BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026262
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 261 bits (667), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 175/235 (74%), Gaps = 1/235 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ ++S
Sbjct: 4 LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MD++L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHVQE 238
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 260 bits (665), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 175/235 (74%), Gaps = 1/235 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MDA+L + E V++ A + + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 259 bits (662), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 174/235 (74%), Gaps = 1/235 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQ-NKS 59
+E +S +G R+DGRR E+R+++A +G A+ADGSA E GNTK +A VYGP E++ +++
Sbjct: 4 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDI 119
+ + D+ALV C+YS A FSTG+R R+P GDR+S E+ L +RQT EA ILT L PRSQIDI
Sbjct: 64 RALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 120 FVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGP 179
+VQVLQADGGT +AC+NAATLA+ DAGIPMRD V +CSAG+++ T L DL++VE++AGGP
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGP 183
Query: 180 DVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
+ + +LP ++ LL+MDA+L + E V++ A + V + V+ ++ ++
Sbjct: 184 QLALALLPASGQIALLEMDARLHEDHLEQVLEAAARASRDVHTVLDRVVRQHVQE 238
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 156/231 (67%), Gaps = 1/231 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G KV+AAVYGPRE+ K
Sbjct: 8 LKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E +L H+ PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+++LQAD GTR A I AA+LAL DAGIPM+D+V +C+AG ++ +LDLN ED+ G D
Sbjct: 127 IEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEK 237
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 153/231 (66%), Gaps = 1/231 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G RLDGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +CSAG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
V V I+P + +TLLQMD L F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEK 237
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 154/231 (66%), Gaps = 1/231 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ IDIF
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEK 237
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 224 bits (571), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 153/231 (66%), Gaps = 1/231 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGRR E+R++ E+G + ADGSA E G K++AAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A++R Y+MA FS +R +KP DRRS EIS VIR +E ++ + PR+ +D+F
Sbjct: 68 QRPDTAVLRVRYNMAPFSVEER-KKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAG+PMRD+V +C+AG ++ +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
V V I+P + +TLLQMD L F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEK 237
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 1/231 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ E+G + A+GSA E G K+IAAVYGPRE+ K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
V V I+P + +TLLQMD L + F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEK 237
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 154/231 (66%), Gaps = 1/231 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ + G R+DGR+ E+R ++ ++G + A+GSA E G K+IAAVYGPRE+ +K
Sbjct: 8 LKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHL 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D+A++R Y+MA FS +R +KP DRRS EIS VI+ +E ++ + PR+ ID+F
Sbjct: 68 QRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A I AA+LAL DAGIPMRD+V +C+AG + +LDLN ED+ G D
Sbjct: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
V V I+P + +TLLQMD L F + ++LAI+G KAV RE L E
Sbjct: 187 VPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEK 237
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 221 bits (562), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 151/229 (65%), Gaps = 1/229 (0%)
Query: 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQM 62
+S +GLRLDGR+P EMR L+ + G + +ADGSA E+G K++AAVYGPRE+ + +Q
Sbjct: 8 LISEDGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQK 67
Query: 63 SDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQ 122
