Query 026264
Match_columns 241
No_of_seqs 192 out of 1900
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1530 Rhodanese-related sulf 99.9 3.6E-23 7.8E-28 163.1 10.3 116 90-238 20-135 (136)
2 PLN02160 thiosulfate sulfurtra 99.9 7.3E-23 1.6E-27 164.9 11.3 116 91-241 13-130 (136)
3 cd01533 4RHOD_Repeat_2 Member 99.9 2.1E-22 4.6E-27 155.2 11.5 101 90-234 7-109 (109)
4 PRK00162 glpE thiosulfate sulf 99.9 1.7E-22 3.7E-27 155.5 10.8 103 91-239 3-105 (108)
5 cd01518 RHOD_YceA Member of th 99.9 1.1E-22 2.5E-27 154.5 9.2 99 94-232 3-101 (101)
6 cd01527 RHOD_YgaP Member of th 99.9 2.7E-22 5.9E-27 151.6 10.8 98 93-237 2-99 (99)
7 cd01519 RHOD_HSP67B2 Member of 99.9 1.7E-21 3.7E-26 148.5 10.7 104 96-232 2-106 (106)
8 cd01521 RHOD_PspE2 Member of t 99.9 7.3E-21 1.6E-25 147.1 11.4 101 93-237 8-110 (110)
9 cd01534 4RHOD_Repeat_3 Member 99.8 6.2E-21 1.3E-25 143.5 10.4 92 95-231 1-94 (95)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 5.9E-21 1.3E-25 158.1 11.2 116 90-237 33-162 (162)
11 cd01523 RHOD_Lact_B Member of 99.8 4.9E-21 1.1E-25 145.1 9.1 98 95-231 1-99 (100)
12 cd01447 Polysulfide_ST Polysul 99.8 6.9E-21 1.5E-25 144.1 9.9 102 95-234 1-103 (103)
13 cd01520 RHOD_YbbB Member of th 99.8 1.5E-20 3.3E-25 149.3 11.5 121 95-232 1-126 (128)
14 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.2E-20 2.5E-25 141.2 10.2 91 95-231 2-95 (96)
15 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.9E-20 4.1E-25 146.6 11.6 114 95-234 2-122 (122)
16 cd01526 RHOD_ThiF Member of th 99.8 1.2E-20 2.5E-25 148.6 10.3 110 92-237 7-118 (122)
17 cd01528 RHOD_2 Member of the R 99.8 1.4E-20 3E-25 143.0 10.0 96 95-233 2-99 (101)
18 cd01524 RHOD_Pyr_redox Member 99.8 2.2E-20 4.9E-25 139.1 10.0 89 95-231 1-89 (90)
19 smart00450 RHOD Rhodanese Homo 99.8 3.2E-20 7E-25 137.4 10.8 98 107-236 3-100 (100)
20 cd01525 RHOD_Kc Member of the 99.8 2.4E-20 5.2E-25 142.1 9.7 102 95-231 1-104 (105)
21 cd01449 TST_Repeat_2 Thiosulfa 99.8 2E-20 4.4E-25 145.3 9.0 105 95-231 1-117 (118)
22 cd01522 RHOD_1 Member of the R 99.8 2.9E-20 6.4E-25 145.6 8.9 103 95-233 1-105 (117)
23 PLN02723 3-mercaptopyruvate su 99.8 1E-19 2.3E-24 165.6 12.6 122 93-240 22-152 (320)
24 cd01530 Cdc25 Cdc25 phosphatas 99.8 6.2E-20 1.3E-24 144.9 9.7 99 93-231 2-120 (121)
25 PF00581 Rhodanese: Rhodanese- 99.8 6E-20 1.3E-24 140.0 9.3 107 96-232 1-112 (113)
26 PRK11493 sseA 3-mercaptopyruva 99.8 1.3E-19 2.8E-24 162.0 12.6 121 94-240 6-136 (281)
27 PRK01415 hypothetical protein; 99.8 8.1E-20 1.8E-24 160.5 11.0 135 40-234 79-213 (247)
28 cd01535 4RHOD_Repeat_4 Member 99.8 1.2E-19 2.5E-24 147.8 10.3 95 100-240 2-97 (145)
29 cd01445 TST_Repeats Thiosulfat 99.8 4.1E-19 8.8E-24 143.4 11.5 109 95-231 1-137 (138)
30 cd01529 4RHOD_Repeats Member o 99.8 2.3E-19 5.1E-24 135.0 9.4 86 106-231 10-95 (96)
31 cd01532 4RHOD_Repeat_1 Member 99.8 3.9E-19 8.4E-24 133.3 9.6 88 103-232 5-92 (92)
32 cd00158 RHOD Rhodanese Homolog 99.8 3.4E-19 7.4E-24 130.2 8.6 88 100-231 2-89 (89)
33 COG2897 SseA Rhodanese-related 99.8 6.6E-19 1.4E-23 157.5 12.0 116 94-241 157-284 (285)
34 PLN02723 3-mercaptopyruvate su 99.8 3.5E-19 7.5E-24 162.2 10.2 116 94-240 191-318 (320)
35 PRK11493 sseA 3-mercaptopyruva 99.8 4.4E-19 9.5E-24 158.6 10.5 115 95-241 155-281 (281)
36 PRK09629 bifunctional thiosulf 99.8 7.7E-19 1.7E-23 171.9 13.0 121 94-240 10-130 (610)
37 PRK08762 molybdopterin biosynt 99.8 7E-19 1.5E-23 163.4 11.9 104 92-240 2-105 (376)
38 cd01531 Acr2p Eukaryotic arsen 99.8 9E-19 1.9E-23 135.8 10.0 102 92-233 1-112 (113)
39 COG0607 PspE Rhodanese-related 99.8 1.1E-18 2.4E-23 133.1 9.8 101 97-241 9-110 (110)
40 PRK05320 rhodanese superfamily 99.8 2.3E-18 4.9E-23 152.5 11.1 102 92-233 109-216 (257)
41 PRK00142 putative rhodanese-re 99.8 5.5E-18 1.2E-22 154.0 11.7 102 92-233 111-212 (314)
42 TIGR02981 phageshock_pspE phag 99.7 1E-17 2.3E-22 128.5 9.3 81 107-232 17-97 (101)
43 PRK09629 bifunctional thiosulf 99.7 1.1E-17 2.4E-22 163.8 11.0 116 94-240 148-272 (610)
44 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 1.8E-17 3.8E-22 128.7 9.6 99 93-231 2-112 (113)
45 COG2897 SseA Rhodanese-related 99.7 3.9E-17 8.5E-22 146.1 12.3 122 93-240 11-139 (285)
46 PRK10287 thiosulfate:cyanide s 99.7 2.5E-17 5.4E-22 127.1 9.2 81 107-232 19-99 (104)
47 PRK07878 molybdopterin biosynt 99.7 2.8E-17 6.1E-22 153.5 11.0 102 91-236 285-387 (392)
48 TIGR03167 tRNA_sel_U_synt tRNA 99.7 5.6E-17 1.2E-21 147.2 9.1 111 108-239 2-121 (311)
49 PRK07411 hypothetical protein; 99.7 2.5E-16 5.3E-21 147.1 10.5 106 90-237 279-386 (390)
50 PRK05597 molybdopterin biosynt 99.7 3.3E-16 7.3E-21 144.6 10.4 96 92-233 260-355 (355)
51 PRK11784 tRNA 2-selenouridine 99.7 2.9E-16 6.2E-21 144.4 9.0 125 96-237 4-133 (345)
52 cd01446 DSP_MapKP N-terminal r 99.6 5.3E-15 1.1E-19 117.7 11.4 122 94-233 1-127 (132)
53 COG1054 Predicted sulfurtransf 99.6 1.6E-15 3.4E-20 134.9 7.0 139 36-233 75-213 (308)
54 PRK05600 thiamine biosynthesis 99.6 9.5E-15 2E-19 135.6 9.2 95 93-228 271-369 (370)
55 KOG1529 Mercaptopyruvate sulfu 99.3 5.6E-12 1.2E-16 111.7 9.4 121 94-240 6-137 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.3 3.8E-12 8.2E-17 122.0 8.9 73 107-225 406-482 (482)
57 KOG3772 M-phase inducer phosph 99.2 1.2E-11 2.5E-16 111.8 6.9 103 90-233 153-276 (325)
58 KOG2017 Molybdopterin synthase 99.1 2.1E-10 4.5E-15 104.2 6.8 105 93-237 317-423 (427)
59 KOG1529 Mercaptopyruvate sulfu 99.0 1.8E-09 3.8E-14 96.0 8.7 96 104-232 168-275 (286)
60 COG5105 MIH1 Mitotic inducer, 98.4 6E-07 1.3E-11 81.1 6.8 101 90-232 239-357 (427)
61 COG2603 Predicted ATPase [Gene 97.7 4.3E-05 9.3E-10 68.5 3.9 113 103-231 10-127 (334)
62 KOG1717 Dual specificity phosp 95.8 0.017 3.6E-07 51.6 5.3 120 94-233 5-124 (343)
63 PF04273 DUF442: Putative phos 95.5 0.042 9.1E-07 42.7 5.9 27 93-119 13-39 (110)
64 KOG3636 Uncharacterized conser 94.8 0.24 5.2E-06 47.4 9.8 48 93-140 307-358 (669)
65 KOG1093 Predicted protein kina 94.7 0.011 2.3E-07 57.7 0.8 104 87-231 616-719 (725)
66 TIGR01244 conserved hypothetic 94.6 0.14 3E-06 40.9 6.7 28 93-120 13-40 (135)
67 PF13350 Y_phosphatase3: Tyros 92.0 1.2 2.6E-05 36.4 8.5 41 90-130 25-68 (164)
68 PRK00142 putative rhodanese-re 91.0 0.066 1.4E-06 49.0 -0.0 49 95-145 16-64 (314)
69 cd00127 DSPc Dual specificity 88.0 1.3 2.8E-05 34.4 5.4 29 176-217 79-109 (139)
70 PF01451 LMWPc: Low molecular 84.4 1.1 2.3E-05 35.4 3.2 37 181-230 1-41 (138)
71 TIGR03167 tRNA_sel_U_synt tRNA 84.0 1.9 4.2E-05 39.4 5.1 35 92-126 135-172 (311)
72 smart00195 DSPc Dual specifici 83.2 3.6 7.7E-05 32.1 5.7 32 174-218 74-107 (138)
73 COG3453 Uncharacterized protei 80.3 6.5 0.00014 31.3 6.0 94 93-213 14-108 (130)
74 PRK10126 tyrosine phosphatase; 74.2 4.2 9.2E-05 32.7 3.7 38 179-230 3-40 (147)
75 PRK11391 etp phosphotyrosine-p 73.4 5.1 0.00011 32.3 3.9 38 179-230 3-40 (144)
76 PLN02727 NAD kinase 72.1 15 0.00033 38.5 7.7 84 92-190 266-353 (986)
77 TIGR02689 ars_reduc_gluta arse 71.2 6.1 0.00013 30.8 3.8 37 179-228 1-37 (126)
78 smart00226 LMWPc Low molecular 67.7 5.3 0.00011 31.5 2.8 37 181-230 1-37 (140)
79 PF09992 DUF2233: Predicted pe 67.7 4.8 0.0001 32.8 2.7 47 174-229 96-142 (170)
80 PRK13530 arsenate reductase; P 65.4 10 0.00022 30.0 4.1 37 179-228 4-40 (133)
81 COG0394 Wzb Protein-tyrosine-p 61.1 11 0.00023 30.4 3.4 38 179-229 3-40 (139)
82 cd00115 LMWPc Substituted upda 60.3 11 0.00023 29.8 3.3 38 180-230 2-40 (141)
83 PTZ00242 protein tyrosine phos 54.8 27 0.00059 28.8 5.0 16 174-189 94-109 (166)
84 COG0062 Uncharacterized conser 54.3 33 0.00072 29.5 5.5 33 178-222 49-81 (203)
85 TIGR02691 arsC_pI258_fam arsen 51.6 18 0.00038 28.5 3.2 35 181-228 1-35 (129)
86 KOG3425 Uncharacterized conser 51.5 27 0.00059 27.8 4.1 58 173-237 20-86 (128)
87 PLN03050 pyridoxine (pyridoxam 50.0 28 0.00062 30.7 4.6 34 178-223 60-93 (246)
88 cd02071 MM_CoA_mut_B12_BD meth 49.1 59 0.0013 25.0 5.8 19 208-226 70-88 (122)
89 COG2453 CDC14 Predicted protei 47.9 26 0.00056 29.1 3.8 32 173-217 100-133 (180)
90 PF03853 YjeF_N: YjeF-related 47.5 21 0.00046 29.3 3.2 35 176-222 23-57 (169)
91 PF05706 CDKN3: Cyclin-depende 46.6 16 0.00036 30.5 2.4 32 172-216 127-159 (168)
92 PF00782 DSPc: Dual specificit 45.6 31 0.00068 26.3 3.8 31 175-218 70-102 (133)
93 TIGR00197 yjeF_nterm yjeF N-te 45.1 51 0.0011 28.0 5.3 37 175-223 42-78 (205)
94 TIGR00640 acid_CoA_mut_C methy 44.9 42 0.00091 26.6 4.4 59 163-235 42-106 (132)
95 COG2519 GCD14 tRNA(1-methylade 44.8 27 0.00059 31.2 3.6 55 154-223 165-219 (256)
96 COG4822 CbiK Cobalamin biosynt 43.2 47 0.001 29.2 4.7 44 164-222 121-172 (265)
97 COG2185 Sbm Methylmalonyl-CoA 41.7 39 0.00084 27.5 3.8 45 173-227 58-102 (143)
98 PLN03049 pyridoxine (pyridoxam 41.0 41 0.00089 32.5 4.5 34 178-223 59-92 (462)
99 PRK07688 thiamine/molybdopteri 40.4 18 0.00039 33.4 1.9 41 91-132 275-322 (339)
100 PTZ00393 protein tyrosine phos 40.3 42 0.00091 29.7 4.1 31 175-218 167-198 (241)
101 PF02590 SPOUT_MTase: Predicte 40.0 36 0.00078 27.9 3.4 48 171-230 60-110 (155)
102 cd00079 HELICc Helicase superf 39.8 64 0.0014 23.8 4.7 39 174-227 24-62 (131)
103 PLN02918 pyridoxine (pyridoxam 39.5 45 0.00096 33.1 4.5 34 178-223 135-168 (544)
104 PRK12361 hypothetical protein; 37.9 29 0.00062 34.0 3.0 15 175-189 172-186 (547)
105 PRK12550 shikimate 5-dehydroge 37.5 69 0.0015 28.6 5.1 36 174-224 118-153 (272)
106 PRK10565 putative carbohydrate 36.9 67 0.0015 31.4 5.3 37 175-223 57-93 (508)
107 PF01488 Shikimate_DH: Shikima 36.5 55 0.0012 25.6 3.9 36 177-227 11-46 (135)
108 PF02302 PTS_IIB: PTS system, 36.4 51 0.0011 23.5 3.5 26 180-218 1-30 (90)
109 COG0514 RecQ Superfamily II DN 32.3 92 0.002 31.2 5.4 38 176-228 228-265 (590)
110 KOG1716 Dual specificity phosp 31.7 48 0.001 29.7 3.1 31 175-218 152-184 (285)
111 TIGR01587 cas3_core CRISPR-ass 31.4 60 0.0013 29.3 3.8 40 175-228 219-259 (358)
112 cd05567 PTS_IIB_mannitol PTS_I 29.8 77 0.0017 22.8 3.5 11 179-189 1-11 (87)
113 KOG0333 U5 snRNP-like RNA heli 29.6 61 0.0013 32.2 3.6 35 178-227 517-551 (673)
114 PRK11784 tRNA 2-selenouridine 29.6 1.4E+02 0.003 27.7 5.9 33 95-127 152-187 (345)
115 TIGR00853 pts-lac PTS system, 28.2 84 0.0018 23.4 3.5 38 178-230 3-44 (95)
116 TIGR00342 thiazole biosynthesi 26.7 1.1E+02 0.0023 28.6 4.6 29 105-133 139-169 (371)
117 PRK00103 rRNA large subunit me 26.6 79 0.0017 26.0 3.3 47 172-230 61-110 (157)
118 PTZ00110 helicase; Provisional 26.3 1.1E+02 0.0023 30.1 4.7 37 177-228 376-412 (545)
119 TIGR02190 GlrX-dom Glutaredoxi 25.9 1.5E+02 0.0032 20.7 4.3 31 175-218 4-34 (79)
120 KOG0685 Flavin-containing amin 25.7 1E+02 0.0022 30.1 4.3 35 177-226 20-54 (498)
121 PRK08384 thiamine biosynthesis 25.0 1E+02 0.0022 29.1 4.2 26 179-218 181-206 (381)
122 PRK04837 ATP-dependent RNA hel 24.5 89 0.0019 29.2 3.7 37 177-228 254-290 (423)
123 PRK11192 ATP-dependent RNA hel 24.4 1E+02 0.0022 28.8 4.2 37 177-228 244-280 (434)
124 KOG0352 ATP-dependent DNA heli 23.5 53 0.0012 31.9 2.0 44 180-238 257-309 (641)
125 PRK04537 ATP-dependent RNA hel 23.4 91 0.002 30.8 3.7 38 176-228 255-292 (572)
126 TIGR00614 recQ_fam ATP-depende 23.2 83 0.0018 30.0 3.3 37 177-228 225-261 (470)
127 PRK11057 ATP-dependent DNA hel 22.6 88 0.0019 31.1 3.5 38 176-228 234-271 (607)
128 PRK01565 thiamine biosynthesis 22.6 1.2E+02 0.0026 28.4 4.2 28 177-218 175-202 (394)
129 PRK09426 methylmalonyl-CoA mut 22.6 90 0.002 32.0 3.5 52 162-227 621-672 (714)
130 cd00133 PTS_IIB PTS_IIB: subun 22.2 92 0.002 21.0 2.6 22 180-214 1-22 (84)
131 PRK12548 shikimate 5-dehydroge 22.1 1.8E+02 0.0039 25.9 5.1 21 204-224 137-157 (289)
132 PF07755 DUF1611: Protein of u 22.0 1.9E+02 0.0041 26.5 5.2 30 203-233 128-157 (301)
133 PRK09590 celB cellobiose phosp 21.9 1.1E+02 0.0023 23.4 3.1 37 179-230 2-42 (104)
134 KOG1720 Protein tyrosine phosp 21.6 1.4E+02 0.0029 26.2 3.9 41 165-218 136-176 (225)
135 PF04343 DUF488: Protein of un 20.9 80 0.0017 24.3 2.2 20 97-116 2-22 (122)
136 PF06110 DUF953: Eukaryotic pr 20.8 70 0.0015 25.1 1.9 44 187-236 33-78 (119)
