Query 026263
Match_columns 241
No_of_seqs 245 out of 957
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ldu_A Heat shock factor prote 99.9 5.7E-29 1.9E-33 200.8 4.2 71 3-73 42-123 (125)
2 1hks_A Heat-shock transcriptio 99.9 3.5E-29 1.2E-33 196.5 2.8 68 3-70 29-106 (106)
3 3hts_B Heat shock transcriptio 99.8 2.9E-22 9.9E-27 156.4 2.0 53 3-55 37-100 (102)
4 2wt7_A Proto-oncogene protein 90.2 0.92 3.1E-05 31.5 6.4 39 116-154 24-62 (63)
5 1deb_A APC protein, adenomatou 85.7 1.9 6.6E-05 29.0 5.4 32 117-148 5-36 (54)
6 4dzn_A Coiled-coil peptide CC- 84.9 1.9 6.4E-05 25.9 4.5 28 116-143 3-30 (33)
7 1hjb_A Ccaat/enhancer binding 83.2 1.6 5.3E-05 32.6 4.6 36 118-153 39-74 (87)
8 1hjb_A Ccaat/enhancer binding 82.8 2.4 8.3E-05 31.5 5.5 36 115-150 43-78 (87)
9 1t2k_D Cyclic-AMP-dependent tr 82.4 3.8 0.00013 27.9 6.1 35 117-151 24-58 (61)
10 1ci6_A Transcription factor AT 82.3 4.4 0.00015 28.0 6.4 36 117-152 25-60 (63)
11 2yy0_A C-MYC-binding protein; 82.2 2.1 7.3E-05 28.9 4.6 30 116-145 20-49 (53)
12 1jnm_A Proto-oncogene C-JUN; B 80.8 1.9 6.4E-05 29.7 4.0 36 117-152 24-59 (62)
13 1t2k_D Cyclic-AMP-dependent tr 80.8 3.1 0.00011 28.4 5.1 31 115-145 29-59 (61)
14 2yy0_A C-MYC-binding protein; 80.5 2.5 8.4E-05 28.6 4.4 32 121-152 18-49 (53)
15 3w03_C DNA repair protein XRCC 79.4 2.2 7.4E-05 36.0 4.7 32 115-146 152-183 (184)
16 1gu4_A CAAT/enhancer binding p 79.1 1.4 4.9E-05 32.1 3.0 29 119-147 40-68 (78)
17 2dgc_A Protein (GCN4); basic d 78.2 3 0.0001 29.0 4.4 32 115-146 30-61 (63)
18 1ci6_A Transcription factor AT 76.9 4.2 0.00014 28.1 4.8 33 115-147 30-62 (63)
19 3m48_A General control protein 76.1 4.4 0.00015 24.9 4.1 27 118-144 3-29 (33)
20 1kd8_B GABH BLL, GCN4 acid bas 75.4 8 0.00027 24.1 5.2 30 117-146 3-32 (36)
21 1dh3_A Transcription factor CR 74.8 2.7 9.4E-05 28.4 3.3 30 116-145 23-52 (55)
22 1gu4_A CAAT/enhancer binding p 74.5 3.1 0.00011 30.3 3.7 31 115-145 43-73 (78)
23 3c3g_A Alpha/beta peptide with 72.5 6.7 0.00023 24.0 4.3 28 118-145 3-30 (33)
24 2wt7_A Proto-oncogene protein 72.5 8.3 0.00028 26.5 5.4 31 115-145 30-60 (63)
25 3c3f_A Alpha/beta peptide with 71.1 7.5 0.00026 24.0 4.3 29 117-145 3-31 (34)
26 1jnm_A Proto-oncogene C-JUN; B 69.4 3.3 0.00011 28.4 2.8 31 115-145 29-59 (62)
27 2oqq_A Transcription factor HY 68.4 7 0.00024 25.3 3.9 24 115-138 17-40 (42)
28 2oxj_A Hybrid alpha/beta pepti 67.5 13 0.00046 22.8 4.9 28 117-144 3-30 (34)
29 2wq1_A General control protein 67.5 14 0.00047 22.7 4.9 28 118-145 3-30 (33)
30 2wt7_B Transcription factor MA 67.3 8.1 0.00028 28.9 4.7 30 117-146 50-79 (90)
31 1a93_B MAX protein, coiled coi 66.9 6.1 0.00021 24.5 3.3 23 117-139 9-31 (34)
32 1uo4_A General control protein 66.4 9 0.00031 23.6 3.9 28 118-145 4-31 (34)
33 3e98_A GAF domain of unknown f 66.4 21 0.00072 30.9 8.0 73 52-157 42-114 (252)
34 2w6b_A RHO guanine nucleotide 66.1 23 0.00079 24.1 6.3 36 117-152 12-50 (56)
35 1kd8_A GABH AIV, GCN4 acid bas 64.9 13 0.00043 23.2 4.4 29 118-146 4-32 (36)
36 2jee_A YIIU; FTSZ, septum, coi 63.5 18 0.00062 26.5 5.9 26 117-142 22-47 (81)
37 2bni_A General control protein 63.1 8.3 0.00028 23.8 3.3 28 118-145 4-31 (34)
38 3s9g_A Protein hexim1; cyclin 62.7 9.8 0.00033 29.0 4.4 22 118-139 68-89 (104)
39 2hy6_A General control protein 61.0 16 0.00053 22.5 4.3 28 118-145 4-31 (34)
40 2wt7_B Transcription factor MA 59.0 21 0.0007 26.6 5.6 34 115-148 55-88 (90)
41 3ra3_B P2F; coiled coil domain 58.3 11 0.00037 21.8 3.0 21 120-140 5-25 (28)
42 3m91_A Proteasome-associated A 57.5 29 0.001 23.1 5.6 34 115-148 9-42 (51)
43 2wuj_A Septum site-determining 56.5 10 0.00034 25.7 3.3 30 115-144 27-56 (57)
44 1nlw_A MAD protein, MAX dimeri 55.7 18 0.00063 26.0 4.8 33 115-147 47-79 (80)