D+A+VR Y+MA FS +R R P DRRS EIS + ++ +E I T PR+ IDIFV+
Sbjct: 68 PDRAVVRFRYNMAPFSVDERKR-PGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVE 126
Query: 123 VLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVT 182
VLQAD GTR A I+AA++AL DAGI MRD+V +C+AG + +LD Y ED G DV
Sbjct: 127 VLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVP 186
Query: 183 VGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231
+ ++P K+TLLQMD + F+ ++LA +GCK V R L E
Sbjct: 187 LAMMPKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKEK 235
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 213 bits (543), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 151/229 (65%), Gaps = 1/229 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLRLDGR+P EMR ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A+
Sbjct: 14 GLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAV 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL L PR+ ID+F++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR + AA++AL DAGIPMRD++ + G + +LDLN ED G D+ V ++P
Sbjct: 133 AGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMP 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 236
+L +V LLQ++ + F +++A +G + + N +E + +L+
Sbjct: 193 SLKQVALLQLNGNMTPQEFRQALEMAQKGIETIYNLEKEAIRSKYAELK 241
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 211 bits (536), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 150/232 (64%), Gaps = 3/232 (1%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR+P E+R ++ E+G + ADGSA+FEMGNTK IAAVYGP+E+ + + D+A
Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRA 75
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y M FST +R + P RR E+S VIR+ +E+ +L L PR+ ID+F ++LQA
Sbjct: 76 VLRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQA 134
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R + AA+LAL DAGIPMRD++ + G + +LDLN ED G D+ + ++
Sbjct: 135 DAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMM 194
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECR 238
P+L++VTL Q++ + + F LA++G + N RE L +K +E +
Sbjct: 195 PSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREAL--KSKYVEFK 244
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 154/233 (66%), Gaps = 1/233 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
+R DGR P ++R +R E+G ++ ADGSA+ E G T+VIAAVYGPRE + + D+A+
Sbjct: 23 AIRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAI 82
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+RC Y MA FST +R + P RR E+S VIR+ +EA +++ L PR+ ID++++VLQ+D
Sbjct: 83 IRCRYHMAPFSTAER-KTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSD 141
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GGTR+A I AA+LAL DAGI MRD+V + G ++ +LD++ +ED+ D+ V + P
Sbjct: 142 GGTRTAAITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAP 201
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG 240
+LDKV LLQ++ L + F ++LA +G + + N +E L + ++ G
Sbjct: 202 SLDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSVEEG 254
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 140/220 (63%), Gaps = 1/220 (0%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R DGR E+R L+ E G + +ADGS+ E G K++ AVYGPRE Q + Q D+A++
Sbjct: 16 VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75
Query: 69 RCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADG 128
RC Y+MA FS +R R P DRRS EIS + + + ++ PRS ID+F++VL+A+G
Sbjct: 76 RCRYNMAPFSVEERKR-PGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134
Query: 129 GTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPT 188
GTR A I AA++AL DAGIPMRD+V +C+AG + +LDL+ ED G DV V ILP
Sbjct: 135 GTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPR 194
Query: 189 LDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
++TLLQ D L FE + LA+EGC + +E L
Sbjct: 195 TREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEAL 234
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 149/229 (65%), Gaps = 4/229 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
+ ++ +GLRLDGRR E+R ++ E+G +++ADGS E G K++ V+GPRE +
Sbjct: 8 LTLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRS 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q +D A++R Y+MA+FS DR R P RRS EIS V R+ E I+ L P++ IDIF
Sbjct: 68 QRADSAVIRYRYNMASFSVEDRAR-PGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
V+VLQAD GTR+A INA+++AL DAGIPM+ ++TSC+ G ++ +LDLN ED+ G D
