Your job contains 1 sequence.
>026262
MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ
QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD
VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG
L
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026262
(241 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 968 2.0e-97 1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 642 6.9e-63 1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 642 6.9e-63 1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 638 1.8e-62 1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 638 1.8e-62 1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 636 3.0e-62 1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 632 7.9e-62 1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 628 2.1e-61 1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 505 2.3e-48 1
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh... 443 8.4e-42 1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp... 443 8.4e-42 1
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 435 5.9e-41 1
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ... 413 1.3e-38 1
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ... 398 4.9e-37 1
GENEDB_PFALCIPARUM|PF14_0256 - symbol:PF14_0256 "exosome ... 361 4.1e-33 1
UNIPROTKB|Q8ILI7 - symbol:PF14_0256 "Exosome complex exon... 361 4.1e-33 1
UNIPROTKB|G4MM07 - symbol:MGG_06785 "Exosome complex exon... 356 1.4e-32 1
UNIPROTKB|Q95Z13 - symbol:RRP41A "Rrp41p homologue" speci... 316 2.4e-28 1
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone... 309 1.3e-27 1
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer... 283 7.6e-25 1
RGD|1309832 - symbol:Exosc6 "exosome component 6" species... 277 3.3e-24 1
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 270 1.8e-23 1
MGI|MGI:1919794 - symbol:Exosc6 "exosome component 6" spe... 267 3.8e-23 1
UNIPROTKB|Q5RKV6 - symbol:EXOSC6 "Exosome complex compone... 264 7.8e-23 1
UNIPROTKB|Q28F19 - symbol:exosc6 "Exosome complex compone... 257 4.3e-22 1
UNIPROTKB|F1S435 - symbol:EXOSC6 "Uncharacterized protein... 255 7.0e-22 1
TIGR_CMR|SO_4256 - symbol:SO_4256 "ribonuclease PH" speci... 220 3.6e-18 1
POMBASE|SPBC211.08c - symbol:SPBC211.08c "exosomal 3'-5' ... 212 2.5e-17 1
TIGR_CMR|GSU_1795 - symbol:GSU_1795 "ribonuclease PH" spe... 211 3.2e-17 1
UNIPROTKB|Q9KVD6 - symbol:rph "Ribonuclease PH" species:2... 208 6.7e-17 1
TIGR_CMR|VC_0210 - symbol:VC_0210 "ribonuclease PH" speci... 208 6.7e-17 1
TIGR_CMR|CBU_0299 - symbol:CBU_0299 "ribonuclease PH" spe... 204 1.8e-16 1
TIGR_CMR|CPS_0112 - symbol:CPS_0112 "ribonuclease PH" spe... 203 2.3e-16 1
TIGR_CMR|CHY_1758 - symbol:CHY_1758 "polyribonucleotide n... 213 2.6e-16 1
ZFIN|ZDB-GENE-060503-675 - symbol:exosc5 "exosome compone... 202 2.9e-16 1
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 198 7.7e-16 1
TIGR_CMR|CHY_0314 - symbol:CHY_0314 "ribonuclease PH" spe... 195 1.6e-15 1
UNIPROTKB|P50849 - symbol:pnp "Polyribonucleotide nucleot... 204 2.3e-15 1
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n... 204 2.4e-15 1
TIGR_CMR|BA_3944 - symbol:BA_3944 "polyribonucleotide nuc... 200 6.2e-15 1
UNIPROTKB|P0CG19 - symbol:rph "RNase PH monomer" species:... 187 1.1e-14 1
UNIPROTKB|E1BAG2 - symbol:EXOSC5 "Uncharacterized protein... 187 1.1e-14 1
TIGR_CMR|SPO_0008 - symbol:SPO_0008 "ribonuclease PH" spe... 187 1.1e-14 1
FB|FBgn0036916 - symbol:Mtr3 "Mtr3" species:7227 "Drosoph... 189 1.4e-14 1
UNIPROTKB|Q9NQT4 - symbol:EXOSC5 "Exosome complex compone... 186 1.4e-14 1
UNIPROTKB|P28619 - symbol:rph "Ribonuclease PH" species:2... 185 1.8e-14 1
TIGR_CMR|BA_4715 - symbol:BA_4715 "ribonuclease PH" speci... 183 3.0e-14 1
RGD|1307861 - symbol:Exosc5 "exosome component 5" species... 183 3.0e-14 1
MGI|MGI:107889 - symbol:Exosc5 "exosome component 5" spec... 181 4.9e-14 1
UNIPROTKB|Q10628 - symbol:rph "Ribonuclease PH" species:1... 177 1.3e-13 1
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 177 1.3e-13 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 185 2.5e-13 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 185 2.5e-13 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 174 1.9e-11 1
UNIPROTKB|Q8IEW0 - symbol:EAP4 "Exosome-associated protei... 160 5.9e-11 1
GENEDB_PFALCIPARUM|PFB0415c - symbol:PFB0415c "hypothetic... 163 1.3e-10 1
UNIPROTKB|O96177 - symbol:PFB0415c "3' exoribonuclease, p... 163 1.3e-10 1
UNIPROTKB|Q0BWM9 - symbol:pnp "Polyribonucleotide nucleot... 169 1.5e-10 1
TAIR|locus:2079429 - symbol:RIF10 "AT3G03710" species:370... 170 1.5e-10 1
FB|FBgn0037815 - symbol:Rrp46 "Rrp46" species:7227 "Droso... 158 1.9e-10 1
TIGR_CMR|ECH_0726 - symbol:ECH_0726 "polyribonucleotide n... 168 2.6e-10 1
TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species... 168 3.5e-10 1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 166 4.0e-10 1
TIGR_CMR|CJE_1390 - symbol:CJE_1390 "polyribonucleotide n... 166 4.2e-10 1
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla... 165 6.0e-10 1
UNIPROTKB|Q2GJV5 - symbol:pnp "Polyribonucleotide nucleot... 165 7.6e-10 1
TIGR_CMR|APH_0767 - symbol:APH_0767 "polyribonucleotide n... 165 7.6e-10 1
TIGR_CMR|DET_1289 - symbol:DET_1289 "ribonuclease PH" spe... 153 1.4e-09 1
TIGR_CMR|NSE_0057 - symbol:NSE_0057 "polyribonucleotide n... 160 3.2e-09 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 159 3.8e-09 1
POMBASE|SPBC115.01c - symbol:rrp46 "exosome subunit Rrp46... 147 6.2e-09 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 157 7.1e-09 1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 157 7.1e-09 1
WB|WBGene00000798 - symbol:crn-5 species:6239 "Caenorhabd... 143 1.5e-08 1
RGD|1307987 - symbol:Pnpt1 "polyribonucleotide nucleotidy... 147 6.1e-08 1
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n... 149 7.2e-08 1
MGI|MGI:1918951 - symbol:Pnpt1 "polyribonucleotide nucleo... 148 1.1e-07 1
WB|WBGene00015266 - symbol:BE0003N10.1 species:6239 "Caen... 147 1.3e-07 1
UNIPROTKB|G3V6G7 - symbol:Pnpt1 "Polyribonucleotide nucle... 147 1.4e-07 1
UNIPROTKB|Q95Z09 - symbol:RRP41B "Rrp41p homologue" speci... 139 1.4e-07 1
UNIPROTKB|F1NU18 - symbol:PNPT1 "Uncharacterized protein"... 142 5.0e-07 1
SGD|S000003327 - symbol:RRP46 "Exosome non-catalytic core... 132 6.2e-07 1
UNIPROTKB|Q8TCS8 - symbol:PNPT1 "Polyribonucleotide nucle... 141 7.3e-07 1
UNIPROTKB|Q5RCW2 - symbol:PNPT1 "Polyribonucleotide nucle... 141 7.3e-07 1
UNIPROTKB|O33325 - symbol:pnp "Polyribonucleotide nucleot... 140 9.3e-07 1
UNIPROTKB|E2QWK2 - symbol:PNPT1 "Uncharacterized protein"... 137 2.2e-06 1
FB|FBgn0039846 - symbol:CG11337 species:7227 "Drosophila ... 136 2.8e-06 1
UNIPROTKB|E1BIQ0 - symbol:PNPT1 "Uncharacterized protein"... 136 2.9e-06 1
UNIPROTKB|G4MSP2 - symbol:MGG_07084 "3' exoribonuclease" ... 96 3.5e-05 2
TAIR|locus:2202705 - symbol:AT1G60080 "AT1G60080" species... 114 0.00023 1
UNIPROTKB|H7BZ02 - symbol:PNPT1 "Polyribonucleotide nucle... 113 0.00078 1
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 197/240 (82%), Positives = 211/240 (87%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
ME+V+PEGLRLDGRR EMRQ+ AE+G V+KADGSAVFEMGNTKVIAAVYGPRE+QNKSQ
Sbjct: 1 MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60
Query: 61 QM-SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
Q +D A+V CEYSMA FSTGDR R+ K DRRSTE+SLVIRQTMEACILT LMP SQIDI
Sbjct: 61 QKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
F+QVLQADGGTRSACINAATLAL DAGIPMRD+ SCSAGYLNSTPLLDLNYVEDSAGG
Sbjct: 120 FLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGA 179
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRR 239
DVTVGILP LDKV+LLQMDAKLP TFE V LA EGCKA+A IREVL ENTKQLE RR
Sbjct: 180 DVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQENTKQLEYRR 239
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 121/241 (50%), Positives = 176/241 (73%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRR 239
+ + +LP ++ LL+MD++L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQEASVSL 243
Query: 240 G 240
G
Sbjct: 244 G 244
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 120/235 (51%), Positives = 175/235 (74%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MD++L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARDVHTLLDRVVRQHVQE 238
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 120/235 (51%), Positives = 175/235 (74%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG++++T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MDA+L + E V++ A + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARAARDVHTVLDRVVRQHVRE 238
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 120/235 (51%), Positives = 175/235 (74%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MDA+L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 120/235 (51%), Positives = 174/235 (74%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MDA+L + E V++ A + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQE 238
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 117/236 (49%), Positives = 173/236 (73%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G RLDGR+ TE+R+++A + A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+A++ C+YSMA FST +R R+P GDR+S+E+SL ++QT EA +LT L PRSQIDI
Sbjct: 64 KSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+V++LQADGG SAC+NAATLAL DAGIPMRD V +CSAG++ TPL DL + E+S GG
Sbjct: 124 YVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVEDTPLADLCHAEESGGGT 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235
+ + +LP + LLQMDA+L + + +M+ A+ CK + + V+ ++ +++
Sbjct: 184 ALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVVRQHLEEV 239
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 118/235 (50%), Positives = 172/235 (73%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQ EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGG +AC+N ATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGIYAACVNVATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MDA+L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAAQAARDVHTVLDRVVRQHVQE 238
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 98/231 (42%), Positives = 150/231 (64%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
+ +S +GLRLDGRRP E+R+++ ++G + DGSA E GNTKV+AAVYGP Q K Q
Sbjct: 6 DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPH--QAKGNQ 63
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
++++ C+YS A FST +R +P+GDR+S E L ++Q + A I + L PRSQIDI+V
Sbjct: 64 T--ESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYV 121
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-PLLDLNYVEDSAGGPD 180
+VLQ DG + +NAATLAL DAGI + + + +C+A S PL D++ E+ +GGP
Sbjct: 122 EVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPK 181
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
+TV LPT +K+ L+M + + V++ A+ GC+ + + + + E+
Sbjct: 182 LTVAALPTAEKIAFLEMSERFHIDHLGTVIETAMAGCREIRDILEAAVKEH 232
>WB|WBGene00007201 [details] [associations]
symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 90/233 (38%), Positives = 141/233 (60%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E ++ S+
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS-SK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R + +GDR+STEIS ++ + E+ ILT PRSQ+DIF
Sbjct: 60 RIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G ++ P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233
VT+ + D+V L+++ +L + VM A C V + V ++ K
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHLK 232
>UNIPROTKB|Q17533 [details] [associations]
symbol:exos-4.1 "Putative exosome complex component RRP41"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 90/233 (38%), Positives = 141/233 (60%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E ++ S+
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS-SK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R + +GDR+STEIS ++ + E+ ILT PRSQ+DIF
Sbjct: 60 RIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G ++ P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233
VT+ + D+V L+++ +L + VM A C V + V ++ K
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADVYECLAVVAQQHLK 232
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 98/232 (42%), Positives = 140/232 (60%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E +S EGLR DGRR EMR + IG +GSA E+GNTKV+ V GP E KS+
Sbjct: 5 EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKA 64
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+D+ V E ++A+FST D ++ K DRR L ++ T E I T L PRSQI +++
Sbjct: 65 RADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYL 124
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDV 181
VLQ DG ++CINA TLAL DAGIP++D V +AG + S LLDLN +E+SA +
Sbjct: 125 HVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW-L 183
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233
TV +L + KV +Q++ + + E VM +AI G + + N ++ + ++ K
Sbjct: 184 TVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSAK 235
>CGD|CAL0002905 [details] [associations]
symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
Uniprot:Q5AMR4
Length = 240
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 92/235 (39%), Positives = 144/235 (61%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
ME SPEGLR+DGRR E+R+ I + +DGS+ E GNTKV+ V GP E +S
Sbjct: 1 MELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRS 60
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
QQ S++A + ++A+FST +R ++ + +RR E+ + +T E ++ +L PR+ I I
Sbjct: 61 QQHSERANIEVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVI 120
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
VQVL DGG +A IN+ TLAL DAGI M D V+ S G + TPLLD+N +E+
Sbjct: 121 NVQVLCQDGGMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTPLLDVNNLEEHDMSC 180
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+TVG++ +K+ L+ ++ K+P + E V+ + I G ++ IRE++ + ++
Sbjct: 181 -LTVGVIGKSEKLALMLLEDKMPLDRLESVLSIGIAG----SHKIRELMDQEVRK 230
>SGD|S000003427 [details] [associations]
symbol:SKI6 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IC]
InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
GermOnline:YGR195W Uniprot:P46948
Length = 246
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 89/236 (37%), Positives = 142/236 (60%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E L ++ ++
Sbjct: 184 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238
>GENEDB_PFALCIPARUM|PF14_0256 [details] [associations]
symbol:PF14_0256 "exosome complex exonuclease
rrp41, putative" species:5833 "Plasmodium falciparum" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 75/238 (31%), Positives = 140/238 (58%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+++++ EG R+DGR+ E R ++ +GN + DG + FE+GNTK+ A + GP N
Sbjct: 4 VQYINDEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGP----N 59
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+ ++ ++ LV+C ++ F+ ++ RK D + EIS IR IL L S+I