45 2r2v_A GCN4 leucine zipper; co 55.7 29 0.001 21.3 4.9 29 117-145 3-31 (34)
46 1gd2_E Transcription factor PA 54.8 14 0.00049 26.2 4.0 33 117-149 31-63 (70)
47 1dh3_A Transcription factor CR 54.0 5.4 0.00018 26.9 1.5 24 115-138 29-52 (55)
48 1fmh_A General control protein 53.2 28 0.00095 20.8 4.4 29 117-145 3-31 (33)
49 2j5u_A MREC protein; bacterial 52.9 6.6 0.00022 34.1 2.3 29 117-145 21-49 (255)
50 3t97_C Nuclear pore glycoprote 52.2 27 0.00094 24.3 5.0 41 115-155 12-52 (64)
51 3ra3_A P1C; coiled coil domain 51.1 21 0.00071 20.6 3.5 24 119-142 4-27 (28)
52 3r4h_A Coiled coil helix CC-TE 50.7 23 0.00078 21.2 3.7 27 117-143 4-30 (34)
53 1go4_E MAD1 (mitotic arrest de 50.5 30 0.001 26.3 5.3 30 116-145 13-42 (100)
54 3q4f_C DNA repair protein XRCC 50.3 14 0.00047 31.1 3.7 24 115-138 161-184 (186)
55 2jee_A YIIU; FTSZ, septum, coi 50.3 55 0.0019 23.9 6.6 24 127-150 53-76 (81)
56 2dgc_A Protein (GCN4); basic d 50.2 12 0.00042 25.8 3.0 25 115-139 37-61 (63)
57 1nkp_B MAX protein, MYC proto- 50.0 21 0.00072 25.4 4.3 30 116-145 48-77 (83)
58 2xdj_A Uncharacterized protein 49.3 50 0.0017 24.0 6.3 32 119-150 24-55 (83)
59 1wlq_A Geminin; coiled-coil; 2 49.3 31 0.0011 25.3 5.1 36 120-156 36-71 (83)
60 4g2k_A General control protein 48.9 43 0.0015 26.3 6.1 39 119-157 18-56 (125)
61 1txp_A HnRNP C, heterogeneous 45.4 37 0.0013 20.0 4.0 23 132-154 2-24 (28)
62 1gd2_E Transcription factor PA 45.3 41 0.0014 23.7 5.1 31 115-145 36-66 (70)
63 1uii_A Geminin; human, DNA rep 43.3 60 0.002 23.8 5.8 28 121-148 45-72 (83)
64 1uii_A Geminin; human, DNA rep 42.3 57 0.002 23.9 5.6 31 118-148 49-79 (83)
65 2xdj_A Uncharacterized protein 42.2 93 0.0032 22.5 6.8 38 115-152 27-64 (83)
66 1nlw_A MAD protein, MAX dimeri 42.1 23 0.0008 25.4 3.5 27 122-148 47-73 (80)
67 1t6f_A Geminin; coiled-coil, c 42.1 61 0.0021 20.2 5.4 29 120-148 5-33 (37)
68 2w6a_A ARF GTPase-activating p 41.9 84 0.0029 21.7 6.6 37 117-153 22-58 (63)
69 1got_G GT-gamma; complex (GTP- 41.0 37 0.0013 24.2 4.3 39 122-160 17-59 (73)
70 1dip_A Delta-sleep-inducing pe 39.6 29 0.001 25.0 3.6 20 115-134 22-41 (78)
71 1nkp_A C-MYC, MYC proto-oncoge 38.8 32 0.0011 25.1 3.8 26 118-143 55-80 (88)
72 3cve_A Homer protein homolog 1 38.1 1.1E+02 0.0036 21.8 7.1 34 115-148 7-40 (72)
73 1nkp_A C-MYC, MYC proto-oncoge 37.7 74 0.0025 23.0 5.7 33 121-153 51-83 (88)
74 3m9b_A Proteasome-associated A 37.7 29 0.00098 30.5 4.0 36 117-152 56-91 (251)
75 2w6a_A ARF GTPase-activating p 37.7 30 0.001 24.0 3.2 24 119-142 38-61 (63)
76 3l4f_A RHO guanine nucleotide 37.6 1E+02 0.0034 21.4 6.3 39 118-156 10-51 (61)
77 3cvf_A Homer-3, homer protein 37.3 1.2E+02 0.0039 22.0 7.0 34 115-148 13-46 (79)
78 2wvr_A Geminin; DNA replicatio 37.3 1.2E+02 0.0042 25.7 7.7 48 121-169 114-161 (209)
79 1ik9_A DNA repair protein XRCC 37.2 57 0.002 27.6 5.7 30 119-148 136-165 (213)
80 3l4q_C Phosphatidylinositol 3- 35.0 1.5E+02 0.0053 24.3 7.8 50 118-168 120-169 (170)
81 3m91_A Proteasome-associated A 34.6 1E+02 0.0034 20.5 6.8 34 115-148 16-49 (51)
82 1go4_E MAD1 (mitotic arrest de 34.3 46 0.0016 25.2 4.1 26 115-140 19-44 (100)
83 2oa5_A Hypothetical protein BQ 33.8 23 0.00079 27.4 2.4 23 117-139 10-32 (110)
84 2zxx_A Geminin; coiled-coil, c 33.6 58 0.002 23.6 4.4 24 121-144 33-56 (79)
85 1wt6_A Myotonin-protein kinase 33.3 1.4E+02 0.0047 21.8 6.4 38 118-155 27-64 (81)
86 3he5_B Synzip2; heterodimeric 33.3 99 0.0034 20.0 6.4 31 118-152 6-36 (52)
87 2wuj_A Septum site-determining 33.3 25 0.00085 23.6 2.3 24 115-138 34-57 (57)
88 3i00_A HIP-I, huntingtin-inter 32.9 95 0.0033 24.0 5.9 22 117-138 17-38 (120)
89 3he5_A Synzip1; heterodimeric 32.9 98 0.0034 19.8 6.8 23 118-140 6-28 (49)
90 2k48_A Nucleoprotein; viral pr 32.6 1E+02 0.0036 23.5 5.9 40 121-164 34-73 (107)
