Query 026262
Match_columns 241
No_of_seqs 126 out of 1154
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02065 ECX1 archaeal exosom 100.0 5.8E-54 1.2E-58 359.4 30.2 228 3-231 2-229 (230)
2 PRK03983 exosome complex exonu 100.0 1E-53 2.2E-58 360.9 30.4 234 2-236 7-240 (244)
3 KOG1068 Exosomal 3'-5' exoribo 100.0 2.3E-51 5E-56 334.9 21.8 240 1-240 5-244 (245)
4 PRK00173 rph ribonuclease PH; 100.0 6.1E-48 1.3E-52 324.4 27.8 219 9-229 1-237 (238)
5 COG0689 Rph RNase PH [Translat 100.0 8.4E-48 1.8E-52 315.4 24.7 225 4-228 3-229 (230)
6 TIGR01966 RNasePH ribonuclease 100.0 3.6E-47 7.7E-52 319.4 28.3 217 10-228 1-235 (236)
7 PRK04282 exosome complex RNA-b 100.0 1.1E-45 2.3E-50 316.7 25.3 222 4-229 19-270 (271)
8 COG2123 RNase PH-related exori 100.0 4.8E-43 1E-47 290.0 25.4 222 4-229 18-271 (272)
9 TIGR03591 polynuc_phos polyrib 100.0 8.7E-43 1.9E-47 329.6 29.0 230 2-234 303-544 (684)
10 PRK11824 polynucleotide phosph 100.0 3E-42 6.5E-47 326.7 28.3 230 2-234 307-547 (693)
11 KOG1069 Exosomal 3'-5' exoribo 100.0 1.7E-41 3.7E-46 267.6 18.3 208 18-235 4-215 (217)
12 TIGR02696 pppGpp_PNP guanosine 100.0 1.2E-40 2.6E-45 310.5 25.1 228 1-231 327-569 (719)
13 PLN00207 polyribonucleotide nu 100.0 2.7E-39 5.8E-44 307.1 27.9 230 2-234 431-678 (891)
14 KOG1614 Exosomal 3'-5' exoribo 100.0 3.7E-39 8E-44 261.0 23.0 229 4-239 17-280 (291)
15 TIGR03591 polynuc_phos polyrib 100.0 1.6E-32 3.5E-37 259.9 25.7 204 20-234 5-220 (684)
16 KOG1612 Exosomal 3'-5' exoribo 100.0 1.7E-31 3.7E-36 217.7 24.4 222 6-232 18-278 (288)
17 KOG1613 Exosomal 3'-5' exoribo 100.0 9.4E-33 2E-37 223.4 15.7 217 4-224 31-296 (298)
18 PRK11824 polynucleotide phosph 100.0 2.2E-31 4.7E-36 252.7 26.5 206 19-232 13-227 (693)
19 PF01138 RNase_PH: 3' exoribon 100.0 5E-30 1.1E-34 197.0 16.6 130 18-148 1-132 (132)
20 PLN00207 polyribonucleotide nu 100.0 1.4E-27 3E-32 227.4 21.4 207 20-234 89-304 (891)
21 KOG1067 Predicted RNA-binding 99.9 4.6E-25 1E-29 196.9 15.0 221 3-231 352-587 (760)
22 COG1185 Pnp Polyribonucleotide 99.9 5.8E-24 1.3E-28 195.1 16.1 229 3-234 306-545 (692)
23 TIGR02696 pppGpp_PNP guanosine 99.8 4.3E-19 9.3E-24 166.5 20.6 207 20-232 17-248 (719)
24 COG1185 Pnp Polyribonucleotide 99.7 9.5E-17 2.1E-21 147.9 19.0 204 20-232 14-226 (692)
25 KOG1067 Predicted RNA-binding 99.7 7.3E-16 1.6E-20 138.4 11.9 209 18-235 54-271 (760)
26 PF03725 RNase_PH_C: 3' exorib 99.3 5E-12 1.1E-16 85.7 7.3 66 151-216 1-68 (68)
27 PF12651 RHH_3: Ribbon-helix-h 54.7 28 0.00061 21.0 3.7 36 199-234 7-42 (44)
28 PF01402 RHH_1: Ribbon-helix-h 51.2 22 0.00047 20.4 2.8 34 201-234 6-39 (39)
29 PF09695 YtfJ_HI0045: Bacteria 46.9 83 0.0018 24.8 6.1 32 182-215 128-159 (160)
30 PF03333 PapB: Adhesin biosynt 46.5 26 0.00055 24.9 3.0 39 198-236 20-58 (91)
31 PF02575 YbaB_DNA_bd: YbaB/Ebf 40.5 1.2E+02 0.0027 20.9 8.5 55 175-230 26-85 (93)
32 PHA01748 hypothetical protein 34.2 99 0.0021 19.9 4.1 39 200-238 8-46 (60)
33 PHA01623 hypothetical protein 29.0 1.2E+02 0.0027 19.2 3.9 36 200-235 19-54 (56)
34 PRK14626 hypothetical protein; 27.0 2.6E+02 0.0055 20.5 7.2 47 173-220 34-84 (110)
35 PF09107 SelB-wing_3: Elongati 26.8 68 0.0015 20.0 2.3 29 198-226 8-36 (50)
36 KOG2925 Predicted translation 25.8 27 0.00058 27.1 0.4 40 162-201 64-103 (167)
37 PRK15215 fimbriae biosynthesis 22.9 1.1E+02 0.0025 22.0 3.1 37 199-235 29-65 (100)
38 PF13974 YebO: YebO-like prote 22.4 1.8E+02 0.0039 20.1 3.9 30 210-239 18-47 (80)
39 PRK14627 hypothetical protein; 21.1 3.2E+02 0.007 19.6 7.6 50 173-223 30-83 (100)
40 KOG0257 Kynurenine aminotransf 21.0 6.6E+02 0.014 23.1 8.5 107 94-217 73-205 (420)
No 1
>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1. This family contains the archaeal protein orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt.
Probab=100.00 E-value=5.8e-54 Score=359.43 Aligned_cols=228 Identities=46% Similarity=0.770 Sum_probs=215.4
Q ss_pred ccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc
Q 026262 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR 82 (241)
Q Consensus 3 ~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 82 (241)
.|+++|+|+|||.++|+|++++++|+++++||||++++|+|+|+|+|+||++.+.+....++++.++|++++.||++..+
T Consensus 2 ~~~~~~~R~DGR~~~e~R~~~~~~g~~~~a~GSa~~~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~a~~~~ 81 (230)
T TIGR02065 2 LILEDGVRLDGRKPDELRPIKIEAGVLKNADGSAYVEFGGTKIIAAVYGPREMHPRHLQLPDRAVLRVRYHMAPFSTDER 81 (230)
T ss_pred cccCCCcCCCCCCcccccCeEEEECCCCCCCeEEEEEECCcEEEEEEeCCCccccccccCCCceEEEEEEEeCCcccCCc
Confidence 57899999999999999999999999999999999999999999999999988766666789999999999999998765
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeC
Q 026262 83 MRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLN 162 (241)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~ 162 (241)
+.. .+++++.+++++|++++++++.++.||++.|+|+++||++||++++|++||+++||.|+||||+++++++++++++
T Consensus 82 ~~~-~~~~~~~~~s~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~DG~~~~aai~aa~lAL~dagIp~~~~v~avtv~~~~ 160 (230)
T TIGR02065 82 KRP-GPSRREIEISKVIREALEPAILLEQFPRTAIDVFIEVLQADAGTRCAGLTAASLALADAGIPMRDLVVGVAVGKVD 160 (230)
T ss_pred cCC-CCCccHHHHHHHHHHHHHHHhChhhcCCeEEEEEEEEEEcCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEEEC
Confidence 543 4677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 163 STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231 (241)
Q Consensus 163 ~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~ 231 (241)
+.+|+|||.+||..+.+.++|+++++.+++++++++|.++++++.++++.|.++|++++++|++.|+++
T Consensus 161 ~~~v~Dpt~~Ee~~~~~~l~va~~~~~~~i~~i~~~g~~~~e~~~~~l~~a~~~~~~l~~~~~~~l~~~ 229 (230)
T TIGR02065 161 GVVVLDLNEEEDMYGEADMPVAMMPKLGEITLLQLDGDMTPDEFRQALDLAVKGIKIIYQIQREALKNK 229 (230)
T ss_pred CeEEECCCHHHhhcCCCceEEEEeCCCCCEEEEEEecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998888999999999999999999999999999999999999999876
No 2
>PRK03983 exosome complex exonuclease Rrp41; Provisional
Probab=100.00 E-value=1e-53 Score=360.93 Aligned_cols=234 Identities=47% Similarity=0.789 Sum_probs=220.1
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccc
Q 026262 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~ 81 (241)
+|++++|+|+|||.++|+|++++++|++++++|||++++|+|+|+|+|+||.+...+....++++.+.|++++.|+++..
T Consensus 7 ~~~~~~~~R~DGR~~~~~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~p~~~~~ 86 (244)
T PRK03983 7 KLILEDGLRLDGRKPDELRPIKIEVGVLKNADGSAYLEWGNNKIIAAVYGPREMHPRHLQLPDRAVLRVRYNMAPFSVDE 86 (244)
T ss_pred hhhccCCCCCCCCCcCcccceEEEeCCCCCCCeEEEEEECCeEEEEEEecCCccccccccCCCcEEEEEEEEcCCCcccc
Confidence 58899999999999999999999999999999999999999999999999998877766778999999999999999876
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeee
Q 026262 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~ 161 (241)
+... .+++++.+++++|+++|++++.++.||++.|+|+++||++|||++++++||+++||.|+||||++++++++++++
T Consensus 87 ~~~~-~~~~~~~~~s~~l~~~l~~~i~~~~~p~~~I~I~i~VL~~DG~~~~aai~Aa~lAL~dagIp~~~~v~avtv~~~ 165 (244)
T PRK03983 87 RKRP-GPDRRSIEISKVIREALEPAIMLELFPRTVIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAGCAVGKV 165 (244)
T ss_pred ccCC-CCChhHHHHHHHHHHHHHHhccHHhCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHhcCCccccceeEEEEEEE
Confidence 5433 467788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 162 NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 236 (241)
Q Consensus 162 ~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 236 (241)
++.+++|||..||..+.+.++|+++++.++|++++++|.++++++.++++.|.+.+++++++|+++|+++..+..
T Consensus 166 ~~~~i~DPt~~Ee~~~~~~l~va~~~~~~~I~~l~~~G~~~~~~~~~~i~~A~~~~~~i~~~i~~~l~~~~~~~~ 240 (244)
T PRK03983 166 DGVIVLDLNKEEDNYGEADMPVAIMPRLGEITLLQLDGNLTREEFLEALELAKKGIKRIYQLQREALKSKYGEIA 240 (244)
T ss_pred CCEEEECCCHHHhccCCceEEEEEECCCCCEEEEEEecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999878899999999999999999999999999999999999999999877543
No 3
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-51 Score=334.86 Aligned_cols=240 Identities=54% Similarity=0.854 Sum_probs=226.9
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccc
Q 026262 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (241)
Q Consensus 1 ~~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~ 80 (241)
+++...+|.|.|||.++|+|++..+.|++++++||||+++|||||+|.|+||+|++......++++.++|.++.++|++.