Sbjct: 60 EYRRPDEKCLVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEI 119
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG ++A +N LAL DAGI ++ +++ S YL + ++D N E ++G
Sbjct: 120 NIFLYIIERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSG 179
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235
P++T+ I + + + LL+ DA++P + F+ +++ + C V N ++ + EN +L
Sbjct: 180 SPELTLAIDMSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENAIKL 237
>UNIPROTKB|Q8ILI7 [details] [associations]
symbol:PF14_0256 "Exosome complex exonuclease rrp41,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 75/238 (31%), Positives = 140/238 (58%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGN---VAKADGSAVFEMGNTKVIAAVYGPREVQN 57
+++++ EG R+DGR+ E R ++ +GN + DG + FE+GNTK+ A + GP N
Sbjct: 4 VQYINDEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGP----N 59
Query: 58 KSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
+ ++ ++ LV+C ++ F+ ++ RK D + EIS IR IL L S+I
Sbjct: 60 EYRRPDEKCLVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEI 119
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAG 177
+IF+ +++ DGG ++A +N LAL DAGI ++ +++ S YL + ++D N E ++G
Sbjct: 120 NIFLYIIERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNIIVDGNQFEVNSG 179
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235
P++T+ I + + + LL+ DA++P + F+ +++ + C V N ++ + EN +L
Sbjct: 180 SPELTLAIDMSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKLSIKENAIKL 237
>UNIPROTKB|G4MM07 [details] [associations]
symbol:MGG_06785 "Exosome complex exonuclease RRP41"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 EMBL:CM001231
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 SUPFAM:SSF55666
RefSeq:XP_003709504.1 ProteinModelPortal:G4MM07
EnsemblFungi:MGG_06785T0 GeneID:2684958 KEGG:mgr:MGG_06785
Uniprot:G4MM07
Length = 280
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 93/256 (36%), Positives = 136/256 (53%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREV---QNKSQ----- 60
LR+DGRR E+R+ A+I A ADGS+ EMG+TKV+ V GP E Q ++
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 61 --------QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLM 112
S +A V +A FS+ DR ++ +GD+R E+ + + A + THL
Sbjct: 73 TATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLF 132
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--------T 164
S I + VL DG +A INAATLA DAGIPM D V +CSAG +S
Sbjct: 133 QHSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVACSAGSTSSYAAADESAD 192
Query: 165 PLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
PLLDLN E++ P +T L D+V +L ++++ + E ++ +A++GCK V +
Sbjct: 193 PLLDLNQQEETEL-PGLTAATLGATDRVVVLSCESRVQASRLEGMLAVAVDGCKQVREIL 251
Query: 225 REVLLENTKQLECRRG 240
V+ E +Q+ R G
Sbjct: 252 DRVVKERGRQM-IREG 266
>UNIPROTKB|Q95Z13 [details] [associations]
symbol:RRP41A "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 SUPFAM:SSF55666 EMBL:AJ308997
ProteinModelPortal:Q95Z13 IntAct:Q95Z13 STRING:Q95Z13
EuPathDB:TriTrypDB:Tb427.10.7450 EuPathDB:TriTrypDB:Tb927.10.7450
Uniprot:Q95Z13
Length = 252
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/216 (33%), Positives = 119/216 (55%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ 61
E+++P GLRLDGRR E R+L E G ++ DG G + V A VYGPREV N+
Sbjct: 6 EYINPAGLRLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDG 65
Query: 62 MSDQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ + C+ +A F+ G+R R+ + R S +IS + + +L P SQI I
Sbjct: 66 KYNEVTITCDVVVAAFA-GERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHIC 124
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VL+ DG ++ACINAA LAL DA I MRD+V + + G + ++DL E + P
Sbjct: 125 IEVLKQDGSDKAACINAACLALIDASIAMRDVVYTQTVGLIEGFDVVDLTTEEIHSQCPS 184
Query: 181 VTVGIL---PTLDKVTLLQMDAKLPTNTFEDVMQLA 213
+ + + PT + ++ +++L ++++A
Sbjct: 185 ICITVQGHDPT--NIVWMESNSRLAPEVITRLVKVA 218
>ZFIN|ZDB-GENE-050522-362 [details] [associations]
symbol:exosc6 "exosome component 6" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138
ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
Bgee:Q6P0I8 Uniprot:Q6P0I8
Length = 271
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 77/239 (32%), Positives = 130/239 (54%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ-QMS 63
S +G+R +G ++R + A G V++A GSA E GNTK+I +VYGP+E + + + M
Sbjct: 32 SRQGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMK 87
Query: 64 DQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
LV C++ +A FS R +G ++S + +++ + H PRSQID+ V V
Sbjct: 88 TGRLV-CDFRLAPFSCVKRGAWIQGSEER-DLSATLMESLRPGVCLHRYPRSQIDVNVMV 145
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSA----GGP 179
L+ DG + + A++AL DAGI M DIV C+ + L+D +Y E+ G
Sbjct: 146 LENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYG 205
Query: 180 D----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
D VT+ +LP L++V+ L D ++ +T + M+ ++GC + +++ L K+
Sbjct: 206 DNQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKK 264
>ASPGD|ASPL0000013004 [details] [associations]
symbol:AN3812 species:162425 "Emericella nidulans"
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
Length = 265
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 81/230 (35%), Positives = 124/230 (53%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKS----QQMSD 64
LRLDGRR E+R L+A+I + GS+ MGNT ++ +V+GP E + S
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSS 73
Query: 65 QALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
A+V + ++A F++ DR R+ G DR+S I+ +R ++ + T+L P S I I V V
Sbjct: 74 GAVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSV 133
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS--TPLLDLNYVEDSAGGPDV 181
L +DG +A +NA TLAL DAGIPM ++ C+AG S TP +N D DV
Sbjct: 134 LSSDGSVLAAAVNACTLALVDAGIPMPGLLCGCTAGMSGSASTPRDPMNDTLDPL--LDV 191
Query: 182 TVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAI--EGCKAVANYIREVL 228
++ L +T+ A + T+ ED M++++ K +YI +L
Sbjct: 192 SLPEEQELPFLTVATTSAPAVMTDGDEDDMKVSMLTMDSKVHYSYIETML 241
>RGD|1309832 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0045006 "DNA deamination" evidence=IEA;ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0045830 "positive regulation
of isotype switching" evidence=ISO] [GO:0004532 "exoribonuclease
activity" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1309832 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0045006 GeneTree:ENSGT00550000074804
SUPFAM:SSF55666 CTD:118460 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
IPI:IPI00359650 RefSeq:XP_003751927.1 RefSeq:XP_003753157.1
PRIDE:D3ZW38 Ensembl:ENSRNOT00000025179 GeneID:307850
KEGG:rno:307850 UCSC:RGD:1309832 Uniprot:D3ZW38
Length = 272
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 71/236 (30%), Positives = 121/236 (51%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ-------A 66
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + + A
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 67 LVR----CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+R C++ A FS G R R P+G E+ L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL---NSTPLLDLNYVEDSAGGP 179
+L+ G +A + AA LAL DAG+ M D+V C + T LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSEA 209
Query: 180 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+TV ++P L++V LL T ++ D ++L +EGC+ + +++ L+ ++
Sbjct: 210 GLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCLVRAARR 265
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 66/222 (29%), Positives = 113/222 (50%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR + R + G V+ A GSA E GNTKVI +V+GPRE K+ SD +
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRE-SKKAMVYSDVGRLN 92
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
C S NF++ + D + E S ++ + +E I+ P++ +D+F VL++ G
Sbjct: 93 CNVSYTNFASPTLGQGT--DHK--EYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 148
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTL 189
S I+ A+LAL DAGI M D++T+ S + + ++D E+ + +P+
Sbjct: 149 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSR 208
Query: 190 DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
++T L + + T + MQL ++ + +R+ L ++
Sbjct: 209 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQS 250
>MGI|MGI:1919794 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1919794 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 HSSP:Q9UXC2
eggNOG:COG0689 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:AK012102
EMBL:AK088532 EMBL:BC116985 EMBL:BC119082 IPI:IPI00466593
RefSeq:NP_082550.1 UniGene:Mm.24174 UniGene:Mm.334810
ProteinModelPortal:Q8BTW3 SMR:Q8BTW3 IntAct:Q8BTW3 STRING:Q8BTW3
PhosphoSite:Q8BTW3 PaxDb:Q8BTW3 PRIDE:Q8BTW3 GeneID:72544
KEGG:mmu:72544 UCSC:uc009nlp.1 InParanoid:Q8BTW3 NextBio:336459
CleanEx:MM_EXOSC6 Genevestigator:Q8BTW3 Uniprot:Q8BTW3
Length = 273
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 71/237 (29%), Positives = 121/237 (51%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ-------A 66
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + + A
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 67 LVR----CEYSMANFSTGDRMRKPKGDR-RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+R C++ A FS G R R P+G E+ L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSA 149
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL---NSTPLLDLNYVEDSAGG 178
+L+ G +A + AA LAL DAG+ M D+V C + T LLD +E+
Sbjct: 150 LLLEDGGCALAAALTAAALALADAGVEMYDLVVGCGLSLTPGPSPTWLLDPTRLEEEHSA 209
Query: 179 PDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+TV ++P L++V LL T ++ D ++L +EGC+ + +++ L+ ++
Sbjct: 210 AGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCLVRAARR 266
>UNIPROTKB|Q5RKV6 [details] [associations]
symbol:EXOSC6 "Exosome complex component MTR3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0010467 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GO:GO:0045190 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0045006 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
EMBL:AC009060 EMBL:BC052252 IPI:IPI00073602 RefSeq:NP_478126.1
UniGene:Hs.660633 UniGene:Hs.740491 ProteinModelPortal:Q5RKV6
SMR:Q5RKV6 IntAct:Q5RKV6 STRING:Q5RKV6 PhosphoSite:Q5RKV6
DMDM:74736141 PaxDb:Q5RKV6 PeptideAtlas:Q5RKV6 PRIDE:Q5RKV6
Ensembl:ENST00000435634 GeneID:118460 KEGG:hsa:118460
UCSC:uc002eym.1 GeneCards:GC16M070284 HGNC:HGNC:19055 MIM:606490
neXtProt:NX_Q5RKV6 PharmGKB:PA134932096 eggNOG:NOG303282
InParanoid:Q5RKV6 PhylomeDB:Q5RKV6 ChiTaRS:EXOSC6
EvolutionaryTrace:Q5RKV6 GenomeRNAi:118460 NextBio:80292
Bgee:Q5RKV6 CleanEx:HS_EXOSC6 Genevestigator:Q5RKV6 Uniprot:Q5RKV6
Length = 272
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 69/236 (29%), Positives = 120/236 (50%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ-------A 66
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + + A
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 67 LVR----CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+R C++ A F+ G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS---TPLLDLNYVEDSAGGP 179
+L+ G +A + AA LAL DAG+ M D+V C T LLD +E+
Sbjct: 150 LLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAA 209
Query: 180 DVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+TV ++P L++V LL T ++ + ++L +EGC+ + +++ L+ ++
Sbjct: 210 GLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQSLVRAARR 265
>UNIPROTKB|Q28F19 [details] [associations]
symbol:exosc6 "Exosome complex component MTR3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000178 "exosome (RNase
complex)" evidence=ISS] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:CR762221
EMBL:BC136080 RefSeq:NP_001017016.1 UniGene:Str.4704
ProteinModelPortal:Q28F19 SMR:Q28F19 STRING:Q28F19
Ensembl:ENSXETT00000016677 GeneID:549770 KEGG:xtr:549770 CTD:5916
Xenbase:XB-GENE-998313 OMA:LANCHSS Bgee:Q28F19 Uniprot:Q28F19
Length = 270
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 73/240 (30%), Positives = 127/240 (52%)
Query: 4 VSPEGLRLDGRR---PTEMRQLRAEIGNVAKADGSAVFEMGN--TKVIAAVYGPREVQNK 58
+S EG + GRR P+E R + G +++A GSA E G+ TKV+ AV+GPRE
Sbjct: 22 LSEEGGKAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMG 81
Query: 59 SQQMSDQALVRCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQI 117
++ + + C+ A FS G + L +++++E + PR+++
Sbjct: 82 GERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEV 141
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSC--SAGYLNSTPLLDLNYVEDS 175
++V VL+ G A ++ A+LAL DAGI M D+ C S G LLD + E+
Sbjct: 142 IVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGP-GGELLLDPDDDEEE 200
Query: 176 AG-GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
AG G +++ +LPTL++V+ L + + E+ ++L +EGC+ + + + L++ TK+
Sbjct: 201 AGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVLHQCLVKATKR 260
>UNIPROTKB|F1S435 [details] [associations]
symbol:EXOSC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045006 "DNA deamination" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0045006 GeneTree:ENSGT00550000074804 OMA:GRLLCDF
EMBL:CU929739 Ensembl:ENSSSCT00000003013 Uniprot:F1S435
Length = 254
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 69/233 (29%), Positives = 117/233 (50%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQ-------A 66
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + + A
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGTGGEAPA 90
Query: 67 LVR----CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+R C++ A FS G R R P G E++L +++ +E + PR+Q+++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPPGGGEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
+L+ G +A + AA LAL DAGI M D+V C VE+ +T
Sbjct: 150 LLEDGGSALAAALTAAALALADAGIEMYDLVVGC---------------VEEERAAASLT 194
Query: 183 VGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
V ++P L++V LL PT ++ + ++L +EGC+ + +++ L+ ++
Sbjct: 195 VALMPVLNQVAGLLGSGEGGPTESWAEAVRLGLEGCQRLYPVLQQCLVRAARR 247
>TIGR_CMR|SO_4256 [details] [associations]
symbol:SO_4256 "ribonuclease PH" species:211586 "Shewanella
oneidensis MR-1" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:NP_719783.1 ProteinModelPortal:Q8E9L4
SMR:Q8E9L4 GeneID:1171859 KEGG:son:SO_4256 PATRIC:23528152
Uniprot:Q8E9L4
Length = 237
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 74/235 (31%), Positives = 113/235 (48%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R P + R + A A+GS + E G TKV+ V + + Q V
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVP-RFLKGQGQGWV 59
Query: 69 RCEYSMANFSTGDRMRKP--KGDR--RSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST RM + +G + R+ EI +I + + AC+ + + I I V+
Sbjct: 60 TAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVIDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL DA GI P++ ++ + S G N + DL YVE
Sbjct: 120 QADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDLEYVE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
DSA D+ V ++ K+ +Q A+ T E++++L G N IRE++
Sbjct: 180 DSAAETDMNV-VMTETGKIIEIQGTAEGEPFTHEELIELL--GL--AKNSIREIV 229
>POMBASE|SPBC211.08c [details] [associations]