Sbjct: 127 VEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEAD 186
Query: 181 VTVGILPTLD-KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
V + T D ++TL+QMD L + + ++L +GCK + + VL
Sbjct: 187 FPVAM--TQDGEITLIQMDGNLTPDEIKQGLELVKKGCKEILEIQQAVL 233
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 145/233 (62%), Gaps = 1/233 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ E G + +ADGSA E G K+I VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R R P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAVVKARYNMAAFSVDERKR-PGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A + AAT+AL DAGIPMRD+V C+AG ++ +LDL+ ED+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEAD 187
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233
+ + I+P ++ LLQMD + + F + + IE K ++ R LL K
Sbjct: 188 IPMAIMPKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNKYK 240
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 140/221 (63%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G ++ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
L + TLLQ+D + + + LA++G + V R+ L
Sbjct: 192 NLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDAL 232
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 142/221 (64%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR P +MR+++ ++G V+ ADGSAV G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GLRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
L + TLLQ+D F + + LA++G + V RE L
Sbjct: 192 NLRRFTLLQLDGAWTREKFLEALGLAVKGAEYVYQVAREAL 232
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 139/221 (62%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E ++ PRS+ID+F+++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAG+ MRD+V S G ++ +LDLN +ED G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
L + TLLQ+D + F + + LAI+G + V R+ L
Sbjct: 192 NLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDAL 232
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 193 bits (491), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 144/233 (61%), Gaps = 1/233 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
++ ++ + LRLDGR E+R ++ + G + +ADGSA E G K++ VYGP+E K
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHS 68
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
Q D A+V+ Y+MA FS +R ++P DRR+ EIS VI + + + I+ PR++ID++
Sbjct: 69 QDIDHAIVKARYNMAAFSVDER-KRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVY 127
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQAD GTR A + AAT+AL DAG+PMRD+V C+AG ++ +LDL+ ED+ G D
Sbjct: 128 IEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEAD 187
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233
+ + I+P + L+QMD + + M + E K ++ RE LL K
Sbjct: 188 IPIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQREALLNKYK 240
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 193 bits (491), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 150/231 (64%), Gaps = 3/231 (1%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
GLR DGR+ E+R ++ E+G + ADGSA+FEMGNTKVIAAVYGP+E+ + + D+A
Sbjct: 14 GLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKAS 73
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y M FST +R + P RR E+S VIR+ +E+ IL +L PR+ IDIF++VLQAD
Sbjct: 74 LRVRYHMTPFSTDER-KNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQAD 132
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GTR + AA++AL DAGIPMRD++ + G + + +LDLN ED G D+ + +LP
Sbjct: 133 AGTRLVALMAASMALADAGIPMRDLIAGVAVGKADGSLVLDLNEQEDMWGEADMPIAVLP 192
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECR 238
+L +V LLQ++ + + F +LA +G ++ +E L K LE +
Sbjct: 193 SLGQVVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEAL--KNKYLEYK 241
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 142/228 (62%), Gaps = 1/228 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M + G R DGR E R++ + G + ADGS+ E G+ K++ V+GPR+V K
Sbjct: 8 MVLMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHM 67
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D ++R Y M FS G+R + P RR EIS VI++ +E ++ PR+ +D+F
Sbjct: 68 SDTDTGILRVRYHMEPFSVGER-KNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVF 126
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
++VLQADGGTR A + AA++AL DAGIPMRD+V + +AG + T +LD+N ED AG D
Sbjct: 127 IEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQAD 186
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