137 cd03029 GRX_hybridPRX5 Glutare 20.8 1.8E+02 0.0039 19.6 3.9 26 180-218 2-27 (72)
138 cd05565 PTS_IIB_lactose PTS_II 20.7 1.1E+02 0.0023 23.2 2.8 36 180-230 2-41 (99)
139 PRK10310 PTS system galactitol 20.4 1.4E+02 0.003 22.1 3.4 37 180-230 4-44 (94)
140 PRK12749 quinate/shikimate deh 20.4 2E+02 0.0043 25.9 4.9 21 204-224 135-155 (288)
141 smart00404 PTPc_motif Protein 20.3 1.6E+02 0.0036 20.7 3.8 14 177-190 38-51 (105)
142 smart00012 PTPc_DSPc Protein t 20.3 1.6E+02 0.0036 20.7 3.8 14 177-190 38-51 (105)
143 PRK11776 ATP-dependent RNA hel 20.0 1.1E+02 0.0024 28.9 3.5 36 178-228 242-277 (460)
No 1
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.6e-23 Score=163.12 Aligned_cols=116 Identities=36% Similarity=0.554 Sum_probs=103.0
Q ss_pred hccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264 90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 169 (241)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (241)
..+..++.++++.+++.+++++||||.++||.+||||.+||||+..... .+..++++|+++
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-------------------~~~l~~~eF~kq 80 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPG-------------------AGALKNPEFLKQ 80 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEecccccccc-------------------ccccCCHHHHHH
Confidence 4566899999999999989999999999999999999999999976543 234568999999
Q ss_pred hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcc
Q 026264 170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 238 (241)
Q Consensus 170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~ 238 (241)
+-....+.++.|||+|.+|. |+..|...|..+||+||.+|.|||.+|.+.++|..
T Consensus 81 vg~~kp~~d~eiIf~C~SG~--------------Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 81 VGSSKPPHDKEIIFGCASGV--------------RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred hcccCCCCCCcEEEEeccCc--------------chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 65566677789999999998 99999999999999999999999999999998864
No 2
>PLN02160 thiosulfate sulfurtransferase
Probab=99.89 E-value=7.3e-23 Score=164.89 Aligned_cols=116 Identities=36% Similarity=0.558 Sum_probs=94.6
Q ss_pred ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCC--eeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264 91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 168 (241)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGA--inip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (241)
++..|+++++.++++. +.+|||||++.||..|||||| +|+|+..+... +....++|+.
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-------------------~~l~~~~~~~ 72 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-------------------GRVKNQEFLE 72 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-------------------cccCCHHHHH
Confidence 4678999999999876 468999999999999999999 89997543210 0111234544
Q ss_pred hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264 169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241 (241)
Q Consensus 169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~ 241 (241)
. ....++++++||+||++|. ||..++..|.+.||++|++|+|||.+|.+.|+|+++.|
T Consensus 73 ~-~~~~~~~~~~IivyC~sG~--------------RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 73 Q-VSSLLNPADDILVGCQSGA--------------RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred H-HHhccCCCCcEEEECCCcH--------------HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 4 3334678899999999998 99999999999999999999999999999999998754
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.88 E-value=2.1e-22 Score=155.20 Aligned_cols=101 Identities=30% Similarity=0.406 Sum_probs=85.6
Q ss_pred hccccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHh
Q 026264 90 KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 168 (241)
Q Consensus 90 ~~~~~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (241)
..+..|+++++.+.++++ +.+|||||++.||..||||||+|+|+..+... ++
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~---------------------------~~ 59 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR---------------------------VG 59 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH---------------------------HH
Confidence 345679999999998765 57899999999999999999999999766431 11
Q ss_pred hhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcc-eeEccccHHHHHhCC
Q 026264 169 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEE 234 (241)
Q Consensus 169 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~n-V~~l~GG~~~W~~~g 234 (241)
. ...+++++|||||++|. ||..++..|+..||+| |++|+||+.+|..+|
T Consensus 60 ~---l~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 60 E---LAPDPRTPIVVNCAGRT--------------RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred h---cCCCCCCeEEEECCCCc--------------hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1 22456789999999998 9999999999999988 999999999999876
No 4
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.88 E-value=1.7e-22 Score=155.46 Aligned_cols=103 Identities=29% Similarity=0.488 Sum_probs=91.0
Q ss_pred ccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264 91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 170 (241)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (241)
.++.|+++++.+.++.++.+|||||++.||..||||||+|+|+..+.. +
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~---------------------------~---- 51 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA---------------------------F---- 51 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH---------------------------H----
Confidence 356899999999997777899999999999999999999999876533 1
Q ss_pred hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264 171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 239 (241)
Q Consensus 171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~ 239 (241)
...++++++|+|||.+|. +|..++..|+..||+||++|+||+.+|.+.++|++.
T Consensus 52 -~~~~~~~~~ivv~c~~g~--------------~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 52 -MRQADFDTPVMVMCYHGN--------------SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred -HHhcCCCCCEEEEeCCCC--------------CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 123678899999999998 899999999999999999999999999999999875
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.88 E-value=1.1e-22 Score=154.53 Aligned_cols=99 Identities=30% Similarity=0.454 Sum_probs=83.1
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 173 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (241)
.|+++++.++++.++.+|||||++.||..||||||+|+|+..+.... ..+.+ ..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~------------------------~~~~~--~~ 56 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFP------------------------FWLDE--NL 56 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhH------------------------HHHHh--hh
Confidence 58999999999877899999999999999999999999998754310 11111 12
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
..+++++|||||++|. ||..++..|..+||+||++|+||+.+|.+
T Consensus 57 ~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 57 DLLKGKKVLMYCTGGI--------------RCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hhcCCCEEEEECCCch--------------hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 2478899999999998 99999999999999999999999999973
No 6
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.88 E-value=2.7e-22 Score=151.61 Aligned_cols=98 Identities=30% Similarity=0.413 Sum_probs=86.9
Q ss_pred ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 172 (241)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (241)
..|+++++.+.++.+ .+|||+|++.||..||||||+|+|+..+... .
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--------------------------------~ 48 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESE--------------------------------G 48 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccc--------------------------------c
Confidence 468999999998875 8999999999999999999999998865431 1
Q ss_pred cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264 173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 237 (241)
Q Consensus 173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~ 237 (241)
..++++++||+||++|. ++..++..|.+.||++|++|+||+.+|...|+|+
T Consensus 49 ~~~~~~~~iv~~c~~g~--------------~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 49 LPLVGANAIIFHCRSGM--------------RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred cCCCCCCcEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 23678899999999998 8999999999999999999999999999999985
No 7
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.86 E-value=1.7e-21 Score=148.51 Aligned_cols=104 Identities=32% Similarity=0.410 Sum_probs=84.0
Q ss_pred cHHHHHHHhc-CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcC
Q 026264 96 EAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ 174 (241)
Q Consensus 96 s~~el~~~l~-~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (241)
+++++.++++ .++.+|||+|++.||..||||||+|+|+..+.+.. .....+|.+.+....
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-------------------~~~~~~~~~~~~~~~ 62 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-------------------ALSEEEFEKKYGFPK 62 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-------------------CCCHHHHHHHhcccC
Confidence 5678888887 66799999999999999999999999998764310 011224444323345
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
++++++||+||++|. +|..+++.|..+||+||++|+||+.+|.+
T Consensus 63 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 63 PSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCCCeEEEECCCcH--------------HHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 678999999999987 99999999999999999999999999963
No 8
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.85 E-value=7.3e-21 Score=147.07 Aligned_cols=101 Identities=28% Similarity=0.455 Sum_probs=86.4
Q ss_pred ccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264 93 RSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 170 (241)
Q Consensus 93 ~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (241)
..|+++++.+++..+ +.+|||||++.||..||||||+|+|...+...
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------- 56 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN------------------------------- 56 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH-------------------------------
Confidence 469999999998753 58999999999999999999999998775421
Q ss_pred hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264 171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 237 (241)
Q Consensus 171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~ 237 (241)
....++++++|||||++|.+ .++..+++.|+..||+ |++|+||+.+|..+|+|+
T Consensus 57 ~~~~i~~~~~vvvyc~~g~~------------~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 57 ATAKLDKEKLFVVYCDGPGC------------NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred hhhcCCCCCeEEEEECCCCC------------chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 12457889999999998742 2799999999999995 999999999999999985
No 9
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.85 E-value=6.2e-21 Score=143.51 Aligned_cols=92 Identities=30% Similarity=0.395 Sum_probs=76.7
Q ss_pred ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 172 (241)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (241)
|+++++.++++++ +++|||||++.||..||||||+|+|+..+.... ..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~---------------------------~~--- 50 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQET---------------------------DH--- 50 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHH---------------------------HH---
Confidence 5788999988764 578999999999999999999999987654311 00
Q ss_pred cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
....++++||+||.+|. ||..++..|+..||+ |++|+||+.+|.