T Consensus 5 ~~~~seeg~r~dgRr~~elR~i~~~~g~~~~a~GSay~E~GnTKVl~aV~GPre~~~~~~~~~~~a~lnc~~~~a~Fst~ 84 (245)
T KOG1068|consen 5 YETLSEEGLRTDGRRPNELRRIYARIGVLTQADGSAYMEQGNTKVLCAVYGPREIRGKSARRPDKAVLNCEVSSAQFSTG 84 (245)
T ss_pred ccccCccccccCCCChhHhhhhhhhcCccccCCccchhhcCCeEEEEEEeCCcccccccccccccceEEEEEeeeccccc
Confidence 57888999999999999999999999999999999999999999999999999987655557899999999999999999
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEee
Q 026262 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~ 160 (241)
++++..+.+.++++++.+|+++|+++|.++.||+++|+|+|+|++|||+.+++|+||+.+||.|+||||+|+++++|+++
T Consensus 85 ~r~~~~~~~rr~~e~s~~L~~afe~~I~~~lyPrsqIDI~v~VleddG~~laa~inaatlAL~daGI~m~D~i~~~t~~l 164 (245)
T KOG1068|consen 85 DRKKRPKGDRREKELSLMLQQAFEPVILLELYPRSQIDIYVQVLEDDGSNLAAAINAATLALADAGIPMYDLITACTAGL 164 (245)
T ss_pred hhccCCCccHHHHHHHHHHHHHHHHHHHhhhCccccceEEEEEEECCCccHHHHHHHHHHHHHHcCCChhhhhhhceeee
Confidence 98765567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 026262 161 LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRRG 240 (241)
Q Consensus 161 ~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~~~~ 240 (241)
.++..++||+..||......+||++.+..++|..+|+++.++.+.|...++.+.+.|+++++.++..+.++.++..-..+
T Consensus 165 ~~~~~l~Dl~~~eesa~~~~ltVa~l~~~~~i~~l~~~~~~~~d~l~~vl~~a~~~c~~v~~~l~~~l~~~l~~~~~~~~ 244 (245)
T KOG1068|consen 165 ADGTPLLDLTSLEESARAPGLTVAALPNREEIALLQLDERLHCDHLETVLELAIAGCKRVYERLRLVLREHLKNAESALS 244 (245)
T ss_pred cCCccccccccchhhccCCceEEEEecCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999988889999998999999999999999999999999999999999999999999999998765543
No 4
>PRK00173 rph ribonuclease PH; Reviewed
Probab=100.00 E-value=6.1e-48 Score=324.39 Aligned_cols=219 Identities=31% Similarity=0.430 Sum_probs=199.5
Q ss_pred CCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC----
Q 026262 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (241)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~---- 84 (241)
+|+|||.++|+|++++++|++++++|||++++|+|+|+|+|+++.+.+ +....+++|.++|+|.++|+++.++..
T Consensus 1 ~R~DGR~~~e~R~i~~~~g~~~~a~GSa~v~~G~T~Vla~V~~~~~~p-~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~ 79 (238)
T PRK00173 1 MRPDGRAADQLRPVTITRNFTKHAEGSVLVEFGDTKVLCTASVEEGVP-RFLKGQGQGWVTAEYGMLPRATHTRNDREAA 79 (238)
T ss_pred CCCCCCCcccccCeEEEeCCCCCCCeeEEEEecCcEEEEEEEcCCCCC-CccCCCCcEEEEEEEecCCCCCccccccccc
Confidence 599999999999999999999999999999999999999999875433 122456889999999999999887632
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhC-----------CCCCCCee
Q 026262 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIV 153 (241)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~-----------gip~~~~~ 153 (241)
.|+++.++.+++++|+++|+++++++.||++.++|+++||++|||+++|++||+++||+|+ ++||+++|
T Consensus 80 ~g~~~~~~~~~sr~i~r~lr~~i~l~~l~~~~i~v~v~VL~~DG~~~~aai~Aa~~AL~da~~~~~~~~~~~~ip~~~~~ 159 (238)
T PRK00173 80 KGKQGGRTQEIQRLIGRSLRAVVDLKALGERTITIDCDVIQADGGTRTASITGAYVALADALNKLVARGKLKKNPLKDQV 159 (238)
T ss_pred CCCCCccHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhhccCcccCCcccCce
Confidence 3466778899999999999999999999998899999999999999999999999999999 99999999
Q ss_pred EEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 154 TSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLL 229 (241)
Q Consensus 154 ~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~ 229 (241)
+++|++++++.+|+|||.+||..+.+.++|++ ++.++|++++++| .++++++.++++.|.+.++++++++++.|.
T Consensus 160 ~~vt~~~~~~~~lvDpt~~Ee~~~~~~l~v~~-~~~~~i~~v~~~g~g~~~~~e~l~~~i~~A~~~~~~l~~~~~~~l~ 237 (238)
T PRK00173 160 AAVSVGIVDGEPVLDLDYEEDSAAETDMNVVM-TGSGGFVEVQGTAEGAPFSREELDALLDLAEKGIAELVALQKAALA 237 (238)
T ss_pred eEEEEEEECCEEEECCCHHHHhcCCceEEEEE-CCCCCEEEEEccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987 5678999999843 699999999999999999999999999885
No 5
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-48 Score=315.40 Aligned_cols=225 Identities=40% Similarity=0.622 Sum_probs=210.6
Q ss_pred cCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccC
Q 026262 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (241)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 83 (241)
...++.|+|||.++|.|++.++.|++++++||+++++|+|+|+|+|+||.|.+.+....++.+++.++|.+.|+++.+|.
T Consensus 3 ~~~~~~R~dgR~~delR~i~~~~~~~~~a~GS~~~~~G~tkVic~vsGp~e~~p~~l~~~~~g~~t~ey~m~p~sT~~R~ 82 (230)
T COG0689 3 ESEDGMRPDGRKPDELRPIKITRGVLKHAEGSSLIEFGNTKVICTVSGPREPVPRFLRGTGKGWLTAEYGMLPRSTDERK 82 (230)
T ss_pred CcccCcCCCCCCcccccceEEEeccccCCCccEEEEeCCeEEEEEEecCCCCCChhhcCCCceEEEEEEecccccccccc
Confidence 45689999999999999999999999999999999999999999999999888777777889999999999999997765
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCC
Q 026262 84 RKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS 163 (241)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~ 163 (241)
.+.....++++++++|.++|+++++++.||+.+|+|++.|+++||+...|++||+++||+|+|+||.++++|+|+|+.++
T Consensus 83 ~~~~~~gR~~eisrli~~al~~~i~L~~~p~~~I~i~~dVlqaDggTrta~It~A~lAL~DAgipl~~~vaaiSvgi~~~ 162 (230)
T COG0689 83 KREADRGRTKEISRLIGRALRAVIDLELLPESTIDIDCDVLQADGGTRTASITGASLALADAGIPLRDLVAAISVGIVDG 162 (230)
T ss_pred cccccccchhHHHHHHHHHHHHHhhhhhcCccEEEEEEEEEECCCCeeeehhhHHHHHHHHcCCchhhheeEeEEEEECC
Confidence 44322237889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeCCccccccCCCcEEEEEcCCCC--cEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 164 TPLLDLNYVEDSAGGPDVTVGILPTLD--KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVL 228 (241)
Q Consensus 164 ~~i~DPt~~Ee~~~~~~~~v~~~~~~~--~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l 228 (241)
.+++||+..|++.+...+.|++.++.+ +|.+++.+|+|+.++|.+++++|.+.|+++++.++++|
T Consensus 163 ~~~lDl~~~Eds~~~~d~~v~~~~~~~~~ei~~~~~~~~~~~del~~lL~la~~g~~~~~~~~~~al 229 (230)
T COG0689 163 VIVLDLDYEEDSAAEADMNVVMTGNGGLVEIQGLAEDGPFTEDELLELLDLAIKGCNELRELQREAL 229 (230)
T ss_pred ceEecCcchhhcccccCceEEEEecCCeEEEEEEeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998887877 89999999999999999999999999999999999887
No 6
>TIGR01966 RNasePH ribonuclease PH. This bacterial enzyme, ribonuclease PH, performs the final 3'-trimming and modification of tRNA precursors. This model is restricted absolutely to bacteria. Related families outside the model include proteins described as probable exosome complex exonucleases (rRNA processing) and polyribonucleotide nucleotidyltransferases (mRNA degradation). The most divergent member within the family is RNase PH from Deinococcus radiodurans.
Probab=100.00 E-value=3.6e-47 Score=319.44 Aligned_cols=217 Identities=32% Similarity=0.463 Sum_probs=195.9
Q ss_pred CCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC----C
Q 026262 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR----K 85 (241)
Q Consensus 10 R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~----~ 85 (241)
|+|||+++|+|++++++|++++++|||++++|+|+|+|+|+++.+.+. ....+++|.+.|++.+.|+++..+.. .
T Consensus 1 R~DGR~~~e~R~i~i~~G~~~~A~GSa~v~~G~T~Vla~V~~~~~~p~-~~~~~~~g~l~v~~~~~p~a~~~~~~r~~~~ 79 (236)
T TIGR01966 1 RPDGRKPDQLRPVSITRDFLKHAEGSVLIEFGNTKVLCTASVEEKVPP-FLRGSGEGWITAEYGMLPRATQTRNRRESAK 79 (236)
T ss_pred CCCCCCCCCccCeEEEeCCcCCCCceEEEEecCCEEEEEEEccCccCC-cccCCCcEEEEEEEecCCCCCCCCccccccC
Confidence 899999999999999999999999999999999999999997543221 12235789999999999999886521 2
Q ss_pred CCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhC-----------CCCCCCeeE
Q 026262 86 PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRDIVT 154 (241)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~-----------gip~~~~~~ 154 (241)
|+++.++.+++++|+++|+++++++.||++.|+|+++||++|||+++|++||+++||.|+ ++||+++|+
T Consensus 80 g~~~~~~~e~~~~i~r~lr~~i~l~~l~~~~i~I~v~VL~~DG~~~~aai~Aa~aAL~da~~~~~~~~~~~~ip~~~~~~ 159 (236)
T TIGR01966 80 GKQSGRTQEIQRLIGRALRAVVDLEALGERTIWIDCDVIQADGGTRTASITGAFVALADAISKLHKRGILKESPIRDFVA 159 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHhcCHhhcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhhcCcccCCCccCcee
Confidence 455567888999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee---ecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 155 SCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD---AKLPTNTFEDVMQLAIEGCKAVANYIREVL 228 (241)
Q Consensus 155 ~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~---g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l 228 (241)
++|++++++.+|+|||.+||..+.+.++++++ +.++|++++++ +.++++++.++++.|.++++++++.|+++|
T Consensus 160 ~vt~~~~~~~~v~Dpt~~Ee~~~~~~l~l~~~-~~~~i~~i~~~g~~~~~~~~~l~~~i~~a~~~~~~l~~~~~~~l 235 (236)
T TIGR01966 160 AVSVGIVDGEPVLDLDYEEDSAADVDMNVVMT-GSGGFVEVQGTAEEGPFSRDELNKLLDLAKKGIRELIELQKQAL 235 (236)
T ss_pred EEEEEEECCEEEECCChhHHhccCceEEEEEc-CCCCEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999874 57899999984 469999999999999999999999999986
No 7
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional
Probab=100.00 E-value=1.1e-45 Score=316.65 Aligned_cols=222 Identities=22% Similarity=0.313 Sum_probs=197.8
Q ss_pred cCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccC
Q 026262 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (241)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 83 (241)
++++|+|+|||.++|+|++.+++|++++++|||++++|+|+|+|+|+++ +..|....|++|.+.|++++.|+++...
