Query 026263
Match_columns 241
No_of_seqs 245 out of 957
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 99.9 1.5E-28 3.3E-33 224.1 6.1 74 3-76 37-112 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 99.9 1.4E-25 2.9E-30 175.3 2.1 70 3-72 24-102 (103)
3 smart00415 HSF heat shock fact 99.9 8.1E-25 1.8E-29 172.1 3.6 69 2-70 26-105 (105)
4 COG5169 HSF1 Heat shock transc 99.9 1.3E-22 2.7E-27 184.3 4.0 74 2-75 34-117 (282)
5 PF07407 Seadorna_VP6: Seadorn 86.8 0.87 1.9E-05 43.1 4.2 29 115-143 32-60 (420)
6 PF02183 HALZ: Homeobox associ 83.6 3.2 7E-05 28.0 4.8 27 116-142 13-39 (45)
7 PF05377 FlaC_arch: Flagella a 83.2 5.7 0.00012 28.1 6.0 37 115-151 7-43 (55)
8 PF06005 DUF904: Protein of un 82.1 5.4 0.00012 29.5 5.9 14 117-130 20-33 (72)
9 PF04340 DUF484: Protein of un 81.4 5.9 0.00013 34.7 6.9 82 52-166 17-99 (225)
10 KOG4196 bZIP transcription fac 80.7 5.5 0.00012 32.9 6.0 36 118-153 84-119 (135)
11 smart00338 BRLZ basic region l 78.5 6 0.00013 28.0 5.0 32 117-148 28-59 (65)
12 PF00170 bZIP_1: bZIP transcri 78.0 11 0.00024 26.5 6.3 34 116-149 27-60 (64)
13 smart00338 BRLZ basic region l 77.1 11 0.00024 26.6 6.0 31 115-145 33-63 (65)
14 PF12709 Kinetocho_Slk19: Cent 76.5 9.4 0.0002 29.5 5.8 38 115-152 49-86 (87)
15 PF10883 DUF2681: Protein of u 73.7 9.3 0.0002 29.5 5.2 30 117-146 25-54 (87)
16 PF00170 bZIP_1: bZIP transcri 71.4 13 0.00028 26.2 5.3 30 115-144 33-62 (64)
17 PF06156 DUF972: Protein of un 70.6 13 0.00028 29.5 5.6 10 161-170 76-85 (107)
18 PF06156 DUF972: Protein of un 70.2 7.8 0.00017 30.8 4.2 24 120-143 27-50 (107)
19 PF02183 HALZ: Homeobox associ 69.9 25 0.00055 23.7 6.1 33 116-148 6-38 (45)
20 PF02344 Myc-LZ: Myc leucine z 69.3 11 0.00024 23.8 3.8 28 118-145 4-31 (32)
21 smart00340 HALZ homeobox assoc 68.3 7.6 0.00016 26.2 3.1 18 118-135 15-32 (44)
22 PF06005 DUF904: Protein of un 67.9 32 0.00068 25.5 6.8 29 122-150 39-67 (72)
23 PRK13922 rod shape-determining 67.7 14 0.0003 33.2 5.8 28 116-143 70-97 (276)
24 PRK00888 ftsB cell division pr 67.6 10 0.00022 29.9 4.3 29 115-143 34-62 (105)
25 TIGR03752 conj_TIGR03752 integ 67.5 14 0.0003 36.6 6.1 24 115-138 73-96 (472)
26 TIGR02894 DNA_bind_RsfA transc 67.2 19 0.0004 30.9 6.1 33 120-152 116-148 (161)
27 PF12017 Tnp_P_element: Transp 66.1 29 0.00062 31.3 7.5 51 118-170 14-67 (236)
28 PF07334 IFP_35_N: Interferon- 65.8 12 0.00027 28.1 4.3 26 118-143 3-28 (76)
29 TIGR02449 conserved hypothetic 65.6 42 0.0009 24.5 6.8 36 115-150 7-42 (65)
30 PRK14872 rod shape-determining 65.5 13 0.00027 35.4 5.3 29 115-143 57-85 (337)
31 PRK13169 DNA replication intia 64.6 12 0.00025 30.1 4.2 10 161-170 73-82 (110)
32 PF07716 bZIP_2: Basic region 63.6 18 0.0004 24.7 4.5 27 117-143 27-53 (54)
33 TIGR00219 mreC rod shape-deter 62.8 23 0.00051 32.4 6.4 24 117-140 68-91 (283)
34 KOG4571 Activating transcripti 62.7 18 0.00039 33.7 5.6 27 118-144 258-284 (294)
35 KOG3119 Basic region leucine z 62.7 13 0.00028 34.0 4.7 39 119-157 219-257 (269)
36 PRK10963 hypothetical protein; 62.2 56 0.0012 28.8 8.5 73 52-157 14-86 (223)
37 PF14197 Cep57_CLD_2: Centroso 62.0 15 0.00032 27.0 4.0 28 115-142 40-67 (69)
38 KOG4343 bZIP transcription fac 61.4 11 0.00023 38.1 4.1 26 115-140 309-334 (655)
39 KOG4005 Transcription factor X 58.4 27 0.00058 32.0 5.7 35 115-149 97-131 (292)
40 PF04977 DivIC: Septum formati 57.9 20 0.00044 25.5 4.2 27 119-145 21-47 (80)
41 PF14645 Chibby: Chibby family 57.7 26 0.00056 28.2 5.1 37 119-155 68-104 (116)
42 PF01166 TSC22: TSC-22/dip/bun 57.3 18 0.00038 26.0 3.6 21 115-135 21-41 (59)
43 PRK14127 cell division protein 55.3 25 0.00054 28.1 4.6 33 116-148 31-63 (109)
44 cd00068 GGL G protein gamma su 55.0 19 0.00041 25.2 3.5 33 125-157 2-38 (57)
45 COG3074 Uncharacterized protei 54.9 33 0.00071 25.6 4.8 33 117-149 20-52 (79)
46 PF08172 CASP_C: CASP C termin 53.1 39 0.00084 30.7 6.0 40 117-156 95-137 (248)
47 KOG3119 Basic region leucine z 53.0 39 0.00084 30.9 6.1 17 122-138 229-245 (269)
48 PHA00728 hypothetical protein 52.9 16 0.00035 30.1 3.1 24 122-145 5-28 (151)
49 PRK13169 DNA replication intia 52.1 41 0.00089 26.9 5.4 25 119-143 26-50 (110)
50 PF04977 DivIC: Septum formati 51.6 81 0.0018 22.3 6.6 29 115-143 24-52 (80)
51 PF07412 Geminin: Geminin; In 50.2 36 0.00079 30.1 5.2 49 120-169 123-171 (200)
52 PF10224 DUF2205: Predicted co 50.1 78 0.0017 24.0 6.3 41 117-157 18-61 (80)
53 TIGR02894 DNA_bind_RsfA transc 48.7 77 0.0017 27.2 6.7 35 118-152 100-134 (161)
54 PRK10884 SH3 domain-containing 47.9 45 0.00097 29.4 5.4 30 119-148 129-158 (206)
55 PRK00888 ftsB cell division pr 47.8 52 0.0011 25.8 5.3 33 116-148 28-60 (105)
56 TIGR03752 conj_TIGR03752 integ 47.5 62 0.0013 32.2 6.8 34 115-148 66-99 (472)
57 PF14193 DUF4315: Domain of un 45.8 1.3E+02 0.0029 22.8 8.2 52 118-170 4-60 (83)
58 PF04728 LPP: Lipoprotein leuc 45.2 1.1E+02 0.0023 21.8 6.0 30 119-148 21-50 (56)
59 PF07716 bZIP_2: Basic region 44.9 39 0.00085 23.0 3.7 22 116-137 33-54 (54)
60 PRK14127 cell division protein 44.9 69 0.0015 25.6 5.6 32 115-146 37-68 (109)
61 PRK10884 SH3 domain-containing 44.9 80 0.0017 27.8 6.6 29 117-145 134-162 (206)
62 TIGR02449 conserved hypothetic 43.7 1E+02 0.0022 22.5 5.8 38 116-153 15-59 (65)
63 PF07989 Microtub_assoc: Micro 43.6 68 0.0015 23.8 5.1 31 118-148 39-69 (75)
64 PF06632 XRCC4: DNA double-str 43.4 61 0.0013 30.8 6.0 33 116-148 138-170 (342)
65 PF00631 G-gamma: GGL domain; 42.9 45 0.00097 23.9 3.9 31 123-153 3-37 (68)