T Consensus 51 ~~~~~~~~iv~~c~~G~--------------rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 51 FAPVRGARIVLADDDGV--------------RADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred hcccCCCeEEEECCCCC--------------hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 01124789999999998 999999999999998 999999999996
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.85 E-value=5.9e-21 Score=158.14 Aligned_cols=116 Identities=23% Similarity=0.282 Sum_probs=88.1
Q ss_pred hccccccHHHHHHHhcCCCeEEEEcCChh----hhhhC---------CCCCCeeechhhHHhhhhhHHHHHHhhhhhccc
Q 026264 90 KRVRSVEAKEALRLQKENNFVILDVRPEA----EFKEA---------HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 156 (241)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~----Ey~~g---------hIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~ 156 (241)
..+..|+++|+.+++++++.+|||||++. ||..| |||||+|+|+.....-
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l----------------- 95 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNL----------------- 95 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCC-----------------
Confidence 44568999999999988889999999865 46544 9999999996422110
Q ss_pred cCCCCCChHHHhhhhhc-CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCC
Q 026264 157 FSGTEENPEFLQTGVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL 235 (241)
Q Consensus 157 ~~~~~~~~~~~~~~~~~-~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~ 235 (241)
. ....+.|.+.+... ..+++++||+||++|. .+|..+++.|+.+||+||++|+||+.+|..+|+
T Consensus 96 -~-~~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~-------------~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~ 160 (162)
T TIGR03865 96 -A-PAWQAYFRRGLERATGGDKDRPLVFYCLADC-------------WMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGL 160 (162)
T ss_pred -C-CchhHHHHHHHHHhcCCCCCCEEEEEECCCC-------------HHHHHHHHHHHhcCCcceEEecCCHHHHHHcCC
Confidence 0 00111233331122 2379999999999986 389999999999999999999999999999999
Q ss_pred Cc
Q 026264 236 PE 237 (241)
Q Consensus 236 p~ 237 (241)
|+
T Consensus 161 Pv 162 (162)
T TIGR03865 161 PL 162 (162)
T ss_pred CC
Confidence 85
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.85 E-value=4.9e-21 Score=145.12 Aligned_cols=98 Identities=28% Similarity=0.446 Sum_probs=80.9
Q ss_pred ccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264 95 VEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 173 (241)
Q Consensus 95 Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (241)
|+++++.++++++ +.+|||||++.||..||||||+|+|+..+...+. +..+. ...
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~-----------------------~~~~~-~~~ 56 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFL-----------------------EIEED-ILD 56 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHH-----------------------HhhHH-HHh
Confidence 5788999988764 6899999999999999999999999987654210 00011 224
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
.++++++|||||.+|. ||..++..|+..||+ +++|.||+.+|.
T Consensus 57 ~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 57 QLPDDQEVTVICAKEG--------------SSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred hCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 4688999999999998 999999999999998 999999999996
No 12
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.85 E-value=6.9e-21 Score=144.07 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=82.0
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhh-hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264 95 VEAKEALRLQKENNFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 173 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~Ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (241)
|+++++.+++++++.+|||+|++.+| ..||||||+|+|+..+.... .+ ...+ ...
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~-~~-------------------~~~~----~~~ 56 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWA-DP-------------------DSPY----HKP 56 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhc-Cc-------------------cccc----ccc
Confidence 57889999888778999999999998 57999999999986643210 00 0000 123
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 234 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g 234 (241)
.++++++|||||++|. +|..+++.|..+||++|++|+||+.+|..+|
T Consensus 57 ~~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 57 AFAEDKPFVFYCASGW--------------RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 5788999999999987 8999999999999999999999999998765
No 13
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.84 E-value=1.5e-20 Score=149.33 Aligned_cols=121 Identities=31% Similarity=0.417 Sum_probs=83.3
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHH----hhhhhccccCCCCCChHHHhhh
Q 026264 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQTG 170 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 170 (241)
|+++|+.++++ ++.+|||||++.||..||||||+|||+..+..........+. .+...+..+. ..+.+++++..
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV-SGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 67899999887 578999999999999999999999999654321100000000 0000000000 01223444431
Q ss_pred hhcCCCCCCeEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264 171 VESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 171 ~~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
...+++++++|||||+ +|. ||.++++.|+.+|| +|++|+||+.+|..
T Consensus 79 ~~~~i~~~~~vvvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 WEARLERDPKLLIYCARGGM--------------RSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHhccCCCCeEEEEeCCCCc--------------cHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 2247899999999997 455 99999999999999 69999999999975
No 14
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.84 E-value=1.2e-20 Score=141.22 Aligned_cols=91 Identities=32% Similarity=0.473 Sum_probs=80.5
Q ss_pred ccHHHHHHHhcC-CCeEEEEcCChhhhhh--CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264 95 VEAKEALRLQKE-NNFVILDVRPEAEFKE--AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 171 (241)
Q Consensus 95 Is~~el~~~l~~-~~~~lIDvR~~~Ey~~--ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (241)
|+++++.+.++. .+++|||||++.||.. ||||||+|+|+..+.. .
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~--------------------------------~ 49 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDD--------------------------------W 49 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHH--------------------------------H
Confidence 678899888876 4699999999999999 9999999999986643 1
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
...++++++|||||.+|. +|..++..|+..||++|++|+||+.+|.
T Consensus 50 ~~~~~~~~~ivv~c~~g~--------------~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 50 LGDLDRDRPVVVYCYHGN--------------SSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred HhhcCCCCCEEEEeCCCC--------------hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 134678999999999887 9999999999999999999999999996
No 15
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.84 E-value=1.9e-20 Score=146.61 Aligned_cols=114 Identities=25% Similarity=0.271 Sum_probs=88.9
Q ss_pred ccHHHHHHHhcCCCeEEEEcCCh-------hhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH
Q 026264 95 VEAKEALRLQKENNFVILDVRPE-------AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~-------~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (241)
|+++++.+++.+++.+|||+|++ .+|..||||||+|+|+..+..... ...|.+. +..+|.
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~----------~~~~~~~---~~~~~~ 68 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS----------PGPHMLP---SPEEFA 68 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC----------CCCCCCC---CHHHHH
Confidence 78899999998778999999999 999999999999999987654210 0111111 122333
Q ss_pred hhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264 168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 234 (241)
Q Consensus 168 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g 234 (241)
+.....+++++++|||||++|+ .+|..+++.|+.+||++|++|+||+.+|..+|
T Consensus 69 ~~~~~~~~~~~~~vv~~c~~g~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 69 ELLGSLGISNDDTVVVYDDGGG-------------FFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HHHHHcCCCCCCEEEEECCCCC-------------ccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 3323357889999999999963 18999999999999999999999999999875
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.84 E-value=1.2e-20 Score=148.62 Aligned_cols=110 Identities=29% Similarity=0.425 Sum_probs=88.8
Q ss_pred cccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhh
Q 026264 92 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 170 (241)
Q Consensus 92 ~~~Is~~el~~~l~~-~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (241)
+..|+++++.+++++ .+++|||||++.||..||||||+|+|+..+.+.... .+.. ..
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~--------------------~~~~-~~- 64 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAE--------------------LKSL-QE- 64 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhh--------------------hhhh-hh-
Confidence 457999999998876 578999999999999999999999999886542100 0000 00
Q ss_pred hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCC-cceeEccccHHHHHhCCCCc
Q 026264 171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY-KNVYHLEGGLYKWFKEELPE 237 (241)
Q Consensus 171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy-~nV~~l~GG~~~W~~~g~p~ 237 (241)
....++++++||+||++|. ||..++..|+..|| ++|++|+||+.+|.....+.
T Consensus 65 ~~~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 65 LPLDNDKDSPIYVVCRRGN--------------DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred cccccCCCCcEEEECCCCC--------------cHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 2245688999999999998 99999999999999 69999999999999876553
No 17
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.84 E-value=1.4e-20 Score=143.00 Aligned_cols=96 Identities=29% Similarity=0.548 Sum_probs=81.0
Q ss_pred ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 172 (241)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (241)
|+++++.++++.+ +.+|||+|++.||..+|||||+|+|+..+.+. ++. .
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~---------------------------~~~-~- 52 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER---------------------------SKE-L- 52 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH---------------------------HHH-h-
Confidence 7889999998865 58999999999999999999999999765431 111 1
Q ss_pred cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
...+++++||+||++|. ||..++..|.+.||++|++|+||+.+|...
T Consensus 53 ~~~~~~~~vv~~c~~g~--------------rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 53 DSDNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred cccCCCCeEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 11256899999999987 999999999999999999999999999754
No 18
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.83 E-value=2.2e-20 Score=139.13 Aligned_cols=89 Identities=37% Similarity=0.569 Sum_probs=77.3
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcC
Q 026264 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ 174 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (241)
++++++.+++ .++.+|||+|++.+|..||||||+|+|+..+.. ....
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~--------------------------------~~~~ 47 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRD--------------------------------RLNE 47 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHH--------------------------------HHHh
Confidence 4678888888 457889999999999999999999999876543 1123
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
++++++||+||++|. ++..++..|++.|| +|++|+||+.+|+
T Consensus 48 ~~~~~~vvl~c~~g~--------------~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 48 LPKDKEIIVYCAVGL--------------RGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred cCCCCcEEEEcCCCh--------------hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 677889999999987 89999999999999 8999999999996
No 19
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.83 E-value=3.2e-20 Score=137.40 Aligned_cols=98 Identities=38% Similarity=0.627 Sum_probs=79.3
Q ss_pred CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcC
Q 026264 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA 186 (241)
Q Consensus 107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~ 186 (241)
++++|||+|++.||..||||||+|+|+..+....... ....+.+......++++++|||||.
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~iv~~c~ 64 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGEL------------------DILEFEELLKRLGLDKDKPVVVYCR 64 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCc------------------CHHHHHHHHHHcCCCCCCeEEEEeC
Confidence 4789999999999999999999999998765421100 0112222224467889999999998
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCC
Q 026264 187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 236 (241)
Q Consensus 187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p 236 (241)
+|. ++..+++.|+++||++|++|+||+.+|...|.|
T Consensus 65 ~g~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 65 SGN--------------RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CCc--------------HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 887 999999999999999999999999999998865
No 20
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.83 E-value=2.4e-20 Score=142.07 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=78.6
Q ss_pred ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 172 (241)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (241)
|+++++.++++++ +++|||||++.||..||||||+|+|+..+...... +........+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~--------------~~~~~~~~~~~----- 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGE--------------LEQLPTVPRLE----- 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccc--------------cccccchHHHH-----
Confidence 6789999998763 68999999999999999999999999876421000 00000001111
Q ss_pred cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
..++++||+||.+|. +|..+++.|+..||++|++|+||+.+|+
T Consensus 62 --~~~~~~vv~~c~~g~--------------~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 62 --NYKGKIIVIVSHSHK--------------HAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred --hhcCCeEEEEeCCCc--------------cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 124789999999998 8999999999999999999999999995
No 21
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.83 E-value=2e-20 Score=145.35 Aligned_cols=105 Identities=30% Similarity=0.491 Sum_probs=84.1
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhh-----------CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264 95 VEAKEALRLQKENNFVILDVRPEAEFKE-----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~-----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
|+++++.++++.++.+|||||++.||.. ||||||+|+|+..+.... +.+ .+
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--------------~~~----~~ 62 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--------------GTF----KS 62 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--------------CCc----CC
Confidence 5788899988766799999999999987 999999999998764311 111 12
Q ss_pred h-HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 164 P-EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 164 ~-~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
+ +|.+.+...+++++++||+||++|. +|.++++.|+.+||++|++|+||+.+|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~iv~yc~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 63 PEELRALFAALGITPDKPVIVYCGSGV--------------TACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 2 3322223346789999999999987 9999999999999999999999999996
No 22
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.82 E-value=2.9e-20 Score=145.60 Aligned_cols=103 Identities=32% Similarity=0.483 Sum_probs=84.6
Q ss_pred ccHHHHHHHhcC-CCeEEEEcCChhhhh-hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhh
Q 026264 95 VEAKEALRLQKE-NNFVILDVRPEAEFK-EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE 172 (241)
Q Consensus 95 Is~~el~~~l~~-~~~~lIDvR~~~Ey~-~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (241)
|+++++.+++++ ++.+|||||++.||. .||||||+|+|+..+... .....|... ..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~---------------------~~~~~~~~~-l~ 58 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM---------------------EINPNFLAE-LE 58 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc---------------------ccCHHHHHH-HH
Confidence 578899999887 479999999999999 999999999999876431 011233333 22
Q ss_pred cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
..++++++||+||++|. +|..++..|++.||+||+.|.||+.+|.+.
T Consensus 59 ~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 59 EKVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred hhCCCCCeEEEEcCCCc--------------cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 33478899999999997 999999999999999999999999999765
No 23
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.82 E-value=1e-19 Score=165.60 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=96.8
Q ss_pred ccccHHHHHHHhcCCCeEEEEcC--------C-hhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264 93 RSVEAKEALRLQKENNFVILDVR--------P-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (241)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR--------~-~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
..|++++|.+++++++++|||+| + ..+|..||||||+|+++..+.+.... ..+.+ +..
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~----------~~~~l---p~~ 88 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD----------LPHML---PSE 88 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC----------cCCCC---CCH
Confidence 36999999999988889999996 3 37899999999999998765432100 01111 223
Q ss_pred hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264 164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240 (241)
Q Consensus 164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g 240 (241)
.+|.+.+...++.++++|||||..|. ..+.++++.|+.+||+||++|+||+.+|..+|+|++++
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~-------------~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGI-------------FSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCc-------------chHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 45555545578999999999999886 26788999999999999999999999999999999875
No 24
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.82 E-value=6.2e-20 Score=144.87 Aligned_cols=99 Identities=25% Similarity=0.390 Sum_probs=80.3
Q ss_pred ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhh-HHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264 93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYR-LIKEWTAWDIARRAAFAFFGIFSGTEENPE 165 (241)
Q Consensus 93 ~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (241)
..|+++++.+++.++ +++|||||++.||..||||||+|+|+.. +....
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~------------------------- 56 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFF------------------------- 56 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHH-------------------------
Confidence 469999999998753 6899999999999999999999999863 33211
Q ss_pred HHhhhhhcCCCCCCeEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHc------------CCcceeEccccHHHHH
Q 026264 166 FLQTGVESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF 231 (241)
Q Consensus 166 ~~~~~~~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------Gy~nV~~l~GG~~~W~ 231 (241)
.+......++++++|||||. +|. ||..+++.|+.. ||.+|++|+||+.+|.
