4456778889999999999999999999765
No 479
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=4.4e-06 Score=67.86 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 480
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.20 E-value=1.7e-05 Score=63.52 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4556788899999999999999999999764
No 481
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.20 E-value=4.4e-06 Score=68.48 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4456788899999999999999999999755
No 482
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=1.3e-05 Score=66.75 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||+++++..+
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 4456778899999999999999999999876
No 483
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=3.9e-06 Score=68.07 Aligned_cols=31 Identities=35% Similarity=0.614 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.++...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4456788899999999999999999999765
No 484
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=2.1e-05 Score=63.87 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=27.0
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456788899999999999999999999765
No 485
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.19 E-value=2.2e-05 Score=63.99 Aligned_cols=31 Identities=39% Similarity=0.568 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456778889999999999999999999765
No 486
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.19 E-value=9.4e-06 Score=76.02 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.4
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|||||||++.+++..
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556788999999999999999999999765
No 487
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.19 E-value=1.1e-05 Score=74.03 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=27.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|||||||++.+++..
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5567888999999999999999999999766
No 488
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.19 E-value=5.2e-06 Score=68.70 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=34.8
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.++++|| +....+......+.+++..+.. .+..+|++|++.+.
T Consensus 159 ~~p~llllDE----------Pt~~LD~~~~~~l~~~L~~~~~----~g~tviivsH~~~~ 204 (272)
T PRK15056 159 QQGQVILLDE----------PFTGVDVKTEARIISLLRELRD----EGKTMLVSTHNLGS 204 (272)
T ss_pred cCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 6789999999 4555688888888888877642 14678889988654
No 489
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.19 E-value=2.9e-05 Score=62.21 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~ 88 (241)
+..+..++|.||+|+||||+++.++.
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999987
No 490
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.19 E-value=7.6e-06 Score=72.64 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+-|.|++||||||+++.++...
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5567788899999999999999999999766
No 491
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.19 E-value=8.7e-06 Score=65.42 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
++.+.++..+.|.||+|+|||||++.++....
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 44567888999999999999999999997654
No 492
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.18 E-value=5.1e-06 Score=73.98 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||+++++...
T Consensus 44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4456778889999999999999999999876
No 493
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.18 E-value=3.9e-06 Score=69.21 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=27.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4556788899999999999999999999765
No 494
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.18 E-value=1.9e-05 Score=60.10 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++..+|.||+|+|||+++++++-.+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999986433
No 495
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=5e-06 Score=67.27 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|+|||||++.++...
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~ 49 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFI 49 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4456778899999999999999999998754
No 496
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=4.7e-06 Score=69.48 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+..++..+.. ..+..+|++|++.+.
T Consensus 161 ~~P~llllDE----------Pt~gLD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~~ 207 (287)
T PRK13637 161 MEPKILILDE----------PTAGLDPKGRDEILNKIKELHK---EYNMTIILVSHSMED 207 (287)
T ss_pred cCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 7788999999 5566688888888888887642 125678999988643
No 497
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.18 E-value=2.4e-05 Score=64.17 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=35.5
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
..|.++++|| +..+.+......+.+++.++.. .+..+|++|++++.+
T Consensus 169 ~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~l~~----~g~tiiivsH~~~~~ 215 (257)
T PRK10619 169 MEPEVLLFDE----------PTSALDPELVGEVLRIMQQLAE----EGKTMVVVTHEMGFA 215 (257)
T ss_pred cCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHH
Confidence 6788999999 4555688888888888877642 157788999986543
No 498
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.18 E-value=2e-05 Score=63.99 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=35.1
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+.+++..+.. +..+|++|++.+.
T Consensus 160 ~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~~~-----~~tii~~sH~~~~ 204 (242)
T TIGR03411 160 QDPKLLLLDE----------PVAGMTDEETEKTAELLKSLAG-----KHSVVVVEHDMEF 204 (242)
T ss_pred cCCCEEEecC----------CccCCCHHHHHHHHHHHHHHhc-----CCEEEEEECCHHH
Confidence 7789999999 4556688888888888887642 3578999988654
No 499
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.17 E-value=1.2e-05 Score=74.93 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.|++|||||||++.+++..
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4557888999999999999999999999765
No 500
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.17 E-value=4.7e-06 Score=75.08 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+....|.+|++|| +....+......+..++..+... +..+|++||+.+.
T Consensus 154 aL~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~~~----g~tiiivtHd~~~ 202 (510)
T PRK15439 154 GLMRDSRILILDE----------PTASLTPAETERLFSRIRELLAQ----GVGIVFISHKLPE 202 (510)
T ss_pred HHHcCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHHC----CCEEEEEeCCHHH
Confidence 3347899999999 55666888888888888776421 4678999998654
Done!