91 1p9i_A Cortexillin I/GCN4 hybr 32.0 69 0.0023 18.8 3.7 22 116-137 7-28 (31)
92 3a5t_A Transcription factor MA 31.9 0.36 1.2E-05 37.4 -8.2 35 119-153 69-103 (107)
93 3w03_C DNA repair protein XRCC 31.8 95 0.0032 25.9 6.1 38 115-152 145-182 (184)
94 1deb_A APC protein, adenomatou 31.2 1.2E+02 0.0041 20.3 6.7 30 115-144 10-39 (54)
95 4h22_A Leucine-rich repeat fli 30.8 1E+02 0.0036 23.4 5.6 34 115-148 37-70 (103)
96 1g6u_A Domain swapped dimer; d 29.9 71 0.0024 20.4 3.8 23 117-139 22-44 (48)
97 2wvr_A Geminin; DNA replicatio 29.5 1.2E+02 0.004 25.8 6.3 49 118-166 118-169 (209)
98 3hnw_A Uncharacterized protein 28.3 1.7E+02 0.0058 22.9 6.8 34 119-152 79-112 (138)
99 4emc_A Monopolin complex subun 26.9 1E+02 0.0035 25.9 5.4 26 118-143 23-48 (190)
100 3sja_C Golgi to ER traffic pro 25.4 1.7E+02 0.006 20.3 6.2 34 121-154 5-50 (65)
101 3mq7_A Bone marrow stromal ant 25.2 1.5E+02 0.005 23.1 5.6 26 118-143 74-99 (121)
102 1a93_A Coiled coil, LZ, MYC pr 25.2 69 0.0024 19.6 3.0 23 118-140 10-32 (34)
103 1am9_A Srebp-1A, protein (ster 24.3 1.2E+02 0.0041 21.5 4.8 27 116-142 51-77 (82)
104 1gk6_A Vimentin; intermediate 23.8 1.3E+02 0.0044 20.1 4.6 28 122-149 7-34 (59)
105 4etp_A Kinesin-like protein KA 23.7 1.1E+02 0.0038 28.0 5.7 31 118-148 6-36 (403)
106 1use_A VAsp, vasodilator-stimu 23.6 1.6E+02 0.0053 19.2 5.6 31 123-156 8-39 (45)
107 3kqg_A Langerin, C-type lectin 23.5 73 0.0025 24.8 3.8 6 200-205 104-109 (182)
108 1nkp_B MAX protein, MYC proto- 23.5 1.5E+02 0.0051 20.8 5.2 33 121-153 46-78 (83)
109 3oja_A Leucine-rich immune mol 23.4 1.6E+02 0.0054 26.8 6.6 36 121-156 441-476 (487)
110 1joc_A EEA1, early endosomal a 23.4 1.6E+02 0.0053 22.5 5.6 31 117-147 13-43 (125)
111 2ic6_A Nucleocapsid protein; h 22.5 1.8E+02 0.0062 21.0 5.3 19 124-142 7-25 (78)
112 2zvf_A Alanyl-tRNA synthetase; 22.2 1.1E+02 0.0036 24.0 4.6 27 115-141 32-58 (171)
113 3sjb_C Golgi to ER traffic pro 22.2 1.4E+02 0.0048 22.2 4.8 37 116-152 50-86 (93)
114 1jcd_A Major outer membrane li 22.2 1.8E+02 0.0061 19.3 5.3 23 117-139 13-35 (52)
115 1ykh_B RNA polymerase II holoe 21.9 1.4E+02 0.0047 23.2 5.1 32 122-153 92-123 (132)
116 3v86_A De novo design helix; c 21.8 1.2E+02 0.004 17.3 3.3 19 120-138 5-23 (27)
117 2xv5_A Lamin-A/C; structural p 21.6 2.2E+02 0.0074 20.1 6.2 34 118-151 8-41 (74)
118 1bb1_B Designed, thermostable 21.0 1.5E+02 0.005 17.9 4.7 27 117-143 4-30 (36)
119 1rtm_1 Mannose-binding protein 20.3 1.2E+02 0.004 22.8 4.3 24 120-143 2-25 (149)
120 3a7p_A Autophagy protein 16; c 20.1 2.8E+02 0.0097 22.3 6.6 12 120-131 73-84 (152)
121 3hnw_A Uncharacterized protein 20.1 1.9E+02 0.0066 22.6 5.6 22 118-139 85-106 (138)
122 2v66_B Nuclear distribution pr 20.0 2.1E+02 0.0072 21.8 5.6 34 115-148 35-68 (111)
No 1
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.95 E-value=5.7e-29 Score=200.77 Aligned_cols=71 Identities=49% Similarity=0.772 Sum_probs=66.9
Q ss_pred CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc-----------CccceeecCCccCCchhhhccccccC
Q 026263 3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHRELLTEIRRRK 71 (241)
Q Consensus 3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~-----------~~~~ef~h~~F~rg~~~lL~~I~Rkk 71 (241)
-+.+|||||+++|+++|||+||+|+||+||+||||+|||+|+. ++.|+|+||+|+||+|+||..|+||+
T Consensus 42 ~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~ 121 (125)
T 2ldu_A 42 SGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKV 121 (125)
T ss_dssp TSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCT
T ss_pred CCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCC
Confidence 4689999999999999999999999999999999999999995 36899999999999999999999998
Q ss_pred CC
Q 026263 72 TA 73 (241)
Q Consensus 72 ~~ 73 (241)
+.