symbol:SPBC211.08c "exosomal 3'-5' exoribonuclease,
PH-like (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISM]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISO]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 Pfam:PF01138
PomBase:SPBC211.08c GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 HSSP:Q9UXC2 eggNOG:COG0689
HOGENOM:HOG000229515 PROSITE:PS01277 KO:K12587 PIR:T50343
RefSeq:NP_596618.1 ProteinModelPortal:Q9P7R3 STRING:Q9P7R3
EnsemblFungi:SPBC211.08c.1 GeneID:2540412 KEGG:spo:SPBC211.08c
OMA:ADANIDC OrthoDB:EOG415KPS NextBio:20801539 Uniprot:Q9P7R3
Length = 257
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 64/221 (28%), Positives = 108/221 (48%)
Query: 20 RQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST 79
R++ ++G KA GS+ FE K+ V GPR +K+ A + CE+ ++ FST
Sbjct: 36 RKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRP--SKTFAFRSSAKLNCEFRLSPFST 93
Query: 80 GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG--TRSACINA 137
R + + S +I + IL HL P+S ID+++QV+++DG T +A I+
Sbjct: 94 SVRQGHVQTVEEKS-YSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLAAAISC 152
Query: 138 ATLALQDAGIPMRDIVTSCSAGYLNSTP--LLDLNYVEDSAGGP--DVTVGILPTLDKVT 193
A+ A+ DA I D+VT S + +T +D +YV++ A V +G + +L VT
Sbjct: 153 ASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDERARAAKGSVVMGYMASLGHVT 212
Query: 194 LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE-VLLENTK 233
+ + + + I+ K I +LLE +K
Sbjct: 213 QVWERGTCSPSRLSFLTEKCIKNAKDTRLVINHALLLEKSK 253
>TIGR_CMR|GSU_1795 [details] [associations]
symbol:GSU_1795 "ribonuclease PH" species:243231
"Geobacter sulfurreducens PCA" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:NP_952845.1 ProteinModelPortal:Q74C79
SMR:Q74C79 GeneID:2686347 KEGG:gsu:GSU1795 PATRIC:22026445
BioCyc:GSUL243231:GH27-1829-MONOMER Uniprot:Q74C79
Length = 238
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 78/239 (32%), Positives = 116/239 (48%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR P +R +R + A+GS + E G+TKV+ V + V
Sbjct: 1 MRSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGG-GWV 59
Query: 69 RCEYSMANFSTGDRMRKP--KGDR--RSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQV 123
EYSM +T R + KG R+ EI +I +++ A LT L RS + I V
Sbjct: 60 TAEYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVL-IDCDV 118
Query: 124 LQADGGTRSACINAATLALQDA-------G----IPMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G +P+R+ V + S G + LLDLNY+
Sbjct: 119 LQADGGTRTASITGAYVALVDAFQWLVSQGTIATLPVREAVAAVSVGIVGGEVLLDLNYI 178
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNT---FEDVMQLAIEGCKAVANYIREVL 228
EDS D+ ++ + + +Q A+ T +D+ LA+ G + + +EVL
Sbjct: 179 EDSRADVDMNF-VMTSSGRFVEVQGTAEAEPFTCAQMDDMRSLAMIGIERLMAIQQEVL 236
>UNIPROTKB|Q9KVD6 [details] [associations]
symbol:rph "Ribonuclease PH" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006401
GO:GO:0008033 GO:GO:0000049 GO:GO:0004540 InterPro:IPR020568
SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666
InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549 KO:K00989
OMA:MLPRATG ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 PIR:D82350 RefSeq:NP_229867.2
ProteinModelPortal:Q9KVD6 SMR:Q9KVD6 DNASU:2614709 GeneID:2614709
KEGG:vch:VC0210 PATRIC:20079464 Uniprot:Q9KVD6
Length = 238
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 69/231 (29%), Positives = 108/231 (46%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R D R ++R ++ A A+GS + E GNTKV+ E + + + V
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNA-SIEEGVPRWLKGQGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +T R R+ K R+ EI +I +++ A + M I + V+
Sbjct: 60 TAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A++AL DA PM+ V + S G L L DL YVE
Sbjct: 120 QADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
DSA D+ V ++ K+ +Q A+ + E +++L K +A+ +
Sbjct: 180 DSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIV 229
>TIGR_CMR|VC_0210 [details] [associations]
symbol:VC_0210 "ribonuclease PH" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006401 GO:GO:0008033 GO:GO:0000049
GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:D82350
RefSeq:NP_229867.2 ProteinModelPortal:Q9KVD6 SMR:Q9KVD6
DNASU:2614709 GeneID:2614709 KEGG:vch:VC0210 PATRIC:20079464
Uniprot:Q9KVD6
Length = 238
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 69/231 (29%), Positives = 108/231 (46%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R D R ++R ++ A A+GS + E GNTKV+ E + + + V
Sbjct: 1 MRPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNA-SIEEGVPRWLKGQGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +T R R+ K R+ EI +I +++ A + M I + V+
Sbjct: 60 TAEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDAGI-----------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A++AL DA PM+ V + S G L L DL YVE
Sbjct: 120 QADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
DSA D+ V ++ K+ +Q A+ + E +++L K +A+ +
Sbjct: 180 DSAADTDMNV-VMTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIV 229
>TIGR_CMR|CBU_0299 [details] [associations]
symbol:CBU_0299 "ribonuclease PH" species:227377 "Coxiella
burnetii RSA 493" [GO:0004540 "ribonuclease activity" evidence=ISS]
[GO:0008033 "tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:NP_819342.2
ProteinModelPortal:Q83EL9 SMR:Q83EL9 PRIDE:Q83EL9 GeneID:1208181
KEGG:cbu:CBU_0299 PATRIC:17929293
BioCyc:CBUR227377:GJ7S-306-MONOMER Uniprot:Q83EL9
Length = 237
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 76/242 (31%), Positives = 115/242 (47%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI---AAVYG-PREVQNKSQQMSD 64
+R R E+R L A+GS + +GNTKVI + V G PR ++N S+
Sbjct: 1 MRPSKRAANELRPLSFTTQFTRYAEGSVLVTLGNTKVICNASIVEGVPRFLKN-----SE 55
Query: 65 QALVRCEYSMANFSTGDRMRKP--KGDR--RSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q + EY M ST RM + +G + R+ EI +I +++ A + L+ I I
Sbjct: 56 QGWLTAEYGMLPRSTHSRMDREASRGKQGGRTVEIQRLIGRSLRAALDLKLLGPYTITID 115
Query: 121 VQVLQADGGTRSACINAATLA-------LQDAGI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A IN + +A LQ GI P++ V + S G P+LDL
Sbjct: 116 CDVIQADGGTRTAAINGSCIAMIEALRHLQRKGILQTDPLKHKVAAVSVGIYKGVPVLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226
+Y EDS D+ V ++ D +Q A+ + ++ LA G K + +E
Sbjct: 176 DYAEDSNAHTDMNV-VMTDNDAFIEIQGTAEGDAFHAKELDALINLARHGIKQIIEKQQE 234
Query: 227 VL 228
L
Sbjct: 235 AL 236
>TIGR_CMR|CPS_0112 [details] [associations]
symbol:CPS_0112 "ribonuclease PH" species:167879
"Colwellia psychrerythraea 34H" [GO:0004549 "tRNA-specific
ribonuclease activity" evidence=ISS] [GO:0042780 "tRNA 3'-end
processing" evidence=ISS] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 RefSeq:YP_266880.1
ProteinModelPortal:Q48AN3 SMR:Q48AN3 STRING:Q48AN3 GeneID:3519509
KEGG:cps:CPS_0112 PATRIC:21463641
BioCyc:CPSY167879:GI48-215-MONOMER Uniprot:Q48AN3
Length = 237
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 73/229 (31%), Positives = 112/229 (48%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAV-YG-PREVQNKSQQMSD 64
+R GR ++R + A+GS + E G+TKVI A V G PR ++ + +
Sbjct: 1 MRPSGRTLGQIRPVTITRQFTTHAEGSVLIEFGDTKVICTATVEVGVPRFLKGQGK---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RMR+ K R+ EIS +I + + A + + + I +
Sbjct: 57 -GWVTAEYGMLPRSTHTRMRREAASGKQSGRTLEISRLIARALRAAVDLKALGENTISVD 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA I P++ ++ + S G P+ DL
Sbjct: 116 CDVIQADGGTRTAAITGACVALVDALNYMRAKDIIKTNPLKHMIAAVSVGIYKGEPVADL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
+Y EDSA D+ V ++ K+ +Q A+ +FE+ MQ +E K
Sbjct: 176 DYPEDSAADTDMNV-VMTDTGKLIEVQGTAEEEPFSFEE-MQAMLELAK 222
>TIGR_CMR|CHY_1758 [details] [associations]
symbol:CHY_1758 "polyribonucleotide
nucleotidyltransferase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0006402 "mRNA catabolic
process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824
RefSeq:YP_360578.1 ProteinModelPortal:Q3ABA6 STRING:Q3ABA6
GeneID:3727728 KEGG:chy:CHY_1758 PATRIC:21276631
BioCyc:CHYD246194:GJCN-1757-MONOMER Uniprot:Q3ABA6
Length = 731
Score = 213 (80.0 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 70/241 (29%), Positives = 117/241 (48%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGP-REVQNKSQQ-MS 63
EG+R+DGR+ E+R + E+G + + GS +F G T+V++ V G +VQ +
Sbjct: 323 EGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGDVQILDDLGIE 382
Query: 64 DQALVRCEYSMANFSTGDRMRKPKGD-RRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
+ Y+ +S G+ +R +G RR + + +E I + I I +
Sbjct: 383 ESKRFMHHYNFPPYSVGE-VRPMRGPGRREIGHGALAERALEPVIPPEEVFPYTIRIVSE 441
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVEDSAGG 178
VL+++G T + +TLAL DAG+P++ V + G + L D+ +ED+ G
Sbjct: 442 VLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVAILTDIQGIEDALGD 501
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAI----EGCKAVANYIREVLLENTKQ 234
D V T D +T LQMD K+ T D++ A+ EG + + EV+ E K+
Sbjct: 502 MDFKVA--GTKDGITALQMDIKIAGVT-RDILTKALAQAREGRMHILGKMLEVISEPRKE 558
Query: 235 L 235
L
Sbjct: 559 L 559
>ZFIN|ZDB-GENE-060503-675 [details] [associations]
symbol:exosc5 "exosome component 5" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-060503-675 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00550000075002
EMBL:BX649594 IPI:IPI00483802 Ensembl:ENSDART00000125931
ArrayExpress:F1REL3 Bgee:F1REL3 Uniprot:F1REL3
Length = 243
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 49/137 (35%), Positives = 77/137 (56%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFS 78
+R+ +E +++ DGS+ F G+T ++A VYGP EV+ S+++ D+A V
Sbjct: 35 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVK-VSKEIYDRATVEVLIQ----- 88
Query: 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAA 138
+M P R+ E +R+T EA +L L PRS + + +QV+ DG S C+NAA
Sbjct: 89 --PKMGLPSVRERARE--QCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAA 144
Query: 139 TLALQDAGIPMRDIVTS 155
+AL DAG+PM + S
Sbjct: 145 CMALMDAGLPMSRLFCS 161
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 58/187 (31%), Positives = 98/187 (52%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR P ++R L + + GSA + G+TKV+AAVYGP+ K++ +++A
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNEN-AEKACFE 63
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEA-CILTHLMPRSQIDIFVQVLQADG 128
+ + G ++ K E +++++T+++ C+LT + P + + +QV+ DG
Sbjct: 64 VIWKPKSGQIG-KVEK--------EYEMILKRTIQSICVLT-VNPNTTTSVIIQVVHDDG 113
Query: 129 GTRSACINAATLALQDAGIPMRDI-VTSCSAGYLNSTPLLDLNYVED---SAGG----PD 180
INAA AL DAGIPM+ + V C N +LD N +E+ +A P+
Sbjct: 114 SLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPN 173
Query: 181 VTVGILP 187
T+ +LP
Sbjct: 174 TTLSVLP 180
>TIGR_CMR|CHY_0314 [details] [associations]
symbol:CHY_0314 "ribonuclease PH" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004549
"tRNA-specific ribonuclease activity" evidence=ISS] [GO:0008033
"tRNA processing" evidence=ISS] InterPro:IPR002381
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_359184.1 ProteinModelPortal:Q3AFA0
SMR:Q3AFA0 STRING:Q3AFA0 GeneID:3726312 KEGG:chy:CHY_0314
PATRIC:21273799 BioCyc:CHYD246194:GJCN-315-MONOMER Uniprot:Q3AFA0
Length = 254
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 70/241 (29%), Positives = 119/241 (49%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R+DGR ++R ++ + A+GS + EMG+T+V+ +V ++ + +
Sbjct: 1 MRIDGREKDQLRTVKITTNYIKHAEGSVLIEMGDTRVVCTATVEDKVPPFAKG-EGKGWI 59
Query: 69 RCEYSMANFSTGDR-MRKP-KGDR--RSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST R +R+ KG + R+ EI +I + + + + + I V+
Sbjct: 60 TAEYGMLPRSTETRNVREATKGRQSGRTLEIQRLIGRALRGVVDLKALGERTLWIDCDVI 119
Query: 125 QADGGTRSACIN----AATLALQ---DAGI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A LAL + GI P++D V + S G ++ +LDLN+ E
Sbjct: 120 QADGGTRTAAITGSFVALALALNKLVEEGILPVIPLKDFVAAVSVGIVDGEEILDLNFEE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233
DS D+ V ++ ++ +Q + T + E++ +L K IRE L+E K
Sbjct: 180 DSKALVDMNV-VMTGSNRFVEVQGTGEEATFSMEELQRLLTLAQKG----IRE-LIELQK 233
Query: 234 Q 234
Q
Sbjct: 234 Q 234
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 204 (76.9 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 71/244 (29%), Positives = 116/244 (47%)
Query: 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAA-VYGPR-EVQN-KSQ 60
++ E +R DGR ++R L +E+G + + GS +F G T+ ++ G +VQ
Sbjct: 310 ITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDGL 369
Query: 61 QMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + Y+ FS G+ MR P RR + + +E I + +
Sbjct: 370 GVEESKRFMHHYNFPQFSVGETGPMRGP--GRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVED 174
+ +VL+++G T A I A+TLA+ DAG+P++ V + G + S T L D+ +ED
Sbjct: 428 LVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDIQGMED 487
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
+ G D V T VT LQMD K L E+ +Q A +G + N + L E+
Sbjct: 488 ALGDMDFKVA--GTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSES 545
Query: 232 TKQL 235
K+L
Sbjct: 546 RKEL 549
>TIGR_CMR|DET_0970 [details] [associations]
symbol:DET_0970 "polyribonucleotide
nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
Length = 720
Score = 204 (76.9 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 67/229 (29%), Positives = 113/229 (49%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA-AVYGPREVQNKSQQMSDQAL 67
+R++GR ++RQL AE G + + GSA+F G+T+V+A G + + +S +
Sbjct: 311 IRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQLDGLSAEDT 370
Query: 68 VR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVL 124
R Y+ A FSTG+ R RR + + + + T P + I + V+
Sbjct: 371 KRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPYT-IRMVADVV 429
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL---NST--PLLDLNYVEDSAGGP 179
+ G T + +++L+L DAG+P++ V S G + N T + D+ +ED+ G
Sbjct: 430 GSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTITDIEGIEDNYGDM 489
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
D V T D +T +Q+D K+ +F DV++ AI K I EV+
Sbjct: 490 DFKVA--GTRDGITAIQVDMKVKGISF-DVIRDAIYQAKEARYTILEVM 535
>TIGR_CMR|BA_3944 [details] [associations]
symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
DNASU:1086877 EnsemblBacteria:EBBACT00000009810
EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
BioCyc:BANT260799:GJAJ-3716-MONOMER
BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
Length = 712
Score = 200 (75.5 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 69/244 (28%), Positives = 116/244 (47%)
Query: 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA-AVYGPR-EVQN-KSQ 60
++ E +R DGR+ E+R L +E+G +++ GS +F G T+ ++ G +VQ
Sbjct: 310 ITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGDVQILDGL 369
Query: 61 QMSDQALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + Y+ +FS G+ MR P RR + + +E I + +
Sbjct: 370 GVEESKRFMHHYNFPSFSVGETRPMRGP--GRREIGHGALGERALEPVIPSEKDFPYTVR 427
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVED 174
+ +VL+++G T A I +TLA+ DAG+P++ V + G + + T L D+ +ED