+ +G +P L+K+TLLQ+D L ++ +Q+ ++GCK V ++ L
Sbjct: 187 MPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCKLVYELQKKAL 234
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 139/221 (62%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS ++R+ +E I+ PRS+ID+FV++LQAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ T +LDLN +ED G D+ +G +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
L + TLLQ+D + F + LA+ G + V R+ L
Sbjct: 192 NLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDAL 232
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 143/226 (63%), Gaps = 4/226 (1%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+GLRLDGR+ E+R ++ E + +ADGS EMG KVIAAV+GPREV + Q +A
Sbjct: 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
++R Y+MA FS +R R P DRRS EIS V ++ EA I+ L PRS IDIFV+VLQA
Sbjct: 74 IIRYRYNMAPFSVEERKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
D G+R+AC+NAA++AL DAG+PM+ ++TS + G + +LD ED+ G D+ L
Sbjct: 133 DAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFL 192
Query: 187 ---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 229
++ + LLQMD ++ + + ++LA +G + RE +L
Sbjct: 193 IRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAIL 238
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E S+
Sbjct: 1 MSIISEHGFRMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYE-SKASK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R +P+GDR+STEIS ++ + E+ ILT PRSQIDIF
Sbjct: 60 RLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G + + P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSVVMDAAKATCADV 219
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 137/222 (61%), Gaps = 1/222 (0%)
Query: 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQA 66
+G R DGR P ++R +R ++G + ADGSA+ E G T+V+AAVYGPRE + + D+A
Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRA 73
Query: 67 LVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQA 126
+R Y MA FST +R + P RR E+S V+R+ +E +L PR+ ID+F++VLQA
Sbjct: 74 ALRVRYHMAPFSTDER-KSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQA 132
Query: 127 DGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGIL 186
DGGTR+A + AA+LAL DAGIPMR +V + G + ++D++ +ED G D+ V
Sbjct: 133 DGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAA 192
Query: 187 PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
P + ++TLLQ++ L F + +A+ V +E +
Sbjct: 193 PDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAI 234
>sp|A0RXU1|ECX1_CENSY Probable exosome complex exonuclease 1 OS=Cenarchaeum symbiosum
(strain A) GN=CENSYa_1536 PE=3 SV=1
Length = 243
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 146/221 (66%), Gaps = 1/221 (0%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR+ +E R++ G + A+GSA E G+ K++A ++GPR+V K ++ +
Sbjct: 15 GIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTETGI 74
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+RC Y M+ FS +R +KP RR EIS VI++ +E ++ PR+ +D+F++VLQAD
Sbjct: 75 LRCRYHMSPFSVSER-KKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQAD 133
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
GG+R A + AA++AL DAGIPMRD+V++C+AG + T +LD+N ED AG D+ VG +P
Sbjct: 134 GGSRCAALAAASVALADAGIPMRDMVSACAAGKVADTIVLDVNNEEDQAGQADMPVGYMP 193
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
LD+VTL+Q+D L + + +AI+GCK V ++ L
Sbjct: 194 NLDQVTLIQLDGVLTPDEYSRCAAMAIDGCKQVYEVQKKAL 234
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 138/221 (62%)
Query: 8 GLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQAL 67
G+R DGR P +MR+++ +G V+ ADGSA+ G T +AAVYGPRE+ + + D+ +
Sbjct: 12 GVRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGV 71
Query: 68 VRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQAD 127
+R Y MA FST D + P RR EIS V+R+ +E +L PRS+ID+F++++QAD
Sbjct: 72 MRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQAD 131
Query: 128 GGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILP 187
G TR A + AA+LAL DAGI MRD+V S G ++ +LDLN +ED+ G D+ VG +P
Sbjct: 132 GSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMP 191
Query: 188 TLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
L + LLQ+D F + LA++G + V R+ L
Sbjct: 192 NLKRFVLLQLDGAWKREVFLQALNLAVKGAEYVYQIARDAL 232
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 136/220 (61%), Gaps = 1/220 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