66 cd07429 Cby_like Chibby, a nuc 42.7 68 0.0015 25.7 5.2 34 121-154 71-104 (108)
67 PF11577 NEMO: NF-kappa-B esse 42.6 91 0.002 22.9 5.5 36 116-154 7-42 (68)
68 PF05812 Herpes_BLRF2: Herpesv 42.4 42 0.0009 27.3 4.0 24 117-140 5-28 (118)
69 COG3074 Uncharacterized protei 42.3 95 0.0021 23.2 5.5 31 118-148 42-72 (79)
70 PRK10803 tol-pal system protei 42.1 69 0.0015 29.0 5.9 30 119-148 58-87 (263)
71 smart00224 GGL G protein gamma 41.6 32 0.00069 24.6 2.9 32 125-156 2-37 (63)
72 PRK15422 septal ring assembly 41.6 92 0.002 23.7 5.5 24 117-140 20-43 (79)
73 PRK13923 putative spore coat p 41.3 1E+02 0.0022 26.6 6.5 39 116-154 112-150 (170)
74 TIGR02209 ftsL_broad cell divi 40.3 56 0.0012 23.8 4.3 8 160-167 60-67 (85)
75 PF08227 DASH_Hsk3: DASH compl 39.8 1.2E+02 0.0026 20.6 5.7 39 116-155 3-41 (45)
76 PHA03155 hypothetical protein; 39.5 41 0.00089 27.2 3.5 24 117-140 10-33 (115)
77 PHA03162 hypothetical protein; 38.6 46 0.00099 27.7 3.7 22 118-139 16-37 (135)
78 PF15058 Speriolin_N: Sperioli 37.7 60 0.0013 28.7 4.5 26 117-142 7-32 (200)
79 PF05529 Bap31: B-cell recepto 36.7 68 0.0015 27.3 4.8 31 118-148 157-187 (192)
80 PF11853 DUF3373: Protein of u 36.6 29 0.00063 34.6 2.7 28 120-147 29-56 (489)
81 KOG4196 bZIP transcription fac 36.4 1.7E+02 0.0036 24.4 6.7 30 118-147 77-106 (135)
82 PF10224 DUF2205: Predicted co 36.0 1.3E+02 0.0029 22.7 5.7 34 117-150 32-65 (80)
83 COG4467 Regulator of replicati 35.8 92 0.002 25.1 4.9 24 117-140 31-54 (114)
84 PF05064 Nsp1_C: Nsp1-like C-t 35.1 1.1E+02 0.0025 24.2 5.5 41 115-155 57-97 (116)
85 PF11382 DUF3186: Protein of u 35.0 1.1E+02 0.0023 28.5 6.1 35 119-153 36-70 (308)
86 smart00340 HALZ homeobox assoc 34.9 1.1E+02 0.0024 20.7 4.4 27 117-143 7-33 (44)
87 PRK09413 IS2 repressor TnpA; R 34.5 91 0.002 24.6 4.9 26 118-143 74-99 (121)
88 PF11544 Spc42p: Spindle pole 33.7 1.6E+02 0.0034 22.2 5.6 35 121-155 4-38 (76)
89 TIGR00219 mreC rod shape-deter 33.4 1.4E+02 0.0029 27.5 6.5 28 120-147 64-91 (283)
90 PF04849 HAP1_N: HAP1 N-termin 32.2 1.4E+02 0.003 28.2 6.3 27 115-141 167-193 (306)
91 PF15369 KIAA1328: Uncharacter 32.1 1.5E+02 0.0032 28.3 6.4 46 117-162 35-83 (328)
92 PF04999 FtsL: Cell division p 32.0 89 0.0019 23.5 4.3 10 159-168 70-79 (97)
93 PF13863 DUF4200: Domain of un 31.9 2.1E+02 0.0046 22.2 6.6 39 118-156 77-118 (126)
94 PRK10803 tol-pal system protei 31.7 1E+02 0.0023 27.8 5.3 38 115-152 61-98 (263)
95 PF14916 CCDC92: Coiled-coil d 30.5 21 0.00046 25.7 0.5 32 117-148 5-40 (60)
96 PF05377 FlaC_arch: Flagella a 30.4 2E+02 0.0043 20.4 6.1 31 119-149 4-34 (55)
97 KOG3156 Uncharacterized membra 30.0 83 0.0018 28.2 4.2 21 123-143 117-137 (220)
98 PF04102 SlyX: SlyX; InterPro 30.0 2.1E+02 0.0046 20.5 5.8 32 117-148 13-44 (69)
99 PF12808 Mto2_bdg: Micro-tubul 29.9 1E+02 0.0023 21.5 3.9 23 120-142 27-49 (52)
100 PRK13922 rod shape-determining 29.9 1.8E+02 0.0039 26.0 6.5 30 119-148 66-95 (276)
101 KOG0977 Nuclear envelope prote 29.8 83 0.0018 31.9 4.7 30 115-144 162-191 (546)
102 KOG0930 Guanine nucleotide exc 29.6 1.6E+02 0.0035 27.9 6.2 54 118-171 27-104 (395)
103 PF10473 CENP-F_leu_zip: Leuci 28.8 2.3E+02 0.005 23.6 6.5 34 116-149 67-100 (140)
104 PF04420 CHD5: CHD5-like prote 28.7 2E+02 0.0043 24.1 6.2 14 140-153 70-83 (161)
105 PF03980 Nnf1: Nnf1 ; InterPr 28.7 1E+02 0.0022 23.8 4.1 29 115-143 80-108 (109)
106 PF15294 Leu_zip: Leucine zipp 28.5 1.2E+02 0.0027 28.1 5.3 32 118-149 128-159 (278)
107 KOG4571 Activating transcripti 28.1 1.9E+02 0.0041 27.1 6.4 39 117-155 250-288 (294)
108 PF06657 Cep57_MT_bd: Centroso 27.8 2.6E+02 0.0056 20.8 7.7 53 115-167 17-77 (79)
109 PF15058 Speriolin_N: Sperioli 27.7 81 0.0017 27.9 3.7 25 115-139 12-36 (200)
110 PF12325 TMF_TATA_bd: TATA ele 27.4 3.3E+02 0.0072 22.0 7.0 24 119-142 20-43 (120)
111 KOG4119 G protein gamma subuni 27.3 1.8E+02 0.0039 21.6 4.9 33 124-156 9-41 (71)
112 PF04508 Pox_A_type_inc: Viral 27.1 82 0.0018 18.5 2.5 19 123-141 2-20 (23)
113 PF10458 Val_tRNA-synt_C: Valy 27.1 1.5E+02 0.0032 21.0 4.5 24 120-143 2-25 (66)
114 PF02149 KA1: Kinase associate 26.9 13 0.00028 25.2 -1.1 17 36-52 17-35 (47)
115 PF09755 DUF2046: Uncharacteri 26.6 3.2E+02 0.0069 25.8 7.7 19 116-134 28-46 (310)
116 KOG3863 bZIP transcription fac 26.3 1.2E+02 0.0027 31.1 5.2 41 116-156 512-559 (604)
117 PF11382 DUF3186: Protein of u 26.2 1.8E+02 0.0038 27.0 6.0 39 115-153 39-77 (308)
118 COG3159 Uncharacterized protei 26.1 1.8E+02 0.0039 26.1 5.7 76 49-157 12-87 (218)
119 PRK15422 septal ring assembly 25.9 3E+02 0.0065 20.9 6.1 16 117-132 27-42 (79)
120 PF04728 LPP: Lipoprotein leuc 25.7 2.5E+02 0.0054 19.9 5.7 26 117-142 12-37 (56)
121 PF10506 MCC-bdg_PDZ: PDZ doma 25.6 2.7E+02 0.0059 20.3 5.8 36 120-155 3-38 (67)
122 COG2433 Uncharacterized conser 25.4 1.9E+02 0.0041 29.9 6.3 24 119-142 440-463 (652)
123 PF07407 Seadorna_VP6: Seadorn 25.3 95 0.0021 29.8 3.9 22 118-139 42-63 (420)
124 PF04129 Vps52: Vps52 / Sac2 f 25.2 3E+02 0.0064 27.3 7.7 53 116-169 43-95 (508)
125 PF08961 DUF1875: Domain of un 25.1 24 0.00052 31.8 0.0 27 117-143 138-164 (243)
126 KOG0837 Transcriptional activa 25.0 1.7E+02 0.0036 27.2 5.4 42 116-157 228-269 (279)
127 COG4467 Regulator of replicati 24.8 96 0.0021 25.0 3.4 33 115-147 22-54 (114)
128 PF03904 DUF334: Domain of unk 24.0 92 0.002 28.2 3.5 24 121-144 42-65 (230)
129 PF06305 DUF1049: Protein of u 24.0 1.1E+02 0.0024 21.3 3.3 22 125-146 44-65 (68)