T Consensus 19 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~vl~~V~~~--~~~p~~~~~~~g~i~~~v~~~~~a~~~~- 95 (271)
T PRK04282 19 LLKKGKRIDGRKLDEYRPIEIETGVIKKAEGSALVKLGNTQVLAGVKLE--IGEPFPDTPNEGVLIVNAELLPLASPTF- 95 (271)
T ss_pred HHhcCCCCCCCCCccccCeEEEeCCccCCCcEEEEEECCCEEEEEEEEE--EecCCCCCCCCCEEEEEEEECCCcCccc-
Confidence 3578999999999999999999999999999999999999999999963 3344445678999999999999987654
Q ss_pred CCCCCCchhHHHHHHHHHHHHHh--hccCCC---C---ccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCC-------
Q 026262 84 RKPKGDRRSTEISLVIRQTMEAC--ILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (241)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~~--i~l~~~---p---~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip------- 148 (241)
..+.+++++.+++++|++++++. ++++.+ | .|.|+|+++||++|||++||+++|+++||.|+++|
T Consensus 96 ~~~~~~~~~~~l~~~l~r~l~~~~~~dl~~L~I~~g~~~w~i~Vdv~VL~~dG~~~daa~~Aa~aAL~~~~iP~~~~~~~ 175 (271)
T PRK04282 96 EPGPPDENAIELARVVDRGIRESKAIDLEKLVIEPGKKVWVVFIDVYVLDHDGNLLDASMLAAVAALLNTKVPAVEEGED 175 (271)
T ss_pred cCCCCCHHHHHHHHHHHHHHhccCCccHHHcEEecCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCcEEEcCC
Confidence 34567778889999999999886 444433 4 49999999999999999999999999999999995
Q ss_pred -------------CCCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee--ecCCHHHHHHHHHHH
Q 026262 149 -------------MRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQLA 213 (241)
Q Consensus 149 -------------~~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~l~~~l~~a 213 (241)
|+++|+++|++++++.+|+|||.+||..+.+.++|+++ ..|+++++++. |+++++++.++++.|
T Consensus 176 ~~~~~~~~~~~l~~~~~p~~vt~~~~~~~~v~Dpt~~Ee~~~~~~l~va~~-~~g~i~~l~~~g~~~~~~~~l~~~i~~A 254 (271)
T PRK04282 176 GVVDKLGEDFPLPVNDKPVTVTFAKIGNYLIVDPTLEEESVMDARITITTD-EDGNIVAIQKSGIGSFTEEEVDKAIDIA 254 (271)
T ss_pred ceeccCCCcccCCCCCeeEEEEEEEECCEEEECCCHHHHhhcCceEEEEEC-CCCcEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985 56799999975 469999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 026262 214 IEGCKAVANYIREVLL 229 (241)
Q Consensus 214 ~~~~~~i~~~i~~~l~ 229 (241)
.+.++++++.++++|+
T Consensus 255 ~~~~~~l~~~~~~~l~ 270 (271)
T PRK04282 255 LEKAKELREKLKEALG 270 (271)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999874
No 8
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-43 Score=290.04 Aligned_cols=222 Identities=21% Similarity=0.310 Sum_probs=201.5
Q ss_pred cCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccC
Q 026262 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (241)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 83 (241)
+++.|+|+|||.++|+|++.+++|+++.++|||+|++|+|+|+|+|+. ++.+|+++.|++|.+.+++...|++....
T Consensus 18 ll~~g~R~DGR~~~efR~ieI~~~vi~ka~GSa~VklG~Tqvv~gvK~--eig~Pf~DtP~eG~~~~n~El~Plas~~f- 94 (272)
T COG2123 18 LLKKGIRIDGRSFDEFRPLEIETGVIPKANGSALVKLGNTQVVVGVKA--EIGEPFPDTPNEGVLVVNVELSPLASPSF- 94 (272)
T ss_pred HhccCcccCCCCcccccceEEEeCceecCCCcEEEEecCeEEEEEEEc--ccCCCCCCCCCCceEEeeeeeeccccccc-
Confidence 356899999999999999999999999999999999999999999998 67889999999999999999888887654
Q ss_pred CCCCCCchhHHHHHHHHHHHHHh--hccCCC---C---ccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCC-------
Q 026262 84 RKPKGDRRSTEISLVIRQTMEAC--ILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (241)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~~--i~l~~~---p---~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip------- 148 (241)
..|+++....++++.++|.++.+ ++++++ + .|.+.+++++|++|||++||++.|+++||+++++|
T Consensus 95 E~Gppde~aielsrvvdr~lr~s~aiDlekL~I~~g~kvwvv~vDv~vld~DGnl~Da~~lA~~aAL~~t~vP~~~~~~~ 174 (272)
T COG2123 95 EPGPPDELAIELSRVVDRGLRESKAIDLEKLCIEEGKKVWVVFVDVHVLDYDGNLIDAASLAAVAALLNTRVPKAVEVGD 174 (272)
T ss_pred cCCCCchhHHHHHHHHHHHHHhccCcchhheeEecCCEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCceeecCC
Confidence 34677888889999999999874 555554 2 49999999999999999999999999999999988
Q ss_pred ---------------CCCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee--ecCCHHHHHHHHH
Q 026262 149 ---------------MRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQ 211 (241)
Q Consensus 149 ---------------~~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~l~~~l~ 211 (241)
+.+.|+++|++++++.+++|||.+||..+++.++|.+ ++.++|+.+++. |.++++.+.+|++
T Consensus 175 ~~~v~~~~~~~~pl~~~~~pi~vt~a~ig~~lvvDPsleEe~v~d~~ltit~-~~~~~Iv~iqK~g~~~~~~~~~~~~~~ 253 (272)
T COG2123 175 GEIVIEVEEEPVPLPVSNPPISVTFAKIGNVLVVDPSLEEELVADGRLTITV-NEDGEIVAIQKVGGGSITESDLEKALK 253 (272)
T ss_pred cceeecccCCCcccccCCCceEEEEEEECCEEEeCCCcchhhhcCceEEEEE-CCCCcEEEEEEcCCCcCCHHHHHHHHH
Confidence 4788999999999999999999999999999999987 688999999985 4699999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026262 212 LAIEGCKAVANYIREVLL 229 (241)
Q Consensus 212 ~a~~~~~~i~~~i~~~l~ 229 (241)
.|.+.+.++...+.+.|+
T Consensus 254 ~A~~~~~kl~~~~~~~L~ 271 (272)
T COG2123 254 TALSKAEKLREALKEALK 271 (272)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988875
No 9
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=100.00 E-value=8.7e-43 Score=329.61 Aligned_cols=230 Identities=25% Similarity=0.391 Sum_probs=206.5
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCcccccccc--CCCCceEEEEEEeecCCc
Q 026262 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~~p~e~~~~~~--~~~~~~~i~v~~~~~~~~ 78 (241)
+|++++|.|+|||.++|+|++++++|+++++||||+|+.|+|+|+|+| .||.+..++.+ ...+.+.+.++|+++||+
T Consensus 303 ~~il~~g~R~DGR~~~e~Rpi~~~~g~l~~a~GSa~~~~G~Tqvl~~vt~g~~~~~~~~~~~~~~~~~~~~~~y~~~pfs 382 (684)
T TIGR03591 303 ERILKEGKRIDGRDLDTIRPISIEVGVLPRTHGSALFTRGETQALVVTTLGTERDEQIIDDLEGEYRKRFMLHYNFPPYS 382 (684)
T ss_pred HHHhcCCCCCCCCCCCCcCceEEEeCCCCCCCceEEEEeCCeEEEEEEecCCcccccCCcccCCCccEEEEEEEEcCCCC
Confidence 588999999999999999999999999999999999999999999999 58865543322 124579999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhcc-CCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEE
Q 026262 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l-~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs 157 (241)
++++++.+.+++++.+++++++++|++++++ +.|| |+|+|+++||++|||.++|+++|+++||+|+||||++.+++++
T Consensus 383 ~~e~~~~g~~~rrei~~~~l~~ral~~~i~~~~~~p-~tI~v~~~VLesdGs~~~Aai~aaslAL~dAgvP~~~~Vagvs 461 (684)
T TIGR03591 383 VGEVGRVGGPGRREIGHGALAERALKAVLPSEEEFP-YTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIA 461 (684)
T ss_pred CCCcCCCCCCChHHHHHHHHHHHHHHHhcCccccCC-eEEEEEEEEEeCCCChHHHHHHHHHHHHHhcCCCCcCCEEEEE
Confidence 9998777778899999999999999999986 7899 5799999999999999999999999999999999999999999
Q ss_pred EeeeC-C----eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 158 AGYLN-S----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLL 229 (241)
Q Consensus 158 ~~~~~-~----~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~l~~~l~~a~~~~~~i~~~i~~~l~ 229 (241)
+|+++ + .+++||+..|+..++..++|+. +.. .|++++++++ ++.+.+.++++.|.+++.+|++.|++++.
T Consensus 462 ~gli~~~~~~~~il~D~~~~Ed~~~d~d~~va~-t~~-gI~~lq~d~k~~~i~~~~l~~al~~a~~~~~~I~~~m~~~l~ 539 (684)
T TIGR03591 462 MGLIKEGDERFAVLSDILGDEDHLGDMDFKVAG-TRD-GITALQMDIKIDGITREIMEQALEQAKEGRLHILGEMNKVIS 539 (684)
T ss_pred EEEEcCCCcceEEEeCCChHHHhcCCceEEEEE-cCC-ceEEEEEEcCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99994 2 4899999999999999999975 344 4999999754 69999999999999999999999999999
Q ss_pred HHHHH
Q 026262 230 ENTKQ 234 (241)
Q Consensus 230 ~~~~~ 234 (241)
++.++
T Consensus 540 ~~~~~ 544 (684)
T TIGR03591 540 EPRAE 544 (684)
T ss_pred hhhcc
Confidence 98653
No 10
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=100.00 E-value=3e-42 Score=326.67 Aligned_cols=230 Identities=25% Similarity=0.411 Sum_probs=204.4
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCcccccccc--CCCCceEEEEEEeecCCc
Q 026262 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~~p~e~~~~~~--~~~~~~~i~v~~~~~~~~ 78 (241)
+||+++|.|+|||.++|+|++++++|+++++||||+|+.|+|+|+|+| .||....++.. ...+.+.+.++|+++||+
T Consensus 307 ~~il~~g~R~DGR~~~e~Rpi~~~~g~l~~a~GSal~~~G~T~Vl~~vt~g~~~~~~~~~~~~~~~~~~~~~~y~~~pfs 386 (693)
T PRK11824 307 RRILEEGIRIDGRKLDEIRPISIEVGVLPRTHGSALFTRGETQALVVATLGTLRDEQIIDGLEGEYKKRFMLHYNFPPYS 386 (693)
T ss_pred HHHhcCCCCCCCCCcCcccceEEEeCCCCCCCceEEEEECCeEEEEEEecCCCcccccccccCCCCcEEEEEEEEcCCCC
Confidence 589999999999999999999999999999999999999999999999 47743222211 123679999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhcc-CCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEE
Q 026262 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l-~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs 157 (241)
++++++.+.+++++.+++++++++|++++++ +.|| |+|+|+++||++|||.++|+++|+++||+|+||||++++++++
T Consensus 387 ~~e~~~~~~~~rre~~~~~li~ral~~vi~~~~~~p-~~I~v~~~VLe~dGs~~~Aai~aaslAL~dAgvP~~~~Va~vs 465 (693)
T PRK11824 387 VGETGRVGSPGRREIGHGALAERALEPVLPSEEEFP-YTIRVVSEILESNGSSSMASVCGSSLALMDAGVPIKAPVAGIA 465 (693)
T ss_pred CCCcCCCCCCChhHHHHHHHHHHHHHHhcCcccCCC-EEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceeEEE
Confidence 9988777778899999999999999999998 6888 5999999999999999999999999999999999999999999
Q ss_pred EeeeC-C---eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 158 AGYLN-S---TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLLE 230 (241)
Q Consensus 158 ~~~~~-~---~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~ 230 (241)
+|+++ + .+++||+..|+..++..++|+. +..+ |++++++++ ++.+.+.++++.|.+++.+|++.|.+++.+
T Consensus 466 ~gli~~~~~~~il~D~~~~Ed~~~d~d~~va~-t~~g-i~~lq~d~k~~~i~~~~l~~al~~a~~g~~~I~~~M~~aI~~ 543 (693)
T PRK11824 466 MGLIKEGDKYAVLTDILGDEDHLGDMDFKVAG-TRDG-ITALQMDIKIDGITREILEEALEQAKEGRLHILGKMNEAISE 543 (693)
T ss_pred EEEEcCCCceEEEcCCChhhHhhCCceEEEEe-cCCc-eEEEEEecccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99994 3 3889999999999999999975 3444 999998754 699999999999999999999999999976
Q ss_pred HHHH
Q 026262 231 NTKQ 234 (241)
Q Consensus 231 ~~~~ 234 (241)
..+.