M +S G R+DGRRP ++R + +G A+GS E GNTKV+ AVYGP E ++ S+
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKS-SK 59
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
++ D+ + C+YS FS +R + +GDR+STEIS ++ + E+ ILT PRSQ+DIF
Sbjct: 60 RIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF 119
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+V+Q DG +AC+NA +LAL DAGIPM+ I ++ + G ++ P++DL E++ P
Sbjct: 120 CEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLPR 179
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAV 220
VT+ + D+V L+++ +L + VM A C V
Sbjct: 180 VTLATICGRDEVILVELQNRLHIDHLSTVMDAAKATCADV 219
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 140/233 (60%), Gaps = 1/233 (0%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQ 60
E +S EGLR DGRR EMR + IG +GSA E+GNTKV+ V GP E KS+
Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 61 QMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
+D+ V E ++A+FST D ++ K DRR L ++ T E I T L PRSQI ++
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 121 VQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD 180
+ VLQ DG ++CINA TLAL DAGIP++D V +AG + S LLDLN +E+SA
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESALSW- 182
Query: 181 VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233
+TV +L + KV +Q++ + + E VM +AI G + + N ++ + ++ K
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQSAK 235
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 142/236 (60%), Gaps = 3/236 (1%)
Query: 1 MEFVSPEGLRLDGRRPTEMRQLRAEIG-NVAKADGSAVFEMGNTKVIAAVYGPREVQNKS 59
+E SPEGLRLDGRR E+R+ + I + ADGS+ E GN K+I V GP+E + KS
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 60 QQMSDQALVRCEYSMANFSTGDRMRKP-KGDRRSTEISLVIRQTMEACILTHLMPRSQID 118
Q + +AL+ ++ FS +R + K +RR EI + + E ++ ++ PR+ ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGG 178
I + VL+ DGG + IN TLAL DAGI M D ++ S G ++TPLLD N +E++A
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMS 183
Query: 179 PDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
VT+G++ +K++LL ++ K+P + E+V+ + I G V + + E L ++ ++
Sbjct: 184 T-VTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQK 238
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%)
Query: 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD 64
S +G+R +G ++R + A G V++A GSA E GNTK+I +VYGP+E + + +
Sbjct: 32 SRQGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMK 87
Query: 65 QALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
+ C++ +A FS R +G ++S + +++ + H PRSQID+ V VL
Sbjct: 88 TGRLVCDFRLAPFSCVKRGAWIQGSEER-DLSATLMESLRPGVCLHRYPRSQIDVNVMVL 146
Query: 125 QADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPD---- 180
+ DG + + A++AL DAGI M DIV C+ + L+D +Y E+ +
Sbjct: 147 ENDGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGD 206
Query: 181 ----VTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234
VT+ +LP L++V+ L D ++ +T + M+ ++GC + +++ L K+
Sbjct: 207 NQGCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKK 264
>sp|A5G3S1|RNPH_GEOUR Ribonuclease PH OS=Geobacter uraniireducens (strain Rf4) GN=rph
PE=3 SV=1
Length = 238
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 28/242 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R+++ + A+GS + E G+TKVI A+V G P ++ K
Sbjct: 1 MRFDGRGAESLREVKITRNYLKHAEGSVLIEFGDTKVICTASVEGSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + +L+ + I
Sbjct: 57 -GWVTAEYSMLPRATHTRSHRESSKGKVGGRTHEIQRLIGRSLRAVMDMNLLGERSVLID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA +P+++ V + S G ++ TPLLDL
Sbjct: 116 CDVIQADGGTRTASITGAYVALYDALDGLVKKGELAAMPLKEAVAAVSVGIVDGTPLLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQ-LAIEGCKAVANYIRE 226
NYVEDS+ D+ ++ + ++ +Q A+ T E D M+ LAI G K + +E
Sbjct: 176 NYVEDSSAEVDMNF-VMTSSNRFVEVQGTAEAEPFTVEQMDAMRDLAISGIKRLFQIQKE 234
Query: 227 VL 228
L
Sbjct: 235 AL 236
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 129/245 (52%), Gaps = 14/245 (5%)
Query: 1 MEFVSPEGLRLDGRR---PTEMRQLRAEIGNVAKADGSAVFEMGN--TKVIAAVYGPREV 55
+ +S EG + GRR P+E R + G +++A GSA E G+ TKV+ AV+GPRE
Sbjct: 19 LYVLSEEGGKAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRER 78
Query: 56 QNKSQQMSDQALVRCEYSMANFST-GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPR 114
++ + + C+ A FS G + L +++++E + PR
Sbjct: 79 GMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPR 138
Query: 115 SQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP----LLDLN 170
