Query 026258
Match_columns 241
No_of_seqs 145 out of 2054
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:19:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.9E-46 1.3E-50 317.6 25.6 237 2-238 118-354 (405)
2 4b4t_H 26S protease regulatory 100.0 1E-44 3.5E-49 312.4 24.3 237 2-238 179-415 (467)
3 4b4t_L 26S protease subunit RP 100.0 1.2E-44 4.1E-49 312.8 23.4 237 2-238 151-387 (437)
4 4b4t_I 26S protease regulatory 100.0 1.3E-44 4.5E-49 309.0 22.9 237 2-238 152-388 (437)
5 4b4t_M 26S protease regulatory 100.0 1.2E-44 4.3E-49 312.4 20.4 237 2-238 151-387 (434)
6 4b4t_K 26S protease regulatory 100.0 2.7E-43 9.4E-48 303.9 22.7 237 2-238 142-379 (428)
7 3cf2_A TER ATPase, transitiona 100.0 1.3E-37 4.5E-42 285.7 12.1 233 5-238 451-683 (806)
8 3cf2_A TER ATPase, transitiona 100.0 5.3E-36 1.8E-40 275.1 19.1 212 24-238 196-407 (806)
9 3h4m_A Proteasome-activating n 100.0 2E-32 6.8E-37 226.3 23.4 215 24-238 9-223 (285)
10 3cf0_A Transitional endoplasmi 100.0 3.7E-33 1.3E-37 232.7 16.8 211 24-237 7-220 (301)
11 2ce7_A Cell division protein F 100.0 3E-31 1E-35 232.2 23.0 217 21-238 4-221 (476)
12 1lv7_A FTSH; alpha/beta domain 100.0 2.8E-31 9.7E-36 216.4 20.1 214 22-236 2-215 (257)
13 3eie_A Vacuolar protein sortin 100.0 2E-31 7E-36 224.2 18.1 212 20-236 6-218 (322)
14 2x8a_A Nuclear valosin-contain 100.0 5.2E-31 1.8E-35 216.7 19.4 207 25-234 3-212 (274)
15 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.7E-31 2.3E-35 220.9 18.8 208 24-237 4-214 (322)
16 3hu3_A Transitional endoplasmi 100.0 4.6E-30 1.6E-34 226.2 22.4 208 27-237 199-406 (489)
17 2qp9_X Vacuolar protein sortin 100.0 1.2E-30 4.3E-35 222.1 17.0 219 14-237 33-252 (355)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.1E-29 3.8E-34 207.1 18.2 209 27-236 1-212 (262)
19 1ixz_A ATP-dependent metallopr 100.0 2.8E-28 9.5E-33 198.3 23.0 214 24-238 8-221 (254)
20 2dhr_A FTSH; AAA+ protein, hex 100.0 3.7E-29 1.3E-33 220.2 18.5 211 27-238 26-236 (499)
21 2zan_A Vacuolar protein sortin 100.0 1.6E-29 5.5E-34 221.1 14.6 215 17-237 119-336 (444)
22 3vfd_A Spastin; ATPase, microt 100.0 2.3E-28 8E-33 210.6 21.0 216 14-235 97-312 (389)
23 3b9p_A CG5977-PA, isoform A; A 100.0 4.2E-28 1.4E-32 201.5 20.9 209 22-235 11-219 (297)
24 1iy2_A ATP-dependent metallopr 100.0 4.7E-27 1.6E-31 193.6 23.9 213 25-238 33-245 (278)
25 3d8b_A Fidgetin-like protein 1 100.0 8.1E-28 2.8E-32 204.9 19.3 195 21-221 73-269 (357)
26 2r62_A Cell division protease 99.9 7.4E-30 2.5E-34 209.1 0.3 212 23-235 2-215 (268)
27 1ypw_A Transitional endoplasmi 99.9 4.6E-30 1.6E-34 238.6 -1.5 214 24-237 469-682 (806)
28 1ypw_A Transitional endoplasmi 99.9 2.2E-26 7.4E-31 214.0 18.1 209 25-236 197-405 (806)
29 3t15_A Ribulose bisphosphate c 99.9 9.3E-25 3.2E-29 181.2 16.4 171 62-238 32-216 (293)
30 3syl_A Protein CBBX; photosynt 99.9 2.2E-21 7.4E-26 161.7 15.1 189 33-236 32-235 (309)
31 3pfi_A Holliday junction ATP-d 99.9 7.8E-21 2.7E-25 160.4 18.0 186 19-235 16-214 (338)
32 2c9o_A RUVB-like 1; hexameric 99.8 5.9E-22 2E-26 173.8 5.7 178 26-212 31-235 (456)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 1.8E-19 6E-24 151.0 20.4 182 24-237 4-200 (324)
34 3u61_B DNA polymerase accessor 99.8 3E-20 1E-24 155.9 14.9 182 21-240 15-208 (324)
35 2chg_A Replication factor C sm 99.8 5.1E-19 1.7E-23 139.6 18.1 180 22-237 7-193 (226)
36 3uk6_A RUVB-like 2; hexameric 99.8 4.9E-19 1.7E-23 150.9 17.5 183 26-238 38-292 (368)
37 1jbk_A CLPB protein; beta barr 99.8 8.2E-20 2.8E-24 140.9 11.3 160 27-212 17-194 (195)
38 3pvs_A Replication-associated 99.8 2.6E-19 8.9E-24 156.2 15.6 180 22-238 16-205 (447)
39 1sxj_A Activator 1 95 kDa subu 99.8 8.3E-20 2.8E-24 162.5 10.2 205 11-238 18-242 (516)
40 1sxj_E Activator 1 40 kDa subu 99.8 9.9E-19 3.4E-23 148.2 15.8 179 21-237 3-226 (354)
41 1ofh_A ATP-dependent HSL prote 99.8 1E-18 3.5E-23 145.3 14.5 204 33-238 16-248 (310)
42 2v1u_A Cell division control p 99.8 1.4E-18 4.8E-23 148.4 15.7 188 30-237 17-235 (387)
43 1l8q_A Chromosomal replication 99.8 1.4E-18 4.8E-23 145.8 15.2 182 26-237 5-198 (324)
44 2chq_A Replication factor C sm 99.8 6.4E-19 2.2E-23 147.0 12.5 183 20-238 5-194 (319)
45 1iqp_A RFCS; clamp loader, ext 99.8 3.8E-18 1.3E-22 142.7 17.1 182 21-238 14-202 (327)
46 1sxj_D Activator 1 41 kDa subu 99.8 1.5E-18 5.2E-23 146.8 14.5 183 20-239 25-226 (353)
47 1d2n_A N-ethylmaleimide-sensit 99.8 2.4E-18 8.1E-23 141.0 14.8 174 32-214 33-210 (272)
48 3m6a_A ATP-dependent protease 99.8 2E-19 6.9E-24 160.7 9.0 189 32-238 81-296 (543)
49 1sxj_B Activator 1 37 kDa subu 99.8 2.8E-18 9.4E-23 143.3 15.1 178 21-238 10-199 (323)
50 1njg_A DNA polymerase III subu 99.8 3.6E-18 1.2E-22 136.3 15.0 178 21-237 12-217 (250)
51 3pxg_A Negative regulator of g 99.8 2.2E-18 7.6E-23 151.5 14.8 172 26-238 174-362 (468)
52 4fcw_A Chaperone protein CLPB; 99.8 6.2E-18 2.1E-22 140.8 16.6 183 33-238 18-258 (311)
53 3pxi_A Negative regulator of g 99.8 7.1E-18 2.4E-22 156.5 18.1 179 32-235 491-701 (758)
54 2z4s_A Chromosomal replication 99.8 2.5E-18 8.5E-23 150.0 14.0 183 26-237 99-295 (440)
55 3hws_A ATP-dependent CLP prote 99.8 5E-18 1.7E-22 144.7 15.3 201 34-236 17-300 (363)
56 1jr3_A DNA polymerase III subu 99.8 8.1E-18 2.8E-22 143.4 15.7 178 21-237 5-210 (373)
57 1qvr_A CLPB protein; coiled co 99.8 2E-18 6.9E-23 161.9 13.0 185 27-237 165-368 (854)
58 2p65_A Hypothetical protein PF 99.8 3.6E-18 1.2E-22 131.2 11.3 152 28-204 18-187 (187)
59 3te6_A Regulatory protein SIR3 99.8 3.1E-18 1.1E-22 142.6 11.4 160 34-219 22-214 (318)
60 1r6b_X CLPA protein; AAA+, N-t 99.8 1E-17 3.5E-22 155.5 15.9 184 28-236 182-384 (758)
61 2qby_B CDC6 homolog 3, cell di 99.8 7.2E-18 2.5E-22 144.2 13.8 179 32-238 20-232 (384)
62 1sxj_C Activator 1 40 kDa subu 99.8 2.3E-17 7.9E-22 139.4 16.2 181 19-239 12-203 (340)
63 1r6b_X CLPA protein; AAA+, N-t 99.8 1.9E-17 6.3E-22 153.7 16.9 182 33-237 459-694 (758)
64 3pxi_A Negative regulator of g 99.8 9.7E-18 3.3E-22 155.5 14.8 172 26-238 174-362 (758)
65 1g41_A Heat shock protein HSLU 99.7 4.8E-19 1.7E-23 153.2 5.1 168 33-212 16-188 (444)
66 1g8p_A Magnesium-chelatase 38 99.7 1.1E-17 3.6E-22 141.5 11.5 165 24-214 16-230 (350)
67 2qby_A CDC6 homolog 1, cell di 99.7 6.3E-17 2.1E-21 138.0 15.6 188 29-238 17-232 (386)
68 1fnn_A CDC6P, cell division co 99.7 1.1E-16 3.7E-21 137.0 16.6 186 30-238 15-228 (389)
69 1um8_A ATP-dependent CLP prote 99.7 8.2E-17 2.8E-21 137.7 15.6 203 33-238 22-319 (376)
70 2r44_A Uncharacterized protein 99.7 1.8E-16 6E-21 133.3 16.7 158 29-219 24-201 (331)
71 3bos_A Putative DNA replicatio 99.7 4.2E-17 1.4E-21 130.4 12.0 174 26-238 22-207 (242)
72 2bjv_A PSP operon transcriptio 99.7 9.2E-17 3.1E-21 131.0 14.0 182 29-240 3-224 (265)
73 1in4_A RUVB, holliday junction 99.7 2.2E-15 7.6E-20 126.9 19.8 184 24-238 17-213 (334)
74 1qvr_A CLPB protein; coiled co 99.7 7.4E-16 2.5E-20 144.6 14.8 184 32-238 558-799 (854)
75 3n70_A Transport activator; si 99.7 2E-16 6.8E-21 117.6 8.5 132 33-203 2-144 (145)
76 1ojl_A Transcriptional regulat 99.7 2.6E-16 8.8E-21 131.0 10.2 182 32-240 2-219 (304)
77 1a5t_A Delta prime, HOLB; zinc 99.6 5.8E-15 2E-19 124.4 16.7 161 36-237 6-194 (334)
78 3co5_A Putative two-component 99.6 1.4E-16 4.7E-21 118.2 5.1 132 33-203 5-142 (143)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.8E-15 9.6E-20 132.1 10.0 156 33-217 23-197 (500)
80 2gno_A DNA polymerase III, gam 99.6 1.4E-14 4.9E-19 120.3 12.5 142 36-216 1-152 (305)
81 3k1j_A LON protease, ATP-depen 99.5 4.2E-14 1.4E-18 128.0 10.1 187 24-238 33-328 (604)
82 3ec2_A DNA replication protein 99.5 6.1E-14 2.1E-18 107.6 9.6 132 26-182 4-144 (180)
83 1w5s_A Origin recognition comp 99.5 5.1E-13 1.7E-17 115.0 14.1 193 30-238 20-250 (412)
84 3f9v_A Minichromosome maintena 99.4 3.7E-14 1.2E-18 127.9 2.3 171 32-218 295-492 (595)
85 2qen_A Walker-type ATPase; unk 99.4 6.5E-11 2.2E-15 99.4 20.6 178 26-234 6-232 (350)
86 1ny5_A Transcriptional regulat 99.3 1.3E-11 4.5E-16 105.8 12.9 180 31-240 136-354 (387)
87 2kjq_A DNAA-related protein; s 99.3 2.7E-12 9.3E-17 95.5 7.4 103 65-198 35-143 (149)
88 2fna_A Conserved hypothetical 99.3 1.8E-10 6.1E-15 96.8 18.2 178 26-236 7-241 (357)
89 3dzd_A Transcriptional regulat 99.3 4.8E-11 1.6E-15 101.6 12.3 179 32-240 129-345 (368)
90 3cmw_A Protein RECA, recombina 99.2 1.4E-11 4.8E-16 120.8 9.3 153 27-180 1015-1217(1706)
91 4akg_A Glutathione S-transfera 99.2 4.8E-11 1.6E-15 121.5 10.6 139 65-218 1266-1433(2695)
92 2w58_A DNAI, primosome compone 99.2 3.8E-11 1.3E-15 93.5 7.5 99 28-137 21-127 (202)
93 2qgz_A Helicase loader, putati 99.0 1.4E-10 4.9E-15 96.4 5.2 97 29-137 121-226 (308)
94 4akg_A Glutathione S-transfera 99.0 3.2E-09 1.1E-13 108.4 14.6 126 66-212 645-789 (2695)
95 1ye8_A Protein THEP1, hypothet 99.0 3.6E-09 1.2E-13 80.8 11.5 122 68-206 2-166 (178)
96 1tue_A Replication protein E1; 99.0 9.7E-10 3.3E-14 85.1 7.2 112 63-201 55-177 (212)
97 2vhj_A Ntpase P4, P4; non- hyd 99.0 1.5E-09 5.1E-14 89.9 8.3 75 63-139 120-196 (331)
98 2r2a_A Uncharacterized protein 98.9 2.1E-09 7.2E-14 83.6 7.0 127 67-206 6-156 (199)
99 3f8t_A Predicted ATPase involv 98.9 2.9E-09 1E-13 92.1 7.8 150 34-207 215-385 (506)
100 3vkg_A Dynein heavy chain, cyt 98.7 1.3E-07 4.6E-12 97.5 15.0 126 67-213 605-750 (3245)
101 3vkg_A Dynein heavy chain, cyt 98.7 4.5E-08 1.5E-12 100.9 11.2 140 64-217 1302-1470(3245)
102 1u0j_A DNA replication protein 98.7 4.3E-08 1.5E-12 79.2 7.1 122 64-215 102-250 (267)
103 1jr3_D DNA polymerase III, del 98.7 1.4E-07 4.9E-12 79.2 10.5 147 65-239 17-176 (343)
104 2w0m_A SSO2452; RECA, SSPF, un 98.6 2.6E-07 9E-12 72.7 11.1 37 62-98 19-58 (235)
105 3gfo_A Cobalt import ATP-bindi 98.6 2.3E-08 7.8E-13 81.6 4.8 50 122-184 158-207 (275)
106 1svm_A Large T antigen; AAA+ f 98.6 9.5E-08 3.3E-12 81.3 8.7 116 60-197 163-279 (377)
107 3tui_C Methionine import ATP-b 98.6 2.7E-08 9.4E-13 84.0 5.1 48 122-182 178-225 (366)
108 4g1u_C Hemin import ATP-bindin 98.6 2.1E-08 7E-13 81.5 4.1 45 125-182 165-209 (266)
109 3cmu_A Protein RECA, recombina 98.6 1.2E-07 4.2E-12 94.5 9.6 84 56-139 1414-1519(2050)
110 3rlf_A Maltose/maltodextrin im 98.6 2.4E-08 8.2E-13 84.9 3.8 31 60-90 23-53 (381)
111 3fvq_A Fe(3+) IONS import ATP- 98.6 4.1E-08 1.4E-12 82.8 5.0 31 60-90 24-54 (359)
112 1vpl_A ABC transporter, ATP-bi 98.6 7.2E-08 2.5E-12 77.9 6.2 46 123-182 162-207 (256)
113 2ehv_A Hypothetical protein PH 98.6 2.2E-07 7.7E-12 74.1 8.8 114 62-184 26-185 (251)
114 1n0w_A DNA repair protein RAD5 98.6 1.7E-07 5.9E-12 74.5 7.9 78 62-139 20-133 (243)
115 1z6t_A APAF-1, apoptotic prote 98.5 4E-06 1.4E-10 75.4 16.9 52 26-88 118-169 (591)
116 2yyz_A Sugar ABC transporter, 98.5 5.9E-08 2E-12 82.0 4.6 49 121-182 147-195 (359)
117 1z47_A CYSA, putative ABC-tran 98.5 5.2E-08 1.8E-12 82.2 3.9 31 60-90 35-65 (355)
118 3tif_A Uncharacterized ABC tra 98.5 4.5E-07 1.6E-11 72.2 8.6 48 122-182 160-207 (235)
119 2cvh_A DNA repair and recombin 98.5 1.6E-06 5.4E-11 67.7 11.7 40 62-101 16-55 (220)
120 2pcj_A ABC transporter, lipopr 98.5 5E-07 1.7E-11 71.4 8.8 45 124-182 157-201 (224)
121 2zr9_A Protein RECA, recombina 98.5 1.8E-07 6.1E-12 78.9 6.5 78 62-139 57-153 (349)
122 2it1_A 362AA long hypothetical 98.5 6E-08 2E-12 82.0 3.5 31 60-90 23-53 (362)
123 3hr8_A Protein RECA; alpha and 98.5 4E-07 1.4E-11 76.8 8.5 78 62-139 57-153 (356)
124 4gp7_A Metallophosphoesterase; 98.5 1.5E-07 5.2E-12 71.2 5.3 23 63-85 6-28 (171)
125 3d31_A Sulfate/molybdate ABC t 98.5 9.5E-08 3.3E-12 80.4 4.5 47 123-182 143-189 (348)
126 4a74_A DNA repair and recombin 98.5 8.4E-07 2.9E-11 69.8 9.6 29 62-90 21-49 (231)
127 2olj_A Amino acid ABC transpor 98.4 2.1E-07 7.1E-12 75.4 5.6 46 123-182 175-220 (263)
128 3jvv_A Twitching mobility prot 98.4 7.5E-07 2.6E-11 75.3 9.1 71 64-134 121-205 (356)
129 1ji0_A ABC transporter; ATP bi 98.4 1.4E-07 4.7E-12 75.5 4.4 46 123-182 155-200 (240)
130 3upu_A ATP-dependent DNA helic 98.4 6.4E-07 2.2E-11 78.3 8.9 62 15-90 7-69 (459)
131 2ixe_A Antigen peptide transpo 98.4 5.9E-07 2E-11 73.1 8.0 49 121-182 170-218 (271)
132 1v43_A Sugar-binding transport 98.4 6.5E-08 2.2E-12 82.1 2.2 31 60-90 31-61 (372)
133 2onk_A Molybdate/tungstate ABC 98.4 8E-08 2.7E-12 76.8 2.6 48 122-182 141-188 (240)
134 1xp8_A RECA protein, recombina 98.4 1.1E-06 3.7E-11 74.5 9.8 78 62-139 70-166 (366)
135 2yz2_A Putative ABC transporte 98.4 2.7E-07 9.3E-12 74.9 5.8 49 122-184 153-201 (266)
136 3nh6_A ATP-binding cassette SU 98.4 1.1E-06 3.9E-11 72.5 9.5 31 60-90 74-104 (306)
137 3sfz_A APAF-1, apoptotic pepti 98.4 8.8E-06 3E-10 78.8 17.0 155 24-218 116-301 (1249)
138 2nq2_C Hypothetical ABC transp 98.4 1.5E-06 5.3E-11 69.9 9.7 49 121-182 142-190 (253)
139 1g6h_A High-affinity branched- 98.4 2.8E-07 9.6E-12 74.4 5.0 48 123-184 169-216 (257)
140 2ff7_A Alpha-hemolysin translo 98.4 2.2E-06 7.4E-11 68.8 10.1 48 121-183 159-206 (247)
141 2cbz_A Multidrug resistance-as 98.4 1.1E-06 3.8E-11 70.0 8.1 31 60-90 25-55 (237)
142 1g29_1 MALK, maltose transport 98.4 1.2E-06 4.1E-11 74.4 8.7 31 60-90 23-53 (372)
143 3lda_A DNA repair protein RAD5 98.3 9.6E-07 3.3E-11 75.7 7.8 79 62-140 174-288 (400)
144 2qi9_C Vitamin B12 import ATP- 98.3 1.5E-06 5.2E-11 69.8 8.3 32 60-91 20-51 (249)
145 2z43_A DNA repair and recombin 98.3 7.8E-07 2.7E-11 74.2 6.8 85 55-139 94-217 (324)
146 2d2e_A SUFC protein; ABC-ATPas 98.3 3.6E-07 1.2E-11 73.5 4.5 46 124-183 160-205 (250)
147 1b0u_A Histidine permease; ABC 98.3 1.5E-06 5.1E-11 70.4 8.1 46 123-182 169-214 (262)
148 1pzn_A RAD51, DNA repair and r 98.3 1E-06 3.6E-11 74.2 7.4 30 61-90 126-155 (349)
149 1u94_A RECA protein, recombina 98.3 9.1E-07 3.1E-11 74.7 7.0 78 62-139 59-155 (356)
150 1v5w_A DMC1, meiotic recombina 98.3 1.3E-06 4.5E-11 73.4 7.9 85 55-139 109-233 (343)
151 2dr3_A UPF0273 protein PH0284; 98.3 3.8E-06 1.3E-10 66.6 10.2 37 62-98 19-58 (247)
152 3gd7_A Fusion complex of cysti 98.3 1.8E-07 6.3E-12 79.8 2.5 31 60-90 41-71 (390)
153 2a5y_B CED-4; apoptosis; HET: 98.3 2.4E-05 8.3E-10 69.8 16.2 144 35-216 131-306 (549)
154 2iut_A DNA translocase FTSK; n 98.3 9.8E-06 3.4E-10 72.0 13.3 74 127-213 345-420 (574)
155 1oxx_K GLCV, glucose, ABC tran 98.3 1.3E-06 4.4E-11 73.7 7.3 31 60-90 25-55 (353)
156 1sgw_A Putative ABC transporte 98.3 2.2E-07 7.4E-12 73.0 2.4 31 60-90 29-59 (214)
157 2eyu_A Twitching motility prot 98.3 1.5E-06 5.1E-11 70.3 7.0 71 64-134 23-107 (261)
158 2ghi_A Transport protein; mult 98.3 2.6E-06 8.8E-11 68.9 8.1 49 121-184 169-217 (260)
159 2pjz_A Hypothetical protein ST 98.3 6.1E-06 2.1E-10 66.7 10.3 45 122-183 143-187 (263)
160 1mv5_A LMRA, multidrug resista 98.3 9.3E-07 3.2E-11 70.7 5.4 31 60-90 22-52 (243)
161 3thx_B DNA mismatch repair pro 98.3 4.5E-06 1.5E-10 78.4 10.5 109 61-182 668-797 (918)
162 2pze_A Cystic fibrosis transme 98.2 3.4E-06 1.2E-10 66.9 8.1 31 60-90 28-58 (229)
163 3qf4_B Uncharacterized ABC tra 98.2 7.1E-06 2.4E-10 74.0 11.2 52 117-183 501-552 (598)
164 1cr0_A DNA primase/helicase; R 98.2 9.8E-06 3.4E-10 66.5 11.0 30 61-90 30-59 (296)
165 1nlf_A Regulatory protein REPA 98.2 7.8E-06 2.7E-10 66.6 10.2 29 62-90 26-54 (279)
166 2b8t_A Thymidine kinase; deoxy 98.2 8.7E-06 3E-10 64.1 9.7 72 65-137 11-101 (223)
167 2ius_A DNA translocase FTSK; n 98.2 1E-05 3.5E-10 71.2 10.9 75 126-213 297-374 (512)
168 3j16_B RLI1P; ribosome recycli 98.2 4E-06 1.4E-10 75.6 8.5 49 121-183 235-283 (608)
169 3ozx_A RNAse L inhibitor; ATP 98.2 1.1E-06 3.8E-11 78.2 4.7 107 63-182 291-447 (538)
170 2ihy_A ABC transporter, ATP-bi 98.2 4.1E-06 1.4E-10 68.4 7.7 31 60-90 41-71 (279)
171 3vaa_A Shikimate kinase, SK; s 98.2 1.1E-06 3.9E-11 67.9 4.1 37 62-98 21-57 (199)
172 1yqt_A RNAse L inhibitor; ATP- 98.2 3.5E-06 1.2E-10 75.1 7.6 51 118-182 169-219 (538)
173 4a82_A Cystic fibrosis transme 98.2 4.8E-06 1.6E-10 74.9 8.5 51 119-184 489-539 (578)
174 3io5_A Recombination and repai 98.2 4.8E-06 1.6E-10 68.7 7.7 77 62-140 25-126 (333)
175 3ozx_A RNAse L inhibitor; ATP 98.2 5.2E-06 1.8E-10 73.9 8.3 51 118-183 149-199 (538)
176 3qf4_A ABC transporter, ATP-bi 98.1 1.1E-05 3.8E-10 72.6 10.4 50 118-182 490-539 (587)
177 2i3b_A HCR-ntpase, human cance 98.1 5.5E-06 1.9E-10 63.7 6.8 24 67-90 2-25 (189)
178 1qhx_A CPT, protein (chloramph 98.1 3.3E-06 1.1E-10 63.8 5.5 34 66-99 3-36 (178)
179 2r6a_A DNAB helicase, replicat 98.1 2E-05 6.9E-10 68.7 11.0 37 62-98 199-239 (454)
180 2i1q_A DNA repair and recombin 98.1 3.9E-06 1.3E-10 69.8 6.1 28 62-89 94-121 (322)
181 3thx_A DNA mismatch repair pro 98.1 1.8E-05 6.2E-10 74.5 11.1 107 63-182 659-786 (934)
182 2orw_A Thymidine kinase; TMTK, 98.1 2.2E-06 7.4E-11 65.6 4.0 25 66-90 3-27 (184)
183 3b5x_A Lipid A export ATP-bind 98.1 6.4E-06 2.2E-10 74.1 7.5 31 60-90 363-393 (582)
184 3cmu_A Protein RECA, recombina 98.1 1.7E-05 5.9E-10 79.4 10.9 78 62-139 1077-1173(2050)
185 3b60_A Lipid A export ATP-bind 98.1 1.7E-05 5.7E-10 71.4 9.9 49 121-184 494-542 (582)
186 3trf_A Shikimate kinase, SK; a 98.1 2.5E-06 8.5E-11 64.9 3.9 33 66-98 5-37 (185)
187 2rhm_A Putative kinase; P-loop 98.1 2.8E-06 9.6E-11 64.9 4.2 35 64-98 3-37 (193)
188 2ewv_A Twitching motility prot 98.1 4.5E-06 1.5E-10 71.0 5.7 75 60-134 130-218 (372)
189 2zts_A Putative uncharacterize 98.0 2.4E-05 8.3E-10 62.0 9.5 37 62-98 26-66 (251)
190 3bk7_A ABC transporter ATP-bin 98.0 8.6E-06 2.9E-10 73.5 7.3 51 118-182 239-289 (607)
191 1zp6_A Hypothetical protein AT 98.0 3.6E-06 1.2E-10 64.3 4.2 38 63-100 6-43 (191)
192 1vma_A Cell division protein F 98.0 0.00011 3.7E-09 60.7 13.0 73 64-136 102-197 (306)
193 3j16_B RLI1P; ribosome recycli 98.0 6.1E-06 2.1E-10 74.4 5.7 52 118-182 478-529 (608)
194 2bbs_A Cystic fibrosis transme 98.0 1.7E-05 5.8E-10 65.0 7.9 31 60-90 58-88 (290)
195 3bk7_A ABC transporter ATP-bin 98.0 8.2E-06 2.8E-10 73.6 6.5 47 123-182 487-533 (607)
196 3kb2_A SPBC2 prophage-derived 98.0 5.2E-06 1.8E-10 62.1 4.3 31 68-98 3-33 (173)
197 2q6t_A DNAB replication FORK h 98.0 3.5E-05 1.2E-09 67.0 10.1 38 62-99 196-237 (444)
198 1y63_A LMAJ004144AAA protein; 98.0 4.3E-06 1.5E-10 63.8 3.9 34 64-97 8-42 (184)
199 4f4c_A Multidrug resistance pr 98.0 2.3E-05 7.8E-10 76.7 9.8 33 60-92 438-470 (1321)
200 1kag_A SKI, shikimate kinase I 98.0 5.7E-06 2E-10 62.1 4.4 31 66-96 4-34 (173)
201 3iij_A Coilin-interacting nucl 98.0 5E-06 1.7E-10 63.0 4.0 34 64-97 9-42 (180)
202 1tf7_A KAIC; homohexamer, hexa 98.0 3.3E-05 1.1E-09 68.6 9.8 110 62-181 277-417 (525)
203 2pt7_A CAG-ALFA; ATPase, prote 98.0 9.4E-06 3.2E-10 67.9 5.9 71 64-134 169-249 (330)
204 1yqt_A RNAse L inhibitor; ATP- 98.0 9.1E-06 3.1E-10 72.4 6.1 106 64-182 310-463 (538)
205 3bh0_A DNAB-like replicative h 98.0 0.00013 4.3E-09 60.5 12.5 37 62-98 64-103 (315)
206 1g5t_A COB(I)alamin adenosyltr 97.9 8.9E-05 3E-09 56.9 10.6 103 66-181 28-163 (196)
207 1zuh_A Shikimate kinase; alpha 97.9 6E-06 2E-10 61.8 3.8 32 67-98 8-39 (168)
208 1via_A Shikimate kinase; struc 97.9 5.3E-06 1.8E-10 62.6 3.4 31 68-98 6-36 (175)
209 1gvn_B Zeta; postsegregational 97.9 1.5E-05 5.1E-10 65.3 6.3 36 64-99 31-66 (287)
210 2iyv_A Shikimate kinase, SK; t 97.9 6E-06 2E-10 62.8 3.6 32 67-98 3-34 (184)
211 2r8r_A Sensor protein; KDPD, P 97.9 8.2E-05 2.8E-09 58.4 9.9 33 67-99 7-42 (228)
212 1tf7_A KAIC; homohexamer, hexa 97.9 5.6E-05 1.9E-09 67.1 9.7 116 60-184 32-188 (525)
213 2yl4_A ATP-binding cassette SU 97.9 4.7E-05 1.6E-09 68.7 9.3 47 121-182 497-543 (595)
214 4f4c_A Multidrug resistance pr 97.9 3.4E-05 1.2E-09 75.6 9.0 31 60-90 1099-1129(1321)
215 2c9o_A RUVB-like 1; hexameric 97.9 3.1E-05 1.1E-09 67.5 7.9 90 126-237 296-398 (456)
216 2p5t_B PEZT; postsegregational 97.9 2E-05 6.9E-10 63.2 6.2 39 64-102 30-68 (253)
217 2cdn_A Adenylate kinase; phosp 97.9 9.9E-06 3.4E-10 62.5 4.2 33 65-97 19-51 (201)
218 2c95_A Adenylate kinase 1; tra 97.9 8.7E-06 3E-10 62.3 3.8 34 65-98 8-41 (196)
219 2iw3_A Elongation factor 3A; a 97.9 2E-05 6.7E-10 74.3 6.8 48 119-183 560-607 (986)
220 1knq_A Gluconate kinase; ALFA/ 97.9 1.1E-05 3.6E-10 60.8 4.1 33 65-97 7-39 (175)
221 2ze6_A Isopentenyl transferase 97.9 1E-05 3.5E-10 65.0 4.2 33 68-100 3-35 (253)
222 3t61_A Gluconokinase; PSI-biol 97.9 1.2E-05 4E-10 62.2 4.3 33 66-98 18-50 (202)
223 1tev_A UMP-CMP kinase; ploop, 97.8 9.4E-06 3.2E-10 61.9 3.7 32 66-97 3-34 (196)
224 4eun_A Thermoresistant glucoki 97.8 1.4E-05 4.9E-10 61.6 4.7 33 64-96 27-59 (200)
225 3cm0_A Adenylate kinase; ATP-b 97.8 1.1E-05 3.6E-10 61.4 3.9 32 66-97 4-35 (186)
226 1aky_A Adenylate kinase; ATP:A 97.8 1.1E-05 3.7E-10 63.2 3.9 33 65-97 3-35 (220)
227 3e1s_A Exodeoxyribonuclease V, 97.8 2.9E-05 9.9E-10 69.6 7.0 32 66-97 204-238 (574)
228 1zd8_A GTP:AMP phosphotransfer 97.8 1.1E-05 3.8E-10 63.5 3.6 33 65-97 6-38 (227)
229 3ux8_A Excinuclease ABC, A sub 97.8 1.5E-05 5.2E-10 72.8 4.9 50 119-182 214-265 (670)
230 1e6c_A Shikimate kinase; phosp 97.8 1.2E-05 3.9E-10 60.4 3.4 31 68-98 4-34 (173)
231 3dm5_A SRP54, signal recogniti 97.8 0.00035 1.2E-08 60.4 13.0 73 65-137 99-194 (443)
232 3lw7_A Adenylate kinase relate 97.8 1.2E-05 4.1E-10 60.1 3.5 29 68-97 3-31 (179)
233 1qf9_A UMP/CMP kinase, protein 97.8 1.5E-05 5.1E-10 60.7 4.1 32 66-97 6-37 (194)
234 3be4_A Adenylate kinase; malar 97.8 1.1E-05 3.7E-10 63.2 3.2 32 66-97 5-36 (217)
235 1wb9_A DNA mismatch repair pro 97.8 9.2E-05 3.1E-09 68.8 9.9 26 64-89 605-630 (800)
236 1kht_A Adenylate kinase; phosp 97.8 1.5E-05 5.3E-10 60.6 4.0 26 66-91 3-28 (192)
237 2pez_A Bifunctional 3'-phospho 97.8 2.7E-05 9.2E-10 58.9 5.3 37 64-100 3-42 (179)
238 2bwj_A Adenylate kinase 5; pho 97.8 1.3E-05 4.5E-10 61.4 3.5 32 66-97 12-43 (199)
239 3dl0_A Adenylate kinase; phosp 97.8 1.4E-05 4.9E-10 62.3 3.7 30 68-97 2-31 (216)
240 2pt5_A Shikimate kinase, SK; a 97.8 1.6E-05 5.3E-10 59.4 3.8 31 68-98 2-32 (168)
241 3kl4_A SRP54, signal recogniti 97.8 0.00019 6.7E-09 61.9 11.1 73 65-137 96-191 (433)
242 3umf_A Adenylate kinase; rossm 97.8 2.1E-05 7.3E-10 61.6 4.6 33 63-95 26-58 (217)
243 4a1f_A DNAB helicase, replicat 97.8 8.7E-05 3E-09 62.0 8.6 37 62-98 42-81 (338)
244 3g5u_A MCG1178, multidrug resi 97.8 8.6E-05 2.9E-09 72.6 9.8 32 60-91 410-441 (1284)
245 2o8b_B DNA mismatch repair pro 97.8 0.00018 6E-09 68.6 11.6 22 66-87 789-810 (1022)
246 2vli_A Antibiotic resistance p 97.8 1.4E-05 4.7E-10 60.5 3.4 30 66-95 5-34 (183)
247 2yhs_A FTSY, cell division pro 97.8 0.00039 1.3E-08 60.8 12.8 29 62-90 289-317 (503)
248 3fb4_A Adenylate kinase; psych 97.8 1.6E-05 5.4E-10 62.0 3.7 30 68-97 2-31 (216)
249 1p9r_A General secretion pathw 97.8 0.00012 4E-09 63.1 9.4 50 28-91 143-192 (418)
250 1ukz_A Uridylate kinase; trans 97.8 1.8E-05 6E-10 61.1 3.9 33 66-98 15-47 (203)
251 3bgw_A DNAB-like replicative h 97.8 0.00016 5.3E-09 62.9 10.2 37 62-98 193-232 (444)
252 3tlx_A Adenylate kinase 2; str 97.8 1.8E-05 6E-10 63.2 3.9 35 64-98 27-61 (243)
253 1ly1_A Polynucleotide kinase; 97.7 1.7E-05 6E-10 59.7 3.5 30 67-96 3-33 (181)
254 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 0.00013 4.4E-09 58.7 8.8 35 66-100 4-41 (260)
255 1ak2_A Adenylate kinase isoenz 97.7 3.1E-05 1.1E-09 61.3 4.9 33 65-97 15-47 (233)
256 1zak_A Adenylate kinase; ATP:A 97.7 1.3E-05 4.5E-10 62.8 2.6 32 65-96 4-35 (222)
257 3g5u_A MCG1178, multidrug resi 97.7 8.9E-05 3.1E-09 72.4 8.9 52 118-184 1182-1233(1284)
258 2bbw_A Adenylate kinase 4, AK4 97.7 2.9E-05 9.9E-10 61.9 4.6 32 65-96 26-57 (246)
259 3uie_A Adenylyl-sulfate kinase 97.7 4E-05 1.4E-09 59.1 5.3 38 64-101 23-63 (200)
260 3sr0_A Adenylate kinase; phosp 97.7 2.9E-05 9.8E-10 60.5 4.4 29 68-96 2-30 (206)
261 3nwj_A ATSK2; P loop, shikimat 97.7 1.9E-05 6.4E-10 63.4 3.4 33 66-98 48-80 (250)
262 1htw_A HI0065; nucleotide-bind 97.7 2.8E-05 9.7E-10 57.9 4.2 31 60-90 27-57 (158)
263 1cke_A CK, MSSA, protein (cyti 97.7 3.1E-05 1.1E-09 60.7 4.5 30 67-96 6-35 (227)
264 1kgd_A CASK, peripheral plasma 97.7 2.7E-05 9.2E-10 59.1 4.0 28 64-91 3-30 (180)
265 1rz3_A Hypothetical protein rb 97.7 0.00013 4.6E-09 56.2 7.8 35 64-98 20-57 (201)
266 2v54_A DTMP kinase, thymidylat 97.7 4.4E-05 1.5E-09 58.7 4.9 34 65-98 3-37 (204)
267 3ux8_A Excinuclease ABC, A sub 97.6 0.00012 4E-09 67.0 8.2 43 126-182 565-607 (670)
268 2pbr_A DTMP kinase, thymidylat 97.6 5.5E-05 1.9E-09 57.6 5.0 31 68-98 2-35 (195)
269 4e22_A Cytidylate kinase; P-lo 97.6 4.9E-05 1.7E-09 61.0 4.8 32 65-96 26-57 (252)
270 1e4v_A Adenylate kinase; trans 97.6 4.4E-05 1.5E-09 59.5 4.4 30 68-97 2-31 (214)
271 3tr0_A Guanylate kinase, GMP k 97.6 3.8E-05 1.3E-09 59.1 4.0 27 64-90 5-31 (205)
272 2ga8_A Hypothetical 39.9 kDa p 97.6 3.6E-05 1.2E-09 64.6 4.0 52 36-96 3-54 (359)
273 2if2_A Dephospho-COA kinase; a 97.6 2.7E-05 9.1E-10 60.1 3.1 30 68-98 3-32 (204)
274 3c8u_A Fructokinase; YP_612366 97.6 6.7E-05 2.3E-09 58.2 5.4 28 64-91 20-47 (208)
275 2jaq_A Deoxyguanosine kinase; 97.6 4.2E-05 1.4E-09 58.7 4.2 29 68-96 2-30 (205)
276 1vt4_I APAF-1 related killer D 97.6 0.00029 9.9E-09 66.9 10.3 43 35-89 131-173 (1221)
277 3crm_A TRNA delta(2)-isopenten 97.6 4.1E-05 1.4E-09 63.5 4.3 34 67-100 6-39 (323)
278 2j41_A Guanylate kinase; GMP, 97.6 3.3E-05 1.1E-09 59.5 3.5 28 63-90 3-30 (207)
279 3r20_A Cytidylate kinase; stru 97.6 5.1E-05 1.7E-09 60.1 4.6 31 66-96 9-39 (233)
280 1ewq_A DNA mismatch repair pro 97.6 0.00044 1.5E-08 63.9 11.5 25 66-90 576-600 (765)
281 2fz4_A DNA repair protein RAD2 97.6 0.00012 4.2E-09 58.0 6.8 32 67-98 109-140 (237)
282 1z6g_A Guanylate kinase; struc 97.6 4E-05 1.4E-09 60.1 3.7 31 60-90 17-47 (218)
283 2xb4_A Adenylate kinase; ATP-b 97.6 5.9E-05 2E-09 59.2 4.4 30 68-97 2-31 (223)
284 2iw3_A Elongation factor 3A; a 97.6 0.0001 3.4E-09 69.6 6.6 31 60-90 693-723 (986)
285 1q57_A DNA primase/helicase; d 97.6 0.00041 1.4E-08 61.2 10.2 37 62-98 238-278 (503)
286 1znw_A Guanylate kinase, GMP k 97.6 5.2E-05 1.8E-09 58.8 3.8 29 63-91 17-45 (207)
287 2wwf_A Thymidilate kinase, put 97.5 2.9E-05 1E-09 60.1 2.3 29 65-93 9-37 (212)
288 1nks_A Adenylate kinase; therm 97.5 3.9E-05 1.3E-09 58.4 3.0 24 68-91 3-26 (194)
289 2z0h_A DTMP kinase, thymidylat 97.5 7.8E-05 2.7E-09 56.9 4.7 31 68-98 2-35 (197)
290 2grj_A Dephospho-COA kinase; T 97.5 4.9E-05 1.7E-09 58.4 3.3 32 67-98 13-44 (192)
291 2qor_A Guanylate kinase; phosp 97.5 6.3E-05 2.2E-09 58.2 4.0 28 64-91 10-37 (204)
292 3cmw_A Protein RECA, recombina 97.5 0.00028 9.5E-09 70.0 9.3 87 56-142 1418-1526(1706)
293 2qt1_A Nicotinamide riboside k 97.5 4.2E-05 1.4E-09 59.2 2.9 33 64-96 19-52 (207)
294 1jjv_A Dephospho-COA kinase; P 97.5 5.8E-05 2E-09 58.3 3.7 29 68-97 4-32 (206)
295 2plr_A DTMP kinase, probable t 97.5 6.7E-05 2.3E-09 57.9 4.1 28 66-93 4-31 (213)
296 1uf9_A TT1252 protein; P-loop, 97.5 5.9E-05 2E-09 57.9 3.6 33 65-98 7-39 (203)
297 1lvg_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 58.3 3.4 27 65-91 3-29 (198)
298 2v9p_A Replication protein E1; 97.5 6.9E-05 2.4E-09 61.8 4.2 35 60-94 120-154 (305)
299 3asz_A Uridine kinase; cytidin 97.5 6.5E-05 2.2E-09 58.2 3.9 35 64-98 4-38 (211)
300 3ney_A 55 kDa erythrocyte memb 97.5 7.7E-05 2.6E-09 57.5 4.1 31 61-91 14-44 (197)
301 1nn5_A Similar to deoxythymidy 97.5 4.1E-05 1.4E-09 59.4 2.5 28 65-92 8-35 (215)
302 3ake_A Cytidylate kinase; CMP 97.5 8.4E-05 2.9E-09 57.2 4.3 31 68-98 4-34 (208)
303 3tau_A Guanylate kinase, GMP k 97.5 6.5E-05 2.2E-09 58.3 3.6 28 65-92 7-34 (208)
304 4aby_A DNA repair protein RECN 97.5 0.0004 1.4E-08 59.5 8.9 47 121-182 309-357 (415)
305 2yvu_A Probable adenylyl-sulfa 97.5 0.00016 5.6E-09 54.8 5.7 36 64-99 11-49 (186)
306 3a8t_A Adenylate isopentenyltr 97.5 6.2E-05 2.1E-09 62.7 3.3 36 66-101 40-75 (339)
307 3a00_A Guanylate kinase, GMP k 97.5 7.1E-05 2.4E-09 57.0 3.4 25 67-91 2-26 (186)
308 3b9q_A Chloroplast SRP recepto 97.5 0.00012 4.3E-09 60.2 5.1 29 62-90 96-124 (302)
309 1xx6_A Thymidine kinase; NESG, 97.4 0.0003 1E-08 53.9 6.9 33 65-97 7-42 (191)
310 2jeo_A Uridine-cytidine kinase 97.4 8.8E-05 3E-09 59.1 4.0 34 60-93 19-52 (245)
311 1vht_A Dephospho-COA kinase; s 97.4 0.00012 4.2E-09 57.0 4.7 31 66-97 4-34 (218)
312 2bdt_A BH3686; alpha-beta prot 97.4 9E-05 3.1E-09 56.4 3.7 26 67-92 3-28 (189)
313 1q3t_A Cytidylate kinase; nucl 97.4 0.00014 4.9E-09 57.5 4.8 34 64-97 14-47 (236)
314 1s96_A Guanylate kinase, GMP k 97.4 0.00011 3.8E-09 57.7 3.9 28 64-91 14-41 (219)
315 1uj2_A Uridine-cytidine kinase 97.4 0.00021 7.2E-09 57.1 5.6 39 65-103 21-67 (252)
316 2og2_A Putative signal recogni 97.4 0.00016 5.6E-09 60.9 4.9 29 62-90 153-181 (359)
317 3foz_A TRNA delta(2)-isopenten 97.4 0.00015 5.3E-09 59.6 4.5 35 66-100 10-44 (316)
318 3exa_A TRNA delta(2)-isopenten 97.4 0.00015 5.1E-09 59.8 4.4 34 67-100 4-37 (322)
319 1ex7_A Guanylate kinase; subst 97.4 0.00017 5.8E-09 55.1 4.4 25 67-91 2-26 (186)
320 1w4r_A Thymidine kinase; type 97.3 0.00081 2.8E-08 51.5 8.1 33 66-98 20-55 (195)
321 3d3q_A TRNA delta(2)-isopenten 97.3 0.00012 4.1E-09 61.1 3.6 33 67-99 8-40 (340)
322 3lnc_A Guanylate kinase, GMP k 97.3 6.5E-05 2.2E-09 59.2 1.9 30 61-90 22-52 (231)
323 2h92_A Cytidylate kinase; ross 97.3 0.00019 6.4E-09 55.9 4.5 31 67-97 4-34 (219)
324 2xau_A PRE-mRNA-splicing facto 97.3 0.0018 6.2E-08 60.1 11.5 61 27-89 70-132 (773)
325 2oap_1 GSPE-2, type II secreti 97.3 0.00013 4.6E-09 64.4 3.8 72 64-135 258-343 (511)
326 1m7g_A Adenylylsulfate kinase; 97.3 0.00017 5.8E-09 56.0 3.9 36 64-99 23-62 (211)
327 2px0_A Flagellar biosynthesis 97.3 0.00087 3E-08 55.0 8.2 35 65-99 104-142 (296)
328 2f6r_A COA synthase, bifunctio 97.3 0.00015 5.3E-09 59.0 3.6 31 66-97 75-105 (281)
329 2gza_A Type IV secretion syste 97.3 0.00023 7.8E-09 60.2 4.5 74 62-135 171-262 (361)
330 2zu0_C Probable ATP-dependent 97.2 0.00013 4.4E-09 59.1 2.7 46 124-183 181-226 (267)
331 3aez_A Pantothenate kinase; tr 97.2 0.00021 7.2E-09 59.1 4.1 29 63-91 87-115 (312)
332 1ltq_A Polynucleotide kinase; 97.2 0.00014 4.7E-09 59.6 2.7 30 67-96 3-33 (301)