T Consensus 544 ~r~~ 547 (693)
T PRK11824 544 PRAE 547 (693)
T ss_pred Chhh
Confidence 6543
No 11
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-41 Score=267.60 Aligned_cols=208 Identities=27% Similarity=0.435 Sum_probs=187.4
Q ss_pred CCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCCCCCCCchhHHHHH
Q 026262 18 EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISL 97 (241)
Q Consensus 18 e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (241)
++|++.++.|+++++|||+.|++|+|+|+|+|+||.+++.+. +.+++..++|.++... |.++..++.+++
T Consensus 4 ~lr~~~cei~iLsr~dGSs~fsqgdT~V~c~V~GP~dvk~r~-E~~~katleVi~rp~~---------G~~~~~eK~~e~ 73 (217)
T KOG1069|consen 4 RLRGIACEISILSRPDGSSEFSQGDTKVICSVYGPIDVKARQ-EDPEKATLEVIWRPKS---------GVNGTVEKVLER 73 (217)
T ss_pred hhhhhhhhhceecCCCCccceecCCcEEEEEeeCCcchhhcc-cCchhceEEEEEeccc---------CcchHHHHHHHH
Confidence 789999999999999999999999999999999999987654 5688899999997432 344567889999
Q ss_pred HHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCC-eeEEeCCcccccc
Q 026262 98 VIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNS-TPLLDLNYVEDSA 176 (241)
Q Consensus 98 ~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~-~~i~DPt~~Ee~~ 176 (241)
.|++++++.|.++.||+..|+|.+||+++||+.+++|+|||++||.|+||||+++++++++++.++ .+++|||..+++.
T Consensus 74 iI~~tl~~~I~l~l~Prt~iqVsiqvv~ddgs~LacaINaAclALvDaGIpl~~mfcai~~~~~~d~~lv~Dpt~~qek~ 153 (217)
T KOG1069|consen 74 IIRKTLSKAIILELYPRTTIQVSIQVVEDDGSTLACAINAACLALVDAGIPLRSMFCAISCALHEDGVLVLDPTAKQEKI 153 (217)
T ss_pred HHHHHHHHhheeeecCCceEEEEEEEEecCCcchHHHHHHHHHHHHhcCCchHHhhhhceEEEecCccEEECCcHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999854 8999999999997
Q ss_pred CCCcEEEEEc---CCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 177 GGPDVTVGIL---PTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 177 ~~~~~~v~~~---~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
+.+..++++. ....+++.++..|.++.+++..+++.|+..++++++++++.|++..++.
T Consensus 154 ~~~~~~lsf~~~~~~~~~vi~s~t~G~~~~d~lf~~le~a~~~~~~~f~f~r~~~q~~~s~~ 215 (217)
T KOG1069|consen 154 STARATLSFEGGSLGEPKVIISETNGEKSEDQLFYVLELAQAAAQSLFPFYREVLQRKYSKS 215 (217)
T ss_pred hhceEEEEEecCCCCCcceEEEeccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcCcc
Confidence 7777666652 2356888889999999999999999999999999999999999887654
No 12
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=100.00 E-value=1.2e-40 Score=310.47 Aligned_cols=228 Identities=26% Similarity=0.398 Sum_probs=203.7
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEc-Ccccccccc--CCCCceEEEEEEeecCC
Q 026262 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG-PREVQNKSQ--QMSDQALVRCEYSMANF 77 (241)
Q Consensus 1 ~~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~-p~e~~~~~~--~~~~~~~i~v~~~~~~~ 77 (241)
+|+++++|.|+|||.++++|++++++|+++++||||+++.|+|+|+|.++. |.+..+..+ ..++.+.+.|+|+++||
T Consensus 327 r~~il~~g~R~DGR~~~eiR~i~~~~g~l~~a~GSa~~~~G~Tqvl~~~tlG~~~~~q~~~~l~~~~~~~~~~~YnfpPF 406 (719)
T TIGR02696 327 RERVLTEGVRIDGRGVTDIRPLDAEVQVIPRVHGSALFERGETQILGVTTLNMLKMEQQIDSLSPETSKRYMHHYNFPPY 406 (719)
T ss_pred HHHHhcCCCCCCCCCccccccceeecCCCCCCCceEEEEecCcEEEEEEeCCCchhhhhcccccccccceEEEEEeCCCC
Confidence 378999999999999999999999999999999999999999999998863 332222111 12457888999999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhc-cCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEE
Q 026262 78 STGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSC 156 (241)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~v 156 (241)
+++++++.+.+++++.+++++++++|++++. ++.||++ |.+.++||++||+...|++||+++||+||||||+++++++
T Consensus 407 St~er~~~~~~~RReighg~La~rALe~vI~~~e~fP~T-IrvvseVLeSdGSss~AsIcaasLALmDAGVPmkd~VAgi 485 (719)
T TIGR02696 407 STGETGRVGSPKRREIGHGALAERALVPVLPSREEFPYA-IRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGI 485 (719)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHhhCcHhhCCCE-EEEEEEeeccCCcHHHHHHHHHHHHHHHcCcchhheeeEE
Confidence 9999888777888999999999999999997 6999996 8899999999999999999999999999999999999999
Q ss_pred EEeeeCC----e----eEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecC---CHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 157 SAGYLNS----T----PLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKL---PTNTFEDVMQLAIEGCKAVANYIR 225 (241)
Q Consensus 157 s~~~~~~----~----~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~---~~~~l~~~l~~a~~~~~~i~~~i~ 225 (241)
++|++++ . +++||+..|+...+..+.++ ++.+.|++++++|++ +.+.+.+++++|.+++.+|++.|+
T Consensus 486 s~Gli~e~~~~~~~~~iL~Di~g~ED~~Gdmdfkva--gt~~gIt~lQmd~ki~gi~~e~l~~aL~~A~~g~~~Il~~m~ 563 (719)
T TIGR02696 486 AMGLISDEVDGETRYVALTDILGAEDAFGDMDFKVA--GTSEFVTALQLDTKLDGIPASVLASALKQARDARLAILDVMA 563 (719)
T ss_pred EEEEeccccCCCcceeEEeCCCchhhhcCCceEEEE--ecCCCEEEEEEEeeECCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999933 2 89999999999988888875 567899999999875 889999999999999999999999
Q ss_pred HHHHHH
Q 026262 226 EVLLEN 231 (241)
Q Consensus 226 ~~l~~~ 231 (241)
++|...
T Consensus 564 ~al~~p 569 (719)
T TIGR02696 564 EAIDTP 569 (719)
T ss_pred HHHhCc
Confidence 999877
No 13
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=100.00 E-value=2.7e-39 Score=307.05 Aligned_cols=230 Identities=25% Similarity=0.396 Sum_probs=204.7
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEE-cCccccccccC---CCCceEEEEEEeecCC
Q 026262 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQ---MSDQALVRCEYSMANF 77 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-~p~e~~~~~~~---~~~~~~i~v~~~~~~~ 77 (241)
+||+.+|.|+|||.++|.|++.+++|.++++||||+|++|+|+|+|+|+ ||.+..++.+. .+....+.++|+++|+
T Consensus 431 ~~i~~~g~R~DGR~~~eiRpI~~e~G~Lp~A~GSAlf~~G~TqVLatVtlGp~~~~q~~d~l~~~~~~~~f~~~y~fPPf 510 (891)
T PLN00207 431 RRIVEGGKRSDGRTPDEIRPINSSCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDNLVDADEVKRFYLQYSFPPS 510 (891)
T ss_pred HHHhcCCCCCCCCCcCccceEEEEeCCcCCCCceEEEEECCeEEEEEEEecCccccccccccccccceeeEEEEEEcCCC
Confidence 5789999999999999999999999999999999999999999999996 88765443222 1346788899999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhccC-CCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEE
Q 026262 78 STGDRMRKPKGDRRSTEISLVIRQTMEACILTH-LMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSC 156 (241)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~-~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~v 156 (241)
+++++++.+.+++++.+++++++++|++++..+ .|| |+|+|+++||++||+..+|++||+++||+|+||||++.++++
T Consensus 511 s~ge~~r~g~psrREi~hg~L~eRALrpvip~~~~fP-~tIrV~~~VLesDGSssmAaV~aaSLALmDAGIPmk~~VAGv 589 (891)
T PLN00207 511 CVGEVGRIGAPSRREIGHGMLAERALEPILPSEDDFP-YTIRVESTITESNGSSSMASVCGGCLALQDAGVPVKCPIAGI 589 (891)
T ss_pred CCccccCCCCCCHHHHHHHHHHHHHHHHhCCcccCCC-EEEEEEEEEEeCCCChHHHHHHHHHHHHHhcCCCccCceeEE
Confidence 998877777788899999999999999999985 899 599999999999999999999999999999999999999999
Q ss_pred EEeee-C-------Ce--eEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeec---CCHHHHHHHHHHHHHHHHHHHHH
Q 026262 157 SAGYL-N-------ST--PLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANY 223 (241)
Q Consensus 157 s~~~~-~-------~~--~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~l~~~l~~a~~~~~~i~~~ 223 (241)
++|++ + +. +++||+..|+..++..|.|+ ++.+.|++++++++ ++.+.+.++++.|.+++.+|.+.
T Consensus 590 svGli~d~~~~~~~g~~~IL~Dp~g~Ed~~gdmDfkVA--gT~~gIt~iqmd~k~~gis~e~l~eAL~~A~~g~~~Il~~ 667 (891)
T PLN00207 590 AMGMVLDTEEFGGDGSPLILSDITGSEDASGDMDFKVA--GNEDGITAFQMDIKVGGITLPIMERALLQAKDGRKHILAE 667 (891)
T ss_pred EEEEEecccccCCCCcEEEEeCCCHHHHhcCCceEEEE--ecccceEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 3 23 55799999999999888887 46679999999764 58999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 026262 224 IREVLLENTKQ 234 (241)
Q Consensus 224 i~~~l~~~~~~ 234 (241)
|++++.+...+
T Consensus 668 M~~~i~~pr~~ 678 (891)
T PLN00207 668 MSKCSPPPSKR 678 (891)
T ss_pred HHHHHhhhhhh
Confidence 99999877653
No 14
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-39 Score=260.97 Aligned_cols=229 Identities=23% Similarity=0.295 Sum_probs=202.1
Q ss_pred cCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccC
Q 026262 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (241)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 83 (241)
.++.|.|.|||++.|+|.+.+++| .-.||+.+++|+|+|+|.|+. ++.+|+.+.|.+|.+++...+.|++...-.
T Consensus 17 alk~g~R~DgR~l~efR~lei~fG---ke~gs~~vt~G~Tkvm~~vt~--~ia~Py~dRP~eG~~~I~telsPmA~~sfE 91 (291)
T KOG1614|consen 17 ALKAGLRFDGRSLEEFRDLEIEFG---KEYGSVLVTMGNTKVMARVTA--QIAQPYIDRPHEGSFSIFTELSPMASPSFE 91 (291)
T ss_pred HHHhcccccccchhhhhceEEEec---cccccEEEEecCeeEEEEeeh--hhcCcccCCCCCCeeeeeeccccccccccC
Confidence 467899999999999999999999 578999999999999999998 678899999999999998888888866432
Q ss_pred CCCCCCchhHHHHHHHHHHHHH--hhccCCCC------ccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCC-------
Q 026262 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLMP------RSQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (241)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~l~~~p------~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip------- 148 (241)
.|..+..+.++.++|+++++. ++++|.+. .|.|++++++|+.|||++||+..|+.+||++.+-|
T Consensus 92 -~Gr~~~~~v~l~Rliek~~R~S~aiD~EsLCI~aG~kvW~IRiDlhiLd~DGnlvDaA~iAviaaL~hFrrPdvTv~g~ 170 (291)
T KOG1614|consen 92 -PGRKGESEVELSRLIEKALRRSKAIDTESLCIRAGEKVWLIRIDLHILDHDGNLVDAACIAVIAALMHFRRPDVTVGGE 170 (291)
T ss_pred -CCCccchHHHHHHHHHHHHHhccccchHHHHhhhCCeEEEEEEEEEEEcCCCCeehhHHHHHHHHHHhcCCCCcccccc
Confidence 345567788999999999987 45556442 49999999999999999999999999999999943
Q ss_pred ----------------CCCeeEEEEEeeeC--CeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeec--CCHHHHHH
Q 026262 149 ----------------MRDIVTSCSAGYLN--STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK--LPTNTFED 208 (241)
Q Consensus 149 ----------------~~~~~~~vs~~~~~--~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~--~~~~~l~~ 208 (241)
++|+|+|+||++++ +..|+|||..||...++.++|++ ++++++|.+++.|. ++..++..