Sbjct: 428 LVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDIQGMED 487
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
G D V T VT LQMD K L E+ +Q A G + N++ V+ E
Sbjct: 488 HLGDMDFKVA--GTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVIAEP 545
Query: 232 TKQL 235
+L
Sbjct: 546 RTEL 549
>UNIPROTKB|P0CG19 [details] [associations]
symbol:rph "RNase PH monomer" species:83333 "Escherichia
coli K-12" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IDA] [GO:0042780 "tRNA 3'-end
processing" evidence=IDA] [GO:0009022 "tRNA nucleotidyltransferase
activity" evidence=IEA;IDA] [GO:0006399 "tRNA metabolic process"
evidence=EXP] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0004527
EMBL:L10328 GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:V01578 Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336
PROSITE:PS01277 GO:GO:0042780 GO:GO:0004549 KO:K00989 GO:GO:0009022
HAMAP:MF_00564 TIGRFAMs:TIGR01966 EMBL:X72920 PIR:A04470
RefSeq:YP_001491547.1 ProteinModelPortal:P0CG19 SMR:P0CG19
IntAct:P0CG19 EnsemblBacteria:EBESCT00000003143
EnsemblBacteria:EBESCT00000018485 GeneID:948156 KEGG:eco:b3643
PATRIC:32122773 EcoGene:EG10863 BioCyc:EcoCyc:EG10863-MONOMER
BioCyc:MetaCyc:EG10863-MONOMER Uniprot:P0CG19
Length = 228
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 66/219 (30%), Positives = 103/219 (47%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R GR ++R + A+GS + E G+TKV+ E + + Q +
Sbjct: 1 MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWI 59
Query: 69 RCEYSMANFSTGDRMRKP--KGDR--RSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST R + KG + R+ EI +I + + A + + I + VL
Sbjct: 60 TAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVL 119
Query: 125 QADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I A +AL DA G PM+ +V + S G +N + DL YVE
Sbjct: 120 QADGGTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQL 212
DSA D+ V ++ ++ +Q A+ T E+++ L
Sbjct: 180 DSAAETDMNV-VMTEDGRIIEVQGTAEGEPFTHEELLIL 217
>UNIPROTKB|E1BAG2 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0051607 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666 OMA:VRETCEA
GeneTree:ENSGT00550000075002 EMBL:DAAA02047109 IPI:IPI00710844
Ensembl:ENSBTAT00000021338 Uniprot:E1BAG2
Length = 235
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 62/212 (29%), Positives = 104/212 (49%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFS 78
+R E +++ DGSA F G+T V+A VYGP EV+ S+++ ++A + +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKI-SKEIFNKATLEV---ILRPK 83
Query: 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAA 138
TG P +S E +IR T EA +L L PR+ I + +QV+ G + C+NAA
Sbjct: 84 TG----LPGVAEKSRE--RLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAA 137
Query: 139 TLALQDAGIPMRDIVTSCSAGY-LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQM 197
+AL DAG+PMR + + + T +LD ++ +T L ++++ L+
Sbjct: 138 CMALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEARAVLTFA-LDSVERKLLMST 196
Query: 198 DAKLPTNT-FEDVMQLAIEGCKAVANYIREVL 228
L ++T + + A V + RE L
Sbjct: 197 TKGLYSDTELQQCLAAAQTASTHVFRFYRESL 228
>TIGR_CMR|SPO_0008 [details] [associations]
symbol:SPO_0008 "ribonuclease PH" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004549 "tRNA-specific ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_165281.1 HSSP:P28619
ProteinModelPortal:Q5LWF6 SMR:Q5LWF6 GeneID:3193125
KEGG:sil:SPO0008 PATRIC:23373245 Uniprot:Q5LWF6
Length = 237
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 67/207 (32%), Positives = 96/207 (46%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R GR +EMR + E G A+GS + +MG+T V+ V + S V
Sbjct: 1 MRPSGRDLSEMRPVSIETGFTKHAEGSCLIKMGDTHVLCTATIEDRVPPFIKG-SGLGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M +T RMR+ K R+ EI +I + + A + + QI + V+
Sbjct: 60 TAEYGMLPRATNTRMRREAASGKQGGRTVEIQRLIGRALRAGVDRVALGERQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQ-------DAGI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR A I +AL+ AG P+ D V + S G P+LDL+Y E
Sbjct: 120 QADGGTRCASITGGWVALRLAVNKLMKAGDVISDPLVDPVAAVSCGIYAGQPVLDLDYPE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAK 200
DS G D I+ K+ +QM A+
Sbjct: 180 DSEAGVDGNF-IMTGSGKLIEVQMSAE 205
>FB|FBgn0036916 [details] [associations]
symbol:Mtr3 "Mtr3" species:7227 "Drosophila melanogaster"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 EMBL:AE014296 GO:GO:0016787 GO:GO:0010468
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176
GeneTree:ENSGT00550000074804 KO:K12587 FlyBase:FBgn0036916
UniGene:Dm.13639 EMBL:BT030767 RefSeq:NP_649157.1 UniGene:Dm.27179
SMR:Q9VW53 IntAct:Q9VW53 MINT:MINT-905327 STRING:Q9VW53
EnsemblMetazoa:FBtr0074918 GeneID:40173 KEGG:dme:Dmel_CG8025
UCSC:CG8025-RA CTD:40173 InParanoid:Q9VW53 OMA:STAINCC
GenomeRNAi:40173 NextBio:817403 Uniprot:Q9VW53
Length = 326
Score = 189 (71.6 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 67/234 (28%), Positives = 108/234 (46%)
Query: 7 EGLRLDGRRPTEM--RQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
E L R PT++ R G + GSA E GNTKV+A V P+E+ S + +
Sbjct: 33 ESLDKPSREPTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMN 92
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
++ C + A FSTGD P+ +R +S ++ + ME + Q+DI V +L
Sbjct: 93 MGVLNCYVNFAAFSTGDLDSVPERERH---LSSMLTKAMEPVVCRTEFLNFQLDIRVLIL 149
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAG------YLNSTPLLDLNYVEDSAGG 178
DG S IN +AL + GI D++T+ +A +LN + ++ +
Sbjct: 150 DDDGCLLSTAINCCGVALVECGISTYDLITASTACIYRDHVFLNPSAKVEELLWKHRNSS 209
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENT 232
D T P+ + L + A + +TFE + Q G + A Y++ LL+ T
Sbjct: 210 TDSTTS--PSSAQEHGLIITASM--DTFEQIAQCQQCGYLSPATYVK--LLDYT 257
>UNIPROTKB|Q9NQT4 [details] [associations]
symbol:EXOSC5 "Exosome complex component RRP46"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0006364 "rRNA processing" evidence=NAS] [GO:0005737 "cytoplasm"
evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS] [GO:0000178
"exosome (RNase complex)" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0051607
GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 EMBL:AC011462 GO:GO:0006364 GO:GO:0000175
GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AF281134
EMBL:AF285785 EMBL:BC007742 EMBL:BC107696 IPI:IPI00644775
RefSeq:NP_064543.3 UniGene:Hs.283741 ProteinModelPortal:Q9NQT4
SMR:Q9NQT4 DIP:DIP-29846N IntAct:Q9NQT4 MINT:MINT-1479651
STRING:Q9NQT4 PhosphoSite:Q9NQT4 DMDM:14285757 PaxDb:Q9NQT4
PRIDE:Q9NQT4 DNASU:56915 Ensembl:ENST00000221233 GeneID:56915
KEGG:hsa:56915 UCSC:uc002oqo.3 CTD:56915 GeneCards:GC19M041892
HGNC:HGNC:24662 MIM:606492 neXtProt:NX_Q9NQT4 PharmGKB:PA134890468
HOVERGEN:HBG051520 InParanoid:Q9NQT4 KO:K12590 OMA:VRETCEA
OrthoDB:EOG4PZJ7M PhylomeDB:Q9NQT4 EvolutionaryTrace:Q9NQT4
GenomeRNAi:56915 NextBio:62403 Bgee:Q9NQT4 CleanEx:HS_EXOSC5
Genevestigator:Q9NQT4 GermOnline:ENSG00000077348 Uniprot:Q9NQT4
Length = 235
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 61/212 (28%), Positives = 106/212 (50%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFS 78
+R E +++ DGSA F G+T V+A VYGP EV+ S+++ ++A + E +
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK-VSKEIFNKATL--EVILR--- 81
Query: 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAA 138
++ P +S E +IR T EA +L L PR+ I + +QV+ G + C+NAA
Sbjct: 82 --PKIGLPGVAEKSRE--RLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAA 137
Query: 139 TLALQDAGIPMRDIVTSCSAGY-LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQM 197
+AL DAG+PMR + + + T +LD ++ +T L ++++ L+
Sbjct: 138 CMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFA-LDSVERKLLMSS 196
Query: 198 DAKLPTNT-FEDVMQLAIEGCKAVANYIREVL 228
L ++T + + A + V + RE L
Sbjct: 197 TKGLYSDTELQQCLAAAQAASQHVFRFYRESL 228
>UNIPROTKB|P28619 [details] [associations]
symbol:rph "Ribonuclease PH" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0031125 "rRNA 3'-end
processing" evidence=IMP] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008033 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0000049 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0031125 EMBL:Z75208 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 EMBL:M85163 PIR:A44914 RefSeq:NP_390715.1
PDB:1OYP PDB:1OYR PDB:1OYS PDBsum:1OYP PDBsum:1OYR PDBsum:1OYS
ProteinModelPortal:P28619 SMR:P28619
EnsemblBacteria:EBBACT00000001457 GeneID:937463 KEGG:bsu:BSU28370
PATRIC:18977558 GenoList:BSU28370 BioCyc:BSUB:BSU28370-MONOMER
EvolutionaryTrace:P28619 Uniprot:P28619
Length = 245
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 74/247 (29%), Positives = 119/247 (48%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR+ E+R + ++ ++ +GS + GNTKVI V + + +
Sbjct: 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVP-PFLRGGGKGWI 59
Query: 69 RCEYSMANFSTGDR-MRKP-KG--DRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R +R+ KG R+ EI +I + + A + + I I V+
Sbjct: 60 TAEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVI 119
Query: 125 QADGGTRSACINAATLALQ-------DAGI----PMRDIVTSCSAGYLNSTP-LLDLNYV 172
QADGGTR+A I A LA+ AG P+ D + + S G LLDLNY
Sbjct: 120 QADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQGILLDLNYE 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDV---MQLAIEGCKAVANYIREVLL 229
EDS+ D+ V I+ + LQ + T + ED+ + LA +G + + + +EVL
Sbjct: 180 EDSSAEVDMNV-IMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238
Query: 230 ENTKQLE 236
++ +L+
Sbjct: 239 DSLPELK 245
>TIGR_CMR|BA_4715 [details] [associations]
symbol:BA_4715 "ribonuclease PH" species:198094 "Bacillus
anthracis str. Ames" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
RefSeq:NP_846927.1 RefSeq:YP_021364.1 RefSeq:YP_030624.1 PDB:3DD6
PDBsum:3DD6 ProteinModelPortal:Q81LA9 SMR:Q81LA9 IntAct:Q81LA9
DNASU:1088544 EnsemblBacteria:EBBACT00000011295
EnsemblBacteria:EBBACT00000015124 EnsemblBacteria:EBBACT00000023463
GeneID:1088544 GeneID:2815981 GeneID:2851699 KEGG:ban:BA_4715
KEGG:bar:GBAA_4715 KEGG:bat:BAS4377 HOGENOM:HOG000229516 KO:K00989
OMA:MLPRATG ProtClustDB:PRK00173
BioCyc:BANT260799:GJAJ-4434-MONOMER
BioCyc:BANT261594:GJ7F-4584-MONOMER EvolutionaryTrace:Q81LA9
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 Uniprot:Q81LA9
Length = 245
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 58/191 (30%), Positives = 93/191 (48%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R+DGR TE+R + + +GS + E+G+TKVI + V + + V
Sbjct: 1 MRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVP-PFMRGEGKGWV 59
Query: 69 RCEYSMANFSTGDR-MR---KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY+M +T R +R K K R+ EI +I + + A + + + I V+
Sbjct: 60 TAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVI 119
Query: 125 QADGGTRSACINAATLAL-----------QDAGIPMRDIVTSCSAGYLNSTPL-LDLNYV 172
QADGGTR+A I A +A+ + + IP++D + + S G + + LDLNY
Sbjct: 120 QADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYLAATSVGIVEEQGVVLDLNYA 179
Query: 173 EDSAGGPDVTV 183
EDS D+ V
Sbjct: 180 EDSKADVDMNV 190
>RGD|1307861 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
"transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
"DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
Uniprot:F1LSX7
Length = 235
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 51/144 (35%), Positives = 78/144 (54%)
Query: 8 GLRLDGRRPT-EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
G R P +R E +++ DGSA F G+T V+A VYGP EV+ S+++ ++A
Sbjct: 16 GTESSPRSPVCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK-VSKEIFNKA 74
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ E + ++ P +S E +IR T EA +L L PR+ I + +QV+
Sbjct: 75 TL--EVILR-----PKIGLPGVAEKSRE--RLIRNTCEAVVLGALHPRTSITVVLQVVSD 125
Query: 127 DGGTRSACINAATLALQDAGIPMR 150
G + C+NAA +AL DAG+PMR
Sbjct: 126 TGSLLACCLNAACMALVDAGVPMR 149
>MGI|MGI:107889 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:107889 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0051607 GO:GO:0003723 GO:GO:0006401
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0006364 GO:GO:0043928 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 CTD:56915
HOVERGEN:HBG051520 KO:K12590 OMA:VRETCEA OrthoDB:EOG4PZJ7M
EMBL:AK007372 EMBL:AK006475 EMBL:BC034358 IPI:IPI00133532
RefSeq:NP_613052.1 UniGene:Mm.207484 UniGene:Mm.27853
ProteinModelPortal:Q9CRA8 SMR:Q9CRA8 IntAct:Q9CRA8 STRING:Q9CRA8
PhosphoSite:Q9CRA8 PaxDb:Q9CRA8 PRIDE:Q9CRA8
Ensembl:ENSMUST00000079634 GeneID:27998 KEGG:mmu:27998
UCSC:uc009fti.2 GeneTree:ENSGT00550000075002 InParanoid:Q9CRA8
NextBio:306496 Bgee:Q9CRA8 CleanEx:MM_EXOSC5 Genevestigator:Q9CRA8
GermOnline:ENSMUSG00000061286 Uniprot:Q9CRA8
Length = 235
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 50/144 (34%), Positives = 78/144 (54%)
Query: 8 GLRLDGRRPT-EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
G R P +R E +++ DGSA F G+T V+A VYGP EV+ S+++ ++A
Sbjct: 16 GTESSPRSPVCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK-VSKEIFNKA 74
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+ E + ++ P +S E ++R T EA +L L PR+ I + +QV+
Sbjct: 75 TL--EVILR-----PKIGLPGVAEKSRE--RLVRNTCEAVVLGALHPRTSITVVLQVVSD 125
Query: 127 DGGTRSACINAATLALQDAGIPMR 150
G + C+NAA +AL DAG+PMR
Sbjct: 126 AGSLLACCLNAACMALVDAGVPMR 149
>UNIPROTKB|Q10628 [details] [associations]
symbol:rph "Ribonuclease PH" species:1773 "Mycobacterium
tuberculosis" [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 GO:GO:0004549
HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG ProtClustDB:PRK00173
GO:GO:0009022 HAMAP:MF_00564 TIGRFAMs:TIGR01966 PIR:C70739
RefSeq:NP_215856.1 RefSeq:NP_335832.1 RefSeq:YP_006514718.1
PDB:3B4T PDBsum:3B4T ProteinModelPortal:Q10628 SMR:Q10628
PRIDE:Q10628 EnsemblBacteria:EBMYCT00000003516
EnsemblBacteria:EBMYCT00000071385 GeneID:13319926 GeneID:886864
GeneID:924657 KEGG:mtc:MT1381 KEGG:mtu:Rv1340 KEGG:mtv:RVBD_1340
PATRIC:18124810 TubercuList:Rv1340 EvolutionaryTrace:Q10628
Uniprot:Q10628
Length = 259
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 68/240 (28%), Positives = 111/240 (46%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR E+R + G GS + E G+TKV+ V + ++ + +
Sbjct: 4 REDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-RWRKATGLGWLT 62
Query: 70 CEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY+M A S DR + + R+ EIS +I +++ ACI + + I I VLQ
Sbjct: 63 AEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQ 122
Query: 126 ADGGTRSACINAATLALQDAGI------------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
ADGGTR+A I A +AL DA P+ + + S G ++ +DL Y E
Sbjct: 123 ADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEE 182
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMD-----AKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
DS +V + ++ T D TL+++ A +T + ++ +A+ C + R+ L
Sbjct: 183 DSRA--EVDMNVVAT-DTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDAL 239
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E R DGR P ++R + +A GSA + G+T V+AAVYGP+ K + ++A
Sbjct: 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGEN-PEKA 60
