Query 026259
Match_columns 241
No_of_seqs 159 out of 281
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.1 7.8E-12 2.7E-16 91.7 0.9 25 1-25 36-60 (64)
2 2ba2_A D12_ORF131, hypothetica 72.0 12 0.00039 28.8 6.5 43 73-118 33-75 (85)
3 3uun_A Dystrophin; triple heli 71.7 20 0.00069 25.6 7.6 55 90-144 40-94 (119)
4 3uul_A Utrophin; spectrin repe 66.8 20 0.00069 25.8 6.8 55 91-145 41-95 (118)
5 2kes_A Synphilin-1; synphillin 63.5 7.2 0.00025 26.8 3.4 24 83-106 15-42 (48)
6 4fla_A Regulation of nuclear P 55.6 84 0.0029 25.7 9.8 70 72-141 75-144 (152)
7 3ok8_A Brain-specific angiogen 55.0 72 0.0025 27.9 9.2 67 72-141 71-146 (222)
8 1nkd_A ROP; atomic resolution 30.1 28 0.00096 25.4 2.2 26 81-106 36-62 (65)
9 3tul_A Cell invasion protein S 22.9 1.1E+02 0.0038 25.6 4.8 60 76-150 30-98 (158)
10 3kdq_A Uncharacterized conserv 22.0 1E+02 0.0034 25.3 4.4 61 71-146 3-66 (154)
11 2ykt_A Brain-specific angiogen 21.9 3.9E+02 0.013 23.1 9.5 69 71-142 72-149 (253)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.13 E-value=7.8e-12 Score=91.71 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.9
Q ss_pred CcccCCCCchHHHHHHHhhhhhhcc
Q 026259 1 MRTMGVKGLTLYHLKSHLQKYRLGK 25 (241)
Q Consensus 1 lRLMGVkGLTLYHLKSHLQKYRLgK 25 (241)
|++|||+|||++||||||||||+..
T Consensus 36 l~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 36 LDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999964
No 2
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=72.02 E-value=12 Score=28.76 Aligned_cols=43 Identities=40% Similarity=0.385 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026259 73 QVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 118 (241)
Q Consensus 73 qI~EALrmQmEVQrRLhEQLEvQR~LQlRIEaQGkYLq~iLEKAqe 118 (241)
.|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+.
T Consensus 33 kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 33 VVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777665444444555 88899999999999988875443
No 3
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=71.65 E-value=20 Score=25.64 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHHHHh
Q 026259 90 EQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKV 144 (241)
Q Consensus 90 EQLEvQR~LQlRIEaQGkYLq~iLEKAqe~La~~~~~~~glEaak~eLseL~s~v 144 (241)
.|++-.+.|+--|+++..-+..|.+.+++-+.....++.....-+..+.+|...-
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw 94 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRW 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3444455666688888899999999998887754443333334456666666543
No 4
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=66.84 E-value=20 Score=25.75 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHHHHhh
Q 026259 91 QLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVS 145 (241)
Q Consensus 91 QLEvQR~LQlRIEaQGkYLq~iLEKAqe~La~~~~~~~glEaak~eLseL~s~v~ 145 (241)
|++-.+.|+--|+++..-+..|.+.+++-+.....++.....-+..|.+|...-.
T Consensus 41 ~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~ 95 (118)
T 3uul_A 41 QFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWE 95 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHH
Confidence 3444556666888899999999999988876544333333445666777766544
No 5
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=63.53 E-value=7.2 Score=26.77 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=18.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHh
Q 026259 83 EVQRRLHEQ----LEVQRRLQLRIEAQG 106 (241)
Q Consensus 83 EVQrRLhEQ----LEvQR~LQlRIEaQG 106 (241)
.+=|.|+|| +-+|.+||.-+|+|.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778888 558889988888873
No 6
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=55.58 E-value=84 Score=25.68 Aligned_cols=70 Identities=24% Similarity=0.233 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026259 72 YQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 141 (241)
Q Consensus 72 ~qI~EALrmQmEVQrRLhEQLEvQR~LQlRIEaQGkYLq~iLEKAqe~La~~~~~~~glEaak~eLseL~ 141 (241)
-.|.||..+--|-..||-.+++=.+.|.--+++=..|.+..|.++.+.+..+..-..-+...|.+|-...
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888888899999999999999999999999999999999999999888766566666666655533
No 7
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=54.95 E-value=72 Score=27.87 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026259 72 YQVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 141 (241)
Q Consensus 72 ~qI~EALrmQmEVQrRLhEQLEv---------QR~LQlRIEaQGkYLq~iLEKAqe~La~~~~~~~glEaak~eLseL~ 141 (241)
-.|.+||.-=-|+||+|..+||. =..|+.+||...||++....+=+.. +.....++|.+.+||-.+.