333 1w36_D RECD, exodeoxyribonucle 97.2 0.0014 4.9E-08 59.1 9.5 25 66-90 164-188 (608)
334 3ice_A Transcription terminati 97.2 0.0028 9.5E-08 53.8 10.4 118 62-181 170-325 (422)
335 1g41_A Heat shock protein HSLU 97.2 0.0013 4.6E-08 56.8 8.7 121 112-236 239-380 (444)
336 2j9r_A Thymidine kinase; TK1, 97.2 0.0018 6.2E-08 50.3 8.6 33 66-98 28-63 (214)
337 3b6e_A Interferon-induced heli 97.2 0.0026 8.8E-08 48.9 9.4 24 67-90 49-72 (216)
338 4eaq_A DTMP kinase, thymidylat 97.1 0.00034 1.2E-08 55.2 4.2 28 64-91 24-51 (229)
339 2qmh_A HPR kinase/phosphorylas 97.1 0.00024 8E-09 54.7 3.1 34 66-100 34-67 (205)
340 1odf_A YGR205W, hypothetical 3 97.1 0.00066 2.3E-08 55.5 6.0 29 64-92 29-57 (290)
341 3eph_A TRNA isopentenyltransfe 97.1 0.00034 1.2E-08 59.6 4.2 33 67-99 3-35 (409)
342 1c9k_A COBU, adenosylcobinamid 97.1 0.00075 2.6E-08 51.1 5.6 32 69-101 2-33 (180)
343 2j37_W Signal recognition part 97.1 0.0017 5.9E-08 57.1 8.7 35 65-99 100-137 (504)
344 2qm8_A GTPase/ATPase; G protei 97.1 0.0025 8.5E-08 53.2 9.2 29 62-90 51-79 (337)
345 3zvl_A Bifunctional polynucleo 97.1 0.00018 6.2E-09 61.9 2.3 31 66-96 258-288 (416)
346 3fdi_A Uncharacterized protein 97.1 0.00046 1.6E-08 53.3 4.4 30 67-96 7-36 (201)
347 3b85_A Phosphate starvation-in 97.1 0.00024 8.4E-09 55.2 2.8 25 65-89 21-45 (208)
348 1qde_A EIF4A, translation init 97.1 0.0055 1.9E-07 47.5 10.6 61 26-88 11-74 (224)
349 3k53_A Ferrous iron transport 97.1 0.00091 3.1E-08 54.0 6.2 23 67-89 4-26 (271)
350 3gmt_A Adenylate kinase; ssgci 97.1 0.00052 1.8E-08 54.1 4.4 31 67-97 9-39 (230)
351 1sq5_A Pantothenate kinase; P- 97.0 0.00084 2.9E-08 55.3 5.8 28 64-91 78-105 (308)
352 3e70_C DPA, signal recognition 97.0 0.00091 3.1E-08 55.7 6.1 27 64-90 127-153 (328)
353 3lxx_A GTPase IMAP family memb 97.0 0.0016 5.4E-08 51.4 7.2 24 66-89 29-52 (239)
354 1ls1_A Signal recognition part 97.0 0.0057 1.9E-07 50.1 10.5 90 65-163 97-209 (295)
355 1gtv_A TMK, thymidylate kinase 97.0 0.00018 6E-09 55.7 1.2 24 68-91 2-25 (214)
356 1rj9_A FTSY, signal recognitio 97.0 0.00048 1.6E-08 56.8 3.9 26 65-90 101-126 (304)
357 2gxq_A Heat resistant RNA depe 97.0 0.0039 1.3E-07 47.7 8.9 24 66-89 38-62 (207)
358 3kta_A Chromosome segregation 97.0 0.00052 1.8E-08 51.7 3.8 25 68-92 28-52 (182)
359 1j8m_F SRP54, signal recogniti 97.0 0.0021 7.2E-08 52.7 7.7 72 66-137 98-192 (297)
360 2gj8_A MNME, tRNA modification 97.0 0.0016 5.6E-08 48.5 6.5 24 66-89 4-27 (172)
361 3tqc_A Pantothenate kinase; bi 97.0 0.00052 1.8E-08 56.9 4.0 27 65-91 91-117 (321)
362 3lxw_A GTPase IMAP family memb 97.0 0.0021 7.3E-08 51.1 7.4 23 66-88 21-43 (247)
363 1x6v_B Bifunctional 3'-phospho 97.0 0.00068 2.3E-08 61.1 4.9 35 65-99 51-88 (630)
364 4b3f_X DNA-binding protein smu 97.0 0.0012 4E-08 60.1 6.4 36 37-87 191-226 (646)
365 3sop_A Neuronal-specific septi 96.9 0.00045 1.5E-08 55.9 3.3 24 67-90 3-26 (270)
366 1lw7_A Transcriptional regulat 96.9 0.00058 2E-08 57.7 3.8 28 66-93 170-197 (365)
367 3kw6_A 26S protease regulatory 96.9 0.00096 3.3E-08 43.2 4.0 38 201-238 1-38 (78)
368 1t6n_A Probable ATP-dependent 96.9 0.015 5E-07 44.9 11.5 58 29-88 14-73 (220)
369 1np6_A Molybdopterin-guanine d 96.9 0.00077 2.6E-08 50.8 3.9 25 66-90 6-30 (174)
370 3pih_A Uvrabc system protein A 96.9 0.002 6.7E-08 60.7 7.4 43 126-182 827-869 (916)
371 1a7j_A Phosphoribulokinase; tr 96.9 0.00026 8.9E-09 58.0 1.3 37 66-102 5-44 (290)
372 1zu4_A FTSY; GTPase, signal re 96.9 0.001 3.5E-08 55.2 4.9 36 63-98 102-140 (320)
373 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00047 1.6E-08 60.1 2.9 31 60-90 132-162 (460)
374 2dpy_A FLII, flagellum-specifi 96.9 0.0011 3.9E-08 57.3 5.2 32 63-94 154-185 (438)
375 3iby_A Ferrous iron transport 96.8 0.0017 5.9E-08 52.0 5.9 22 68-89 3-24 (256)
376 2v3c_C SRP54, signal recogniti 96.8 0.0032 1.1E-07 54.4 7.9 34 66-99 99-135 (432)
377 2obl_A ESCN; ATPase, hydrolase 96.8 0.00096 3.3E-08 56.0 4.4 33 63-95 68-100 (347)
378 3i8s_A Ferrous iron transport 96.8 0.0089 3E-07 48.2 10.0 24 66-89 3-26 (274)
379 2orv_A Thymidine kinase; TP4A 96.8 0.012 4.2E-07 46.2 10.2 33 66-98 19-54 (234)
380 3hdt_A Putative kinase; struct 96.8 0.0012 4E-08 51.9 4.4 31 66-96 14-44 (223)
381 2f1r_A Molybdopterin-guanine d 96.8 0.0005 1.7E-08 51.7 2.1 25 68-92 4-28 (171)
382 2wsm_A Hydrogenase expression/ 96.7 0.0013 4.4E-08 51.0 4.4 44 34-90 11-54 (221)
383 2qtf_A Protein HFLX, GTP-bindi 96.7 0.003 1E-07 53.3 6.7 22 68-89 181-202 (364)
384 3a1s_A Iron(II) transport prot 96.7 0.0022 7.4E-08 51.5 5.6 22 67-88 6-27 (258)
385 2xxa_A Signal recognition part 96.7 0.0042 1.4E-07 53.7 7.7 73 65-137 99-195 (433)
386 3cr8_A Sulfate adenylyltranfer 96.7 0.00064 2.2E-08 60.6 2.5 38 64-101 367-408 (552)
387 1xjc_A MOBB protein homolog; s 96.7 0.0012 4.2E-08 49.4 3.8 24 67-90 5-28 (169)
388 3p32_A Probable GTPase RV1496/ 96.7 0.015 5E-07 48.8 10.8 26 65-90 78-103 (355)
389 2ocp_A DGK, deoxyguanosine kin 96.7 0.0011 3.7E-08 52.5 3.6 26 66-91 2-27 (241)
390 4edh_A DTMP kinase, thymidylat 96.7 0.0013 4.3E-08 51.3 3.8 27 65-91 5-31 (213)
391 2wjg_A FEOB, ferrous iron tran 96.7 0.0038 1.3E-07 46.8 6.4 23 67-89 8-30 (188)
392 2qag_B Septin-6, protein NEDD5 96.7 0.00095 3.3E-08 57.4 3.3 30 60-89 34-65 (427)
393 1oix_A RAS-related protein RAB 96.7 0.00096 3.3E-08 50.7 3.0 24 67-90 30-53 (191)
394 2f9l_A RAB11B, member RAS onco 96.7 0.001 3.6E-08 50.7 3.2 23 67-89 6-28 (199)
395 3bor_A Human initiation factor 96.6 0.017 5.7E-07 45.3 10.2 56 26-83 27-84 (237)
396 3tqf_A HPR(Ser) kinase; transf 96.6 0.0012 4.1E-08 49.6 3.2 25 65-89 15-39 (181)
397 2ged_A SR-beta, signal recogni 96.6 0.003 1E-07 47.6 5.6 26 65-90 47-72 (193)
398 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0013 4.3E-08 48.3 3.3 24 67-90 24-47 (149)
399 1m8p_A Sulfate adenylyltransfe 96.6 0.0017 5.9E-08 58.1 4.8 36 65-100 395-434 (573)
400 3dz8_A RAS-related protein RAB 96.6 0.014 4.9E-07 43.8 9.4 24 67-90 24-47 (191)
401 3v9p_A DTMP kinase, thymidylat 96.6 0.0012 4.3E-08 51.9 3.4 26 65-90 24-49 (227)
402 1pui_A ENGB, probable GTP-bind 96.6 0.00057 1.9E-08 52.5 1.3 29 61-89 21-49 (210)
403 3lv8_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 51.8 3.7 27 64-90 25-51 (236)
404 2vf7_A UVRA2, excinuclease ABC 96.6 0.0024 8.1E-08 59.6 5.5 44 126-183 752-795 (842)
405 1p5z_B DCK, deoxycytidine kina 96.6 0.00061 2.1E-08 54.7 1.4 28 64-91 22-49 (263)
406 2vp4_A Deoxynucleoside kinase; 96.6 0.00082 2.8E-08 52.9 2.1 33 64-97 18-50 (230)
407 1tq4_A IIGP1, interferon-induc 96.6 0.0014 4.9E-08 56.2 3.7 24 66-89 69-92 (413)
408 3tmk_A Thymidylate kinase; pho 96.6 0.0028 9.5E-08 49.5 5.1 30 65-94 4-33 (216)
409 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0038 1.3E-07 54.3 6.4 26 65-90 150-175 (473)
410 2xtp_A GTPase IMAP family memb 96.6 0.015 5.1E-07 46.2 9.6 24 66-89 22-45 (260)
411 3iev_A GTP-binding protein ERA 96.6 0.013 4.5E-07 48.1 9.4 24 66-89 10-33 (308)
412 2ygr_A Uvrabc system protein A 96.5 0.0074 2.5E-07 57.0 8.5 43 126-182 885-927 (993)
413 3b1v_A Ferrous iron uptake tra 96.5 0.0044 1.5E-07 50.1 6.2 23 67-89 4-26 (272)
414 4i1u_A Dephospho-COA kinase; s 96.5 0.0015 5.2E-08 50.7 3.3 31 68-99 11-41 (210)
415 1x3s_A RAS-related protein RAB 96.5 0.017 5.9E-07 43.2 9.2 23 67-89 16-38 (195)
416 2p67_A LAO/AO transport system 96.5 0.019 6.4E-07 47.9 10.1 28 63-90 53-80 (341)
417 3euj_A Chromosome partition pr 96.5 0.0017 5.8E-08 56.8 3.8 29 61-90 25-53 (483)
418 1g8f_A Sulfate adenylyltransfe 96.5 0.0028 9.6E-08 55.8 5.2 28 65-92 394-421 (511)
419 2hf9_A Probable hydrogenase ni 96.5 0.0037 1.3E-07 48.5 5.4 25 66-90 38-62 (226)
420 3def_A T7I23.11 protein; chlor 96.5 0.012 4.1E-07 47.0 8.6 26 65-90 35-60 (262)
421 4ag6_A VIRB4 ATPase, type IV s 96.5 0.0031 1.1E-07 53.6 5.3 26 65-90 34-59 (392)
422 3eiq_A Eukaryotic initiation f 96.5 0.01 3.5E-07 50.2 8.5 19 66-84 77-95 (414)
423 2r6f_A Excinuclease ABC subuni 96.5 0.0042 1.4E-07 58.4 6.4 43 126-182 867-909 (972)
424 2gk6_A Regulator of nonsense t 96.4 0.0032 1.1E-07 57.0 5.4 38 37-90 182-219 (624)
425 1nrj_B SR-beta, signal recogni 96.4 0.0022 7.6E-08 49.5 3.8 26 65-90 11-36 (218)
426 2dyk_A GTP-binding protein; GT 96.4 0.002 6.7E-08 46.9 3.4 22 68-89 3-24 (161)
427 2krk_A 26S protease regulatory 96.4 0.0021 7.3E-08 42.4 3.1 39 200-238 8-46 (86)
428 1z2a_A RAS-related protein RAB 96.4 0.0018 6.2E-08 47.4 3.1 23 67-89 6-28 (168)
429 2axn_A 6-phosphofructo-2-kinas 96.4 0.0035 1.2E-07 55.4 5.4 27 66-92 35-61 (520)
430 3ld9_A DTMP kinase, thymidylat 96.4 0.0025 8.6E-08 50.0 3.9 29 64-92 19-47 (223)
431 3vkw_A Replicase large subunit 96.4 0.004 1.4E-07 53.7 5.5 24 65-88 160-183 (446)
432 2wji_A Ferrous iron transport 96.4 0.0018 6.2E-08 47.8 3.0 22 67-88 4-25 (165)
433 3ly5_A ATP-dependent RNA helic 96.4 0.022 7.6E-07 45.5 9.6 19 66-84 91-109 (262)
434 2zej_A Dardarin, leucine-rich 96.4 0.0016 5.4E-08 49.0 2.5 21 68-88 4-24 (184)
435 4tmk_A Protein (thymidylate ki 96.4 0.0025 8.7E-08 49.6 3.7 25 66-90 3-27 (213)
436 1upt_A ARL1, ADP-ribosylation 96.4 0.0028 9.4E-08 46.6 3.8 25 65-89 6-30 (171)
437 1kao_A RAP2A; GTP-binding prot 96.4 0.0023 7.8E-08 46.7 3.3 24 67-90 4-27 (167)
438 2qu8_A Putative nucleolar GTP- 96.3 0.014 4.9E-07 45.3 8.0 24 66-89 29-52 (228)
439 1vec_A ATP-dependent RNA helic 96.3 0.021 7.1E-07 43.5 8.7 19 66-84 40-58 (206)
440 1hv8_A Putative ATP-dependent 96.3 0.016 5.6E-07 47.9 8.7 23 67-89 45-67 (367)
441 2lkc_A Translation initiation 96.3 0.0032 1.1E-07 46.7 3.8 25 64-88 6-30 (178)
442 2ce2_X GTPase HRAS; signaling 96.3 0.0024 8.4E-08 46.4 3.1 24 67-90 4-27 (166)
443 1ek0_A Protein (GTP-binding pr 96.3 0.0026 9E-08 46.6 3.3 24 67-90 4-27 (170)
444 1u8z_A RAS-related protein RAL 96.3 0.0026 9E-08 46.4 3.3 23 67-89 5-27 (168)
445 1z0j_A RAB-22, RAS-related pro 96.3 0.0027 9.4E-08 46.5 3.4 24 67-90 7-30 (170)
446 1bif_A 6-phosphofructo-2-kinas 96.3 0.0017 5.9E-08 56.7 2.5 27 66-92 39-65 (469)
447 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0028 9.6E-08 46.9 3.4 23 67-89 8-30 (177)
448 2nzj_A GTP-binding protein REM 96.3 0.0025 8.7E-08 47.0 3.1 23 67-89 5-27 (175)
449 3tbk_A RIG-I helicase domain; 96.3 0.06 2.1E-06 47.2 12.5 24 66-89 19-42 (555)
450 1ky3_A GTP-binding protein YPT 96.2 0.0029 1E-07 46.9 3.4 25 66-90 8-32 (182)
451 1z08_A RAS-related protein RAB 96.2 0.003 1E-07 46.4 3.4 23 67-89 7-29 (170)
452 1g16_A RAS-related protein SEC 96.2 0.0028 9.6E-08 46.4 3.1 23 67-89 4-26 (170)
453 2ffh_A Protein (FFH); SRP54, s 96.2 0.0092 3.1E-07 51.3 6.7 34 65-98 97-133 (425)
454 2v6i_A RNA helicase; membrane, 96.2 0.017 5.9E-07 49.7 8.5 22 66-87 2-24 (431)
455 1c1y_A RAS-related protein RAP 96.2 0.0031 1.1E-07 46.1 3.3 23 67-89 4-26 (167)
456 2rcn_A Probable GTPase ENGC; Y 96.2 0.0029 1E-07 53.2 3.5 27 65-91 214-240 (358)
457 2atv_A RERG, RAS-like estrogen 96.2 0.0035 1.2E-07 47.5 3.7 25 65-89 27-51 (196)
458 3iuy_A Probable ATP-dependent 96.2 0.022 7.5E-07 44.2 8.4 20 65-84 56-75 (228)
459 2f7s_A C25KG, RAS-related prot 96.2 0.038 1.3E-06 42.3 9.6 23 67-89 26-48 (217)
460 1r8s_A ADP-ribosylation factor 96.2 0.0035 1.2E-07 45.7 3.5 23 68-90 2-24 (164)
461 1nij_A Hypothetical protein YJ 96.2 0.0059 2E-07 50.4 5.2 24 67-90 5-28 (318)
462 1r2q_A RAS-related protein RAB 96.2 0.0034 1.2E-07 46.0 3.3 23 67-89 7-29 (170)
463 4dcu_A GTP-binding protein ENG 96.2 0.011 3.9E-07 51.2 7.2 22 67-88 24-45 (456)
464 3e2i_A Thymidine kinase; Zn-bi 96.1 0.049 1.7E-06 42.3 9.9 22 66-87 28-50 (219)
465 2erx_A GTP-binding protein DI- 96.1 0.003 1E-07 46.3 3.0 22 67-88 4-25 (172)
466 2www_A Methylmalonic aciduria 96.1 0.0039 1.3E-07 52.3 3.9 25 66-90 74-98 (349)
467 3o8b_A HCV NS3 protease/helica 96.1 0.093 3.2E-06 47.7 13.1 33 64-96 230-262 (666)
468 3qks_A DNA double-strand break 96.1 0.0039 1.3E-07 48.1 3.6 27 66-92 23-49 (203)
469 3q85_A GTP-binding protein REM 96.1 0.0033 1.1E-07 46.1 3.2 20 68-87 4-23 (169)
470 2wjy_A Regulator of nonsense t 96.1 0.0058 2E-07 56.9 5.4 38 37-90 358-395 (800)
471 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0029 9.8E-08 53.4 3.0 23 68-90 25-47 (365)
472 3bc1_A RAS-related protein RAB 96.1 0.0036 1.2E-07 46.9 3.3 23 67-89 12-34 (195)
473 1svi_A GTP-binding protein YSX 96.1 0.0043 1.5E-07 46.7 3.8 25 65-89 22-46 (195)
474 3clv_A RAB5 protein, putative; 96.1 0.0042 1.4E-07 46.9 3.7 24 66-89 7-30 (208)
475 1qhl_A Protein (cell division 96.1 0.0014 4.8E-08 51.6 1.0 24 68-91 29-52 (227)
476 2yv5_A YJEQ protein; hydrolase 96.1 0.0036 1.2E-07 51.4 3.5 26 65-91 164-189 (302)
477 2fn4_A P23, RAS-related protei 96.1 0.0036 1.2E-07 46.4 3.2 24 66-89 9-32 (181)
478 1fzq_A ADP-ribosylation factor 96.1 0.0048 1.6E-07 46.2 3.9 25 65-89 15-39 (181)
479 1z0f_A RAB14, member RAS oncog 96.1 0.0039 1.3E-07 46.1 3.3 24 67-90 16-39 (179)
480 2b6h_A ADP-ribosylation factor 96.1 0.0043 1.5E-07 47.0 3.6 25 64-88 27-51 (192)
481 3q72_A GTP-binding protein RAD 96.1 0.0038 1.3E-07 45.7 3.2 22 67-88 3-24 (166)
482 2oil_A CATX-8, RAS-related pro 96.0 0.004 1.4E-07 47.0 3.3 23 67-89 26-48 (193)
483 1m2o_B GTP-binding protein SAR 96.0 0.0038 1.3E-07 47.2 3.2 23 66-88 23-45 (190)
484 2hxs_A RAB-26, RAS-related pro 96.0 0.0037 1.3E-07 46.2 3.1 24 66-89 6-29 (178)
485 2y8e_A RAB-protein 6, GH09086P 96.0 0.0038 1.3E-07 46.1 3.1 23 67-89 15-37 (179)
486 3fe2_A Probable ATP-dependent 96.0 0.019 6.3E-07 45.2 7.3 19 66-84 66-84 (242)
487 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0042 1.4E-07 46.4 3.4 24 67-90 5-28 (189)
488 3con_A GTPase NRAS; structural 96.0 0.0041 1.4E-07 46.7 3.3 24 67-90 22-45 (190)
489 2efe_B Small GTP-binding prote 96.0 0.0043 1.5E-07 46.0 3.4 23 67-89 13-35 (181)
490 1wf3_A GTP-binding protein; GT 96.0 0.0097 3.3E-07 48.8 5.7 23 67-89 8-30 (301)
491 1u0l_A Probable GTPase ENGC; p 96.0 0.0031 1.1E-07 51.7 2.7 27 66-92 169-195 (301)
492 1mh1_A RAC1; GTP-binding, GTPa 96.0 0.0038 1.3E-07 46.5 3.0 23 67-89 6-28 (186)
493 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0041 1.4E-07 46.6 3.1 24 66-89 7-30 (184)
494 3h1t_A Type I site-specific re 96.0 0.015 5.2E-07 52.0 7.4 25 66-90 198-222 (590)
495 2a9k_A RAS-related protein RAL 96.0 0.0044 1.5E-07 46.1 3.3 23 67-89 19-41 (187)
496 2bme_A RAB4A, RAS-related prot 96.0 0.0041 1.4E-07 46.4 3.1 23 67-89 11-33 (186)
497 2g6b_A RAS-related protein RAB 96.0 0.0045 1.6E-07 45.9 3.3 25 66-90 10-34 (180)
498 3pey_A ATP-dependent RNA helic 96.0 0.093 3.2E-06 43.7 11.9 21 66-86 44-64 (395)
499 3bwd_D RAC-like GTP-binding pr 96.0 0.0054 1.8E-07 45.6 3.7 24 66-89 8-31 (182)
500 3kkq_A RAS-related protein M-R 96.0 0.0046 1.6E-07 46.1 3.3 25 66-90 18-42 (183)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-46 Score=317.60 Aligned_cols=237 Identities=50% Similarity=0.865 Sum_probs=225.7
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
.+..++.-||+..+|...++...+.|..+|+||.|+++++++|++.+..|+.+|++|.++|+.+++++||+||||||||+
T Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTl 197 (405)
T 4b4t_J 118 DSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197 (405)
T ss_dssp TTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHH
T ss_pred ccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+++++|++++.+|+.++++.+.+.+.|+.+..++.+|..++.+.|+||||||+|.+++.+.....+.+......+..++.
T Consensus 198 lAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 277 (405)
T 4b4t_J 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277 (405)
T ss_dssp HHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877666677788889999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++....+++.||+|||.++.+|++++||+||+..|+++.|+.++|.+||+.+++......++|++.|+..+++++
T Consensus 278 ~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 278 QLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp HHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCC
T ss_pred hhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCC
Confidence 99998888899999999999999999999999999999999999999999999999999888999999999988764
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-44 Score=312.40 Aligned_cols=237 Identities=52% Similarity=0.945 Sum_probs=225.8
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
.++.|+.-||++.||.++.|--.+.|.++|+||.|+++++++|++.+..|+..++.|.++|+.+++++||+||||||||+
T Consensus 179 ~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTl 258 (467)
T 4b4t_H 179 SKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTL 258 (467)
T ss_dssp TSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHH
T ss_pred CcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHH
Confidence 56789999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+++++|++++.+|+.++++.+.+.+.|..+..++.+|..+....|+||||||+|.++..+.....+........+..++.
T Consensus 259 LAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 338 (467)
T 4b4t_H 259 CARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT 338 (467)
T ss_dssp HHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH
T ss_pred HHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877767777788889999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++++....+++.||+|||.++.+|++++|++||+..|+++.|+.++|.+||+.+++......+++++.|+..++++.
T Consensus 339 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 339 QLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNST 415 (467)
T ss_dssp HHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCC
T ss_pred HhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCC
Confidence 99988888899999999999999999999999999999999999999999999999999888999999999988754
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=312.78 Aligned_cols=237 Identities=73% Similarity=1.193 Sum_probs=224.6
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
.+..++.-||++.+|....+...+.|.++|+||+|++++++.|.+.+..|+.+|++|.++|+.+++++|||||||||||+
T Consensus 151 ~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTl 230 (437)
T 4b4t_L 151 TTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTL 230 (437)
T ss_dssp SSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHH
T ss_pred cchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+++++|++++.+|+.++++.+.+.+.+.....++.+|..+..+.|+||||||+|.++.++.......+......+..++.
T Consensus 231 lAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 231 LAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310 (437)
T ss_dssp HHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877666667778888999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++....+++.||+|||.++.+|+++++++||+..|+++.|+.++|.+||+.+++......++|++.|+..+++++
T Consensus 311 ~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 311 QMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp HHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCC
T ss_pred HhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCC
Confidence 99988888899999999999999999999999999999999999999999999999998888999999999988654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-44 Score=309.04 Aligned_cols=237 Identities=49% Similarity=0.861 Sum_probs=224.0
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
.+..++.-||...||..+.|.-.+.|.++|+||.|++++++.|.+.+..|+.+++.|.++|+.++.++|||||||||||+
T Consensus 152 ~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 152 KTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 231 (437)
T ss_dssp TTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHH
T ss_pred cCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHH
Confidence 45678889999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+++++|++++.+|+.++++.+.+.+.++.+..++.+|..+....|+||||||+|.++..+.......+......+..+++
T Consensus 232 LAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 232 LAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp HHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877666667778888999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++....+++.||+|||.++.+|++++||+||+..|+++.|+.++|.+||+.+++......++|++.|+..+++++
T Consensus 312 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 312 QLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLS 388 (437)
T ss_dssp HHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCC
T ss_pred HhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCC
Confidence 99888888899999999999999999999999999999999999999999999999999888999999999988654
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=312.43 Aligned_cols=237 Identities=50% Similarity=0.850 Sum_probs=224.1
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
++..++..||++.+|..+.|...+.|+.+|+||+|+++++++|.+.+..|+.+|+.|.++|+.+++++|||||||||||+
T Consensus 151 ~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTl 230 (434)
T 4b4t_M 151 DSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTL 230 (434)
T ss_dssp SSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHH
T ss_pred cchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+++++|++++.+|+.++++.+.+.+.|.....++.+|..+....|+||||||+|.+++++.......+......+..+++
T Consensus 231 lAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 231 LARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp HHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876666666778888999999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++....+++.||+|||.++.+|+++++++||+..|+++.|+.++|.+||+.+++......+++++.|+..+++++
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFN 387 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCC
T ss_pred HhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCC
Confidence 99998888899999999999999999999999999999999999999999999999998888999999999988654
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-43 Score=303.86 Aligned_cols=237 Identities=46% Similarity=0.822 Sum_probs=222.7
Q ss_pred chhhhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHH
Q 026258 2 TTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTt 81 (241)
.+..++..||...+|.++.+...+.|..+|+|++|++++++.|.+.+..|+.+++.|.++|+.+++++||+||||||||+
T Consensus 142 ~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~ 221 (428)
T 4b4t_K 142 HSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTM 221 (428)
T ss_dssp SSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHH
T ss_pred chhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHH
Confidence 45678888999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHH
Q 026258 82 LARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLN 161 (241)
Q Consensus 82 l~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~ 161 (241)
+++++|++++.+++.++++.+.+.+.|.....++.+|..+....|+|||+||+|.++..+.......+....+.+..++.
T Consensus 222 lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~ 301 (428)
T 4b4t_K 222 LVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT 301 (428)
T ss_dssp HHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877666666677788888999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcC-CCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 162 QLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIP-LPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~-~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++.....++.||+|||.++.+|++++||+||+..|++| +|+.++|..||+.+++......++|++.|+..+++++
T Consensus 302 ~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 302 QMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLS 379 (428)
T ss_dssp HHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCC
T ss_pred HhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCC
Confidence 9888877789999999999999999999999999999996 8999999999999999998888999999999988764
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-37 Score=285.75 Aligned_cols=233 Identities=39% Similarity=0.680 Sum_probs=178.3
Q ss_pred hhhhhCCCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHH
Q 026258 5 TIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~ 84 (241)
+++.++.....+.. .....+.|+.+|+++.|++++++.|.+.+.+|+..++.|.++|+.++.++||+||||||||++++
T Consensus 451 Df~~Al~~~~ps~~-r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 451 DFRWALSQSNPSAL-RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp HHHHHHSSSSCCCC-CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHH
T ss_pred HHHHHHHhCCCccc-ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHH
Confidence 34444444333222 22335678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 85 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 85 ~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
++|++++.+++.++.+.+.+.+.|+.+..++.+|..++...|+||||||+|.++..+............+.+.+++.+++
T Consensus 530 aiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~md 609 (806)
T 3cf2_A 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 609 (806)
T ss_dssp HHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHH
T ss_pred HHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988754433334445567788888888
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 165 GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+.....++.||+|||.|+.+|++++|++||+..++++.|+.++|.+||+.+++..+...++|++.|+..+++++
T Consensus 610 g~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~S 683 (806)
T 3cf2_A 610 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp SSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------------
T ss_pred CCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCC
Confidence 88877899999999999999999999999999999999999999999999999998888999999999998764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.3e-36 Score=275.14 Aligned_cols=212 Identities=42% Similarity=0.735 Sum_probs=191.7
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
...+..+|+||.|+++++++|++.+..|+..|++|.++|+.++.++||+||||||||++++++|++++.+++.++++.+.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+.+.+..+..++.+|..+..+.|+||||||+|.++.++.+.......... .+++..+++....+++.||++||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv---~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV---SQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHH---HHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHH---HHHHHHHhcccccCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999887665544444444 444444544455568999999999999
Q ss_pred CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++++++++||+..|+++.|+.++|.+||+.+++......+++++.|+..++++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999889999999999888664
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2e-32 Score=226.27 Aligned_cols=215 Identities=54% Similarity=0.968 Sum_probs=197.1
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
...|+.+|++++|++++++++.+++..++..++.+..+++..+.+++|+||||||||++++++++.++.+++.+++..+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..+.+.....+...|..+....|++|+|||+|.+...........+...+..+..+++.++.....+++.+|+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999998877665566677888999999998877766678999999999999
Q ss_pred CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++++++++||...+.++.|+.++|.+|++.+++......+++.+.++..++++.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCV 223 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCC
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999888777888999998887653
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.7e-33 Score=232.69 Aligned_cols=211 Identities=42% Similarity=0.745 Sum_probs=180.2
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
.+.|+.+|++++|++++++.|.+.+..++..++.|.++++.++.+++|+||||||||++++++|+.++.+++.+++..+.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCC---CCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG---TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~---~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
+.+.+.....++.+|..+....|++|+|||+|.+........ .......+.. ++..+++.....+++||++||.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~---lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ---ILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHH---HHHHHHSSCTTSSEEEEEEESC
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHH---HHHHhhcccCCCCEEEEEecCC
Confidence 777777777788999999999999999999999975543221 1222333334 4444444444568999999999
Q ss_pred CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
++.+++++++++||...+.++.|+.++|.+|++.+++......+++++.++..++.+
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~ 220 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 220 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSC
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCC
Confidence 999999999999999999999999999999999999988777788999998877654
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3e-31 Score=232.20 Aligned_cols=217 Identities=41% Similarity=0.726 Sum_probs=182.2
Q ss_pred ccccC-CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 21 MLHED-PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 21 ~~~~~-~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
++... .+..+|++++|.+++++++.+.+.. +.++..+.+++...+.+++|+||||||||+++++++++++.+++.+++
T Consensus 4 ~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp -CCCCCSCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred eeccCCCCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 34444 6788999999999999999998865 677888999998889999999999999999999999999999999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
..+...+.+.....++.+|..+....|+||||||+|.+..++.....+.+......+..++..+++.....+++||++||
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 99998888888888999999999999999999999999876543333334444556667776666544455899999999
Q ss_pred CCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 180 ~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.++.+++++++++||+..+.++.|+.++|.+|++.+++......+++++.++..+.++.