T Consensus 122 ~~ 123 (125)
T 2ldu_A 122 TS 123 (125)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 2
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=99.95 E-value=3.5e-29 Score=196.46 Aligned_cols=68 Identities=44% Similarity=0.716 Sum_probs=64.7
Q ss_pred CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc----------CccceeecCCccCCchhhhcccccc
Q 026263 3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV----------ADKWEFANENFRRGHRELLTEIRRR 70 (241)
Q Consensus 3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~----------~~~~ef~h~~F~rg~~~lL~~I~Rk 70 (241)
-+.||||||+++|+++|||+||+|+||+||+||||+|||+|+. ++.|+|+||+|+||+|+||..|+||
T Consensus 29 ~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 29 DGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence 4679999999999999999999999999999999999999996 3689999999999999999999996
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.84 E-value=2.9e-22 Score=156.44 Aligned_cols=53 Identities=45% Similarity=0.884 Sum_probs=50.3
Q ss_pred CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc-----------CccceeecCC
Q 026263 3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANEN 55 (241)
Q Consensus 3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~-----------~~~~ef~h~~ 55 (241)
-+.+|||||+++|+++|||+||+|+||+||+||||+|||+|+. +++|||+||+
T Consensus 37 ~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 37 SGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 100 (102)
T ss_dssp TSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred CCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence 4689999999999999999999999999999999999999998 5799999986
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=90.17 E-value=0.92 Score=31.46 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=31.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 154 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~ 154 (241)
....|..+.+.|..+|..|..++..++..+..|-..|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999999999999998888888877766643
No 5
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=85.69 E-value=1.9 Score=29.04 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
+..|-.+.+.|++||..|++||..--.++.+|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 45678889999999999999987655544443
No 6
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=84.92 E-value=1.9 Score=25.89 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=23.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.++.|.+|+..|++|...|.=|++.+++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3578899999999999999999888775
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.23 E-value=1.6 Score=32.57 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
..+..+.+.|..||..|..++..+++.+..|-.+|.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777766666555554
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=82.77 E-value=2.4 Score=31.49 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=28.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELIT 150 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~ 150 (241)
..+..|..||..|+.++..|..|+..++..+.++-.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 456789999999999999999999998887766544
No 9
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.41 E-value=3.8 Score=27.91 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITF 151 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~F 151 (241)
...|..+.+.|..+|..|..++..++..+..|-..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655554433
No 10
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.29 E-value=4.4 Score=28.01 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
...|..+.+.|..+|..|..++..++..+..|=..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888877777665554443
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.20 E-value=2.1 Score=28.88 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=21.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
.+..|..||+.|+.++..|..++..++.+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777788888888887777777766644
No 12
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.82 E-value=1.9 Score=29.68 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
...|..+.+.|..+|..|..++..++..+..|-..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777776665544333
No 13
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.77 E-value=3.1 Score=28.40 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..+..|..+|..|+.+...|..|+..++.++
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567899999999999999999999888653
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.54 E-value=2.5 Score=28.56 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
..+++.|+.||..|+.++..++++++++-.-|
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888777764433
No 15
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=79.44 E-value=2.2 Score=36.00 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=23.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~ 146 (241)
+..++|+.+|++|+++|+.|.+|..++.++.+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788888888888888887777666543
No 16
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=79.10 E-value=1.4 Score=32.10 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
.+..+.+.|..+|..|..++..+++.+..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655554443
No 17
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=78.16 E-value=3 Score=28.95 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=25.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~ 146 (241)
..+..|..+.+.|..+|..|..|+..++.++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999999988887653
No 18
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.87 E-value=4.2 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=27.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
..+..|..+|..|+.+...|..|+..++..+-+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566789999999999999999999988876543
No 19
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=76.14 E-value=4.4 Score=24.88 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
..|++..+.|-.+|..|..|+.+++..
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457888999999999999999988764
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=75.43 E-value=8 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~ 146 (241)
+..|.+..+.|..++..|..|+++++....