+++ ++V VL+ G A ++ A+LAL DAGI M D+ C L+ P LLD +
Sbjct: 139 AEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGCG---LSRGPGGELLLDPD 195
Query: 171 YVEDSAG-GPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 229
E+ AG G +++ +LPTL++V+ L + + E+ ++L +EGC+ + + + L+
Sbjct: 196 DDEEEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVLHQCLV 255
Query: 230 ENTKQ 234
+ TK+
Sbjct: 256 KATKR 260
>sp|B9M3E3|RNPH_GEOSF Ribonuclease PH OS=Geobacter sp. (strain FRC-32) GN=rph PE=3 SV=1
Length = 238
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 28/242 (11%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYG--PREVQNKSQQMSD 64
+R DGR +R++R + A+GS + E G+TKVI A+V P ++ K
Sbjct: 1 MRFDGRGEGSLREVRITRNYIKHAEGSVLVEFGDTKVICTASVESSVPPFLRGKGT---- 56
Query: 65 QALVRCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EYSM +T R K K R+ EI +I +++ A + L+ I I
Sbjct: 57 -GWVTAEYSMLPRATHSRSPREAAKGKVGGRTHEIQRLIGRSLRAVVDMSLLGERSIIID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA +P+R+ V + S G + +LDL
Sbjct: 116 CDVIQADGGTRTASITGAYVALCDALQGLVAKGELSSLPIREAVAAVSVGIVGGVAVLDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE--DVMQ-LAIEGCKAVANYIRE 226
NYVEDSA D+ ++ + ++ +Q A+ T E D M+ LA++G K + +
Sbjct: 176 NYVEDSAAEVDMNF-VMTSSNRFVEVQGTAEAEPFTIEQMDAMRTLAVDGIKQLFQIQQA 234
Query: 227 VL 228
VL
Sbjct: 235 VL 236
>sp|B8I1A8|RNPH_CLOCE Ribonuclease PH OS=Clostridium cellulolyticum (strain ATCC 35319 /
DSM 5812 / JCM 6584 / H10) GN=rph PE=3 SV=1
Length = 240
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 24/243 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
LR DGR T++R +R + A+GS + E+G+TKVI + ++ S + V
Sbjct: 2 LRHDGRSNTQLRSVRILRNYIKHAEGSVLIEVGDTKVICTASVEERIP-PFKKDSGEGWV 60
Query: 69 RCEYSMANFSTGDR----MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM +T R + K K + RS+EI +I +++ + L+ I I V+
Sbjct: 61 TAEYSMLPRATAVRNQRDISKLKLNGRSSEIQRLIGRSLRTIVDLKLLGERTITIDCDVI 120
Query: 125 QADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I + +AL DA +P+ V + S G +N LLDL Y+E
Sbjct: 121 QADGGTRTASITGSYVALVDACRTLVKKGLISKMPVTGTVAATSVGIVNGEELLDLCYIE 180
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTF-----EDVMQLAIEGCKAVANYIREVL 228
DS +V + ++ T DK +++ A ++F + ++ LA G + EVL
Sbjct: 181 DS--NAEVDMNVIKT-DKGEFIEIQATGEKSSFSKKQLDQLLNLAESGIHELIKAQNEVL 237
Query: 229 LEN 231
++
Sbjct: 238 WKD 240
>sp|A6VEE1|RNPH_PSEA7 Ribonuclease PH OS=Pseudomonas aeruginosa (strain PA7) GN=rph PE=3
SV=1
Length = 239
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|P50597|RNPH_PSEAE Ribonuclease PH OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1
/ 1C / PRS 101 / LMG 12228) GN=rph PE=1 SV=2
Length = 239
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|Q02E28|RNPH_PSEAB Ribonuclease PH OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=rph PE=3 SV=1
Length = 239
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|B7V5M5|RNPH_PSEA8 Ribonuclease PH OS=Pseudomonas aeruginosa (strain LESB58) GN=rph
PE=3 SV=1
Length = 239
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSDQ 65
R GR ++R +R A+GS + E G+TKVI V PR ++ + Q
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQ----- 57
Query: 66 ALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M STG+R ++ K R+ EI +I +++ A + + + + I
Sbjct: 58 GWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDC 117
Query: 122 QVLQADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLN 170
V+QADGGTR+A I AT+AL DA G P++ +V + S G P+LDL+
Sbjct: 118 DVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLD 177
Query: 171 YVEDSAGGPDVTV 183
Y+EDSA D+ V
Sbjct: 178 YLEDSAAETDLNV 190
>sp|Q6A759|RNPH_PROAC Ribonuclease PH OS=Propionibacterium acnes (strain KPA171202 / DSM
16379) GN=rph PE=3 SV=2
Length = 244
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 115/238 (48%), Gaps = 22/238 (9%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGRR ++R +R E G +++A+GS + G T V+ A+V E + ++ S
Sbjct: 6 RIDGRRLDQLRDVRIERGWLSQAEGSVLVSFGRTTVLCNASVT---EGVPRWRKGSGLGW 62
Query: 68 VRCEYSM----ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY M N +G RK K R+ EIS ++ +++ A + + + I + V
Sbjct: 63 VTAEYEMLPRATNERSGRESRKGKVGGRTHEISRLVGRSLRAVVDDKALGENTIILDCDV 122
Query: 124 LQADGGTRSACINAATLALQDA--------GI---PMRDIVTSCSAGYLNSTPLLDLNYV 172
LQADGGTR+A I A +AL DA G+ P+ V + S G ++ P+LDL Y
Sbjct: 123 LQADGGTRTASITGAYVALIDAVNWLRGRGGLVSEPIIGSVQAISVGVVDGIPMLDLAYK 182