T Consensus 171 ev~ihp~eEr~PvPL~I~HmPIC~tf~ffnkG~ivviDpt~~Ee~~~dGs~vVt~-Nk~rEVc~i~k~G~~~~~~~~i~~ 249 (291)
T KOG1614|consen 171 EVIIHPVEEREPVPLSIHHMPICFTFGFFNKGEIVVIDPTEKEEAVMDGSMVVTM-NKNREVCAIQKSGGEILDESVIER 249 (291)
T ss_pred eeEecChhccCCcceeeeeccceEEEEEecCceEEEeCCcHHHHhccCceEEEEE-cCCccEEEEecCCCccccHHHHHH
Confidence 69999999999996 46789999999999999999975 68899999998653 68999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026262 209 VMQLAIEGCKAVANYIREVLLENTKQLECRR 239 (241)
Q Consensus 209 ~l~~a~~~~~~i~~~i~~~l~~~~~~~~~~~ 239 (241)
|...|...+.++...+.+.|+++..++-+++
T Consensus 250 C~k~A~~~a~~vt~ii~e~l~~d~~~r~~~~ 280 (291)
T KOG1614|consen 250 CYKLAKDRAVEVTGIILEALEEDQRERSAQK 280 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999988876654
No 15
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=100.00 E-value=1.6e-32 Score=259.90 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=179.6
Q ss_pred cceEEEeCCC-CCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccc-----cCCCCCCCchhH
Q 026262 20 RQLRAEIGNV-AKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRRST 93 (241)
Q Consensus 20 R~i~i~~~~l-~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~-----~~~~~~~~~~~~ 93 (241)
|++.+++|.+ ++|+|||++++|+|+|+|+|++|.+.+ +..+...++|+|...+++.+. .++.|+|++++.
T Consensus 5 R~i~ie~G~la~~AdGSa~v~~G~T~VlatV~~~~~~~----~~~df~pL~vey~e~~~A~gkipg~f~kReg~p~~~ei 80 (684)
T TIGR03591 5 RTLTLETGKIARQADGAVVVRYGDTVVLVTVVAAKEAK----EGQDFFPLTVNYQEKFYAAGKIPGGFFKREGRPSEKET 80 (684)
T ss_pred ccEEEEECCcCCCCCeEEEEEECCeEEEEEEEcCCCCC----CCCceEeEEEEEEehhhhccCCCCCcccCCCCCCHHHH
Confidence 8999999999 579999999999999999999987542 224678999999977765542 233467889999
Q ss_pred HHHHHHHHHHHHhhccCCCCc---cEEEEEEEEEeCCCchH-h-HHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEe
Q 026262 94 EISLVIRQTMEACILTHLMPR---SQIDIFVQVLQADGGTR-S-ACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLD 168 (241)
Q Consensus 94 ~l~~~l~~~l~~~i~l~~~p~---~~i~i~v~il~~dG~~l-~-a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~D 168 (241)
+++++|++.++++ ||+ |.|+|+++||++||+.. + +++||+++||.+++||++++++++++|+++|.+++|
T Consensus 81 l~srlIdR~lrpl-----fp~~~~~~i~V~~~VLs~Dg~~~~d~aai~aAsaAL~~s~IP~~~~v~av~vg~idg~~ild 155 (684)
T TIGR03591 81 LTSRLIDRPIRPL-----FPKGFRNEVQVVATVLSYDPENDPDILAIIGASAALAISGIPFNGPIAAVRVGYIDGQYVLN 155 (684)
T ss_pred HHHHHHhhHHHHh-----cCCCCCceEEEEEEEEecCcCCchHHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEEc
Confidence 9999999999886 565 89999999999999975 4 999999999999999999999999999999999999
Q ss_pred CCccccccCCCcEEEEEcCCCCcEEEEEeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 169 LNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 169 Pt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
||.+|+..++..++|+ .+.+.+++++.++. ++.+++.++++.|.++++++.+++++.++++.+.
T Consensus 156 Pt~~E~~~s~~~l~va--~t~~~i~mie~~~~~i~e~~l~~al~~a~~~~~~i~~~~~~~~~~~~~~ 220 (684)
T TIGR03591 156 PTVDELEKSDLDLVVA--GTKDAVLMVESEAKELSEEVMLGAIEFGHEEIQPVIEAIEELAEEAGKE 220 (684)
T ss_pred CCHHHHhhCCceEEEE--ccCCcEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999888886 45578999998765 9999999999999999999999999999888754
No 16
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-31 Score=217.65 Aligned_cols=222 Identities=17% Similarity=0.225 Sum_probs=181.7
Q ss_pred CCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCC-eEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC
Q 026262 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGN-TKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (241)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~-T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 84 (241)
+..+|+|||.++|+|++.+++|+++++||||+|++|+ |.|+++|+. |+..|+.+.|+++.+.+.+++.|-++++-.
T Consensus 18 e~~iR~DGR~~~~~Rpi~vetdVlp~tNGSaRVk~g~~tdiivgVKa--Evg~~~~~~p~egk~~~~VD~S~sasp~f~- 94 (288)
T KOG1612|consen 18 EPDIRNDGRSCHQFRPIEVETDVLPGTNGSARVKLGDGTDIIVGVKA--EVGSPDDETPVEGKYLFFVDCSPSASPQFQ- 94 (288)
T ss_pred CcccccCCcCccccceEEEEeccccCCCCcEEEEecCCceEEEEEee--eccCccccCCCCCeEEEEEEecCCcCcccc-
Confidence 4679999999999999999999999999999999998 899999998 666677777888888777777776654322
Q ss_pred CCCC-CchhHHHHHHHHHHHHH---hhccCC---CC--ccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCC-------
Q 026262 85 KPKG-DRRSTEISLVIRQTMEA---CILTHL---MP--RSQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (241)
Q Consensus 85 ~~~~-~~~~~~l~~~l~~~l~~---~i~l~~---~p--~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip------- 148 (241)
|+. +....++...++++|.+ .+++.. -| +|.|+|++.+++.|||++||+..|+.+||-++.+|
T Consensus 95 -gRggde~~~eltsaLq~~l~~~~sgv~ls~L~lt~~~~W~i~VDvlVi~s~gn~~dAiS~Ai~~AL~~T~lPkv~v~~d 173 (288)
T KOG1612|consen 95 -GRGGDELVEELTSALQRVLNSLGSGVDLSKLQLTPGYCWKIYVDVLVISSDGNLLDAISIAIYAALNNTRLPKVIVAFD 173 (288)
T ss_pred -CCChhhHHHHHHHHHHHHHhCcCcccchhheeccCCeeEEEEEeEEEEecCCCHHHHHHHHHHHHHhcccCCccccccc
Confidence 222 23344677777777766 133332 23 59999999999999999999999999999999988
Q ss_pred --------------------CCCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee--ecCCHHHH
Q 026262 149 --------------------MRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTF 206 (241)
Q Consensus 149 --------------------~~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~l 206 (241)
...+|+-++++.++..+++|||.+||.++...+.|++ ...|-+..++.- |.+.++-+
T Consensus 174 d~~~~~i~~s~~~Yd~~~~~~~~~P~ivtlskIG~~~lVD~T~eEe~~a~s~l~Isv-~a~givs~~r~VG~G~l~~s~i 252 (288)
T KOG1612|consen 174 DDGEVEILLSDEEYDLMVKLVENVPLIVTLSKIGTNMLVDPTAEEESVANSGLLISV-SAGGIVSCTRSVGLGDLDPSSI 252 (288)
T ss_pred cCCceeeccCcccchhhhhhcccCCEEEEEEeecceEEccCCccHHHhhhcceEEEE-ecCcceEEEEEecCCCCChhhH
Confidence 2456889999999999999999999999999999998 455655555553 45889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 207 EDVMQLAIEGCKAVANYIREVLLENT 232 (241)
Q Consensus 207 ~~~l~~a~~~~~~i~~~i~~~l~~~~ 232 (241)
.++++++.+-...++..+.+.|.+..
T Consensus 253 ~~mle~~~~~~e~l~~~l~k~L~~~e 278 (288)
T KOG1612|consen 253 PEMLEQGKAVVETLAPDLVKSLENEE 278 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhh
Confidence 99999999999999988888887643
No 17
>KOG1613 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-33 Score=223.41 Aligned_cols=217 Identities=21% Similarity=0.282 Sum_probs=179.2
Q ss_pred cCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccC
Q 026262 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (241)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 83 (241)
.+.+++|+|||...|+|.+.++.|.++.+|||+.++.|+|.|+|++++ |+..|..+.|++|.+..+|.++|.++. +.
T Consensus 31 hLse~~RpdgR~lgefRdt~in~g~IsTangSal~K~G~ttvi~~Ik~--ei~epstdapdeg~Iv~n~~lpplcs~-r~ 107 (298)
T KOG1613|consen 31 HLSEGIRPDGRKLGEFRDTAINAGNISTANGSALLKSGKTTVICGIKA--EIAEPSTDAPDEGDIVPNYALPPLCSS-RF 107 (298)
T ss_pred HhhcccCcchhhhhHHhhhheecCceeccCcHHHHhcCCcEEEEEeee--eecccccCCCCCcceeecccCCccccc-CC
Confidence 467899999999999999999999999999999999999999999999 777888888999999999999898875 44
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhc--cCC---C---CccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCC------
Q 026262 84 RKPKGDRRSTEISLVIRQTMEACIL--THL---M---PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPM------ 149 (241)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~~i~--l~~---~---p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~------ 149 (241)
++|+|++.++-++..|..++.++-. ++. + ..|.++.++.+|+.||+++|+|++|.++||.+..+|.