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEA-CILTHLMPRSQIDIFVQVLQ 125
+ + TG ++ K E + +++T+++ C+LT + P + + +QV+
Sbjct: 61 SIEVVWKPM---TGQIGKQEK------EYEMTLKRTLQSICLLT-VHPNTTTSVILQVVG 110
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-NSTPLLDLNYVED 174
DG INA AL AGIP++ + + G L + +LD N E+
Sbjct: 111 NDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 185 (70.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 57/220 (25%), Positives = 101/220 (45%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGPREVQNKSQ 60
E + +G R+DGR T +R + E+ + +A GSA+F G T+ ++A+ G + +
Sbjct: 305 EHIIKDGYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRID 364
Query: 61 QMSDQALVR--CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + R Y+ FS G+ + RR ++ + +E + H I
Sbjct: 365 SLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYTIR 424
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVED 174
I +L+++G + A + LA+ DAG+P++ V + G + L D+ ED
Sbjct: 425 IVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAILSDILGDED 484
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAI 214
G D V T VT +QMD K+ T ++M+ A+
Sbjct: 485 HLGDMDFKVA--GTEAGVTAIQMDIKI-TGVTREIMEKAL 521
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 185 (70.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 65/232 (28%), Positives = 109/232 (46%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGP-REVQNKSQQMSDQA- 66
R+DGR P +R L G + + GSAVF G T+ ++ A G R+ Q M D+
Sbjct: 315 RIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQRDAQRLDTLMGDKTD 374
Query: 67 LVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHL--MPRSQIDIFVQ 122
Y+ + G+ + PK RR + ++ M A ++ L P + + + +
Sbjct: 375 PFMLHYNFPPYCVGETGFVGSPK--RREIGHGRLAKRGMLA-VMPSLEEFPYA-VRVVSE 430
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVEDSAGG 178
+ +++G + A + +LAL DAG+P++ V + G + L D+ ED G
Sbjct: 431 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKFVVLSDILGDEDHLGD 490
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 230
D V T +T LQMD K+ T +++MQ+A+ KA +I V+ E
Sbjct: 491 MDFKVA--GTTGGITALQMDIKIEGIT-QEIMQIALNQAKAARTHILSVMDE 539
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 174 (66.3 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 65/232 (28%), Positives = 109/232 (46%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGPREVQNKSQQMSDQALV 68
R+DGR P +R L G + + GSA+F G T+ ++ A G + SQ + D
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLG---TERDSQLIDDLTGT 373
Query: 69 RCEYSMAN-----FSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHL-MPRSQIDIF 120
+ M N F G+ + PK RR + ++ + A + T P S I +
Sbjct: 374 HKNHFMLNYNFPPFCVGETGFVGSPK--RREIGHGNLAKRGIAAVMPTLTEFPYS-IRVV 430
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVEDSA 176
++ +++G + A + +LAL +AG+P++ V + G + L D+ ED
Sbjct: 431 SEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEDDKFVVLSDILGDEDHL 490
Query: 177 GGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
G D V T +T LQMD K+ T +++MQ+A++ KA +I EV+
Sbjct: 491 GDMDFKVA--GTAGGITALQMDIKIEGIT-QEIMQIALKQAKAARLHILEVM 539
>UNIPROTKB|Q8IEW0 [details] [associations]
symbol:EAP4 "Exosome-associated protein 4" species:5691
"Trypanosoma brucei" [GO:0000178 "exosome (RNase complex)"
evidence=IDA] InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AJ516002
ProteinModelPortal:Q8IEW0 IntAct:Q8IEW0 STRING:Q8IEW0
EuPathDB:TriTrypDB:Tb11.01.2820 EuPathDB:TriTrypDB:Tb427tmp.01.2820
Uniprot:Q8IEW0
Length = 227
Score = 160 (61.4 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 52/224 (23%), Positives = 103/224 (45%)
Query: 10 RLDGRR-PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
R GRR P E+R + + ++ SA E+G+T+V+ AV+ P+++ ++ + + V
Sbjct: 3 RSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYR--GSRGRV 60
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
C ++ + + +++L + +E ++ +P+ +++ V++L DG
Sbjct: 61 ACTVRRSSRAQKHELAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVVVEILAEDG 120
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYL-NSTPLLDLNYVE-DSAGGPDVTVGIL 186
G A AL G M D ++C A L + + + D + E ++A VT +L
Sbjct: 121 GLWDAIATGVCAALASGGFEMYDTFSACGAALLPDGSIVTDPSATEWNTAKATAVTCAML 180
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 230
+ + Q + PT D++ A++G A N I L E
Sbjct: 181 NSGNMCFTAQRGSCEPTTAL-DLVTAALKGTLARKNVISSQLCE 223
>GENEDB_PFALCIPARUM|PFB0415c [details] [associations]
symbol:PFB0415c "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 163 (62.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 58/237 (24%), Positives = 104/237 (43%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R++ R+ E+R + ++G S + +GNTK++ VYGP +K S + V
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNP-DSKYATYS-KGKVF 89
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+ N +T + + D +I ++ + + IL P+ I I ++Q DGG
Sbjct: 90 LDVKSLNINTIGASDRQRDD----DIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGG 145
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYL------NSTPLLDLN-----YVEDSAGG 178
SA + +LAL A I M+DI+ S + + L+DL+ Y +
Sbjct: 146 CLSATLTCISLALIKAQIQMKDIIISININSIICPVTKKMYHLVDLDGMEEKYYQSKYEM 205
Query: 179 PDVTVGILPTLDKVTLLQMDAKL-PTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+T+GI L V + T ++ CK++ + I++VL + TK+
Sbjct: 206 NSITLGICLNLKTVCFYHGTGSFFNSKTLAEITSYGECACKSLGSEIKKVLKQYTKK 262
>UNIPROTKB|O96177 [details] [associations]
symbol:PFB0415c "3' exoribonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 163 (62.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 58/237 (24%), Positives = 104/237 (43%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R++ R+ E+R + ++G S + +GNTK++ VYGP +K S + V
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNP-DSKYATYS-KGKVF 89
Query: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG 129
+ N +T + + D +I ++ + + IL P+ I I ++Q DGG
Sbjct: 90 LDVKSLNINTIGASDRQRDD----DIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGG 145
Query: 130 TRSACINAATLALQDAGIPMRDIVTSCSAGYL------NSTPLLDLN-----YVEDSAGG 178
SA + +LAL A I M+DI+ S + + L+DL+ Y +
Sbjct: 146 CLSATLTCISLALIKAQIQMKDIIISININSIICPVTKKMYHLVDLDGMEEKYYQSKYEM 205
Query: 179 PDVTVGILPTLDKVTLLQMDAKL-PTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+T+GI L V + T ++ CK++ + I++VL + TK+
Sbjct: 206 NSITLGICLNLKTVCFYHGTGSFFNSKTLAEITSYGECACKSLGSEIKKVLKQYTKK 262
>UNIPROTKB|Q0BWM9 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_762114.1 ProteinModelPortal:Q0BWM9
STRING:Q0BWM9 GeneID:4288000 KEGG:hne:HNE_3441 PATRIC:32219759
BioCyc:HNEP228405:GI69-3443-MONOMER Uniprot:Q0BWM9
Length = 713
Score = 169 (64.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 64/240 (26%), Positives = 109/240 (45%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIA-AVYGPREVQNKSQQM--SD 64
G R+DGR+ ++R + AE G + + GS++F G T+ I A G + + + +
Sbjct: 315 GQRIDGRKLDQIRPIVAEAGFLPRTHGSSLFTRGETQAICVATLGTSDDEQYIDGLDGTK 374
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ Y+ +S G+ R RR + + ++A + H I + ++
Sbjct: 375 KEKFMLHYNFPPYSVGETGRMGGAGRREIGHGKLAWRALKAVLPKHEDFPYTIRMVSEIT 434
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDLNYVEDSAGGPD 180
+++G + A + +LA+ DAG+P+ V+ + G + L D+ ED G D
Sbjct: 435 ESNGSSSMATVCGCSLAMMDAGVPLTRPVSGIAMGLILEGSEFAVLSDILGDEDHLGDMD 494
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG 240
V T + VT LQMD K+ T +D+M A+E K +I L E K L RG
Sbjct: 495 FKVA--GTENGVTSLQMDIKVAGIT-KDIMGKALEQAKGGRMHI---LGEMGKALTASRG 548
>TAIR|locus:2079429 [details] [associations]
symbol:RIF10 "AT3G03710" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=IGI]
[GO:0006401 "RNA catabolic process" evidence=IGI] [GO:0031425
"chloroplast RNA processing" evidence=IGI] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0010323 "negative regulation of isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=IMP] [GO:0015995 "chlorophyll biosynthetic process"
evidence=IMP] [GO:0016120 "carotene biosynthetic process"
evidence=IMP] [GO:0016123 "xanthophyll biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0009570 EMBL:CP002686 GO:GO:0006397
GO:GO:0003723 GO:GO:0006401 GO:GO:0008033 GO:GO:0006402
GO:GO:0016036 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC009540 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC009327
GO:GO:0016123 GO:GO:0006364 GO:GO:0015995 GO:GO:0000175
GO:GO:0016120 InterPro:IPR022967 SMART:SM00316 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AJ252123 EMBL:AF450480 IPI:IPI00534675
RefSeq:NP_187021.2 UniGene:At.26536 HSSP:Q53597
ProteinModelPortal:Q8GZQ3 SMR:Q8GZQ3 STRING:Q8GZQ3 PRIDE:Q8GZQ3
EnsemblPlants:AT3G03710.1 GeneID:821181 KEGG:ath:AT3G03710
GeneFarm:4127 TAIR:At3g03710 HOGENOM:HOG000218327 InParanoid:Q8GZQ3
KO:K00962 OMA:AQRIDNL PhylomeDB:Q8GZQ3 ProtClustDB:PLN00207
ArrayExpress:Q8GZQ3 Genevestigator:Q8GZQ3 GO:GO:0004654
GO:GO:0031425 GO:GO:0010323 Gene3D:1.10.10.400 PANTHER:PTHR11252
SUPFAM:SSF46915 TIGRFAMs:TIGR03591 Uniprot:Q8GZQ3
Length = 922
Score = 170 (64.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 62/231 (26%), Positives = 107/231 (46%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM--SD 64
G R DGR E+R + + G + +A GS +F G T+ +A V G +++ + + SD
Sbjct: 445 GKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSD 504
Query: 65 Q-ALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
+ +Y+ S G+ R RR + + +E + + I + V
Sbjct: 505 EYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTV 564
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL--------NSTPLL--DLNYVE 173
++++G + A + LALQDAG+P++ V + G + + +PL+ D+ E
Sbjct: 565 IESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAE 624
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYI 224
D++G D V D VT QMD K+ T E +M+ A+ KA +I
Sbjct: 625 DASGDMDFKVA--GNEDGVTAFQMDIKVGGITLE-IMEKALIQAKAGRRHI 672
>FB|FBgn0037815 [details] [associations]
symbol:Rrp46 "Rrp46" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000176 eggNOG:COG0689 SUPFAM:SSF55666
EMBL:AY058481 ProteinModelPortal:Q95TW1 SMR:Q95TW1 STRING:Q95TW1
PaxDb:Q95TW1 PRIDE:Q95TW1 FlyBase:FBgn0037815 InParanoid:Q95TW1
OrthoDB:EOG4BRV2M ArrayExpress:Q95TW1 Bgee:Q95TW1 Uniprot:Q95TW1
Length = 233
Score = 158 (60.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 43/135 (31%), Positives = 73/135 (54%)
Query: 18 EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS-DQALVRCEYSMAN 76
++RQ+ E +++ DGS ++ G T +I AV GP EV K+Q +S D + + C Y
Sbjct: 13 KLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEV--KTQNLSIDGSYLECNYR--- 67
Query: 77 FSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSAC-I 135
+ P+ R E + IR +E +L+ PRS++ + +Q L+ D G+ AC +
Sbjct: 68 ----PKAGLPQVTDRIREAA--IRDVLELALLSEAHPRSKMSVQIQELE-DRGSIDACAV 120
Query: 136 NAATLALQDAGIPMR 150
N A LA+ G+P++
Sbjct: 121 NCACLAMLIGGLPLK 135
>TIGR_CMR|ECH_0726 [details] [associations]
symbol:ECH_0726 "polyribonucleotide
nucleotidyltransferase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_507529.1
ProteinModelPortal:Q2GGA4 STRING:Q2GGA4 GeneID:3927271
KEGG:ech:ECH_0726 PATRIC:20576896
BioCyc:ECHA205920:GJNR-729-MONOMER Uniprot:Q2GGA4
Length = 796
Score = 168 (64.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 63/239 (26%), Positives = 108/239 (45%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK--VIAAVYGPREVQNKSQQMSDQAL 67
R+DGR E+R + E+ + KA GSA+F GNT+ V+ A+ P++ Q D+
Sbjct: 319 RIDGRAFDEIRDIEIEVDVLPKAHGSALFTRGNTQALVVTALGTPQDEQIVDDLDGDRRE 378
Query: 68 -VRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
Y+ ++ G+ +R P G R L R P + I + ++
Sbjct: 379 NFLLHYNFPPYAVGESAALRAP-GRREIGHGKLAWRAIRYVLPEKSDFPYT-IRVVSEIT 436
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVEDSAGGPD 180
++DG + A + A+LAL D G+P++ V + G + L D+ ED G D
Sbjct: 437 ESDGSSSMATVCGASLALMDTGVPIKSPVAGIAMGLIKEDDRFIILSDILGDEDHLGDMD 496
Query: 181 VTVGILPTLDKVTLLQMDAKLP---TNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 236
V T + VT LQMD K+ + E + A +G + + + V+ E+ +++
Sbjct: 497 FKVA--GTAEGVTALQMDMKISGIDIDIIEKALLQAKDGRMHILSKMNAVIQESRNRIK 553
>TAIR|locus:2222662 [details] [associations]
symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
evidence=IGI] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IGI] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
Genevestigator:Q9S7G6 Uniprot:Q9S7G6
Length = 991
Score = 168 (64.2 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 60/224 (26%), Positives = 99/224 (44%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY--GPREVQNKSQQMSD 64
+G R+DGR E+R + E + GSA+F G+T+V+ V P E Q+ +
Sbjct: 361 DGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGP 420
Query: 65 -QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
+ YS + T + ++ +RR + + + A + I I +V
Sbjct: 421 PKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTIRINSEV 480
Query: 124 LQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-----NSTPLLDLNYVEDSAGG 178
+ +DG T A + ++AL DAGIP+R V S G + +S + D V D G
Sbjct: 481 MSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDILGL 540
Query: 179 PD----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
D + I T D VT +Q+D K P D++ ++E +
Sbjct: 541 EDHLGDMDFKIAGTRDGVTAIQLDIK-PAGIPLDIVCESLENAR 583
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 166 (63.5 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 58/227 (25%), Positives = 103/227 (45%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGP-REVQNKSQQMSDQA- 66
R+DGR P +R L G + + GSA+F G T+ ++ G R+ Q M ++
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQ 125
Y+ +S G+ RR + + + A + + P S + + ++ +
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEFPYS-VRVVSEITE 432
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVEDSAGGPDV 181
++G + A + +LAL DAG+P++ V + G + L D+ ED G D
Sbjct: 433 SNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDILGDEDHLGDMDF 492
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
V T D VT LQMD K+ T +++M++A++ +I V+
Sbjct: 493 KVA--GTRDGVTALQMDIKIEGIT-KEIMEIALQQAYGARVHILNVM 536
>TIGR_CMR|CJE_1390 [details] [associations]
symbol:CJE_1390 "polyribonucleotide
nucleotidyltransferase" species:195099 "Campylobacter jejuni
RM1221" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:Q9UXC2 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_179377.1 ProteinModelPortal:Q5HTK8
STRING:Q5HTK8 GeneID:3231896 KEGG:cjr:CJE1390 PATRIC:20044580
BioCyc:CJEJ195099:GJC0-1417-MONOMER Uniprot:Q5HTK8
Length = 719
Score = 166 (63.5 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 67/239 (28%), Positives = 107/239 (44%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK--VIAAVYGPREVQ-----NKS 59
EG R DGR E+R + E + A GS +F G T+ V+A + G + Q +
Sbjct: 333 EGKRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK 392
Query: 60 QQMSDQALVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+S++ +V Y+ FS G+ K G R +L R + + P I
Sbjct: 393 NPISERFMVN--YNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPS--VDENYPYV-IR 447
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL---NSTPLL-DLNYVED 174