T Consensus 57 -~~~~~~~~~~~~~~vv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 57 -LDKPGVASKKKRRVLIFHCEFSSK--------------RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred -HHhhcccccCCCCEEEEECCCccc--------------cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 00001124789999999997 777 999999999985 9999999999999985
No 25
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.82 E-value=6e-20 Score=139.97 Aligned_cols=107 Identities=32% Similarity=0.553 Sum_probs=80.3
Q ss_pred cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCC
Q 026264 96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQL 175 (241)
Q Consensus 96 s~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (241)
+++|+.+++++++++|||||++.+|..||||||+|+|+..+........ .....++... ....+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~ 64 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLS---------------EDKLDEFLKE-LGKKI 64 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCH---------------HHHHHHHHHH-HTHGS
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccc---------------cccccccccc-ccccc
Confidence 5789999996679999999999999999999999999966511000000 0001222333 44567
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHH-----HHHcCCcceeEccccHHHHHh
Q 026264 176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL-----LVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~-----L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
+++++|||||..|. ++..++.. |..+||++|++|+|||.+|.+
T Consensus 65 ~~~~~iv~yc~~~~--------------~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 65 DKDKDIVFYCSSGW--------------RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp TTTSEEEEEESSSC--------------HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred cccccceeeeeccc--------------ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 88899999998876 67666665 889999999999999999986
No 26
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.82 E-value=1.3e-19 Score=162.02 Aligned_cols=121 Identities=22% Similarity=0.259 Sum_probs=95.4
Q ss_pred cccHHHHHHHhcCCCeEEEEcCC----------hhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264 94 SVEAKEALRLQKENNFVILDVRP----------EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~----------~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
.|+++++.+.+++++++|||+|+ +.+|..||||||+|+|+..+..... .+.+.+ ...
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~----------~~~~~~---~~~ 72 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS----------PLPHMM---PRP 72 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC----------CCCCCC---CCH
Confidence 58999999999888899999996 6889999999999999876533110 000111 112
Q ss_pred hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264 164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240 (241)
Q Consensus 164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g 240 (241)
.+|.+.+...+++++++|||||.++. ..+.++++.|..+||+||++|+||+.+|.++|+|++++
T Consensus 73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 136 (281)
T PRK11493 73 ETFAVAMRELGVNQDKHLVVYDEGNL-------------FSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG 136 (281)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCC-------------chHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence 34444434578999999999999876 25778899999999999999999999999999999876
No 27
>PRK01415 hypothetical protein; Validated
Probab=99.82 E-value=8.1e-20 Score=160.51 Aligned_cols=135 Identities=24% Similarity=0.342 Sum_probs=109.2
Q ss_pred EeecCchhhhHhhhccCCCCCCccccCCCCCCCCCCCccchHHHHHHHhhhccccccHHHHHHHhcCCCeEEEEcCChhh
Q 026264 40 CLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAE 119 (241)
Q Consensus 40 ~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~E 119 (241)
+.....|..++.|++...+..|+.- . .|.... -..|+++++.+++++++++|||||++.|
T Consensus 79 ~~~~~~F~~l~vr~k~eiV~~g~~~--~--~~~~~~----------------g~~i~p~e~~~ll~~~~~vvIDVRn~~E 138 (247)
T PRK01415 79 YSDVHPFQKLKVRLKKEIVAMNVDD--L--NVDLFK----------------GEYIEPKDWDEFITKQDVIVIDTRNDYE 138 (247)
T ss_pred cccCCCCCccEEEeeceEEecCCCC--C--CccccC----------------ccccCHHHHHHHHhCCCcEEEECCCHHH
Confidence 3456778899999999999999752 1 122111 2579999999999988999999999999
Q ss_pred hhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCC
Q 026264 120 FKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 199 (241)
Q Consensus 120 y~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~ 199 (241)
|..||||||+|+|+..+.+ .+++++. ...++++++|++||.+|.
T Consensus 139 ~~~Ghi~gAinip~~~f~e------------------------~~~~~~~--~~~~~k~k~Iv~yCtgGi---------- 182 (247)
T PRK01415 139 VEVGTFKSAINPNTKTFKQ------------------------FPAWVQQ--NQELLKGKKIAMVCTGGI---------- 182 (247)
T ss_pred HhcCCcCCCCCCChHHHhh------------------------hHHHHhh--hhhhcCCCeEEEECCCCh----------
Confidence 9999999999999877643 1222211 234678999999999998
Q ss_pred chhhHHHHHHHHHHHcCCcceeEccccHHHHHhCC
Q 026264 200 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 234 (241)
Q Consensus 200 ~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g 234 (241)
||..++..|++.||++|++|.||+.+|.+..
T Consensus 183 ----Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 183 ----RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred ----HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 9999999999999999999999999999763
No 28
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.81 E-value=1.2e-19 Score=147.77 Aligned_cols=95 Identities=26% Similarity=0.339 Sum_probs=80.5
Q ss_pred HHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCC
Q 026264 100 ALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKD 178 (241)
Q Consensus 100 l~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 178 (241)
+.+++.++ +++|||||++.+|..||||||+|+|...+.. ....++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~--------------------------------~l~~l~~~ 49 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQ--------------------------------ALEKLPAA 49 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHH--------------------------------HHHhcCCC
Confidence 34445443 5899999999999999999999999876543 12335678
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g 240 (241)
++|||||.+|. +|..++..|+..||++|++|+||+.+|...|+|++++
T Consensus 50 ~~vVv~c~~g~--------------~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 50 ERYVLTCGSSL--------------LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred CCEEEEeCCCh--------------HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence 89999999986 8999999999999999999999999999999999875
No 29
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.80 E-value=4.1e-19 Score=143.43 Aligned_cols=109 Identities=26% Similarity=0.385 Sum_probs=85.6
Q ss_pred ccHHHHHHHhc----CCCeEEEEcCCh--------hhhhh------------CCCCCCeeechhhHHhhhhhHHHHHHhh
Q 026264 95 VEAKEALRLQK----ENNFVILDVRPE--------AEFKE------------AHPPGAINVQIYRLIKEWTAWDIARRAA 150 (241)
Q Consensus 95 Is~~el~~~l~----~~~~~lIDvR~~--------~Ey~~------------ghIpGAinip~~~l~~~~~~~~~~~~~~ 150 (241)
|+++++.+.++ .++++|||+|.. .+|.. ||||||+|+|+..+....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~---------- 70 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEA---------- 70 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcC----------
Confidence 57889999987 457999999987 88998 999999999987654311
Q ss_pred hhhccccCCCC-CChHHHhhhhhcCCCCCCeEEEEcCC---CCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEcccc
Q 026264 151 FAFFGIFSGTE-ENPEFLQTGVESQLDKDAKIIVACAT---GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 226 (241)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~IVvyC~~---G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG 226 (241)
+.+.... ...+|.+.+...+++++++||+||+. |. .|.++++.|+.+|++||++|+||
T Consensus 71 ----~~~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~--------------~A~r~~~~l~~~G~~~v~ildGG 132 (138)
T cd01445 71 ----GFEESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGF--------------TACHIALAARLCGHPDVAILDGG 132 (138)
T ss_pred ----CCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcch--------------HHHHHHHHHHHcCCCCeEEeCCC
Confidence 1111111 22355555455799999999999986 44 89999999999999999999999
Q ss_pred HHHHH
Q 026264 227 LYKWF 231 (241)
Q Consensus 227 ~~~W~ 231 (241)
+.+|+
T Consensus 133 ~~~W~ 137 (138)
T cd01445 133 FFEWF 137 (138)
T ss_pred HHHhh
Confidence 99996
No 30
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.80 E-value=2.3e-19 Score=135.04 Aligned_cols=86 Identities=28% Similarity=0.395 Sum_probs=70.7
Q ss_pred CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEc
Q 026264 106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVAC 185 (241)
Q Consensus 106 ~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC 185 (241)
+++.+|||||++.||..||||||+|+|+..+... .+.++. ...++++++||+||
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~------------------------~~~~~~--~~~~~~~~~ivv~c 63 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR------------------------SQELQA--LEAPGRATRYVLTC 63 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC------------------------HHHHHH--hhcCCCCCCEEEEe
Confidence 3478999999999999999999999998755321 111111 12357889999999
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 186 ATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 186 ~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
.+|. ++..++..|+..||+||++|+||+.+|.
T Consensus 64 ~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 95 (96)
T cd01529 64 DGSL--------------LARFAAQELLALGGKPVALLDGGTSAWV 95 (96)
T ss_pred CChH--------------HHHHHHHHHHHcCCCCEEEeCCCHHHhc
Confidence 9987 8999999999999999999999999996
No 31
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=3.9e-19 Score=133.30 Aligned_cols=88 Identities=33% Similarity=0.423 Sum_probs=70.5
Q ss_pred HhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEE
Q 026264 103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII 182 (241)
Q Consensus 103 ~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IV 182 (241)
+++.++++|||+|++.||..||||||+|+|+..+.... .....+++++||
T Consensus 5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~------------------------------~~~~~~~~~~iv 54 (92)
T cd01532 5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA------------------------------WVRIPRRDTPIV 54 (92)
T ss_pred hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh------------------------------HhhCCCCCCeEE
Confidence 34556799999999999999999999999987653210 111124588999
Q ss_pred EEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264 183 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 183 vyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
|||.+|.. ..|..+++.|+..||++|++|+||+.+|.+
T Consensus 55 l~c~~G~~------------~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 55 VYGEGGGE------------DLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred EEeCCCCc------------hHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 99999871 126899999999999999999999999973
No 32
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.79 E-value=3.4e-19 Score=130.22 Aligned_cols=88 Identities=42% Similarity=0.638 Sum_probs=75.6
Q ss_pred HHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCC
Q 026264 100 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA 179 (241)
Q Consensus 100 l~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 179 (241)
+...++.++.+|||+|++.||..||||||+|+|+..+.... ....+++++
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~------------------------------~~~~~~~~~ 51 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------------------------ALLELDKDK 51 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH------------------------------HhhccCCCC
Confidence 34445566899999999999999999999999998765421 124578999
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
+|||||..|. ++..+++.|+..||++|++|+||+.+|.
T Consensus 52 ~vv~~c~~~~--------------~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 52 PIVVYCRSGN--------------RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred eEEEEeCCCc--------------hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999987 9999999999999999999999999994
No 33
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=6.6e-19 Score=157.50 Aligned_cols=116 Identities=25% Similarity=0.403 Sum_probs=97.8
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhh----------CCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264 94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
.++.++++..++.+..+|||+|++.+|.. ||||||+|+|+..+.++. +. -+.
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~--------------~~----~~~ 218 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDG--------------GL----FKS 218 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCC--------------Cc----cCc
Confidence 57778888888888899999999999998 999999999999987731 11 123
Q ss_pred hHHHhhhh-hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC-CCCcccCC
Q 026264 164 PEFLQTGV-ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSEE 241 (241)
Q Consensus 164 ~~~~~~~~-~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~-g~p~~~g~ 241 (241)
++.++.+. ..+++++++||+||++|. +|...+..|+.+|+.++++|+|+|.+|... +.|+++|+
T Consensus 219 ~~~~~~l~~~~gi~~~~~vI~yCgsG~--------------~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 219 PEEIARLYADAGIDPDKEVIVYCGSGV--------------RASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcCCch--------------HHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 33443322 378999999999999998 999999999999999889999999999987 77999986
No 34
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.79 E-value=3.5e-19 Score=162.19 Aligned_cols=116 Identities=19% Similarity=0.292 Sum_probs=94.2
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC
Q 026264 94 SVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 162 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (241)
.++.+++.+.++.++.+|||+|++.|| ..||||||+|+|+..+.+.. +.+. .
T Consensus 191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~--------------~~~~---~ 253 (320)
T PLN02723 191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS--------------QTLL---P 253 (320)
T ss_pred eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC--------------CCCC---C
Confidence 378899999888778899999999998 46999999999998765421 1111 1
Q ss_pred ChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC-CCCcccC
Q 026264 163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE 240 (241)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~-g~p~~~g 240 (241)
..++.+.+...+++++++||+||++|. +|..+++.|+.+||+||++|+|||.+|... ++|+++|
T Consensus 254 ~~el~~~~~~~gi~~~~~iv~yC~sG~--------------~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 254 AEELKKRFEQEGISLDSPIVASCGTGV--------------TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 233333333467899999999999997 999999999999999999999999999986 7899876
No 35
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.79 E-value=4.4e-19 Score=158.55 Aligned_cols=115 Identities=27% Similarity=0.417 Sum_probs=91.9
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264 95 VEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
++.+++...++.++++|||+|++.||. .||||||+|+|+..+.+. +.+ ...
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~---------------~~~---~~~ 216 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---------------GEL---KTT 216 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC---------------CCc---CCH
Confidence 456677777776678999999999995 699999999999876531 001 112
Q ss_pred hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh-CCCCcccCC
Q 026264 164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSEE 241 (241)
Q Consensus 164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~-~g~p~~~g~ 241 (241)
.++.+.+...+++++++||+||++|. ||..+++.|+.+||+||++|+|||.+|.. .++|+++|.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~--------------~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~~ 281 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGV--------------TAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPAK 281 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCCC
Confidence 23333334467899999999999998 99999999999999999999999999998 699999873
No 36
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.79 E-value=7.7e-19 Score=171.94 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=97.5
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 173 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (241)
.|+++|+.+++++++++|||||++.+|..||||||+|+|+........ ...+++. ...+|.+.+...
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~----------~~~~~lp---~~~~l~~~l~~l 76 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKP----------PAPGLLP---DTADLEQLFGEL 76 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCC----------CCCCCCC---CHHHHHHHHHHc
Confidence 599999999999888999999999999999999999999865322100 0112221 123444444557
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g 240 (241)
+++++++|||||+.|. .+|.++++.|+.+||++|++|+||+.+|..+|+|++++
T Consensus 77 GI~~d~~VVvYd~~g~-------------~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~ 130 (610)
T PRK09629 77 GHNPDAVYVVYDDEGG-------------GWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD 130 (610)
T ss_pred CCCCCCEEEEECCCCC-------------chHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence 8899999999999886 28889999999999999999999999999999998765
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.79 E-value=7e-19 Score=163.37 Aligned_cols=104 Identities=29% Similarity=0.414 Sum_probs=90.1
Q ss_pred cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 171 (241)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (241)
+..|+++++.+++++ +.+|||||++.||..||||||+|+|+..+... +.