T Consensus 108 RpG~p~dea~viSq~LhdtIl~S~ii~~k~Lci~~gKaawvlYadIicLd~dG~~fDa~w~al~aAlknvklP~a~ide~ 187 (298)
T KOG1613|consen 108 RPGPPTDEAQVISQKLHDTILHSRIIPKKALCIKAGKAAWVLYADIICLDYDGPVFDACWNALMAALKNVKLPRAFIDER 187 (298)
T ss_pred CCCCCchHHHHHHHHHHHHHHhcCCcchhhheeeccceeeEEEEEEEEEcCCCcHHHHHHHHHHHHHhcCCCceeeeccc
Confidence 5678888888999999888876533 332 2 3499999999999999999999999999999999982
Q ss_pred -------------------------CCeeE-----EEEEe-eeCCee-EEeCCccccccCCCcEEEEEcCCCCcEEEEEe
Q 026262 150 -------------------------RDIVT-----SCSAG-YLNSTP-LLDLNYVEDSAGGPDVTVGILPTLDKVTLLQM 197 (241)
Q Consensus 150 -------------------------~~~~~-----~vs~~-~~~~~~-i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~ 197 (241)
...++ ..|.. ++++.+ +.|||.+||....+.+||.. .+.|+++.+.+
T Consensus 188 ~~~~~~t~e~~ic~~tlt~p~~ln~e~r~~~~~n~~fS~~~vl~~~li~adpT~eEE~l~~~~lTIvl-dss~n~v~l~k 266 (298)
T KOG1613|consen 188 ASDLRMTIEEIICDQTLTVPLMLNAENRAFASQNSDFSEEEVLDDVLIAADPTEEEETLITSTLTIVL-DSSGNYVQLTK 266 (298)
T ss_pred chhhhhhHHHHHHhhhhcchhhhccccccccccCCCccHHHhhcceeEecCCCchhhhhhhceEEEEE-cCCCCEEEEEe
Confidence 11111 11222 344444 59999999999999999966 46677777765
Q ss_pred -ee--cCCHHHHHHHHHHHHHHHHHHHHHH
Q 026262 198 -DA--KLPTNTFEDVMQLAIEGCKAVANYI 224 (241)
Q Consensus 198 -~g--~~~~~~l~~~l~~a~~~~~~i~~~i 224 (241)
+| ...++.++.|+++|+.+++++.+.+
T Consensus 267 ~GG~al~~~~~iK~c~elar~Rakelk~~~ 296 (298)
T KOG1613|consen 267 VGGGALITPEMIKRCLELARVRAKELKTRF 296 (298)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 2567999999999999999988765
No 18
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=100.00 E-value=2.2e-31 Score=252.75 Aligned_cols=206 Identities=21% Similarity=0.320 Sum_probs=179.1
Q ss_pred CcceEEEeCCCC-CCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccc-----cCCCCCCCchh
Q 026262 19 MRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRRS 92 (241)
Q Consensus 19 ~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~-----~~~~~~~~~~~ 92 (241)
-|++.+++|.+. +|+|||++++|+|+|+|+|++|.+.+ +..+...++|+|...+++.+. .++.|+|++++
T Consensus 13 ~r~i~~e~G~ia~qAdGSa~v~~G~T~VlatV~~~~~~~----~~~df~pL~v~y~e~~~A~gkiP~~f~kreg~pse~e 88 (693)
T PRK11824 13 GRTLTLETGKLARQANGAVLVRYGDTVVLVTVVASKEPK----EGQDFFPLTVDYEEKTYAAGKIPGGFFKREGRPSEKE 88 (693)
T ss_pred CccEEEEECCcCCCCCeEEEEEECCeEEEEEEEcCCCCC----CCCCeeeeEEEEEehhhhccCCCcccccCCCCCChHH
Confidence 379999999995 69999999999999999999987632 235678899999987776442 22346788899
Q ss_pred HHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCch-Hh-HHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeCC
Q 026262 93 TEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT-RS-ACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLN 170 (241)
Q Consensus 93 ~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~-l~-a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DPt 170 (241)
..++++|++.++++.. ..++|.++|+++||++||+. .+ +++||+++||.+++||+++.++++++|+++|.+|+|||
T Consensus 89 il~srlIdR~lrplfp--~~~~~~i~I~~~VL~~Dg~~~~d~aai~aAsaAL~~s~IP~~~~v~av~vg~i~g~~ivdPt 166 (693)
T PRK11824 89 TLTSRLIDRPIRPLFP--KGFRNEVQVVATVLSVDPENDPDILAMIGASAALSISGIPFNGPIAAVRVGYIDGEFVLNPT 166 (693)
T ss_pred HHHHHHHhhhHHHhCC--CCCCeEEEEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEEcCC
Confidence 9999999999999642 23479999999999999976 45 89999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEEcCCCCcEEEEEeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVLLENT 232 (241)
Q Consensus 171 ~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g-~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~ 232 (241)
.+|+..++..++|+. +.+.+++++.+| .++.+++.++++.|.++++++.+.+++.++++.
T Consensus 167 ~~E~~~s~~~l~va~--t~~~i~mie~~~~~l~e~~l~~al~~a~~~~~~i~~~~~~~~~~~~ 227 (693)
T PRK11824 167 VEELEESDLDLVVAG--TKDAVLMVESEAKELSEEVMLEAIEFGHEAIQELIDAQEELAAEAG 227 (693)
T ss_pred HHHHhhCcceEEEEE--ccCceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998875 345899999876 499999999999999999999999999998776
No 19
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 1, which has a core 2-layer alpha/beta structure with a left-handed crossover, similar to that found in ribosomal protein S5. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; PDB: 2C38_G 2BR2_O 2C37_M 3L7Z_A 2JEB_A 2C39_A 2JEA_A 2JE6_A 3U1K_A 4AM3_B ....
Probab=99.97 E-value=5e-30 Score=196.99 Aligned_cols=130 Identities=39% Similarity=0.542 Sum_probs=116.4
Q ss_pred CCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCC-CceEEEEEEeecCCcccccCCCCCCCchhHHHH
Q 026262 18 EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMS-DQALVRCEYSMANFSTGDRMRKPKGDRRSTEIS 96 (241)
Q Consensus 18 e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (241)
|+|++.+++|++++++|||+|++|+|+|+|+|++|.+.+ |....+ ..|.+.+++++.|++....+..+.++..+.+++
T Consensus 1 e~R~i~i~~~~~~~a~GSa~v~~G~T~V~~~V~~~~~~~-~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~l~ 79 (132)
T PF01138_consen 1 ELRPISIETGVLPRADGSARVSLGNTKVICSVKGPIEPP-PSNERDDAEGRLTVEVEFSPFASPSFRRGGRPDEEERELS 79 (132)
T ss_dssp CBEEEEEEESSSSSSSEEEEEEETTEEEEEEEEEEEEGC-SCSTTSSSSEEEEEEEEECCCGSTSSSSSSSTHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCeEEEEEECCeEEEEEEEeccccc-chhcccCCCceEEEEEEeccccccccccccccchhHHHHH
Confidence 799999999999999999999999999999999987662 333322 358999999999998877655456778888999
Q ss_pred HHHHHHHHHhhccCCCCccEEEEEEEEEeCCC-chHhHHHHHHHHHHHhCCCC
Q 026262 97 LVIRQTMEACILTHLMPRSQIDIFVQVLQADG-GTRSACINAATLALQDAGIP 148 (241)
Q Consensus 97 ~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG-~~l~a~i~a~~~AL~~~gip 148 (241)
++|+++|++++.++.||+|+|+|+++|+++|| |++++++||+++||+|+|||
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~i~v~v~vl~~dG~~~~~a~~~A~~~AL~~~~iP 132 (132)
T PF01138_consen 80 SLLERALRSSILLEGYPRWQIHVDVQVLSDDGGNLLDAAINAACLALLDAGIP 132 (132)
T ss_dssp HHHHHHHHHTBSTTTTSSEEEEEEEEEEECSSSSHHHHHHHHHHHHHHHHTCS
T ss_pred HHHhhhccccccccccCceEEEEEEEEEecCCCCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999 99999999999999999998
No 20
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=227.42 Aligned_cols=207 Identities=18% Similarity=0.227 Sum_probs=180.8
Q ss_pred cceEEEeCCC-CCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc-----CCCCCCCchhH
Q 026262 20 RQLRAEIGNV-AKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRST 93 (241)
Q Consensus 20 R~i~i~~~~l-~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~ 93 (241)
|.+.+++|.+ .+|+||+.+++|+|.|+|+|....+.+ +..++..+.|+|.-..++.+.. ++-|+|++++.
T Consensus 89 ~~~~~etG~~a~qA~gav~v~~g~t~vl~t~~~~~~~~----~~~dF~PLtV~y~Ek~~AaGkipggf~kREgrp~d~ei 164 (891)
T PLN00207 89 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLADVPS----EPSDFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEV 164 (891)
T ss_pred EEEEEEhhHHHHhCCCcEEEEECCeEEEEEEEeccCCC----CCCCccceeEeeeeehhhcCccCCceeccCCCCChHHH
Confidence 5799999988 489999999999999999998644322 2357889999998666665542 22367888999
Q ss_pred HHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCc--hHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeCCc
Q 026262 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG--TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171 (241)
Q Consensus 94 ~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~--~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DPt~ 171 (241)
.++++|+|.+++++..+.||+++|.+ +||++||+ ...+++||+++||.++||||++.+.||++|+++|++|+|||.
T Consensus 165 L~sRlIdR~lRPlfp~~~~~etQI~i--~VLsaDg~~~pd~~AInAASaAL~~SgIP~~gpVaAVrVG~idg~~VlnPt~ 242 (891)
T PLN00207 165 LICRLIDRPLRPTMPKGFYHETQILS--WVLSYDGLHSPDSLAVTAAGIAVALSEVPNLKAIAGVRVGLIGGKFIVNPTT 242 (891)
T ss_pred HHHHHHCccchhhccccCCCCcEEEE--EEEeeCCCCChhhHHHHHHHHHHHhhCCCccCceEEEEEEEECCEEEECCCH
Confidence 99999999999999999999877765 89999998 679999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEEcCCCCcEEEEEeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 172 ~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
.|+..++..+.|+. ..+.|++++.+++ ++.+++.++++.|.++++.+++++++.++++.+.
T Consensus 243 ~E~~~s~ldLvvag--t~~~IvMIE~~a~e~see~l~~Al~~a~~aik~i~~~~~el~~~~gk~ 304 (891)
T PLN00207 243 KEMEESELDLIMAG--TDSAILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEIEVLVKKCGKP 304 (891)
T ss_pred HHHhcCCeeEEEEE--cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998888887764 4567999999886 5999999999999999999999999999888765
No 21
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=99.93 E-value=4.6e-25 Score=196.85 Aligned_cols=221 Identities=24% Similarity=0.332 Sum_probs=190.6
Q ss_pred ccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcC-cccccccc--CCCC-ceEEEEEEeecCCc
Q 026262 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGP-REVQNKSQ--QMSD-QALVRCEYSMANFS 78 (241)
Q Consensus 3 ~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p-~e~~~~~~--~~~~-~~~i~v~~~~~~~~ 78 (241)
.|+..|.|.|||..++.|++.++.+.++..|||++|+.|.|+|+|+|+.. .+..++.+ ..++ ...+..+|.|+|++
T Consensus 352 ~i~~~gkR~DGR~ldelR~I~ce~~m~~~lHGSaLFqRGqTQvlctVtl~s~e~a~klD~l~~~~~~~~FmLhY~FPPya 431 (760)
T KOG1067|consen 352 RILEEGKRCDGRDLDELRNISCEVDMLKTLHGSALFQRGQTQVLCTVTLDSLESAQKLDSLIGPDNGINFMLHYEFPPYA 431 (760)
T ss_pred HHHhcccccCCcchhhhcccceecCccccccchhhhhcCceeEEEEEEcCCHHHhhhhhhhccCccCceEEEEeccCCcc
Confidence 35678999999999999999999999999999999999999999999842 22222221 1233 34899999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEE
Q 026262 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~ 158 (241)
+++-.+.+.+++++.....+-+++|.+++. +.||. +|+|.-.|++.+|+-..|.+++-++||+|+|+|++.-++++.+
T Consensus 432 t~Evgkig~~nRRE~GhgaLAEkaL~~vlP-~dfPf-tIRv~SeVleSnGSsSMASvCGGslALmDaGvPv~a~vAGvai 509 (760)
T KOG1067|consen 432 TNEVGKIGGLNRRELGHGALAEKALLPVLP-EDFPF-TIRVTSEVLESNGSSSMASVCGGSLALMDAGVPVSAHVAGVAI 509 (760)
T ss_pred ccccccccCCcccccCchhHhhhhhhccCc-ccCce-EEEEeeeeeecCCcchHHhhhcchhhhhhcCCccccccceeEE
Confidence 999888888889988888899999999998 88998 8999999999999999999999999999999999999999999
Q ss_pred eeeC-----------CeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 159 GYLN-----------STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227 (241)
Q Consensus 159 ~~~~-----------~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~ 227 (241)
|++- -.++.|....|+-..+..+.|| .+++-++.+ .++.+-+.++++.|..+-.+|.+.|.++
T Consensus 510 Glvt~td~e~g~i~dyriltDIlGiEd~~GDMDFKiA--Gt~dGvTA~----gi~l~Iv~eal~~a~~ar~~Il~~m~k~ 583 (760)
T KOG1067|consen 510 GLVTKTDPEKGEIEDYRILTDILGIEDYNGDMDFKIA--GTNDGVTAL----GIPLKIVMEALQKAREARLQILDIMEKN 583 (760)
T ss_pred EeEeccCcccCCcccceeehhhcchhhhcCCcceeec--cccCcceec----CCcHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9862 1588999999999888899987 455667666 4788999999999999999999999887
Q ss_pred HHHH
Q 026262 228 LLEN 231 (241)
Q Consensus 228 l~~~ 231 (241)
+.+.