+ ++L+++G + A + +LAL+ AG+P +V + G + N +L D+ +ED
Sbjct: 448 LVSEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLED 507
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKL---PTNTFEDVMQLAIEGCKAVANYIREVLLE 230
G D V + D VT LQMD KL T + + A EG + N + E E
Sbjct: 508 HDGDMDFKVA--GSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKE 564
>UNIPROTKB|P05055 [details] [associations]
symbol:pnp "polynucleotide phosphorylase monomer"
species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
Length = 711
Score = 165 (63.1 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 58/228 (25%), Positives = 108/228 (47%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGP-REVQNKSQQMSDQA- 66
R+DGR +R L G + + GSA+F G T+ ++ A G R+ Q + M ++
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHL--MPRSQIDIFVQVL 124
Y+ +S G+ RR + ++ + A ++ + P + + + ++
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA-VMPDMDKFPYT-VRVVSEIT 432
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL----NSTPLLDLNYVEDSAGGPD 180
+++G + A + A+LAL DAG+P++ V + G + N L D+ ED G D
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMD 492
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
V + D ++ LQMD K+ T +++MQ+A+ K +I V+
Sbjct: 493 FKVA--GSRDGISALQMDIKIEGIT-KEIMQVALNQAKGARLHILGVM 537
>UNIPROTKB|Q2GJV5 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003729
GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 165 (63.1 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 61/225 (27%), Positives = 102/225 (45%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK--VIAAVYGPREVQNKSQQMSDQA- 66
R+DGR ++R + E+ ++KA GSA+F G+T+ VI A+ P++ Q D+
Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382
Query: 67 LVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
Y+ ++ G+ +P G R L R P + I + ++ +
Sbjct: 383 RFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRAIHPVLPSKADFPYT-IRVVSEITE 441
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVEDSAGGPDV 181
+DG + A + A+LAL D G+P++ V + G + L D+ ED G D
Sbjct: 442 SDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAILSDILGDEDYLGDMDF 501
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
V T + +T LQMD K+ F V+ A++ K +I E
Sbjct: 502 KVA--GTREGITALQMDMKVKGIDFA-VLGTALDQAKEGRFFIIE 543
>TIGR_CMR|APH_0767 [details] [associations]
symbol:APH_0767 "polyribonucleotide
nucleotidyltransferase" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0003729 GO:GO:0006396 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS RefSeq:YP_505346.1
ProteinModelPortal:Q2GJV5 STRING:Q2GJV5 GeneID:3930955
KEGG:aph:APH_0767 PATRIC:20950226 HOGENOM:HOG000218326
ProtClustDB:PRK11824 BioCyc:APHA212042:GHPM-783-MONOMER
Uniprot:Q2GJV5
Length = 838
Score = 165 (63.1 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 61/225 (27%), Positives = 102/225 (45%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK--VIAAVYGPREVQNKSQQMSDQA- 66
R+DGR ++R + E+ ++KA GSA+F G+T+ VI A+ P++ Q D+
Sbjct: 323 RIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQALVITALGTPQDEQIVDGFDGDKRE 382
Query: 67 LVRCEYSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
Y+ ++ G+ +P G R L R P + I + ++ +
Sbjct: 383 RFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRAIHPVLPSKADFPYT-IRVVSEITE 441
Query: 126 ADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVEDSAGGPDV 181
+DG + A + A+LAL D G+P++ V + G + L D+ ED G D
Sbjct: 442 SDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIKEGDRYAILSDILGDEDYLGDMDF 501
Query: 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIRE 226
V T + +T LQMD K+ F V+ A++ K +I E
Sbjct: 502 KVA--GTREGITALQMDMKVKGIDFA-VLGTALDQAKEGRFFIIE 543
>TIGR_CMR|DET_1289 [details] [associations]
symbol:DET_1289 "ribonuclease PH" species:243164
"Dehalococcoides ethenogenes 195" [GO:0008033 "tRNA processing"
evidence=ISS] [GO:0009022 "tRNA nucleotidyltransferase activity"
evidence=ISS] InterPro:IPR002381 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0008033 GO:GO:0000049
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689 Pfam:PF03725
SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277 HSSP:O29756
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:YP_182001.1 ProteinModelPortal:Q3Z6Z8
STRING:Q3Z6Z8 GeneID:3229379 KEGG:det:DET1289 PATRIC:21609609
BioCyc:DETH243164:GJNF-1290-MONOMER Uniprot:Q3Z6Z8
Length = 239
Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 69/226 (30%), Positives = 102/226 (45%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R DGR ++R + G + A+GS + E G T+VI +V +V + S V
Sbjct: 3 RGDGRNFNQLRPITITPGFQSFAEGSVLIEQGKTRVICSVSMEDKVPQFLRN-SGTGWVT 61
Query: 70 CEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACI-LTHLMPRSQIDIFVQVL 124
EYSM ST R ++ K RS EI +I +++ +C+ L L RS I I V+
Sbjct: 62 AEYSMLPRSTVTRTQRDSSAGKISGRSQEIQRLIGRSLRSCVDLAALGERSFI-IDCDVI 120
Query: 125 QADGGTRSACINAATLALQ-------DAGI----PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QAD GTR+A I A +AL D GI P V + S +LD Y E
Sbjct: 121 QADAGTRTASITGAYIALYLAFKKMVDMGILSKMPFTSQVAAVSVSIFKGNIVLDPCYDE 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPT---NTFEDVMQLAIEG 216
D D + ++ + +Q A+ T +T + V++L G
Sbjct: 181 DFQAEVDFNL-VMNDRAEFVEIQGTAEGKTFSRDTLDQVLKLGEAG 225
>TIGR_CMR|NSE_0057 [details] [associations]
symbol:NSE_0057 "polyribonucleotide
nucleotidyltransferase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_505958.1
ProteinModelPortal:Q2GEY8 STRING:Q2GEY8 GeneID:3931805
KEGG:nse:NSE_0057 PATRIC:22680229 BioCyc:NSEN222891:GHFU-94-MONOMER
Uniprot:Q2GEY8
Length = 757
Score = 160 (61.4 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 58/245 (23%), Positives = 107/245 (43%)
Query: 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGPREVQNKSQQM 62
V EG+R DGR TE+R + + + GSA+F G T+ ++ A G + + +
Sbjct: 312 VLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVVATLGSYQDEQVMDDI 371
Query: 63 SDQAL--VRCEYSMANFSTGD--RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ V Y+ ++ G+ +R P G R L ++ + P + +
Sbjct: 372 DGERRESVLLHYNFLPYAVGEVGALRAP-GRREIGHGRLALKAVKAVLPGKEVFPYT-LR 429
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN----STPLLDLNYVED 174
+ ++ ++DG + A + ++LAL D G+P+ V + G + S L D++ ED
Sbjct: 430 LVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGVRSAVLSDISGDED 489
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
G D V T + + LQMD K + T D + A+ G + + V+ +
Sbjct: 490 MLGDMDFKVA--GTRNGIVALQMDMKVRGISIATIRDALNQALAGRLHILEKMEHVIAKP 547
Query: 232 TKQLE 236
+ L+
Sbjct: 548 RESLK 552
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 159 (61.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 59/228 (25%), Positives = 106/228 (46%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK--VIAAVYGPREVQNKSQQMSD-QA 66
R+DGR +R + ++G + ++ GSA+F G T+ V+ + R+ Q+ D Q
Sbjct: 318 RIDGRDTKTVRPITVKVGVLPRSHGSALFTRGETQALVVTTLGTERDAQSIDDLDGDRQE 377
Query: 67 LVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
Y+ F G+ M PK RR + ++ + + T I + ++L
Sbjct: 378 EFIFHYNFPPFCVGEVGFMSGPK--RREIGHGRLAKRAVVPVVPTLDKFPYVIRVVSEIL 435
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLNYVEDSAGGPD 180
+++G + A + ++LAL DAG+P + V + G + L D+ ED G D
Sbjct: 436 ESNGSSSMASVCGSSLALMDAGVPTKAPVAGIAMGLIKENDKYAVLSDILGDEDHLGDMD 495
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
V T + VT LQMD K+ T +++M+ A++ K +I ++
Sbjct: 496 FKVA--GTSNGVTALQMDIKIEGIT-KEIMEQALDQAKEGRLHILSIM 540
>POMBASE|SPBC115.01c [details] [associations]
symbol:rrp46 "exosome subunit Rrp46 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC115.01c Pfam:PF01138 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 KO:K12590 PIR:T39298 RefSeq:NP_595260.1
ProteinModelPortal:O42894 STRING:O42894 EnsemblFungi:SPBC115.01c.1
GeneID:2539660 KEGG:spo:SPBC115.01c OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
NextBio:20800814 Uniprot:O42894
Length = 226
Score = 147 (56.8 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 55/212 (25%), Positives = 103/212 (48%)
Query: 26 IGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85
IG ++++DGS+ ++ G+ +VI V GP +V+ + ++++ +A V + + + K
Sbjct: 4 IGILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLN-KATVEVLVQPVS-GVAETLEK 61
Query: 86 PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG-GTRSACINAATLALQD 144
IS I +E I + PR+ I + +Q+++ DG T +A IN A LAL D
Sbjct: 62 M--------ISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLD 113
Query: 145 AGIPMRDIVTSCSAGYLNST----PLLD--LNYVEDSAGGPDVTVGILPTLDKVTLLQMD 198
AGI ++ I + + + N P +D +N +E + I K+ L+
Sbjct: 114 AGISLKYIPCAINCHWKNKITQDEPDVDGTINKLESII---TICYSISSEPAKLIFLETA 170
Query: 199 AKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 230
+P F V++ A + V+ ++E+L E
Sbjct: 171 GPIPEEDFFRVLETAPLHAEEVSKKMKELLFE 202
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 157 (60.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 60/231 (25%), Positives = 108/231 (46%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGP-REVQ---NKSQQMSD 64
R+DGR +R L G + + GSA+F G T+ ++ A G R+ Q + + D
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 65 QALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFV 121
L+ Y+ + G+ + PK RR + ++ + A + + P + + +
Sbjct: 376 HFLLH--YNFPPYCVGETGFVGSPK--RREIGHGRLAKRGIAAVMPSPEEFPYT-VRVVS 430
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVEDSAG 177
++ +++G + A + ++LAL DAG+P++ V + G + L D+ ED G
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSDILGDEDHLG 490
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
D V T VT LQMD K+ T +++MQ+A+ K +I V+
Sbjct: 491 DMDFKVA--GTATGVTALQMDIKIEGIT-KEIMQIALNQAKGARLHILSVM 538
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 157 (60.3 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 60/231 (25%), Positives = 108/231 (46%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGP-REVQ---NKSQQMSD 64
R+DGR +R L G + + GSA+F G T+ ++ A G R+ Q + + D
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 65 QALVRCEYSMANFSTGDR--MRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFV 121
L+ Y+ + G+ + PK RR + ++ + A + + P + + +
Sbjct: 376 HFLLH--YNFPPYCVGETGFVGSPK--RREIGHGRLAKRGIAAVMPSPEEFPYT-VRVVS 430
Query: 122 QVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS----TPLLDLNYVEDSAG 177
++ +++G + A + ++LAL DAG+P++ V + G + L D+ ED G
Sbjct: 431 EITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSDILGDEDHLG 490
Query: 178 GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
D V T VT LQMD K+ T +++MQ+A+ K +I V+
Sbjct: 491 DMDFKVA--GTATGVTALQMDIKIEGIT-KEIMQIALNQAKGARLHILSVM 538
>WB|WBGene00000798 [details] [associations]
symbol:crn-5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0006309 "apoptotic DNA fragmentation"
evidence=IMP] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0000178 "exosome (RNase complex)" evidence=IMP] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0032077 "positive regulation of
deoxyribonuclease activity" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008340 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006396 GO:GO:0003690
GO:GO:0000178 GO:GO:0006309 GO:GO:0008408 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:Z49909 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 GO:GO:0032077 EMBL:AY303579 PIR:T19247
RefSeq:NP_496284.1 UniGene:Cel.23323 ProteinModelPortal:G5EG59
SMR:G5EG59 IntAct:G5EG59 EnsemblMetazoa:C14A4.5 GeneID:174634
KEGG:cel:CELE_C14A4.5 CTD:174634 WormBase:C14A4.5 OMA:CGDNKFN
EvolutionaryTrace:G5EG59 NextBio:884842 Uniprot:G5EG59
Length = 214
Score = 143 (55.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 40/134 (29%), Positives = 63/134 (47%)
Query: 19 MRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFS 78
+R++R E+ + ADGSA F G T + A+ GP +V + + SD+A+ AN
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVH--ASKASDEAMTLDISYRANC- 61
Query: 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAA 138
GD + ++ +I T+ I L P + I + V +Q DG + IN A
Sbjct: 62 ---------GDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGA 112
Query: 139 TLALQDAGIPMRDI 152
AL D G+P +
Sbjct: 113 CFALLDNGMPFETV 126
>RGD|1307987 [details] [associations]
symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000957
"mitochondrial RNA catabolic process" evidence=ISO] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=ISO] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=ISO] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=ISO] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=ISO] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005758 "mitochondrial intermembrane space" evidence=ISO]
[GO:0005886 "plasma membrane" evidence=ISO] [GO:0006401 "RNA
catabolic process" evidence=ISO] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008266 "poly(U) RNA binding"
evidence=ISO] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
[GO:0034599 "cellular response to oxidative stress" evidence=ISO]
[GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
respiration" evidence=ISO] [GO:0043631 "RNA polyadenylation"
evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
[GO:0045926 "negative regulation of growth" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
"positive regulation of mRNA catabolic process" evidence=ISO]
[GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISO]
[GO:2000772 "regulation of cellular senescence" evidence=ISO]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1307987 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
GO:GO:0070584 GO:GO:0000958 GO:GO:0071850 GO:GO:0000175
GO:GO:0043457 GO:GO:0071042 InterPro:IPR022967 SMART:SM00316
GO:GO:0045025 Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014
GO:GO:2000772 HOGENOM:HOG000218327 GO:GO:0004654 PANTHER:PTHR11252
HOVERGEN:HBG053625 GO:GO:0000965 GO:GO:0000964 GO:GO:2000627
GO:GO:0000962 GO:GO:0035928 UniGene:Rn.23118 EMBL:BC092603
IPI:IPI00777805 ProteinModelPortal:Q562B9 STRING:Q562B9
PRIDE:Q562B9 UCSC:RGD:1307987 InParanoid:Q562B9 ArrayExpress:Q562B9
Genevestigator:Q562B9 Uniprot:Q562B9
Length = 452
Score = 147 (56.8 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 66/246 (26%), Positives = 110/246 (44%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GSA+F+ G T+V+ V + E KS Q+
Sbjct: 26 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 85
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEAC-ILTHLMPRSQIDIF 120
D+ + Y ++T + + +RR + + + C ++ P + I +
Sbjct: 86 VKDKNFM-LHYEFPPYATNETGKVTGVNRRELGHGALAEKAL--CPVIPKDFPFT-IRVT 141
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-STP----------LLDL 169
+VL+++G + A +LAL DAG+P+ V + G + S P L D+
Sbjct: 142 SEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEIEDYRLLTDI 201
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 229
+ED G D+ I T +T LQ D KLP + +M+ AI+ VA RE+L
Sbjct: 202 LGIEDYNG--DMDFKIAGTNKGITALQADIKLPGVPVKIIME-AIQQA-TVAK--REILQ 255
Query: 230 ENTKQL 235
+K +
Sbjct: 256 TMSKTI 261
>TIGR_CMR|SPO_3389 [details] [associations]
symbol:SPO_3389 "polyribonucleotide
nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
PATRIC:23380231 Uniprot:Q5LN23
Length = 714
Score = 149 (57.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 53/219 (24%), Positives = 99/219 (45%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTK-VIAAVYGPREVQNKSQQMSD-- 64
G R+DGR T +R + AE G + + GSA+F G T+ ++ G + + +
Sbjct: 316 GKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLGTGDDEQFIDALHGNF 375
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
++ Y+ +S G+ R RR + + ++A + I + ++
Sbjct: 376 KSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPAPTDFPYTIRVVSEIT 435
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-----NSTPLLDLNYVEDSAGGP 179
+++G + A + +L++ DAG+P++ V + G + + L D+ ED G
Sbjct: 436 ESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGSYAVLTDILGDEDHLGDM 495
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCK 218
D V T + +T LQMD K+ T E +M+ A+ K
Sbjct: 496 DFKVA--GTENGITSLQMDIKVAGITPE-IMEKALSQAK 531
>MGI|MGI:1918951 [details] [associations]
symbol:Pnpt1 "polyribonucleotide nucleotidyltransferase 1"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000957 "mitochondrial RNA catabolic
process" evidence=ISO] [GO:0000958 "mitochondrial mRNA catabolic
process" evidence=ISO;IMP] [GO:0000962 "positive regulation of
mitochondrial RNA catabolic process" evidence=ISO] [GO:0000964
"mitochondrial RNA 5'-end processing" evidence=ISO] [GO:0000965
"mitochondrial RNA 3'-end processing" evidence=ISO] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0005758 "mitochondrial
intermembrane space" evidence=ISO;IDA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=ISO]
[GO:0016020 "membrane" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
[GO:0034599 "cellular response to oxidative stress" evidence=ISO]
[GO:0035198 "miRNA binding" evidence=ISO] [GO:0035458 "cellular
response to interferon-beta" evidence=ISO] [GO:0035927 "RNA import
into mitochondrion" evidence=ISO] [GO:0035928 "rRNA import into
mitochondrion" evidence=ISO] [GO:0043457 "regulation of cellular
respiration" evidence=IMP] [GO:0043631 "RNA polyadenylation"
evidence=ISO] [GO:0045025 "mitochondrial degradosome" evidence=ISO]
[GO:0045926 "negative regulation of growth" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO] [GO:0061014
"positive regulation of mRNA catabolic process" evidence=ISO]
[GO:0070207 "protein homotrimerization" evidence=ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISO] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISO] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISO]
[GO:2000772 "regulation of cellular senescence" evidence=ISO]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1918951
Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0045926 GO:GO:0035198 GO:GO:0070207
GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584
GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
eggNOG:COG1185 EMBL:BX000351 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:RDKTLMI CTD:87178 HOVERGEN:HBG053625
OrthoDB:EOG4T4CTT GO:GO:0097222 GO:GO:0000965 GO:GO:0000964
GO:GO:2000627 GO:GO:0000962 GO:GO:0035928 EMBL:AJ507387
EMBL:AF465249 EMBL:AK004563 EMBL:AK149419 EMBL:BC027228
EMBL:BC049283 EMBL:BC055826 IPI:IPI00321923 IPI:IPI00556889
RefSeq:NP_082145.1 RefSeq:XP_003689309.1 UniGene:Mm.211131 PDB:1WHU
PDBsum:1WHU ProteinModelPortal:Q8K1R3 SMR:Q8K1R3 STRING:Q8K1R3
PhosphoSite:Q8K1R3 PaxDb:Q8K1R3 PRIDE:Q8K1R3
Ensembl:ENSMUST00000020756 GeneID:71701 KEGG:mmu:71701
UCSC:uc007igp.1 GeneTree:ENSGT00390000014001 InParanoid:Q8K1R3
EvolutionaryTrace:Q8K1R3 NextBio:334263 Bgee:Q8K1R3
Genevestigator:Q8K1R3 GermOnline:ENSMUSG00000020464 Uniprot:Q8K1R3
Length = 783
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 61/239 (25%), Positives = 105/239 (43%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GSA+F+ G T+V+ V + E KS Q+
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEAC-ILTHLMPRSQIDIF 120
D+ + Y ++T + + +RR + + + C ++ P + I +
Sbjct: 418 VKDKNFM-LHYEFPPYATNETGKVTGVNRRELGHGALAEKAL--CPVIPKDFPFT-IRVT 473
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-P----------LLDL 169
+VL+++G + A +LAL DAG+P+ V + G + T P L D+
Sbjct: 474 SEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKTNPEKGEIEDYRLLTDI 533
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
+ED G D+ I T +T LQ D KLP + +M+ AI+ I +++
Sbjct: 534 LGIEDYNG--DMDFKIAGTNKGITALQADIKLPGVPIKIIME-AIQQASVAKKEILQIM 589
>WB|WBGene00015266 [details] [associations]
symbol:BE0003N10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003029 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50126
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
GeneTree:ENSGT00390000014001 EMBL:FO080241 RefSeq:NP_497324.3
UniGene:Cel.33878 ProteinModelPortal:Q965N3 SMR:Q965N3 PaxDb:Q965N3
EnsemblMetazoa:BE0003N10.1 GeneID:175269 KEGG:cel:CELE_BE0003N10.1
UCSC:BE0003N10.1 CTD:175269 WormBase:BE0003N10.1 InParanoid:Q965N3
OMA:PWNGPVX NextBio:887466 Uniprot:Q965N3
Length = 738
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 56/212 (26%), Positives = 90/212 (42%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--------AAVYGPREVQNKS 59
G+R DGRRP E R + + K G ++F+ G T+V+ AA + P V
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDSVAQLL 391
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRS---Q 116
++ + Y F+ + G RS + + L +L P
Sbjct: 392 GSQRKKSFM-LHYEFPGFAINEF-----GTTRSLNRREIGHGALAEKSLKNLFPADFPYA 445
Query: 117 IDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN--STP------LLD 168
+ QVL+++G + A + +LAL DAG+PM++ + G ++ + P L D
Sbjct: 446 TRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAEPETKYRVLTD 505
Query: 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK 200
+ +ED AG D V T D T Q+D K
Sbjct: 506 ILGIEDYAGDMDFKVA--GTRDGFTAAQLDVK 535
>UNIPROTKB|G3V6G7 [details] [associations]
symbol:Pnpt1 "Polyribonucleotide nucleotidyltransferase 1"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=IEA] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0034599 "cellular response to oxidative stress" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
degradosome" evidence=IEA] [GO:0045926 "negative regulation of
growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
catabolic process" evidence=IEA] [GO:0070207 "protein
homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IEA]
[GO:2000772 "regulation of cellular senescence" evidence=IEA]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307987 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 CTD:87178 GeneTree:ENSGT00390000014001
EMBL:CH473996 RefSeq:NP_001135843.1 UniGene:Rn.23118
ProteinModelPortal:G3V6G7 Ensembl:ENSRNOT00000004919 GeneID:360992
KEGG:rno:360992 NextBio:674815 Uniprot:G3V6G7
Length = 784
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 66/246 (26%), Positives = 110/246 (44%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GSA+F+ G T+V+ V + E KS Q+
Sbjct: 358 RCDGRDLTSLRNISCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESSIKSDQIITAING 417
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEAC-ILTHLMPRSQIDIF 120
D+ + Y ++T + + +RR + + + C ++ P + I +
Sbjct: 418 VKDKNFM-LHYEFPPYATNETGKVTGVNRRELGHGALAEKAL--CPVIPKDFPFT-IRVT 473
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-STP----------LLDL 169
+VL+++G + A +LAL DAG+P+ V + G + S P L D+
Sbjct: 474 SEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAVGLVTKSNPEKGEIEDYRLLTDI 533
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 229
+ED G D+ I T +T LQ D KLP + +M+ AI+ VA RE+L
Sbjct: 534 LGIEDYNG--DMDFKIAGTNKGITALQADIKLPGVPVKIIME-AIQQA-TVAK--REILQ 587
Query: 230 ENTKQL 235
+K +
Sbjct: 588 TMSKTI 593
>UNIPROTKB|Q95Z09 [details] [associations]
symbol:RRP41B "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AJ309001 ProteinModelPortal:Q95Z09
IntAct:Q95Z09 STRING:Q95Z09 GenomeReviews:AE017150_GR
eggNOG:NOG277594 ProtClustDB:CLSZ2438846 Uniprot:Q95Z09
Length = 256
Score = 139 (54.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 41/153 (26%), Positives = 65/153 (42%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV- 68
R DGR EMR ++++ DGSA + G T V A+ GP + ++ + +
Sbjct: 6 RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCIHV 65
Query: 69 -RCEYSMANFSTGDRMRKPKGDRRSTE---ISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
R TG + + +R E + + +EA + PR ++ V VL
Sbjct: 66 NRAARIPQEGGTGRLIMMERRERERCEDGELKQFLTSLVEAIVCLDRFPRCVLEAHVTVL 125
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCS 157
DG + NA AL DAG+P R + + S
Sbjct: 126 MDDGALFAVASNAIMCALLDAGVPCRSTIAAVS 158
>UNIPROTKB|F1NU18 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0000958 "mitochondrial mRNA catabolic process" evidence=IEA]
[GO:0000962 "positive regulation of mitochondrial RNA catabolic
process" evidence=IEA] [GO:0000964 "mitochondrial RNA 5'-end
processing" evidence=IEA] [GO:0000965 "mitochondrial RNA 3'-end
processing" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0034599 "cellular response to oxidative stress" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0043457 "regulation of
cellular respiration" evidence=IEA] [GO:0045025 "mitochondrial
degradosome" evidence=IEA] [GO:0045926 "negative regulation of
growth" evidence=IEA] [GO:0061014 "positive regulation of mRNA
catabolic process" evidence=IEA] [GO:0070207 "protein
homotrimerization" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IEA] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IEA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IEA]
[GO:2000772 "regulation of cellular senescence" evidence=IEA]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005886 GO:GO:0008266 GO:GO:0005758
GO:GO:0034599 GO:GO:0006378 GO:GO:0045926 GO:GO:0035198
GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0034046
GO:GO:0000958 GO:GO:0071850 GO:GO:0000175 GO:GO:0043457
GO:GO:0071042 InterPro:IPR022967 SMART:SM00316 GO:GO:0045025
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS GO:GO:0000965 GO:GO:0000964
GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
GeneTree:ENSGT00390000014001 EMBL:AADN02046838 IPI:IPI00587631
Ensembl:ENSGALT00000012892 Uniprot:F1NU18
Length = 714
Score = 142 (55.0 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 61/239 (25%), Positives = 107/239 (44%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQMS----- 63
R DGR T +R ++ E+ GSA+F+ G T+V+ V + E KS +S
Sbjct: 288 RCDGRDLTSLRDIKCEVNMFKMLHGSALFQRGQTQVLCTVTFDSIESSVKSDLISTAVSG 347
Query: 64 --DQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + Y ++T + + K G +RR + + + ++ P + I +
Sbjct: 348 IKDKNFM-LHYEFPPYATNE-IGKVTGVNRRELGHAGALAERALKPVIPQDFPFT-IRVT 404
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TP----LLDLNYVEDS 175
+VL+++G + A +LAL DAG+P+ V + G + P + D + D
Sbjct: 405 SEVLESNGSSSMASACGGSLALMDAGVPVSSAVAGVAVGLVTKYDPEGRDIEDYRLLTDI 464
Query: 176 AGGPD----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLE 230
G D + + T VT LQ+D KLP + +M+ AI+ A I +++ E
Sbjct: 465 LGIEDYYGDMDFKMAGTSKGVTALQVDLKLPGIPIKIIME-AIQQATAAKREILQIMNE 522
>SGD|S000003327 [details] [associations]
symbol:RRP46 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IC] [GO:0043628
"ncRNA 3'-end processing" evidence=IC] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IC] InterPro:IPR001247 SGD:S000003327 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 GO:GO:0071051
eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
EMBL:Z72880 EMBL:AY389297 PIR:S64390 RefSeq:NP_011609.2
ProteinModelPortal:P53256 SMR:P53256 DIP:DIP-6838N IntAct:P53256
MINT:MINT-614217 STRING:P53256 PaxDb:P53256 PeptideAtlas:P53256
EnsemblFungi:YGR095C GeneID:852987 KEGG:sce:YGR095C CYGD:YGR095c
HOGENOM:HOG000248419 NextBio:972806 Genevestigator:P53256
GermOnline:YGR095C Uniprot:P53256
Length = 223
Score = 132 (51.5 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 57/227 (25%), Positives = 103/227 (45%)
Query: 22 LRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ---QMSDQALVRCEYSMANFS 78
++AEIG + DGS+ F +TKVI +V GP E + + + Q++ + +VR +A +
Sbjct: 3 VQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVA--T 60
Query: 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ-----ADGGTR-- 131
T +++ + K +R + I H PR I Q+L+ A+ R
Sbjct: 61 TREKVLEDK-----------LRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLREL 109
Query: 132 SACINAATLALQDAGIPMRDIVTSCSAGYLNSTP--LLD--LNYVEDSAGGPDVTVGIL- 186
S CINAA LAL DAGI + + S + T ++D ++ S + + +
Sbjct: 110 SCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVN 169
Query: 187 --PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
+ V LL + + +++L + C+ + IR ++ +N
Sbjct: 170 GGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDN 216
>UNIPROTKB|Q8TCS8 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0035458 "cellular
response to interferon-beta" evidence=IDA] [GO:0061014 "positive
regulation of mRNA catabolic process" evidence=IMP] [GO:0035927
"RNA import into mitochondrion" evidence=IDA] [GO:0000964
"mitochondrial RNA 5'-end processing" evidence=IMP] [GO:0000965
"mitochondrial RNA 3'-end processing" evidence=IMP] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=IMP] [GO:0070207
"protein homotrimerization" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IDA] [GO:0008266 "poly(U)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0000962 "positive regulation of mitochondrial RNA
catabolic process" evidence=IDA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0043631 "RNA polyadenylation"
evidence=IDA] [GO:0034599 "cellular response to oxidative stress"
evidence=IDA] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IDA] [GO:0006402 "mRNA catabolic process" evidence=IDA]
[GO:0045926 "negative regulation of growth" evidence=IDA]
[GO:0071850 "mitotic cell cycle arrest" evidence=IDA] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0005758
"mitochondrial intermembrane space" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0051260 "protein
homooligomerization" evidence=IDA] [GO:0000958 "mitochondrial mRNA
catabolic process" evidence=IDA] [GO:0045025 "mitochondrial
degradosome" evidence=IDA] [GO:0035928 "rRNA import into
mitochondrion" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071042 "nuclear polyadenylation-dependent mRNA
catabolic process" evidence=IDA] [GO:0043457 "regulation of
cellular respiration" evidence=ISS] [GO:0070584 "mitochondrion
morphogenesis" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:2000772 "regulation of cellular senescence" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886
GO:GO:0008266 GO:GO:0005758 GO:GO:0034599 GO:GO:0045926
GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 eggNOG:COG1185
EMBL:AC015982 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:AJ458465
EMBL:AY027528 EMBL:BC000862 EMBL:BC005986 EMBL:BC053660
EMBL:AY290863 EMBL:CR749867 IPI:IPI00744711 PIR:T50626
RefSeq:NP_149100.2 UniGene:Hs.388733 PDB:3U1K PDBsum:3U1K