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~---------------------------~~--- 50 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELR---------------------------IE--- 50 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHH---------------------------Hh---
Confidence 467999999999876 58999999999999999999999998765431 11
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g 240 (241)
...++++++||+||++|. ||..+++.|+..||+||++|+||+.+|...|+|++++
T Consensus 51 ~~~~~~~~~IvvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 51 THLPDRDREIVLICASGT--------------RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred hhcCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 122478899999999987 9999999999999999999999999999999998865
No 38
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.78 E-value=9e-19 Score=135.85 Aligned_cols=102 Identities=22% Similarity=0.335 Sum_probs=79.6
Q ss_pred cccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264 92 VRSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 169 (241)
Q Consensus 92 ~~~Is~~el~~~l~~--~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (241)
++.|+++++.+++.. ++.+|||||++ ||..||||||+|+|+..+.... .++.+.
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~-----------------------~~~~~~ 56 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL-----------------------NQLVQL 56 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH-----------------------HHHHHH
Confidence 357999999999876 35789999999 9999999999999998764321 122221
Q ss_pred hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH--------cCCcceeEccccHHHHHhC
Q 026264 170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~--------~Gy~nV~~l~GG~~~W~~~ 233 (241)
.+.+++++|||||..++ .|+..++..|.+ .||.||++|+||+.+|.+.
T Consensus 57 ---~~~~~~~~iv~yC~~~~-------------~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 57 ---LSGSKKDTVVFHCALSQ-------------VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred ---HhcCCCCeEEEEeecCC-------------cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 23477889999998443 288888877654 4999999999999999864
No 39
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.1e-18 Score=133.08 Aligned_cols=101 Identities=40% Similarity=0.588 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCCeEEEEcCChhhhhhCCCCC-CeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCC
Q 026264 97 AKEALRLQKENNFVILDVRPEAEFKEAHPPG-AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQL 175 (241)
Q Consensus 97 ~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpG-Ainip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (241)
..........++.+|||||++.||..+|||| ++|+|...+.... .. ...
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~---------------------------~~---~~~ 58 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAE---------------------------NL---LEL 58 (110)
T ss_pred HHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhh---------------------------cc---ccc
Confidence 3334444455689999999999999999999 9999999876521 00 015
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccCC
Q 026264 176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 241 (241)
Q Consensus 176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g~ 241 (241)
+++++|||||.+|. ||..++..|+++||++++.+.||+.+|...++|++.++
T Consensus 59 ~~~~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~~ 110 (110)
T COG0607 59 PDDDPIVVYCASGV--------------RSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY 110 (110)
T ss_pred CCCCeEEEEeCCCC--------------ChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccCC
Confidence 78999999999998 99999999999999988999999999999999998764
No 40
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.77 E-value=2.3e-18 Score=152.52 Aligned_cols=102 Identities=31% Similarity=0.477 Sum_probs=84.0
Q ss_pred cccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264 92 VRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE 165 (241)
Q Consensus 92 ~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (241)
...|+++++.+++++. +.+|||||++.||..||||||+|+|+..+.+ + +.
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-~-----------------------~~ 164 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-F-----------------------PE 164 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-h-----------------------HH
Confidence 4679999999888652 4899999999999999999999999977643 1 12
Q ss_pred HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
+++. ....+ ++++||+||++|. ||..|+..|++.||+||++|+||+.+|.+.
T Consensus 165 ~l~~-~~~~~-kdk~IvvyC~~G~--------------Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 165 ALAA-HRADL-AGKTVVSFCTGGI--------------RCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred HHHh-hhhhc-CCCeEEEECCCCH--------------HHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 2222 11223 7889999999998 999999999999999999999999999875
No 41
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.75 E-value=5.5e-18 Score=154.03 Aligned_cols=102 Identities=26% Similarity=0.435 Sum_probs=86.9
Q ss_pred cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 171 (241)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (241)
...|+++++.+++++++++|||||++.||..||||||+|+|+..+.+. +..+++
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~------------------------~~~l~~-- 164 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF------------------------PPWVEE-- 164 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh------------------------HHHHHH--
Confidence 357999999999988889999999999999999999999999876531 112211
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
.....++++||+||++|. ||..++.+|+..||+||++|+||+.+|.+.
T Consensus 165 ~~~~~kdk~IvvyC~~G~--------------Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 165 NLDPLKDKKVVMYCTGGI--------------RCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred hcCCCCcCeEEEECCCCc--------------HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 123558899999999998 999999999999999999999999999875
No 42
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.74 E-value=1e-17 Score=128.48 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=68.3
Q ss_pred CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcC
Q 026264 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA 186 (241)
Q Consensus 107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~ 186 (241)
....+||+|++.||..||||||+|+|+.++.... .....+++++|||||.
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l------------------------------~~~~~~~~~~vvlyC~ 66 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHI------------------------------ATAVPDKNDTVKLYCN 66 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHH------------------------------HHhCCCCCCeEEEEeC
Confidence 3677999999999999999999999998764321 1122457789999999
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264 187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
+|. +|..++..|.+.||++|.++ ||+.+|.-
T Consensus 67 ~G~--------------rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 67 AGR--------------QSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred CCH--------------HHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 998 99999999999999999985 99999974
No 43
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.73 E-value=1.1e-17 Score=163.80 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=93.4
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264 94 SVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE 165 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (241)
.++.+++.+.+++++++|||+|++.||. .||||||+|+|+..+.+.. +.+.. .++
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~--------------~~lk~---~~e 210 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA--------------RNLRI---RQD 210 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC--------------CCCCC---HHH
Confidence 5789999999987789999999999995 7999999999997654321 11111 122
Q ss_pred HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC-CCCcccC
Q 026264 166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE 240 (241)
Q Consensus 166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~-g~p~~~g 240 (241)
+.+.+...+++++++||+||++|. +|..+++.|+.+||+||++|+|||.+|... ++|+++.
T Consensus 211 l~~~~~~~Gi~~~~~VVvYC~sG~--------------rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 211 MPEILRDLGITPDKEVITHCQTHH--------------RSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred HHHHHHHcCCCCCCCEEEECCCCh--------------HHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 222223467899999999999997 999999999999999999999999999975 7898863
No 44
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.73 E-value=1.8e-17 Score=128.68 Aligned_cols=99 Identities=23% Similarity=0.435 Sum_probs=74.3
Q ss_pred ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHH
Q 026264 93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 166 (241)
Q Consensus 93 ~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (241)
+.|+++++.++++++ +.+|||||++ ||..||||||+|+|+..+.... ++.
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-----------------------~~~ 57 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-----------------------PQV 57 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH-----------------------HHH
Confidence 468999999999875 5899999999 9999999999999998754321 111
Q ss_pred HhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH----cCC--cceeEccccHHHHH
Q 026264 167 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----NGY--KNVYHLEGGLYKWF 231 (241)
Q Consensus 167 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~----~Gy--~nV~~l~GG~~~W~ 231 (241)
++. ....+..+||+||.+++. |+..++.+|.. .|| .++++|+||+.+|.
T Consensus 58 ~~~---~~~~~~~~iv~~C~~~g~-------------rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 58 YAL---FSLAGVKLAIFYCGSSQG-------------RGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHH---hhhcCCCEEEEECCCCCc-------------ccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 111 112355789999997542 78777766543 475 68999999999995
No 45
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.9e-17 Score=146.13 Aligned_cols=122 Identities=24% Similarity=0.253 Sum_probs=99.5
Q ss_pred ccccHHHHHHHhcCC-----CeEEEEcCCh--hhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChH
Q 026264 93 RSVEAKEALRLQKEN-----NFVILDVRPE--AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE 165 (241)
Q Consensus 93 ~~Is~~el~~~l~~~-----~~~lIDvR~~--~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (241)
..|+++++.+.+..+ +..+++++.. .+|.++|||||++++++........ ..++ .++...
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~----------~~~~---lp~~e~ 77 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP----------LPHM---LPSPEQ 77 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC----------CCCC---CCCHHH
Confidence 469999999999865 5666666665 8999999999999999987653210 1122 233456
Q ss_pred HHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264 166 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240 (241)
Q Consensus 166 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g 240 (241)
|.+.+...+|..|.+||+|+..+. ..|.+++|.|+.+|++||++|+||+.+|.++|+|++++
T Consensus 78 fa~~~~~~GI~~d~tVVvYdd~~~-------------~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~ 139 (285)
T COG2897 78 FAKLLGELGIRNDDTVVVYDDGGG-------------FFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETE 139 (285)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC-------------eehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCC
Confidence 777667799999999999999887 38999999999999999999999999999999999865
No 46
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.72 E-value=2.5e-17 Score=127.07 Aligned_cols=81 Identities=25% Similarity=0.376 Sum_probs=67.8
Q ss_pred CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcC
Q 026264 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA 186 (241)
Q Consensus 107 ~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~ 186 (241)
.+-+|||+|++.||..||||||+|+|+..+... + .....+++++||+||.
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~---------------------------l---~~l~~~~~~~IVlyC~ 68 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKER---------------------------I---ATAVPDKNDTVKLYCN 68 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHHHHHHH---------------------------H---HhcCCCCCCeEEEEeC
Confidence 356799999999999999999999999865431 1 1123466789999999
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264 187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
+|. +|..++..|.+.||++|++ .||+.+|.-
T Consensus 69 ~G~--------------rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 69 AGR--------------QSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred CCh--------------HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 997 9999999999999999977 699999973
No 47
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.72 E-value=2.8e-17 Score=153.52 Aligned_cols=102 Identities=26% Similarity=0.433 Sum_probs=87.8
Q ss_pred ccccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264 91 RVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 169 (241)
Q Consensus 91 ~~~~Is~~el~~~l~~~-~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (241)
....|+++++.++++++ +++|||||++.||..||||||+|+|+..+....
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~----------------------------- 335 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE----------------------------- 335 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh-----------------------------
Confidence 34679999999998764 578999999999999999999999998764311
Q ss_pred hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCC
Q 026264 170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 236 (241)
Q Consensus 170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p 236 (241)
....++++++||+||++|. ||..++..|++.||++|++|+||+.+|..++.|
T Consensus 336 -~~~~l~~d~~iVvyC~~G~--------------rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 336 -ALAKLPQDRTIVLYCKTGV--------------RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred -HHhhCCCCCcEEEEcCCCh--------------HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 1234688999999999997 999999999999999999999999999988654
No 48
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.69 E-value=5.6e-17 Score=147.20 Aligned_cols=111 Identities=26% Similarity=0.307 Sum_probs=80.9
Q ss_pred CeEEEEcCChhhhhhCCCCCCeeechhhHHhhh--------hhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCC
Q 026264 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW--------TAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA 179 (241)
Q Consensus 108 ~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 179 (241)
+.+|||||++.||.+||||||+|+|+....+.. .+...+++.|+.+.+. +.++++++ .....+++.
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~-----~l~~~i~~-~~~~~~~~~ 75 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSP-----NLAAHVEQ-WRAFADGPP 75 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhH-----HHHHHHHH-HHhhcCCCC
Confidence 468999999999999999999999996543221 1112233334333331 34456655 444556666
Q ss_pred eEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCccc
Q 026264 180 KIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 239 (241)
Q Consensus 180 ~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~ 239 (241)
+||+||. +|. ||..++++|+.+|| +|++|+||+.+|...+.+...
T Consensus 76 ~vvvyC~~gG~--------------RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~ 121 (311)
T TIGR03167 76 QPLLYCWRGGM--------------RSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLE 121 (311)
T ss_pred cEEEEECCCCh--------------HHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhh
Confidence 7999996 454 99999999999999 699999999999998876543
No 49
>PRK07411 hypothetical protein; Validated
Probab=99.67 E-value=2.5e-16 Score=147.12 Aligned_cols=106 Identities=25% Similarity=0.417 Sum_probs=86.9
Q ss_pred hccccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHH
Q 026264 90 KRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167 (241)
Q Consensus 90 ~~~~~Is~~el~~~l~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (241)
..+..|+++++.++++.+ +++|||||++.||..||||||+|+|+.++.... ..
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~-------------------------~~ 333 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP-------------------------GV 333 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc-------------------------ch
Confidence 345689999999988754 579999999999999999999999998764310 00
Q ss_pred hhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264 168 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 237 (241)
Q Consensus 168 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~ 237 (241)
+ ....++++++||+||.+|. ||..++..|++.||++ +.|+||+.+|.++..|.
T Consensus 334 ~--~l~~l~~d~~IVvyC~~G~--------------RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 334 E--KVKELLNGHRLIAHCKMGG--------------RSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred H--HHhhcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 1 1123567899999999998 9999999999999985 58999999999887664
No 50
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.66 E-value=3.3e-16 Score=144.56 Aligned_cols=96 Identities=26% Similarity=0.451 Sum_probs=80.8
Q ss_pred cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 171 (241)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (241)
...++++++.+.. .+.+|||||++.||..||||||+|+|+..+...+ .
T Consensus 260 ~~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~------------------------------~ 307 (355)
T PRK05597 260 GEVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGA------------------------------N 307 (355)
T ss_pred ccccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcc------------------------------c
Confidence 4568888888543 2679999999999999999999999998765421 1
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
...++++++||+||+.|. +|..+++.|++.||+||++|+||+.+|.++
T Consensus 308 ~~~~~~~~~IvvyC~~G~--------------rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 308 PPSVSAGDEVVVYCAAGV--------------RSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred cccCCCCCeEEEEcCCCH--------------HHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 123678899999999987 999999999999999999999999999753
No 51
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.65 E-value=2.9e-16 Score=144.43 Aligned_cols=125 Identities=24% Similarity=0.281 Sum_probs=82.5
Q ss_pred cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHH----hhhhhccccCCCCCChHHHhhhh
Q 026264 96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQTGV 171 (241)
Q Consensus 96 s~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 171 (241)
+..++..++. ++.+|||||++.||.+||||||+|+|+....+...-..+.++ .+...++.+.. .+.++.+.+ .
T Consensus 4 ~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~-~~l~~~~~~-~ 80 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVA-GNIAAHREE-A 80 (345)
T ss_pred cHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcc-hhHHHHHHH-H
Confidence 3456666654 478999999999999999999999999755432111111111 11112222211 122333333 1
Q ss_pred hcCC-CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCc
Q 026264 172 ESQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 237 (241)
Q Consensus 172 ~~~i-~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~ 237 (241)
.... .++++||+||..|+ .||..++++|...|| +|++|+||+.+|...+++.