130 KOG4343 bZIP transcription fac 23.6 1.4E+02 0.003 30.5 4.9 32 117-148 304-335 (655)
131 KOG2196 Nuclear porin [Nuclear 23.3 2.7E+02 0.0059 25.5 6.3 41 115-155 113-153 (254)
132 PF14645 Chibby: Chibby family 23.2 1.5E+02 0.0032 23.8 4.2 24 117-140 73-96 (116)
133 PF11221 Med21: Subunit 21 of 23.0 2.1E+02 0.0046 23.4 5.3 33 122-154 104-136 (144)
134 TIGR02209 ftsL_broad cell divi 22.9 2.7E+02 0.006 20.0 5.4 28 115-142 31-58 (85)
135 PF13118 DUF3972: Protein of u 22.6 3.4E+02 0.0074 22.3 6.3 39 117-155 80-121 (126)
136 PF09006 Surfac_D-trimer: Lung 22.3 2.5E+02 0.0055 19.2 4.5 16 120-135 4-19 (46)
137 PF07989 Microtub_assoc: Micro 22.1 1.9E+02 0.0041 21.4 4.3 26 119-144 4-29 (75)
138 PF12325 TMF_TATA_bd: TATA ele 21.9 2.6E+02 0.0056 22.6 5.4 34 115-148 30-63 (120)
139 PF14077 WD40_alt: Alternative 21.9 1.1E+02 0.0024 21.0 2.7 16 117-132 20-35 (48)
140 PRK10722 hypothetical protein; 21.8 2.3E+02 0.0049 25.9 5.5 28 121-148 175-202 (247)
141 PF04420 CHD5: CHD5-like prote 21.7 2E+02 0.0044 24.0 5.0 42 115-156 66-107 (161)
142 PF07106 TBPIP: Tat binding pr 21.6 1.5E+02 0.0033 24.6 4.2 28 116-143 80-107 (169)
143 PF14775 NYD-SP28_assoc: Sperm 21.1 3.1E+02 0.0067 19.4 5.4 27 129-155 33-59 (60)
144 PRK10265 chaperone-modulator p 21.1 1.3E+02 0.0027 23.3 3.4 25 116-140 72-96 (101)
145 PF05103 DivIVA: DivIVA protei 21.0 63 0.0014 25.3 1.7 30 115-144 25-54 (131)
146 COG2919 Septum formation initi 21.0 1.5E+02 0.0031 23.6 3.8 28 117-144 59-86 (117)
147 PF13870 DUF4201: Domain of un 21.0 3.5E+02 0.0075 22.6 6.3 38 117-154 44-81 (177)
148 PF01763 Herpes_UL6: Herpesvir 20.8 2.1E+02 0.0045 29.2 5.6 33 115-147 370-402 (557)
149 KOG2070 Guanine nucleotide exc 20.4 3.3E+02 0.0071 27.8 6.7 40 117-156 618-657 (661)
150 PF07558 Shugoshin_N: Shugoshi 20.2 1.4E+02 0.0029 20.1 2.9 24 116-139 22-45 (46)
151 PF04880 NUDE_C: NUDE protein, 20.2 49 0.0011 28.4 0.9 23 117-139 26-48 (166)
152 PF13815 Dzip-like_N: Iguana/D 20.1 3E+02 0.0065 21.7 5.5 23 125-147 76-98 (118)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=99.95 E-value=1.5e-28 Score=224.05 Aligned_cols=74 Identities=55% Similarity=0.859 Sum_probs=70.9
Q ss_pred CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc--CccceeecCCccCCchhhhccccccCCCCCC
Q 026263 3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV--ADKWEFANENFRRGHRELLTEIRRRKTATGP 76 (241)
Q Consensus 3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~--~~~~ef~h~~F~rg~~~lL~~I~Rkk~~~~~ 76 (241)
-+.||||||+.+|++++||+||||+||+|||||||+|||+||. ++.|||+|++|+||+++||++|+||++....
T Consensus 37 ~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~ 112 (304)
T KOG0627|consen 37 SGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRI 112 (304)
T ss_pred CCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCC
Confidence 4789999999999999999999999999999999999999999 9999999999999999999999999997654
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=99.91 E-value=1.4e-25 Score=175.31 Aligned_cols=70 Identities=53% Similarity=0.947 Sum_probs=58.3
Q ss_pred CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCcccccCc---------cceeecCCccCCchhhhccccccCC
Q 026263 3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAD---------KWEFANENFRRGHRELLTEIRRRKT 72 (241)
Q Consensus 3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~~~---------~~ef~h~~F~rg~~~lL~~I~Rkk~ 72 (241)
-+.+|||+|+.+|+++|||+||+|+||+||+||||+|||+|+..+ .|+|+||+|+||+|++|..|+|+++
T Consensus 24 ~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 24 DGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp TSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred CCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence 467999999999999999999999999999999999999999863 2999999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=99.90 E-value=8.1e-25 Score=172.09 Aligned_cols=69 Identities=58% Similarity=0.952 Sum_probs=65.6
Q ss_pred CCCCcEEEecchhhhhhhhccccCCCCccchhhhccccCcccccC-----------ccceeecCCccCCchhhhcccccc
Q 026263 2 KVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHRELLTEIRRR 70 (241)
Q Consensus 2 ~~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~~-----------~~~ef~h~~F~rg~~~lL~~I~Rk 70 (241)
..+.+|+|+|++.|.+.|||+||+|++|+||+||||+|||+|+.. +.|+|+||+|+||+|+||..|+||
T Consensus 26 ~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 26 PSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence 347899999999999999999999999999999999999999986 689999999999999999999996
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.86 E-value=1.3e-22 Score=184.27 Aligned_cols=74 Identities=46% Similarity=0.787 Sum_probs=68.0
Q ss_pred CCCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc-C---------ccceeecCCccCCchhhhccccccC
Q 026263 2 KVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-A---------DKWEFANENFRRGHRELLTEIRRRK 71 (241)
Q Consensus 2 ~~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~-~---------~~~ef~h~~F~rg~~~lL~~I~Rkk 71 (241)
.-+.||||||+++|.+.|||+||||+||+|||||||+|||+||. . +.|||.|++|++|..++|++|+|+|
T Consensus 34 ~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~k 113 (282)
T COG5169 34 PDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKK 113 (282)
T ss_pred CCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhh
Confidence 45789999999999999999999999999999999999999998 2 2599999999999999999999987
Q ss_pred CCCC
Q 026263 72 TATG 75 (241)
Q Consensus 72 ~~~~ 75 (241)
..+.