T Consensus 163 ~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 163 RPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred ChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999988878888988888776654
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.98 E-value=2.8e-31 Score=216.40 Aligned_cols=214 Identities=41% Similarity=0.696 Sum_probs=177.1
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
+....++.+|++++|.+++++++.+.+.. +..+..+..++...+.+++|+||||||||++++++++.++.+++.+++..
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 45677889999999999999999988754 66667777778788889999999999999999999999999999999998
Q ss_pred hcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
+...+.+.....++.+|..+....|+++++||+|.+..................+..++..++......++.+|++||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 88777777777888999999888899999999999987654433333344445666777777766666689999999999
Q ss_pred CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 182 ~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
+.+++++.+++||...+.++.|+.++|.+|++.+++......+++...++..+.+
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G 215 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPG 215 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTT
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCC
Confidence 9999999999999999999999999999999999988877777788877776665
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.98 E-value=2e-31 Score=224.18 Aligned_cols=212 Identities=36% Similarity=0.639 Sum_probs=173.0
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
..+..+.|+.+|++++|++++++.|.+++..++..+..+.. +..++.++||+||||||||++++++|++++.+++.+++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 34456789999999999999999999999998888888766 44667899999999999999999999999999999999
Q ss_pred hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
..+.+.+.+.....++.+|..+....|+||+|||+|.+...............+..+...++... ....++.||++||
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~v~vi~atn 162 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--NDSQGVLVLGATN 162 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--TSCCCEEEEEEES
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--ccCCceEEEEecC
Confidence 99999999999999999999999999999999999999876644444444445555555554432 2345799999999
Q ss_pred CCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhh
Q 026258 180 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEV 236 (241)
Q Consensus 180 ~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~ 236 (241)
.++.+++++++ ||...+.++.|+.++|.+|++.+++..... .+.+++.|+..+++
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g 218 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG 218 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTT
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Confidence 99999999999 999999999999999999999999876542 23345555555554
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=5.2e-31 Score=216.72 Aligned_cols=207 Identities=40% Similarity=0.706 Sum_probs=168.0
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~ 104 (241)
..|..+|+++.|++++++.|.+.+..++.++..+..+++..+.+++|+||||||||||++++|+.++..++.++...+.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
.+.+.....+..+|..+....|+++++||+|.++..+..... ....+.+.+++..+++......+.++++||.++.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 777788888999999988888999999999998754422111 11223456667777766666688899999999999
Q ss_pred ChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC---ccCCCCCCHHHHHHHh
Q 026258 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG---IAKHGEIDYEAVVKLA 234 (241)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~---~~~~~~~~~~~l~~~~ 234 (241)
|+++++++||+..+.++.|+.++|.+||+.+++. .....+++++.|+..+
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~ 212 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDL 212 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCS
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhh
Confidence 9999999999999999999999999999999864 3455688899888754
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.7e-31 Score=220.93 Aligned_cols=208 Identities=36% Similarity=0.649 Sum_probs=173.1
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCceEEEechhh
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVVSSAI 102 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-~~~~~~v~~~~~ 102 (241)
.+.|+.+|++++|++++++.|.+.+..|+..++.|.. +..++.++||+||||||||++++++|+++ +.+++.++++.+
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3567899999999999999999999999988888764 24667899999999999999999999999 889999999999
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCC
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKMIMATNRP 181 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~vI~tt~~~ 181 (241)
.+.+.+.....++.+|..+....|+||||||+|.+...+...... .....+..++..+++.. ...++.||++||.+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE---AARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTT---HHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccch---HHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 988888889999999999999999999999999998776543322 23344555666665543 34689999999999
Q ss_pred CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhhc
Q 026258 182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEVS 237 (241)
Q Consensus 182 ~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~~ 237 (241)
+.+++++++ ||...+.++.|+.++|.+|++.+++..... .+.+++.|+..++++
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~ 214 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGY 214 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTC
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence 999999999 999999999999999999999999876543 334555666655544
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.97 E-value=4.6e-30 Score=226.18 Aligned_cols=208 Identities=41% Similarity=0.742 Sum_probs=185.0
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccc
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~ 106 (241)
+..+|++++|++++++++.+.+..++..+..|..++...+.++||+||||||||++++++++.++.+++.++|..+.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh
Q 026258 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186 (241)
Q Consensus 107 ~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~ 186 (241)
.+.....++..|..+....|++|||||+|.+..+............+..+..+++.. ....++++|++||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~---~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL---KQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS---CTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc---ccCCceEEEEecCCccccCH
Confidence 999999999999999999999999999999987765444444455566666666544 44558999999999999999
Q ss_pred hccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 187 ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 187 ~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
++++++||...+.++.|+.++|.+|++.+++......+++++.++..+..+
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~ 406 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTC
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCC
Confidence 999999999999999999999999999999998888888888888877654
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=1.2e-30 Score=222.06 Aligned_cols=219 Identities=35% Similarity=0.620 Sum_probs=163.8
Q ss_pred CChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
....+...+....++.+|++++|++++++.|.+++..++..+..|.. +..++.++||+||||||||++++++|++++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 33 LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp --------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34444555656788999999999999999999999998888888876 44677899999999999999999999999999
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
++.+++..+.+.+.+.....++.+|..+....|+||||||+|.+...+..............+...++.+. ....++.
T Consensus 112 ~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--~~~~~v~ 189 (355)
T 2qp9_X 112 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--NDSQGVL 189 (355)
T ss_dssp EEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----CCEE
T ss_pred EEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--ccCCCeE
Confidence 99999999988888888888999999999999999999999999866543333333344444444444332 1235799
Q ss_pred EEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhhc
Q 026258 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEVS 237 (241)
Q Consensus 174 vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~~ 237 (241)
||++||.++.+++++++ ||...+.++.|+.++|.+|++.+++..... .+.+++.|+..++++
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGY 252 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTC
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCC
Confidence 99999999999999999 999999999999999999999999876542 344566777766653
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=207.08 Aligned_cols=209 Identities=39% Similarity=0.649 Sum_probs=157.7
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccc
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~ 106 (241)
|+.+|++++|++++++.+.+.+.. +..+..+..+|+..+.+++|+||||||||+++++++++++.+++.+++..+...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467999999999999999998765 6667777788888899999999999999999999999999999999999998888
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCC-CccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 107 ~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
.+.....+..+|..+....|++|+|||+|.+......... ..+...+..+..++..++......++.+|++||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 8888888889999998888999999999999765432211 112334566777777777655566899999999999999
Q ss_pred hhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCC--HHHHHHHhhh
Q 026258 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID--YEAVVKLAEV 236 (241)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~--~~~l~~~~~~ 236 (241)
+++.+++||...+.++.|+.++|.+|++.+++........+ ...++..+.+
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g 212 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPG 212 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTT
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCC
Confidence 99999999999999999999999999999987765433222 2344444443
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=2.8e-28 Score=198.35 Aligned_cols=214 Identities=41% Similarity=0.715 Sum_probs=175.4
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
...|+.+|++++|.++++.++.+.... +..+..+..+++..+.+++|+|||||||||+++++++.++..++.+++..+.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 467889999999999999999987765 4667788888888888899999999999999999999999999999988877
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....+.....+..+|..+....|+++++||+|.+..................+..++..+++......+.+++++|.++.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 66666667778888888877778999999999987654322122234455667777777776666667888899999999
Q ss_pred CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+++++++++||+..+.++.|+.++|.+|++.+.+......++++..++..+.++.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 9999999999999999999999999999999998887777888888888777653
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=3.7e-29 Score=220.19 Aligned_cols=211 Identities=42% Similarity=0.721 Sum_probs=181.0
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccc
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 106 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~ 106 (241)
+..+|++++|+++++..+.+.+.. +.++..+.+++...+.+++|+||||||||+|++++++.++.+++.+++..+...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 889999999999999999998765 5677788888888888999999999999999999999999999999999988877
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCh
Q 026258 107 IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDP 186 (241)
Q Consensus 107 ~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~ 186 (241)
.+.....++.+|..+....|++++|||+|.+.............+....+..++..+++......+.++++||.++.+++
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 77777778888888777778999999999997665432223345556778888888887666667899999999999999
Q ss_pred hccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 187 ALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 187 ~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++++++||+..+.++.|+.++|.+|++.+++......++++..|+..+.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCC
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999998887777888888887776553
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.6e-29 Score=221.09 Aligned_cols=215 Identities=35% Similarity=0.639 Sum_probs=165.7
Q ss_pred hhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCceE
Q 026258 17 VVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-DANFL 95 (241)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-~~~~~ 95 (241)
.+...+....|+.+|++++|++++++.|.+.+..++..+..|... ..++.++||+||||||||++++++|+++ +.+++
T Consensus 119 ~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 119 QLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp -----CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred HhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 344555567899999999999999999999998888777776542 3567899999999999999999999999 88999
Q ss_pred EEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-CCCCeEE
Q 026258 96 KVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKM 174 (241)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~v 174 (241)
.++++.+.+.+.+.....++.+|..+....|+||||||+|.+++.+......... .....++..+++.. ...++.|
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR---RIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGH---HHHHHHHTTTTCSSCCCSSCEE
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHH---HHHHHHHHHHhCcccCCCCEEE
Confidence 9999998888777777778899999999999999999999998766544333333 34455565565543 3458999
Q ss_pred EEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC-CCCCHHHHHHHhhhc
Q 026258 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEVS 237 (241)
Q Consensus 175 I~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~~~ 237 (241)
|++||.++.+++++++ ||...+.++.|+.++|.+|++.++...... .+.+++.|+..++++
T Consensus 275 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~ 336 (444)
T 2zan_A 275 LGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGY 336 (444)
T ss_dssp EEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTC
T ss_pred EecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence 9999999999999999 999999999999999999999999876542 345667777777664
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=210.56 Aligned_cols=216 Identities=31% Similarity=0.599 Sum_probs=161.8
Q ss_pred CChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 14 VDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
........+....++.+|++++|++++++.+.+++..+...+..+..++ .++.++||+||||||||++++++|+.++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 3334444555677889999999999999999999988877777776666 456899999999999999999999999999
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
++.+++..+...+.+.....++.+|..+....|++|||||+|.++..............+..+...++.... ....+++
T Consensus 176 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~ 254 (389)
T 3vfd_A 176 FFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVL 254 (389)
T ss_dssp EEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEE
T ss_pred EEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-cCCCCEE
Confidence 999999999888888888888999999999999999999999998765443334445555555555554432 1234799
Q ss_pred EEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 174 vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
||++||.++.+++++++ ||...+.++.|+.++|.+|++.++..... .++.+.+..+++
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~ 312 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLAR 312 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Confidence 99999999999999999 99889999999999999999998877543 344444444443
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=4.2e-28 Score=201.53 Aligned_cols=209 Identities=36% Similarity=0.643 Sum_probs=164.6
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
+..+.++.+|++++|++++++.+.+.+..+...++.+..++ .++.+++|+||||||||++++++++.++.+++.+++..
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 33567889999999999999999999988877777776655 45789999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 102 IIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 102 ~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
+...+.+.....++.+|..+....|++|+|||+|.+...............+..+...++.........++.+|++||.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 98888888888889999999999999999999999987654433333444455555555544322223479999999999
Q ss_pred CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 182 ~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
+.+++++++ ||...+.++.|+.++|..|++.+++.... .++.+.+..+++
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~la~ 219 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGS--PLDTEALRRLAK 219 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSC--CSCHHHHHHHHH
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Confidence 999999999 99999999999999999999998876543 334444444433
No 24
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=4.7e-27 Score=193.60 Aligned_cols=213 Identities=41% Similarity=0.719 Sum_probs=174.7
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~ 104 (241)
..++.+|++++|.+++++++.+.... +..+..+..+++..+.+++|+|||||||||+++++++.++..++.+++..+..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 44889999999999999999987765 46677788888888888999999999999999999999999999999888776
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
...+.....+..+|..+....|+++++||+|.+..................+..++..+.+......+.+++++|.++.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 66666677778889888877889999999999875543211122345566777888888766655568888999999999
Q ss_pred ChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
++++++++||+..+.++.|+.++|.+|++.+++......++++..++..+.++.
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 999999999999999999999999999999998877777888888887776654
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.1e-28 Score=204.91 Aligned_cols=195 Identities=34% Similarity=0.624 Sum_probs=158.8
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
.+....++.+|++++|++++++.|.+.+..++..++.+...+ ..+.+++|+||||||||++++++|+.++.+++.+++.
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 344567889999999999999999999998877777766554 5678999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC--CCCCeEEEEEe
Q 026258 101 AIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD--QLGKVKMIMAT 178 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~~~vI~tt 178 (241)
.+...+.+.....++.+|..+....|++|||||+|.+............. ..+..++..+++.. ...++.+|++|
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~lL~~l~~~~~~~~~~v~vI~at 228 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR---RIKTEFLVQLDGATTSSEDRILVVGAT 228 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHH---HHHHHHHHHHHC----CCCCEEEEEEE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHH---HHHHHHHHHHhcccccCCCCEEEEEec
Confidence 99988888888889999999998999999999999997655332222223 33334444444322 23479999999
Q ss_pred CCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccC
Q 026258 179 NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK 221 (241)
Q Consensus 179 ~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~ 221 (241)
|.++.+++++++ ||...+.++.|+.++|.++++.+++....
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~ 269 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQC 269 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCB
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCC
Confidence 999999999999 99989999999999999999998876543
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=7.4e-30 Score=209.13 Aligned_cols=212 Identities=41% Similarity=0.733 Sum_probs=162.3
Q ss_pred ccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhh
Q 026258 23 HEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (241)
Q Consensus 23 ~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~ 102 (241)
..+.++.+|++++|++++++.+.+.+.. +..++.+..++...+.+++|+||||||||++++++++.++.+++.+++..+
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 3467788999999999999999998764 677888889998888999999999999999999999999999999999888
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCC-CCccHHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCC
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQLDGFDQ-LGKVKMIMATNR 180 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vI~tt~~ 180 (241)
...+.+.....++.+|..+....|++|+|||+|.+........ ...+......+..++..++.... ..++.+|+|||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 160 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR 160 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSC
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCC
Confidence 7666555444556678888888899999999999976432110 00011111223344444443322 235899999999
Q ss_pred CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 181 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 181 ~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
++.+++++.+++||...+.++.|+.++|.++++.+++......+++++.|+..++
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~ 215 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTA 215 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSC
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcC
Confidence 9999999999999999999999999999999999998876655666655555444
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=4.6e-30 Score=238.59 Aligned_cols=214 Identities=41% Similarity=0.740 Sum_probs=181.6
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
...+..+|++++|++++++.+.+++..++..+..+.++++.++.+++|+||||||||++++++|+.++.+++.+++..+.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+.+.+.....++.+|..+....|++|||||+|.++..+............+.+..++..+++.....++.||+|||.++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999888999999999999999999999999998776544333344556677788888877766678999999999999
Q ss_pred CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 184 LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 184 l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
+++++++++||...++++.|+.++|.+||+.+++......+++++.|+..++.+
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~ 682 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 682 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSS
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhcccc
Confidence 999999999999999999999999999999999887777777777666666543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=2.2e-26 Score=214.00 Aligned_cols=209 Identities=42% Similarity=0.745 Sum_probs=180.8
Q ss_pred CCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc
Q 026258 25 DPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID 104 (241)
Q Consensus 25 ~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~ 104 (241)
..+..+|++|+|+++++++|.+.+..++..+.+|.++++.++.+++|+|||||||||+++++++.++.+++.+++..+.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
.+.+.....+..+|..+....|+++|+||+|.++................ .++..+.+......+.+|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~---~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS---QLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHH---HHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHH---HHHHHhhhhcccccEEEecccCCchhc
Confidence 88899999999999999988999999999999987654333333333334 444444454555689999999999999
Q ss_pred ChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 185 DPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 185 ~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
++.+++++||...+.++.|+.++|.+|++.++.......+.++..++..+..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g 405 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSS
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcC
Confidence 9999998999999999999999999999999998888777777777765544
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=9.3e-25 Score=181.20 Aligned_cols=171 Identities=23% Similarity=0.355 Sum_probs=125.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHH----HhCCCeEEEEcCcccc
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYA----RDHQPCIIFMDEIDAI 137 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~vl~lDe~d~l 137 (241)
+...+.+++|+||||||||++++++|+.++.+++.++++.+.+.+.+.....++..|..+ +...|+||+|||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 456778999999999999999999999999999999999999999999988899999888 4678999999999999
Q ss_pred cCCCCCC--CCCccHHHHHHHHHHHHHhc--------CCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHH
Q 026258 138 GGRRFSE--GTSADREIQRTLMELLNQLD--------GFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQS 207 (241)
Q Consensus 138 ~~~~~~~--~~~~~~~~~~~l~~ll~~~~--------~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~ 207 (241)
++..... ........+..+.++++... ......++.+|+|||.++.+++++++++||...+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 8743221 11123345566666665221 11234579999999999999999998889987776 469999
Q ss_pred HHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 208 RMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 208 r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
|.+|++.++.. .+++.+.++.+++.+.
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~ 216 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFP 216 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSC
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCC
Confidence 99999988763 3567888888777654
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=2.2e-21 Score=161.70 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=144.0
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCC---CCceEEEEcCCCChHHHHHHHHHHHh-------CCceEEEechhh
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIK---PPKGVLLYGPPGTGKTLLARAIASNI-------DANFLKVVSSAI 102 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~vll~G~~GsGKTtl~~~la~~l-------~~~~~~v~~~~~ 102 (241)
+++|++++++.+.+.+..+.. +..+.+.|+. .+.+++|+||||||||++++++++.+ ..+++.+++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999999876432 4444455543 34579999999999999999999988 348999999999
Q ss_pred cccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 103 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 103 ~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...+.+.....+...|..+ .+++|+|||+|.++..... .......+..+..+++.. ..++.+|++++...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~-----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN-----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC-----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC-----CCCEEEEEeCChHH
Confidence 8888888777777777665 4579999999999754321 223455666777777643 24788999987643
Q ss_pred -----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 183 -----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 183 -----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
.+++++++ ||...+.|++|+.+++.+|++.+++.... .++.+.+..+.++
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~--~~~~~~~~~l~~~ 235 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNY--QMTPEAETALRAY 235 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Confidence 35688988 99999999999999999999999876543 4566666666654
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=7.8e-21 Score=160.36 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=137.3
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
...+.....+.+|++++|.++.++.+..++.... ..-....+++|+||||||||++++++++.++.+++.++
T Consensus 16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~--------~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAAAK--------KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHHHH--------HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHH--------hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 3445566777899999999999999999986431 11134568999999999999999999999999999999
Q ss_pred chhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------------
Q 026258 99 SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------------ 166 (241)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------ 166 (241)
+..+.. ...+...+. ....+++|+|||++.+ ....+..+...++.....
T Consensus 88 ~~~~~~------~~~~~~~~~--~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 148 (338)
T 3pfi_A 88 APMIEK------SGDLAAILT--NLSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTI 148 (338)
T ss_dssp GGGCCS------HHHHHHHHH--TCCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCC
T ss_pred chhccc------hhHHHHHHH--hccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccce
Confidence 876531 112222222 1356789999999999 567777787777654210
Q ss_pred -CCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhh
Q 026258 167 -DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE 235 (241)
Q Consensus 167 -~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~ 235 (241)
...+++++|++||....+++++++ ||+..+.+++|+.+++.++++.++..... .++.+.+..+++
T Consensus 149 ~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~ 214 (338)
T 3pfi_A 149 KIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAK 214 (338)
T ss_dssp CCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHH
T ss_pred ecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Confidence 011258999999998889999999 99889999999999999999988876543 456666666666
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.84 E-value=5.9e-22 Score=173.85 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=126.6
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CceEEEechhhc
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID--ANFLKVVSSAII 103 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~--~~~~~v~~~~~~ 103 (241)
.+...|++++|++++++.+..++... ..+..++.++||+||||||||++++++|+.++ .+++.++++.+.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 45667899999999999998887543 44556678999999999999999999999998 899999999999
Q ss_pred ccccchHHHHHHHHHHHH---HhCCCeEEEEcCcccccCCCCCCCCCccHHHHH----------------HHHHHHHHhc
Q 026258 104 DKYIGESARLIREMFGYA---RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQR----------------TLMELLNQLD 164 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~---~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~----------------~l~~ll~~~~ 164 (241)
+.+.+.... +...|..+ ....|++||+||+|.++..+.....+....... ....+++.+.
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999888887 88999988 677899999999999997764432111110000 0011233322
Q ss_pred --CCCCCCCeEEEEEeCCCCCCChhccCCCCcce--EEEcCCCCH--HHHHHHH
Q 026258 165 --GFDQLGKVKMIMATNRPDVLDPALLRPGRLDR--KIEIPLPNE--QSRMEIL 212 (241)
Q Consensus 165 --~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~--~i~l~~p~~--~~r~~il 212 (241)
.....+.+.+++|||.++.+++++++++||+. .+.++.|+. ++|.+|+
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il 235 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEII 235 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEE
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHH
Confidence 22222234444677888999999999999988 456666643 4444443
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=1.8e-19 Score=151.02 Aligned_cols=182 Identities=23% Similarity=0.301 Sum_probs=137.9
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
....+.+|++++|.++.++.+..++.... ..+ ....+++|+||||||||++++++++.++.+++.+++....
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAK-------ARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE 75 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------HHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHH-------ccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC
Confidence 45667799999999999999998886421 111 3456899999999999999999999999999999887653
Q ss_pred ccccchHHHHHHHHHHHHHh--CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------C-------C
Q 026258 104 DKYIGESARLIREMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------D-------Q 168 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~--~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~-------~ 168 (241)
. .. .++..... ..+++|+|||++.+ ....+..+..+++..... . .
T Consensus 76 ~------~~---~l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 76 K------PG---DLAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp S------HH---HHHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred C------hH---HHHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccC
Confidence 2 11 22222222 45789999999998 566777787877764200 0 1
Q ss_pred CCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 169 ~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
.+++++|++||.+..+++++.+ ||...+.+++|+.+++.++++.++..... .++.+.+..+++++
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRS 200 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHc
Confidence 1257899999999999999998 99889999999999999999998876543 56777777777664
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=3e-20 Score=155.92 Aligned_cols=182 Identities=22% Similarity=0.281 Sum_probs=133.9
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
.|..++.|.+|++++|+++.++.+.+++.. + ..++.++++||||||||++++++++.++.+++.++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 444567889999999999999999998863 1 3446678889999999999999999999999999976
Q ss_pred hhcccccchHHHHHHHHHHH-HHh----CCCeEEEEcCcccccCCCCCCCCCcc-HHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 101 AIIDKYIGESARLIREMFGY-ARD----HQPCIIFMDEIDAIGGRRFSEGTSAD-REIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 101 ~~~~~~~~~~~~~~~~~f~~-~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
... ...++..+.. +.. ..+.+|+|||+|.+ . ...+..+..+++... +++.+
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l-----------~~~~~~~~L~~~le~~~-----~~~~i 139 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS-----------GLAESQRHLRSFMEAYS-----SNCSI 139 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG-----------GGHHHHHHHHHHHHHHG-----GGCEE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCccc-----------CcHHHHHHHHHHHHhCC-----CCcEE
Confidence 632 1222222222 221 25689999999999 4 567778888887653 36889
Q ss_pred EEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc---C--CCCCCH-HHHHHHhhhccCC
Q 026258 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA---K--HGEIDY-EAVVKLAEVSRRG 240 (241)
Q Consensus 175 I~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~---~--~~~~~~-~~l~~~~~~~~~~ 240 (241)
|++||.+..+++++++ || ..+.+++|+.+++.+|++.+..... . .-.++. +.+..+++.+.++
T Consensus 140 I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp EEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred EEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 9999999999999999 88 5799999999998777665433211 1 113444 6677776665443
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.83 E-value=5.1e-19 Score=139.56 Aligned_cols=180 Identities=22% Similarity=0.239 Sum_probs=129.0
Q ss_pred cccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEE
Q 026258 22 LHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLK 96 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~ 96 (241)
+....++..|++++|.++.++.+.+++.. ....+++|+||+|+|||++++.+++.+ ...++.
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 33456788999999999999999998863 223459999999999999999999876 345777
Q ss_pred EechhhcccccchHHHHHHHHHHH--HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 97 VVSSAIIDKYIGESARLIREMFGY--ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
+++...... ......+...... .....+.+|+|||+|.+ ....+..+..+++.. ..++.+
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~~~~~~ 135 (226)
T 2chg_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----SKSCRF 135 (226)
T ss_dssp EETTCTTCH--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTEEE
T ss_pred eccccccCh--HHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----CCCCeE
Confidence 776544321 1111111111110 01245789999999998 455666777777653 237889
Q ss_pred EEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 175 IMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 175 I~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
|++|+.+..+.+.+.+ ||. .+.+++|+.++..++++.++..... .++.+.+..+.+.+
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~ 193 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYIS 193 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHH
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHc
Confidence 9999998889999998 885 8999999999999999988765433 35666666555544
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.82 E-value=4.9e-19 Score=150.90 Aligned_cols=183 Identities=26% Similarity=0.326 Sum_probs=124.4
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEechhhc
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAII 103 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~~~~ 103 (241)
.|..+|++++|+++.++.+....... ..+..++.+++|+||||||||++++++++.++. +++.+.+..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 34556999999999998876655432 223344679999999999999999999999974 77777766543
Q ss_pred ccccch-------------------------------------------------HHHHHHHHHHHHHh-----C----C
Q 026258 104 DKYIGE-------------------------------------------------SARLIREMFGYARD-----H----Q 125 (241)
Q Consensus 104 ~~~~~~-------------------------------------------------~~~~~~~~f~~~~~-----~----~ 125 (241)
....+. ....++..+..+.. . .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 322111 11222233322211 1 2
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC------------CCCCCChhccCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN------------RPDVLDPALLRPGR 193 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~------------~~~~l~~~l~~~~r 193 (241)
|+||+|||+|.+ +...+..+..+++.. ...+ ++++++ .+..+++++++ |
T Consensus 190 ~~vl~IDEi~~l-----------~~~~~~~L~~~le~~-----~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R 250 (368)
T 3uk6_A 190 PGVLFIDEVHML-----------DIESFSFLNRALESD-----MAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLD--R 250 (368)
T ss_dssp BCEEEEESGGGS-----------BHHHHHHHHHHTTCT-----TCCE-EEEEESCSEEECBTSSCEEETTCCHHHHT--T
T ss_pred CceEEEhhcccc-----------ChHHHHHHHHHhhCc-----CCCe-eeeecccceeeeeccCCCCcccCCHHHHh--h
Confidence 579999999999 566666666555421 1234 344443 35679999999 9
Q ss_pred cceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 194 LDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 194 ~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
|.. +.+++|+.+++.++++.++..... .++.+.+..+++.++
T Consensus 251 ~~~-i~~~~~~~~e~~~il~~~~~~~~~--~~~~~~l~~l~~~~~ 292 (368)
T 3uk6_A 251 LLI-VSTTPYSEKDTKQILRIRCEEEDV--EMSEDAYTVLTRIGL 292 (368)
T ss_dssp EEE-EEECCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHH
T ss_pred ccE-EEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhc
Confidence 955 899999999999999988876433 567777777776654
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.82 E-value=8.2e-20 Score=140.94 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=117.3
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLK 96 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~ 96 (241)
.+..|++++|.++.++++.+.+.. ..+.+++|+||+|||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 456899999999999999998753 345689999999999999999999987 678888
Q ss_pred Eechhhcc--cccchHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 97 VVSSAIID--KYIGESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 97 v~~~~~~~--~~~~~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
+++..+.. ...+.....+..++..+.. ..+.+|+|||+|.+....... ........+..+++. +++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~~-------~~~~ 153 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALAR-------GELH 153 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHHT-------TSCC
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhcc-------CCeE
Confidence 88877652 3344455566666665543 457899999999996443211 112223444444432 3678
Q ss_pred EEEEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHH
Q 026258 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEIL 212 (241)
Q Consensus 174 vI~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il 212 (241)
+|++|+.+. .+++++.+ ||. .+.+++|+.+++.+|+
T Consensus 154 ~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 154 CVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 899988765 78899999 996 6999999999998875
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.82 E-value=2.6e-19 Score=156.24 Aligned_cols=180 Identities=22% Similarity=0.285 Sum_probs=127.0
Q ss_pred cccCCCCCccccccchHHHH---HHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 22 LHEDPGNVSYSAVGGLSDQI---RELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 22 ~~~~~~~~~~~~l~g~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
+.....+.+|++++|+++.+ +.+...+.. ....+++|+||||||||++++++++.++.+++.++
T Consensus 16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 33345678999999999999 778777753 22368999999999999999999999999999988
Q ss_pred chhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 026258 99 SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (241)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 178 (241)
+.... .......+...........+.+|||||+|.+ ....+..+...++. +.+.+|++|
T Consensus 83 a~~~~---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l-----------~~~~q~~LL~~le~-------~~v~lI~at 141 (447)
T 3pvs_A 83 AVTSG---VKEIREAIERARQNRNAGRRTILFVDEVHRF-----------NKSQQDAFLPHIED-------GTITFIGAT 141 (447)
T ss_dssp TTTCC---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEEEEEE
T ss_pred eccCC---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhh-----------CHHHHHHHHHHHhc-------CceEEEecC
Confidence 65432 1122222222222223456789999999999 34445566666653 357788777
Q ss_pred C--CCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc-----CCCCCCHHHHHHHhhhcc
Q 026258 179 N--RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA-----KHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 179 ~--~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~-----~~~~~~~~~l~~~~~~~~ 238 (241)
+ ....+++++.+ |+ .++.+++|+.+++..+++..+.... ....++.+.+..+++.+.
T Consensus 142 t~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~ 205 (447)
T 3pvs_A 142 TENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN 205 (447)
T ss_dssp SSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC
T ss_pred CCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC
Confidence 3 33579999999 88 4788999999999999999887632 112467777777777644
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=8.3e-20 Score=162.49 Aligned_cols=205 Identities=20% Similarity=0.235 Sum_probs=129.7
Q ss_pred CCCCChhhhhccccCCCCCccccccchHHHHHHHHHHhhcccCC-hHHHHhcCC---CCCceEEEEcCCCChHHHHHHHH
Q 026258 11 PREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMN-PELFLRVGI---KPPKGVLLYGPPGTGKTLLARAI 86 (241)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~-~~~~~~~~~---~~~~~vll~G~~GsGKTtl~~~l 86 (241)
+.........+|..++.|.+|++++|+++.++.+.+++..+... +..+...|. ....+++|+||||||||++++++
T Consensus 18 ~~~~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 18 FQGPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp --------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 33344445566777789999999999999999999999753211 111222222 24578999999999999999999
Q ss_pred HHHhCCceEEEechhhcccccchHHHH---------HHHHHHHH-----HhCCCeEEEEcCcccccCCCCCCCCCccHHH
Q 026258 87 ASNIDANFLKVVSSAIIDKYIGESARL---------IREMFGYA-----RDHQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (241)
Q Consensus 87 a~~l~~~~~~v~~~~~~~~~~~~~~~~---------~~~~f~~~-----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~ 152 (241)
|++++..++.++++........ ... +...|..+ ....+.+|+|||+|.+... +...
T Consensus 98 a~~l~~~~i~in~s~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~ 167 (516)
T 1sxj_A 98 AQELGYDILEQNASDVRSKTLL--NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGG 167 (516)
T ss_dssp HHHTTCEEEEECTTSCCCHHHH--HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTH
T ss_pred HHHcCCCEEEEeCCCcchHHHH--HHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHH
Confidence 9999999999998876432210 000 01111111 1245789999999999542 1122
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHH
Q 026258 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPD--VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAV 230 (241)
Q Consensus 153 ~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~--~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l 230 (241)
...+..+++.. ++.+|++++... .+ +.+++ |+ ..+.|++|+.+++.++++..+..... .++.+.+
T Consensus 168 l~~L~~~l~~~-------~~~iIli~~~~~~~~l-~~l~~--r~-~~i~f~~~~~~~~~~~L~~i~~~~~~--~i~~~~l 234 (516)
T 1sxj_A 168 VGQLAQFCRKT-------STPLILICNERNLPKM-RPFDR--VC-LDIQFRRPDANSIKSRLMTIAIREKF--KLDPNVI 234 (516)
T ss_dssp HHHHHHHHHHC-------SSCEEEEESCTTSSTT-GGGTT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC--CCCTTHH
T ss_pred HHHHHHHHHhc-------CCCEEEEEcCCCCccc-hhhHh--ce-EEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHH
Confidence 34555555542 344666666543 33 34544 44 68999999999999999887755433 3444555
Q ss_pred HHHhhhcc
Q 026258 231 VKLAEVSR 238 (241)
Q Consensus 231 ~~~~~~~~ 238 (241)
..+++.+.
T Consensus 235 ~~la~~s~ 242 (516)
T 1sxj_A 235 DRLIQTTR 242 (516)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 55555543
No 40
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=9.9e-19 Score=148.24 Aligned_cols=179 Identities=17% Similarity=0.263 Sum_probs=124.1
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHh-hcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESI-ELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA------- 92 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~------- 92 (241)
+|..++.|.+|++++|++++++.+..++ .. ....+++|+||+|+||||+++++++.+..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 4556789999999999999999998877 32 22234999999999999999999996521
Q ss_pred ----------------------ceEEEechhhcccccchHHHHHHHHHHHHH--------------hCCCeEEEEcCccc
Q 026258 93 ----------------------NFLKVVSSAIIDKYIGESARLIREMFGYAR--------------DHQPCIIFMDEIDA 136 (241)
Q Consensus 93 ----------------------~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~--------------~~~~~vl~lDe~d~ 136 (241)
.++.++..... ... ...++..+..+. ...+.+++|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMG---NND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC-------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcC---Ccc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 11222211110 000 001222222221 23577999999999
Q ss_pred ccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 137 IGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
+ +...+..+...+++.. .++.+|++||.++.+.+.+++ |+ ..+.+++|+.++..++++..+
T Consensus 146 L-----------~~~~~~~L~~~le~~~-----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 146 L-----------TKDAQAALRRTMEKYS-----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp S-----------CHHHHHHHHHHHHHST-----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred c-----------CHHHHHHHHHHHHhhc-----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 7 6777788888887642 368999999999999999999 88 789999999999999999887
Q ss_pred cCccCCCCCC-HHHHHHHhhhc
Q 026258 217 AGIAKHGEID-YEAVVKLAEVS 237 (241)
Q Consensus 217 ~~~~~~~~~~-~~~l~~~~~~~ 237 (241)
+.... .++ .+.+..+++.+
T Consensus 207 ~~~~~--~~~~~~~l~~i~~~~ 226 (354)
T 1sxj_E 207 TNERI--QLETKDILKRIAQAS 226 (354)
T ss_dssp HHHTC--EECCSHHHHHHHHHH
T ss_pred HHcCC--CCCcHHHHHHHHHHc
Confidence 65433 234 45555555444
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=1e-18 Score=145.27 Aligned_cols=204 Identities=27% Similarity=0.360 Sum_probs=131.9
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhc-CCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-cccch-
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGE- 109 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~~- 109 (241)
+++|++++++.+...+..+.....+...+ ....+.+++|+||||||||++++++++.++.+++.+++..+.. .+.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999998886532111110000 0134578999999999999999999999999999999988764 23222
Q ss_pred HHHHHHHHHHHH-----HhCCCeEEEEcCcccccCCCCCCCCC-ccHHHHHHHHHHHHHhcC-----CCCCCCeEEEEEe
Q 026258 110 SARLIREMFGYA-----RDHQPCIIFMDEIDAIGGRRFSEGTS-ADREIQRTLMELLNQLDG-----FDQLGKVKMIMAT 178 (241)
Q Consensus 110 ~~~~~~~~f~~~-----~~~~~~vl~lDe~d~l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~-----~~~~~~~~vI~tt 178 (241)
....++.++..+ ....+++|+|||+|.+.......... .....+..+..+++.... .....++.+|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 123344444321 11235799999999997554221111 111235556666653210 0122367888885
Q ss_pred ----CCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC-----------ccCCCCCCHHHHHHHhhhcc
Q 026258 179 ----NRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-----------IAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 179 ----~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~-----------~~~~~~~~~~~l~~~~~~~~ 238 (241)
+.+..+++++.+ ||...+.+++|+.+++.+|++.+... ......++.+.+..+++.++
T Consensus 176 ~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 176 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred CcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 456778999998 99988999999999999999842211 11112467788888877763
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=1.4e-18 Score=148.44 Aligned_cols=188 Identities=22% Similarity=0.256 Sum_probs=127.4
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEEech
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSS 100 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---------~~~~~~v~~~ 100 (241)
..++++|.++.++.+..++...+. ...+.+++|+||||||||++++.+++.+ +..++.++|.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347899999999999998864321 1456789999999999999999999988 7788899877
Q ss_pred hhcccc----------------cc-hHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 101 AIIDKY----------------IG-ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 101 ~~~~~~----------------~~-~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
...+.. .+ .....+..++..... ..+.+|+|||+|.+.... ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 543211 01 122223333433332 336799999999993210 145677777776
Q ss_pred hcCCCCCCCeEEEEEeCCC---CCCChhccCCCCcce-EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 163 LDGFDQLGKVKMIMATNRP---DVLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~~---~~l~~~l~~~~r~~~-~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
........++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.++..++++.++........++.+.+..+++.+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 5433213478999999887 678889988 8875 88999999999999999887642212234444444444444
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.79 E-value=1.4e-18 Score=145.80 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=124.0
Q ss_pred CCCCcccccc---chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 26 PGNVSYSAVG---GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 26 ~~~~~~~~l~---g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
.+..+|++++ +.......+...+..+ -..+++++|+||||||||++++++++.+ +.+++.+++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 4566888887 3555566666655432 1245789999999999999999999998 889999998
Q ss_pred hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
..+.....+.........|..... .+++|+|||++.+.+ +...+..+..+++.... . +..+|++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~~---~-~~~iii~~~ 139 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLYL---L-EKQIILASD 139 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHHH---T-TCEEEEEES
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHHHH---C-CCeEEEEec
Confidence 877544333322221222322222 368999999999843 22455566666654421 1 234555554
Q ss_pred -CCC---CCChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 180 -RPD---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 180 -~~~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
.+. .+++.+.+ ||. ..+.+++ +.+++.++++.++..... .++.+.+..+++.+
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT 198 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC
Confidence 444 68889998 885 5789999 999999999998875443 56777777777665
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.79 E-value=6.4e-19 Score=146.98 Aligned_cols=183 Identities=22% Similarity=0.239 Sum_probs=130.5
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCce
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANF 94 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~ 94 (241)
..|..++.|.+|++++|+++.++.+.+.+.. ....+++|+||+|+|||++++++++.+ +..+
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 71 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHC
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCe
Confidence 3455678889999999999999999888753 222359999999999999999999987 3457
Q ss_pred EEEechhhcccccchHHHHHHHHHHHH-H-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 95 LKVVSSAIIDKYIGESARLIREMFGYA-R-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 95 ~~v~~~~~~~~~~~~~~~~~~~~f~~~-~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
+.+++....+. ......+....... . ...+.+++|||+|.+ ....+..+..+++. ..+++
T Consensus 72 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~-----~~~~~ 133 (319)
T 2chq_A 72 IEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEM-----YSKSC 133 (319)
T ss_dssp EEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGTSS-----SSSSE
T ss_pred EEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHHHh-----cCCCC
Confidence 78887654321 11111121211010 1 144789999999998 44444444444332 23478
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+|++||.+..+.+.+.+ |+ ..+.+++|+.+++.++++.+++.... .++.+.+..+++.+.
