BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026263
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 11/71 (15%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHREL 63
FAK++LP YFKHNN +SFVRQLN YGFRK+V D EF + F RG +L
Sbjct: 54 FAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQL 113
Query: 64 LTEIRRRKTAT 74
L I+R+ T+
Sbjct: 114 LENIKRKVTSV 124
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA----------DKWEFANENFRRGHRELL 64
FAK+LLP +KHNN +SF+RQLN YGF KI + D+ EF++ F+R LL
Sbjct: 41 FAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLL 100
Query: 65 TEIRRR 70
+I+R+
Sbjct: 101 DQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
F +++LP YFKH+NF+SFVRQLN YG+ K+ K WEF NE
Sbjct: 49 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
F +++LP YFKH+NF+SFVRQLN YG+ K+ K WEF NE
Sbjct: 39 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
F +++LP YFKH+NF+SFVRQLN YG+ K+ K WEF NE
Sbjct: 37 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
Length = 92
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
F +++LP YFKH+NF+SFVRQLN YG+ K+ K WEF NE
Sbjct: 39 FVQEVLPKYFKHSNFASFVRQLNXYGWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
F +++L YFKH+NF+SFVRQLN YG+ K+ K WEF NE
Sbjct: 37 FVQEVLAKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
F +++L YFKH+NF+SFVRQLN YG+ K+ K WEF NE
Sbjct: 37 FVQEVLKKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1NM5|A Chain A, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
pdb|1NM5|B Chain B, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
Length = 384
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 11 KLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFA 52
K+ +A +L+P + N+ Q N G+R ++ +EFA
Sbjct: 116 KITAYAMELMPRISRANSMDILSSQSNLAGYRAVIDGAYEFA 157
>pdb|1I60|A Chain A, Structural Genomics, Ioli Protein
pdb|1I6N|A Chain A, 1.8 A Crystal Structure Of Ioli Protein With A Binding
Zinc Atom
Length = 278
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 18 DLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIR 68
D LP Y K ++ T+ + + + F N +GH E++TE +
Sbjct: 37 DKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFK 87
>pdb|2FRD|A Chain A, Structure Of Transhydrogenase
(di.s138a.nadh)2(diii.nadph)1 Asymmetric Complex
pdb|2FRD|B Chain B, Structure Of Transhydrogenase
(di.s138a.nadh)2(diii.nadph)1 Asymmetric Complex
Length = 384
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 11 KLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFA 52
K+ +A +L+P + + Q N G+R ++ +EFA
Sbjct: 116 KITAYAMELMPRISRAQSMDILASQSNLAGYRAVIDGAYEFA 157
>pdb|2FSV|A Chain A, Structure Of Transhydrogenase
(Di.D135n.Nad+)2(Diii.E155w.Nadp+)1 Asymmetric Complex
pdb|2FSV|B Chain B, Structure Of Transhydrogenase
(Di.D135n.Nad+)2(Diii.E155w.Nadp+)1 Asymmetric Complex
Length = 384
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 11 KLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFA 52
K+ +A +L+P + + + Q N G+R ++ +EFA
Sbjct: 116 KITAYAMELMPRISRAQSMNILSSQSNLAGYRAVIDGAYEFA 157
>pdb|1L7D|B Chain B, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
Length = 384
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 11 KLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFA 52
K+ +A +L+P + + Q N G+R ++ +EFA
Sbjct: 116 KITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFA 157
>pdb|1HZZ|A Chain A, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
pdb|1HZZ|B Chain B, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
pdb|1L7D|A Chain A, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
pdb|1L7D|C Chain C, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
pdb|1L7D|D Chain D, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
Without Bound Nad(H)