T Consensus 114 a~~~ 117 (282)
T COG5169 114 APSN 117 (282)
T ss_pred cCcc
Confidence 7543
No 5
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=86.78 E-value=0.87 Score=43.11 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=25.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
++..+|.+||.+||+||..|+.|+++++.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999998753
No 6
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.61 E-value=3.2 Score=28.02 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=15.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.+..|..+++.|.+||+.|..|+..++
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655555444
No 7
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=83.23 E-value=5.7 Score=28.14 Aligned_cols=37 Identities=11% Similarity=0.409 Sum_probs=31.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITF 151 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~F 151 (241)
+.+..|+..+..++++|+.|..++..+++.+.+|+..
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888889999999999999999999888777654
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.13 E-value=5.4 Score=29.54 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHhHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRD 130 (241)
Q Consensus 117 ~a~L~~Ene~Lkre 130 (241)
++.|..||+.|+.+
T Consensus 20 i~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 20 IALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 9
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=81.36 E-value=5.9 Score=34.71 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=34.0
Q ss_pred ecCCccCCchhhhccccccCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCchhhhhHHhHHHHHHHHHHHH
Q 026263 52 ANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDN 131 (241)
Q Consensus 52 ~h~~F~rg~~~lL~~I~Rkk~~~~~~~q~~~~~~~~~~~~~~~d~~~~~~~s~~~~~~~~ve~~~~a~L~~Ene~Lkren 131 (241)
.||.|-..+|+||..|+=. ++ . + +. . ++..-|+..|.++|+.|+.++
T Consensus 17 ~~PdFf~~~~~ll~~l~~p-----h~--~-~--~a------------v-----------SL~erQ~~~LR~~~~~L~~~l 63 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLP-----HP--S-G--GA------------V-----------SLVERQLERLRERNRQLEEQL 63 (225)
T ss_dssp ----------------------------------H------------H-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCC-----CC--C-C--Cc------------c-----------cHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999987631 11 0 0 00 0 011146667778888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHH
Q 026263 132 ETLSSELAQAKKQCDELITFLTEYVK-VGPDQINRI 166 (241)
Q Consensus 132 ~~L~~EL~~~kk~~~~Li~FL~~~v~-~~p~~l~~l 166 (241)
+.|...-.+-.+..+++-.+....++ .+.+.+-..
T Consensus 64 ~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~ 99 (225)
T PF04340_consen 64 EELIENARENEAIFQRLHRLVLALLAARSLQELLQA 99 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 77776666556666666666666665 234443333
No 10
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=80.66 E-value=5.5 Score=32.95 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
+.|..|+++|+.||..+..|+...+..|+.|..|..
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346666777777777777777777777777776664
No 11
>smart00338 BRLZ basic region leucin zipper.
Probab=78.49 E-value=6 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
+..|..+++.|..+|..|..++..++..+..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666655544
No 12
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.03 E-value=11 Score=26.52 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=24.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
.+..|..++..|..+|..|..++..++..+..|-
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888887777777777766653
No 13
>smart00338 BRLZ basic region leucin zipper.
Probab=77.08 E-value=11 Score=26.61 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..+..|..+|+.|+.++..|..|+..++.++
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999888765
No 14
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=76.51 E-value=9.4 Score=29.47 Aligned_cols=38 Identities=34% Similarity=0.607 Sum_probs=28.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
..+..|..++..|.+||..|..++...+.--++||..|
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667788888888888888888887777667776554
No 15
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=73.74 E-value=9.3 Score=29.46 Aligned_cols=30 Identities=37% Similarity=0.489 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~ 146 (241)
...+..+|++|..||+.|..|.+..+.+++
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999887766553
No 16
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.44 E-value=13 Score=26.16 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=23.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
..+..|..+|..|+.++..|..++..++..
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888888888888777654
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.65 E-value=13 Score=29.53 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=7.2
Q ss_pred hHHHHHhcCC
Q 026263 161 DQINRIMGQG 170 (241)
Q Consensus 161 ~~l~~l~~~g 170 (241)
+-|.+|+..|
T Consensus 76 ~NL~~LY~EG 85 (107)
T PF06156_consen 76 DNLARLYQEG 85 (107)
T ss_pred HHHHHHHhcC
Confidence 4577888777
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=70.23 E-value=7.8 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
|...+..|-.||..|.-|..+++.
T Consensus 27 LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 27 LKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 19
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.94 E-value=25 Score=23.66 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=27.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.+..|....+.|+.++..|.+|...++.++..|
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999888888776654
No 20
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=69.33 E-value=11 Score=23.82 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..|..|.+.|++..+.|...|++++..|
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578889999999999999998887654
No 21
>smart00340 HALZ homeobox associated leucin zipper.
Probab=68.29 E-value=7.6 Score=26.17 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=8.7
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLS 135 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~ 135 (241)
..|.+||.+|++|.+.|+
T Consensus 15 e~LteeNrRL~ke~~eLr 32 (44)
T smart00340 15 ESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555544443
No 22
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.92 E-value=32 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 122 DENAKLRRDNETLSSELAQAKKQCDELIT 150 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL~~~kk~~~~Li~ 150 (241)
++++.|+.+|..|.++....+..++.|+.
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 23
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=67.74 E-value=14 Score=33.25 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=22.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.+.++.+||++|++|+..|..++.+++.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~ 97 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQ 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999888886543
No 24
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.62 E-value=10 Score=29.90 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=19.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.+++.+..+|++|+.+|..|..|+..++.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44566677777777777777777776654
No 25
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.49 E-value=14 Score=36.64 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=14.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSEL 138 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL 138 (241)
.+++.|..+|++|+.||+.|++..
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666665533
No 26
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=67.19 E-value=19 Score=30.85 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
|..+|+.|..++..|.+++..++.-|..|+..|
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 27
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=66.14 E-value=29 Score=31.32 Aligned_cols=51 Identities=29% Similarity=0.389 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcChhHHHHHhcCC
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC---DELITFLTEYVKVGPDQINRIMGQG 170 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~---~~Li~FL~~~v~~~p~~l~~l~~~g 170 (241)
..+..||+.|+.....|..++.++++++ ++|-..|.+++ .++||..+...|
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~F--s~~Qi~~lk~~~ 67 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIF--SEDQIRNLKNGG 67 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHhcCC
Confidence 4567788888888888888888877765 56666666665 477887665443
No 28
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=65.84 E-value=12 Score=28.12 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
..|.+||.+|+++.+.|..||.++++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999888887665
No 29
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.58 E-value=42 Score=24.52 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=22.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELIT 150 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~ 150 (241)
.++..|-...++|+.||..|.+++...+.--..|+.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777665544444433
No 30
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=65.45 E-value=13 Score=35.38 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=24.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
..+.+|.+||++|++||..|..++.+.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~ 85 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEE 85 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998887653
No 31
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.63 E-value=12 Score=30.08 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=7.7
Q ss_pred hHHHHHhcCC
Q 026263 161 DQINRIMGQG 170 (241)
Q Consensus 161 ~~l~~l~~~g 170 (241)
+.|.+|...|
T Consensus 73 ~NL~~LY~EG 82 (110)
T PRK13169 73 DNLARLYQEG 82 (110)
T ss_pred HHHHHHHHcC
Confidence 4688888877
No 32
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=63.59 E-value=18 Score=24.70 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
..+|..++..|..+|..|..++..+++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888888887777654
No 33
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=62.81 E-value=23 Score=32.44 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
+.+|.+||++|++++..|..++..
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888877666654
No 34
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=62.69 E-value=18 Score=33.73 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
..|+.+|++||.+...|-+|+..+|+.
T Consensus 258 ~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 258 EGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444443
No 35
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=62.69 E-value=13 Score=33.95 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 157 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~ 157 (241)
.+......|.+||+.|+.++.++++...++-..+..+.+
T Consensus 219 e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 219 EMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666677778888888888777777776666655553
No 36
>PRK10963 hypothetical protein; Provisional
Probab=62.19 E-value=56 Score=28.77 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred ecCCccCCchhhhccccccCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCchhhhhHHhHHHHHHHHHHHH
Q 026263 52 ANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDN 131 (241)
Q Consensus 52 ~h~~F~rg~~~lL~~I~Rkk~~~~~~~q~~~~~~~~~~~~~~~d~~~~~~~s~~~~~~~~ve~~~~a~L~~Ene~Lkren 131 (241)
.||.|--.+|+||..|+=.-+. + + .. | -+| -|+..|.++|..|+.+.