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~ 194 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISG 194 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTT
T ss_pred eEEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcC
Confidence 999999999899999999 88 47999999999999999988876544 467777777766553
No 45
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=3.8e-18 Score=142.73 Aligned_cols=182 Identities=20% Similarity=0.248 Sum_probs=130.9
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CceE
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID-----ANFL 95 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~-----~~~~ 95 (241)
.+...+.+.+|++++|+++.++.+..++.. ....+++|+||+|+|||++++++++.+. ..++
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 444568889999999999999999988853 2234699999999999999999999873 2366
Q ss_pred EEechhhcccccchHHHHHHHHHHH--HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 96 KVVSSAIIDKYIGESARLIREMFGY--ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
.+++....+. ......+...... .....+.+++|||+|.+ ....+..+..+++.. ..++.
T Consensus 81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~ 142 (327)
T 1iqp_A 81 ELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNVR 142 (327)
T ss_dssp EEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTEE
T ss_pred EeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCCe
Confidence 7766543211 0111111111100 01145789999999999 556677777777653 23788
Q ss_pred EEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 174 MIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 174 vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
+|++++.+..+.+.+.+ |+. .+.+++++.++..++++..+..... .++.+.+..+++.+.
T Consensus 143 ~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~ 202 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAE 202 (327)
T ss_dssp EEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHT
T ss_pred EEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCC
Confidence 99999998889999998 884 7899999999999999988776543 356666666666543
No 46
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=1.5e-18 Score=146.82 Aligned_cols=183 Identities=17% Similarity=0.242 Sum_probs=133.1
Q ss_pred hccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC------Cc
Q 026258 20 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID------AN 93 (241)
Q Consensus 20 ~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~------~~ 93 (241)
..|..++.|.+|++++|++++++.+..++.. ....+++|+||||+|||++++++++.++ ..
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 3455668899999999999999999998853 2224599999999999999999998864 35
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHH-------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHH
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYA-------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELL 160 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~-------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll 160 (241)
+..+++..... .......+.. +... ....+.+|+|||+|.+ ....+..+..++
T Consensus 92 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll~~l 157 (353)
T 1sxj_D 92 ILELNASDERG--ISIVREKVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALRRTM 157 (353)
T ss_dssp EEEECSSSCCC--HHHHTTHHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHHHHH
T ss_pred eEEEccccccc--hHHHHHHHHH-HhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHHHHH
Confidence 77777655311 1111111111 1110 1134579999999999 566677787777
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 161 NQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 161 ~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
++.. .++.+|+++|.+..+.+++++ |+ ..+.+++|+.++...+++..+..... .++.+.+..+++.+.+
T Consensus 158 e~~~-----~~~~~il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 158 ETYS-----GVTRFCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAG 226 (353)
T ss_dssp HHTT-----TTEEEEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSS
T ss_pred HhcC-----CCceEEEEeCchhhCcchhhc--cC-ceEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCC
Confidence 7643 367888899999889999999 88 47899999999999999988765433 5677888887777654
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=2.4e-18 Score=141.00 Aligned_cols=174 Identities=24% Similarity=0.288 Sum_probs=114.2
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc-ccchH
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-YIGES 110 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~-~~~~~ 110 (241)
+.++|.++..+.+....... .......+...+.+++|+||||||||++++++++.++.+++.++++..... .....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45778877777666642110 011122234566789999999999999999999999999999988753321 11223
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCh-hc
Q 026258 111 ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKMIMATNRPDVLDP-AL 188 (241)
Q Consensus 111 ~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~vI~tt~~~~~l~~-~l 188 (241)
...++..|..+....+++|+|||+|.+++..... ..........+..++ +... ...++.+|+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~---~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLL---KKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHT---TCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHh---cCccCCCCCEEEEEecCChhhcchhhh
Confidence 3566778888777788999999999997654321 112333344444433 3222 2336778899998877766 56
Q ss_pred cCCCCcceEEEcCCCCH-HHHHHHHHH
Q 026258 189 LRPGRLDRKIEIPLPNE-QSRMEILKI 214 (241)
Q Consensus 189 ~~~~r~~~~i~l~~p~~-~~r~~il~~ 214 (241)
.+ ||...+.+|+++. ++...++..
T Consensus 186 ~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hc--ccceEEcCCCccHHHHHHHHHHh
Confidence 66 9988888877765 555555443
No 48
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=2e-19 Score=160.68 Aligned_cols=189 Identities=24% Similarity=0.360 Sum_probs=124.2
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-------
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID------- 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~------- 104 (241)
++++|++++++.+.+.+.... + ...+ ++.+++|+|||||||||+++++++.++.++..+++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~----~--~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQK----L--TKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHH----H--SSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHhccHHHHHHHHHHHHHHHH----h--cccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 458999999999988765321 0 1122 5678999999999999999999999999999998876543
Q ss_pred --cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC--CC--------CCCCe
Q 026258 105 --KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--FD--------QLGKV 172 (241)
Q Consensus 105 --~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~--------~~~~~ 172 (241)
.+.+.....+...|..+....| +++|||+|.+.... ....+..+.++++.... +. ...++
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~-------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF-------RGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh-------ccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 2233333444455555444444 99999999995432 11123444444432110 00 11468
Q ss_pred EEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcC-----ccC---CCCCCHHHHHHHhhhcc
Q 026258 173 KMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-----IAK---HGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 173 ~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~-----~~~---~~~~~~~~l~~~~~~~~ 238 (241)
++|+|||.++.+++++++ || ..+.++.|+.+++.+|++.++.. ... .-.++.+.+..+++.+.
T Consensus 226 ~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp EEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred EEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 999999999999999999 99 57999999999999999987622 111 12457788887776443
No 49
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=2.8e-18 Score=143.35 Aligned_cols=178 Identities=14% Similarity=0.146 Sum_probs=130.1
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceE
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFL 95 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~ 95 (241)
.+...+.|.+|++++|+++.++.+.+++.. ....+++|+||+|+|||++++.+++.+ ...++
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 76 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVL 76 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEE
Confidence 344557788999999999999999998853 222349999999999999999999986 34577
Q ss_pred EEechhhcccccchHHHHHHHHHHHHH-------hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC
Q 026258 96 KVVSSAIIDKYIGESARLIREMFGYAR-------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ 168 (241)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~f~~~~-------~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 168 (241)
.+++....+ ...++..+.... ...+.+++|||+|.+ ....+..+..+++..
T Consensus 77 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~----- 134 (323)
T 1sxj_B 77 ELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMELY----- 134 (323)
T ss_dssp EECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHHT-----
T ss_pred EecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhcc-----
Confidence 777654321 122333333322 234789999999998 455566677777653
Q ss_pred CCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 169 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 169 ~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+++.+|++|+.+..+.+.+++ |+ ..+.+++|+.++..++++.+++.... .++.+.+..+++.+.
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~ 199 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAE 199 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHT
T ss_pred CCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcC
Confidence 2478899999998899999999 87 48999999999999999988765433 356666666665543
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.78 E-value=3.6e-18 Score=136.30 Aligned_cols=178 Identities=18% Similarity=0.272 Sum_probs=125.2
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------- 93 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------- 93 (241)
.+...+.+..|++++|.++.++.+.+.+... ..+..++|+||+|+|||++++.+++.+...
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~ 79 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 79 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3445677888999999999999999988531 234579999999999999999999887432
Q ss_pred -----------------eEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHH
Q 026258 94 -----------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (241)
Q Consensus 94 -----------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~ 152 (241)
++.++... ......+..++..+. ...+.+|+|||+|.+ +...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~ 142 (250)
T 1njg_A 80 CGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHS 142 (250)
T ss_dssp CSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHH
T ss_pred CcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHH
Confidence 12222111 011222334443322 234789999999998 5555
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHH
Q 026258 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232 (241)
Q Consensus 153 ~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 232 (241)
...+..+++. ...++.+|++|+.+..+.+.+.+ |+ ..+.+++++.++..++++.++..... .++.+.+..
T Consensus 143 ~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~ 212 (250)
T 1njg_A 143 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQL 212 (250)
T ss_dssp HHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHH
Confidence 6666666653 23478999999988888888988 76 78999999999999999988865432 445555555
Q ss_pred Hhhhc
Q 026258 233 LAEVS 237 (241)
Q Consensus 233 ~~~~~ 237 (241)
+++.+
T Consensus 213 l~~~~ 217 (250)
T 1njg_A 213 LARAA 217 (250)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55544
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.78 E-value=2.2e-18 Score=151.51 Aligned_cols=172 Identities=26% Similarity=0.363 Sum_probs=124.3
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceE
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFL 95 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~ 95 (241)
..+..+++++|.++.++++.+.+.. ...++++|+||||||||++++++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3566889999999999999998863 345689999999999999999999997 67788
Q ss_pred EEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 026258 96 KVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (241)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 175 (241)
.+++. ..+.+.....++.+|..+....+.||||| + ....++.+...+ ..+.+++|
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---------~~~a~~~L~~~L-------~~g~v~vI 295 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---------AIDASNILKPSL-------ARGELQCI 295 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCT-------TSSSCEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---------chhHHHHHHHhh-------cCCCEEEE
Confidence 88877 45556666677888888888888999999 1 111222222222 23578999
Q ss_pred EEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC--CCCHHHHHHHhhhcc
Q 026258 176 MATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEVSR 238 (241)
Q Consensus 176 ~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~~~~ 238 (241)
++||..+ .+++++++ ||. .+.++.|+.+++.+|++.+......+. .++.+.+..+++++.
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~ 362 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSD 362 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999876 68999999 995 699999999999999998887754333 456677776666554
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.78 E-value=6.2e-18 Score=140.77 Aligned_cols=183 Identities=24% Similarity=0.385 Sum_probs=131.9
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCC----CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccc
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGI----KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK 105 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~ 105 (241)
.++|++++++.+...+... ..++ .+..+++|+||||||||++++++++.+ +.+++.++|..+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~--------~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHH--------HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hcCCHHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 5789999999999988643 1111 223579999999999999999999988 566999998876432
Q ss_pred ccchHHHHH------------HHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC-----
Q 026258 106 YIGESARLI------------REMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ----- 168 (241)
Q Consensus 106 ~~~~~~~~~------------~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~----- 168 (241)
.. ....+ ..+.........++|+|||+|.+ +...+..+..+++.......
T Consensus 90 ~~--~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 90 HA--VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp TH--HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEE
T ss_pred cc--HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEE
Confidence 10 00000 12223334455689999999999 67788888888876431111
Q ss_pred -CCCeEEEEEeCC--------------------------CCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc-
Q 026258 169 -LGKVKMIMATNR--------------------------PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA- 220 (241)
Q Consensus 169 -~~~~~vI~tt~~--------------------------~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~- 220 (241)
..++.+|+|||. ...+++.+.+ ||+..+.+++|+.+++..|++.+++...
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 126779999998 3357788888 9999999999999999999998776531
Q ss_pred ------CCCCCCHHHHHHHhhhcc
Q 026258 221 ------KHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 221 ------~~~~~~~~~l~~~~~~~~ 238 (241)
....++.+.+..+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~ 258 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGY 258 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSC
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCC
Confidence 223567888888888655
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=7.1e-18 Score=156.47 Aligned_cols=179 Identities=23% Similarity=0.377 Sum_probs=133.4
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCC----CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIK----PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
..++|++++++.+.+.+... ..+.. +..+++|+||||||||++++++++.+ +.+++.++|+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRA--------RAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------TTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHH--------HcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 45899999999999988753 22222 22379999999999999999999998 67899999999887
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC------CCCCeEEEEEe
Q 026258 105 KYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD------QLGKVKMIMAT 178 (241)
Q Consensus 105 ~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~~~vI~tt 178 (241)
..... . ......+....++||+|||++.+ +...+..+.++++.-.-.. ...++++|+||
T Consensus 563 ~~~~~-~---~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 KHSTS-G---GQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccccc-c---chhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 65444 1 12233444566789999999998 7888999999998743111 22368999999
Q ss_pred CCCCC------------CChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc-------cCCCCCCHHHHHHHhh
Q 026258 179 NRPDV------------LDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-------AKHGEIDYEAVVKLAE 235 (241)
Q Consensus 179 ~~~~~------------l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~-------~~~~~~~~~~l~~~~~ 235 (241)
|.+.. +.+.+.+ ||+..+.+++|+.+++..|++.++... ...-.++.+++..+++
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 97543 7788888 998899999999999999998776553 1222567888888866
No 54
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.78 E-value=2.5e-18 Score=150.04 Aligned_cols=183 Identities=19% Similarity=0.304 Sum_probs=121.1
Q ss_pred CCCCcccccc-c--hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEE
Q 026258 26 PGNVSYSAVG-G--LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKV 97 (241)
Q Consensus 26 ~~~~~~~~l~-g--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v 97 (241)
.+..+|++++ | +......+...+..+ + . .++++|+||||+|||||++++++.+ +..++.+
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4566899977 5 344444555444321 1 2 5789999999999999999999988 7889999
Q ss_pred echhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 026258 98 VSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA 177 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t 177 (241)
++..+...............|.......+++|+|||++.+.+ ....+..+..+++.+.. .+..+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~~----~~~~iIit 233 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELHD----SGKQIVIC 233 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHHT----TTCEEEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH----CCCeEEEE
Confidence 988775433322221111223333333678999999999943 22456667677665432 14456666
Q ss_pred eCC-CC---CCChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 178 TNR-PD---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 178 t~~-~~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
|+. +. .+++.+++ ||. ..+.+++|+.++|.+|++..+..... .++.+.+..+++.+
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~--~i~~e~l~~la~~~ 295 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHG--ELPEEVLNFVAENV 295 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC--CCCTTHHHHHHHHC
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhc
Confidence 665 33 37889988 885 67899999999999999988764333 34444455554443
No 55
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=5e-18 Score=144.66 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=130.9
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHh-cCC-CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc-ccchH
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLR-VGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK-YIGES 110 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~-~~~-~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~-~~~~~ 110 (241)
++|++++++.+...+............ .+. .++.+++|+||||||||++++++|+.++.+++.+++..+... +.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 699999999999988533211100000 011 246789999999999999999999999999999999987643 44443
Q ss_pred -HHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCCCCcc---HHHHHHHHHHHHHhc------C----------C
Q 026258 111 -ARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEGTSAD---REIQRTLMELLNQLD------G----------F 166 (241)
Q Consensus 111 -~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~~~~~---~~~~~~l~~ll~~~~------~----------~ 166 (241)
...+...+..+ ....+++|||||+|.+...........+ ...+..+..+++... . .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 34455555544 2345689999999999765433322222 226677777776110 0 0
Q ss_pred CCCCCeEEEEEeCCC----------CC-----------------------------------CChhccCCCCcceEEEcC
Q 026258 167 DQLGKVKMIMATNRP----------DV-----------------------------------LDPALLRPGRLDRKIEIP 201 (241)
Q Consensus 167 ~~~~~~~vI~tt~~~----------~~-----------------------------------l~~~l~~~~r~~~~i~l~ 201 (241)
-...++.+|++++.. .. +.+.+.+ ||+..+.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 122356666666642 11 6778888 999999999
Q ss_pred CCCHHHHHHHHHH----hHcC-------ccCCCCCCHHHHHHHhhh
Q 026258 202 LPNEQSRMEILKI----HAAG-------IAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 202 ~p~~~~r~~il~~----~~~~-------~~~~~~~~~~~l~~~~~~ 236 (241)
+|+.+.+.+|++. +++. ....-.++.+++..+++.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~ 300 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK 300 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHh
Confidence 9999999999885 2211 122224677888877753
No 56
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.77 E-value=8.1e-18 Score=143.36 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=127.1
Q ss_pred ccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------
Q 026258 21 MLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN------- 93 (241)
Q Consensus 21 ~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~------- 93 (241)
.+..++.+..|++++|+++.++.+...+.. + ..++.++|+||+|+|||++++++++.++..
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 72 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSC
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 344567788999999999999999998853 1 334578999999999999999999988542
Q ss_pred -----------------eEEEechhhcccccchHHHHHHHHHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHH
Q 026258 94 -----------------FLKVVSSAIIDKYIGESARLIREMFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREI 152 (241)
Q Consensus 94 -----------------~~~v~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~ 152 (241)
++.++.... .... .++.++..+. ...+.+++|||+|.+ +...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~ 135 (373)
T 1jr3_A 73 CGVCDNCREIEQGRFVDLIEIDAASR--TKVE----DTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHS 135 (373)
T ss_dssp CSSSHHHHHHHTSCCSSCEEEETTCS--CCSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHH
T ss_pred CcccHHHHHHhccCCCceEEeccccc--CCHH----HHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHH
Confidence 233322210 1111 1233343333 234689999999998 5555
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHH
Q 026258 153 QRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK 232 (241)
Q Consensus 153 ~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 232 (241)
+..+...+++ ..+++.+|++|+.+..+.+.+++ |+ ..+.+++|+.++..++++.+++.... .++.+.+..
T Consensus 136 ~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~ 205 (373)
T 1jr3_A 136 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQL 205 (373)
T ss_dssp HHHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHH
Confidence 6666666653 23478999999988888999998 87 78999999999999999988765433 456666666
Q ss_pred Hhhhc
Q 026258 233 LAEVS 237 (241)
Q Consensus 233 ~~~~~ 237 (241)
+++.+
T Consensus 206 l~~~~ 210 (373)
T 1jr3_A 206 LARAA 210 (373)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 66554
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.77 E-value=2e-18 Score=161.90 Aligned_cols=185 Identities=23% Similarity=0.369 Sum_probs=124.5
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEE
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLK 96 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~ 96 (241)
.+.+|++++|.++.++++.+.+.. ...++++|+||||||||++++++|+.+ +..++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 456889999999999999998853 345689999999999999999999988 778999
Q ss_pred Eechhhc--ccccchHHHHHHHHHHHHHhC-CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeE
Q 026258 97 VVSSAII--DKYIGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVK 173 (241)
Q Consensus 97 v~~~~~~--~~~~~~~~~~~~~~f~~~~~~-~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 173 (241)
+++..+. ..+.+.....++.++..+... .+.||||||+|.+.+..... ........+..+++. +.+.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~-------~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALAR-------GELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT-------TCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhC-------CCeE
Confidence 9988876 355667778888888888765 68899999999997554221 122333445555532 3678
Q ss_pred EEEEeCCCC----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC--CCCHHHHHHHhhhc
Q 026258 174 MIMATNRPD----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEVS 237 (241)
Q Consensus 174 vI~tt~~~~----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~~~ 237 (241)
+|++|+.++ .+++++.+ ||.. +.++.|+.+++.+|++.++.....++ .++.+.+..+++++
T Consensus 302 ~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred EEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 999888663 47889999 9965 99999999999999997776543332 23555565555544
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.76 E-value=3.6e-18 Score=131.21 Aligned_cols=152 Identities=24% Similarity=0.398 Sum_probs=110.7
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEE
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKV 97 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v 97 (241)
+..|++++|.++.++.+.+.+.. ....+++|+||+|||||++++++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 55789999999999999988753 335689999999999999999999987 6778888
Q ss_pred echhhcc--cccchHHHHHHHHHHHHHhC-CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEE
Q 026258 98 VSSAIID--KYIGESARLIREMFGYARDH-QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKM 174 (241)
Q Consensus 98 ~~~~~~~--~~~~~~~~~~~~~f~~~~~~-~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 174 (241)
++..+.. ...+.....+..++..+... .+.+|+|||+|.+....... .........+..+++. +++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~~~~~l~~~~~~-------~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALDAGNILKPMLAR-------GELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCCTHHHHHHHHHT-------TCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchHHHHHHHHHHhc-------CCeeE
Confidence 8776642 23344555566667666554 67899999999996443211 1112233444444432 36789
Q ss_pred EEEeCCCC-----CCChhccCCCCcceEEEcCCCC
Q 026258 175 IMATNRPD-----VLDPALLRPGRLDRKIEIPLPN 204 (241)
Q Consensus 175 I~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~ 204 (241)
|++++.+. .+++++++ ||. .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99998764 68899999 996 58898885
No 59
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.1e-18 Score=142.57 Aligned_cols=160 Identities=7% Similarity=0.063 Sum_probs=116.8
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEEechhhc
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKVVSSAII 103 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v~~~~~~ 103 (241)
|.|.+++.+++..++...+ .-..+.+++|+||||||||++++.+++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 7899999999998887532 22567899999999999999999999998 3467888887654
Q ss_pred ccc----------------cchHHHHHHHHHHHH--HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC
Q 026258 104 DKY----------------IGESARLIREMFGYA--RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (241)
Q Consensus 104 ~~~----------------~~~~~~~~~~~f~~~--~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 165 (241)
+.. .+.....+...|... ....+.|++|||+|.+. .+..++.+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 321 112234556666654 34557899999999994 1356666665432
Q ss_pred CCCCCCeEEEEEeCCCCC----CChhccCCCCcc-eEEEcCCCCHHHHHHHHHHhHcCc
Q 026258 166 FDQLGKVKMIMATNRPDV----LDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 166 ~~~~~~~~vI~tt~~~~~----l~~~l~~~~r~~-~~i~l~~p~~~~r~~il~~~~~~~ 219 (241)
....++.+|+++|..+. +++++++ ||. ..+.|++++.++..+|++.+++..
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 23347899999998764 3444566 786 579999999999999999888764
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=1e-17 Score=155.46 Aligned_cols=184 Identities=22% Similarity=0.328 Sum_probs=133.4
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceEEE
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFLKV 97 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~~v 97 (241)
+..|++++|.++.++++.+.+.. ...++++|+||||||||++++++++.+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 45788999999999999998853 356789999999999999999999987 5567777
Q ss_pred echhhc--ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 026258 98 VSSAII--DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (241)
Q Consensus 98 ~~~~~~--~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 175 (241)
++..+. ..+.+..+..++.++..+....+.+|||||+|.+++..... ....... .+ +......+.+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~----~~---L~~~l~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAA----NL---IKPLLSSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHH----HH---HSSCSSSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHH----HH---HHHHHhCCCeEEE
Confidence 776665 35667788888999988887778999999999997654321 1122222 22 2222334578899
Q ss_pred EEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCC--CCCCHHHHHHHhhh
Q 026258 176 MATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH--GEIDYEAVVKLAEV 236 (241)
Q Consensus 176 ~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~--~~~~~~~l~~~~~~ 236 (241)
++|+.++ .+++++.+ ||. .+.++.|+.+++.+|++.+....... -.++.+.+..++++
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~ 384 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVEL 384 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 9988642 56788988 996 79999999999999999877553222 23455555555444
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.76 E-value=7.2e-18 Score=144.24 Aligned_cols=179 Identities=23% Similarity=0.272 Sum_probs=123.4
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCceEEEech
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-----------DANFLKVVSS 100 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----------~~~~~~v~~~ 100 (241)
++++|.++.++.+.+++..+.. + ..+.+++|+||||||||++++.+++.+ +..++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------N-EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------T-CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 7899999999999988865321 1 445689999999999999999999987 8889999987
Q ss_pred hhc-ccc------c-----------c-hHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHH-HHHHH
Q 026258 101 AII-DKY------I-----------G-ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRT-LMELL 160 (241)
Q Consensus 101 ~~~-~~~------~-----------~-~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~-l~~ll 160 (241)
... +.. . + .....+..++....... .+|+|||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC----------CCceeHHHHh
Confidence 653 110 0 0 01222333333333333 399999999984211 1223 33444
Q ss_pred HHhcCCCCCCCeEEEEEeCCC---CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 161 NQLDGFDQLGKVKMIMATNRP---DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 161 ~~~~~~~~~~~~~vI~tt~~~---~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
... .++.+|++||.. +.+++.+.+ ||...+.+++|+.++..++++.++........++.+.+..+++.+
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 322 489999999886 678888888 887799999999999999999887632112345555555555554
Q ss_pred c
Q 026258 238 R 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 232 ~ 232 (384)
T 2qby_B 232 A 232 (384)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=2.3e-17 Score=139.35 Aligned_cols=181 Identities=22% Similarity=0.247 Sum_probs=129.6
Q ss_pred hhccccCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----c
Q 026258 19 YNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA-----N 93 (241)
Q Consensus 19 ~~~~~~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~-----~ 93 (241)
...|..++.|.+|++++|++++++.+...+.. | ...+++|+|||||||||+++++++.+.. .
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 34555668899999999999999999888752 1 2234999999999999999999998743 3
Q ss_pred eEEEechhhcccccchHHHHHHHHHHHHH------hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC
Q 026258 94 FLKVVSSAIIDKYIGESARLIREMFGYAR------DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (241)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~~~~~f~~~~------~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 167 (241)
+..++.....+ ...++....... ...+.+++|||+|.+ ....+..+..++++..
T Consensus 79 ~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~~--- 138 (340)
T 1sxj_C 79 VLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERYT--- 138 (340)
T ss_dssp EEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHTT---
T ss_pred EEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcCC---
Confidence 55555543211 112222222221 124689999999998 4556777777777542
Q ss_pred CCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 168 ~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
.++.+|++||.+..+.+++++ |+ ..+.+++++.++..+.+...++.... .++.+.+..+++.+.+
T Consensus 139 --~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 139 --KNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNG 203 (340)
T ss_dssp --TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTT
T ss_pred --CCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 367889999999999999999 88 47899999999999988887755433 4566666666665543
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=1.9e-17 Score=153.71 Aligned_cols=182 Identities=23% Similarity=0.350 Sum_probs=133.9
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCC----CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhccc---
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIK----PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK--- 105 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~--- 105 (241)
.++|++++++.+..++... +.|+. +..+++|+||||||||++++++++.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4789999999888877543 33332 33479999999999999999999999999999999887542
Q ss_pred ---------ccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC------CC
Q 026258 106 ---------YIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ------LG 170 (241)
Q Consensus 106 ---------~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~------~~ 170 (241)
+.+.... ..+...+....++||+|||++.+ ++..+..+.++++.-.-... ..
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 2221111 12344455567899999999998 77888888888886321111 13
Q ss_pred CeEEEEEeCCCC-------------------------CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc-----
Q 026258 171 KVKMIMATNRPD-------------------------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA----- 220 (241)
Q Consensus 171 ~~~vI~tt~~~~-------------------------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~----- 220 (241)
++.+|+|||... .+++.+++ ||+..+.|++|+.+++..|++.++....
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 675 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ 675 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999998743 46778888 9988999999999999999998876421
Q ss_pred --CCCCCCHHHHHHHhhhc
Q 026258 221 --KHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 221 --~~~~~~~~~l~~~~~~~ 237 (241)
..-.++.+.+..+++..
T Consensus 676 ~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 676 KGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp TTEEEEECHHHHHHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhC
Confidence 11246778888887765
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=9.7e-18 Score=155.54 Aligned_cols=172 Identities=25% Similarity=0.338 Sum_probs=125.1
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCceE
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DANFL 95 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----------~~~~~ 95 (241)
..+..+++++|.++.++++.+.+.. ...++++|+||||||||++++++|+.+ +..++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3556789999999999999998863 345689999999999999999999997 77788
Q ss_pred EEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 026258 96 KVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (241)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 175 (241)
.+++ ...+.|..+..++.+|..+....+.|||||. ....+..+... -..+.+.+|
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~---------------~~~~~~~L~~~-------l~~~~v~~I 295 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA---------------AIDASNILKPS-------LARGELQCI 295 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEECC-----------------------CCC-------TTSSSCEEE
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEcC---------------chhHHHHHHHH-------HhcCCEEEE
Confidence 8877 3445667777888999999888899999991 11122222222 224579999
Q ss_pred EEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCC--CCCHHHHHHHhhhcc
Q 026258 176 MATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEVSR 238 (241)
Q Consensus 176 ~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~~~~ 238 (241)
++||..+ .+++++++ || ..+.++.|+.+++.+|++.+........ .++.+.+..+++++.
T Consensus 296 ~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~ 362 (758)
T 3pxi_A 296 GATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSD 362 (758)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred eCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 9999887 79999999 99 6699999999999999998887754433 456666666665543
No 65
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.75 E-value=4.8e-19 Score=153.21 Aligned_cols=168 Identities=24% Similarity=0.280 Sum_probs=78.2
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCC-CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcc-cccch-
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIID-KYIGE- 109 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~~- 109 (241)
+|+|++++++.+..++.+++.+...+..+.. .++.+++|+||||||||++++++|+.++.+++.++++.+.. .+.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5899999999999998776544443333322 24578999999999999999999999999999999988876 46663
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEE-eCCCCCCChhc
Q 026258 110 SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMA-TNRPDVLDPAL 188 (241)
Q Consensus 110 ~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~t-t~~~~~l~~~l 188 (241)
....++.+|..+... +.+||++.+.... . .....+.+..++..+++......+ +++ ||.++.+++++
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~~---~---~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRARA---E---DVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhccc---h---hhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 677888888877653 3478887764322 1 122234555666666655444333 454 89999999999
Q ss_pred cCCCCcceEEEcCCCCHH-HHHHHH
Q 026258 189 LRPGRLDRKIEIPLPNEQ-SRMEIL 212 (241)
Q Consensus 189 ~~~~r~~~~i~l~~p~~~-~r~~il 212 (241)
++++||+..|+++.|+.. .|.+|+
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhh
Confidence 999999999999999987 677775
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.74 E-value=1.1e-17 Score=141.54 Aligned_cols=165 Identities=21% Similarity=0.294 Sum_probs=105.9
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE----Eec
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK----VVS 99 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~----v~~ 99 (241)
...++.+|++++|.++.++.+...+.. ....+++|+||||||||++++++++.++..... ++|
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 82 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSS 82 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccc
Confidence 456788999999999988776554432 123469999999999999999999988631100 111
Q ss_pred hhhcc---------------------cccchHHHH------HHHHHHHH---------HhCCCeEEEEcCcccccCCCCC
Q 026258 100 SAIID---------------------KYIGESARL------IREMFGYA---------RDHQPCIIFMDEIDAIGGRRFS 143 (241)
Q Consensus 100 ~~~~~---------------------~~~~~~~~~------~~~~f~~~---------~~~~~~vl~lDe~d~l~~~~~~ 143 (241)
..... ...+..... +...+... ....+++|+|||++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l------ 156 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLL------ 156 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS------
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhC------
Confidence 11100 000000000 01111111 1123689999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhc-CCCC-------CCCeEEEEEeCCCC-CCChhccCCCCcceEEEcCCC-CHHHHHHHHH
Q 026258 144 EGTSADREIQRTLMELLNQLD-GFDQ-------LGKVKMIMATNRPD-VLDPALLRPGRLDRKIEIPLP-NEQSRMEILK 213 (241)
Q Consensus 144 ~~~~~~~~~~~~l~~ll~~~~-~~~~-------~~~~~vI~tt~~~~-~l~~~l~~~~r~~~~i~l~~p-~~~~r~~il~ 213 (241)
....+..+..+++.-. .+.. ..++++|+++|..+ .+++++.+ ||...+.+++| +.+.+.+|++
T Consensus 157 -----~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 157 -----EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp -----CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHH
Confidence 6677788888887621 0111 12688899998744 79999999 99888999988 6777878886
Q ss_pred H
Q 026258 214 I 214 (241)
Q Consensus 214 ~ 214 (241)
.
T Consensus 230 ~ 230 (350)
T 1g8p_A 230 R 230 (350)
T ss_dssp H
T ss_pred H
Confidence 6
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=6.3e-17 Score=138.04 Aligned_cols=188 Identities=25% Similarity=0.326 Sum_probs=126.3
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCceEEEechhh
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI------DANFLKVVSSAI 102 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l------~~~~~~v~~~~~ 102 (241)
..+++++|.++.++.+.+++...+. + ..+.+++|+||+|||||++++.+++.+ +..++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~-~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--------E-EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--------T-CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3457899999999999998864321 1 445689999999999999999999988 788899987643
Q ss_pred cccc----------------cc-hHHHHHHHHHHHHHhCC-CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc
Q 026258 103 IDKY----------------IG-ESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD 164 (241)
Q Consensus 103 ~~~~----------------~~-~~~~~~~~~f~~~~~~~-~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 164 (241)
.... .+ .....+..++....... |.+|+|||++.+.... +. ..+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~---~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------ND---DILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CS---THHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cC---HHHHHHhhchh
Confidence 2100 01 12233344444444433 8899999999985321 11 23334443332
Q ss_pred CCCCCCCeEEEEEeCCC---CCCChhccCCCCcc-eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 165 GFDQLGKVKMIMATNRP---DVLDPALLRPGRLD-RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 165 ~~~~~~~~~vI~tt~~~---~~l~~~l~~~~r~~-~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.. ...++.+|++++.+ ..+++.+.+ ||. ..+.+++++.++..++++.++........++.+.+..+++.+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 22 23478899999876 457777777 665 4899999999999999998776433233566666666665544
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=1.1e-16 Score=137.00 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=127.8
Q ss_pred ccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCceEEEechhhc
Q 026258 30 SYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPK--GVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSAII 103 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~~~~~~ 103 (241)
.+++++|.++.++++..++..... + ..+. +++|+||+|||||++++.+++.+ +..++.++|....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 347899999999999998864311 1 2334 89999999999999999999998 5678888876543
Q ss_pred ccc----------------cc-hHHHHHHHHHHHHHh-CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC
Q 026258 104 DKY----------------IG-ESARLIREMFGYARD-HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG 165 (241)
Q Consensus 104 ~~~----------------~~-~~~~~~~~~f~~~~~-~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 165 (241)
+.. .+ ........+...... ..|.+|+|||++.+ +...+..+..+++....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC
Confidence 210 00 111222222222222 44789999999998 45555555555543211
Q ss_pred CCCCCCeEEEEEeCCC---CCCChhccCCCCcce-EEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 166 FDQLGKVKMIMATNRP---DVLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 166 ~~~~~~~~vI~tt~~~---~~l~~~l~~~~r~~~-~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
....++.+|+++|.+ ..+.+.+.+ ||.. .+.+++++.++..++++..+........++.+.+..+++.++
T Consensus 155 -~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 155 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred -CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 001378999999987 567888877 7765 799999999999999998876533233667778777777763
No 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=8.2e-17 Score=137.75 Aligned_cols=203 Identities=19% Similarity=0.255 Sum_probs=123.8
Q ss_pred cccchHHHHHHHHHHhhcccCChHH------------------HHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce
Q 026258 33 AVGGLSDQIRELRESIELPLMNPEL------------------FLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~------------------~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~ 94 (241)
.++|++++++.+..++...+..... ... ......+++|+||||||||++++++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4899999999999888533222111 001 113456899999999999999999999999999
Q ss_pred EEEechhhcc-cccchH-HHHHHHHHHHH----HhCCCeEEEEcCcccccCCCCCCC---CCccHHHHHHHHHHHHHhc-
Q 026258 95 LKVVSSAIID-KYIGES-ARLIREMFGYA----RDHQPCIIFMDEIDAIGGRRFSEG---TSADREIQRTLMELLNQLD- 164 (241)
Q Consensus 95 ~~v~~~~~~~-~~~~~~-~~~~~~~f~~~----~~~~~~vl~lDe~d~l~~~~~~~~---~~~~~~~~~~l~~ll~~~~- 164 (241)
+.+++..+.. .+.+.. ...+...+... ....+++|+|||+|.+........ .......+..+..+++...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 9999887642 222222 23334444322 223568999999999965422111 1112236777777776321
Q ss_pred CC---------------CCCCCeEEEEEeCCC-----------------------------------------CCCChhc
Q 026258 165 GF---------------DQLGKVKMIMATNRP-----------------------------------------DVLDPAL 188 (241)
Q Consensus 165 ~~---------------~~~~~~~vI~tt~~~-----------------------------------------~~l~~~l 188 (241)
.+ ....++.+|+++|.. ..+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 00 011356778777620 1255677
Q ss_pred cCCCCcceEEEcCCCCHHHHHHHHHH----hHc-------CccCCCCCCHHHHHHHhhhcc
Q 026258 189 LRPGRLDRKIEIPLPNEQSRMEILKI----HAA-------GIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 189 ~~~~r~~~~i~l~~p~~~~r~~il~~----~~~-------~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+ ||+..+.|++++.++...|+.. +++ .....-.++.+++..+++..+
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhc
Confidence 77 8988899999999999999862 111 111122467788888877654
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=1.8e-16 Score=133.35 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=113.6
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc-----
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII----- 103 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~----- 103 (241)
..+++++|+++.++.+..++.. +.+++|+||||||||++++++++.++.+++.+.+....
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3567899999999999888742 35899999999999999999999999999988874211
Q ss_pred -ccccchHHHHHHHHHHHHHhCC---CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC------CCCCCCeE
Q 026258 104 -DKYIGESARLIREMFGYARDHQ---PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------FDQLGKVK 173 (241)
Q Consensus 104 -~~~~~~~~~~~~~~f~~~~~~~---~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------~~~~~~~~ 173 (241)
........ ...+ ..... .++|+|||++.+ +...+..+...+++... .....++.
T Consensus 89 ~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 89 IGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp HEEEEEETT---TTEE--EEEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred CCceeecCC---CCce--EeccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 11000000 0000 00111 269999999998 67778888888876321 11223577
Q ss_pred EEEEeCCCC-----CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCc
Q 026258 174 MIMATNRPD-----VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI 219 (241)
Q Consensus 174 vI~tt~~~~-----~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~ 219 (241)
+|+|+|..+ .+++++++ ||...+.+++|+.+++.+|++.+....
T Consensus 153 viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 777777443 38899999 998889999999999999999887653
No 71
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.72 E-value=4.2e-17 Score=130.38 Aligned_cols=174 Identities=15% Similarity=0.210 Sum_probs=118.7
Q ss_pred CCCCccccccc---hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEEec
Q 026258 26 PGNVSYSAVGG---LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVS 99 (241)
Q Consensus 26 ~~~~~~~~l~g---~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~---~~~~~v~~ 99 (241)
.+..+|++++| .++.++.+..++.. ..+.+++|+||||||||++++++++.+. ..++.+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34578999886 35677777666642 2467899999999999999999998874 67888888
Q ss_pred hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 026258 100 SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATN 179 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~ 179 (241)
..+....... +. ....+.+|+|||++.+.. ....+..+..+++.... .+.+.+|++++
T Consensus 89 ~~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~~ii~~~~ 146 (242)
T 3bos_A 89 GIHASISTAL--------LE--GLEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVAE---QKRGSLIVSAS 146 (242)
T ss_dssp GGGGGSCGGG--------GT--TGGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHHH---HCSCEEEEEES
T ss_pred HHHHHHHHHH--------HH--hccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCCCeEEEEcC
Confidence 7765433211 11 113468999999999832 12234556666554321 12334666665
Q ss_pred CC-C---CCChhccCCCCcc--eEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 180 RP-D---VLDPALLRPGRLD--RKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 180 ~~-~---~l~~~l~~~~r~~--~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.. . .+.+.+.+ ||. ..+.+++|+.+++.++++.+++.... .++.+.+..+++.+.