T Consensus 584 i~~P 587 (760)
T KOG1067|consen 584 INSP 587 (760)
T ss_pred cCCc
Confidence 6543
No 22
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.8e-24 Score=195.09 Aligned_cols=229 Identities=24% Similarity=0.356 Sum_probs=199.0
Q ss_pred ccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEc-Ccccccccc--CCCCceEEEEEEeecCCcc
Q 026262 3 FVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYG-PREVQNKSQ--QMSDQALVRCEYSMANFST 79 (241)
Q Consensus 3 ~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~-p~e~~~~~~--~~~~~~~i~v~~~~~~~~~ 79 (241)
+|+..++|+|||..++.|++.++.|+++++|||+.+..|.|+.++.++. +....+-.+ ..+....+..+|+|+||+.
T Consensus 306 ~Il~~~vR~DGR~~~~VRpi~~ev~~lpr~HGS~LFtRGeTQal~v~TLG~~~d~Qvid~l~~e~~krfm~hYNFPp~Sv 385 (692)
T COG1185 306 LILEGKVRIDGRFGDEVRPIGIEVGVLPRTHGSALFTRGETQALVVVTLGTPRDAQVIDILEGEYKKRFLLHYNFPPFSV 385 (692)
T ss_pred HHhcCCcccCCCCcceeeeeeEEecCCCCccchhhhccCCCcceEEEEcCCcchhhhhhhccchhhhheeeeccCCCCCc
Confidence 5788999999999999999999999999999999999999998888863 221112111 2223567889999999999
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhc-cCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEE
Q 026262 80 GDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (241)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~ 158 (241)
++.++.+.|++++....++-++++.+++. .+.||+ +|++.-.|++.+|+-..|.+++.++||+++|+|++..++++..
T Consensus 386 GE~g~~g~p~RREiGHG~LA~Ral~~vlp~~e~fpy-tiRvVsEi~eSNGSsSmaSVCg~sLaLmdAGVPIk~pVAGIAM 464 (692)
T COG1185 386 GETGRMGSPGRREIGHGALAERALAPVLPSEEEFPY-TIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAM 464 (692)
T ss_pred cccCCCCCCCcccccCchhhHHHHhhhCCchhcCCc-eeeeeehhhcccCcccchhhhhhHHHHHhCCCcccccccchhc
Confidence 99988888999999999999999999998 578998 8999999999999999999999999999999999999999999
Q ss_pred eeeC-C---eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 159 GYLN-S---TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLLEN 231 (241)
Q Consensus 159 ~~~~-~---~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~ 231 (241)
|++. + .++.|....|+...+..|-|+ .+.+-++.++++- .++.+.+.+++..|+.+..++...|.+++.+.
T Consensus 465 GLI~eg~~~~vLsDI~G~EDhlGDMDFKVA--GT~~GiTAlQMDiKi~Git~eim~~AL~QAk~aRlhIL~~M~~ai~~p 542 (692)
T COG1185 465 GLIKEGDKYAVLSDILGDEDHLGDMDFKVA--GTDDGITALQMDIKIKGITKEIMKKALEQAKGARLHILIVMNEAISEP 542 (692)
T ss_pred cceecCCceEeeccccccccccCCceeEEe--cCCCcceeeeeeeeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9983 2 477899999988888889987 4667888998873 47899999999999999999999999999988
Q ss_pred HHH
Q 026262 232 TKQ 234 (241)
Q Consensus 232 ~~~ 234 (241)
.++
T Consensus 543 r~e 545 (692)
T COG1185 543 RKE 545 (692)
T ss_pred hhh
Confidence 754
No 23
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=99.83 E-value=4.3e-19 Score=166.50 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=170.4
Q ss_pred cceEEEeCCC-CCCceeEEEEe-CCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc-----CCCCCCCchh
Q 026262 20 RQLRAEIGNV-AKADGSAVFEM-GNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRS 92 (241)
Q Consensus 20 R~i~i~~~~l-~~a~GSa~v~~-G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~~ 92 (241)
|.+.+++|-+ .+||||+.+++ |+|.|+|+|....+.+ +..++.++.|+|.-..++.+.. ++-++|++++
T Consensus 17 ~~~~~etG~~A~qA~Gav~v~~~G~t~vl~t~~~~~~~~----~~~dF~PLtV~y~Ek~yA~GkiPggf~kREgrps~~e 92 (719)
T TIGR02696 17 RTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQPK----DQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDA 92 (719)
T ss_pred EEEEEEcchhHhhCCceEEEEecCCeEEEEEEEecCCCC----CCCCCcceeEeeeehhhhcCccCCceeccCCCCChhh
Confidence 4799999988 48999999999 9999999998643321 2357899999998766666543 2236788888
Q ss_pred HHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCc--hHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeCC
Q 026262 93 TEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG--TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLN 170 (241)
Q Consensus 93 ~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~--~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DPt 170 (241)
...+++|+|.++|+..- .|.+ -++|.+++|+.|+. .--.++||+++||.-++||+.+.+.++.+|.++|++|++||
T Consensus 93 iL~sRliDR~iRPLFp~-~~~~-e~qi~~~vls~D~~~~pdvla~~~ASaAl~iSdiPf~gPv~~vrVg~i~g~~viNPt 170 (719)
T TIGR02696 93 ILTCRLIDRPLRPSFVK-GLRN-EVQVVVTVLSLNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIDGQWVAFPT 170 (719)
T ss_pred hHHHHhhCCCCccCCCC-CCCc-ceEEEEEEEEcCCCCChHHHHHHHHHHHHHhcCCCCCCceEEEEEEEECCEEEECcC
Confidence 89999999999998763 3333 57778889998884 45689999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEEcC--C-CCcEEEEEe------------eec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 171 YVEDSAGGPDVTVGILP--T-LDKVTLLQM------------DAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENT 232 (241)
Q Consensus 171 ~~Ee~~~~~~~~v~~~~--~-~~~i~~~~~------------~g~-~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~ 232 (241)
..|.+.++-.++|+... + .+.+++++. +++ ++.+.+.+++..|.+..+.+.+++++......
T Consensus 171 ~~~~~~s~ldLvvagt~~~~~~~~i~MiE~~a~~~~~~~~~~~a~e~~e~~~~~Ai~~a~~~i~~~~~~~~~l~~~~g 248 (719)
T TIGR02696 171 HEQLEGAVFDMVVAGRVLENGDVAIMMVEAEATEKTWDLVKGGAEAPTEEVVAEGLEAAKPFIKVLCRAQADLAEKAA 248 (719)
T ss_pred HHHHhhCeeeEEEEeeecCCCCccEEEEecCCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998888888887521 1 238999997 443 79999999999999999999999999665554
No 24
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=9.5e-17 Score=147.94 Aligned_cols=204 Identities=22% Similarity=0.326 Sum_probs=172.7
Q ss_pred cceEEEeCCC-CCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc-----CCCCCCCchhH
Q 026262 20 RQLRAEIGNV-AKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRST 93 (241)
Q Consensus 20 R~i~i~~~~l-~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~ 93 (241)
|++.+++|.+ .+|+||+++++|+|.|+++|.+.. . .+..|+.++.|+|.-..++.++. ++-|+|++++.
T Consensus 14 ~~l~~etg~~A~qa~gav~~~~gdt~vl~t~~~~~-~----~~~~dF~PLtV~y~Ek~yaaGkiPGgf~kREGrpse~e~ 88 (692)
T COG1185 14 RTLTLETGKIARQANGAVLVRYGDTVVLATVVASK-P----KEGQDFFPLTVNYEEKTYAAGKIPGGFFKREGRPSEKEI 88 (692)
T ss_pred eeEEEEcchhhhhcCccEEEEECCeEEEEEEeecC-C----CCCCCccceeEeeeeehhccCcCCCcccccCCCCCccch
Confidence 8899999998 489999999999999999999854 2 13468899999998666666643 22367888898
Q ss_pred HHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCc--hHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeCCc
Q 026262 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG--TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171 (241)
Q Consensus 94 ~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~--~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DPt~ 171 (241)
..+++|+|-++++.... |- --++|.++|++.|+. .--.+++++++||.-++||+...+.++.+|+++|.++++||.
T Consensus 89 L~sRLIDRpiRPlFp~g-~~-~evqIv~tvls~D~~~~pdi~a~~gaSaAl~is~iPf~gpi~~vrvg~idg~~vlNPt~ 166 (692)
T COG1185 89 LTSRLIDRPIRPLFPKG-FR-NEVQIVNTVLSVDPENDPDILAMVGASAALSLSGIPFLGPIGAVRVGYIDGIFVLNPTL 166 (692)
T ss_pred hhhhhcccccccccchh-hc-cceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCccCccceEEEEEECCEEEECCCh
Confidence 99999999998877532 22 257788889999885 446889999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEEcCCCCcEEEEEeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENT 232 (241)
Q Consensus 172 ~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~ 232 (241)
.|.+.+...++|+ .+...|.+++.+.. ++.+++.+++..+.+..+.+.+++++......