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 356889999999999999999999887653
No 21
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.81 E-value=2.7 Score=28.39 Aligned_cols=30 Identities=30% Similarity=0.294 Sum_probs=23.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
.+.+|+.++..|..+|..|..++..++..+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888888888888877654
No 22
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=74.52 E-value=3.1 Score=30.29 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=26.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..+..|..||..|+.++..|..|+..++..+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999988654
No 23
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.52 E-value=6.7 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..|++..+.|-.+|..|..|+++++...
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678899999999999999999988654
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.46 E-value=8.3 Score=26.47 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=26.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..+..|..+|..|+.+...|..|+..++..+
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999998887654
No 25
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=71.14 E-value=7.5 Score=23.95 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
+..|++..+.|-.+|..|..|+++++...
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35678999999999999999999988754
No 26
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.38 E-value=3.3 Score=28.37 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=24.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..+..|..+|..|+.+...|..|+..++.++
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999998877653
No 27
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.44 E-value=7 Score=25.25 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=16.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSEL 138 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL 138 (241)
...+.|.+.+..|.+||++|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344667777777777777777644
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=67.52 E-value=13 Score=22.83 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
+..|.+..+.|-.+|..|..|+.+++..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3467888888888999998888887754
No 29
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=67.51 E-value=14 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..|++.++.|-.++..|..|+++++...
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4678999999999999999999988654
No 30
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=67.29 E-value=8.1 Score=28.86 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~ 146 (241)
...|+.++..|+.+...|.+|+.++.+-.+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544433
No 31
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=66.86 E-value=6.1 Score=24.47 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
-++...+++.|+++|..|..++-
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 35678889999999988887764
No 32
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=66.40 E-value=9 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..|++..+.|-.+|..|..|+++++...
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999988653
No 33
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=66.38 E-value=21 Score=30.86 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=29.8
Q ss_pred ecCCccCCchhhhccccccCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCchhhhhHHhHHHHHHHHHHHH
Q 026263 52 ANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDN 131 (241)
Q Consensus 52 ~h~~F~rg~~~lL~~I~Rkk~~~~~~~q~~~~~~~~~~~~~~~d~~~~~~~s~~~~~~~~ve~~~~a~L~~Ene~Lkren 131 (241)
.||.|--.+++||..|.=.-+.. + .. | -+| -|+..|.++|+.|+.+.
T Consensus 42 ~~PdFf~~~~~Ll~~L~lph~~~-------~---------------aV---S-------L~e-rQ~~~LR~r~~~Le~~L 88 (252)
T 3e98_A 42 QHPEFFVEHDELIPELRIPHQPG-------D---------------AV---S-------LVE-RQVRLLRERNIEMRHRL 88 (252)
T ss_dssp -----------------------------------------------C---H-------HHH-HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHhhCHHHHHhCCCCCCCC-------C---------------cc---c-------HHH-HHHHHHHHHHHHHHHHH
Confidence 79999999999998775421110 0 00 0 022 45667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026263 132 ETLSSELAQAKKQCDELITFLTEYVK 157 (241)
Q Consensus 132 ~~L~~EL~~~kk~~~~Li~FL~~~v~ 157 (241)
..|..--..-.+..+++..+....+.
T Consensus 89 ~~Li~~A~~Ne~l~~~~~~l~l~LL~ 114 (252)
T 3e98_A 89 SQLMDVARENDRLFDKTRRLVLDLLD 114 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77766555555666666666666665
No 34
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=66.14 E-value=23 Score=24.10 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAK---KQCDELITFL 152 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~k---k~~~~Li~FL 152 (241)
+-+|.+++..|++||..|.+-+..-+ +..+.|+.-+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999998887544 4455554433
No 35
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.87 E-value=13 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCD 146 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~ 146 (241)
..|.++.+.|-.++..|..|+.+++....
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45788899999999999999998887543
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.55 E-value=18 Score=26.47 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
++-|..|++.|+.+|..|.++...++
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777766665533
No 37
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=63.07 E-value=8.3 Score=23.79 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..|++..+.|-.++..|..|+++++...
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4678899999999999999999988754
No 38
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.69 E-value=9.8 Score=29.02 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~ 139 (241)
..|..|+++|+.||+.|.+|-.
T Consensus 68 ~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 39
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=60.96 E-value=16 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
..|.+..+.|-.+|..|..|+++++...
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4578899999999999999999988754
No 40
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=59.03 E-value=21 Score=26.64 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=25.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.....|..+.+.|++|+..+.+|+..+++.++.|
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445777888888888888888888888777654
No 41
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.32 E-value=11 Score=21.80 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~ 140 (241)
|.+.|.+|+.|...|.-|++.
T Consensus 5 lkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 42
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.46 E-value=29 Score=23.13 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=21.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.....|..++..|-..|..|..-|...+.++..|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777766666666655554
No 43
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.47 E-value=10 Score=25.66 Aligned_cols=30 Identities=10% Similarity=0.229 Sum_probs=21.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
..+..+.++++.|.++|..|..++..++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678889999999999999988877653
No 44
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.73 E-value=18 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
..+..|.+++.+|..++..|..|...+++++++
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566777777777777777766666665543
No 45
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=55.65 E-value=29 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
+..|.+..+.|-.++..|..|++++++..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34678899999999999999999988754
No 46
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.80 E-value=14 Score=26.16 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=18.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
+.+|+.++..|...+..|..|...++.++..|.