T Consensus 81 ~~~~~~~~~~ivvyC~rgG-------------~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~ 133 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGG-------------LRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDT 133 (345)
T ss_pred HHhcccCCCeEEEEECCCC-------------hHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHH
Confidence 1222 37889999996443 299999999999999 5999999999999877644
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.62 E-value=5.3e-15 Score=117.65 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=79.4
Q ss_pred cccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264 94 SVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 171 (241)
Q Consensus 94 ~Is~~el~~~l~~--~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (241)
.|+++++.+++++ ++.+|||||+..+|..||||||+|+|+..+.......... ........++..+.
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 69 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKI---------LLQQLLSCPEDRDR-- 69 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccch---------hhhhhcCCHHHHHH--
Confidence 3789999999975 4799999999999999999999999998754321000000 00000011122121
Q ss_pred hcCCCCCCeEEEEcCCCCCCC-CCCCCCCchhhHHHHHHHHHHH--cCCcceeEccccHHHHHhC
Q 026264 172 ESQLDKDAKIIVACATGGTMK-PSQNLPEGQQSRSLIAAYLLVL--NGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~-~~~~~~~~~~~rs~~aa~~L~~--~Gy~nV~~l~GG~~~W~~~ 233 (241)
.... ++++|||||..+..+. ..+ ..++..++..|.. .|+.+|++|+||+.+|.+.
T Consensus 70 l~~~-~~~~VVvYd~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 70 LRRG-ESLAVVVYDESSSDRERLRE------DSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred HhcC-CCCeEEEEeCCCcchhhccc------cchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 1122 6789999999886210 000 1246667777777 3678899999999999763
No 53
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.59 E-value=1.6e-15 Score=134.89 Aligned_cols=139 Identities=26% Similarity=0.399 Sum_probs=112.8
Q ss_pred CceEEeecCchhhhHhhhccCCCCCCccccCCCCCCCCCCCccchHHHHHHHhhhccccccHHHHHHHhcCCCeEEEEcC
Q 026264 36 TTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVR 115 (241)
Q Consensus 36 ~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR 115 (241)
++-.+....+|..++.|++...++.|+.- ...|....+ .+|+|+++.+++.+++.++||+|
T Consensus 75 ~K~s~~~~~pF~r~kVk~kkEIV~lg~~d---dv~p~~~vG----------------~yl~p~~wn~~l~D~~~vviDtR 135 (308)
T COG1054 75 FKISEADEKPFWRLKVKLKKEIVALGVED---DVDPLENVG----------------TYLSPKDWNELLSDPDVVVIDTR 135 (308)
T ss_pred eeeccccCCCcceEEEeehhhheecCCCC---CcCcccccc----------------CccCHHHHHHHhcCCCeEEEEcC
Confidence 34444566889999999999999999874 112222212 47999999999999999999999
Q ss_pred ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCC
Q 026264 116 PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQ 195 (241)
Q Consensus 116 ~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~ 195 (241)
...||+.||..||++.+...+.+ .|.++++ ... .-++++|+.||.+|.
T Consensus 136 N~YE~~iG~F~gAv~p~~~tFre------------------------fP~~v~~-~~~-~~~~KkVvmyCTGGI------ 183 (308)
T COG1054 136 NDYEVAIGHFEGAVEPDIETFRE------------------------FPAWVEE-NLD-LLKDKKVVMYCTGGI------ 183 (308)
T ss_pred cceeEeeeeecCccCCChhhhhh------------------------hHHHHHH-HHH-hccCCcEEEEcCCce------
Confidence 99999999999999999988764 4556655 222 234559999999999
Q ss_pred CCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 196 NLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 196 ~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
|+..+..+|+..||++|++|+||+-.+.+.
T Consensus 184 --------RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 184 --------RCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred --------eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 999999999999999999999999887664
No 54
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.56 E-value=9.5e-15 Score=135.63 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=78.1
Q ss_pred ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCC---CCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhh
Q 026264 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPP---GAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 169 (241)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIp---GAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (241)
..++++++.+++++++.+|||||++.||..|||| ||+|||+..+.+.. ++.+
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~------------------------~~~~- 325 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA------------------------DILH- 325 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch------------------------hhhh-
Confidence 3689999999998877899999999999999998 59999998875310 1111
Q ss_pred hhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcc-eeEccccHH
Q 026264 170 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLY 228 (241)
Q Consensus 170 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~n-V~~l~GG~~ 228 (241)
....++++ +|||||.+|. ||..++..|++.||++ |++|.||+.
T Consensus 326 -~l~~~~~~-~Ivv~C~sG~--------------RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 326 -ALSPIDGD-NVVVYCASGI--------------RSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred -hccccCCC-cEEEECCCCh--------------hHHHHHHHHHHcCCCCceEEeccccC
Confidence 11234554 8999999998 9999999999999986 999999985
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.33 E-value=5.6e-12 Score=111.75 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=95.8
Q ss_pred cccHHHHHHHhcCCCeEEEEcC---------ChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCCh
Q 026264 94 SVEAKEALRLQKENNFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 164 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR---------~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (241)
.|+++++.+.+.+.+..|||.- ...||...|||||+++.++........ ..+++. ...
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~----------~~~~lp---~~e 72 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSP----------YRHMLP---TAE 72 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCc----------ccccCc---cHH
Confidence 5888999999988889999984 456888999999999999887442211 111221 123
Q ss_pred HHHhhhhhcCCCCCCeEEEEcC--CCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhCCCCcccC
Q 026264 165 EFLQTGVESQLDKDAKIIVACA--TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 240 (241)
Q Consensus 165 ~~~~~~~~~~i~~~~~IVvyC~--~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~g~p~~~g 240 (241)
.|.+-....++++++.+|||++ .|. ..|.+++|.++.+|+++|.+|+||+..|++.|+|+.++
T Consensus 73 ~Fa~y~~~lGi~n~d~vViYd~~~~Gm-------------~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~ 137 (286)
T KOG1529|consen 73 HFAEYASRLGVDNGDHVVIYDRGDGGM-------------FSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSS 137 (286)
T ss_pred HHHHHHHhcCCCCCCeEEEEcCCCcce-------------eehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccc
Confidence 4444435589999999999999 666 48999999999999999999999999999999999875
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.33 E-value=3.8e-12 Score=122.02 Aligned_cols=73 Identities=23% Similarity=0.330 Sum_probs=64.1
Q ss_pred CCeEEEEcCChhhhhhCCCCC----CeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhcCCCCCCeEE
Q 026264 107 NNFVILDVRPEAEFKEAHPPG----AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII 182 (241)
Q Consensus 107 ~~~~lIDvR~~~Ey~~ghIpG----Ainip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~IV 182 (241)
++.+|||||++.||..||||| |+|+|+..+... ...++++++||
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~--------------------------------~~~l~~~~~ii 453 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ--------------------------------FGDLDQSKTYL 453 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH--------------------------------HhhcCCCCeEE
Confidence 368999999999999999999 999999887542 13367888999
Q ss_pred EEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccc
Q 026264 183 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 225 (241)
Q Consensus 183 vyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~G 225 (241)
+||.+|. ||..++..|.++||+||++|.+
T Consensus 454 vyC~~G~--------------rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 454 LYCDRGV--------------MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred EECCCCH--------------HHHHHHHHHHHcCCccEEecCC
Confidence 9999998 9999999999999999998753
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.2e-11 Score=111.75 Aligned_cols=103 Identities=24% Similarity=0.449 Sum_probs=80.1
Q ss_pred hccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264 90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (241)
Q Consensus 90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
..++.|+++.++.++++. .++|||+|-+.||..|||+||+||+..+.....
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~----------------------- 209 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF----------------------- 209 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh-----------------------
Confidence 457899999999998752 367999999999999999999999988765421
Q ss_pred hHHHhhhhhcCC---CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH------------cCCcceeEccccHH
Q 026264 164 PEFLQTGVESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL------------NGYKNVYHLEGGLY 228 (241)
Q Consensus 164 ~~~~~~~~~~~i---~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~------------~Gy~nV~~l~GG~~ 228 (241)
|.. .... .+...+||||.... .|...+|..|+. +-|..+++|+|||.
T Consensus 210 --f~~---~~~~~~~~~~~i~IFhCefSq-------------~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk 271 (325)
T KOG3772|consen 210 --FLL---KDGVPSGSKRVILIFHCEFSQ-------------ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYK 271 (325)
T ss_pred --hcc---ccccccccCceeEEEEeeecc-------------ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHH
Confidence 111 1111 23457899999876 499999999994 35668999999999
Q ss_pred HHHhC
Q 026264 229 KWFKE 233 (241)
Q Consensus 229 ~W~~~ 233 (241)
.|...
T Consensus 272 ~ff~~ 276 (325)
T KOG3772|consen 272 EFFSN 276 (325)
T ss_pred HHHHh
Confidence 99754
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.08 E-value=2.1e-10 Score=104.21 Aligned_cols=105 Identities=24% Similarity=0.352 Sum_probs=83.6
Q ss_pred ccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhh
Q 026264 93 RSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 171 (241)
Q Consensus 93 ~~Is~~el~~~l~~-~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (241)
..|+..|+++++++ ..+++||||++-||+..|+|+|+|||+.++..... .+. .
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~----------------------~~~----~ 370 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG----------------------KKL----Q 370 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh----------------------hhh----c
Confidence 57899999999987 47899999999999999999999999998876321 000 1
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc-ceeEccccHHHHHhCCCCc
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKWFKEELPE 237 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~-nV~~l~GG~~~W~~~g~p~ 237 (241)
...-....+|+|.|+.|+ .|.+|.+.|++...+ +|+-+.||+.+|...-.|.
T Consensus 371 ~~~~~~~~~I~ViCrrGN--------------dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~ 423 (427)
T KOG2017|consen 371 GDLNTESKDIFVICRRGN--------------DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPN 423 (427)
T ss_pred ccccccCCCEEEEeCCCC--------------chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcC
Confidence 112234567999999999 799999999986654 7888999999999875443
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.99 E-value=1.8e-09 Score=95.99 Aligned_cols=96 Identities=26% Similarity=0.394 Sum_probs=76.9
Q ss_pred hcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCC-ChHHHhhhh
Q 026264 104 QKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE-NPEFLQTGV 171 (241)
Q Consensus 104 l~~~~~~lIDvR~~~Ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 171 (241)
+..+++..||.|...+|. .||||||+|+|+..+.... +... ..+....+.
T Consensus 168 ~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~------------------g~~k~~edl~~~f~ 229 (286)
T KOG1529|consen 168 LATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD------------------GFIKPAEDLKHLFA 229 (286)
T ss_pred cccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc------------------cccCCHHHHHHHHH
Confidence 345579999999999986 6899999999999886521 1111 233444445
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHh
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 232 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~ 232 (241)
..++..+++||+-|+.|. .+...+..|...| .++.+|+|+|.+|.-
T Consensus 230 ~~~l~~~~p~~~sC~~Gi--------------sa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 230 QKGLKLSKPVIVSCGTGI--------------SASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred hcCcccCCCEEEeeccch--------------hHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 577888999999999998 8889999999999 789999999999985
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.41 E-value=6e-07 Score=81.08 Aligned_cols=101 Identities=23% Similarity=0.354 Sum_probs=77.0
Q ss_pred hccccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCC
Q 026264 90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (241)
Q Consensus 90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (241)
..++.|+++.++.+++.. +.+|||+|=+.||..|||-.||||.-..-...
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~------------------------ 294 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGL------------------------ 294 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHHH------------------------
Confidence 346789999999998753 35699999999999999999999986543220
Q ss_pred hHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHc------------CCcceeEccccHHHHH
Q 026264 164 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF 231 (241)
Q Consensus 164 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------Gy~nV~~l~GG~~~W~ 231 (241)
.| +-.-+..-..+|+.|.... .|+...|..|+.. =|..|++|+||+..+-
T Consensus 295 -~F----~hkplThp~aLifHCEfSs-------------hRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy 356 (427)
T COG5105 295 -LF----RHKPLTHPRALIFHCEFSS-------------HRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFY 356 (427)
T ss_pred -HH----HhccccCceeEEEEeeccc-------------ccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHh
Confidence 11 1122444567999999875 3999999999863 3568999999998865
Q ss_pred h
Q 026264 232 K 232 (241)
Q Consensus 232 ~ 232 (241)
.
T Consensus 357 ~ 357 (427)
T COG5105 357 S 357 (427)
T ss_pred h
Confidence 4
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.65 E-value=4.3e-05 Score=68.53 Aligned_cols=113 Identities=22% Similarity=0.192 Sum_probs=69.5
Q ss_pred HhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHH----hhhhhccccCCCCCChHHHhhhhhcCCCCC
Q 026264 103 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQTGVESQLDKD 178 (241)
Q Consensus 103 ~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 178 (241)
.+...+..|||||.+.||..|+.|+++|+|...-.....-....++ ++....+.+.........++. ..... .+
T Consensus 10 ~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~a-sk~f~-e~ 87 (334)
T COG2603 10 ALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEA-SKAFQ-EE 87 (334)
T ss_pred HHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHH-HHHHH-Hh
Confidence 3334488999999999999999999999998765443322222222 222222221111112222222 11111 22
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH-HHcCCcceeEccccHHHHH
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-VLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L-~~~Gy~nV~~l~GG~~~W~ 231 (241)
.++-++|..|+ .|+...+.+| ...|++ +.-+.||+.+..
T Consensus 88 ~~~Gi~c~rgg-------------~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 88 NPVGILCARGG-------------LRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred CCcceeecccc-------------chhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 35555599988 4999999999 778875 667789987654
No 62
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.80 E-value=0.017 Score=51.63 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=70.6
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHHHhhhhhc
Q 026264 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES 173 (241)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (241)
.++.+|+.+.+..++.+++|+|+ +..||.+|+|+-+..++.+... +--+.+..++.+....+.|-.