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~--------~--g------------aV---S-------L~E-rQ~~~LR~r~~~Le~~l 60 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPV--------R--G------------TV---S-------LVE-WQMARQRNHIHVLEEEM 60 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCC--------C--C------------ee---c-------HHH-HHHHHHHHHHHHHHHHH
Confidence 6999999999999866431110 0 0 00 0 022 45566777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026263 132 ETLSSELAQAKKQCDELITFLTEYVK 157 (241)
Q Consensus 132 ~~L~~EL~~~kk~~~~Li~FL~~~v~ 157 (241)
..|..--.+-.+..+++-......+.
T Consensus 61 ~~Li~~A~~Ne~l~~~~~~l~l~Ll~ 86 (223)
T PRK10963 61 TLLMEQAIANEDLFYRLLPLQSRLAA 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77765554444445555444444443
No 37
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.98 E-value=15 Score=27.00 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=19.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.++.....++.+|+.++..|.+|+...+
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667777777777777777766544
No 38
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=61.40 E-value=11 Score=38.14 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=21.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
..+.+|..||+.||+||.+|+++|..
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~ 334 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDE 334 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44567888999999999999999875
No 39
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=58.38 E-value=27 Score=31.98 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=22.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
.++.+|.+||++|+.||+.|+..-..+-.+.+++.
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~ 131 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELD 131 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45667888888888888888765554433334443
No 40
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.94 E-value=20 Score=25.53 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
.+..++..|++++..|..+...+++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 41
>PF14645 Chibby: Chibby family
Probab=57.66 E-value=26 Score=28.22 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
....++.+|+++|..|+.|..-++-+++=|+..|+..
T Consensus 68 ~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 68 ADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888743
No 42
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=57.33 E-value=18 Score=26.02 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=10.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLS 135 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~ 135 (241)
.++++|.++|.+|..||..|+
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 43
>PRK14127 cell division protein GpsB; Provisional
Probab=55.35 E-value=25 Score=28.13 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=20.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.+..+.++++.|.+++..|..|+.+++..+.++
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666655554
No 44
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=54.97 E-value=19 Score=25.21 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Q 026263 125 AKLRRDNETLSSELAQAK----KQCDELITFLTEYVK 157 (241)
Q Consensus 125 e~Lkren~~L~~EL~~~k----k~~~~Li~FL~~~v~ 157 (241)
+.++++++.|+.|+..-+ +-+..|+.|..++..
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~ 38 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAE 38 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 456777777777776544 446777777777654
No 45
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.87 E-value=33 Score=25.65 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
++-|.-|++.|+..|..|.+|...++...+.|-
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 455778888999999988888887666555543
No 46
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=53.11 E-value=39 Score=30.65 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDEL---ITFLTEYV 156 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L---i~FL~~~v 156 (241)
...|++|+.++..++..|++|+..++.---+| |.||+.|-
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 45678888888888888888888877533333 46676664
No 47
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=53.00 E-value=39 Score=30.86 Aligned_cols=17 Identities=47% Similarity=0.591 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026263 122 DENAKLRRDNETLSSEL 138 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL 138 (241)
.||+.|+.++.+|.+|+
T Consensus 229 ken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 229 KENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 48
>PHA00728 hypothetical protein
Probab=52.88 E-value=16 Score=30.12 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 122 DENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
.|+++|++||..|++.|+.+...+
T Consensus 5 teveql~keneelkkkla~leal~ 28 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALM 28 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578889999999988888776654
No 49
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=52.05 E-value=41 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.|..++..|-.||..|.-|..++++
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 50
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.64 E-value=81 Score=22.30 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=19.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.+++.|..++++|+.+|..|..++..++.
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566777777777777777777777643
No 51
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=50.18 E-value=36 Score=30.08 Aligned_cols=49 Identities=35% Similarity=0.470 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcC
Q 026263 120 LSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQ 169 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~~~p~~l~~l~~~ 169 (241)
--+||++|.++...|..|+..++....+|.. |..+++.-.+.|.+|++.
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L~e-lae~~~~la~~ie~l~~~ 171 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEELKE-LAEHVQYLAEVIERLTGQ 171 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 3469999999999999999998876655543 233332223456677653
No 52
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=50.09 E-value=78 Score=23.98 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=30.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELI---TFLTEYVK 157 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li---~FL~~~v~ 157 (241)
-+.|..+...|+.....|+..+...+.-+++|- .||..|++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888887777764 46666653
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.73 E-value=77 Score=27.17 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
..+..||++|+.++..|.+++..+++....|..-+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666555555554433
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.85 E-value=45 Score=29.40 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.....+..|+.+|+.|.+|++.++...+.+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666655555444
No 55
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=47.80 E-value=52 Score=25.84 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.+..+..+++.++.+|+.|.++...++..++.|
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888889898888888888888877654
No 56
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.45 E-value=62 Score=32.20 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=28.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.++..+..+++.|.++|+.|..|..+++++.+.|
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSI 99 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6677889999999999999999999998754333
No 57
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=45.84 E-value=1.3e+02 Score=22.84 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhcChhHHHHHhcCC
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC-----DELITFLTEYVKVGPDQINRIMGQG 170 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~-----~~Li~FL~~~v~~~p~~l~~l~~~g 170 (241)
..|..|+++.+.....+...|-.+..+. -+|+.. .+-++..|++|..++..+
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~-VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQM-VRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 4566777777777777766665544433 334443 366667899999999765
No 58
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.22 E-value=1.1e+02 Score=21.81 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.|+.++..|+-+......|.++.-++++.+
T Consensus 21 qLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 21 QLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444455544
No 59
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=44.93 E-value=39 Score=23.02 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=12.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSE 137 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~E 137 (241)
.+..|..+|..|..++..|..|
T Consensus 33 ~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 33 EVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566666666666655543
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=44.92 E-value=69 Score=25.61 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=27.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~ 146 (241)
..+..|..||..|+.++..|..++..++.+..
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678999999999999999999999888664
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.91 E-value=80 Score=27.81 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..+|.++|++|+.++..+..|+..++.+.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666665544443
No 62
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.66 E-value=1e+02 Score=22.51 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=22.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSEL-------AQAKKQCDELITFLT 153 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL-------~~~kk~~~~Li~FL~ 153 (241)
.+..|..||..|+.+...+..|- ..++.+++.||.-|.
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666666666665555554 445566677766653
No 63
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=43.65 E-value=68 Score=23.82 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.++..+|-.|+-++..|.+|+...++.+.++
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888877777665543
No 64
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=43.39 E-value=61 Score=30.81 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=21.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
....|..++..|.++|..|.++..++..+++++
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777776665554443
No 65
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=42.89 E-value=45 Score=23.86 Aligned_cols=31 Identities=39% Similarity=0.713 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 026263 123 ENAKLRRDNETLSSELAQAK----KQCDELITFLT 153 (241)
Q Consensus 123 Ene~Lkren~~L~~EL~~~k----k~~~~Li~FL~ 153 (241)
+..+|+++++.|+.||..-+ +-+.+|+.|..
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~ 37 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIKVSKACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc
Confidence 45566777777777766533 34666666665
No 66
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=42.73 E-value=68 Score=25.69 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFLTE 154 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~ 154 (241)
..|..+|+++|..|..|-.-+|=+++=|+.-|+.
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666653
No 67
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=42.64 E-value=91 Score=22.89 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=23.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 154 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~ 154 (241)
++..|-.||..|+ .+|.+--..|+.+|+.|..|=-.