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555555555555555554443
No 47
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.97 E-value=5.4 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=15.7
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSEL 138 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL 138 (241)
.++..|..||..|+.++..|..++
T Consensus 29 ~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 29 NRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777766554
No 48
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=53.15 E-value=28 Score=20.75 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
++.|..|..+-..+|-.|.+|++++...|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 35678888888888888888888876544
No 49
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=52.86 E-value=6.6 Score=34.13 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
+..|.+||++|++||..|..++.+++...
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~ 49 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLK 49 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998888766543
No 50
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=52.24 E-value=27 Score=24.29 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=35.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
.++..|..+..+.+++...|-++|.-...++++|=.+|..|
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~ 52 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999998888887777554
No 51
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=51.12 E-value=21 Score=20.57 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.|+=||+.|......|.+.++.++
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666555543
No 52
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=50.65 E-value=23 Score=21.25 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=19.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
++.+.+|+..+++|...+.=||+..++
T Consensus 4 laaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567777888888888777777776553
No 53
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.47 E-value=30 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=20.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
.+..|..+++.|.+|+..|.++...+.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777776655443
No 54
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=50.33 E-value=14 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSEL 138 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL 138 (241)
+..++|..+|+.|.+||+.|.+|.
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566788889999999999888774
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.28 E-value=55 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 127 LRRDNETLSSELAQAKKQCDELIT 150 (241)
Q Consensus 127 Lkren~~L~~EL~~~kk~~~~Li~ 150 (241)
|.++|..|.+|+..-+..++.|+.
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444444443
No 56
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.25 E-value=12 Score=25.76 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=15.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
.++..|..+|..|..++..|.+++.
T Consensus 37 ~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 37 DKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777766654
No 57
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.04 E-value=21 Score=25.40 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=16.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
.+..|..+++.|..+...|..+...+++++
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666555555555555555443
No 58
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.34 E-value=50 Score=23.99 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELIT 150 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~ 150 (241)
+|...++.|+.|+..|+-.+......+++|..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555555555555555555544444444433
No 59
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=49.27 E-value=31 Score=25.33 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026263 120 LSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYV 156 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v 156 (241)
--+||++|..+...+..|++.++....+| .-|..++
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L-~elA~~~ 71 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDL-AEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34699999999999999999888655443 4444443
No 60
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=48.93 E-value=43 Score=26.33 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 157 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~ 157 (241)
.|++.++.+-..+-.+..|++++++.+..|...|.+..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN 56 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLAN 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777778888888777766666655443
No 61
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=45.41 E-value=37 Score=19.98 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026263 132 ETLSSELAQAKKQCDELITFLTE 154 (241)
Q Consensus 132 ~~L~~EL~~~kk~~~~Li~FL~~ 154 (241)
+++.+||.+.++.++-|+..|-+
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888888887776643
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.34 E-value=41 Score=23.73 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=20.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQC 145 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~ 145 (241)
.++..|..+++.|..||..|..++..++...
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766665543
No 63
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.29 E-value=60 Score=23.82 Aligned_cols=28 Identities=39% Similarity=0.508 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
-+||+.|..++..|..|++.+++...+|
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888888766554
No 64
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=42.29 E-value=57 Score=23.91 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
..|.++++.|..++..|++++..++...+.+
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888776554
No 65
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.21 E-value=93 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=26.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
.++..|..|+.+|+=.++.+.-++..++++..++..=|
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777666654444
No 66
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.07 E-value=23 Score=25.40 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 122 DENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
+=+..|+.++..|..|...++++...|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444
No 67
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=42.05 E-value=61 Score=20.16 Aligned_cols=29 Identities=38% Similarity=0.477 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.-.||++|.++...=..|++++++.-.+|
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34788888888888888888888766554
No 68
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.89 E-value=84 Score=21.71 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=29.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
+++-+..+++|-+-|..|..||..|++.+++|..--+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 4555678899999999999999999988877755443
No 69
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=41.03 E-value=37 Score=24.16 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCh
Q 026263 122 DENAKLRRDNETLSSELAQA----KKQCDELITFLTEYVKVGP 160 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL~~~----kk~~~~Li~FL~~~v~~~p 160 (241)
.+.++|+++++.|+.|+..- -+-+.+|+.|..++...+|
T Consensus 17 ~~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~~Dp 59 (73)
T 1got_G 17 TEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDP 59 (73)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGCH
T ss_pred ccHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCC
Confidence 35567777777778777643 3567888888887765443
No 70
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=39.62 E-value=29 Score=25.04 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=9.7
Q ss_pred hhHHhHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETL 134 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L 134 (241)
.++..|.+.|.+|..||..|
T Consensus 22 e~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444
No 71
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.80 E-value=32 Score=25.05 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=10.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
..|..++..|..+...|..+...+++
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444434333333333
No 72
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=38.10 E-value=1.1e+02 Score=21.80 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=26.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.++.++..+|..|...+..|.+.|...+...+.+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999998766544333
No 73
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=37.74 E-value=74 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
.+=+..|..++..|..+...+++....|..-|.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666555543
No 74
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.70 E-value=29 Score=30.48 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
+..|..+++.|...|..|..+|..+++++.+|-.-|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554444444
No 75
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.68 E-value=30 Score=23.97 Aligned_cols=24 Identities=42% Similarity=0.475 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.|++|+..|+++...|.+|-..++
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455666666666666666555444
No 76
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=37.64 E-value=1e+02 Score=21.35 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 026263 118 ADLSDENAKLRRDNETLSSELAQA---KKQCDELITFLTEYV 156 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~---kk~~~~Li~FL~~~v 156 (241)
=+|.+|...|+.|+..+++=++.. ++..++++.-+...+
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~ 51 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478899999999999888877654 445566555554443
No 77
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.35 E-value=1.2e+02 Score=21.99 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=27.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.++.++..+|..|...+..|.+.|...+...+.+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999998776544443
No 78
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.31 E-value=1.2e+02 Score=25.71 Aligned_cols=48 Identities=33% Similarity=0.457 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhcC
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQ 169 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~~~p~~l~~l~~~ 169 (241)
-+||+.|..++..|..|++.+++...+|-. |..+++.--+.|.+|++.