T Consensus 147 ~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~ 207 (242)
T 3bos_A 147 ASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMA 207 (242)
T ss_dssp SCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTT
T ss_pred CCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcc
Confidence 43 2 34577777 775 78999999999999999988865433 567777777776654
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.72 E-value=9.2e-17 Score=130.97 Aligned_cols=182 Identities=21% Similarity=0.246 Sum_probs=116.9
Q ss_pred CccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEEechhhccc
Q 026258 29 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSAIIDK 105 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~---~~~~~v~~~~~~~~ 105 (241)
.+|++++|.++.++++.+.+... ...+.+++|+||||||||++++++++.+. .+++.++|..+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 47899999999999998877542 13356899999999999999999999874 68999999876321
Q ss_pred ccchHHHHHHHHHH---------------HHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC----
Q 026258 106 YIGESARLIREMFG---------------YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF---- 166 (241)
Q Consensus 106 ~~~~~~~~~~~~f~---------------~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---- 166 (241)
.. . ..+|+ .......++|+|||++.+ ....+..+..+++...-.
T Consensus 72 ~~---~---~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 72 LL---D---SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HH---H---HHHHCCC---------CCCCHHHHTTTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC
T ss_pred HH---H---HHhcCCcccccccccccccchhhhcCCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCC
Confidence 10 0 01111 111234579999999999 667788888888753210
Q ss_pred --CCCCCeEEEEEeCCC-------CCCChhccCCCCcce-EEEcCCCCH--HHHHHHHHHhHcC----ccCC--CCCCHH
Q 026258 167 --DQLGKVKMIMATNRP-------DVLDPALLRPGRLDR-KIEIPLPNE--QSRMEILKIHAAG----IAKH--GEIDYE 228 (241)
Q Consensus 167 --~~~~~~~vI~tt~~~-------~~l~~~l~~~~r~~~-~i~l~~p~~--~~r~~il~~~~~~----~~~~--~~~~~~ 228 (241)
....++++|++||.+ ..+.+.+.+ ||.. .+.+|+++. ++...+++.+++. .... ..++.+
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 112368899999874 246778887 8843 566666654 4555555544433 2222 256888
Q ss_pred HHHHHhhhccCC
Q 026258 229 AVVKLAEVSRRG 240 (241)
Q Consensus 229 ~l~~~~~~~~~~ 240 (241)
.+..+..+.+.|
T Consensus 213 a~~~L~~~~~~g 224 (265)
T 2bjv_A 213 ARETLLNYRWPG 224 (265)
T ss_dssp HHHHHHHSCCTT
T ss_pred HHHHHHhCCCCC
Confidence 888887776543
No 73
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.69 E-value=2.2e-15 Score=126.92 Aligned_cols=184 Identities=23% Similarity=0.305 Sum_probs=125.3
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII 103 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~ 103 (241)
....+.+|++.+|++.+++.+...+.... .-+ ....+++|+||||+||||+++++|+.++..+.........
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 44566789999999999998887764210 001 3446899999999999999999999998877665543332
Q ss_pred ccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC-------CC------CCC
Q 026258 104 DKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG-------FD------QLG 170 (241)
Q Consensus 104 ~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~-------~~------~~~ 170 (241)
. ...+...+. ......|+++||++.+. ...+..+...++.... .. .-+
T Consensus 89 ~------~~~l~~~~~--~~~~~~v~~iDE~~~l~-----------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 K------QGDMAAILT--SLERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp S------HHHHHHHHH--HCCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC---------------C
T ss_pred C------HHHHHHHHH--HccCCCEEEEcchhhcC-----------HHHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1 111222222 12346799999999982 3334444444332110 00 012
Q ss_pred CeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 171 KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 171 ~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
.+.++.+++.+..+++.+++ ||.....+++++.+++.++++...+.... .++.+.+..+++.+.
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~ 213 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSR 213 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTST
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcC
Confidence 46788888989999999999 99888999999999999999988765433 566777766666543
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.67 E-value=7.4e-16 Score=144.58 Aligned_cols=184 Identities=24% Similarity=0.370 Sum_probs=131.4
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCC----CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIK----PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID 104 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~ 104 (241)
..++|++++++.+...+... +.|+. +..+++|+||||||||++++++++.+ +.+++.++|+.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 56899999999999888643 22222 22589999999999999999999998 78999999987654
Q ss_pred cc-----c-------chHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC----
Q 026258 105 KY-----I-------GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ---- 168 (241)
Q Consensus 105 ~~-----~-------~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---- 168 (241)
.. . +... ...+...+....+++|+|||++.+ +...+..+.++++.-.-...
T Consensus 630 ~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~ 696 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRT 696 (854)
T ss_dssp SGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCC
T ss_pred hhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCE
Confidence 31 1 1111 112333344566789999999998 77888888888875421111
Q ss_pred --CCCeEEEEEeCCC--------------------------CCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCcc
Q 026258 169 --LGKVKMIMATNRP--------------------------DVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIA 220 (241)
Q Consensus 169 --~~~~~vI~tt~~~--------------------------~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~ 220 (241)
..++.+|+|||.. ..+.+.+.+ ||+..+.+++|+.++...|++.++....
T Consensus 697 vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 697 VDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp EECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1267799999862 245677777 9988888989999999999997776321
Q ss_pred -------CCCCCCHHHHHHHhhhcc
Q 026258 221 -------KHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 221 -------~~~~~~~~~l~~~~~~~~ 238 (241)
..-.++.+++..+++..+
T Consensus 775 ~~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 775 ARLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHHC
T ss_pred HHHHhCCceEEECHHHHHHHHHcCC
Confidence 112578888888888665
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.66 E-value=2e-16 Score=117.56 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=92.1
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccch
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGE 109 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~ 109 (241)
+++|.++.++++.+.+... ...+.+++|+||||||||++++++++.. +.+++ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5789999999999888632 1445689999999999999999999887 67888 999877543
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC-------
Q 026258 110 SARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD------- 182 (241)
Q Consensus 110 ~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~------- 182 (241)
......+..+ ..++|||||+|.+ +...+..+..++.. ...++++|++||.+-
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSCHHHHHHHS
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcCHHHHHHcC
Confidence 1112233333 4479999999999 67777777777742 223678999998641
Q ss_pred CCChhccCCCCcce-EEEcCCC
Q 026258 183 VLDPALLRPGRLDR-KIEIPLP 203 (241)
Q Consensus 183 ~l~~~l~~~~r~~~-~i~l~~p 203 (241)
.+.+.+.. |+.. .+.+|+.
T Consensus 125 ~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 125 HIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp CCCHHHHH--HHHHHEEECCCC
T ss_pred CCCHHHHH--HhcCCEEeCCCC
Confidence 34455544 4432 4666653
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.66 E-value=2.6e-16 Score=130.97 Aligned_cols=182 Identities=23% Similarity=0.248 Sum_probs=119.7
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIG 108 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~ 108 (241)
++++|.++.++.+.+.+... .....+++|+|+||||||++++++++.. +.+++.++|..+......
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35889999999998888642 1345789999999999999999999976 578999999876431110
Q ss_pred h---------HHH---HHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------CCCC
Q 026258 109 E---------SAR---LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------DQLG 170 (241)
Q Consensus 109 ~---------~~~---~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~~~~ 170 (241)
+ ... .....|.. ...++|||||++.+ ....+..+..+++...-. ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 0 000 00011222 23479999999999 667788888888754311 1123
Q ss_pred CeEEEEEeCCC-------CCCChhccCCCCcc-eEEEcCCCC--HHHHHHHHHHhHcCc----cC-CCCCCHHHHHHHhh
Q 026258 171 KVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPN--EQSRMEILKIHAAGI----AK-HGEIDYEAVVKLAE 235 (241)
Q Consensus 171 ~~~vI~tt~~~-------~~l~~~l~~~~r~~-~~i~l~~p~--~~~r~~il~~~~~~~----~~-~~~~~~~~l~~~~~ 235 (241)
++++|++||.. ..+.+.+.+ ||. ..+.+|++. .++...+++.+++.. .. ...++.+.+..+.+
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 68999999875 235666766 774 245566655 345555666554432 11 23578899999988
Q ss_pred hccCC
Q 026258 236 VSRRG 240 (241)
Q Consensus 236 ~~~~~ 240 (241)
+.|+|
T Consensus 215 ~~wpG 219 (304)
T 1ojl_A 215 YDWPG 219 (304)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 88765
No 77
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.65 E-value=5.8e-15 Score=124.37 Aligned_cols=161 Identities=17% Similarity=0.249 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 026258 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN---------------------- 93 (241)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~---------------------- 93 (241)
-+++.++.+...+.. + ..++.++|+||+|+|||++++++++.+...
T Consensus 6 w~~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 346677777777642 1 345569999999999999999999988532
Q ss_pred --eEEEechhhcccccchHHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC
Q 026258 94 --FLKVVSSAIIDKYIGESARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 167 (241)
Q Consensus 94 --~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 167 (241)
+..++...- +. ......++.+...+.. ..+.|++|||+|.+ ....++.+...+++
T Consensus 74 ~d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lEe----- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLEE----- 134 (334)
T ss_dssp TTEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHTS-----
T ss_pred CCEEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhcC-----
Confidence 233322100 00 0112234455544432 34689999999999 45555555555542
Q ss_pred CCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 168 QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 168 ~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
+.+++.+|++|++++.+.+.+++ |+ ..+.|++|+.++..++++... .++.+.+..+++.+
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s 194 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLS 194 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHT
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHc
Confidence 34578999999999999999999 88 579999999999999988765 34555555555544
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.64 E-value=1.4e-16 Score=118.17 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=92.4
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHH
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESAR 112 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~ 112 (241)
+++|.++.++++.+.+... ...+.+++|+||||||||++++++++... +++.++|..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 4789999999999988642 13456899999999999999999998887 89999988764322
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CCC----Chh
Q 026258 113 LIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP-DVL----DPA 187 (241)
Q Consensus 113 ~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~-~~l----~~~ 187 (241)
....+.. ...++|||||+|.+ ....+..+.++++... ..++++|++||.+ +.+ .+.
T Consensus 67 -~~~~~~~---a~~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQK---AEGGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHH---TTTSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHh---CCCCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHH
Confidence 2333433 34579999999999 6677888888887653 2368899998754 332 233
Q ss_pred ccCCCCc-ceEEEcCCC
Q 026258 188 LLRPGRL-DRKIEIPLP 203 (241)
Q Consensus 188 l~~~~r~-~~~i~l~~p 203 (241)
+.. |+ ...+.+|+.
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 333 43 235666654
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.60 E-value=2.8e-15 Score=132.09 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=100.3
Q ss_pred cccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEechh-----hccc
Q 026258 33 AVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSA-----IIDK 105 (241)
Q Consensus 33 ~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~~-----~~~~ 105 (241)
.++|.++.++.+..++.. +.+++|+||||||||++++++++.++. ++..+.+.. +.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 478999999888877642 358999999999999999999998843 444444432 1111
Q ss_pred ccchHHHHHHHHHHHHHh---CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC----C-CCCCCeEEEEE
Q 026258 106 YIGESARLIREMFGYARD---HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG----F-DQLGKVKMIMA 177 (241)
Q Consensus 106 ~~~~~~~~~~~~f~~~~~---~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~----~-~~~~~~~vI~t 177 (241)
..+..... ...|..+.. ..++||||||++.+ ++..+..+...+++..- . ...+..++|++
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 11110000 111111111 13569999999988 77788888888875321 0 11122346788
Q ss_pred eCCCCC---CChhccCCCCcceEEEcCCCCH-HHHHHHHHHhHc
Q 026258 178 TNRPDV---LDPALLRPGRLDRKIEIPLPNE-QSRMEILKIHAA 217 (241)
Q Consensus 178 t~~~~~---l~~~l~~~~r~~~~i~l~~p~~-~~r~~il~~~~~ 217 (241)
||.... ..+++.+ ||...+.+++|+. +++..|++.+..
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 886322 4458888 9988899999987 778899886553
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.4e-14 Score=120.27 Aligned_cols=142 Identities=13% Similarity=0.189 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCceEEEechhhcccccch
Q 026258 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI------DANFLKVVSSAIIDKYIGE 109 (241)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l------~~~~~~v~~~~~~~~~~~~ 109 (241)
|++++++.+...+.. ...++++|+||+|+|||++++++++.. ...+..++..+- . .
T Consensus 1 g~~~~~~~L~~~i~~-------------~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~--~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-------------SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---N--I 62 (305)
T ss_dssp ---CHHHHHHHHHHT-------------CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---C--B
T ss_pred ChHHHHHHHHHHHHC-------------CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---C--C
Confidence 677888888888753 225689999999999999999999863 346666664321 1 1
Q ss_pred HHHHHHHHHHHHHh----CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 026258 110 SARLIREMFGYARD----HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLD 185 (241)
Q Consensus 110 ~~~~~~~~f~~~~~----~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~ 185 (241)
....++.+...+.. ....|++|||+|.+ ....++.+...+++ +.+++.+|++|++++.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 12223444444433 23579999999999 56666777777663 335889999999999999
Q ss_pred hhccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 186 PALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 186 ~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
+++++ | .+.|++|+.++..+.++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 68999999999998888765
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.51 E-value=4.2e-14 Score=127.99 Aligned_cols=187 Identities=19% Similarity=0.283 Sum_probs=121.4
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce---EEEech
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF---LKVVSS 100 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~---~~v~~~ 100 (241)
.+.++..|++++|++.+++.+...+. .+.+++|+|||||||||+++++++.+.... +.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 46788999999999999999888774 346899999999999999999999874321 122111
Q ss_pred hhcc------ccc-chH-------------------------------------------------HHHHHHHHH-----
Q 026258 101 AIID------KYI-GES-------------------------------------------------ARLIREMFG----- 119 (241)
Q Consensus 101 ~~~~------~~~-~~~-------------------------------------------------~~~~~~~f~----- 119 (241)
.... ... +.. ......+|+
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 1000 000 000 000111121
Q ss_pred ------------------HHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC---------------
Q 026258 120 ------------------YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--------------- 166 (241)
Q Consensus 120 ------------------~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--------------- 166 (241)
......+++|||||++.+ ++..+..+.+.++.-.-.
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 112245679999999998 678888999888753211
Q ss_pred -CCCCCeEEEEEeCCC--CCCChhccCCCCcc---eEEEcCCC---CHHHHHHHHHHhHcCcc---CCCCCCHHHHHHHh
Q 026258 167 -DQLGKVKMIMATNRP--DVLDPALLRPGRLD---RKIEIPLP---NEQSRMEILKIHAAGIA---KHGEIDYEAVVKLA 234 (241)
Q Consensus 167 -~~~~~~~vI~tt~~~--~~l~~~l~~~~r~~---~~i~l~~p---~~~~r~~il~~~~~~~~---~~~~~~~~~l~~~~ 234 (241)
....++++|++||.. +.+++++++ ||. ..+.++.. ..+....+++...+... ....++.+.+..+.
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li 324 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIV 324 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHH
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence 111268899999976 579999999 885 45565432 45566666665444332 22367888888888
Q ss_pred hhcc
Q 026258 235 EVSR 238 (241)
Q Consensus 235 ~~~~ 238 (241)
+++.
T Consensus 325 ~~~~ 328 (604)
T 3k1j_A 325 REAQ 328 (604)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.51 E-value=6.1e-14 Score=107.63 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=83.3
Q ss_pred CCCCccccccc----hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEE
Q 026258 26 PGNVSYSAVGG----LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKV 97 (241)
Q Consensus 26 ~~~~~~~~l~g----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v 97 (241)
..+.+|++.++ +.++++.+.+++. ++.+..+.+++|+||+||||||+++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34567888775 5556666666665 3334457789999999999999999999887 5566667
Q ss_pred echhhcccccchHHHH-HHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 026258 98 VSSAIIDKYIGESARL-IREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM 176 (241)
Q Consensus 98 ~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ 176 (241)
+...+........... ....... ...+.+|+|||++... .+......+..+++.... .+..+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~~----~~~~ii~ 138 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSER---------LSDWQRELISYIITYRYN----NLKSTII 138 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHHH----TTCEEEE
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHHH----cCCCEEE
Confidence 6665543221111000 0011111 2357899999997431 256666777777776532 2567888
Q ss_pred EeCCCC
Q 026258 177 ATNRPD 182 (241)
Q Consensus 177 tt~~~~ 182 (241)
|||.+.
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 888754
No 83
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.48 E-value=5.1e-13 Score=114.98 Aligned_cols=193 Identities=13% Similarity=0.181 Sum_probs=117.5
Q ss_pred ccccccchHHHHHHHHHHh-hcccCChHHHHhcCC-CCCceEEE--EcCCCChHHHHHHHHHHHh---------CCceEE
Q 026258 30 SYSAVGGLSDQIRELRESI-ELPLMNPELFLRVGI-KPPKGVLL--YGPPGTGKTLLARAIASNI---------DANFLK 96 (241)
Q Consensus 30 ~~~~l~g~~~~~~~l~~~l-~~~~~~~~~~~~~~~-~~~~~vll--~G~~GsGKTtl~~~la~~l---------~~~~~~ 96 (241)
..+.++|.++.++++.+.+ ..... +. ..+.+++| +||+|+|||++++.+++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3477999999999999988 53210 10 23567999 9999999999999999877 446777
Q ss_pred Eechhhcccc----------------cc-hHHHHHHHHHHHHH-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHH
Q 026258 97 VVSSAIIDKY----------------IG-ESARLIREMFGYAR-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 158 (241)
Q Consensus 97 v~~~~~~~~~----------------~~-~~~~~~~~~f~~~~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ 158 (241)
++|....+.. .+ .....+..+..... ...+.+|+|||++.+.... ..+......+..
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-----~~~~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-----RIAAEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----TSCHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----CcchHHHHHHHH
Confidence 8764321100 00 01112222222222 2457899999999984210 012233344444
Q ss_pred HHHHhcCCCC-CCCeEEEEEeCCCC---CCC---hhccCCCCcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHH
Q 026258 159 LLNQLDGFDQ-LGKVKMIMATNRPD---VLD---PALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVV 231 (241)
Q Consensus 159 ll~~~~~~~~-~~~~~vI~tt~~~~---~l~---~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~ 231 (241)
++..... .. ..++.+|++++.++ .+. +.+.+ ++...+.+++++.++..++++.++........++.+.+.
T Consensus 167 ~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 167 VHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp HHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 4443320 01 14788898887654 233 44556 565669999999999999998776543322345666666
Q ss_pred HHhhhcc
Q 026258 232 KLAEVSR 238 (241)
Q Consensus 232 ~~~~~~~ 238 (241)
.+.+.+.
T Consensus 244 ~i~~~~~ 250 (412)
T 1w5s_A 244 LISDVYG 250 (412)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 6665554
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=3.7e-14 Score=127.88 Aligned_cols=171 Identities=19% Similarity=0.157 Sum_probs=103.0
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe----chhhccccc
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV----SSAIIDKYI 107 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~----~~~~~~~~~ 107 (241)
..++|++++++.+...+..-.. .......+....++||+||||||||++++++++.+....+... +.++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~--~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVP--KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCC--EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCCc--ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3588999988887554432100 0000011122338999999999999999999998866544322 122211111
Q ss_pred chH-HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcC--------CCCCCCeEEEEEe
Q 026258 108 GES-ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--------FDQLGKVKMIMAT 178 (241)
Q Consensus 108 ~~~-~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--------~~~~~~~~vI~tt 178 (241)
... .......-+.......++++|||+|.+ +...+..+.+.++...- ...+.++.+|+||
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaat 441 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAG 441 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEE
T ss_pred eccccccccccCCeeEecCCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEc
Confidence 000 000000000011123479999999998 66677888888874321 0112368899999
Q ss_pred CCCC-------------CCChhccCCCCcce-EEEcCCCCHHHHHHHHHHhHcC
Q 026258 179 NRPD-------------VLDPALLRPGRLDR-KIEIPLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 179 ~~~~-------------~l~~~l~~~~r~~~-~i~l~~p~~~~r~~il~~~~~~ 218 (241)
|... .+++++.+ ||+. .+..+.|+.+ ...|.+..+..
T Consensus 442 Np~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 442 NPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9875 78999999 9975 4556778877 88888776654
No 85
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.39 E-value=6.5e-11 Score=99.36 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=108.8
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc--
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII-- 103 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~-- 103 (241)
.++..-..++|.++..++|.+.+.. +..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~ 68 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAE 68 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccc
Confidence 3455567799999999999998752 25899999999999999999999875 6666654431
Q ss_pred ----c---------ccc-------------------------chHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCC
Q 026258 104 ----D---------KYI-------------------------GESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145 (241)
Q Consensus 104 ----~---------~~~-------------------------~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~ 145 (241)
. ... ......+..+...+....|.+|+|||++.+....
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~---- 144 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG---- 144 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----
Confidence 0 000 0111112222222222238899999999983210
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---------CCChhccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 146 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD---------VLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 146 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~---------~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
..........+..+++.. .++.+|++++... .....+.. |+...+.+++.+.++-.++++..+
T Consensus 145 ~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~~--~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 145 SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLYG--RIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTTT--CCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCcccc--CccceeeCCCCCHHHHHHHHHHHH
Confidence 001234445555555432 2688888876431 11222332 555689999999999999998776
Q ss_pred cCccCCCCCCHHHHHHHh
Q 026258 217 AGIAKHGEIDYEAVVKLA 234 (241)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~ 234 (241)
..... .++.+.+..+.
T Consensus 217 ~~~~~--~~~~~~~~~i~ 232 (350)
T 2qen_A 217 REVNL--DVPENEIEEAV 232 (350)
T ss_dssp HTTTC--CCCHHHHHHHH
T ss_pred HHcCC--CCCHHHHHHHH
Confidence 54332 23444444433
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.33 E-value=1.3e-11 Score=105.80 Aligned_cols=180 Identities=24% Similarity=0.299 Sum_probs=117.9
Q ss_pred cccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccccc
Q 026258 31 YSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI 107 (241)
Q Consensus 31 ~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~ 107 (241)
+..++|.+...+++.+.+.. .. ....+++|+|++||||+++++++.... +.+|+.++|..+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~a-~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~- 203 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------IS-CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI- 203 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------HT-TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHH-
T ss_pred chhhhhccHHhhHHHHHHHH----------hc-CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHH-
Confidence 45677777777777776653 11 345679999999999999999999876 4689999998764321
Q ss_pred chHHHHHHHHHHHH---------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCC------
Q 026258 108 GESARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF------ 166 (241)
Q Consensus 108 ~~~~~~~~~~f~~~---------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------ 166 (241)
.-..+|++. .....++|||||++.+ +...|..+.++++...-.
T Consensus 204 -----~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 204 -----FEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp -----HHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCS
T ss_pred -----HHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 112344322 1234579999999999 888999999999864311
Q ss_pred CCCCCeEEEEEeCCC-------CCCChhccCCCCcc-eEEEcCCCCH--HHHHHHHHHhHcCc----cCC-CCCCHHHHH
Q 026258 167 DQLGKVKMIMATNRP-------DVLDPALLRPGRLD-RKIEIPLPNE--QSRMEILKIHAAGI----AKH-GEIDYEAVV 231 (241)
Q Consensus 167 ~~~~~~~vI~tt~~~-------~~l~~~l~~~~r~~-~~i~l~~p~~--~~r~~il~~~~~~~----~~~-~~~~~~~l~ 231 (241)
...-++++|++||.. ..+.+.+.. |+. ..+.+|+... +....+.+.+++.. ... ..++.+.+.
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 345 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE 345 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 111268899999863 133444443 442 2455555432 44445555544332 222 347889999
Q ss_pred HHhhhccCC
Q 026258 232 KLAEVSRRG 240 (241)
Q Consensus 232 ~~~~~~~~~ 240 (241)
.+..+.|+|
T Consensus 346 ~l~~~~wpG 354 (387)
T 1ny5_A 346 LLLSYPWYG 354 (387)
T ss_dssp HHHHSCCTT
T ss_pred HHHhCCCCc
Confidence 999988876
No 87
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=2.7e-12 Score=95.54 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR 141 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~ 141 (241)
++..++|+||+|+|||||++++++.+ +...++++...+... .....+.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~---- 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL---- 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc----
Confidence 46789999999999999999999988 556777777665432 11235789999999886
Q ss_pred CCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCC--hhccCCCCcceEE
Q 026258 142 FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR-PDVLD--PALLRPGRLDRKI 198 (241)
Q Consensus 142 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~-~~~l~--~~l~~~~r~~~~i 198 (241)
....+..+..+++.+... +..++|+|++. +..+. +.+.+ |+..-.
T Consensus 96 -------~~~~~~~l~~li~~~~~~---g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 96 -------GNEEQALLFSIFNRFRNS---GKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp -------CSHHHHHHHHHHHHHHHH---TCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred -------ChHHHHHHHHHHHHHHHc---CCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 222266677777655321 12236777774 44332 77777 775533
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=1.8e-10 Score=96.83 Aligned_cols=178 Identities=15% Similarity=0.170 Sum_probs=109.0
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhc--
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAII-- 103 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~-- 103 (241)
.+......++|.++..+.|.+ +. . ..++|+||+|+|||+|++.+++..+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~--------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LR--------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 69 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TC--------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred CCCCCHHHhcChHHHHHHHHH-hc--------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccc
Confidence 344466789999999999988 64 1 4899999999999999999999987777777765430
Q ss_pred ---c--cccchH---------------------------------------HHHHHHHHHHHHhC--CCeEEEEcCcccc
Q 026258 104 ---D--KYIGES---------------------------------------ARLIREMFGYARDH--QPCIIFMDEIDAI 137 (241)
Q Consensus 104 ---~--~~~~~~---------------------------------------~~~~~~~f~~~~~~--~~~vl~lDe~d~l 137 (241)
+ ...... ...+..++...... .|.+|+|||++.+
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~ 149 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHh
Confidence 0 000000 01122333333322 3789999999998
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---------CCChhccCCCCcceEEEcCCCCHHHH
Q 026258 138 GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD---------VLDPALLRPGRLDRKIEIPLPNEQSR 208 (241)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~---------~l~~~l~~~~r~~~~i~l~~p~~~~r 208 (241)
.... +......+..+.+.. .++.+|++++... .....+.. |+...+.+++++.++.
T Consensus 150 ~~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~--r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 150 VKLR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFG--RAFSTVELKPFSREEA 214 (357)
T ss_dssp GGCT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTT--CCCEEEEECCCCHHHH
T ss_pred hccC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcccc--CccceeecCCCCHHHH
Confidence 4310 112233444444432 2678888887532 11122332 5557899999999999
Q ss_pred HHHHHHhHcCccCCCCCCHHHHHHHhhh
Q 026258 209 MEILKIHAAGIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 209 ~~il~~~~~~~~~~~~~~~~~l~~~~~~ 236 (241)
.++++..+.......+ +...+...+.+
T Consensus 215 ~~~l~~~~~~~~~~~~-~~~~i~~~t~G 241 (357)
T 2fna_A 215 IEFLRRGFQEADIDFK-DYEVVYEKIGG 241 (357)
T ss_dssp HHHHHHHHHHHTCCCC-CHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCCC-cHHHHHHHhCC
Confidence 9999876643222211 23555555544
No 89
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.26 E-value=4.8e-11 Score=101.64 Aligned_cols=179 Identities=23% Similarity=0.311 Sum_probs=119.0
Q ss_pred ccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--eEEEechhhcccccch
Q 026258 32 SAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN--FLKVVSSAIIDKYIGE 109 (241)
Q Consensus 32 ~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~--~~~v~~~~~~~~~~~~ 109 (241)
..++|.+....++.+.+... . .....++++|++||||+++++++....+.. |+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a-~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~-- 195 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------A-KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELA-- 195 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------H-TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTH--
T ss_pred ccccccchHHHHHHhhhhhh----------h-ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHH--
Confidence 45778877777776666421 1 334579999999999999999999877443 99999998743221
Q ss_pred HHHHHHHHHHHH---------------HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCC--C----
Q 026258 110 SARLIREMFGYA---------------RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD--Q---- 168 (241)
Q Consensus 110 ~~~~~~~~f~~~---------------~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--~---- 168 (241)
+ ..+|++. .....+.|||||++.+ +...|..+.++++.-.-.. .
T Consensus 196 -~---~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 196 -E---SELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp -H---HHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBE
T ss_pred -H---HHhcCccccccCCcccccCChHhhcCCCeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcce
Confidence 1 1233221 1234579999999999 8889999999998643111 1
Q ss_pred CCCeEEEEEeCCC-------CCCChhccCCCCcce-EEEcCCCCH--HHHHHHHHHhHcCc----cCC-CCCCHHHHHHH
Q 026258 169 LGKVKMIMATNRP-------DVLDPALLRPGRLDR-KIEIPLPNE--QSRMEILKIHAAGI----AKH-GEIDYEAVVKL 233 (241)
Q Consensus 169 ~~~~~vI~tt~~~-------~~l~~~l~~~~r~~~-~i~l~~p~~--~~r~~il~~~~~~~----~~~-~~~~~~~l~~~ 233 (241)
.-.+++|++||.. ..+.+.+.. |+.. .+.+|+... +....+++.++++. ... ..++.+++..+
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 1168899999853 134444544 5533 466776655 55556666555442 222 35789999999
Q ss_pred hhhccCC
Q 026258 234 AEVSRRG 240 (241)
Q Consensus 234 ~~~~~~~ 240 (241)
..+.|+|
T Consensus 339 ~~~~wpG 345 (368)
T 3dzd_A 339 MKQEWKG 345 (368)
T ss_dssp HTCCCTT
T ss_pred HhCCCCc
Confidence 9999876
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.24 E-value=1.4e-11 Score=120.80 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=98.9
Q ss_pred CCCccccccchHHHHHHHHHHhhcccCC----------hHHHHh------cC------------CCCCceEEEEcCCCCh
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLMN----------PELFLR------VG------------IKPPKGVLLYGPPGTG 78 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~~----------~~~~~~------~~------------~~~~~~vll~G~~GsG 78 (241)
+..+|+++.|+++.++.+.+.+.+++.. ++.+.. .| +..++.++++||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4489999999999999999999988833 334444 22 3456669999999999
Q ss_pred HHHHHHHHHHHh---CCceEEEechhhc------------ccccch----HHHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 79 KTLLARAIASNI---DANFLKVVSSAII------------DKYIGE----SARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 79 KTtl~~~la~~l---~~~~~~v~~~~~~------------~~~~~~----~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
||+|+++++.+. +.+.++++..... +.+.++ .+..++.+|..++...|+++++|+++.+++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999766 5566666655533 333444 788888999989999999999999999987
Q ss_pred CCCC---CCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 026258 140 RRFS---EGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNR 180 (241)
Q Consensus 140 ~~~~---~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~ 180 (241)
.... .......-..+.+.+++.++.......++.|| +||.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 7321 11111122334466666666543333367676 5554
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.20 E-value=4.8e-11 Score=121.49 Aligned_cols=139 Identities=21% Similarity=0.343 Sum_probs=92.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCceEEEechhhcccccchHHHHHHHHHHHH----H-----------hCCCeE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVVSSAIIDKYIGESARLIREMFGYA----R-----------DHQPCI 128 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~----~-----------~~~~~v 128 (241)
.+.++||+||||||||++++.+.... +..+..++++...+. ..+...+... . ..++.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 35799999999999999995555444 567777776655321 1122222221 0 123469
Q ss_pred EEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCC-C-------CCeEEEEEeCCCC-----CCChhccCCCCcc
Q 026258 129 IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQ-L-------GKVKMIMATNRPD-----VLDPALLRPGRLD 195 (241)
Q Consensus 129 l~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~-------~~~~vI~tt~~~~-----~l~~~l~~~~r~~ 195 (241)
+||||++....... ........+.++++. .+... . .++.+|+|+|.+. .+++++.| ||
T Consensus 1340 lFiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 99999987532211 122345566666642 22111 1 2588999999984 79999999 89
Q ss_pred eEEEcCCCCHHHHHHHHHHhHcC
Q 026258 196 RKIEIPLPNEQSRMEILKIHAAG 218 (241)
Q Consensus 196 ~~i~l~~p~~~~r~~il~~~~~~ 218 (241)
..+.++.|+.+++..|+..+++.
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999987754
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.19 E-value=3.8e-11 Score=93.53 Aligned_cols=99 Identities=24% Similarity=0.266 Sum_probs=60.1
Q ss_pred CCccccccchH----HHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEech
Q 026258 28 NVSYSAVGGLS----DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (241)
Q Consensus 28 ~~~~~~l~g~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~ 100 (241)
+.+|+++++.+ ++++.+.+++..+. ....+.+++|+||+|||||++++++++.+ +..++.+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYE---------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCC---------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhh---------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 55788887644 34445555544210 00122789999999999999999999988 5678888877
Q ss_pred hhcccccchHH-HHHHHHHHHHHhCCCeEEEEcCcccc
Q 026258 101 AIIDKYIGESA-RLIREMFGYARDHQPCIIFMDEIDAI 137 (241)
Q Consensus 101 ~~~~~~~~~~~-~~~~~~f~~~~~~~~~vl~lDe~d~l 137 (241)
.+......... ......+..... +.+|+|||++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 65432211100 001122222222 359999999765
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.04 E-value=1.4e-10 Score=96.37 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=57.9
Q ss_pred CccccccchH----HHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CceEEEech
Q 026258 29 VSYSAVGGLS----DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSS 100 (241)
Q Consensus 29 ~~~~~l~g~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~----~~~~~v~~~ 100 (241)
.+|+++++.. .++..+.+++..+ +-..+.+++|+||||||||+|++++++.+. ..++.+.++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 6888887533 3444455555421 111357899999999999999999998664 677777777
Q ss_pred hhcccccchH-HHHHHHHHHHHHhCCCeEEEEcCcccc
Q 026258 101 AIIDKYIGES-ARLIREMFGYARDHQPCIIFMDEIDAI 137 (241)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~f~~~~~~~~~vl~lDe~d~l 137 (241)
.+........ .......+.... ..++|+|||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 6543221110 001111122222 3469999999665
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.02 E-value=3.2e-09 Score=108.37 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=94.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG 145 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~ 145 (241)
+.+.++.||+|||||++++.+|+.+|.+++.++|....+. ..+..+|.-+... .+++++||++++
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhc--------
Confidence 4679999999999999999999999999999999876532 2234555444443 379999999998
Q ss_pred CCccHHHHHHHHHHHHHhc---------------CCCCCCCeEEEEEeCC----CCCCChhccCCCCcceEEEcCCCCHH
Q 026258 146 TSADREIQRTLMELLNQLD---------------GFDQLGKVKMIMATNR----PDVLDPALLRPGRLDRKIEIPLPNEQ 206 (241)
Q Consensus 146 ~~~~~~~~~~l~~ll~~~~---------------~~~~~~~~~vI~tt~~----~~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (241)
+.+....+.+.+..+. .+...+++.+++|.|. ...+++.+++ || ..+.+..|+.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 6666666644443211 1122346778888884 3579999998 89 77999999999
Q ss_pred HHHHHH
Q 026258 207 SRMEIL 212 (241)
Q Consensus 207 ~r~~il 212 (241)
...+|+
T Consensus 784 ~i~ei~ 789 (2695)
T 4akg_A 784 TIAEMI 789 (2695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 95
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.01 E-value=3.6e-09 Score=80.85 Aligned_cols=122 Identities=17% Similarity=0.278 Sum_probs=70.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEechhh---------------------------------cccccchHHHHH
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI---------------------------------IDKYIGESARLI 114 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~---------------------------------~~~~~~~~~~~~ 114 (241)
.+.|.||+|||||||++.++..++..+........ ........+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 58899999999999999999988644432221110 111122233333
Q ss_pred HHH--HHHH-----HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CC
Q 026258 115 REM--FGYA-----RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV--LD 185 (241)
Q Consensus 115 ~~~--f~~~-----~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~--l~ 185 (241)
++. +..+ ....|.++++||++-. ...+......+..++.. .+..+|++++..+. +-
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~--------~~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKM--------ELFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTT--------GGGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCc--------ccCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchHH
Confidence 333 3332 4678999999996433 22356666666666643 24557777753322 22
Q ss_pred hhccCCCCc-ceEEEcCCCCHH
Q 026258 186 PALLRPGRL-DRKIEIPLPNEQ 206 (241)
Q Consensus 186 ~~l~~~~r~-~~~i~l~~p~~~ 206 (241)
..+.+ |- ...+.+...+.+
T Consensus 147 ~~i~~--r~~~~i~~~~~~~r~ 166 (178)
T 1ye8_A 147 KEIRR--LPGAVLIELTPENRD 166 (178)
T ss_dssp HHHHT--CTTCEEEECCTTTTT
T ss_pred HHHHh--cCCcEEEEecCcCHH
Confidence 34555 42 245677655543
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.98 E-value=9.7e-10 Score=85.13 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=62.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCC
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRF 142 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~ 142 (241)
+.+.++++|+||||||||+++.++++.+...++.+.... +. |.........+++|||++.-.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~------------f~l~~l~~~kIiiLDEad~~~---- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH------------FWLEPLTDTKVAMLDDATTTC---- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC------------GGGGGGTTCSSEEEEEECHHH----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch------------hhhcccCCCCEEEEECCCchh----
Confidence 344568999999999999999999999865543321110 00 100011123599999986431
Q ss_pred CCCCCccHHHHHHHHHHHHHh----cCCCCC----CCeEEEEEeCCC---CCCChhccCCCCcceEEEcC
Q 026258 143 SEGTSADREIQRTLMELLNQL----DGFDQL----GKVKMIMATNRP---DVLDPALLRPGRLDRKIEIP 201 (241)
Q Consensus 143 ~~~~~~~~~~~~~l~~ll~~~----~~~~~~----~~~~vI~tt~~~---~~l~~~l~~~~r~~~~i~l~ 201 (241)
.......+..+++.. +..++. ....+|+|||.. +..-+.+.+ |+ .++.++
T Consensus 117 ------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~ 177 (212)
T 1tue_A 117 ------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFP 177 (212)
T ss_dssp ------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECC
T ss_pred ------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcC
Confidence 122233444555442 111221 135688999874 222346777 77 456665
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.97 E-value=1.5e-09 Score=89.86 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=49.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEec--hhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS--SAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~--~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
+.++..++|+||||||||+|+..++...+..+.+++. .+..+.+....+..+..+........ +|+||+++.+..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 3455678999999999999999999875444333333 22222222344555555555555544 999999999854
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.91 E-value=2.1e-09 Score=83.57 Aligned_cols=127 Identities=19% Similarity=0.194 Sum_probs=77.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------C-CceEEEechhhccccc----------ch-----HHHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI--------D-ANFLKVVSSAIIDKYI----------GE-----SARLIREMFGYAR 122 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l--------~-~~~~~v~~~~~~~~~~----------~~-----~~~~~~~~f~~~~ 122 (241)
...+++|+||||||+++...+... + .+++..++.++..... .. ....+..++..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 478999999999999988865432 3 5565555554432111 00 011122221111
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL 202 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~ 202 (241)
.....+|+|||++.++..+... .+ . .+++..+.. .+.....+|++++++..++..++. |+...+.++.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~-~e-~-------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAG-SK-I-------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTT-CC-C-------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred ccCceEEEEEChhhhccCcccc-ch-h-------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 2336799999999997543111 11 1 123334432 334477899999999999999998 9988888876
Q ss_pred CCHH
Q 026258 203 PNEQ 206 (241)
Q Consensus 203 p~~~ 206 (241)
|...