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e---~k~~~~~leK~~~elkK~~ 146 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIE---YRHRAANLEKCMSELWRME 146 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHhh
Confidence 46888885545999999999884 3579999999999998765544433 3334456787777776665
No 8
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=30.11 E-value=28 Score=25.39 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 026259 81 QMEVQRRLHEQLE-VQRRLQLRIEAQG 106 (241)
Q Consensus 81 QmEVQrRLhEQLE-vQR~LQlRIEaQG 106 (241)
+-..=-||||+-| ++|+|+.|+++.+
T Consensus 36 ~A~~CE~LHe~AE~L~~~l~~r~~~~~ 62 (65)
T 1nkd_A 36 QADICESLHDHADELYRSCLARFGDDG 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445568999976 8999999998754
No 9
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=22.93 E-value=1.1e+02 Score=25.64 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-------hhhhhhchHHHHHHHHHHHHHhhc
Q 026259 76 EALRVQMEVQRRLHEQL--EVQRRLQLRIEAQGKYLQSILEKACKALND-------QAIVAAGLEAAREELSELAIKVSN 146 (241)
Q Consensus 76 EALrmQmEVQrRLhEQL--EvQR~LQlRIEaQGkYLq~iLEKAqe~La~-------~~~~~~glEaak~eLseL~s~v~~ 146 (241)
++.+-+||.|..-|||| |-| +.|+.||++-.. ++++-.-+..+...|.++..+++.
T Consensus 30 a~~~am~~sqqq~~eqlS~eFq---------------tal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~ 94 (158)
T 3tul_A 30 AVWQAMIESQKEMGIQVSKEFQ---------------TALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQS 94 (158)
T ss_dssp HHHHHHHHHHHHHTC--CCTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc
Confidence 67788899999998886 333 555555554433 334444445555555555555555
Q ss_pred CCCC
Q 026259 147 DCQG 150 (241)
Q Consensus 147 ~c~~ 150 (241)
--|+
T Consensus 95 L~P~ 98 (158)
T 3tul_A 95 LDPA 98 (158)
T ss_dssp C---
T ss_pred CCCC
Confidence 4343
No 10
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=22.05 E-value=1e+02 Score=25.31 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=37.7
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hhh-hhhhhhchHHHHHHHHHHHHHhhc
Q 026259 71 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKA--LND-QAIVAAGLEAAREELSELAIKVSN 146 (241)
Q Consensus 71 ~~qI~EALrmQmEVQrRLhEQLEvQR~LQlRIEaQGkYLq~iLEKAqe~--La~-~~~~~~glEaak~eLseL~s~v~~ 146 (241)
+|.++|||..--++|||++ +|+-||..--++ ||- -+. -+.--.-++..-.+|..|..+++.
T Consensus 3 ~MKLAEAL~lRadl~kri~-------qL~~ri~~n~~v--------QEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~ 66 (154)
T 3kdq_A 3 AMYLAEALAQRVEAQRRYS-------ELNQLLLDVAKV--------QEGDQPAENPHEILTELEELTTRINDLVRRINR 66 (154)
T ss_dssp CCBHHHHHHHHHHHHHHHH-------HHHHHHHHTTEE--------ETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH-------HHHHHHHhcCee--------cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999994 466677654211 110 000 000012355667788888888774
No 11
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=21.89 E-value=3.9e+02 Score=23.14 Aligned_cols=69 Identities=25% Similarity=0.366 Sum_probs=44.1
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhchHHHHHHHHHHH
Q 026259 71 GYQVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELA 141 (241)
Q Consensus 71 ~~qI~EALrmQmEVQrRLhEQLEv---------QR~LQlRIEaQGkYLq~iLEKAqe~La~~~~~~~glEaak~eLseL~ 141 (241)
...|.++|.-=-++||.|..+++. =-.|+-+||+--||+.....+-.+... .....++-+.+++--+.
T Consensus 72 s~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~d~K~v~~~~K~~~~e~k---~~~~~l~K~~~e~~kl~ 148 (253)
T 2ykt_A 72 SKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQR---SKGDALDKCQAELKKLR 148 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HhHhHHHHHHHHHHHHH
Confidence 357889995555888888888881 125899999999999877554333322 12234455544444444
Q ss_pred H
Q 026259 142 I 142 (241)
Q Consensus 142 s 142 (241)
.
T Consensus 149 K 149 (253)
T 2ykt_A 149 K 149 (253)
T ss_dssp H
T ss_pred h
Confidence 3
Done!