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~-----~g~l~~ra~~p~~~d~~~~~~----- 70 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLT-----GGNLPVRALFPRSCDDKRFPA----- 70 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHh-----CCCCcceeccCCccccccccc-----
Confidence 47888999999888999999999 5679999999988877653200 000111111211111111110
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
-=+...+|.|+.+...|.+-.. -..--...-+.++..|+. +++|.|||..+..+
T Consensus 71 -~c~~v~vilyD~~~~e~e~~~~----~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 71 -RCGTVTVILYDESSAEWEEETG----AESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred -cCCcceeeecccccccccccch----hhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 0123678999988543322111 011111233566677885 99999999987654
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.50 E-value=0.042 Score=42.72 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=17.0
Q ss_pred ccccHHHHHHHhcCCCeEEEEcCChhh
Q 026264 93 RSVEAKEALRLQKENNFVILDVRPEAE 119 (241)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR~~~E 119 (241)
..++++++.++.+.+=..||+.|+..|
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E 39 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGE 39 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence 368899999888875678999998755
No 64
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=94.82 E-value=0.24 Score=47.37 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=35.7
Q ss_pred ccccHHHHHHHh--cCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhh
Q 026264 93 RSVEAKEALRLQ--KEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW 140 (241)
Q Consensus 93 ~~Is~~el~~~l--~~~--~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~ 140 (241)
-.|+.-|+.+.- ..+ .+.|||+|+..+|+.||+..|.|+.-.-..++.
T Consensus 307 Lpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP 358 (669)
T KOG3636|consen 307 LPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEP 358 (669)
T ss_pred cchhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCH
Confidence 346666665432 222 478999999999999999999999987665543
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.74 E-value=0.011 Score=57.71 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=69.5
Q ss_pred HhhhccccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCCCCChHH
Q 026264 87 LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 166 (241)
Q Consensus 87 l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (241)
+....++.|+++++..+ ....++|.|...||..+|+++++|+|...-+.+. .|. .+
T Consensus 616 l~se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l-~~~--------------------~~ 671 (725)
T KOG1093|consen 616 LSSEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADL-DWL--------------------RF 671 (725)
T ss_pred hhhhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHH-HHh--------------------hc
Confidence 33466788999988776 4688999999999999999999999998222111 000 01
Q ss_pred HhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHHH
Q 026264 167 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 231 (241)
Q Consensus 167 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~ 231 (241)
.+. ..-..+.++|++..... -+.+....+..+-+..+.++.+|++...
T Consensus 672 l~~---~~~~~~~~~v~~~~~~K--------------~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 672 LPG---IVCSEGKKCVVVGKNDK--------------HAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred chH---hHHhhCCeEEEeccchH--------------HHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 111 11134455666655443 6666666777767888889999998443
No 66
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.55 E-value=0.14 Score=40.93 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=21.1
Q ss_pred ccccHHHHHHHhcCCCeEEEEcCChhhh
Q 026264 93 RSVEAKEALRLQKENNFVILDVRPEAEF 120 (241)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey 120 (241)
..++++++..+.+.+=..|||.|+..|-
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence 4578888877665555789999997764
No 67
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.00 E-value=1.2 Score=36.39 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=21.5
Q ss_pred hccccccHHHHHHHhcCCCeEEEEcCChhhhhhC---CCCCCee
Q 026264 90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEA---HPPGAIN 130 (241)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~g---hIpGAin 130 (241)
..+..++.+++..+.+-+=-.|||.|++.|.... .++|..+
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~ 68 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQY 68 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EE
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCcee
Confidence 3445788888877775445689999999998753 4556643
No 68
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=90.96 E-value=0.066 Score=48.98 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=37.5
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHH
Q 026264 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 145 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~ 145 (241)
=+++++.+.+.. ...++|+|....|..+||||++|+|. .-...|.+|..
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~-~~~~~~~~~l~ 64 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTI-EQTEAYMAWLK 64 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecH-HHHHHHHHHHh
Confidence 345666666654 46788999999999999999999999 44555666654
No 69
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=88.03 E-value=1.3 Score=34.37 Aligned_cols=29 Identities=38% Similarity=0.642 Sum_probs=20.5
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHcCC
Q 026264 176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGY 217 (241)
Q Consensus 176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~Gy 217 (241)
..+.+|+|+|..|.. ||.. +++.+...|+
T Consensus 79 ~~~~~vlVHC~~G~~-------------Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVS-------------RSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCc-------------hhHHHHHHHHHHHcCC
Confidence 346799999999973 6654 3566666665
No 70
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=84.40 E-value=1.1 Score=35.36 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=32.8
Q ss_pred EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHc----CCcceeEccccHHHH
Q 026264 181 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----GYKNVYHLEGGLYKW 230 (241)
Q Consensus 181 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----Gy~nV~~l~GG~~~W 230 (241)
|+|.|.++.| ||.+|..+|+++ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~c-------------RS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNIC-------------RSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSS-------------HHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcc-------------hHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 6899999987 999999999988 667899999998877
No 71
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=84.01 E-value=1.9 Score=39.39 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=31.2
Q ss_pred cccccHHHHHHHhcCCCeEEEEcCChhhhhh---CCCC
Q 026264 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKE---AHPP 126 (241)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~---ghIp 126 (241)
...+...++++.+...+..|||+|+..+|.. ||||
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 4568888999999887889999999999998 9999
No 72
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=83.20 E-value=3.6 Score=32.10 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHcCCc
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGYK 218 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~Gy~ 218 (241)
....+.+|+|+|..|.. ||.. +++.+...|++
T Consensus 74 ~~~~~~~VlVHC~~G~~-------------RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 74 AEKKGGKVLVHCQAGVS-------------RSATLIIAYLMKYRNLS 107 (138)
T ss_pred HhcCCCeEEEECCCCCc-------------hHHHHHHHHHHHHhCCC
Confidence 35677899999999973 6654 56677777874
No 73
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.30 E-value=6.5 Score=31.27 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=50.0
Q ss_pred ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccCCC-CCChHHHhhhh
Q 026264 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT-EENPEFLQTGV 171 (241)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 171 (241)
..|+++++.++-..+=..||--||..|-. .=|+ ..-.. ..+..+++.|.++.... ..-++-++.+.
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~--~QP~------~~~i~-----~aa~~aGl~y~~iPV~~~~iT~~dV~~f~ 80 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEEP--GQPG------FAAIA-----AAAEAAGLTYTHIPVTGGGITEADVEAFQ 80 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCCC--CCCC------hHHHH-----HHHHhcCCceEEeecCCCCCCHHHHHHHH
Confidence 35888888887776556789999855431 1111 11111 11223333433332221 11222233322
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 213 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~ 213 (241)
...-..+.+|+.||++|. ||...+..-.
T Consensus 81 ~Al~eaegPVlayCrsGt--------------Rs~~ly~~~~ 108 (130)
T COG3453 81 RALDEAEGPVLAYCRSGT--------------RSLNLYGLGE 108 (130)
T ss_pred HHHHHhCCCEEeeecCCc--------------hHHHHHHHHH
Confidence 233345679999999998 9887665443
No 74
>PRK10126 tyrosine phosphatase; Provisional
Probab=74.22 E-value=4.2 Score=32.69 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHH
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 230 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W 230 (241)
.+|+|.|.+..| ||.+|..+|+..+- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~c-------------RSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNIC-------------RSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHh-------------HHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 579999999987 99999999998763 476777777655
No 75
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=73.35 E-value=5.1 Score=32.25 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHH
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 230 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W 230 (241)
++|+|.|.+..| ||.+|..+|+... .++.+...|..+|
T Consensus 3 ~~ILfVC~gN~c-------------RSpmAEa~~~~~~-~~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNIC-------------RSPIGERLLRKRL-PGVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHh-------------HHHHHHHHHHHhc-CCeEEEcccccCC
Confidence 479999999987 9999999999865 2477777887665
No 76
>PLN02727 NAD kinase
Probab=72.06 E-value=15 Score=38.46 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=46.1
Q ss_pred cccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhhHHHHHHhhhhhccccC--CCCCChHHHhh
Q 026264 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS--GTEENPEFLQT 169 (241)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDvR~~~Ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 169 (241)
...++++++..+.+.+=-.||+.|+..|- .+.. ..... ....+.++.+.++.. .....++.+++
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~-------~~ee~------eAae~~GL~yVhIPVs~~~apt~EqVe~ 331 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFY-------QAAVD------DAISSGKIEVVKIPVEVRTAPSAEQVEK 331 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCch-------hHHHH------HHHHHcCCeEEEeecCCCCCCCHHHHHH
Confidence 45799999988877655689999997761 1111 00000 112223344444322 12223344444
Q ss_pred hhhcCC--CCCCeEEEEcCCCCC
Q 026264 170 GVESQL--DKDAKIIVACATGGT 190 (241)
Q Consensus 170 ~~~~~i--~~~~~IVvyC~~G~~ 190 (241)
+. ..+ ...++|++||.+|.+
T Consensus 332 fa-~~l~~slpkPVLvHCKSGar 353 (986)
T PLN02727 332 FA-SLVSDSSKKPIYLHSKEGVW 353 (986)
T ss_pred HH-HHHHhhcCCCEEEECCCCCc
Confidence 22 223 246799999999973
No 77
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=71.20 E-value=6.1 Score=30.84 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
++|+|.|....| ||.+|..+|+.++-.++.+...|..
T Consensus 1 ~~vlfvC~~N~c-------------RS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 1 KKVMFVCKRNSC-------------RSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred CeEEEEcCCcHH-------------HHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 368999999886 9999999999876556777777754
No 78
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=67.75 E-value=5.3 Score=31.46 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHHH
Q 026264 181 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 230 (241)
Q Consensus 181 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~W 230 (241)
|+|.|....| ||.+|..+|+...-.++.+...|+.+|
T Consensus 1 vLFVC~~N~c-------------RSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNIC-------------RSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhh-------------hHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 5788998886 999999999886544688888887755
No 79
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=67.73 E-value=4.8 Score=32.81 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHH
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 229 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~ 229 (241)
+++++.++++++-.|.. + .| ..-..++.+|+++|..+..+|+||-..
T Consensus 96 G~~~~g~l~l~~vdg~~---~----~g--~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 96 GVTADGKLLLIVVDGRQ---S----AG--MTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp EE-TTSEEEEEEE-------S--------B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EEeCCCcEEEEEEcCCc---C----CC--CCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 34566677777655410 0 11 167778889999999999999999654
No 80
>PRK13530 arsenate reductase; Provisional
Probab=65.41 E-value=10 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
++|+|.|.+..| ||.+|..+|+.++-+++.+...|..
T Consensus 4 ~~vLFvC~~N~c-------------RS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSC-------------RSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchh-------------HHHHHHHHHHHhcCCCEEEECCCCC
Confidence 579999999987 9999999998764356777777763
No 81
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=61.05 E-value=11 Score=30.41 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHHH
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 229 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~~ 229 (241)
.+|+|.|.+..| ||.+|-.+++...=+++.+...|..+
T Consensus 3 ~kVLFVC~gN~c-------------RSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNIC-------------RSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcc-------------cCHHHHHHHHHhccCCeEEECCccCC
Confidence 589999999998 99999999988654788888888644
No 82
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=60.27 E-value=11 Score=29.78 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=31.0
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc-ceeEccccHHHH
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKW 230 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~-nV~~l~GG~~~W 230 (241)
+|+|.|.+..| ||.+|..+|++..-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~-------------RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNIC-------------RSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhh-------------hhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 68999999986 999999999986543 688888887654
No 83
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=54.83 E-value=27 Score=28.75 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.6
Q ss_pred CCCCCCeEEEEcCCCC
Q 026264 174 QLDKDAKIIVACATGG 189 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~ 189 (241)
...++.+|+|+|..|.
T Consensus 94 ~~~~g~~V~VHC~aGi 109 (166)
T PTZ00242 94 QSTPPETIAVHCVAGL 109 (166)
T ss_pred hccCCCeEEEECCCCC
Confidence 3466889999999998
No 84
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=54.31 E-value=33 Score=29.51 Aligned_cols=33 Identities=33% Similarity=0.587 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeE
Q 026264 178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 222 (241)
Q Consensus 178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~ 222 (241)
..+|+|+|..|+ +|= ....+|+.|...||+ |.+
T Consensus 49 ~~~v~vlcG~Gn---------NGG--DG~VaAR~L~~~G~~-V~v 81 (203)
T COG0062 49 ARRVLVLCGPGN---------NGG--DGLVAARHLKAAGYA-VTV 81 (203)
T ss_pred CCEEEEEECCCC---------ccH--HHHHHHHHHHhCCCc-eEE
Confidence 678999999986 333 678899999999986 443
No 85
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=51.57 E-value=18 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.026 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 181 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 181 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
|+|.|....| ||.+|..+|+.+.=+++.+...|+.
T Consensus 1 iLFvC~~N~~-------------RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSC-------------RSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchH-------------HHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 5788988886 9999988888764356777788874
No 86
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.54 E-value=27 Score=27.77 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=38.1
Q ss_pred cCCCCCCeEEEE------cCCCCCCCCCCCCCCchhhHHHHH-HHHHHHcCCc--ceeEccccHHHHHhCCCCc
Q 026264 173 SQLDKDAKIIVA------CATGGTMKPSQNLPEGQQSRSLIA-AYLLVLNGYK--NVYHLEGGLYKWFKEELPE 237 (241)
Q Consensus 173 ~~i~~~~~IVvy------C~~G~~~~~~~~~~~~~~~rs~~a-a~~L~~~Gy~--nV~~l~GG~~~W~~~g~p~ 237 (241)
+.+.++++|++| ..+|.-|||.|. +|.-+ ...|+.++-+ =|+++.|....|+.-..|.