T Consensus 7 ~l~~LL~EN~~LK---ealrQ~N~~Mker~e~l~~wqe~ 42 (68)
T PF11577_consen 7 QLQELLQENQDLK---EALRQNNQAMKERFEELLAWQEK 42 (68)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777887776 45555556677777777655433
No 68
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=42.38 E-value=42 Score=27.34 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
+.+|..|+.+|+-||..|++.+-+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457889999999999999988854
No 69
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.32 E-value=95 Score=23.24 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.++...++.|.++|..|.+|...-+..+.-|
T Consensus 42 q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 42 QNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777776666554444333
No 70
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.09 E-value=69 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
+|..+++.|+.|+..|+-+++.+..++++|
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444455555555555544444444444333
No 71
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=41.59 E-value=32 Score=24.55 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Q 026263 125 AKLRRDNETLSSELAQAK----KQCDELITFLTEYV 156 (241)
Q Consensus 125 e~Lkren~~L~~EL~~~k----k~~~~Li~FL~~~v 156 (241)
+.++++++.|+.|+..-+ +-+..|+.|..++.
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~ 37 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHA 37 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCC
Confidence 456777777777776544 34666666666543
No 72
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.55 E-value=92 Score=23.65 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
++-|..|++.|+.+|..|.+|...
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777776554
No 73
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=41.28 E-value=1e+02 Score=26.59 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=30.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 154 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~ 154 (241)
.+..|..+|+.|..++..|.+++...+.-+..|+..+-+
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888878777766643
No 74
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.35 E-value=56 Score=23.78 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=3.7
Q ss_pred hhHHHHHh
Q 026263 160 PDQINRIM 167 (241)
Q Consensus 160 p~~l~~l~ 167 (241)
|+-+.++.
T Consensus 60 ~~rIe~~A 67 (85)
T TIGR02209 60 HERIEKIA 67 (85)
T ss_pred HHHHHHHH
Confidence 44444443
No 75
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=39.85 E-value=1.2e+02 Score=20.58 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
+++.|..+++.|..-...+...|.-+-.|| ++|.+|-.+
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~~LG~~ 41 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQA-NSIRKLGKI 41 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 467788888888888888888888888888 677777544
No 76
>PHA03155 hypothetical protein; Provisional
Probab=39.54 E-value=41 Score=27.24 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
+.+|..|+.+|+-||..|++.|-+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357889999999999999999854
No 77
>PHA03162 hypothetical protein; Provisional
Probab=38.56 E-value=46 Score=27.67 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~ 139 (241)
.+|..|+.+|+-||..|++.+-
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998884
No 78
>PF15058 Speriolin_N: Speriolin N terminus
Probab=37.69 E-value=60 Score=28.69 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
+..|.++|++|-+||+.|++.+.-++
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44566666777666666666555444
No 79
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.66 E-value=68 Score=27.27 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
..+.+|+++|+++......++..+++|.+.+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777776654
No 80
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.56 E-value=29 Score=34.62 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
+.+++++|++|.+.|++++..+++++++
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccch
Confidence 3447777777777777777666655544
No 81
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=36.38 E-value=1.7e+02 Score=24.38 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
..|+.++..|+.+...|..|+++++...+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666654443
No 82
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.03 E-value=1.3e+02 Score=22.70 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELIT 150 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~ 150 (241)
+.+|.+.++..+.|+..|.+|-.-+++-++.|+.
T Consensus 32 L~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 32 LEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666544
No 83
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=35.83 E-value=92 Score=25.12 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=13.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
++.|.+||-.|+-||..|+..|..
T Consensus 31 l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 31 LGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHhhHHHHhhHHHHHHHhCC
Confidence 344555555555555555555544
No 84
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=35.11 E-value=1.1e+02 Score=24.18 Aligned_cols=41 Identities=27% Similarity=0.300 Sum_probs=31.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
..+..|..++.++......|-++|..+..++++|-.+|..|
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~l 97 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPL 97 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888877766543
No 85
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=34.98 E-value=1.1e+02 Score=28.50 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
.|.++.+.|+++|..|..|+..++.+.+..=.|+.
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~ 70 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIA 70 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444444443
No 86
>smart00340 HALZ homeobox associated leucin zipper.
Probab=34.89 E-value=1.1e+02 Score=20.67 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
+.-|..=-+.|..||..|.+|++.++.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777788888888888888887764
No 87
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.50 E-value=91 Score=24.58 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
..+.+|+.+|++++..|..|..-+++
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888887776555
No 88
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=33.69 E-value=1.6e+02 Score=22.24 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
-++|..|+.....-..|+.++...+..|=.-|.+|
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKY 38 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKY 38 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443334333
No 89
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.40 E-value=1.4e+02 Score=27.45 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
--.+...|+.||+.|++|+.+++++.+.
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777899999999999887555444
No 90
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.18 E-value=1.4e+02 Score=28.18 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=17.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQA 141 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~ 141 (241)
.++..|.+||..|+.|-..|..+-...
T Consensus 167 ~Klk~LEeEN~~LR~Ea~~L~~et~~~ 193 (306)
T PF04849_consen 167 EKLKSLEEENEQLRSEASQLKTETDTY 193 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 445566777777777777776555543
No 91
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=32.11 E-value=1.5e+02 Score=28.27 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcChhH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQ---CDELITFLTEYVKVGPDQ 162 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~---~~~Li~FL~~~v~~~p~~ 162 (241)
...++..+..|..+|..+.+|-..++.+ |++|+..-.+|+..+...
T Consensus 35 ~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~k 83 (328)
T PF15369_consen 35 QESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEK 83 (328)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888998888888776654 789999988998644433
No 92
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.97 E-value=89 Score=23.51 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=4.9
Q ss_pred ChhHHHHHhc
Q 026263 159 GPDQINRIMG 168 (241)
Q Consensus 159 ~p~~l~~l~~ 168 (241)
+|+.|.++..
T Consensus 70 ~~~rIe~iA~ 79 (97)
T PF04999_consen 70 SPSRIERIAR 79 (97)
T ss_pred CHHHHHHHHH
Confidence 3555555543
No 93
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.88 E-value=2.1e+02 Score=22.21 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELI---TFLTEYV 156 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li---~FL~~~v 156 (241)
.....++..|..+...|..+...+...++... .||.+++
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~ 118 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVV 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777777777776655443 4444444
No 94
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.69 E-value=1e+02 Score=27.84 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=29.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
.++.+|..|+.+|+=+++.+.-+|.+++++..++..=|
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888887777764444
No 95
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=30.47 E-value=21 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNET----LSSELAQAKKQCDEL 148 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~----L~~EL~~~kk~~~~L 148 (241)
+..+..-+.-|+.+... |-.|+.++++.|.+|
T Consensus 5 v~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL 40 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDL 40 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34455555555555544 334445556656554
No 96
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.36 E-value=2e+02 Score=20.36 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
.|+.++.+|.-...+++.|+..++..+++|=
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444443
No 97
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.01 E-value=83 Score=28.21 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026263 123 ENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 123 Ene~Lkren~~L~~EL~~~kk 143 (241)
|...|+.||+.|..++.+.|.
T Consensus 117 EF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 117 EFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554
No 98
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.98 E-value=2.1e+02 Score=20.54 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
++-+.+-++.|.......++++..+++++..|
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444443
No 99
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.90 E-value=1e+02 Score=21.50 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~k 142 (241)
...++..|..||..|..+|...+
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777776554
No 100
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.86 E-value=1.8e+02 Score=26.04 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
+.-....+|+.||..|++|+++++.+..++
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577888999999999998888776654
No 101
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=29.79 E-value=83 Score=31.90 Aligned_cols=30 Identities=40% Similarity=0.593 Sum_probs=25.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
.....|.+|+..|+++|..|+.+|..++++
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445788999999999999999999988864
No 102
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.58 E-value=1.6e+02 Score=27.86 Aligned_cols=54 Identities=26% Similarity=0.446 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--------HHH--------------HHHHHHHHHH--HhhcChhHHHHHhcCCC
Q 026263 118 ADLSDENAKLRRDNETLSSELAQA--------KKQ--------------CDELITFLTE--YVKVGPDQINRIMGQGS 171 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~--------kk~--------------~~~Li~FL~~--~v~~~p~~l~~l~~~g~ 171 (241)
+.|-+|+++|+.|......|+... ++. ..+-|+||.. ++...|+.|.+.+..|.