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAKLP--TNTFEDVMQLAIEGCKAVANYIREVL 228
EDS D+ V + D V + P N +++ LA GC + E L
Sbjct: 183 EDSRADTDMNVVMSGNGDFVEIQGTAEGTPFNRNLLNELLDLAAGGCATLKQAQSEAL 240
>sp|Q11B42|RNPH_MESSB Ribonuclease PH OS=Mesorhizobium sp. (strain BNC1) GN=rph PE=3 SV=1
Length = 238
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+P EMR + E G A+GS + G+T V+ +V + S + V
Sbjct: 1 MRPSRRQPDEMRAISFERGVSKHAEGSCLVRFGDTHVLCTASLEEKVPAWLRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI ++ +++ + I + QI + VL
Sbjct: 60 TAEYGMLPRSTGERMRREAASGKQGGRTLEIQRLVGRSLRSVIDLEALGEMQITVDCDVL 119
Query: 125 QADGGTRSACINAATLALQDAGIPM------------RDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D M +D V + S G + TP+LDL+Y
Sbjct: 120 QADGGTRTAAITGGFVALHDCLSWMQARQMVTVERVLKDHVAAISCGIYDGTPVLDLDYA 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDSA D ++ + +Q A+ F ++++LA +G
Sbjct: 180 EDSAAETDANF-VMTGKGGIVEIQGTAEGAPFTEEEFHELLRLARKG 225
>sp|B1VVV6|RNPH_STRGG Ribonuclease PH OS=Streptomyces griseus subsp. griseus (strain JCM
4626 / NBRC 13350) GN=rph PE=3 SV=1
Length = 245
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 96/192 (50%), Gaps = 20/192 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R+DGR P ++R + E G A+GS + G+TKV V + ++ S + V
Sbjct: 3 RIDGRTPEQLRPVTIERGWSKHAEGSVLISFGDTKVFCTASVTEGVP-RWRKGSGEGWVT 61
Query: 70 CEYSMANFST---GDR--MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EYSM ST GDR +R G R + EIS +I +++ A I + + I + VL
Sbjct: 62 AEYSMLPRSTNTRGDREAVRGKIGGR-THEISRLIGRSLRAVIDCKALGENTIVLDCDVL 120
Query: 125 QADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLNY 171
QADGGTR+A I A +AL DA P+ D V + S G ++ TPLLDL Y
Sbjct: 121 QADGGTRTAAITGAYVALADAVAWAQGKKIVKAGRKPLTDTVAAISVGIVDGTPLLDLCY 180
Query: 172 VEDSAGGPDVTV 183
ED D+ V
Sbjct: 181 EEDVRAETDMNV 192
>sp|Q82XJ4|RNPH_NITEU Ribonuclease PH OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=rph PE=3 SV=1
Length = 241
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 18/236 (7%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVR 69
R + R P +MR +R V A+GS + E G T+VI +V + + Q +
Sbjct: 3 RCNNRAPAQMRPVRIIRHYVRHAEGSVLIEYGETRVICTASVIEKV-PPFLKGAGQGWLT 61
Query: 70 CEYSMANFSTGDRMR----KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQ 125
EY M STG+RM+ K K R+ EI +I + + + + + I + V+Q
Sbjct: 62 AEYGMLPRSTGERMQREAAKGKQSGRTMEIQRLIGRALRSILDLEKLGERTIQMDCDVIQ 121
Query: 126 ADGGTRSACINAATLALQDA-----------GIPMRDIVTSCSAGYLNSTPLLDLNYVED 174
ADGGTR+A I A +AL DA P+RD V + S G L PLLDL+Y+ED
Sbjct: 122 ADGGTRTASITGAFVALYDAIDYLRAERMISQNPIRDHVAAVSVGILKGQPLLDLDYLED 181
Query: 175 SAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFE-DVM-QLAIEGCKAVANYIREVL 228
S D+ V + +L V + K+ + E DVM +A +G + + + R+ L
Sbjct: 182 SGCDTDLNVVMTGSLGLVEVQGTAEKVVFSRQELDVMLNMAQQGLQELFDVQRKAL 237
>sp|Q8BTW3|EXOS6_MOUSE Exosome complex component MTR3 OS=Mus musculus GN=Exosc6 PE=1 SV=1
Length = 273
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 122/238 (51%), Gaps = 29/238 (12%)
Query: 14 RRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSD--------- 64
R PT +R + A G +++A GSA E G TKV+ AV GPR+ + +
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGEAPA 90
Query: 65 --QALVRCEYSMANFSTGDRMRKPKG----DRRSTEISLVIRQTMEACILTHLMPRSQID 118
+ + C++ A FS G R R P+G DR E+ L +++ +E + PR+Q++
Sbjct: 91 ALRGRLLCDFRRAPFS-GRRRRAPQGGGGEDR---ELGLALQEALEPAVRLGRYPRAQLE 146
Query: 119 IFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTP------LLDLNYV 172
+ +L+ G +A + AA LAL DAG+ M D+V C L+ TP LLD +
Sbjct: 147 VSALLLEDGGCALAAALTAAALALADAGVEMYDLVVGCG---LSLTPGPSPTWLLDPTRL 203
Query: 173 EDSAGGPDVTVGILPTLDKVT-LLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLL 229
E+ +TV ++P L++V LL T ++ D ++L +EGC+ + +++ L+
Sbjct: 204 EEEHSAAGLTVALMPVLNQVAGLLGSGEGGQTESWTDAVRLGLEGCQRLYPVLQQCLV 261
>sp|Q8E9L4|RNPH_SHEON Ribonuclease PH OS=Shewanella oneidensis (strain MR-1) GN=rph PE=3
SV=1
Length = 237
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 29/239 (12%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG----PREVQNKSQQMSD 64
+R R P + R + A A+GS + E G TKV+ PR ++ + Q
Sbjct: 1 MRPSNRTPAQTRPITITRQFTAHAEGSVLVEFGETKVLCTASFTEGVPRFLKGQGQ---- 56
Query: 65 QALVRCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF 120
V EY M ST RM + K R+ EI +I + + AC+ + + I I
Sbjct: 57 -GWVTAEYGMLPRSTHSRMDREAARGKQSGRTQEIQRLIGRALRACVDMKALGENTIVID 115