T Consensus 153 ~~~~ 156 (199)
T 2r2a_A 153 NKMG 156 (199)
T ss_dssp CSSC
T ss_pred cccC
Confidence 5443
No 99
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.90 E-value=2.9e-09 Score=92.09 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=87.3
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCceEEEech----hhcccccc
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAI-ASNIDANFLKVVSS----AIIDKYIG 108 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~l-a~~l~~~~~~v~~~----~~~~~~~~ 108 (241)
+.|++.+++.+.-.+..-... .....|+||.|+||+ ||++++++ ++.+....+..... ++.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 788888888777776432110 111238999999999 99999999 66554333221110 01000000
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhc----CCCCCCCeEEEEEeCCCC--
Q 026258 109 ESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLD----GFDQLGKVKMIMATNRPD-- 182 (241)
Q Consensus 109 ~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~~~~~vI~tt~~~~-- 182 (241)
. .. ....-+.......+++++||++.+ +...+..+.+.+++-. +..-..++.||+|+|..+
T Consensus 286 ~-tG-~~~~~G~l~LAdgGvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~y 352 (506)
T 3f8t_A 286 D-RG-WALRAGAAVLADGGILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQW 352 (506)
T ss_dssp S-SS-EEEEECHHHHTTTSEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--
T ss_pred C-CC-cccCCCeeEEcCCCeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccccc
Confidence 0 00 000001111234579999999999 8888999999988632 111123688999999764
Q ss_pred ---------CCChhccCCCCcceEE-EcCCCCHHH
Q 026258 183 ---------VLDPALLRPGRLDRKI-EIPLPNEQS 207 (241)
Q Consensus 183 ---------~l~~~l~~~~r~~~~i-~l~~p~~~~ 207 (241)
.+++++++ ||+..+ .++.|+.+.
T Consensus 353 d~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 353 PSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred CCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 78889999 997744 457776554
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.74 E-value=1.3e-07 Score=97.48 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=93.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGT 146 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~ 146 (241)
.+..+.||+|||||.+++.+|+.+|.+++.++|....+. ..+.++|.-+.+. .+..++|||+++
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 467899999999999999999999999999999876432 2233444444433 479999999999
Q ss_pred CccHHHHHHHHHHHHHh----------------cCCCCCCCeEEEEEeCC----CCCCChhccCCCCcceEEEcCCCCHH
Q 026258 147 SADREIQRTLMELLNQL----------------DGFDQLGKVKMIMATNR----PDVLDPALLRPGRLDRKIEIPLPNEQ 206 (241)
Q Consensus 147 ~~~~~~~~~l~~ll~~~----------------~~~~~~~~~~vI~tt~~----~~~l~~~l~~~~r~~~~i~l~~p~~~ 206 (241)
+.+....+.+.+..+ ..+.-++++.+++|.|. ..++++.++. || ..+.+..|+.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 666666655544421 01223347888888884 3579999999 89 77999999999
Q ss_pred HHHHHHH
Q 026258 207 SRMEILK 213 (241)
Q Consensus 207 ~r~~il~ 213 (241)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888753
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.73 E-value=4.5e-08 Score=100.88 Aligned_cols=140 Identities=19% Similarity=0.318 Sum_probs=89.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCceEEEechhhcccccchHHHHHHHHHHH----HHh------------CCC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVVSSAIIDKYIGESARLIREMFGY----ARD------------HQP 126 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~----~~~------------~~~ 126 (241)
..+.++||+||+|||||+++......+ +..++.++++...+ ...+...+.. .+. .+.
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 345789999999999998876655444 55667777665432 1122222221 010 122
Q ss_pred eEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCC-------CCeEEEEEeCCCC-----CCChhccCCCCc
Q 026258 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL-------GKVKMIMATNRPD-----VLDPALLRPGRL 194 (241)
Q Consensus 127 ~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-------~~~~vI~tt~~~~-----~l~~~l~~~~r~ 194 (241)
.|+||||++.--... -........+.++++...-+.+. .++.+|+|+|.+. .+++++.+ ||
T Consensus 1376 ~VlFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F 1448 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA 1448 (3245)
T ss_dssp EEEEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC
T ss_pred EEEEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc
Confidence 489999998752211 11223556666777642211111 2688999999873 58999999 88
Q ss_pred ceEEEcCCCCHHHHHHHHHHhHc
Q 026258 195 DRKIEIPLPNEQSRMEILKIHAA 217 (241)
Q Consensus 195 ~~~i~l~~p~~~~r~~il~~~~~ 217 (241)
..+.++.|+.++...|+..++.
T Consensus 1449 -~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 -PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -CEEECCCCCHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHH
Confidence 5699999999999999776543
No 102
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.66 E-value=4.3e-08 Score=79.16 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFS 143 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~ 143 (241)
.+.++++|+||||||||++++++|+.+.. +..++.. +.. ..+. ......+++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~---~~~---------f~l~--~~~~k~i~l~Ee~~~~------ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWT---NEN---------FPFN--DCVDKMVIWWEEGKMT------ 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTT---CSS---------CTTG--GGSSCSEEEECSCCEE------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecc---ccc---------cccc--cccccEEEEeccccch------
Confidence 33568999999999999999999987543 2222221 100 0111 1123357777776555
Q ss_pred CCCCccHHHHHHHHHHHHH----hcCCCC----CCCeEEEEEeCC-C----------CCCChhccCCCCcceEEEcC---
Q 026258 144 EGTSADREIQRTLMELLNQ----LDGFDQ----LGKVKMIMATNR-P----------DVLDPALLRPGRLDRKIEIP--- 201 (241)
Q Consensus 144 ~~~~~~~~~~~~l~~ll~~----~~~~~~----~~~~~vI~tt~~-~----------~~l~~~l~~~~r~~~~i~l~--- 201 (241)
...+..+..++.. ++...+ .....+|+|||. + +...+.|++ |+ ..+.|+
T Consensus 161 ------~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~ 231 (267)
T 1u0j_A 161 ------AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRL 231 (267)
T ss_dssp ------TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCC
T ss_pred ------hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcC
Confidence 1122334445541 111111 125678889886 2 134467888 77 566776
Q ss_pred -----CCCHHHHHHHHHHh
Q 026258 202 -----LPNEQSRMEILKIH 215 (241)
Q Consensus 202 -----~p~~~~r~~il~~~ 215 (241)
..+.++-..+++..
T Consensus 232 p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 232 DHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp CTTSCCCCHHHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHHH
Confidence 56788888888743
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.65 E-value=1.4e-07 Score=79.20 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=95.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CC-c--eEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCccc-c
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DA-N--FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDA-I 137 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~-~--~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~-l 137 (241)
..+.++|+||.|.||++.++.+++.+ +. + ++.++ + . ......+..+-.........|++|||++. +
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~--~---~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID--P--N---TDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC--T--T---CCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec--C--C---CCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 34689999999999999999998866 21 2 22222 1 1 12222222222223345578999999988 6
Q ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC------CCChhccCCCCcceEEEcCCCCHHHHHHH
Q 026258 138 GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD------VLDPALLRPGRLDRKIEIPLPNEQSRMEI 211 (241)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~------~l~~~l~~~~r~~~~i~l~~p~~~~r~~i 211 (241)
....++.+...+++ +.+++.+|++++..+ .+.+.+.+ |+ ..+.+.+++.++....
T Consensus 90 -----------~~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 90 -----------NAAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp -----------CTTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred -----------ChHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 23344555555543 234677777776532 35567777 77 6789999999999988
Q ss_pred HHHhHcCccCCCCCCHHHHHHHhhhccC
Q 026258 212 LKIHAAGIAKHGEIDYEAVVKLAEVSRR 239 (241)
Q Consensus 212 l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (241)
++..++.... .++.+.+..+++.+.+
T Consensus 151 l~~~~~~~g~--~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 151 VAARAKQLNL--ELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHTTC--EECHHHHHHHHHSSTT
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHhch
Confidence 8888766544 5677777777766544
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.64 E-value=2.6e-07 Score=72.75 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=28.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
|+.++..++|.||+|+||||+++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677889999999999999999999654 34444443
No 105
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.63 E-value=2.3e-08 Score=81.60 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=37.5
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
....|.+|++|| +....+......+.+++..+.. . .+..+|++|++.+.+
T Consensus 158 L~~~P~lLlLDE----------Pts~LD~~~~~~i~~~l~~l~~--~-~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 158 LVMEPKVLILDE----------PTAGLDPMGVSEIMKLLVEMQK--E-LGITIIIATHDIDIV 207 (275)
T ss_dssp HTTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH--H-HCCEEEEEESCCSSG
T ss_pred HHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHHh--h-CCCEEEEEecCHHHH
Confidence 347899999999 5667788888888888877631 0 156799999987654
No 106
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.63 E-value=9.5e-08 Score=81.27 Aligned_cols=116 Identities=23% Similarity=0.314 Sum_probs=67.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhhcccccchHHHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
.+++.++..++|+||+|+||||+++++++..+..++.+..+.. . .....+.+. ...++++||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~----~~~~lg~~~--q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------R----LNFELGVAI--DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------T----HHHHHGGGT--TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------h----HHHHHHHhc--chhHHHHHHHHHHHH
Confidence 3477888899999999999999999999988776554332211 0 011122222 234678999998864
Q ss_pred C-CCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceE
Q 026258 140 R-RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRK 197 (241)
Q Consensus 140 ~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~ 197 (241)
. +.... . . ... ....+.+.+++ .+.+++++|.++.+ +.+++++++...
T Consensus 231 ~~r~l~~-~-~-~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~ 279 (377)
T 1svm_A 231 ESRDLPS-G-Q-GIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMN 279 (377)
T ss_dssp TTTTCCC-C-S-HHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEEC
T ss_pred HHhhccc-c-C-cch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChh
Confidence 1 11000 0 1 110 11122222322 45678888888877 567766665443
No 107
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.62 E-value=2.7e-08 Score=84.00 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=37.0
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
....|.+|++|| +++..++..+..+..++..+.. ..+..+|++|++.+
T Consensus 178 L~~~P~lLLlDE----------PTs~LD~~~~~~i~~lL~~l~~---~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 178 LASNPKVLLCDQ----------ATSALDPATTRSILELLKDINR---RLGLTILLITHEMD 225 (366)
T ss_dssp TTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---HSCCEEEEEESCHH
T ss_pred HhcCCCEEEEEC----------CCccCCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHH
Confidence 347899999999 5667788888888888887632 12678999999854
No 108
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.62 E-value=2.1e-08 Score=81.53 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 125 QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 125 ~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
.|.+|++|| +....+......+.+++..+.. .++..+|++||+.+
T Consensus 165 ~p~lLllDE----------Pts~LD~~~~~~i~~~l~~l~~---~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDE----------PTSALDLYHQQHTLRLLRQLTR---QEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECC----------CCSSCCHHHHHHHHHHHHHHHH---HSSEEEEEECSCHH
T ss_pred CCCEEEEeC----------ccccCCHHHHHHHHHHHHHHHH---cCCCEEEEEEcCHH
Confidence 899999999 5677788888888888877632 12578999999854
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.60 E-value=1.2e-07 Score=94.47 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=61.4
Q ss_pred HHHHhcC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccc----------------ccchHHHH
Q 026258 56 ELFLRVG---IKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARL 113 (241)
Q Consensus 56 ~~~~~~~---~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~----------------~~~~~~~~ 113 (241)
.+...+| +.++.+++|+||||||||+|+.+++.+. +..+.+++....... .+...+..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~ 1493 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 1493 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHH
Confidence 4444545 7889999999999999999999998766 556666665543211 12233455
Q ss_pred HHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 114 IREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 114 ~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
+..++..+....|++|+||+++.+..
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHHhcCCCCEEEEcChhHhcc
Confidence 66677777888999999999998865
No 110
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.59 E-value=2.4e-08 Score=84.85 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4456778889999999999999999999765
No 111
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.58 E-value=4.1e-08 Score=82.84 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4456778889999999999999999999765
No 112
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.57 E-value=7.2e-08 Score=77.85 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=35.6
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +....+......+..++..+.. .+..+|++|++.+
T Consensus 162 ~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~~----~g~tiiivtHd~~ 207 (256)
T 1vpl_A 162 MVNPRLAILDE----------PTSGLDVLNAREVRKILKQASQ----EGLTILVSSHNML 207 (256)
T ss_dssp TTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEEECCHH
T ss_pred HcCCCEEEEeC----------CccccCHHHHHHHHHHHHHHHh----CCCEEEEEcCCHH
Confidence 37789999999 5666788888888888887642 1567888998754
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.56 E-value=2.2e-07 Score=74.09 Aligned_cols=114 Identities=24% Similarity=0.232 Sum_probs=64.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHH--HH--hCCceEEEechhhcc----------cc---------------------
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIA--SN--IDANFLKVVSSAIID----------KY--------------------- 106 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la--~~--l~~~~~~v~~~~~~~----------~~--------------------- 106 (241)
|+.++..+.|.||+|+|||||++.++ .. -+...+.+....... ..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 56778899999999999999999998 33 133333333211000 00
Q ss_pred -----------cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 026258 107 -----------IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (241)
Q Consensus 107 -----------~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 175 (241)
..............+....|.++++||....+.... ........+..++..+.. .++.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEE
Confidence 001122233333444557899999999877753210 113334445566655432 167889
Q ss_pred EEeCCCCCC
Q 026258 176 MATNRPDVL 184 (241)
Q Consensus 176 ~tt~~~~~l 184 (241)
++||..+..
T Consensus 177 ~vtH~~~~~ 185 (251)
T 2ehv_A 177 LTTEAPDPQ 185 (251)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 999886654
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.56 E-value=1.7e-07 Score=74.46 Aligned_cols=78 Identities=15% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH--h-------CCceEEEechhhccc---------c-----------------
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASN--I-------DANFLKVVSSAIIDK---------Y----------------- 106 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~--l-------~~~~~~v~~~~~~~~---------~----------------- 106 (241)
|+.++..++|+||||+||||+++.++.. . +...+.++....... .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4677888999999999999999999985 2 345666654431000 0
Q ss_pred -cchHHHHHHHHHHHHHhCCCeEEEEcCcccccC
Q 026258 107 -IGESARLIREMFGYARDHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 107 -~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~ 139 (241)
.......+..+...+....|.+|+||++..++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 000111122333444557789999999988864
No 115
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.53 E-value=4e-06 Score=75.36 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~ 88 (241)
..|.....++|.++.+.+|.+.+... -.....+.|+|++|+|||+|+..+++
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34445667999999999999988531 12345799999999999999999864
No 116
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.53 E-value=5.9e-08 Score=81.97 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=35.4
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+....|.+|++|| +.+..+......+..++..+.. ..+..+|++||+.+
T Consensus 147 AL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~~---~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 147 ALVKQPKVLLFDE----------PLSNLDANLRMIMRAEIKHLQQ---ELGITSVYVTHDQA 195 (359)
T ss_dssp HHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---HHCCEEEEEESCHH
T ss_pred HHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEcCCHH
Confidence 4448899999999 5666688888888777766531 11567899999854
No 117
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.51 E-value=5.2e-08 Score=82.17 Aligned_cols=31 Identities=39% Similarity=0.475 Sum_probs=26.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4445677889999999999999999999765
No 118
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.49 E-value=4.5e-07 Score=72.22 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=36.1
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
....|.+|++|| +....+......+..++..+.. ..+..+|++||+.+
T Consensus 160 l~~~p~llllDE----------Pts~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 160 LANNPPIILADQ----------PTWALDSKTGEKIMQLLKKLNE---EDGKTVVVVTHDIN 207 (235)
T ss_dssp HTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---HHCCEEEEECSCHH
T ss_pred HHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---HcCCEEEEEcCCHH
Confidence 347899999999 5667788888888888876631 11567999999854
No 119
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.49 E-value=1.6e-06 Score=67.73 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
|+.++..++|.||||+||||+++.++...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4677888999999999999999999985566676666543
No 120
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.49 E-value=5e-07 Score=71.44 Aligned_cols=45 Identities=18% Similarity=0.428 Sum_probs=34.8
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
..|.+|++|| +....+......+.+++..+.. . +..+|++||+.+
T Consensus 157 ~~p~lllLDE----------Pt~~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 157 NEPILLFADE----------PTGNLDSANTKRVMDIFLKINE---G-GTSIVMVTHERE 201 (224)
T ss_dssp TCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCHH
T ss_pred cCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH---C-CCEEEEEcCCHH
Confidence 7789999999 5666788888888888877642 1 467888998743
No 121
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.48 E-value=1.8e-07 Score=78.93 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=51.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc----------------cchHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY----------------IGESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~f~~~~ 122 (241)
|+.++..++|+|+||+|||||+..++... +..+++++........ ....+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45677889999999999999999998655 4566666644321110 0112222323333334
Q ss_pred hCCCeEEEEcCcccccC
Q 026258 123 DHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~ 139 (241)
...+++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56689999999999863
No 122
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.48 E-value=6e-08 Score=82.04 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4456777889999999999999999999765
No 123
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.48 E-value=4e-07 Score=76.78 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=52.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccc----------------ccchHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK----------------YIGESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~f~~~~ 122 (241)
|+.++..++|+||||||||||+..++..+ +..+++++....... .....+..+..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 46677889999999999999999999775 556667765432210 01122233323223333
Q ss_pred hCCCeEEEEcCcccccC
Q 026258 123 DHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~ 139 (241)
...+++++||.+..+..
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999988875
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.47 E-value=1.5e-07 Score=71.19 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHH
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARA 85 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~ 85 (241)
+.++..+.|.||+||||||+++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45677899999999999999994
No 125
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.47 E-value=9.5e-08 Score=80.41 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=34.8
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +.+..+......+..++..+.. ..+..+|++||+.+
T Consensus 143 ~~~P~lLLLDE----------P~s~LD~~~~~~l~~~l~~l~~---~~g~tii~vTHd~~ 189 (348)
T 3d31_A 143 VTNPKILLLDE----------PLSALDPRTQENAREMLSVLHK---KNKLTVLHITHDQT 189 (348)
T ss_dssp TSCCSEEEEES----------SSTTSCHHHHHHHHHHHHHHHH---HTTCEEEEEESCHH
T ss_pred HcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 37799999999 5566688888888887776531 11567899999854
No 126
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.46 E-value=8.4e-07 Score=69.81 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=25.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
|+.++..+.|.||+|||||||++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56778889999999999999999999854
No 127
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.44 E-value=2.1e-07 Score=75.41 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=35.8
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +....+......+.+++..+.. . +..+|++|++.+
T Consensus 175 ~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~ 220 (263)
T 2olj_A 175 AMEPKIMLFDE----------PTSALDPEMVGEVLSVMKQLAN---E-GMTMVVVTHEMG 220 (263)
T ss_dssp TTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---T-TCEEEEECSCHH
T ss_pred HCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh---C-CCEEEEEcCCHH
Confidence 37789999999 5667788888888888877642 1 567889998854
No 128
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.44 E-value=7.5e-07 Score=75.25 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=45.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC----CceEEEech-hh--------cccc-cchHHHHHHHHHHHHHhCCCeEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSS-AI--------IDKY-IGESARLIREMFGYARDHQPCII 129 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~----~~~~~v~~~-~~--------~~~~-~~~~~~~~~~~f~~~~~~~~~vl 129 (241)
.++..++|.||+||||||++++++..+. ..++.+.-+ .+ ..+. .+.....+...+..+....|++|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 4456799999999999999999998762 333332211 00 0000 11111223346677778899999
Q ss_pred EEcCc
Q 026258 130 FMDEI 134 (241)
Q Consensus 130 ~lDe~ 134 (241)
++||.
T Consensus 201 llDEp 205 (356)
T 3jvv_A 201 LVGEM 205 (356)
T ss_dssp EESCC
T ss_pred ecCCC
Confidence 99997
No 129
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.44 E-value=1.4e-07 Score=75.49 Aligned_cols=46 Identities=11% Similarity=0.286 Sum_probs=35.5
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +....+......+..++..+.. .+..+|++||+.+
T Consensus 155 ~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~~~~----~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 155 MSRPKLLMMDE----------PSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQNAL 200 (240)
T ss_dssp TTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHH
T ss_pred HcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 37789999999 5666788888888888877642 1467888998853
No 130
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.43 E-value=6.4e-07 Score=78.33 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=37.5
Q ss_pred ChhhhhccccCCCCCcccccc-chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 15 DPVVYNMLHEDPGNVSYSAVG-GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~-g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+..+.-+.+++.+.+|+++- ++.+++..+...+.. ...+++|.|++|||||+++..++..+
T Consensus 7 ~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 7 HHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --------------CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455566677788899999975 666666666666542 22389999999999999999999877
No 131
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.43 E-value=5.9e-07 Score=73.11 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=36.6
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+....|.+|++|| +....+......+..++..+.. ..+..+|++|++.+
T Consensus 170 aL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~~~~---~~g~tviivtHd~~ 218 (271)
T 2ixe_A 170 ALIRKPRLLILDN----------ATSALDAGNQLRVQRLLYESPE---WASRTVLLITQQLS 218 (271)
T ss_dssp HHTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHCTT---TTTSEEEEECSCHH
T ss_pred HHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHHh---hcCCEEEEEeCCHH
Confidence 3447899999999 5666788888888888877632 12567888998754
No 132
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.42 E-value=6.5e-08 Score=82.11 Aligned_cols=31 Identities=39% Similarity=0.472 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4456778889999999999999999999765
No 133
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.42 E-value=8e-08 Score=76.85 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=35.3
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
....|.+|++|| +....+......+.+++..+.. ..+..+|++||+.+
T Consensus 141 l~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~~---~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 141 LVIQPRLLLLDE----------PLSAVDLKTKGVLMEELRFVQR---EFDVPILHVTHDLI 188 (240)
T ss_dssp HTTCCSSBEEES----------TTSSCCHHHHHHHHHHHHHHHH---HHTCCEEEEESCHH
T ss_pred HHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 347899999999 5666788888888888876531 01456888998754
No 134
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.42 E-value=1.1e-06 Score=74.51 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=51.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc----------------cchHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY----------------IGESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~f~~~~ 122 (241)
|+.++..++|+|+||+|||+++..++..+ +..+++++........ ....+..+..+-..+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46677889999999999999999998765 5567777654322111 0112222222222333
Q ss_pred hCCCeEEEEcCcccccC
Q 026258 123 DHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~ 139 (241)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45688999999999974
No 135
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.42 E-value=2.7e-07 Score=74.91 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=37.4
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
....|.+|++|| +....+......+..++..+.. . +..+|++||+.+.+
T Consensus 153 L~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~~---~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 153 IVHEPDILILDE----------PLVGLDREGKTDLLRIVEKWKT---L-GKTVILISHDIETV 201 (266)
T ss_dssp HTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCTTT
T ss_pred HHcCCCEEEEcC----------ccccCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 347789999999 5666788888888888877632 1 56788999987654
No 136
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.42 E-value=1.1e-06 Score=72.54 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4456778889999999999999999999765
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.41 E-value=8.8e-06 Score=78.80 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=90.0
Q ss_pred cCCCCCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCceEE
Q 026258 24 EDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI-------DANFLK 96 (241)
Q Consensus 24 ~~~~~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l-------~~~~~~ 96 (241)
....|.....++|.++.+++|.+.+... -.....+.|+|+.|+||||||+.+++.. ...++.
T Consensus 116 ~~~~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~ 184 (1249)
T 3sfz_A 116 EGGVPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHW 184 (1249)
T ss_dssp HTTCCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEE
T ss_pred cCCCCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEE
Confidence 3445556667999999999999988421 1234568999999999999999987652 112333
Q ss_pred Eechhhccc---------------------ccchHHHHHHHHHHHHHh--CCCeEEEEcCcccccCCCCCCCCCccHHHH
Q 026258 97 VVSSAIIDK---------------------YIGESARLIREMFGYARD--HQPCIIFMDEIDAIGGRRFSEGTSADREIQ 153 (241)
Q Consensus 97 v~~~~~~~~---------------------~~~~~~~~~~~~f~~~~~--~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~ 153 (241)
++....... ........+...+..... .++-+|+|||++..
T Consensus 185 v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~---------------- 248 (1249)
T 3sfz_A 185 VSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP---------------- 248 (1249)
T ss_dssp EECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------
T ss_pred EEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------
Confidence 433221000 000011112222222222 23679999998654
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCC-CCHHHHHHHHHHhHcC
Q 026258 154 RTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL-PNEQSRMEILKIHAAG 218 (241)
Q Consensus 154 ~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~-p~~~~r~~il~~~~~~ 218 (241)
. .+... .++.+||+||.+..-.. ... .....+.++. ++.++-.+++..+...
T Consensus 249 ~-------~~~~~--~~~~~ilvTtR~~~~~~-~~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 249 W-------VLKAF--DNQCQILLTTRDKSVTD-SVM---GPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp H-------HHTTT--CSSCEEEEEESSTTTTT-TCC---SCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred H-------HHHhh--cCCCEEEEEcCCHHHHH-hhc---CCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 0 11111 23678999987654221 111 1224577775 8888888888877643
No 138
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.40 E-value=1.5e-06 Score=69.89 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=36.3
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+....|.+|++|| +....+......+.+++..+.. ..+..+|++||+.+
T Consensus 142 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~~---~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 142 AIASECKLILLDE----------PTSALDLANQDIVLSLLIDLAQ---SQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHTTCSEEEESS----------SSTTSCHHHHHHHHHHHHHHHH---TSCCEEEEEESCHH
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHH
Confidence 3448899999999 5666788888888888877632 11467888998854
No 139
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.38 E-value=2.8e-07 Score=74.44 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=37.5
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
...|.+|++|| +....+......+..++..+.. . +..+|++||+.+.+
T Consensus 169 ~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~~---~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 169 MTNPKMIVMDE----------PIAGVAPGLAHDIFNHVLELKA---K-GITFLIIEHRLDIV 216 (257)
T ss_dssp HTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCSTT
T ss_pred HcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 37899999999 5667788888888888887642 1 56789999987654
No 140
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.38 E-value=2.2e-06 Score=68.78 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=36.7
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+....|.+|++|| +....+......+..++..+.. +..+|++|++.+.
T Consensus 159 aL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~~~~-----g~tviivtH~~~~ 206 (247)
T 2ff7_A 159 ALVNNPKILIFDE----------ATSALDYESEHVIMRNMHKICK-----GRTVIIIAHRLST 206 (247)
T ss_dssp HHTTCCSEEEECC----------CCSCCCHHHHHHHHHHHHHHHT-----TSEEEEECSSGGG
T ss_pred HHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHcC-----CCEEEEEeCCHHH
Confidence 3447789999999 5666788888888888887631 5678889988653
No 141
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.37 E-value=1.1e-06 Score=70.03 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.++...
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456778889999999999999999999765
No 142
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.36 E-value=1.2e-06 Score=74.36 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=26.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3445677889999999999999999999766
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.35 E-value=9.6e-07 Score=75.69 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=49.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEEechhhccc--------ccc----------------
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAIIDK--------YIG---------------- 108 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---------~~~~~~v~~~~~~~~--------~~~---------------- 108 (241)
|+.++..+.|+||||||||||++.++-.. +...++++....... ..+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 67788889999999999999999776333 233666654331100 000
Q ss_pred ---hHHHHHHHHHHHHHhCCCeEEEEcCcccccCC
Q 026258 109 ---ESARLIREMFGYARDHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 109 ---~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~ 140 (241)
.....+..+...+....|.+|+||++..++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 01122223334444567899999999888653
No 144
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.34 E-value=1.5e-06 Score=69.75 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
++.+.++..+.|.||+|+|||||++.++..+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44556778899999999999999999997664
No 145
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.34 E-value=7.8e-07 Score=74.24 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=55.0
Q ss_pred hHHHHhc--CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEEechhhc--c-------cc--------
Q 026258 55 PELFLRV--GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAII--D-------KY-------- 106 (241)
Q Consensus 55 ~~~~~~~--~~~~~~~vll~G~~GsGKTtl~~~la~~l---------~~~~~~v~~~~~~--~-------~~-------- 106 (241)
+.+..-+ |+.++..++|+|+||+|||+++..++... +..+++++..... . ..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~ 173 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVM 173 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 3444444 56778889999999999999999999765 4456677654421 0 00
Q ss_pred -------cchHH---HHHHHHHHHHHh-CCCeEEEEcCcccccC
Q 026258 107 -------IGESA---RLIREMFGYARD-HQPCIIFMDEIDAIGG 139 (241)
Q Consensus 107 -------~~~~~---~~~~~~f~~~~~-~~~~vl~lDe~d~l~~ 139 (241)
..... ..+..+...+.. ..+.+|+||.+..++.
T Consensus 174 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 174 NNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 00011 223334444455 6789999999999864
No 146
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.33 E-value=3.6e-07 Score=73.51 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=35.0
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+..++..+.. .+..+|++||+.+.
T Consensus 160 ~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 160 LEPTYAVLDE----------TDSGLDIDALKVVARGVNAMRG----PNFGALVITHYQRI 205 (250)
T ss_dssp HCCSEEEEEC----------GGGTTCHHHHHHHHHHHHHHCS----TTCEEEEECSSSGG
T ss_pred cCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHh----cCCEEEEEecCHHH
Confidence 5678999999 4555688888888888887742 25678899998653
No 147
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.33 E-value=1.5e-06 Score=70.36 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=35.5
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +....+......+..++..+.. . +..+|++||+.+
T Consensus 169 ~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~~---~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 169 AMEPDVLLFDE----------PTSALDPELVGEVLRIMQQLAE---E-GKTMVVVTHEMG 214 (262)
T ss_dssp HTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHHH---T-TCCEEEECSCHH
T ss_pred hcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHH
Confidence 37789999999 5666788888888888877642 1 467888998854
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.33 E-value=1e-06 Score=74.23 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=26.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.|+.++..+.|+||+|||||||++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 366778889999999999999999999876
No 149
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.32 E-value=9.1e-07 Score=74.74 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=50.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcccc----------------cchHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKY----------------IGESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~f~~~~ 122 (241)
|+.++..++|+|+||+|||+++..++..+ +..++.++........ ..........+-..+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46778889999999999999999998765 5567777763221110 0111222222222233
Q ss_pred hCCCeEEEEcCcccccC
Q 026258 123 DHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~ 139 (241)
...+++|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999864
No 150
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.32 E-value=1.3e-06 Score=73.45 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=54.3
Q ss_pred hHHHHhc--CCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCceEEEechhhccc------------------
Q 026258 55 PELFLRV--GIKPPKGVLLYGPPGTGKTLLARAIASNI---------DANFLKVVSSAIIDK------------------ 105 (241)
Q Consensus 55 ~~~~~~~--~~~~~~~vll~G~~GsGKTtl~~~la~~l---------~~~~~~v~~~~~~~~------------------ 105 (241)
+.+..-+ |+.++..++|+||||+|||+++..++... +..+++++.......
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l 188 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVL 188 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3344444 57778889999999999999999999863 445666665442110
Q ss_pred ---------ccchHHHHHHHHHHHHHh--CCCeEEEEcCcccccC
Q 026258 106 ---------YIGESARLIREMFGYARD--HQPCIIFMDEIDAIGG 139 (241)
Q Consensus 106 ---------~~~~~~~~~~~~f~~~~~--~~~~vl~lDe~d~l~~ 139 (241)
........+..+...+.. ..+.+|+||.+..++.
T Consensus 189 ~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 189 DNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred hceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 001111222233344445 6789999999999874
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.31 E-value=3.8e-06 Score=66.65 Aligned_cols=37 Identities=38% Similarity=0.459 Sum_probs=28.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
|+.++..++|.||||+|||+++..++... +..++.++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56778889999999999999988887543 34444444
No 152
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.31 E-value=1.8e-07 Score=79.84 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||+++++...
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4456788899999999999999999999643
No 153
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.31 E-value=2.4e-05 Score=69.81 Aligned_cols=144 Identities=14% Similarity=0.131 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCce---EEEechhhc----
Q 026258 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS----NIDANF---LKVVSSAII---- 103 (241)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~----~l~~~~---~~v~~~~~~---- 103 (241)
+|.++.+++|.+.+... +-.....+.|+|+.|+||||||+.+++ .....| +.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999998531 112346799999999999999999996 332221 222222210
Q ss_pred cc--------c--------c----chHHHHHHHHHHHHHhCC-CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHH
Q 026258 104 DK--------Y--------I----GESARLIREMFGYARDHQ-PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 162 (241)
Q Consensus 104 ~~--------~--------~----~~~~~~~~~~f~~~~~~~-~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~ 162 (241)
.. . . ......+...+......+ +.+|+|||++.. + .+ .+. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~-----~~-~~~-~ 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------E-----TI-RWA-Q 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------H-----HH-HHH-H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------h-----hh-ccc-c
Confidence 00 0 0 000111222232233343 789999998664 1 11 111 1
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhccCCCCcceEEEcCCCCHHHHHHHHHHhH
Q 026258 163 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA 216 (241)
Q Consensus 163 ~~~~~~~~~~~vI~tt~~~~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~~~~ 216 (241)
. ++..||+||.+.. +..... .....+.++..+.++-.+++..+.
T Consensus 263 ~------~gs~ilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVE-ISNAAS---QTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp H------TTCEEEEEESBGG-GGGGCC---SCEEEEECCCCCHHHHHHHHHHTS
T ss_pred c------CCCEEEEEcCCHH-HHHHcC---CCCeEEECCCCCHHHHHHHHHHHh
Confidence 1 3678888887632 111111 122468899999999999998874
No 154
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=98.30 E-value=9.8e-06 Score=72.02 Aligned_cols=74 Identities=15% Similarity=0.333 Sum_probs=54.9
Q ss_pred eEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCChhccCCCCcceEEEcCCCC
Q 026258 127 CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD--VLDPALLRPGRLDRKIEIPLPN 204 (241)
Q Consensus 127 ~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~--~l~~~l~~~~r~~~~i~l~~p~ 204 (241)
-+|+|||++.++... .......+.++...-.. -++.+|++|+.+. .++..+++ -|...+.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GRa----~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKARA----AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCTT----TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHhh----CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 489999998885321 23444555666655433 3899999999987 78888887 788888999998
Q ss_pred HHHHHHHHH
Q 026258 205 EQSRMEILK 213 (241)
Q Consensus 205 ~~~r~~il~ 213 (241)
..+-..++.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888887774
No 155
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.30 E-value=1.3e-06 Score=73.71 Aligned_cols=31 Identities=32% Similarity=0.466 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|||||||++.++...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4456778889999999999999999999765
No 156
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.30 E-value=2.2e-07 Score=72.99 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=26.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445677789999999999999999999765
No 157
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.28 E-value=1.5e-06 Score=70.32 Aligned_cols=71 Identities=20% Similarity=0.429 Sum_probs=43.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC----CceEEEech-hh--------ccc-ccchHHHHHHHHHHHHHhCCCeEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSS-AI--------IDK-YIGESARLIREMFGYARDHQPCII 129 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~----~~~~~v~~~-~~--------~~~-~~~~~~~~~~~~f~~~~~~~~~vl 129 (241)
.++..++|.||+||||||++++++.... ..+...... .. ..+ ..+.....++..+..+....|++|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 5677899999999999999999998763 222222110 00 000 000000122445555656689999
Q ss_pred EEcCc
Q 026258 130 FMDEI 134 (241)
Q Consensus 130 ~lDe~ 134 (241)
++||.
T Consensus 103 llDEp 107 (261)
T 2eyu_A 103 FVGEM 107 (261)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 99996
No 158
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.26 E-value=2.6e-06 Score=68.86 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=36.8
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
+....|.+|++|| +....+......+..++..+.. +..+|++||+.+.+
T Consensus 169 aL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~l~~-----~~tviivtH~~~~~ 217 (260)
T 2ghi_A 169 CLLKDPKIVIFDE----------ATSSLDSKTEYLFQKAVEDLRK-----NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHCCSEEEEEC----------CCCTTCHHHHHHHHHHHHHHTT-----TSEEEEECSSGGGS
T ss_pred HHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHhcC-----CCEEEEEcCCHHHH
Confidence 3346788999999 5666788888888888887642 46788899986543
No 159
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.26 E-value=6.1e-06 Score=66.73 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=35.3
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
....|.+|++|| +....+......+..++..+. . .+|++||+.+.
T Consensus 143 L~~~p~lllLDE----------Pts~LD~~~~~~l~~~L~~~~------~-tviivtHd~~~ 187 (263)
T 2pjz_A 143 LASQPEIVGLDE----------PFENVDAARRHVISRYIKEYG------K-EGILVTHELDM 187 (263)
T ss_dssp HHTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHSC------S-EEEEEESCGGG
T ss_pred HHhCCCEEEEEC----------CccccCHHHHHHHHHHHHHhc------C-cEEEEEcCHHH
Confidence 347789999999 566678888889988888763 2 78889998543
No 160
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.26 E-value=9.3e-07 Score=70.75 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=26.6
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456778889999999999999999999654
No 161
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.25 E-value=4.5e-06 Score=78.40 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=59.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCce----EE----------EechhhcccccchHHHHHHHHHHHH
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANF----LK----------VVSSAIIDKYIGESARLIREMFGYA 121 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~----~~----------v~~~~~~~~~~~~~~~~~~~~f~~~ 121 (241)
+.+..+..++|.||+|+||||+++.++... +..+ .. +...+............+.+....+
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHH
Confidence 344567789999999999999999987432 2110 11 1111111111122222333333222
Q ss_pred H-hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 122 R-DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM-ELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 122 ~-~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~-~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
. ...|++|++||. ..+.+......+. .++..+.. ..+..+|++||+.+
T Consensus 748 ~~a~~p~LlLLDEP----------~~GlD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~e 797 (918)
T 3thx_B 748 RKATSQSLVILDEL----------GRGTSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPP 797 (918)
T ss_dssp HHCCTTCEEEEEST----------TTTSCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGG
T ss_pred HhccCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHH
Confidence 2 467899999995 3444655544444 56655421 12678999999854
No 162
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.24 E-value=3.4e-06 Score=66.87 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445677889999999999999999999766
No 163
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.24 E-value=7.1e-06 Score=74.04 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 117 MFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 117 ~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
.++.+....|.+|++|| +++..|......+.+.+..+.. +..+|++||+.+.
T Consensus 501 ~iAral~~~p~illlDE----------pts~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~ 552 (598)
T 3qf4_B 501 AITRAFLANPKILILDE----------ATSNVDTKTEKSIQAAMWKLME-----GKTSIIIAHRLNT 552 (598)
T ss_dssp HHHHHHHTCCSEEEECC----------CCTTCCHHHHHHHHHHHHHHHT-----TSEEEEESCCTTH
T ss_pred HHHHHHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHH
Confidence 34455568899999999 4566688888888887776642 5678889998654
No 164
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.23 E-value=9.8e-06 Score=66.47 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++.++..++|.|+||+|||||++.++..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467788899999999999999999998766
No 165
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.22 E-value=7.8e-06 Score=66.57 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
|+.++..++|+||+|+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45667889999999999999999998654
No 166
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.20 E-value=8.7e-06 Score=64.14 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=42.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechh-------hcccccchH-----HHHHHHHHHHHHh----CC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA-------IIDKYIGES-----ARLIREMFGYARD----HQ 125 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~-------~~~~~~~~~-----~~~~~~~f~~~~~----~~ 125 (241)
++.-++++|++|+||||++..++..+ +..++.+.... +.+. .+.. ......++..+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 45668889999999999988888766 44555442111 1111 0100 0011233444443 34
Q ss_pred CeEEEEcCcccc
Q 026258 126 PCIIFMDEIDAI 137 (241)
Q Consensus 126 ~~vl~lDe~d~l 137 (241)
+++|+|||++.+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999877
No 167
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.19 E-value=1e-05 Score=71.25 Aligned_cols=75 Identities=16% Similarity=0.388 Sum_probs=50.8
Q ss_pred Ce-EEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCChhccCCCCcceEEEcCC
Q 026258 126 PC-IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD--VLDPALLRPGRLDRKIEIPL 202 (241)
Q Consensus 126 ~~-vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~--~l~~~l~~~~r~~~~i~l~~ 202 (241)
|. ++++||+..++.. ........+..+..... .-++.+|++|+.+. .++..++. -+...+.+..