T Consensus 27 ~qL~deIq~Lk~Ei~ev~~eid~~~~~e~skt~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGE 104 (395)
T KOG0930|consen 27 QELLDEIQRLKDEIAEVMEEIDNLESTEESKTKQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGE 104 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcC
Confidence 568889999999998888888532 111 1344777773 56678999999998774
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=28.82 E-value=2.3e+02 Score=23.59 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=23.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
.+..|..|...|+.++..|.+++..++.++..|=
T Consensus 67 el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777766553
No 104
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.73 E-value=2e+02 Score=24.06 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 026263 140 QAKKQCDELITFLT 153 (241)
Q Consensus 140 ~~kk~~~~Li~FL~ 153 (241)
+.+++++++..-|.
T Consensus 70 Kl~Rk~~kl~~el~ 83 (161)
T PF04420_consen 70 KLNRKLDKLEEELE 83 (161)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544444
No 105
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=28.67 E-value=1e+02 Score=23.85 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=22.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.....|...++.|..+|..|..++...++
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567888888888889888888887654
No 106
>PF15294 Leu_zip: Leucine zipper
Probab=28.51 E-value=1.2e+02 Score=28.07 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
+-|..|+.+|+.||..|+..+...++++...+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l 159 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSAL 159 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999988887777765544
No 107
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.07 E-value=1.9e+02 Score=27.10 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
..+|..|.+-|.++|..|+.++.++.+-+..|=++|...
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999887777666543
No 108
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=27.82 E-value=2.6e+02 Score=20.83 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=31.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHhhcChhHHHHHh
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAK-----KQCDEL---ITFLTEYVKVGPDQINRIM 167 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~k-----k~~~~L---i~FL~~~v~~~p~~l~~l~ 167 (241)
..+..|.+|...|+-+.+.|..++.++. ++...| |..|..-+..-.+||..|.
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466788888888888888866665432 222223 3334444444456666553
No 109
>PF15058 Speriolin_N: Speriolin N terminus
Probab=27.67 E-value=81 Score=27.90 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
.++..|..||++||+.+..|+..+.
T Consensus 12 hqierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 12 HQIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5677889999999999887765443
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.39 E-value=3.3e+02 Score=21.98 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.|+..+.++--|...|+.++.++.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 111
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=27.27 E-value=1.8e+02 Score=21.65 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026263 124 NAKLRRDNETLSSELAQAKKQCDELITFLTEYV 156 (241)
Q Consensus 124 ne~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v 156 (241)
+.++++.++.|+.|+.-.+..+.+...-|..|+
T Consensus 9 ~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~ 41 (71)
T KOG4119|consen 9 KPQMKKEVEQLKLEANIERIKVSKAAAELLEYC 41 (71)
T ss_pred hHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 445566666666666555544444433344443
No 112
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.11 E-value=82 Score=18.49 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026263 123 ENAKLRRDNETLSSELAQA 141 (241)
Q Consensus 123 Ene~Lkren~~L~~EL~~~ 141 (241)
|+++|+.....|.++|...
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777654
No 113
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.05 E-value=1.5e+02 Score=21.01 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
+..|..+|.++...|..++....+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665544
No 114
>PF02149 KA1: Kinase associated domain 1; InterPro: IPR001772 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. Members of the KIN2/PAR-1/MARK kinase subfamily are conserved from yeast to human and share the same domain organisation: an N-terminal kinase domain (IPR000719 from INTERPRO) and a C-terminal kinase associated domain 1 (KA1). Some members of the KIN1/PAR-1/MARK family also contain an UBA domain (IPR000449 from INTERPRO). Members of this kinase subfamily are involved in various biological processes such as cell polarity, cell cycle control, intracellular signalling, microtubule stability and protein stability []. The function of the KA1 domain is not yet known. Some proteins known to contain a KA1 domain are listed below: Mammalian MAP/microtubule affinity-regulating kinases (MARK 1,2,3). They regulate polarity in neuronal cell models and appear to function redundantly in phosphorylating MT-associated proteins and in regulating MT stability []. Mammalian maternal embryonic leucine zipper kinase (MELK). It phosphorylates ZNF622 and may contribute to its redirection to the nucleus. It may be involved in the inhibition of spliceosome assembly during mitosis. Caenorhabditis elegans and drosophila PAR-1 protein. It is required for establishing polarity in embryos where it is asymmetrically distributed []. Fungal Kin1 and Kin2 protein kinases involved in regulation of exocytosis. They localise to the cytoplasmic face of the plasma membrane []. Plant KIN10 and KIN11 proteins, catalytic subunits of the putative trimeric SNF1-related protein kinase (SnRK) complex. This entry represents the KA1 domain.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3OSE_A 1V5S_A 1UL7_A.
Probab=26.91 E-value=13 Score=25.21 Aligned_cols=17 Identities=41% Similarity=1.152 Sum_probs=12.8
Q ss_pred ccccC--cccccCccceee
Q 026263 36 LNTYG--FRKIVADKWEFA 52 (241)
Q Consensus 36 Ln~YG--F~Kv~~~~~ef~ 52 (241)
+++|| |+++..|.|.|.
T Consensus 17 ~~l~Gv~~kRi~Gd~~~yk 35 (47)
T PF02149_consen 17 LGLYGVDFKRISGDSWQYK 35 (47)
T ss_dssp CTCEEEEEEEEES-HHHHH
T ss_pred CCeeEEEEEEeeCCHHHHH
Confidence 56677 888999999885
No 115
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=26.64 E-value=3.2e+02 Score=25.84 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=8.9
Q ss_pred hHHhHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETL 134 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L 134 (241)
.++.|..+|..|+.++..+
T Consensus 28 ~~~sL~qen~~Lk~El~~e 46 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETE 46 (310)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3444555555544444333
No 116
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=26.26 E-value=1.2e+02 Score=31.05 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=23.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 026263 116 KFADLSDENAKLRRDNETLSSEL-------AQAKKQCDELITFLTEYV 156 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL-------~~~kk~~~~Li~FL~~~v 156 (241)
.+..|+.|++.|+++.+.|.+|- ..|++++..|-.-+-+++
T Consensus 512 ~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~l 559 (604)
T KOG3863|consen 512 CILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQL 559 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655555554 456666655555554444
No 117
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=26.22 E-value=1.8e+02 Score=27.01 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=31.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
.++..|.+|+++|+.++..|..++....+-...+..-|.
T Consensus 39 ~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv 77 (308)
T PF11382_consen 39 DQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLV 77 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999988776666554443
No 118
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.12 E-value=1.8e+02 Score=26.10 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=45.7
Q ss_pred ceeecCCccCCchhhhccccccCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCchhhhhHHhHHHHHHHHH
Q 026263 49 WEFANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLR 128 (241)
Q Consensus 49 ~ef~h~~F~rg~~~lL~~I~Rkk~~~~~~~q~~~~~~~~~~~~~~~d~~~~~~~s~~~~~~~~ve~~~~a~L~~Ene~Lk 128 (241)
|-+.||.|-+.+++|+..|.=..+.. + +. |. ++ -+++.+.+.|..|.
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~-------~---tV---------------SL-------ve-~ql~r~R~~~~~Le 58 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVA-------G---TV---------------SL-------VE-RQLARLRNRIRELE 58 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCC-------C---ee---------------eh-------HH-HHHHHHHHHHHHHH
Confidence 44679999999999999886532211 0 00 00 22 45666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026263 129 RDNETLSSELAQAKKQCDELITFLTEYVK 157 (241)
Q Consensus 129 ren~~L~~EL~~~kk~~~~Li~FL~~~v~ 157 (241)
.+.+.|...-..-.+...++.+.-.+.++
T Consensus 59 ~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~ 87 (218)
T COG3159 59 EELAALMENARANERLFYRLHALQLDLLD 87 (218)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 77777765544444555555555555554
No 119
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.86 E-value=3e+02 Score=20.92 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=7.8
Q ss_pred HHhHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNE 132 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~ 132 (241)
+..|.++|..|..++.