pdb|1L7E|A Chain A, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1L7E|B Chain B, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1L7E|C Chain C, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1L7E|D Chain D, Crystal Structure Of R. Rubrum Transhydrogenase Domain I
With Bound Nadh
pdb|1U28|A Chain A, R. Rubrum Transhydrogenase Asymmetric Complex
(Di.Nad+)2(Diii.Nadp+)1
pdb|1U28|B Chain B, R. Rubrum Transhydrogenase Asymmetric Complex
(Di.Nad+)2(Diii.Nadp+)1
pdb|1U2D|A Chain A, Structre Of Transhydrogenaes (Di.Nadh)2(Diii.Nadph)1
Asymmetric Complex
pdb|1U2D|B Chain B, Structre Of Transhydrogenaes (Di.Nadh)2(Diii.Nadph)1
Asymmetric Complex
pdb|1U2G|A Chain A, Transhydrogenase (Di.Adpr)2(Diii.Nadph)1 Asymmetric
Complex
pdb|1U2G|B Chain B, Transhydrogenase (Di.Adpr)2(Diii.Nadph)1 Asymmetric
Complex
pdb|1XLT|A Chain A, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|B Chain B, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|D Chain D, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|E Chain E, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|G Chain G, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|1XLT|H Chain H, Crystal Structure Of Transhydrogenase [(Domain I)2:domain
Iii] Heterotrimer Complex
pdb|2OO5|A Chain A, Structure Of Transhydrogenase (Di.H2nadh)2(Diii.Nadp+)1
Asymmetric Complex
pdb|2OO5|B Chain B, Structure Of Transhydrogenase (Di.H2nadh)2(Diii.Nadp+)1
Asymmetric Complex
pdb|2OOR|A Chain A, Structure Of Transhydrogenase (Di.Nad+)2(Diii.H2nadph)1
Asymmetric Complex
pdb|2OOR|B Chain B, Structure Of Transhydrogenase (Di.Nad+)2(Diii.H2nadph)1
Asymmetric Complex
Length = 384
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 11 KLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFA 52
K+ +A +L+P + + Q N G+R ++ +EFA
Sbjct: 116 KITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFA 157
>pdb|1PTJ|A Chain A, Crystal Structure Analysis Of The Di And Diii Complex Of
Transhydrogenase With A Thio-Nicotinamide Nucleotide
Analogue
pdb|1PTJ|B Chain B, Crystal Structure Analysis Of The Di And Diii Complex Of
Transhydrogenase With A Thio-Nicotinamide Nucleotide
Analogue
Length = 381
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 11 KLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFA 52
K+ +A +L+P + + Q N G+R ++ +EFA
Sbjct: 116 KITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFA 157
>pdb|3Q0X|A Chain A, N-Terminal Coiled-Coil Dimer Domain Of C. Reinhardtii
Sas-6 Homolog Bld12p
pdb|3Q0X|B Chain B, N-Terminal Coiled-Coil Dimer Domain Of C. Reinhardtii
Sas-6 Homolog Bld12p
Length = 228
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 119 DLSDENAKLRRDNETLSSELAQAKKQCDEL 148
DLSD+ ++ R D +++ ++LAQ ++Q +L
Sbjct: 182 DLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 20 LPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTATGPSAQ 79
+ N+ + N S+F++ + +YG + D +E AN+ F G+ +T+++ A A+
Sbjct: 67 MQNWHQLENLSNFIKAMVSYGMNPV--DLFE-ANDLFESGN---MTQVQVSLLALAGKAK 120
Query: 80 TAG 82
T G
Sbjct: 121 TKG 123
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 133 TLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKM 189
T +++LAQ K+ CD + +L + V V + G + LDGL + +DEK+
Sbjct: 435 TEAAQLAQKKRYCDVVKAYL-DTVPVNQRGGISVWGTTDANTWLDGLYREQFEDEKI 490
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 133 TLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKM 189
T +++LAQ K+ CD + +L + V V + G + LDGL + +DEK+
Sbjct: 435 TEAAQLAQKKRYCDVVKAYL-DTVPVNQRGGISVWGTTDANTWLDGLYREQFEDEKI 490
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,008,795
Number of Sequences: 62578
Number of extensions: 279608
Number of successful extensions: 667
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 25
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)