ProteinModelPortal:Q8TCS8 SMR:Q8TCS8 STRING:Q8TCS8
PhosphoSite:Q8TCS8 DMDM:115502437 REPRODUCTION-2DPAGE:IPI00291165
PaxDb:Q8TCS8 PeptideAtlas:Q8TCS8 PRIDE:Q8TCS8
Ensembl:ENST00000415374 Ensembl:ENST00000447944 GeneID:87178
KEGG:hsa:87178 UCSC:uc002rzf.2 CTD:87178 GeneCards:GC02M055861
H-InvDB:HIX0023979 HGNC:HGNC:23166 HPA:HPA034603 MIM:610316
neXtProt:NX_Q8TCS8 PharmGKB:PA134915354 HOVERGEN:HBG053625
InParanoid:Q8TCS8 OMA:YTMRVVS OrthoDB:EOG4T4CTT PhylomeDB:Q8TCS8
BRENDA:2.7.7.8 GenomeRNAi:87178 NextBio:76209 ArrayExpress:Q8TCS8
Bgee:Q8TCS8 CleanEx:HS_PNPT1 Genevestigator:Q8TCS8
GermOnline:ENSG00000138035 GO:GO:0097222 GO:GO:0000965
GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
Uniprot:Q8TCS8
Length = 783
Score = 141 (54.7 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 62/239 (25%), Positives = 106/239 (44%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GSA+F+ G T+V+ V + E KS Q+
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + Y ++T + + K G +RR + + + ++ P + I +
Sbjct: 418 IKDKNFM-LHYEFPPYATNE-IGKVTGLNRRELGHGALAEKALYP-VIPRDFPFT-IRVT 473
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-P----------LLDL 169
+VL+++G + A +LAL D+G+P+ V + G + T P L D+
Sbjct: 474 SEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDI 533
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
+ED G D+ I T +T LQ D KLP + VM+ AI+ I +++
Sbjct: 534 LGIEDYNG--DMDFKIAGTNKGITALQADIKLPGIPIKIVME-AIQQASVAKKEILQIM 589
>UNIPROTKB|Q5RCW2 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9601 "Pongo abelii" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000957
"mitochondrial RNA catabolic process" evidence=ISS] [GO:0000958
"mitochondrial mRNA catabolic process" evidence=ISS] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=ISS] [GO:0000964 "mitochondrial RNA 5'-end processing"
evidence=ISS] [GO:0000965 "mitochondrial RNA 3'-end processing"
evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0008266 "poly(U) RNA binding" evidence=ISS] [GO:0034046
"poly(G) RNA binding" evidence=ISS] [GO:0034599 "cellular response
to oxidative stress" evidence=ISS] [GO:0035198 "miRNA binding"
evidence=ISS] [GO:0035927 "RNA import into mitochondrion"
evidence=ISS] [GO:0035928 "rRNA import into mitochondrion"
evidence=ISS] [GO:0043457 "regulation of cellular respiration"
evidence=ISS] [GO:0043631 "RNA polyadenylation" evidence=ISS]
[GO:0045025 "mitochondrial degradosome" evidence=ISS] [GO:0045926
"negative regulation of growth" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0061014 "positive regulation
of mRNA catabolic process" evidence=ISS] [GO:0070207 "protein
homotrimerization" evidence=ISS] [GO:0070584 "mitochondrion
morphogenesis" evidence=ISS] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISS]
[GO:0071850 "mitotic cell cycle arrest" evidence=ISS] [GO:0097222
"mitochondrial mRNA polyadenylation" evidence=ISS] [GO:2000627
"positive regulation of miRNA catabolic process" evidence=ISS]
[GO:2000772 "regulation of cellular senescence" evidence=ISS]
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0008266 GO:GO:0016020 GO:GO:0005758 GO:GO:0034599
GO:GO:0045926 GO:GO:0035198 GO:GO:0070207 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 CTD:87178 HOVERGEN:HBG053625 GO:GO:0097222
GO:GO:0000965 GO:GO:0000964 GO:GO:2000627 GO:GO:0000962
GO:GO:0035928 EMBL:CR858156 RefSeq:NP_001125193.1 UniGene:Pab.14131
ProteinModelPortal:Q5RCW2 SMR:Q5RCW2 PRIDE:Q5RCW2 GeneID:100172084
KEGG:pon:100172084 Uniprot:Q5RCW2
Length = 783
Score = 141 (54.7 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 62/239 (25%), Positives = 106/239 (44%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GSA+F+ G T+V+ V + E KS Q+
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + Y ++T + + K G +RR + + + ++ P + I +
Sbjct: 418 IKDKNFM-LHYEFPPYATNE-IGKVTGLNRRELGHGALAEKALYP-VIPRDFPFT-IRVT 473
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST-P----------LLDL 169
+VL+++G + A +LAL D+G+P+ V + G + T P L D+
Sbjct: 474 SEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDI 533
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
+ED G D+ I T +T LQ D KLP + VM+ AI+ I +++
Sbjct: 534 LGIEDYNG--DMDFKIAGTNKGITALQADIKLPGIPIKIVME-AIQQASVAKKEILQIM 589
>UNIPROTKB|O33325 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR014069 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0005886 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842580
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 PIR:F70883 RefSeq:NP_217299.1
RefSeq:NP_337358.1 RefSeq:YP_006516229.1 ProteinModelPortal:O33325
SMR:O33325 PRIDE:O33325 EnsemblBacteria:EBMYCT00000001176
EnsemblBacteria:EBMYCT00000071784 GeneID:13317568 GeneID:888467
GeneID:925429 KEGG:mtc:MT2853 KEGG:mtu:Rv2783c KEGG:mtv:RVBD_2783c
PATRIC:18128028 TubercuList:Rv2783c TIGRFAMs:TIGR02696
Uniprot:O33325
Length = 752
Score = 140 (54.3 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 45/158 (28%), Positives = 77/158 (48%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQMSDQALV 68
R+DGR T++R L AE+ V +A GSA+FE G T+++ ++ + + +
Sbjct: 346 RIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETSK 405
Query: 69 RC--EYSMANFSTGD--RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
R Y+ FSTG+ R+ PK R +L R + P + I + L
Sbjct: 406 RYMHHYNFPPFSTGETGRVGSPKR-REIGHGALAERALVPVLPSVEEFPYA-IRQVSEAL 463
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN 162
++G T + A+TLAL +AG+P++ V + G ++
Sbjct: 464 GSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVS 501
>UNIPROTKB|E2QWK2 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006402 "mRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS GeneTree:ENSGT00390000014001
EMBL:AAEX03007533 Ensembl:ENSCAFT00000004640 Uniprot:E2QWK2
Length = 789
Score = 137 (53.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 65/239 (27%), Positives = 108/239 (45%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GSA+F+ G T+V V + E KS ++
Sbjct: 364 RCDGRDLTSLRNINCEVDLFKTLHGSALFQRGQTQVFCTVTFDSLESSIKSDRIITAING 423
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + Y ++T + + K G +RR + + + ++ P + I +
Sbjct: 424 IKDKNFM-LHYEFPPYATNE-IGKVTGVNRRELGHGALAEKALYP-VIPKDFPFT-IRVT 479
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-STP----------LLDL 169
+VL+++G + A +LAL DAG+P+ V + G + + P L D+
Sbjct: 480 SEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNNPDKGEIEDYRLLTDI 539
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
+ED G D+ I T +T LQ D KLP + VM+ AI+ +VA RE+L
Sbjct: 540 LGIEDYNG--DMDFKIAGTSKGITALQADIKLPGIPIKIVME-AIQQA-SVAK--REIL 592
>FB|FBgn0039846 [details] [associations]
symbol:CG11337 species:7227 "Drosophila melanogaster"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
Pfam:PF03725 SUPFAM:SSF55666 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
FlyBase:FBgn0039846 EMBL:BT015961 ProteinModelPortal:Q5U1D1
SMR:Q5U1D1 STRING:Q5U1D1 PRIDE:Q5U1D1 InParanoid:Q5U1D1
ArrayExpress:Q5U1D1 Bgee:Q5U1D1 Uniprot:Q5U1D1
Length = 771
Score = 136 (52.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 59/252 (23%), Positives = 111/252 (44%)
Query: 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ 60
E + GLR DGR ++R + ++ GSA+F+ G T+V V +E K
Sbjct: 347 ELIFERGLRCDGRDYDQLRNISCQVDMYKPLHGSALFQRGQTQVFCTVSLDSQESAMKLD 406
Query: 61 QMS--DQALVRCE-----YSMANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLM 112
++ D ++ + Y ++TG+ R P G R +L R + L +
Sbjct: 407 SLAALDSGGLKAKNFMLHYEFPPYATGEVGRIGPVGRREMGHGALAERSLLPT--LPNDY 464
Query: 113 PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL------NSTPL 166
P + + + +VL+++G + A + +LAL DAG+P+ + G + ++ L
Sbjct: 465 PFT-VRLTSEVLESNGSSSMASVCGGSLALMDAGVPVSAPAAGVAIGLVTKFENDDTKHL 523
Query: 167 LDLNYVEDSAGGPD----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
D + D G D + + + T T +Q D K+P + VM+ + A +N
Sbjct: 524 QDYRILTDILGIEDYMGDMDMKVAGTRKGFTAIQADLKIPGIPLKVVMESLQKATDAKSN 583
Query: 223 YIREVLLENTKQ 234
I +++ E ++
Sbjct: 584 -ILDIMSEAIRE 594
>UNIPROTKB|E1BIQ0 [details] [associations]
symbol:PNPT1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000772 "regulation of cellular senescence"
evidence=IEA] [GO:2000627 "positive regulation of miRNA catabolic
process" evidence=IEA] [GO:0097222 "mitochondrial mRNA
polyadenylation" evidence=IEA] [GO:0071850 "mitotic cell cycle
arrest" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0070207
"protein homotrimerization" evidence=IEA] [GO:0061014 "positive
regulation of mRNA catabolic process" evidence=IEA] [GO:0045926
"negative regulation of growth" evidence=IEA] [GO:0045025
"mitochondrial degradosome" evidence=IEA] [GO:0043457 "regulation
of cellular respiration" evidence=IEA] [GO:0035928 "rRNA import
into mitochondrion" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0034599 "cellular response to oxidative stress"
evidence=IEA] [GO:0034046 "poly(G) RNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005758 "mitochondrial intermembrane
space" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0000965
"mitochondrial RNA 3'-end processing" evidence=IEA] [GO:0000964
"mitochondrial RNA 5'-end processing" evidence=IEA] [GO:0000962
"positive regulation of mitochondrial RNA catabolic process"
evidence=IEA] [GO:0000958 "mitochondrial mRNA catabolic process"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005886 GO:GO:0008266
GO:GO:0005758 GO:GO:0034599 GO:GO:0006378 GO:GO:0045926
GO:GO:0035198 GO:GO:0070207 GO:GO:0035458 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0034046 GO:GO:0070584 GO:GO:0000958
GO:GO:0071850 GO:GO:0000175 GO:GO:0043457 GO:GO:0071042
InterPro:IPR022967 SMART:SM00316 GO:GO:0045025 Pfam:PF03725
SUPFAM:SSF55666 GO:GO:0061014 GO:GO:2000772 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 CTD:87178 OMA:YTMRVVS GO:GO:0000965
GO:GO:0000964 GO:GO:2000627 GO:GO:0000962 GO:GO:0035928
GeneTree:ENSGT00390000014001 EMBL:DAAA02030915 EMBL:DAAA02030914
IPI:IPI00700535 RefSeq:NP_001179126.1 UniGene:Bt.45909
ProteinModelPortal:E1BIQ0 Ensembl:ENSBTAT00000011729 GeneID:508877
KEGG:bta:508877 NextBio:20868715 Uniprot:E1BIQ0
Length = 783
Score = 136 (52.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 60/239 (25%), Positives = 107/239 (44%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GS++F+ G T+V+ V + E KS ++
Sbjct: 358 RCDGRDLTSLRNINCEVDMFKILHGSSLFQRGQTQVLCTVTFDSLESNFKSDRIITAING 417
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + Y ++T + + K G +RR + + + ++ P + I +
Sbjct: 418 IKDKNFM-LHYEFPPYATNE-IGKVTGINRRELGHGALAERALYP-VIPKDFPFT-IRVT 473
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN-STP----------LLDL 169
+VL+++G + A +LAL DAG+P+ V + G + ++P L D+
Sbjct: 474 SEVLESNGSSSMASACGGSLALMDAGVPISSAVAGVAIGLVTKNSPDKGEIEDYRLLTDI 533
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
+ED G D+ I T +T LQ D KLP + VM+ AI+ I +++
Sbjct: 534 LGIEDYHG--DMDFKIAGTSKGITALQADIKLPGIPIKIVME-AIQQASVAKKEILQIM 589
>UNIPROTKB|G4MSP2 [details] [associations]
symbol:MGG_07084 "3' exoribonuclease" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:CM001232 KO:K12587 RefSeq:XP_003715270.1
ProteinModelPortal:G4MSP2 EnsemblFungi:MGG_07084T0 GeneID:2682969
KEGG:mgr:MGG_07084 Uniprot:G4MSP2
Length = 302
Score = 96 (38.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 40/153 (26%), Positives = 64/153 (41%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEM---------GNT-----KVIAAVYGPR 53
G R R P +R++ + G A GSA E+ G T K+ V+GPR
Sbjct: 29 GPRTRSRPPNAIRKIFLKTGITPSASGSAYLEIENPVVSGKEGETSTSGLKLSCTVHGPR 88
Query: 54 EVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMP 113
+ +S S ++ A F+T R R D ++S+ + + I+ P
Sbjct: 89 ALP-RSTPFSPHIILSTHIKYAPFATKQR-RGYIRDSTERDLSVHLETALRGVIIADRWP 146
Query: 114 RSQIDIFVQVLQADGGTRSACINAATLALQDAG 146
+S +D+ V V++ D R L LQD+G
Sbjct: 147 KSGVDVIVSVIEGDQDRR--------LPLQDSG 171
Score = 64 (27.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 26/91 (28%), Positives = 38/91 (41%)
Query: 132 SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDK 191
S CI A+ AL DAGI D+V A + D + + GG V + DK
Sbjct: 184 SGCITVASAALADAGIDCVDMVAGGVAALVRD----DSDGAKSVEGGSIVVDPVPAEHDK 239
Query: 192 VTLLQMDAKLPTNTFEDVMQLAIEGCKAVAN 222
+ A LP ++V L +G A ++
Sbjct: 240 IVAACCVAYLPNR--DEVTNLWFKGDAAASD 268
>TAIR|locus:2202705 [details] [associations]
symbol:AT1G60080 "AT1G60080" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC005966 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 OMA:ECINRAT EMBL:BT004614
EMBL:AK227971 IPI:IPI00541560 PIR:D96625 RefSeq:NP_176216.1
UniGene:At.36723 ProteinModelPortal:Q9ZUI4 SMR:Q9ZUI4 IntAct:Q9ZUI4
STRING:Q9ZUI4 PaxDb:Q9ZUI4 PRIDE:Q9ZUI4 EnsemblPlants:AT1G60080.1
GeneID:842303 KEGG:ath:AT1G60080 TAIR:At1g60080 InParanoid:Q9ZUI4
PhylomeDB:Q9ZUI4 ProtClustDB:CLSN2679723 Genevestigator:Q9ZUI4
Uniprot:Q9ZUI4
Length = 302
Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
Identities = 45/152 (29%), Positives = 70/152 (46%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
E LR DGR+ + R +G V+ ADGSA+ ++G+T ++AA+ EV S D+
Sbjct: 34 ESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIR--MEVMTPSTDSPDEG 91
Query: 67 LVRCEYSMANF-STGDRMRKPK------GDRRS-TEISLVIRQTMEACILTHLMP-RSQI 117
+ E+ M S R +P R S T +S + E C+++ +
Sbjct: 92 CIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAAWMGYL 151
Query: 118 DIFVQVLQADGGTRSACINAATLALQDAGIPM 149
DI+ L ADG A + AA A + IP+
Sbjct: 152 DIYC--LDADGALFDAALLAAVAAFSNLQIPI 181
>UNIPROTKB|H7BZ02 [details] [associations]
symbol:PNPT1 "Polyribonucleotide nucleotidyltransferase 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006402 "mRNA catabolic process"
evidence=IEA] InterPro:IPR012162 InterPro:IPR015848 Pfam:PF03726
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AC015982
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 HGNC:HGNC:23166 ProteinModelPortal:H7BZ02
SMR:H7BZ02 Ensembl:ENST00000402246 Bgee:H7BZ02 Uniprot:H7BZ02
Length = 537
Score = 113 (44.8 bits), Expect = 0.00078, P = 0.00078
Identities = 41/164 (25%), Positives = 75/164 (45%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQQM------ 62
R DGR T +R + E+ GSA+F+ G T+V+ V + E KS Q+
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
Query: 63 -SDQALVRCEYSMANFSTGDRMRKPKG-DRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
D+ + Y ++T + + K G +RR + + + ++ P + I +
Sbjct: 418 IKDKNFM-LHYEFPPYATNE-IGKVTGLNRRELGHGALAEKALYP-VIPRDFPFT-IRVT 473
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNST 164
+VL+++G + A +LAL D+G+P+ V + G + T
Sbjct: 474 SEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKT 517
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 241 241 0.00094 113 3 11 22 0.42 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 91
No. of states in DFA: 555 (59 KB)
Total size of DFA: 152 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.20u 0.17s 19.37t Elapsed: 00:00:01
Total cpu time: 19.22u 0.17s 19.39t Elapsed: 00:00:01
Start: Fri May 10 05:13:12 2013 End: Fri May 10 05:13:13 2013