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLke-Lae~~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAE-VAEHVQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 368888888888888888877765444322 222221113456777654
No 79
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.17 E-value=57 Score=27.59 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.+.++|..|..+|..|.++..++..+++++
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666665555555555555544443
No 80
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=35.01 E-value=1.5e+02 Score=24.27 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHhc
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMG 168 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~~~p~~l~~l~~ 168 (241)
.....++..|-++...|+-+|.++++.-+..+..|... ++.++.|+.+++
T Consensus 120 ~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~-Gv~q~~in~~l~ 169 (170)
T 3l4q_C 120 RAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK-GARQKKINEWLG 169 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc-CCCHHHHHhhcc
Confidence 34445677788888888888888888888888888654 478888887764
No 81
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.56 E-value=1e+02 Score=20.45 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.+...|...|++|-.....-..||..++.++++|
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999988875
No 82
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.32 E-value=46 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=19.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
..+..|..|+++|++++..|-.+|.+
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888887777754
No 83
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=33.75 E-value=23 Score=27.36 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
+.+|..|+.+|+-||..|++.+-
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999998885
No 84
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=33.63 E-value=58 Score=23.63 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
-+||++|..+...+..|+..++..
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999888888888764
No 85
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=33.33 E-value=1.4e+02 Score=21.76 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 155 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~ 155 (241)
..+++|+.+.+-+|..+.++|...+++..+|.+-|.+.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999988887776543
No 86
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.31 E-value=99 Score=20.04 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
+.|...+.+|+++|-.|... .+..++||+-|
T Consensus 6 aylrkkiarlkkdnlqlerd----eqnlekiianl 36 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERD----EQNLEKIIANL 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhh----HhhHHHHHHHH
Confidence 56777888888888666543 33344454444
No 87
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=33.31 E-value=25 Score=23.63 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=13.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSEL 138 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL 138 (241)
..+..|..||..|+.++..|..+|
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345677777777777777776543
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.88 E-value=95 Score=24.00 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=13.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSEL 138 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL 138 (241)
+..|..|++.|+.++..|..|.
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666665554
No 89
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.86 E-value=98 Score=19.84 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=11.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
+.|..|...|..||++|.+.-.+
T Consensus 6 aqlenevaslenenetlkkknlh 28 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLH 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhccc
Confidence 44555555555555555544333
No 90
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.58 E-value=1e+02 Score=23.51 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQIN 164 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v~~~p~~l~ 164 (241)
..++++|..|.....++|...+++..+- ...+.++||.+|
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdA----e~~~E~DPDevN 73 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDA----EKAVEVDPDDVN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCcHHH
Confidence 4666777777777777776665544332 122334565544
No 91
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=31.98 E-value=69 Score=18.79 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSE 137 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~E 137 (241)
.++.|+.||.+|+...+.|...
T Consensus 7 llasleaenkqlkakveellak 28 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888777766543
No 92
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=31.91 E-value=0.36 Score=37.44 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
.|..+.+.|..||..|..|+..++..|+.|..|..
T Consensus 69 ~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~ 103 (107)
T 3a5t_A 69 ELQQEVEKLASENASMKLELDALRSKYEALQNFAR 103 (107)
T ss_dssp TTSSTTTTTTSTTSHHHHTTTSSSSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777777888776654
No 93
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.84 E-value=95 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=32.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
..+.-+.+.+..|+.+|..|.+|..++++..++++.-|
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667889999999999999999999999998876544
No 94
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.20 E-value=1.2e+02 Score=20.29 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=24.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQ 144 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~ 144 (241)
.|+..|..||.-|++|.+.=...|.++..-
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 567899999999999988877777766544
No 95
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=30.76 E-value=1e+02 Score=23.37 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=26.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
+.+.++.+.+..|+|++....+++.+++..+..|
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L 70 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSIL 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888888888877665
No 96
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.94 E-value=71 Score=20.43 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
++.|+.|.+.|.+....|.+.+.
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544443
No 97
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.54 E-value=1.2e+02 Score=25.83 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcChhHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQC---DELITFLTEYVKVGPDQINRI 166 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~---~~Li~FL~~~v~~~p~~l~~l 166 (241)
..|.++++.|..++..|.+|+..++.+. +.|...|..++...|+.+..+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~~ 169 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESL 169 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 4788888888888888888888877664 444455555555445544433
No 98
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.27 E-value=1.7e+02 Score=22.93 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 119 DLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 119 ~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
.|..+++.+.+++..|..||...+-.++++-.-+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555544444444443333
No 99
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.88 E-value=1e+02 Score=25.90 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
+.|..||..|..++....+|+..+++
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444443
No 100
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.38 E-value=1.7e+02 Score=20.32 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSEL------------AQAKKQCDELITFLTE 154 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL------------~~~kk~~~~Li~FL~~ 154 (241)
..+..+|++|...|..|+ +++++++++|..-|..