T Consensus 27 ieELKekn~~L~~e~~ 42 (79)
T PRK15422 27 IEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555433
No 120
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.72 E-value=2.5e+02 Score=19.94 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
+..|..++.+|..|...|+.++...+
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444433
No 121
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=25.57 E-value=2.7e+02 Score=20.34 Aligned_cols=36 Identities=39% Similarity=0.492 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
|...++.|+-.|..|..-+...+.++..|..-+-++
T Consensus 3 L~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~ 38 (67)
T PF10506_consen 3 LKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKY 38 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999998888888887666554
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.37 E-value=1.9e+02 Score=29.89 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.|..++++|++++.+|..+|.+++
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555443
No 123
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.26 E-value=95 Score=29.80 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=16.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~ 139 (241)
..|..||+.|+.+.+.|..|..
T Consensus 42 ~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5688888888888888866554
No 124
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=25.21 E-value=3e+02 Score=27.32 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=32.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcC
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQ 169 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~~~p~~l~~l~~~ 169 (241)
.+..++.|+..|+.+=..|...|..-+.....|=.|+...+ +.|+.++.|+..
T Consensus 43 ~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~-ipP~lI~~I~~~ 95 (508)
T PF04129_consen 43 DLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIV-IPPDLIRSICEG 95 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc-CCHHHHHhHhcC
Confidence 34455556666666655555555554444555555565554 788888888753
No 125
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=25.15 E-value=24 Score=31.85 Aligned_cols=27 Identities=41% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
+..|..||++|++||..|..|-+++.+
T Consensus 138 Ve~L~aeNErLr~EnkqL~ae~arL~k 164 (243)
T PF08961_consen 138 VEFLLAENERLRRENKQLKAENARLLK 164 (243)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999988754
No 126
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=24.99 E-value=1.7e+02 Score=27.16 Aligned_cols=42 Identities=31% Similarity=0.393 Sum_probs=28.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 157 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~ 157 (241)
.+..|++....|+-+|..|-.++..++++++++++-+..++.
T Consensus 228 risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 228 RISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666667777777777777777777777777666663
No 127
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=24.83 E-value=96 Score=25.01 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=26.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
.++.+|.+....|-.||..|+-|..++++...+
T Consensus 22 ~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 22 AELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 456677888888888888888888888887655
No 128
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.02 E-value=92 Score=28.17 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
.+|++.|+++|..+-+.+..++++
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~ 65 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEK 65 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 468899999999888888765543
No 129
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.99 E-value=1.1e+02 Score=21.27 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026263 125 AKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 125 e~Lkren~~L~~EL~~~kk~~~ 146 (241)
-+++++...+.+++.+++++.+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 130
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=23.63 E-value=1.4e+02 Score=30.46 Aligned_cols=32 Identities=38% Similarity=0.400 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
+..|+..+++|-.||+.|+.|-+.+|+++..+
T Consensus 304 ~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 304 MLGLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 35688899999999999999999999987555
No 131
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=23.32 E-value=2.7e+02 Score=25.52 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=31.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
.++..|..|...++.+...|-++|+-+-.++++|-.+|..+
T Consensus 113 ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~l 153 (254)
T KOG2196|consen 113 EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPL 153 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888888999999988888887877777544
No 132
>PF14645 Chibby: Chibby family
Probab=23.21 E-value=1.5e+02 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
...|.++|++|+.||..|+-++.-
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777766654
No 133
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.03 E-value=2.1e+02 Score=23.43 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 122 DENAKLRRDNETLSSELAQAKKQCDELITFLTE 154 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~ 154 (241)
..+.+|..||.....|+...-+.-++++.-+..
T Consensus 104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555544444444444433
No 134
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.89 E-value=2.7e+02 Score=20.02 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=19.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.+++++..++++|+.+|..|..|+..+.
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456677777777777777777776654
No 135
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=22.58 E-value=3.4e+02 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQC---DELITFLTEY 155 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~---~~Li~FL~~~ 155 (241)
+.+..+.++.|+.||..|+.-|..++..+ .+-|..|..-
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~q 121 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQ 121 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44556778899999999999999998888 4455555443
No 136
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=22.27 E-value=2.5e+02 Score=19.18 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLS 135 (241)
Q Consensus 120 L~~Ene~Lkren~~L~ 135 (241)
|.++++.|..+...|.
T Consensus 4 LrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 137
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.08 E-value=1.9e+02 Score=21.43 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
+....+++|++||-.|.-++.-+...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~ 29 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEER 29 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34566666777777766666555443
No 138
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.93 E-value=2.6e+02 Score=22.60 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=22.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
..++.+.+++.+|..+...|..|+..+-...+++
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777665554443
No 139
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=21.91 E-value=1.1e+02 Score=21.00 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNE 132 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~ 132 (241)
++.|++|...|++=|.
T Consensus 20 v~eLEeEV~~LrKINr 35 (48)
T PF14077_consen 20 VSELEEEVRTLRKINR 35 (48)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4556666666554443
No 140
>PRK10722 hypothetical protein; Provisional
Probab=21.75 E-value=2.3e+02 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
..++++|+.++..|..+|....++.+.|
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666665554
No 141
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.72 E-value=2e+02 Score=24.01 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=30.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYV 156 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v 156 (241)
.+.+.|..+.++|..|.+.+.+++...+..++.++..+.-.+
T Consensus 66 AkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (161)
T PF04420_consen 66 AKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVL 107 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888887777777666554433
No 142
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.64 E-value=1.5e+02 Score=24.62 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=18.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.+..|.+++..|+.++..|..||..+..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666777777777777766665543
No 143
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.14 E-value=3.1e+02 Score=19.39 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 129 RDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 129 ren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
.+...|.+|...++++-.+|-..|.+|
T Consensus 33 ~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 33 LDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444443
No 144
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=21.12 E-value=1.3e+02 Score=23.30 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=19.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
-+-+|-++++.|++++..|.+.|..
T Consensus 72 lvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 72 VALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999888876544
No 145
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=21.02 E-value=63 Score=25.31 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=22.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
..+..|..+++.|.+++..|..++..++..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~ 54 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQ 54 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556777888888888888888887765544
No 146
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=21.00 E-value=1.5e+02 Score=23.62 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
.+.+..|++.|..++..|..|+..++.-
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4456666666666666666666665544
No 147
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.96 E-value=3.5e+02 Score=22.58 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 154 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~ 154 (241)
|..|.-||..|......=..||..++..+...++-|+.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777666666677777788777666666654
No 148
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=20.79 E-value=2.1e+02 Score=29.17 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=25.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
.++.++-++++.|+.+|+.+..++..++.+...
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r 402 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSR 402 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888999999999988888777765444
No 149
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=20.39 E-value=3.3e+02 Score=27.79 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYV 156 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v 156 (241)
+-+|.+++..|+.||+.|.+.+..-++.-.+|-+.|.+++
T Consensus 618 vyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l 657 (661)
T KOG2070|consen 618 VYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKML 657 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457777777777777777777665555555544454444
No 150
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.23 E-value=1.4e+02 Score=20.10 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=12.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
.+..|..++..|..||..|+.++.
T Consensus 22 ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 22 KIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp --------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhc
Confidence 456778888888888888876653
No 151
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.20 E-value=49 Score=28.42 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=5.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
-..|..++++|+.|...|++|++
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl~ 48 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQELI 48 (166)
T ss_dssp HHHHHHCH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888884
No 152
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.15 E-value=3e+02 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026263 125 AKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 125 e~Lkren~~L~~EL~~~kk~~~~ 147 (241)
+.|-..+..|..++..+.+.+.+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~ 98 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEK 98 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333
Done!