T Consensus 167 ~e~~~s~lDlvVA--GT~~aV~MVE~~a~~l~E~~ml~Av~fg~~~~~~~~~~qe~l~~~~g 226 (692)
T COG1185 167 EELEESKLDLVVA--GTKDAVNMVESEADELDEEVMLEAVEFGHEAIQSVINAQEELALEVG 226 (692)
T ss_pred HHhhhcceeeEec--CChhhhheeecccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998888888876 56668999998864 78999999999999999999999999887766
No 25
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=99.66 E-value=7.3e-16 Score=138.41 Aligned_cols=209 Identities=19% Similarity=0.244 Sum_probs=164.9
Q ss_pred CCcceEEEeCCCC-CCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc-----CCCCCCCch
Q 026262 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRR 91 (241)
Q Consensus 18 e~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~ 91 (241)
--|.+.+++|.+. .|+||+.++.|+|.|+++|..-. +|+ .+++..+.|+|.....+.+.. ++-+.+.++
T Consensus 54 GnR~i~~etGklaRfAngsvvv~~GeT~Vm~Tv~~a~---~PS--p~qFlPL~VdYqeK~aAvGRip~~fmRREg~tkdk 128 (760)
T KOG1067|consen 54 GNREILFETGKLARFANGSVVVQMGETAVMTTVVLAD---KPS--PPQFLPLVVDYQEKFAAVGRIPGNFMRREGRTKDK 128 (760)
T ss_pred CCeEEEEecchhhhhcCCcEEEccCCeEEEEEEEecC---CCC--ccccceEEEehhhhhhhhccCCCcccccccCCcch
Confidence 5699999999996 59999999999999999998632 333 245888999997543333321 122345556
Q ss_pred hHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCc--hHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeC
Q 026262 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGG--TRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (241)
Q Consensus 92 ~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~--~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DP 169 (241)
+....++|++.+++...-..|. ..++-..+|..||- .--.++|++++||..+.+|+...+.++.+|+++|++|++|
T Consensus 129 EiL~~rLidrsirplfp~g~~~--etqi~~n~Ls~dG~~~pdvlainaas~Al~lsdvpw~gpig~vRigLi~Ge~vVNP 206 (760)
T KOG1067|consen 129 EILTGRLIDRPIRPLFPKGFYH--ETQILCNVLSSDGVHDPDVLAINAASAALSLSDVPWNGPIGAVRIGLIDGEFVVNP 206 (760)
T ss_pred hheeeeccccccccCCcccchh--HHHHHhhheecccccCchHHHHhHHHHHhhhccCCCCCceeeeEeeeecceEEeCc
Confidence 6666778888877766443333 33444567888883 3457899999999999999999999999999999999999
Q ss_pred CccccccCCCcEEEEEcCCCCcEEEEEeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 170 t~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
|..|.+.+.-.+.++. .+.++++++..+. +..+++.+++..+.+.++.+.+.|....+++.+++
T Consensus 207 T~kEmssS~Lnlvvag--t~~~~vmle~~s~~i~qqdl~~Aikvg~~~~q~~i~~i~~L~k~~Gk~K 271 (760)
T KOG1067|consen 207 TRKEMSSSQLNLVVAG--TKSQTVMLEGSSNNILQQDLLHAIKVGVKEAQQIIQGIERLAKKYGKQK 271 (760)
T ss_pred chhhhhhccceeEEEe--ccceEEEEEcccccccHHHHHHHHHhccHHHHHHHHHHHHHHHHhCccc
Confidence 9999999998888875 4789999997764 78999999999999999999999999888877655
No 26
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=99.33 E-value=5e-12 Score=85.71 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=56.2
Q ss_pred CeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeec--CCHHHHHHHHHHHHHH
Q 026262 151 DIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK--LPTNTFEDVMQLAIEG 216 (241)
Q Consensus 151 ~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~--~~~~~l~~~l~~a~~~ 216 (241)
|+|+++|++++++.+++|||.+||..+.+.++++++++.+.+..++.+|. ++++++.++++.|.++
T Consensus 1 ~~~~avt~~~i~~~~v~Dpt~~Ee~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~i~~A~~~ 68 (68)
T PF03725_consen 1 DPPVAVTVGIIDGELVVDPTAEEESLSDSSLTLAVDGTGNICTLQKSGGGSELSEDQLEEAIELAKKA 68 (68)
T ss_dssp SEEEEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSSEEEEEEEEESSEEEHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEECCEEEECCCHHHHhhcCCcEEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999766555566677765 9999999999999874
No 27
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=54.67 E-value=28 Score=20.97 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.7
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 199 AKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 199 g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
-.++.+.+.++-++|.+......+.++++++...++
T Consensus 7 ~~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~k 42 (44)
T PF12651_consen 7 FSLDKELYEKLKELSEETGIPKSKLLREALEDYLEK 42 (44)
T ss_pred EecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999987765
No 28
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=51.18 E-value=22 Score=20.37 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 201 LPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 201 ~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
++.+....+-+.|.+......++|+.++.++.++
T Consensus 6 l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5678888888899999999999999999888754
No 29
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=46.88 E-value=83 Score=24.81 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=24.1
Q ss_pred EEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHH
Q 026262 182 TVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIE 215 (241)
Q Consensus 182 ~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~ 215 (241)
.|.+ ...|++.+.+ +|.++++++.+.+++-.+
T Consensus 128 iiVl-DK~G~V~F~k-~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 128 IIVL-DKQGKVQFVK-EGALSPAEVQQVIALLKK 159 (160)
T ss_pred EEEE-cCCccEEEEE-CCCCCHHHHHHHHHHHhc
Confidence 3434 5778888755 899999999999887543
No 30
>PF03333 PapB: Adhesin biosynthesis transcription regulatory protein; InterPro: IPR004356 P pili, or fimbriae, are ~68A in diameter and 1 micron in length, the bulk of which is a fibre composed of the main structural protein PapA []. At its tip, the pilus is terminated by a fibrillum consisting of repeating units of the PapE protein. This, in turn, is topped by the adhesins, PapF and PapG, both of which are needed for receptor binding. The tip fibrillum is anchored to the main PapA fibre by the PapK pilus-adaptor protein. PapH, an outer membrane protein, then anchors the entire rod in the bacterial envelope []. A cytoplasmic chaperone (PapD) assists in assembling the monomers of the macromolecule in the membrane. All of the functional pap genes are arranged in a cluster (operon) on the Escherichia coli genome. It is believed that selective pressure exerted by the host's urinal and intestinal tract isoreceptors forced the spread of this operon to other strains via lateral transfer []. PapB, encoded within the cluster, acts as a transcriptional regulator of the functional pap genes and is located in the bacterial cytoplasm []. Its mechanism involves differential binding to separate sites in the cluster, suggesting that this protein is both an activator and repressor of pilus-adhesion transcription. The protein shares similarity with other E. coli fimbrial- adhesion transcription regulators, such as AfaA, DaaA and FanB. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 3M8J_A.
Probab=46.45 E-value=26 Score=24.93 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=26.6
Q ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 198 DAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 236 (241)
Q Consensus 198 ~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 236 (241)
.|.+++++|.-+++++.-.+.++..+++..|..-.+++.
T Consensus 20 pG~vs~e~F~lLl~ls~IrS~kiI~AL~dyLV~G~srke 58 (91)
T PF03333_consen 20 PGKVSEEHFWLLLELSSIRSEKIIAALRDYLVDGLSRKE 58 (91)
T ss_dssp TT-S-HHHHHHHHHHS----HHHHHHHHHHHTT---HHH
T ss_pred CCCcCHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCcHHH
Confidence 378999999999999999999999999999987666554
No 31
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=40.49 E-value=1.2e+02 Score=20.94 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=34.3
Q ss_pred ccCCCcEEEEEcCCCCcEEEEEeee----cCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 026262 175 SAGGPDVTVGILPTLDKVTLLQMDA----KLPTNTFEDVMQLAIEGCKA-VANYIREVLLE 230 (241)
Q Consensus 175 ~~~~~~~~v~~~~~~~~i~~~~~~g----~~~~~~l~~~l~~a~~~~~~-i~~~i~~~l~~ 230 (241)
...++.++|.+ +..|++..++.+- +.+++.+.+++-.|...+.+ ..+..++.+.+
T Consensus 26 ~s~~g~V~V~v-~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~~a~~~~~~~~~~ 85 (93)
T PF02575_consen 26 TSGDGLVTVTV-NGNGEVVDIEIDPSALRPLDPEELEDLIVEAVNDAQKKAREKAQEEMAE 85 (93)
T ss_dssp EETCCTEEEEE-ETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEE-ecCceEEEEEEehHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888877 4678999998863 36778888888777766655 33334444433
No 32
>PHA01748 hypothetical protein
Probab=34.19 E-value=99 Score=19.94 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026262 200 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECR 238 (241)
Q Consensus 200 ~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~~ 238 (241)
.++.+.+.++-.+|.+....-.++|++++....++....
T Consensus 8 rLp~el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~~~~~ 46 (60)
T PHA01748 8 KIEEDLLELLDRYAIKHGLNRSEAIRKAIEKMVKDELKK 46 (60)
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 477888888878887777777777777777776665543
No 33
>PHA01623 hypothetical protein
Probab=28.97 E-value=1.2e+02 Score=19.21 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 200 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 200 ~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
.++.+.+.++-..|.+......++|++++..+.++.
T Consensus 19 rldeel~~~Ld~y~~~~g~~rSe~IreAI~~yL~~~ 54 (56)
T PHA01623 19 YMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54 (56)
T ss_pred EeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 477888888889999888888888999988887664
No 34
>PRK14626 hypothetical protein; Provisional
Probab=27.03 E-value=2.6e+02 Score=20.52 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=31.5
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEeeec-CC---HHHHHHHHHHHHHHHHHH
Q 026262 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK-LP---TNTFEDVMQLAIEGCKAV 220 (241)
Q Consensus 173 Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~~---~~~l~~~l~~a~~~~~~i 220 (241)
|.+...+.++|.+ +-.+++..++.+-. ++ .+.+++++-.|...+.+-
T Consensus 34 ~g~sggG~VkV~~-nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A~~k 84 (110)
T PRK14626 34 VVEVGGGMVKVVS-NGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEASRR 84 (110)
T ss_pred EEEecCcEEEEEE-ECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHH
Confidence 3445567788866 56689999987643 33 567777777776666543
No 35
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=26.84 E-value=68 Score=19.95 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=25.1
Q ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 198 DAKLPTNTFEDVMQLAIEGCKAVANYIRE 226 (241)
Q Consensus 198 ~g~~~~~~l~~~l~~a~~~~~~i~~~i~~ 226 (241)
+|.++..++.+++..+.+.+..+.+.+..
T Consensus 8 ~~~itv~~~rd~lg~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLGLSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHCccHHHHHHHHHHHhc
Confidence 57789999999999999999999998865
No 36
>KOG2925 consensus Predicted translation initiation factor related to eIF-1A [Translation, ribosomal structure and biogenesis]
Probab=25.76 E-value=27 Score=27.15 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecC
Q 026262 162 NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKL 201 (241)
Q Consensus 162 ~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~ 201 (241)
++.+|+||+.+|++...-.-.|++.-...++-.+++.|..
T Consensus 64 g~FvvVdpiee~~~g~KVkgeI~yVl~~d~vr~lqk~g~W 103 (167)
T KOG2925|consen 64 GSFVVVDPIEEEKSGSKVKGEICYVLFFDQVRLLQKSGEW 103 (167)
T ss_pred CCEEEEccccccccCCccceEEEEEEccHHHHHHHHcCCc
Confidence 4568899999887655444444443334455555555543
No 37
>PRK15215 fimbriae biosynthesis regulatory protein; Provisional
Probab=22.92 E-value=1.1e+02 Score=22.01 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=32.7
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026262 199 AKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 199 g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
|.++.++|.=+++++.-.+.++..++++.|-.-.+++
T Consensus 29 G~v~eehF~LLieIS~IrS~KvI~AL~dyLV~G~trk 65 (100)
T PRK15215 29 AKVNEEHFWLLIGISSIHSEKIIQALRDYLVFGVSRK 65 (100)
T ss_pred CccCHHHHHHHHHHcccchHHHHHHHHHHHHcCccHH
Confidence 7799999999999999999999999999887665544
No 38
>PF13974 YebO: YebO-like protein
Probab=22.41 E-value=1.8e+02 Score=20.12 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026262 210 MQLAIEGCKAVANYIREVLLENTKQLECRR 239 (241)
Q Consensus 210 l~~a~~~~~~i~~~i~~~l~~~~~~~~~~~ 239 (241)
+.+|..++++..+.+++.++++..++...+
T Consensus 18 VnRaSvRANEQI~LL~~ileqQKrQn~LL~ 47 (80)
T PF13974_consen 18 VNRASVRANEQIELLEEILEQQKRQNALLR 47 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999988876543
No 39
>PRK14627 hypothetical protein; Provisional
Probab=21.05 E-value=3.2e+02 Score=19.56 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=34.0
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEeeec-C---CHHHHHHHHHHHHHHHHHHHHH
Q 026262 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK-L---PTNTFEDVMQLAIEGCKAVANY 223 (241)
Q Consensus 173 Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~---~~~~l~~~l~~a~~~~~~i~~~ 223 (241)
|-....+.++|.+ +-.+++..++.+-. + +.+.+++++-.|...+.+=.+.
T Consensus 30 eg~sggG~VkV~~-~G~~~v~~i~Idp~ll~~ed~e~LeDLI~aA~N~A~~k~~~ 83 (100)
T PRK14627 30 EGTAGGGAITVKM-NGHREVQSITISPEVVDPDDVEMLQDLLLVAINDASRKAQQ 83 (100)
T ss_pred EEEEcCCeEEEEE-EcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677788865 56689999987632 3 4677888888887776654433
No 40
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=20.98 E-value=6.6e+02 Score=23.11 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCC-----------------CCeeEEE
Q 026262 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPM-----------------RDIVTSC 156 (241)
Q Consensus 94 ~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~-----------------~~~~~~v 156 (241)
++...|.+.++.......+|...|-|. +|. -.++-.+.++|++.|..+ -..|+.+
T Consensus 73 ~L~~aL~k~~se~~~~~~~~~~eVlVT------~GA--~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v 144 (420)
T KOG0257|consen 73 QLRKALAKAYSEFYGGLLDPDDEVLVT------AGA--NEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFV 144 (420)
T ss_pred HHHHHHHHHHHHHhccccCCcccEEEe------cCc--hHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceee
Confidence 466677777776444445565444443 454 223556788999999642 1222222
Q ss_pred EEeeeC-----CeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEe---eec-CCHHHHHHHHHHHHHHH
Q 026262 157 SAGYLN-----STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQM---DAK-LPTNTFEDVMQLAIEGC 217 (241)
Q Consensus 157 s~~~~~-----~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~---~g~-~~~~~l~~~l~~a~~~~ 217 (241)
.....+ +.+.+||-..|-+ +..+++-|+.... .|+ ++.++|+++-++|++.-
T Consensus 145 ~~~~~~g~~~s~~~~~D~~~le~~---------~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~ 205 (420)
T KOG0257|consen 145 PLKPKEGNVSSSDWTLDPEELESK---------ITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHG 205 (420)
T ss_pred ccccccccccCccccCChHHHHhh---------ccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCC
Confidence 222111 2334444443332 2223333333333 366 79999999999998853
Done!