Query: 121 VQVLQADGGTRSACINAATLALQDA-------GI----PMRDIVTSCSAGYLNSTPLLDL 169
V+QADGGTR+A I A +AL DA GI P++ ++ + S G N + DL
Sbjct: 116 CDVIQADGGTRTASITGACVALVDALNWARGKGIIKSNPLKFLIAAVSVGIYNGEAISDL 175
Query: 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228
YVEDSA D+ V ++ K+ +Q A+ T E++++L N IRE++
Sbjct: 176 EYVEDSAAETDMNV-VMTETGKIIEIQGTAEGEPFTHEELIEL----LGLAKNSIREIV 229
>sp|Q98DN6|RNPH_RHILO Ribonuclease PH OS=Rhizobium loti (strain MAFF303099) GN=rph PE=3
SV=1
Length = 238
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R+ EMR + E G A+GS + + G+T V+ +V + S + V
Sbjct: 1 MRPSKRQFDEMRAISFERGVSKHAEGSCLVKFGDTHVLCTASLEEKVPGWMRN-SGKGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M STG+RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTGERMRREASAGKQGGRTLEIQRLIGRSLRAVVDLQALGEQQITVDCDVI 119
Query: 125 QADGGTRSACINAATLALQD----------AGIP--MRDIVTSCSAGYLNSTPLLDLNYV 172
QADGGTR+A I +AL D A + ++D V + S G + P++DL+Y+
Sbjct: 120 QADGGTRTASITGGWVALYDCLRWMEARQMASVSKVLKDHVAAISCGIHDGQPVIDLDYL 179
Query: 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEG 216
EDSA G D ++ + +Q A+ + F ++M LA +G
Sbjct: 180 EDSAAGTDANF-VMTGKGGIVEIQGTAEGEPFSEDQFAELMGLAKKG 225
>sp|Q9S2H7|RNPH_STRCO Ribonuclease PH OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rph PE=3 SV=1
Length = 245
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVI--AAVYGPREVQNKSQQMSDQAL 67
R+DGR P ++R + E G A+GS + G+TKV+ A+V E + ++ S +
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNASVT---EGVPRWRKGSGEGW 59
Query: 68 VRCEYSM---ANFSTGDRMR-KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQV 123
V EY+M A + GDR K + R+ EIS +I +++ A I + + + + V
Sbjct: 60 VTAEYAMLPRATNTRGDRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDCDV 119
Query: 124 LQADGGTRSACINAATLALQDAGI-------------PMRDIVTSCSAGYLNSTPLLDLN 170
LQADGGTR+A I A +AL DA P+ V++ S G ++ TPLLDL
Sbjct: 120 LQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLDLR 179
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREV 227
Y ED D+ V + + +Q A+ + ++ LA GC +A R+
Sbjct: 180 YEEDVRADTDMNV-VCTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAELQRKA 238
Query: 228 L 228
L
Sbjct: 239 L 239
>sp|C1DCK5|RNPH_LARHH Ribonuclease PH OS=Laribacter hongkongensis (strain HLHK9) GN=rph
PE=3 SV=1
Length = 238
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALV 68
+R R +E+R +R A+GS + E G+TKVI V + Q V
Sbjct: 1 MRPSQRAASELRPVRFIRHYTRHAEGSVLVEFGDTKVICTATVEESVPGFLKGKG-QGWV 59
Query: 69 RCEYSMANFSTGDRMRKP----KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVL 124
EY M ST RMR+ K R+ EI +I +++ A + + QI + V+
Sbjct: 60 TAEYGMLPRSTHSRMRREAASGKQSGRTQEIQRLIGRSLRAVVDLQKLGERQIVVDCDVI 119
Query: 125 QADGGTRSACINAATLALQDA--GI---------PMRDIVTSCSAGYLNSTPLLDLNYVE 173
QADGGTR+A I+ A +AL DA G+ P+RD V + S G ++ P+LDL+Y E
Sbjct: 120 QADGGTRTASISGAWVALADAIDGLMAKGLLTENPLRDHVAAVSVGMVDGQPVLDLDYTE 179
Query: 174 DSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFED---VMQLAIEGCKAV 220
DS D+ V ++ +Q A+ + ED ++ LA EG +A+
Sbjct: 180 DSGCDTDMNV-VMTGQGGFVEIQGTAEGVPFSREDMQALLALADEGIRAI 228
>sp|B5YFY8|RNPH_THEYD Ribonuclease PH OS=Thermodesulfovibrio yellowstonii (strain ATCC
51303 / DSM 11347 / YP87) GN=rph PE=3 SV=1
Length = 236
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 23/235 (9%)
Query: 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-MSDQ-- 65
+R DGR+ E+R ++ E + ADGS + E+GNT+VI ++NK + DQ
Sbjct: 1 MRPDGRKNDELRPIKIEKNFIKNADGSVLIELGNTRVICTA----SIENKVPPFLKDQKK 56
Query: 66 ALVRCEYSMANFSTGDRM-RKPKGDR---RSTEISLVIRQTMEACILTHLMPRSQIDIFV 121
+ EY M ST RM R+ R R+ EI +I +T+ A + + I I
Sbjct: 57 GWITAEYGMLPRSTPVRMLRESTSGRVGGRTHEIQRLIGRTLRAVVDLEKLGERTIWIDC 116
Query: 122 QVLQADGGTRSACINAATLAL-------QDAGI----PMRDIVTSCSAGYLNSTPLLDLN 170
V++ADGGTR+A I +AL +AG+ P++D + + S G + P LDL
Sbjct: 117 DVIEADGGTRTASITGGYIALVEAVKKAMNAGMITENPIKDSIAAISVGIVLGEPRLDLC 176
Query: 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIR 225
Y EDS D+ + ++ K +Q A++ + E+++QL K + IR
Sbjct: 177 YAEDSQAEVDMNI-VMTGSGKFIEIQGTAEIYPFSKENLLQLLSLAEKGIREIIR 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,000,074
Number of Sequences: 539616
Number of extensions: 3340458
Number of successful extensions: 11204
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 7794
Number of HSP's gapped (non-prelim): 1747
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)