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gR----a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKVEELIARLAQKAR----AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCG----GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhh----hCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 8999999777421 01223333444443322 22789999999986 57777777 7778888988
Q ss_pred CCHHHHHHHHH
Q 026258 203 PNEQSRMEILK 213 (241)
Q Consensus 203 p~~~~r~~il~ 213 (241)
.+..+.+.++.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 88888888775
No 168
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4e-06 Score=75.57 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=37.3
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
+....|.+|++|| +.+..+......+..++..+... +..+|+++|+.+.
T Consensus 235 aL~~~p~llllDE----------Pts~LD~~~~~~l~~~l~~l~~~----g~tvi~vtHdl~~ 283 (608)
T 3j16_B 235 SCVQEADVYMFDE----------PSSYLDVKQRLNAAQIIRSLLAP----TKYVICVEHDLSV 283 (608)
T ss_dssp HHHSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHGGGTT----TCEEEEECSCHHH
T ss_pred HHHhCCCEEEEEC----------cccCCCHHHHHHHHHHHHHHHhC----CCEEEEEeCCHHH
Confidence 4457899999999 56667888888888888877532 4578889988543
No 169
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.19 E-value=1.1e-06 Score=78.19 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------eEEEech----------h--------h------------
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDAN----------FLKVVSS----------A--------I------------ 102 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~----------~~~v~~~----------~--------~------------ 102 (241)
+.++..+.|.||+|||||||+++++...... +..+... . .
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 3567789999999999999999999765211 1111000 0 0
Q ss_pred --------cccccchHH--HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCe
Q 026258 103 --------IDKYIGESA--RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKV 172 (241)
Q Consensus 103 --------~~~~~~~~~--~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 172 (241)
....+...+ ...+-.++.+....|.+|++|| ++...+......+..++..+.. ..+.
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l~~---~~g~ 437 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRVTR---ERKA 437 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH---HTTC
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH---hCCC
Confidence 000111111 2223344555668899999999 5667788888888888876631 1256
Q ss_pred EEEEEeCCCC
Q 026258 173 KMIMATNRPD 182 (241)
Q Consensus 173 ~vI~tt~~~~ 182 (241)
.+|++|++.+
T Consensus 438 tvi~vsHdl~ 447 (538)
T 3ozx_A 438 VTFIIDHDLS 447 (538)
T ss_dssp EEEEECSCHH
T ss_pred EEEEEeCCHH
Confidence 7888888754
No 170
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.18 E-value=4.1e-06 Score=68.35 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++..+
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4456677889999999999999999999765
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=1.1e-06 Score=67.86 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.+.++..++|.|++||||||+++.+++.++..++..+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3456678999999999999999999999998887654
No 172
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.17 E-value=3.5e-06 Score=75.06 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
++.+....|.+|++|| ++...+......+..++..+.. .+..+|++||+.+
T Consensus 169 iAraL~~~P~lLlLDE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 169 IAAALLRNATFYFFDE----------PSSYLDIRQRLNAARAIRRLSE----EGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH
T ss_pred HHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHH
Confidence 3444558899999999 5667788888888888877643 1578999999754
No 173
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.17 E-value=4.8e-06 Score=74.88 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 119 ~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
+.+....|.++++|| +.+..|......+.+.+..+.. +..+|++||+.+.+
T Consensus 489 Aral~~~p~illlDE----------pts~LD~~~~~~i~~~l~~~~~-----~~t~i~itH~l~~~ 539 (578)
T 4a82_A 489 ARIFLNNPPILILDE----------ATSALDLESESIIQEALDVLSK-----DRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHTT-----TSEEEEECSSGGGT
T ss_pred HHHHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHcC-----CCEEEEEecCHHHH
Confidence 334447789999999 4566688888888888876632 35788889986644
No 174
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.16 E-value=4.8e-06 Score=68.73 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=49.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEechhhcccc----------------cchHHHH-HHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSAIIDKY----------------IGESARL-IREMFG 119 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~~~~~~~~~----------------~~~~~~~-~~~~f~ 119 (241)
|+.++ .++|+||||+|||||+..++... +..+++++...-.... ....+.. + .+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l-~i~~ 102 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRI-DMVN 102 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHH-HHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHH-HHHH
Confidence 45666 68999999999999988776554 4567777754432210 1112222 2 1222
Q ss_pred H---HHhCCCeEEEEcCcccccCC
Q 026258 120 Y---ARDHQPCIIFMDEIDAIGGR 140 (241)
Q Consensus 120 ~---~~~~~~~vl~lDe~d~l~~~ 140 (241)
. +....|++|++|-+..+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHhhccCceEEEEecccccccc
Confidence 2 34467999999999999753
No 175
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.15 E-value=5.2e-06 Score=73.88 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=38.9
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
++.+....|.+|++|| +++..+......+..++..+.. +..+|+++++.+.
T Consensus 149 iA~aL~~~p~illlDE----------Pts~LD~~~~~~l~~~l~~l~~-----g~tii~vsHdl~~ 199 (538)
T 3ozx_A 149 VAASLLREADVYIFDQ----------PSSYLDVRERMNMAKAIRELLK-----NKYVIVVDHDLIV 199 (538)
T ss_dssp HHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHCT-----TSEEEEECSCHHH
T ss_pred HHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHhC-----CCEEEEEEeChHH
Confidence 3445558899999999 5666788888888888887742 4678899988643
No 176
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.14 E-value=1.1e-05 Score=72.59 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
++.+....|.++++|| +++..|......+.+.+..+.. +..+|++||+.+
T Consensus 490 lARal~~~p~illlDE----------pts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~l~ 539 (587)
T 3qf4_A 490 IARALVKKPKVLILDD----------CTSSVDPITEKRILDGLKRYTK-----GCTTFIITQKIP 539 (587)
T ss_dssp HHHHHHTCCSEEEEES----------CCTTSCHHHHHHHHHHHHHHST-----TCEEEEEESCHH
T ss_pred HHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHhCC-----CCEEEEEecChH
Confidence 3444557899999999 4666788888888888876532 567888999864
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.12 E-value=5.5e-06 Score=63.66 Aligned_cols=24 Identities=42% Similarity=0.732 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+.|.||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358999999999999999999876
No 178
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.11 E-value=3.3e-06 Score=63.77 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
+..++|.|+|||||||+++.+++.++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 3579999999999999999999999888776654
No 179
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.11 E-value=2e-05 Score=68.70 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~ 98 (241)
|+.++..++|.|+||+|||+++..++..+ +.+++.++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 67888889999999999999999998755 44566655
No 180
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.10 E-value=3.9e-06 Score=69.82 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
|+.++..++|+|+||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5677788999999999999999999875
No 181
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.09 E-value=1.8e-05 Score=74.51 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=56.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH-----hCCce--E------------EEechhhcccccchHHHHHHHHHHHH-H
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASN-----IDANF--L------------KVVSSAIIDKYIGESARLIREMFGYA-R 122 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~-----l~~~~--~------------~v~~~~~~~~~~~~~~~~~~~~f~~~-~ 122 (241)
+..+..++|.||+|+||||+++.++.. .|..+ - .+...+............+.++...+ .
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~ 738 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRS 738 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh
Confidence 345567999999999999999999532 22211 0 11111111111111222222222222 1
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l-~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|++|++||. ..+.+......+ ..+++.+.. ..+..+|++||+.+
T Consensus 739 a~~~sLlLLDEp----------~~GlD~~~~~~i~~~il~~l~~---~~g~~vl~aTH~~e 786 (934)
T 3thx_A 739 ATKDSLIIIDEL----------GRGTSTYDGFGLAWAISEYIAT---KIGAFCMFATHFHE 786 (934)
T ss_dssp CCTTCEEEEESC----------SCSSCHHHHHHHHHHHHHHHHH---TTCCEEEEEESCGG
T ss_pred ccCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHHHh---cCCCEEEEEcCcHH
Confidence 467899999995 333455444343 555555431 12578899999753
No 182
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.09 E-value=2.2e-06 Score=65.64 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+.-.+++||+|+||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999987666554
No 183
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.08 E-value=6.4e-06 Score=74.09 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.+++..
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556788899999999999999999999655
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.07 E-value=1.7e-05 Score=79.42 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=54.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccccc----------------chHHHHHHHHHHHHH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDKYI----------------GESARLIREMFGYAR 122 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~f~~~~ 122 (241)
++.++.+++++||||||||+|+..++.+. +....+++......... ...+...........
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57788999999999999999999998655 66777777665433221 111222233333444
Q ss_pred hCCCeEEEEcCcccccC
Q 026258 123 DHQPCIIFMDEIDAIGG 139 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~ 139 (241)
...|++|+||++..+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 57799999999999843
No 185
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.07 E-value=1.7e-05 Score=71.39 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=36.3
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
+....|.++++|| +.+..|......+.+.+..+.. +..+|++||+.+.+
T Consensus 494 al~~~p~illlDE----------pts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~~~ 542 (582)
T 3b60_A 494 ALLRDSPILILDE----------ATSALDTESERAIQAALDELQK-----NRTSLVIAHRLSTI 542 (582)
T ss_dssp HHHHCCSEEEEET----------TTSSCCHHHHHHHHHHHHHHHT-----TSEEEEECSCGGGT
T ss_pred HHHhCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHhC-----CCEEEEEeccHHHH
Confidence 3446788999999 4666788888888888877642 45788889886543
No 186
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.06 E-value=2.5e-06 Score=64.91 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
+..++|.|++||||||+++.+++.++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999887665
No 187
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.06 E-value=2.8e-06 Score=64.92 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
..+..++|.|+|||||||+++.++..++..++..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 44567999999999999999999999988776643
No 188
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.05 E-value=4.5e-06 Score=70.96 Aligned_cols=75 Identities=20% Similarity=0.422 Sum_probs=45.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CceEEEech-h--------hcccc-cchHHHHHHHHHHHHHhCC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSS-A--------IIDKY-IGESARLIREMFGYARDHQ 125 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~----~~~~~v~~~-~--------~~~~~-~~~~~~~~~~~f~~~~~~~ 125 (241)
++.+.++..++|.||+||||||++++++..+. ..++.+... . ++.+. .+.....+...+..+....
T Consensus 130 ~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 130 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp HHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred HHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhC
Confidence 33456677899999999999999999998763 233333211 0 01110 0000112234455555678
Q ss_pred CeEEEEcCc
Q 026258 126 PCIIFMDEI 134 (241)
Q Consensus 126 ~~vl~lDe~ 134 (241)
|++|++||+
T Consensus 210 pd~illdE~ 218 (372)
T 2ewv_A 210 PDVIFVGEM 218 (372)
T ss_dssp CSEEEESCC
T ss_pred cCEEEECCC
Confidence 999999997
No 189
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.04 E-value=2.4e-05 Score=62.03 Aligned_cols=37 Identities=32% Similarity=0.296 Sum_probs=28.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~ 98 (241)
|+.++..++|+|+||+|||+++..+|... +..++.+.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 56778889999999999999998876432 45555544
No 190
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.03 E-value=8.6e-06 Score=73.47 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=38.4
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
++.+....|.+|++|| ++...+......+.+++..+.. .+..+|++||+..
T Consensus 239 IAraL~~~P~lLlLDE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvIivsHdl~ 289 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDE----------PSSYLDIRQRLKVARVIRRLAN----EGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH
T ss_pred HHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEecChH
Confidence 3445558899999999 5666788888888888887642 1568899999754
No 191
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.03 E-value=3.6e-06 Score=64.32 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=31.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
+.++..++|.||+||||||+++.+++..+...+.++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 46677899999999999999999998876666666543
No 192
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.01 E-value=0.00011 Score=60.72 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccc--------------------ccchHHHHHHHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK--------------------YIGESARLIREMFGY 120 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~f~~ 120 (241)
.++..++|.|++|+||||++..+|..+ +..+.-+++...... ..+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456679999999999999999999876 444444443211100 000111122233444
Q ss_pred HHhCCCeEEEEcCccc
Q 026258 121 ARDHQPCIIFMDEIDA 136 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~ 136 (241)
+....++++++|+...
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5667789999998754
No 193
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.00 E-value=6.1e-06 Score=74.39 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=37.0
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
++.+....|.+|++|| ++...+......+..++..+.. ..+..+|++||+.+
T Consensus 478 iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~ll~~l~~---~~g~tviivtHdl~ 529 (608)
T 3j16_B 478 IVLALGIPADIYLIDE----------PSAYLDSEQRIICSKVIRRFIL---HNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHTTSCCSEEEECC----------TTTTCCHHHHHHHHHHHHHHHH---HHTCEEEEECSCHH
T ss_pred HHHHHHhCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 3444557899999999 5667788888888777776521 01567889998854
No 194
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.00 E-value=1.7e-05 Score=65.03 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3456778889999999999999999999765
No 195
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.99 E-value=8.2e-06 Score=73.59 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=35.2
Q ss_pred hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 123 DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
...|.+|++|| +....+...+..+..++..+.. ..+..+|++||+..
T Consensus 487 ~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~~---~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 487 LRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLME---KNEKTALVVEHDVL 533 (607)
T ss_dssp TSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH---HTTCEEEEECSCHH
T ss_pred HhCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 37789999999 5667788888888888877521 11567888898754
No 196
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.99 E-value=5.2e-06 Score=62.14 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.++|.|++||||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998887665
No 197
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.99 E-value=3.5e-05 Score=67.01 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEec
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVS 99 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~~ 99 (241)
|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67788889999999999999999998654 445666553
No 198
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.98 E-value=4.3e-06 Score=63.77 Aligned_cols=34 Identities=38% Similarity=0.526 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH-hCCceEEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASN-IDANFLKV 97 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~-l~~~~~~v 97 (241)
..+..++|+|++||||||+++.++.. ++.+++..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 44567999999999999999999998 67666544
No 199
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.98 E-value=2.3e-05 Score=76.75 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=28.1
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
++.+.++..+.|.||+||||||+++.+.+....
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 445678889999999999999999999977633
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.98 E-value=5.7e-06 Score=62.11 Aligned_cols=31 Identities=29% Similarity=0.711 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
+..++|.|++||||||+++.++..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3569999999999999999999999876554
No 201
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.97 E-value=5e-06 Score=63.01 Aligned_cols=34 Identities=35% Similarity=0.592 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
..+..++|.|+|||||||+++.+++.++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999998776544
No 202
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.97 E-value=3.3e-05 Score=68.57 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhc----c----------------------ccc--chH
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII----D----------------------KYI--GES 110 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~----~----------------------~~~--~~~ 110 (241)
++.++..++|.|++|+|||||++.++... +..++.+...... . ..+ -+.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 56778889999999999999999999765 3333333321100 0 000 022
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 111 ARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 111 ~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
....+.+...+....|.+|++|=+..+-.. ....+....+..++..+... ++.+|++++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~~~----g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAKQE----EITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHHHT----TCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 344455666667788999999965555211 01123555666666665432 57788888765
No 203
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.97 E-value=9.4e-06 Score=67.85 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEechhhc------cc--ccchHHHHHHHHHHHHHhCCCeEEEEcC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAII------DK--YIGESARLIREMFGYARDHQPCIIFMDE 133 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~~~~------~~--~~~~~~~~~~~~f~~~~~~~~~vl~lDe 133 (241)
.++..++|.||+||||||++++++..... ..+.++..... .. +........+..+..+....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 45678999999999999999999987733 23333322110 00 1100112234456667778899999999
Q ss_pred c
Q 026258 134 I 134 (241)
Q Consensus 134 ~ 134 (241)
.
T Consensus 249 ~ 249 (330)
T 2pt7_A 249 L 249 (330)
T ss_dssp C
T ss_pred C
Confidence 6
No 204
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.96 E-value=9.1e-06 Score=72.38 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=64.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc---------eEEEechhh--cccccchH----------------------
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDAN---------FLKVVSSAI--IDKYIGES---------------------- 110 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~---------~~~v~~~~~--~~~~~~~~---------------------- 110 (241)
.++..+.|.||+|+|||||+++++...... +..+..... ........
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 467789999999999999999999765211 111111000 00000000
Q ss_pred -------------H--HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 026258 111 -------------A--RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMI 175 (241)
Q Consensus 111 -------------~--~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 175 (241)
+ ...+-.++.+....|.+|++|| ++...+......+..++..+.. ..+..+|
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE----------Pt~~LD~~~~~~i~~~l~~l~~---~~g~tvi 456 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLME---KNEKTAL 456 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH---HHTCEEE
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHH---hCCCEEE
Confidence 0 1111122233347789999999 6667788888888888876521 0146788
Q ss_pred EEeCCCC
Q 026258 176 MATNRPD 182 (241)
Q Consensus 176 ~tt~~~~ 182 (241)
++|++.+
T Consensus 457 ~vsHd~~ 463 (538)
T 1yqt_A 457 VVEHDVL 463 (538)
T ss_dssp EECSCHH
T ss_pred EEeCCHH
Confidence 8988854
No 205
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.95 E-value=0.00013 Score=60.55 Aligned_cols=37 Identities=32% Similarity=0.289 Sum_probs=29.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
|+.++.-++|.|+||+|||+++..+|... +.+++.+.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67888889999999999999999998654 34555554
No 206
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.95 E-value=8.9e-05 Score=56.95 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechh---------hccccc-----------------chHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA---------IIDKYI-----------------GESARLIRE 116 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~---------~~~~~~-----------------~~~~~~~~~ 116 (241)
...+++++++|.||||++-.++-.. |..+..+.... +..... .........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3569999999999999999998666 55555552211 111110 001122233
Q ss_pred HHHHHH----hCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 117 MFGYAR----DHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 117 ~f~~~~----~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
.+..++ ...+++|+|||+........ .+ ...+..++. .+..+.-+|+|++.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~-----l~---~~ev~~~l~-----~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDY-----LP---LEEVISALN-----ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTS-----SC---HHHHHHHHH-----TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCC-----CC---HHHHHHHHH-----hCcCCCEEEEECCCC
Confidence 333333 25588999999965422110 01 123444554 233478899999874
No 207
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.93 E-value=6e-06 Score=61.84 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.+++|.|++||||||+++.+++.++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999887654
No 208
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.92 E-value=5.3e-06 Score=62.59 Aligned_cols=31 Identities=39% Similarity=0.622 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.++|.|+|||||||+++.+++.++.+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5999999999999999999999998776543
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.92 E-value=1.5e-05 Score=65.28 Aligned_cols=36 Identities=36% Similarity=0.570 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
..+..++|.|||||||||+++.++..+...++.++.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 445679999999999999999999988555566654
No 210
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.92 E-value=6e-06 Score=62.75 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
..++|.|+|||||||+++.+++.++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35999999999999999999999998887655
No 211
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.90 E-value=8.2e-05 Score=58.45 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
.++++.|++|+||||++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998776 555554443
No 212
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.88 E-value=5.6e-05 Score=67.11 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=69.6
Q ss_pred hc-CCCCCceEEEEcCCCChHHHHHHHH--HHHh--CCceEEEechhhcc------c---c-------------------
Q 026258 60 RV-GIKPPKGVLLYGPPGTGKTLLARAI--ASNI--DANFLKVVSSAIID------K---Y------------------- 106 (241)
Q Consensus 60 ~~-~~~~~~~vll~G~~GsGKTtl~~~l--a~~l--~~~~~~v~~~~~~~------~---~------------------- 106 (241)
.+ ++.++..++|.||+|||||||++.+ +... +...+.++...... . +
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~ 111 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPD 111 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcc
Confidence 44 4677889999999999999999994 4433 22233333211000 0 0
Q ss_pred --------cchHHHHHHHHHHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 026258 107 --------IGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT 178 (241)
Q Consensus 107 --------~~~~~~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 178 (241)
.-.....+...........|.+|+|||.-.+... ...+......+..++..+.. .++.+|+++
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~it 182 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTT 182 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEE
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEe
Confidence 0012223334444444566789999998765321 22355666777777776643 167889999
Q ss_pred CCCCCC
Q 026258 179 NRPDVL 184 (241)
Q Consensus 179 ~~~~~l 184 (241)
++.+.+
T Consensus 183 H~~~~~ 188 (525)
T 1tf7_A 183 ERIEEY 188 (525)
T ss_dssp ECSSSS
T ss_pred cCCCCc
Confidence 887654
No 213
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.88 E-value=4.7e-05 Score=68.65 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=35.3
Q ss_pred HHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 121 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+....|.++++|| +.+..|......+.+.+..+.. +..+|++||+.+
T Consensus 497 al~~~p~illlDE----------pts~LD~~~~~~i~~~l~~~~~-----~~tvi~itH~~~ 543 (595)
T 2yl4_A 497 ALLKNPKILLLDE----------ATSALDAENEYLVQEALDRLMD-----GRTVLVIAHRLS 543 (595)
T ss_dssp HHHHCCSEEEEEC----------CCSSCCHHHHHHHHHHHHHHHT-----TSEEEEECCCHH
T ss_pred HHHcCCCEEEEEC----------cccCCCHHHHHHHHHHHHHHhc-----CCEEEEEecCHH
Confidence 3446788999999 5666788888888888877642 357888888854
No 214
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.88 E-value=3.4e-05 Score=75.57 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=26.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|+|++|||||||++.+.+..
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4456788899999999999999999998655
No 215
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.87 E-value=3.1e-05 Score=67.52 Aligned_cols=90 Identities=29% Similarity=0.365 Sum_probs=64.3
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEe---------CC----CCCCChhccCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMAT---------NR----PDVLDPALLRPG 192 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt---------~~----~~~l~~~l~~~~ 192 (241)
|.|++|||+|.+ +.+.++.+...+++ .. .+ .+|++| .. +..+++.+++
T Consensus 296 ~~VliIDEa~~l-----------~~~a~~aLlk~lEe----~~-~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHML-----------DIECFTYLHRALES----SI-AP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGC-----------BHHHHHHHHHHTTS----TT-CC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhc-----------CHHHHHHHHHHhhc----cC-CC-EEEEecCCccccccccccccccccCChhHHh--
Confidence 369999999999 56666666555442 12 24 455555 33 6789999999
Q ss_pred CcceEEEcCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhc
Q 026258 193 RLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVS 237 (241)
Q Consensus 193 r~~~~i~l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (241)
||.. +.+++|+.++..++++.+++.... .++.+.+..+++.+
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~--~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGI--NISEEALNHLGEIG 398 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHc
Confidence 9966 699999999999999988764332 46777766666655
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.87 E-value=2e-05 Score=63.21 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEechhh
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 102 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~~ 102 (241)
..+..++|.|+|||||||+++.++..++..++.++.-.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 456679999999999999999999998766666665443
No 217
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.87 E-value=9.9e-06 Score=62.50 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.+..++|.|+|||||||+++.+++.++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345799999999999999999999998887655
No 218
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.87 E-value=8.7e-06 Score=62.30 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
++..++|.|++||||||+++.+++.++.+++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4567999999999999999999999988766543
No 219
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.86 E-value=2e-05 Score=74.32 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 119 GYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 119 ~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..+....|.+|++|| +....+......+..++.. . +..+|++||+...
T Consensus 560 ArAL~~~P~lLLLDE----------PTs~LD~~~~~~l~~~L~~-~------g~tvIivSHdl~~ 607 (986)
T 2iw3_A 560 ARAVLRNADILLLDE----------PTNHLDTVNVAWLVNYLNT-C------GITSITISHDSVF 607 (986)
T ss_dssp HHHHHTTCSEEEEES----------TTTTCCHHHHHHHHHHHHH-S------CSEEEEECSCHHH
T ss_pred HHHHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHh-C------CCEEEEEECCHHH
Confidence 334457899999999 5666788888888888876 2 5678889998543
No 220
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.86 E-value=1.1e-05 Score=60.81 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
++..++|.|++||||||+++.++..++..++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 356799999999999999999999887665543
No 221
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.86 E-value=1e-05 Score=65.04 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
.++|.||+||||||+++.+|+.++..++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 588999999999999999999999888877653
No 222
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.85 E-value=1.2e-05 Score=62.17 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
+..++|.|++||||||+++.+++.++..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 457999999999999999999999987766544
No 223
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.85 E-value=9.4e-06 Score=61.95 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
+..++|.|+|||||||+++.+++.++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45799999999999999999999998776543
No 224
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.85 E-value=1.4e-05 Score=61.65 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
.++..++|.|++||||||+++.++..++..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 345679999999999999999999988765544
No 225
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.84 E-value=1.1e-05 Score=61.38 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
+..++|.|++||||||+++.+++.++..++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 45799999999999999999999988765543
No 226
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.84 E-value=1.1e-05 Score=63.23 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
++..++|.|+|||||||+++.+++.++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 346799999999999999999999998776554
No 227
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.83 E-value=2.9e-05 Score=69.64 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v 97 (241)
+..++|.|+|||||||++.+++..+ +..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3579999999999999999998765 4444433
No 228
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.81 E-value=1.1e-05 Score=63.53 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.+..++|.|++||||||+++.+++.++..++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 346799999999999999999999998776654
No 229
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.80 E-value=1.5e-05 Score=72.83 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHHHhCCCe--EEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 119 GYARDHQPC--IIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 119 ~~~~~~~~~--vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+.+....|. +|++|| +....+......+..++..+.. .+..+|++||+.+
T Consensus 214 ArAL~~~p~~~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 214 ATQIGSRLTGVLYVLDE----------PSIGLHQRDNDRLIATLKSMRD----LGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHTCCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred HHHHhhCCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHH
Confidence 334446666 999999 5666777778888888877642 1578999999854
No 230
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.80 E-value=1.2e-05 Score=60.37 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.++|.|++||||||+++.+++.++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 6999999999999999999999998776544
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.80 E-value=0.00035 Score=60.43 Aligned_cols=73 Identities=22% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc--------------------cccchHHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID--------------------KYIGESARLIREMFGYA 121 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~--------------------~~~~~~~~~~~~~f~~~ 121 (241)
++..+++.|++|+||||++..+|..+ +..+.-+++..+.. .............+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999766 44454444321100 00112233445566667
Q ss_pred HhCCCeEEEEcCcccc
Q 026258 122 RDHQPCIIFMDEIDAI 137 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l 137 (241)
....++++++|....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999998654
No 232
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.80 E-value=1.2e-05 Score=60.09 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.++|.|+|||||||+++.+ +.++.+++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 6899999999999999999 8888877654
No 233
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.80 E-value=1.5e-05 Score=60.68 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
+..++|.|++||||||+++.+++.++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45799999999999999999999998766654
No 234
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.79 E-value=1.1e-05 Score=63.23 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
+..++|.|+|||||||+++.++..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35799999999999999999999998877665
No 235
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.79 E-value=9.2e-05 Score=68.77 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+..++|.||+|+||||+++.++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45567999999999999999999864
No 236
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.79 E-value=1.5e-05 Score=60.57 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
+..++|.|+|||||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999887
No 237
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.78 E-value=2.7e-05 Score=58.88 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEech
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSS 100 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~ 100 (241)
.++..+.|.|++||||||+++.++..+ +.+++.++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 345679999999999999999999987 8888877643
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.78 E-value=1.3e-05 Score=61.42 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
+..++|.|++||||||+++.+++.++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35799999999999999999999998766554
No 239
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.78 E-value=1.4e-05 Score=62.29 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.++|.|+|||||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998877665
No 240
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.78 E-value=1.6e-05 Score=59.39 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.++|.|++||||||+++.+++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999998877644
No 241
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.78 E-value=0.00019 Score=61.89 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccc--------------------ccchHHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK--------------------YIGESARLIREMFGYA 121 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~f~~~ 121 (241)
++..+++.|++|+||||++..+|..+ +..+..+++...... ...............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35679999999999999999999776 445544443211000 0001122233444555
Q ss_pred HhCCCeEEEEcCcccc
Q 026258 122 RDHQPCIIFMDEIDAI 137 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l 137 (241)
....++++++|....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999998654
No 242
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.77 E-value=2.1e-05 Score=61.64 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=28.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceE
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~ 95 (241)
+..+..++|.|||||||+|.++.+++.++.+.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 355667899999999999999999999876654
No 243
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.77 E-value=8.7e-05 Score=62.03 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
|+.++.-++|.|+||+|||+++..+|..+ +.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 67888889999999999999999998764 45555444
No 244
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.77 E-value=8.6e-05 Score=72.56 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
++.+.++..+.|.||+|||||||++.+++...
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44567888999999999999999999987663
No 245
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.77 E-value=0.00018 Score=68.60 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIA 87 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la 87 (241)
+..++|.||+|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5789999999999999999994
No 246
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.77 E-value=1.4e-05 Score=60.50 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=23.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~ 95 (241)
+..++|.|+|||||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999998876
No 247
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.76 E-value=0.00039 Score=60.84 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=25.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+..+..+.|.|++||||||+++.++..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34567789999999999999999999876
No 248
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.76 E-value=1.6e-05 Score=62.01 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.++|.|+|||||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998877665
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.76 E-value=0.00012 Score=63.12 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=34.6
Q ss_pred CCccccccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 28 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 28 ~~~~~~l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
..+++++.-.......+...+. .++..++|.||+||||||++++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4566666433444444444321 3456799999999999999999998884
No 250
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.76 E-value=1.8e-05 Score=61.10 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
+..++|.|++||||||+++.+++.++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456999999999999999999999987666544
No 251
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.75 E-value=0.00016 Score=62.89 Aligned_cols=37 Identities=32% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
|+.++.-++|.|+||+|||+++..+|... +.++..+.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 67888889999999999999999998655 44555554
No 252
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.75 E-value=1.8e-05 Score=63.21 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.++..++|.|+|||||||+++.+++.++..++..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 35678999999999999999999999887766543
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.73 E-value=1.7e-05 Score=59.66 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=24.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCceEE
Q 026258 67 KGVLLYGPPGTGKTLLARAIAS-NIDANFLK 96 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~-~l~~~~~~ 96 (241)
..++|.|+|||||||+++.+++ ..+..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999998 45544443
No 254
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.73 E-value=0.00013 Score=58.74 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH---hCCceEEEech
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN---IDANFLKVVSS 100 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~---l~~~~~~v~~~ 100 (241)
+..++|.|+|||||||+++.++.. .+..++.++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 457999999999999999999987 57777645443
No 255
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.72 E-value=3.1e-05 Score=61.26 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.+..++|.|++||||||+++.+++.++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 345799999999999999999999998776654
No 256
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.71 E-value=1.3e-05 Score=62.84 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
.+..++|.|+|||||||+++.+++.++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999876544
No 257
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.71 E-value=8.9e-05 Score=72.44 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=37.6
Q ss_pred HHHHHhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 026258 118 FGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVL 184 (241)
Q Consensus 118 f~~~~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~l 184 (241)
++.+....|.+|++|| +++..|......+.+.+..... +..+|++||+.+.+
T Consensus 1182 iARal~~~p~iLiLDE----------pTs~lD~~~~~~i~~~l~~~~~-----~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1182 IARALVRQPHILLLDE----------ATSALDTESEKVVQEALDKARE-----GRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHHHHHCCSSEEEES----------CSSSCCHHHHHHHHHHHHHHSS-----SSCEEEECSCTTGG
T ss_pred HHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHhCC-----CCEEEEEecCHHHH
Confidence 3444446788999999 4666788888888888876532 56788889986643
No 258
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.71 E-value=2.9e-05 Score=61.91 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
.+..++|.||+||||||+++.+++.++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 35689999999999999999999988765443
No 259
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.71 E-value=4e-05 Score=59.09 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechh
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSA 101 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~ 101 (241)
.++..+.|.|++||||||+++.++..+ +...+.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 456789999999999999999999988 44434555433
No 260
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.71 E-value=2.9e-05 Score=60.45 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
.++|.|||||||+|.++.+++.++.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999876544
No 261
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.71 E-value=1.9e-05 Score=63.37 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
+..+.|.|++||||||+++.+++.++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 678999999999999999999999998877654
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.70 E-value=2.8e-05 Score=57.86 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=27.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++..+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4556778889999999999999999999987
No 263
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.70 E-value=3.1e-05 Score=60.69 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
..+.|.|++||||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999988866544
No 264
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2.7e-05 Score=59.09 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
..+..+.|.||+|+|||||++.++....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3456799999999999999999998763
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=0.00013 Score=56.21 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
..+..+.|.|++||||||+++.++..+ +..+...+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 455679999999999999999999876 55555544
No 266
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.66 E-value=4.4e-05 Score=58.71 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCceEEEe
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI-DANFLKVV 98 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l-~~~~~~v~ 98 (241)
.+..+.|.|++||||||+++.+++.+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999998 46666654
No 267
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.65 E-value=0.00012 Score=66.98 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=33.8
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
|.+|++|| ++...+......+..++..+... +..+|++||+.+
T Consensus 565 p~llllDE----------Pt~~LD~~~~~~i~~~l~~l~~~----g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDE----------PTTGLHVDDIARLLDVLHRLVDN----GDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEES----------TTTTCCHHHHHHHHHHHHHHHHT----TCEEEEECCCHH
T ss_pred CcEEEEeC----------CCCCCCHHHHHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence 57999999 56677888888888888876431 578999999864
No 268
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.63 E-value=5.5e-05 Score=57.59 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
.+.|.|++||||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999999988 78877765
No 269
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.63 E-value=4.9e-05 Score=60.95 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
++..+.|.||+||||||+++.+++.++..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 44679999999999999999999999876543
No 270
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.63 E-value=4.4e-05 Score=59.49 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.++|.|+|||||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998777665
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.62 E-value=3.8e-05 Score=59.11 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++..+.|.||+||||||+++.++...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456679999999999999999999875
No 272
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.62 E-value=3.6e-05 Score=64.59 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 36 GLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 36 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
..++.++.+.+.+...+. -....+++|+|++|+||||+++++++.++.+++.
T Consensus 3 ~~~~L~~~il~~l~~~i~---------~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE---------DNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT---------TCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc---------cCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 445566666666543211 1223469999999999999999999999877643
No 273
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.62 E-value=2.7e-05 Score=60.13 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.+.|.|++||||||+++.+++ ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 876665544
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.62 E-value=6.7e-05 Score=58.23 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.++..+.|.||+|||||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5567899999999999999999998875
No 275
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.62 E-value=4.2e-05 Score=58.73 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
.+.|.|++||||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 58999999999999999999999876543
No 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.62 E-value=0.00029 Score=66.87 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 026258 35 GGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 35 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
+|.++.+++|.+.+... .....+.|+|+.|+||||||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999999988531 22457999999999999999999853
No 277
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.61 E-value=4.1e-05 Score=63.52 Aligned_cols=34 Identities=35% Similarity=0.561 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
..++|+||+||||||+++.+|+.++..++..|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4699999999999999999999999888887643
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.61 E-value=3.3e-05 Score=59.51 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+.++..+.|.||+||||||+++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3556789999999999999999999876
No 279
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.61 E-value=5.1e-05 Score=60.13 Aligned_cols=31 Identities=35% Similarity=0.613 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
+..+.|.||+||||||+++.+++.++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999876644
No 280
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.61 E-value=0.00044 Score=63.90 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+..++|.||+|+||||+++.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5679999999999999999998643
No 281
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.61 E-value=0.00012 Score=58.04 Aligned_cols=32 Identities=34% Similarity=0.371 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
..++++||+|+|||.++..++...+..++.+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 35999999999999999999888766655554
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.58 E-value=4e-05 Score=60.06 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=24.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+.++..+.|.||+|+|||||++.++...
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445677889999999999999999999876
No 283
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.57 E-value=5.9e-05 Score=59.24 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.++|.|+|||||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 589999999999999999999998765544
No 284
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.56 E-value=0.0001 Score=69.58 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=26.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+..+..+.|.||+|+|||||++.++..+
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445677889999999999999999998755
No 285
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.56 E-value=0.00041 Score=61.16 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=30.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEe
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVV 98 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~ 98 (241)
|+.++.-++|.|+||+|||+++..+|... +.+++.++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 67788889999999999999999998765 34565555
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.55 E-value=5.2e-05 Score=58.80 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
+.++..+.|.||+|||||||+++++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46677899999999999999999998773
No 287
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.55 E-value=2.9e-05 Score=60.13 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
.+..++|.|++||||||+++.+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999987544
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.54 E-value=3.9e-05 Score=58.35 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.++|.|+|||||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999886
No 289
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.54 E-value=7.8e-05 Score=56.94 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
.+.|.|++||||||+++.+++.+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 48899999999999999999998 88776554
No 290
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.52 E-value=4.9e-05 Score=58.44 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
..+.|.|++||||||+++.++..++.+++..|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 34889999999999999999998887766544
No 291
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=6.3e-05 Score=58.15 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
..+..++|.|||||||||+++.++..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999998874
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.52 E-value=0.00028 Score=70.04 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=62.7
Q ss_pred HHHHhcCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhc----------------ccccchHHHH
Q 026258 56 ELFLRVGI---KPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAII----------------DKYIGESARL 113 (241)
Q Consensus 56 ~~~~~~~~---~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~----------------~~~~~~~~~~ 113 (241)
.+...+|. .+++.+.|+||+|||||||+..++.+. +.....++...-. -..+...+..
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~ 1497 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 1497 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHH
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHH
Confidence 44455553 456779999999999999988776443 6666666643222 1245556777
Q ss_pred HHHHHHHHHhCCCeEEEEcCcccccCCCC
Q 026258 114 IREMFGYARDHQPCIIFMDEIDAIGGRRF 142 (241)
Q Consensus 114 ~~~~f~~~~~~~~~vl~lDe~d~l~~~~~ 142 (241)
+..+...++...++++++|-+..|.....