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~ 50 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINN 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555 3566777777665543
No 101
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.19 E-value=1.5e+02 Score=23.15 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
..|..|+..|..+.+....|+.++++
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 102
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=25.16 E-value=69 Score=19.64 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=16.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQ 140 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~ 140 (241)
..|..|-+.|++.++.|.+.|.+
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777777665
No 103
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.28 E-value=1.2e+02 Score=21.46 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=17.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~k 142 (241)
.+..|..+++.|..++..|..++.+.+
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455667777777777777766665443
No 104
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.76 E-value=1.3e+02 Score=20.14 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 122 DENAKLRRDNETLSSELAQAKKQCDELI 149 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL~~~kk~~~~Li 149 (241)
..+..|..+...++.+++++-+-++.|+
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 105
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.72 E-value=1.1e+02 Score=28.01 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
..|.++++.|+++...|..++..++....++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444333
No 106
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=23.63 E-value=1.6e+02 Score=19.16 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=14.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026263 123 ENAKLRRDN-ETLSSELAQAKKQCDELITFLTEYV 156 (241)
Q Consensus 123 Ene~Lkren-~~L~~EL~~~kk~~~~Li~FL~~~v 156 (241)
+++++|.|. ..+++|+.++++ +||.-+.+.+
T Consensus 8 dle~~KqEIL~E~RkElqK~K~---EIIeAi~~El 39 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKE---EIIEAFVQEL 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344444442 344555555554 5554444433
No 107
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=23.55 E-value=73 Score=24.78 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=4.5
Q ss_pred eEeeCC
Q 026263 200 GVWLKG 205 (241)
Q Consensus 200 gv~l~~ 205 (241)
.+||+.
T Consensus 104 ~~WIGl 109 (182)
T 3kqg_A 104 IYWIGL 109 (182)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 578887
No 108
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.52 E-value=1.5e+02 Score=20.76 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
.+=+..|+.++..|..|+..+++....|-..|.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777666655553
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.43 E-value=1.6e+02 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026263 121 SDENAKLRRDNETLSSELAQAKKQCDELITFLTEYV 156 (241)
Q Consensus 121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~~v 156 (241)
.+++++|+++++.|..++.....++.+..+-+...+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 344455555555555555555554444444444433
No 110
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.43 E-value=1.6e+02 Score=22.54 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKKQCDE 147 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~ 147 (241)
....+.|++.|+.++..|++.|..+.....+
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e 43 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLDNTTAAVQE 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888765544443
No 111
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.46 E-value=1.8e+02 Score=20.96 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026263 124 NAKLRRDNETLSSELAQAK 142 (241)
Q Consensus 124 ne~Lkren~~L~~EL~~~k 142 (241)
++.|..+....-++|...+
T Consensus 7 l~eLq~e~~~~E~QL~~A~ 25 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTR 25 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 112
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.23 E-value=1.1e+02 Score=23.99 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=20.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQA 141 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~ 141 (241)
..+..|.+|+..|++++..|..+++..
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888777664
No 113
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.21 E-value=1.4e+02 Score=22.24 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=21.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 152 (241)
Q Consensus 116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL 152 (241)
+-+.|...+++|..|.+.|..+|...+...+..+.-|
T Consensus 50 KWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 50 KWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777766666666665555444
No 114
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.16 E-value=1.8e+02 Score=19.29 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=10.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~ 139 (241)
+..|..++..|..+...|..++.
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 115
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.90 E-value=1.4e+02 Score=23.24 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 122 DENAKLRRDNETLSSELAQAKKQCDELITFLT 153 (241)
Q Consensus 122 ~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~ 153 (241)
..+.+|..||....+|+...-+.-+.++.-+.
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555554444444444443
No 116
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.79 E-value=1.2e+02 Score=17.28 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSEL 138 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL 138 (241)
|.+|.-.|+-|...|..|+
T Consensus 5 lkdevgelkgevralkdev 23 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHH
Confidence 4555555555555555554
No 117
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.56 E-value=2.2e+02 Score=20.05 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=18.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITF 151 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~F 151 (241)
..+...+..|..+...++.+++++-+-++.|+..
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Llni 41 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666555555555443
No 118
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=20.99 E-value=1.5e+02 Score=17.89 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 117 FADLSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 117 ~a~L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
.+.+.+|...+..|.+.+..|++..+-
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaiky 30 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKY 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666665543
No 119
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.32 E-value=1.2e+02 Score=22.78 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDNETLSSELAQAKK 143 (241)
Q Consensus 120 L~~Ene~Lkren~~L~~EL~~~kk 143 (241)
|.+++..|..+...|.++|..++.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555544
No 120
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.11 E-value=2.8e+02 Score=22.34 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 026263 120 LSDENAKLRRDN 131 (241)
Q Consensus 120 L~~Ene~Lkren 131 (241)
|..|+..|+.++
T Consensus 73 L~~El~~l~~ki 84 (152)
T 3a7p_A 73 LQKELKSKEQEI 84 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 121
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.11 E-value=1.9e+02 Score=22.61 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=8.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 026263 118 ADLSDENAKLRRDNETLSSELA 139 (241)
Q Consensus 118 a~L~~Ene~Lkren~~L~~EL~ 139 (241)
..+..|+..|+.++..+..++.
T Consensus 85 ~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 85 ENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 122
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.01 E-value=2.1e+02 Score=21.83 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDEL 148 (241)
Q Consensus 115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L 148 (241)
.....|..|+..|+..+..|...+-.+.+.-++|
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Done!