T Consensus 1498 l~~~~~~~~s~~~~~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1498 LEICDALARSGAVDVIVVDSVAALTPKAE 1526 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCTTT
T ss_pred HHHHHHHHHcCCCCEEEEccHHhCCcccc
Confidence 77778888889999999999999987653
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.52 E-value=4.2e-05 Score=59.20 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCceEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI-DANFLK 96 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l-~~~~~~ 96 (241)
.++..+.|.|++||||||+++.+++.+ +..++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 455679999999999999999999876 444443
No 294
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.52 E-value=5.8e-05 Score=58.32 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.+.|.|++||||||+++.+++ +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 588999999999999999997 77766543
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.52 E-value=6.7e-05 Score=57.95 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
+..++|.|+|||||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4579999999999999999999988763
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.51 E-value=5.9e-05 Score=57.92 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.+..+.|.|++||||||+++.+++. +.+++..+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 3457999999999999999999987 76655443
No 297
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=5.5e-05 Score=58.33 Aligned_cols=27 Identities=33% Similarity=0.632 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
++..+.|.||+|+|||||++.+++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356799999999999999999998763
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.51 E-value=6.9e-05 Score=61.77 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=29.9
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCce
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~ 94 (241)
.+.+.++..+.|+||+|+|||||++.+++.+...+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 55678889999999999999999999998874333
No 299
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.51 E-value=6.5e-05 Score=58.20 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.++..+.|.||+||||||+++.++..++..+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34567999999999999999999998873333333
No 300
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=7.7e-05 Score=57.53 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
+....+..+.|.||+|+|||||++.+++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445677899999999999999999998764
No 301
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.50 E-value=4.1e-05 Score=59.40 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
.+..++|.|++||||||+++.+++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999998743
No 302
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.49 E-value=8.4e-05 Score=57.25 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEe
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVV 98 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~ 98 (241)
.+.|.|++||||||+++.+++.++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999997776544
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=6.5e-05 Score=58.33 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
++..+.|.||+|+||||+++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999988743
No 304
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.48 E-value=0.0004 Score=59.49 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=34.6
Q ss_pred HHhCCC--eEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 121 ARDHQP--CIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 121 ~~~~~~--~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
+....| .+|+|||. +...+......+..++..+.. +..||++||+++
T Consensus 309 ~l~~~~~~~~LlLDEp----------t~~LD~~~~~~l~~~L~~l~~-----~~~vi~itH~~~ 357 (415)
T 4aby_A 309 STVLGADTPSVVFDEV----------DAGIGGAAAIAVAEQLSRLAD-----TRQVLVVTHLAQ 357 (415)
T ss_dssp HHHHCCSSSEEEESST----------TTTCCHHHHHHHHHHHHHHTT-----TSEEEEECSCHH
T ss_pred HHHhCCCCCEEEEECC----------CCCCCHHHHHHHHHHHHHHhC-----CCEEEEEeCcHH
Confidence 333566 89999995 444588888888888887741 567888998864
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.48 E-value=0.00016 Score=54.83 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC---CceEEEec
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVS 99 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~---~~~~~v~~ 99 (241)
.++..++|.|++||||||+++.++..++ ..+..++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4567899999999999999999998874 33445543
No 306
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.46 E-value=6.2e-05 Score=62.71 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
+..++|.||+|||||+|+..+|+.++..++..|.-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 357999999999999999999999998888777553
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.46 E-value=7.1e-05 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998764
No 308
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.46 E-value=0.00012 Score=60.23 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=25.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+.++..+.|.||+|+||||+++.+|..+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567789999999999999999999876
No 309
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.45 E-value=0.0003 Score=53.95 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEE
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKV 97 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v 97 (241)
.+.-.+++|+.|+||||.+..+++.. +..+..+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 34578999999999999888888766 4444443
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.45 E-value=8.8e-05 Score=59.10 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.3
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
++.+.++..+.|.||+||||||+++.++..++..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3445667779999999999999999999987643
No 311
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.44 E-value=0.00012 Score=57.03 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=26.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
+..+.|.|++||||||+++.++. ++.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45799999999999999999997 77665544
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.43 E-value=9e-05 Score=56.40 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
..++|.||+|+||||+++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35889999999999999999986644
No 313
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.41 E-value=0.00014 Score=57.45 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
..+..+.|.|++||||||+++.+++.++.+++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3456799999999999999999999998766543
No 314
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.39 E-value=0.00011 Score=57.67 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.++..+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567799999999999999999998764
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.39 E-value=0.00021 Score=57.12 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc--------eEEEechhhc
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDAN--------FLKVVSSAII 103 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~--------~~~v~~~~~~ 103 (241)
.+..+.|.|++||||||+++.++..++.+ +..+++..+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34569999999999999999999988876 3355555554
No 316
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.37 E-value=0.00016 Score=60.91 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=25.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+.++..+.|.||+|+||||+++.++..+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34567789999999999999999999876
No 317
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.36 E-value=0.00015 Score=59.61 Aligned_cols=35 Identities=34% Similarity=0.599 Sum_probs=29.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
+.-++|.||+|||||+|+..+|+.++..++..|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45688999999999999999999998877776643
No 318
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.36 E-value=0.00015 Score=59.77 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
.-++|.||+|||||+|+..+|+.++..++..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4688999999999999999999998777666543
No 319
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.36 E-value=0.00017 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
+.++|.||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999988763
No 320
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.34 E-value=0.00081 Score=51.52 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=25.2
Q ss_pred CceEEEEcCCCChHH-HHHHHHHHHh--CCceEEEe
Q 026258 66 PKGVLLYGPPGTGKT-LLARAIASNI--DANFLKVV 98 (241)
Q Consensus 66 ~~~vll~G~~GsGKT-tl~~~la~~l--~~~~~~v~ 98 (241)
+.-.+++||.|+||| .|++++.+.. +..++.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 456899999999999 6888887654 55666655
No 321
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.34 E-value=0.00012 Score=61.11 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
..++|.||+||||||+++.++..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368999999999999999999999876666553
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.33 E-value=6.5e-05 Score=59.21 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=19.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHH-HHh
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIA-SNI 90 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la-~~l 90 (241)
+.+.++..+.|.||+||||||+++.++ ...
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344567789999999999999999999 765
No 323
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.32 E-value=0.00019 Score=55.89 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
..+.|.|++||||||+++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4699999999999999999999998776554
No 324
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.31 E-value=0.0018 Score=60.06 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=36.1
Q ss_pred CCCccccccchHHHHHHHHHHhhcccC--ChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 026258 27 GNVSYSAVGGLSDQIRELRESIELPLM--NPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 27 ~~~~~~~l~g~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
+..+|+++.-.++..+.+.+.-..|.. ...+... +..+..+++.||+|||||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345677765455555555544433431 1222221 223467999999999999977777544
No 325
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.30 E-value=0.00013 Score=64.36 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=43.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEechh-hcc----------c-ccchHHHHHHHHHHHHHhCCCeEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSA-IID----------K-YIGESARLIREMFGYARDHQPCII 129 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~~-~~~----------~-~~~~~~~~~~~~f~~~~~~~~~vl 129 (241)
..+.+++|.||+||||||++++++..+.. ..+.+.... +.. . ..+.....+......+....|+++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 34567999999999999999999987743 344443221 100 0 000000112234445566789999
Q ss_pred EEcCcc
Q 026258 130 FMDEID 135 (241)
Q Consensus 130 ~lDe~d 135 (241)
++.|+-
T Consensus 338 ivgEir 343 (511)
T 2oap_1 338 IVGEVR 343 (511)
T ss_dssp EESCCC
T ss_pred EeCCcC
Confidence 999973
No 326
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.30 E-value=0.00017 Score=56.01 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC----CceEEEec
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVS 99 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~----~~~~~v~~ 99 (241)
.++..++|.|++||||||+++.+++.++ .+++.++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4567899999999999999999998774 44666653
No 327
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.29 E-value=0.00087 Score=54.99 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEec
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVS 99 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~~ 99 (241)
++..++|.|++|+||||++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46689999999999999999999766 334544443
No 328
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.27 E-value=0.00015 Score=59.00 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=25.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
+..+.|.|++||||||+++.++ .++.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4569999999999999999999 577665443
No 329
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.25 E-value=0.00023 Score=60.15 Aligned_cols=74 Identities=15% Similarity=0.300 Sum_probs=45.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCC--ceEEEech-hh-----ccc--ccc-h-------HHHHHHHHHHHHHh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSS-AI-----IDK--YIG-E-------SARLIREMFGYARD 123 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l~~--~~~~v~~~-~~-----~~~--~~~-~-------~~~~~~~~f~~~~~ 123 (241)
.+.++..++|.||+||||||++++++..... ..+.++.. .+ ... +.. . .....+..+..+..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR 250 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence 3456778999999999999999999987743 23333311 11 000 110 0 11123445555666
Q ss_pred CCCeEEEEcCcc
Q 026258 124 HQPCIIFMDEID 135 (241)
Q Consensus 124 ~~~~vl~lDe~d 135 (241)
..|+.++++|+.
T Consensus 251 ~~pd~~l~~e~r 262 (361)
T 2gza_A 251 MKPTRILLAELR 262 (361)
T ss_dssp SCCSEEEESCCC
T ss_pred cCCCEEEEcCch
Confidence 788999999964
No 330
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.24 E-value=0.00013 Score=59.05 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=35.2
Q ss_pred CCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 124 HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 124 ~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
..|.+|++|| +....+......+..++..+.. .+..+|++|++.+.
T Consensus 181 ~~p~lLlLDE----------Pts~LD~~~~~~l~~~l~~l~~----~g~tviivtHd~~~ 226 (267)
T 2zu0_C 181 LEPELCILDE----------SDSGLDIDALKVVADGVNSLRD----GKRSFIIVTHYQRI 226 (267)
T ss_dssp HCCSEEEEES----------TTTTCCHHHHHHHHHHHHTTCC----SSCEEEEECSSGGG
T ss_pred hCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHh----cCCEEEEEeeCHHH
Confidence 5678999999 5666788888888888876632 25678889988653
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.24 E-value=0.00021 Score=59.12 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
+..+..+.|.||+|||||||++.++..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45677899999999999999999998774
No 332
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.22 E-value=0.00014 Score=59.62 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCceEE
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI-DANFLK 96 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l-~~~~~~ 96 (241)
..++|.|+|||||||+++.++..+ +..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 468999999999999999999864 544443
No 333
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.21 E-value=0.0014 Score=59.11 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+..+++.|+|||||||++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4579999999999999988877554
No 334
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.20 E-value=0.0028 Score=53.76 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=64.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCceEEEechh-------hc---------ccccchHHHH-------
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI-----DANFLKVVSSA-------II---------DKYIGESARL------- 113 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l-----~~~~~~v~~~~-------~~---------~~~~~~~~~~------- 113 (241)
.+.++..++|.||+|+|||+|++.+++.+ +..++.+-+.. +. +.........
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999998865 33333332221 10 0000111111
Q ss_pred --HHHHHHHHHhCCCeEEEEcCcccccCC--------CCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 026258 114 --IREMFGYARDHQPCIIFMDEIDAIGGR--------RFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRP 181 (241)
Q Consensus 114 --~~~~f~~~~~~~~~vl~lDe~d~l~~~--------~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~ 181 (241)
+.+.|. ......+|++|++.++... +..+..+........+.++++........+.+..|.|.--+
T Consensus 250 lt~AEyfr--d~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~ 325 (422)
T 3ice_A 250 IEKAKRLV--EHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 325 (422)
T ss_dssp HHHHHHHH--HTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCS
T ss_pred HHHHHHHH--hcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEec
Confidence 111122 2344568899998877421 11123445555555666666543322345567777766443
No 335
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.19 E-value=0.0013 Score=56.82 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCcccccCCCCCC-CCCccHHHHHHHHHHHHHhcCC-----CCCCCeEEEEEe----CCC
Q 026258 112 RLIREMFGYARDHQPCIIFMDEIDAIGGRRFSE-GTSADREIQRTLMELLNQLDGF-----DQLGKVKMIMAT----NRP 181 (241)
Q Consensus 112 ~~~~~~f~~~~~~~~~vl~lDe~d~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~-----~~~~~~~vI~tt----~~~ 181 (241)
...+.....+.. .+++++||+|.+....... .+.+....|+.+..+++.-... ....++.+|+++ +++
T Consensus 239 ~~~~~ai~~ae~--~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 239 ELKQKAIDAVEQ--NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHHH--HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHHHhcc--CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 333444444422 2599999999997654321 1122233677888887742100 122478889887 345
Q ss_pred CCCChhccCCCCcceEEEcCCCCHHHHHHHHH---H-hHc-------CccCCCCCCHHHHHHHhhh
Q 026258 182 DVLDPALLRPGRLDRKIEIPLPNEQSRMEILK---I-HAA-------GIAKHGEIDYEAVVKLAEV 236 (241)
Q Consensus 182 ~~l~~~l~~~~r~~~~i~l~~p~~~~r~~il~---~-~~~-------~~~~~~~~~~~~l~~~~~~ 236 (241)
.++.+.+++ ||...+.|+.++.++..+|+. . +.+ .....-.++.+++..+++.
T Consensus 317 ~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~ 380 (444)
T 1g41_A 317 SDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEA 380 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred hhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHH
Confidence 556688998 999899999999999999993 1 111 1122224567777777764
No 336
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.19 E-value=0.0018 Score=50.35 Aligned_cols=33 Identities=9% Similarity=-0.089 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
+.-.+++|+.|+||||.+..++... +..++.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3456789999999999888887665 55555554
No 337
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.16 E-value=0.0026 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++++.+|+|+|||.++...+...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999887776543
No 338
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.15 E-value=0.00034 Score=55.21 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
..+..+.|.|++||||||+++.+++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567799999999999999999999986
No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.14 E-value=0.00024 Score=54.70 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEEEech
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS 100 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~ 100 (241)
+..++|.||+|+|||+++..+++... .++..|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 46799999999999999999998765 55554433
No 340
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.14 E-value=0.00066 Score=55.52 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
..+..+.|.|++||||||+++.++..++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44567999999999999999999988753
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.12 E-value=0.00034 Score=59.63 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
..++|.||+|||||+|+..++..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458899999999999999999999877766543
No 342
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.11 E-value=0.00075 Score=51.14 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCceEEEechh
Q 026258 69 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSA 101 (241)
Q Consensus 69 vll~G~~GsGKTtl~~~la~~l~~~~~~v~~~~ 101 (241)
++++|++|||||++++.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999987 77888887654
No 343
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.10 E-value=0.0017 Score=57.09 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
.+..++|.|++|+||||++..++..+ +..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35679999999999999999999766 455555554
No 344
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.09 E-value=0.0025 Score=53.24 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 62 GIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 62 ~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+..+..+.|.|+||+|||||+++++..+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 35667789999999999999999999765
No 345
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.09 E-value=0.00018 Score=61.93 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
+.-++|+|+|||||||+++.++..++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568999999999999999999988765544
No 346
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.09 E-value=0.00046 Score=53.29 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
..+.|.|++||||||+++.+|+.++.+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 469999999999999999999999999875
No 347
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.08 E-value=0.00024 Score=55.21 Aligned_cols=25 Identities=44% Similarity=0.505 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
++..+.|.||+|||||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999975
No 348
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.08 E-value=0.0055 Score=47.50 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=33.2
Q ss_pred CCCCccccccchHHHHHHHHHHhhccc--CChHHHHhcCCCCCceEEEEcCCCChHHHH-HHHHHH
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIELPL--MNPELFLRVGIKPPKGVLLYGPPGTGKTLL-ARAIAS 88 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~vll~G~~GsGKTtl-~~~la~ 88 (241)
++..+|+++.-.+...+.+.+.-.... .+...... +..+.++++.+|+|+|||.. +-.+..
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP--IIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 445678887555555566554321000 01111111 12346799999999999986 333333
No 349
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.07 E-value=0.00091 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+.|.|++|+|||||++++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 350
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.05 E-value=0.00052 Score=54.12 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
..+.|.|+|||||||+++.+++.++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4589999999999999999999998876654
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.05 E-value=0.00084 Score=55.35 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
..+..+.|.||+||||||+++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556799999999999999999999776
No 352
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.04 E-value=0.00091 Score=55.67 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++..+.|.||+|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 353
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.04 E-value=0.0016 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...++|.|++|+|||||+.++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 356999999999999999999853
No 354
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.01 E-value=0.0057 Score=50.05 Aligned_cols=90 Identities=21% Similarity=0.164 Sum_probs=51.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhcc----------------cc---c-chHHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIID----------------KY---I-GESARLIREMFGYA 121 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~----------------~~---~-~~~~~~~~~~f~~~ 121 (241)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... .. . .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999776 44444444311000 00 0 01112223445555
Q ss_pred HhCCCeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHh
Q 026258 122 RDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQL 163 (241)
Q Consensus 122 ~~~~~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 163 (241)
....++++++|+.-.+ +.+......+..+...+
T Consensus 177 ~~~~~D~viiDtpp~~---------~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL---------QIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHTCCEEEEECCCCS---------SCCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCCCCc---------cccHHHHHHHHHHhhhc
Confidence 5456789999996333 22444445555554443
No 355
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.00 E-value=0.00018 Score=55.73 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+.|.|++||||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 356
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.00 E-value=0.00048 Score=56.77 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++..+.|.||+||||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999876
No 357
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.99 E-value=0.0039 Score=47.66 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=17.9
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLL-ARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl-~~~la~~ 89 (241)
+.++++.+|+|+|||.. +..+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999986 3334443
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.99 E-value=0.00052 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
..+|+||+|+||||++++++..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999999999999987653
No 359
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.99 E-value=0.0021 Score=52.70 Aligned_cols=72 Identities=19% Similarity=0.098 Sum_probs=45.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEechhhccc--------------------ccchHHHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVSSAIIDK--------------------YIGESARLIREMFGYAR 122 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~f~~~~ 122 (241)
+..+++.|++|+||||++..+|..+ +..+..+++.-.... ........+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999776 455555543211100 00011222334555555
Q ss_pred hCCCeEEEEcCcccc
Q 026258 123 DHQPCIIFMDEIDAI 137 (241)
Q Consensus 123 ~~~~~vl~lDe~d~l 137 (241)
....+++++|-...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 567789999986554
No 360
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.99 E-value=0.0016 Score=48.51 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
+..+.|.|++|+|||||++.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.98 E-value=0.00052 Score=56.93 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+..+.|.||+||||||+++.++..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344699999999999999999998875
No 362
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.96 E-value=0.0021 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~ 88 (241)
...++|.|.+|+|||||+.++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 35699999999999999999974
No 363
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.96 E-value=0.00068 Score=61.11 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
.+..++|.|.+||||||+++.+++.+ +.+++.++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 45679999999999999999999998 888888763
No 364
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.96 E-value=0.0012 Score=60.11 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHH
Q 026258 37 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 87 (241)
Q Consensus 37 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la 87 (241)
++++++++..++.. ....+|.||||||||+++-.+.
T Consensus 191 N~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp CHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHH
Confidence 67888888877742 2368999999999998544443
No 365
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.95 E-value=0.00045 Score=55.94 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++.|.||+|+|||||+++++...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999765
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.91 E-value=0.00058 Score=57.66 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=25.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCc
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDAN 93 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~ 93 (241)
+..+.|.||+|||||||++.+++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999987654
No 367
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.91 E-value=0.00096 Score=43.16 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 201 PLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 201 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
|.|+.++|.+||+.+++......+++++.|+..+++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~S 38 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 38 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCC
Confidence 68999999999999999998888999999999998764
No 368
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.89 E-value=0.015 Score=44.92 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=31.2
Q ss_pred CccccccchHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 026258 29 VSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 29 ~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~ 88 (241)
.+|+++.-.++..+.+.+.--. +. .+...... +..+.++++.+|+|+|||..+-..+.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH--HHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCchhhhhhHHHH
Confidence 4677765455555555542110 10 00111111 11245799999999999986655443
No 369
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.88 E-value=0.00077 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
...+.|.|++|+||||+++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999875
No 370
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.88 E-value=0.002 Score=60.65 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=33.0
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
|.++++|| ++.+.+......+..++..+... +..||+++|+.+
T Consensus 827 p~LLILDE----------PTsGLD~~~~~~L~~lL~~L~~~----G~TVIvI~HdL~ 869 (916)
T 3pih_A 827 RTLYILDE----------PTVGLHFEDVRKLVEVLHRLVDR----GNTVIVIEHNLD 869 (916)
T ss_dssp SEEEEEES----------TTTTCCHHHHHHHHHHHHHHHHT----TCEEEEECCCHH
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhc----CCEEEEEeCCHH
Confidence 57999999 56777888888888888776421 467888898854
No 371
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.88 E-value=0.00026 Score=57.96 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=24.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CceEEEechhh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNID---ANFLKVVSSAI 102 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~---~~~~~v~~~~~ 102 (241)
+.-+.|.|++||||||+++.++..++ ..+..+++..+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 34689999999999999999998775 33444554444
No 372
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.87 E-value=0.001 Score=55.16 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=28.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
..++..++|.|++|+||||++..+|..+ +..+.-++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3556779999999999999999999776 44444444
No 373
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00047 Score=60.11 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 60 RVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 60 ~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
++.+..+..+.|.||+|||||||++.++...
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4445678889999999999999999999765
No 374
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.85 E-value=0.0011 Score=57.31 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCce
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~ 94 (241)
+.++..+.|.||+|||||||++.+++......
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 46778899999999999999999999886543
No 375
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.84 E-value=0.0017 Score=52.00 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 026258 68 GVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~ 89 (241)
.++|.|.||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999864
No 376
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.84 E-value=0.0032 Score=54.37 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEec
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVVS 99 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~~ 99 (241)
+..++|.|++|+||||++..+|..+ +..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4579999999999999999999876 344554443
No 377
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.82 E-value=0.00096 Score=55.99 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCceE
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFL 95 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~ 95 (241)
+.++..+.|.||+|+|||||++.+++.......
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 456788999999999999999999998865543
No 378
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.81 E-value=0.0089 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...++|.|.+|+|||||+.++.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999864
No 379
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.80 E-value=0.012 Score=46.16 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=22.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
+.-.+++|+-|+||||.+...+... +..++.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4568889999999998666665444 44444443
No 380
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.78 E-value=0.0012 Score=51.90 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
...+.|.|++||||||+++.+|+.++.+++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3468999999999999999999999998865
No 381
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.0005 Score=51.70 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
.+.|.|++|||||||++.++..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 6899999999999999999988743
No 382
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.0013 Score=50.99 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 34 VGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 34 l~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+.+.++....+...+.. .....++|.|++|+||||++..++..+
T Consensus 11 l~~~~~~~~~~~~~~~~-------------~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRE-------------SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcc-------------cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44555666666555421 234579999999999999999999875
No 383
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.72 E-value=0.003 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 026258 68 GVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~ 89 (241)
.+.|.|++|+|||||++++++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999853
No 384
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.72 E-value=0.0022 Score=51.46 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~ 88 (241)
..++|.|++|+|||||+.++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4699999999999999999985
No 385
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.71 E-value=0.0042 Score=53.65 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCceEEEechhhccccc--------------------chHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI----DANFLKVVSSAIIDKYI--------------------GESARLIREMFGY 120 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l----~~~~~~v~~~~~~~~~~--------------------~~~~~~~~~~f~~ 120 (241)
++..+++.|++|+||||++-.+|..+ +..+.-+++.-...... ......+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998766 45555555432111000 0112222445555
Q ss_pred HHhCCCeEEEEcCcccc
Q 026258 121 ARDHQPCIIFMDEIDAI 137 (241)
Q Consensus 121 ~~~~~~~vl~lDe~d~l 137 (241)
+.....++++||-...+
T Consensus 179 ~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhCCCCEEEEECCCcc
Confidence 55556789999986443
No 386
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.70 E-value=0.00064 Score=60.56 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC----CceEEEechh
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSSA 101 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~----~~~~~v~~~~ 101 (241)
..+..+.|.|++||||||+++++++.++ ..+..++...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4567899999999999999999999885 2344455433
No 387
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.70 E-value=0.0012 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+.|.|++||||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 388
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.70 E-value=0.015 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
....+.|.|+||+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999998775
No 389
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.69 E-value=0.0011 Score=52.48 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
+..+.|.|++||||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999999984
No 390
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.67 E-value=0.0013 Score=51.32 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+..+.|.|++|+||||+++.+++.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999998883
No 391
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.0038 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..++|.|++|+|||||++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 392
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.67 E-value=0.00095 Score=57.41 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.5
Q ss_pred hcCCCCCce--EEEEcCCCChHHHHHHHHHHH
Q 026258 60 RVGIKPPKG--VLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 60 ~~~~~~~~~--vll~G~~GsGKTtl~~~la~~ 89 (241)
++.+.++.. +.|.|++|+|||||++++++.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 444566777 999999999999999999865
No 393
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.66 E-value=0.00096 Score=50.68 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+.|.|++|+|||||++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999754
No 394
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.65 E-value=0.001 Score=50.73 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+.|.|++|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999975
No 395
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.63 E-value=0.017 Score=45.32 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=30.6
Q ss_pred CCCCccccccchHHHHHHHHHHhhc-cc-CChHHHHhcCCCCCceEEEEcCCCChHHHHH
Q 026258 26 PGNVSYSAVGGLSDQIRELRESIEL-PL-MNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 83 (241)
Q Consensus 26 ~~~~~~~~l~g~~~~~~~l~~~l~~-~~-~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~ 83 (241)
.+..+|+++.=.++..+.+.+.=-. +. .+...... +..+.++++.+|+|+|||..+
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP--CIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHTTCCEEECCCSSHHHHHHH
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--HhCCCCEEEECCCCCcHHHHH
Confidence 4556788875445555555432110 10 00111111 123467999999999999763
No 396
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.63 E-value=0.0012 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
.+.+++|.|++|+||||++..+...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3578999999999999999999864
No 397
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.003 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
....+++.|++|+|||||+..++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998653
No 398
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.62 E-value=0.0013 Score=48.26 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.-.+|+||+|+|||+++.+++-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998655
No 399
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.62 E-value=0.0017 Score=58.09 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CceEEEech
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNID----ANFLKVVSS 100 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~----~~~~~v~~~ 100 (241)
.+..++|.|.+||||||+++.+++.++ .+++.++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 345689999999999999999999886 667776643
No 400
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.014 Score=43.84 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..++|.|++|+|||||++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 401
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.61 E-value=0.0012 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+..+.|.|++|+||||+++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999887
No 402
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.59 E-value=0.00057 Score=52.52 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
+.+..+..+.|.|++|+|||||++.++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44566778999999999999999998753
No 403
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.59 E-value=0.0015 Score=51.82 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+..+.|.|++||||||+++.++..+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999887
No 404
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.58 E-value=0.0024 Score=59.56 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=33.7
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDV 183 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~~ 183 (241)
|.++++|| ++.+.+......+..++..+... +..||+++|+.+.
T Consensus 752 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~~~----G~tVIvisHdl~~ 795 (842)
T 2vf7_A 752 GTVYVLDE----------PTTGLHPADVERLQRQLVKLVDA----GNTVIAVEHKMQV 795 (842)
T ss_dssp CEEEEEEC----------TTTTCCHHHHHHHHHHHHHHHHT----TCEEEEECCCHHH
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEcCCHHH
Confidence 79999999 66777888888888888776421 5678888887543
No 405
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.57 E-value=0.00061 Score=54.70 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.++..+.|.|++||||||+++.+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456799999999999999999999883
No 406
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.57 E-value=0.00082 Score=52.88 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKV 97 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~v 97 (241)
.++..+.|.|+.||||||+++.++.. +..+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 45667999999999999999999977 4444433
No 407
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.57 E-value=0.0014 Score=56.18 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...+.|.||+|+|||||+++++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 347999999999999999999973
No 408
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.56 E-value=0.0028 Score=49.48 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCce
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDANF 94 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~~~ 94 (241)
.+..+.|.|++|+||||+++.+++.++..+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 456799999999999999999999997643
No 409
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.56 E-value=0.0038 Score=54.27 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+..++|+|++|+|||+|++.++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45679999999999999999887654
No 410
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.56 E-value=0.015 Score=46.24 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...++|.|++|+|||||+..+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999753
No 411
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.56 E-value=0.013 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...+.|.|.||+|||||+.++...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 345999999999999999999853
No 412
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.53 E-value=0.0074 Score=56.99 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.0
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
|.++++|| ++.+.+......+..++..+... +..||+++++.+
T Consensus 885 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~~~----G~TVIvisHdl~ 927 (993)
T 2ygr_A 885 RTVYILDE----------PTTGLHFDDIRKLLNVINGLVDK----GNTVIVIEHNLD 927 (993)
T ss_dssp SEEEEEES----------TTTTCCHHHHHHHHHHHHHHHHT----TCEEEEECCCHH
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEcCCHH
Confidence 58999999 56777888888888888776421 567888888754
No 413
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.52 E-value=0.0044 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+.|.|+||+|||||+++++..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999863
No 414
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.51 E-value=0.0015 Score=50.70 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCceEEEec
Q 026258 68 GVLLYGPPGTGKTLLARAIASNIDANFLKVVS 99 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~~~~~~v~~ 99 (241)
.+.|.|..||||||+++.++. +|.+++..|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 599999999999999999997 8888876654
No 415
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.017 Score=43.25 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 416
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.50 E-value=0.019 Score=47.92 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 63 IKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 63 ~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
...+..+.|.|++|+||||++..++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3556779999999999999999998765
No 417
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.49 E-value=0.0017 Score=56.78 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 61 VGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 61 ~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+.+.+ ..+.|.||+|||||||+++++...
T Consensus 25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 34566 789999999999999999999876
No 418
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.49 E-value=0.0028 Score=55.80 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
.+..++|.|.+||||||+++++++.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3467999999999999999999999975
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.49 E-value=0.0037 Score=48.50 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
...++|.|.+|+|||||+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 420
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.48 E-value=0.012 Score=47.02 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
....+++.|.+|+|||||+.++...-
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44679999999999999999998543
No 421
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.48 E-value=0.0031 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+.++++.|++|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 422
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.47 E-value=0.01 Score=50.23 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=16.0
Q ss_pred CceEEEEcCCCChHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~ 84 (241)
+.++++.+|+|+|||..+-
T Consensus 77 ~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp TCCEEECCCSCSSSHHHHH
T ss_pred CCCEEEECCCCCcccHHHH
Confidence 4579999999999998643
No 423
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.46 E-value=0.0042 Score=58.45 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=33.2
Q ss_pred CeEEEEcCcccccCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 026258 126 PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPD 182 (241)
Q Consensus 126 ~~vl~lDe~d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt~~~~ 182 (241)
|.++++|| ++.+.+......+..++..+... +..||+++++.+
T Consensus 867 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~~~----G~TVIvisHdl~ 909 (972)
T 2r6f_A 867 RTLYILDE----------PTTGLHVDDIARLLDVLHRLVDN----GDTVLVIEHNLD 909 (972)
T ss_dssp CEEEEEEC----------TTTTCCHHHHHHHHHHHHHHHHT----TCEEEEECCCHH
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhC----CCEEEEEcCCHH
Confidence 58999999 66777888888888888776421 567888888754
No 424
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.44 E-value=0.0032 Score=57.02 Aligned_cols=38 Identities=29% Similarity=0.513 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 37 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 37 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++++..+...+. ....+|.||||||||+++..++..+
T Consensus 182 n~~Q~~av~~~l~----------------~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ----------------RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHHT----------------CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc----------------CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5666666665552 2368999999999999877776544
No 425
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.44 E-value=0.0022 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
....++|.|++|+|||||+..++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999754
No 426
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.43 E-value=0.002 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 026258 68 GVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~ 89 (241)
.+++.|++|+|||||++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 427
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.43 E-value=0.0021 Score=42.40 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=35.4
Q ss_pred cCCCCHHHHHHHHHHhHcCccCCCCCCHHHHHHHhhhcc
Q 026258 200 IPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEVSR 238 (241)
Q Consensus 200 l~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (241)
-.+|+.++|.+||+.+++......++|++.|+..|++++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~S 46 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS 46 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 368999999999999999998888999999999998775
No 428
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.42 E-value=0.0018 Score=47.40 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.41 E-value=0.0035 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
+..++++|.||+||||+++.+++.++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346899999999999999999998843
No 430
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.40 E-value=0.0025 Score=49.99 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
..+..+.|.|++||||||+++.+++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34667999999999999999999987754
No 431
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.40 E-value=0.004 Score=53.73 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=19.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~ 88 (241)
...-.++.|+||||||+++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 345578999999999999988764
No 432
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.39 E-value=0.0018 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~ 88 (241)
..+.|.|++|+|||||++.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 433
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.022 Score=45.47 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.8
Q ss_pred CceEEEEcCCCChHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~ 84 (241)
+.++++.+|+|+|||..+.
T Consensus 91 ~~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 91 GRDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp TCCCEECCCTTSCHHHHHH
T ss_pred CCcEEEEccCCCCchHHHH
Confidence 3579999999999998643
No 434
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.37 E-value=0.0016 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 026258 68 GVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~ 88 (241)
.++|.|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 435
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.36 E-value=0.0025 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
+..+.|.|++|+||||.++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999887
No 436
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.36 E-value=0.0028 Score=46.60 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
....+++.|++|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999753
No 437
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.35 E-value=0.0023 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+++.|++|+|||||+..+...-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 438
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.33 E-value=0.014 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...++|.|++|+|||||+..++..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999754
No 439
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.32 E-value=0.021 Score=43.48 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.7
Q ss_pred CceEEEEcCCCChHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~ 84 (241)
+.++++.+|+|+|||..+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3679999999999997544
No 440
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.31 E-value=0.016 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
.++++.+|+|+|||..+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 58999999999999976554433
No 441
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.29 E-value=0.0032 Score=46.67 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~ 88 (241)
.....+++.|++|+|||||++.+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999999975
No 442
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.29 E-value=0.0024 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+++.|++|+|||||++.+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998653
No 443
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.29 E-value=0.0026 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+++.|++|+|||||++.+...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998543
No 444
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.28 E-value=0.0026 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 445
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.28 E-value=0.0027 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+++.|++|+|||||++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998654
No 446
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.27 E-value=0.0017 Score=56.67 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=23.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
+..+++.|.||+||||+++.+++.++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999988753
No 447
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.26 E-value=0.0028 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 448
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.25 E-value=0.0025 Score=46.99 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999743
No 449
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.25 E-value=0.06 Score=47.19 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=18.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
+.++++.+|+|+|||..+-..+..
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHH
Confidence 357999999999999876555533
No 450
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.23 E-value=0.0029 Score=46.91 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
...+++.|++|+|||||++.+...-
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999998643
No 451
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.23 E-value=0.003 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 452
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.21 E-value=0.0028 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999853
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.21 E-value=0.0092 Score=51.35 Aligned_cols=34 Identities=29% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCceEEEe
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNI---DANFLKVV 98 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l---~~~~~~v~ 98 (241)
++..+.+.|++|+||||++..+|..+ +..+.-++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 45678899999999999999999877 34444444
No 454
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.21 E-value=0.017 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.5
Q ss_pred CceEEEEcCCCChHHHHH-HHHH
Q 026258 66 PKGVLLYGPPGTGKTLLA-RAIA 87 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~-~~la 87 (241)
+.++++.||+|||||..+ ..+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999975 4343
No 455
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.20 E-value=0.0031 Score=46.08 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 456
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.20 E-value=0.0029 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+..+.|.|++|+|||||+++++....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 345799999999999999999996554
No 457
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0035 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
....+++.|++|+|||||++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999864
No 458
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.18 E-value=0.022 Score=44.22 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.3
Q ss_pred CCceEEEEcCCCChHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~ 84 (241)
.+.++++.+|+|+|||..+.
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 35679999999999998543
No 459
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.17 E-value=0.038 Score=42.31 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..++|.|++|+|||||++.+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 460
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.17 E-value=0.0035 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 026258 68 GVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l 90 (241)
.+++.|++|+|||+|++.+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 461
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.16 E-value=0.0059 Score=50.45 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..++|.|++|+||||+++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 368999999999999999999754
No 462
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.16 E-value=0.0034 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 463
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.15 E-value=0.011 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~ 88 (241)
..++|.|.||+|||||+..+++
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4699999999999999999964
No 464
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.15 E-value=0.049 Score=42.28 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=17.2
Q ss_pred CceEEEEcCCCChHHH-HHHHHH
Q 026258 66 PKGVLLYGPPGTGKTL-LARAIA 87 (241)
Q Consensus 66 ~~~vll~G~~GsGKTt-l~~~la 87 (241)
+.-.+++|+-|+|||| |++.+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999 555543
No 465
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.003 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~ 88 (241)
..+++.|++|+|||||++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999985
No 466
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.13 E-value=0.0039 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
...+.|.|+||+|||||+++++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999754
No 467
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.13 E-value=0.093 Score=47.67 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCceEE
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIASNIDANFLK 96 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~~l~~~~~~ 96 (241)
..+..+++.||+|||||+.+-..+.+-+...+.
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLV 262 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLV 262 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEE
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEE
Confidence 346779999999999998655444333433333
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.12 E-value=0.0039 Score=48.08 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
+...+|+||+|+||||++.++.-.++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356899999999999999999876644
No 469
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.12 E-value=0.0033 Score=46.11 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 026258 68 GVLLYGPPGTGKTLLARAIA 87 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la 87 (241)
.+++.|++|+|||||++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
No 470
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.12 E-value=0.0058 Score=56.85 Aligned_cols=38 Identities=29% Similarity=0.513 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhcccCChHHHHhcCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 026258 37 LSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 37 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
.++++..+...+. ....+|.||||||||+++..++..+
T Consensus 358 n~~Q~~Av~~~l~----------------~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ----------------RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CHHHHHHHHHHHT----------------SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc----------------CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666666665542 2368999999999999877776544
No 471
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.11 E-value=0.0029 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 026258 68 GVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l 90 (241)
-++|+||+|+||||++.+++-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
No 472
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.11 E-value=0.0036 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..++|.|++|+|||||++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 473
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.10 E-value=0.0043 Score=46.75 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
....+++.|++|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999753
No 474
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.10 E-value=0.0042 Score=46.88 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...+++.|++|+|||||+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 475
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.09 E-value=0.0014 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 026258 68 GVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 68 ~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+.|.||+||||||++++++..+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 367889999999999999998774
No 476
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.09 E-value=0.0036 Score=51.40 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASNID 91 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~l~ 91 (241)
.+..+.|.||+|+|||||+++++ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 35679999999999999999999 654
No 477
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.09 E-value=0.0036 Score=46.39 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...+++.|++|+|||||++.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999865
No 478
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.08 E-value=0.0048 Score=46.22 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 026258 65 PPKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 65 ~~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
....+++.|++|+|||||++.++..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999854
No 479
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.07 E-value=0.0039 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+++.|++|+|||||++.+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 480
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.07 E-value=0.0043 Score=47.00 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q 026258 64 KPPKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 64 ~~~~~vll~G~~GsGKTtl~~~la~ 88 (241)
.....+++.|++|+|||+|++.+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4556799999999999999999863
No 481
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.06 E-value=0.0038 Score=45.67 Aligned_cols=22 Identities=50% Similarity=0.782 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~ 88 (241)
..+++.|++|+|||||++.+.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3699999999999999999863
No 482
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.004 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..++|.|++|+|||||++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 483
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.04 E-value=0.0038 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIAS 88 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~ 88 (241)
...+++.|++|+|||||++.++.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999986
No 484
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.04 E-value=0.0037 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...+++.|++|+|||||++.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999743
No 485
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.04 E-value=0.0038 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 486
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.03 E-value=0.019 Score=45.19 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.0
Q ss_pred CceEEEEcCCCChHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLAR 84 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~ 84 (241)
+.++++.+|+|+|||....
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 4679999999999998643
No 487
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.03 E-value=0.0042 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+++.|++|+|||||+..+...-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998643
No 488
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.02 E-value=0.0041 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 026258 67 KGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..+++.|++|+|||||+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 489
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.02 E-value=0.0043 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 490
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.01 E-value=0.0097 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+.|.|.||+|||||+.++...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999853
No 491
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.00 E-value=0.0031 Score=51.72 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNIDA 92 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l~~ 92 (241)
+..+.|.||+|+|||||+++++.....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 457899999999999999999976543
No 492
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.00 E-value=0.0038 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 493
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.99 E-value=0.0041 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...+++.|++|+|||||++.++..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 494
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.99 E-value=0.015 Score=51.99 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=20.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
..++++++++|+|||..+-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 3568999999999999877776554
No 495
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.99 E-value=0.0044 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56999999999999999999864
No 496
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.98 E-value=0.0041 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 026258 67 KGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 67 ~~vll~G~~GsGKTtl~~~la~~ 89 (241)
..+++.|++|+|||||++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 497
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0045 Score=45.88 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
...+++.|++|+|||||++.+...-
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3469999999999999999998643
No 498
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.98 E-value=0.093 Score=43.74 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.0
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAI 86 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~l 86 (241)
+.++++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 378999999999999865433
No 499
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.97 E-value=0.0054 Score=45.56 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASN 89 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~ 89 (241)
...+++.|++|+|||||++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999854
No 500
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.96 E-value=0.0046 Score=46.07 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 026258 66 PKGVLLYGPPGTGKTLLARAIASNI 90 (241)
Q Consensus 66 ~~~vll~G~~GsGKTtl~~~la~~l 90 (241)
...++|.|++|+|||||++.+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3469999999999999999998653
Done!