T Consensus 20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV-------~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~F 86 (128)
T KOG3425|consen 20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCV-------AAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPF 86 (128)
T ss_pred HHHhCCceEEEEEecccCCCCCCcCCchHH-------HhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcc
Confidence 446666666665 456677999988 45444 4455555432 3668889999999865543
No 87
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=49.98 E-value=28 Score=30.66 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEc
Q 026264 178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 223 (241)
Q Consensus 178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l 223 (241)
..+|+|+|..|+ +|- .+..+|+.|...||+ |.++
T Consensus 60 ~~~V~VlcG~GN---------NGG--DGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGN---------NGG--DGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCC---------Cch--hHHHHHHHHHHCCCe-EEEE
Confidence 368999999875 232 677899999999995 5544
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.09 E-value=59 Score=25.04 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=9.7
Q ss_pred HHHHHHHcCCcceeEcccc
Q 026264 208 AAYLLVLNGYKNVYHLEGG 226 (241)
Q Consensus 208 aa~~L~~~Gy~nV~~l~GG 226 (241)
....|++.|++++.++.||
T Consensus 70 ~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 70 VIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHhcCCCCCEEEEEC
Confidence 3444555555555555554
No 89
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=47.86 E-value=26 Score=29.12 Aligned_cols=32 Identities=41% Similarity=0.648 Sum_probs=22.2
Q ss_pred cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHcCC
Q 026264 173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGY 217 (241)
Q Consensus 173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~Gy 217 (241)
....++++|+|.|..|. .|+.. +||.|...|.
T Consensus 100 ~~~~~g~kVvVHC~~Gi-------------gRSgtviaA~lm~~~~~ 133 (180)
T COG2453 100 EALSKGKKVVVHCQGGI-------------GRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HHHhcCCeEEEEcCCCC-------------chHHHHHHHHHHHHcCC
Confidence 34567779999999998 36655 4456666454
No 90
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=47.54 E-value=21 Score=29.33 Aligned_cols=35 Identities=31% Similarity=0.604 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeE
Q 026264 176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 222 (241)
Q Consensus 176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~ 222 (241)
.+..+|+++|..|+ +|- .+..+++.|...||+ |.+
T Consensus 23 ~~~~~v~il~G~Gn---------NGg--Dgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGN---------NGG--DGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSH---------HHH--HHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCC---------ChH--HHHHHHHHHHHCCCe-EEE
Confidence 77789999999985 222 677899999999996 554
No 91
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=46.56 E-value=16 Score=30.51 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=20.0
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH-HHHHHHHcC
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI-AAYLLVLNG 216 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~-aa~~L~~~G 216 (241)
...+..+++|+++|.+|.. |+.. ||-.|.++|
T Consensus 127 ~~~L~~g~~V~vHC~GGlG-------------RtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 127 AARLENGRKVLVHCRGGLG-------------RTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHTT--EEEE-SSSSS-------------HHHHHHHHHHHHH-
T ss_pred HHHHHcCCEEEEECCCCCC-------------HHHHHHHHHHHHHc
Confidence 3445678899999999973 7766 566666666
No 92
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=45.62 E-value=31 Score=26.33 Aligned_cols=31 Identities=39% Similarity=0.643 Sum_probs=22.8
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHcCCc
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGYK 218 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~Gy~ 218 (241)
...+.+|+|+|..|.. ||.. +++.+...|++
T Consensus 70 ~~~~~~VlVHC~~G~~-------------RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLS-------------RSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHTTSEEEEEESSSSS-------------HHHHHHHHHHHHHHTSS
T ss_pred hcccceeEEEeCCCcc-------------cchHHHHHHHHHHcCCC
Confidence 5677899999999983 6654 45666666764
No 93
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=45.12 E-value=51 Score=28.05 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEc
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 223 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l 223 (241)
.++.++|+|+|..|+ +|- .+..+|+.|...|++ |+++
T Consensus 42 ~~~~~~v~vl~G~GN---------NGG--DGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 42 FPLAGHVIIFCGPGN---------NGG--DGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred cCCCCeEEEEECCCC---------Ccc--HHHHHHHHHHhCCCE-EEEE
Confidence 445678999999886 233 677789999887874 7765
No 94
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.88 E-value=42 Score=26.61 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=38.7
Q ss_pred ChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEcccc------HHHHHhCCC
Q 026264 163 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG------LYKWFKEEL 235 (241)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG------~~~W~~~g~ 235 (241)
.++|++. ....+..+|++|..-.. .-.........|++.|.+++.++.|| +..|.+.|.
T Consensus 42 ~e~~v~a----a~e~~adii~iSsl~~~----------~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 42 PEEIARQ----AVEADVHVVGVSSLAGG----------HLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred HHHHHHH----HHHcCCCEEEEcCchhh----------hHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 3456555 23456688999986531 11245667788889998788888898 345666664
No 95
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=44.78 E-value=27 Score=31.17 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=42.3
Q ss_pred ccccCCCCCChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEc
Q 026264 154 FGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 223 (241)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l 223 (241)
..++...++.-+.++. ....+.++..+++||.+-. +.......|++.||.++..+
T Consensus 165 Dav~LDmp~PW~~le~-~~~~Lkpgg~~~~y~P~ve--------------Qv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 165 DAVFLDLPDPWNVLEH-VSDALKPGGVVVVYSPTVE--------------QVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred CEEEEcCCChHHHHHH-HHHHhCCCcEEEEEcCCHH--------------HHHHHHHHHHhcCccchhhh
Confidence 3345555556677777 6677888899999999876 88899999999999776543
No 96
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=43.22 E-value=47 Score=29.21 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=28.7
Q ss_pred hHHHhhhhhcCCC---CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHH-----HHHHcCCcceeE
Q 026264 164 PEFLQTGVESQLD---KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY-----LLVLNGYKNVYH 222 (241)
Q Consensus 164 ~~~~~~~~~~~i~---~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~-----~L~~~Gy~nV~~ 222 (241)
..+++. ....++ ++..+|++|.+.. ....+++ .|.+.||++|++
T Consensus 121 e~~v~a-ik~~~ppl~k~e~~vlmgHGt~--------------h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 121 EICVEA-IKDQIPPLNKDEILVLMGHGTD--------------HHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHH-HHHhcCCcCcCeEEEEEecCCC--------------ccHHHHHHHHHHHHHhcCCCceEE
Confidence 356666 555566 7788999998765 3333333 456689988874
No 97
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.69 E-value=39 Score=27.54 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=33.9
Q ss_pred cCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccH
Q 026264 173 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227 (241)
Q Consensus 173 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~ 227 (241)
..+..+..+|..|.... +-..-...+...|++.|.+++.++.||.
T Consensus 58 aA~~~dv~vIgvSsl~g----------~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 58 AAVEEDVDVIGVSSLDG----------GHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HHHhcCCCEEEEEeccc----------hHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 34777788888887654 1123567788899999999999888885
No 98
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=41.01 E-value=41 Score=32.50 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEc
Q 026264 178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 223 (241)
Q Consensus 178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l 223 (241)
.++|+|+|..|+ +|- .+..+|+.|...||+ |.++
T Consensus 59 ~~~VlVlcG~GN---------NGG--DGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGN---------NGG--DGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCC---------CHH--HHHHHHHHHHHCCCc-eEEE
Confidence 368999999986 333 677799999999996 5443
No 99
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=40.40 E-value=18 Score=33.38 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=31.5
Q ss_pred ccccccHHHHHHHhc------CCCeEEEEcCChhhhhhCCCCC-Ceeec
Q 026264 91 RVRSVEAKEALRLQK------ENNFVILDVRPEAEFKEAHPPG-AINVQ 132 (241)
Q Consensus 91 ~~~~Is~~el~~~l~------~~~~~lIDvR~~~Ey~~ghIpG-Ainip 132 (241)
....++++++.+.++ ..+.++||||++. |...++|+ ...|-
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~gr~~i~ 322 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDGRVLVH 322 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCCCEEEE
Confidence 446799999988873 2378999999988 99999984 44444
No 100
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=40.25 E-value=42 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=22.5
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHH-HHHHHHHcCCc
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI-AAYLLVLNGYK 218 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~-aa~~L~~~Gy~ 218 (241)
+..+.+|+|+|..|.. |+.. ++.+|.+.|++
T Consensus 167 l~~g~~VaVHC~AGlG-------------RTGtl~AayLI~~Gms 198 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLG-------------RAPVLASIVLIEFGMD 198 (241)
T ss_pred HhcCCeEEEECCCCCC-------------HHHHHHHHHHHHcCCC
Confidence 4577899999999973 6654 45566667874
No 101
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=40.02 E-value=36 Score=27.92 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=33.9
Q ss_pred hhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH---cCCcceeEccccHHHH
Q 026264 171 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKW 230 (241)
Q Consensus 171 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~---~Gy~nV~~l~GG~~~W 230 (241)
....++++..+|+.|..|.. ..|...|..|.. .|..++..+-||-.+.
T Consensus 60 il~~i~~~~~~i~Ld~~Gk~------------~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 60 ILKKIPPNDYVILLDERGKQ------------LSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHCTSHTTSEEEEE-TTSEE--------------HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHhhccCCCEEEEEcCCCcc------------CChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 44667889999999998863 478888888877 6888899999986554
No 102
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=39.84 E-value=64 Score=23.81 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccH
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~ 227 (241)
..+.+.+++|||..-. .+..++..|.+.+. ++..+.|++
T Consensus 24 ~~~~~~~~lvf~~~~~--------------~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 24 HLKKGGKVLIFCPSKK--------------MLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred cccCCCcEEEEeCcHH--------------HHHHHHHHHHhcCC-cEEEEECCC
Confidence 3446778999999876 78888888888776 588888875
No 103
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=39.54 E-value=45 Score=33.05 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEc
Q 026264 178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 223 (241)
Q Consensus 178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l 223 (241)
.++|+|+|..|+ +|- ....+|+.|...||+ |.++
T Consensus 135 ~~~VlVlcGpGN---------NGG--DGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGN---------NGG--DGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCc---------CHH--HHHHHHHHHHHCCCc-eEEE
Confidence 368999999986 333 667789999999996 5543
No 104
>PRK12361 hypothetical protein; Provisional
Probab=37.90 E-value=29 Score=33.99 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=12.7
Q ss_pred CCCCCeEEEEcCCCC
Q 026264 175 LDKDAKIIVACATGG 189 (241)
Q Consensus 175 i~~~~~IVvyC~~G~ 189 (241)
...+.+|+|+|..|.
T Consensus 172 ~~~~~~VlVHC~~G~ 186 (547)
T PRK12361 172 VRANKSVVVHCALGR 186 (547)
T ss_pred HHCCCeEEEECCCCC
Confidence 455789999999998
No 105
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=37.54 E-value=69 Score=28.58 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=26.1
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEcc
Q 026264 174 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 224 (241)
Q Consensus 174 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~ 224 (241)
+++.++++++...+| .+..+++.|.+.|..+|+++.
T Consensus 118 ~~~~~~~vlilGaGG---------------aarAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 118 QVPPDLVVALRGSGG---------------MAKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred CCCCCCeEEEECCcH---------------HHHHHHHHHHHCCCCEEEEEe
Confidence 444455677776544 677788999999998888764
No 106
>PRK10565 putative carbohydrate kinase; Provisional
Probab=36.87 E-value=67 Score=31.37 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=27.3
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEc
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 223 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l 223 (241)
+++..+|+|+|..|+ +|- .+..+|+.|...||+ |.++
T Consensus 57 ~~~~~~v~vl~G~GN---------NGG--DG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGN---------NGG--DGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCC---------chH--HHHHHHHHHHHCCCc-eEEE
Confidence 344567999999886 333 567799999999996 5433
No 107
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=36.50 E-value=55 Score=25.64 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccH
Q 026264 177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227 (241)
Q Consensus 177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~ 227 (241)
++++++++..+| .+..+++.|...|+++|+++.--.
T Consensus 11 ~~~~vlviGaGg---------------~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGG---------------AARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSH---------------HHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHH---------------HHHHHHHHHHHcCCCEEEEEECCH
Confidence 456777776644 688899999999999898876543
No 108
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.39 E-value=51 Score=23.46 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH----HcCCc
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LNGYK 218 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~----~~Gy~ 218 (241)
+|++.|.+|. ..|..++..++ +.|++
T Consensus 1 kIlvvC~~Gi-------------~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGI-------------GTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSS-------------HHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChH-------------HHHHHHHHHHHHHHHhccCc
Confidence 5899999998 36666655554 46875
No 109
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=32.33 E-value=92 Score=31.20 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
..+..-|+||.+-. .+...+.+|...|++ +..|.||+.
T Consensus 228 ~~~~~GIIYc~sRk--------------~~E~ia~~L~~~g~~-a~~YHaGl~ 265 (590)
T COG0514 228 QLSKSGIIYCLTRK--------------KVEELAEWLRKNGIS-AGAYHAGLS 265 (590)
T ss_pred ccCCCeEEEEeeHH--------------hHHHHHHHHHHCCCc-eEEecCCCC
Confidence 34556799999976 788999999999985 888889976
No 110
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=31.65 E-value=48 Score=29.67 Aligned_cols=31 Identities=39% Similarity=0.692 Sum_probs=24.7
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHH--HHHHHHHHcCCc
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSL--IAAYLLVLNGYK 218 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~--~aa~~L~~~Gy~ 218 (241)
..++.+|+|+|..|. .||. .+|++++..|.+
T Consensus 152 ~~~~~~vlVHC~~Gv-------------SRSat~viAYlM~~~~~~ 184 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGV-------------SRSATLVIAYLMKYEGLS 184 (285)
T ss_pred HhCCCeEEEEcCCcc-------------chhHHHHHHHHHHHcCCC
Confidence 455889999999998 4766 678899888763
No 111
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=31.44 E-value=60 Score=29.34 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc-ceeEccccHH
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLY 228 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~-nV~~l~GG~~ 228 (241)
..++.+++|||++-. .+..++..|++.|.+ ++..+.|++.
T Consensus 219 ~~~~~~~lVf~~t~~--------------~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 219 IKKGGKIAIIVNTVD--------------RAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred hhCCCeEEEEECCHH--------------HHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 456688999999875 788889999998874 6889999863
No 112
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=29.84 E-value=77 Score=22.80 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=9.5
Q ss_pred CeEEEEcCCCC
Q 026264 179 AKIIVACATGG 189 (241)
Q Consensus 179 ~~IVvyC~~G~ 189 (241)
.+|+++|.+|.
T Consensus 1 ~kilvvCg~G~ 11 (87)
T cd05567 1 KKIVFACDAGM 11 (87)
T ss_pred CEEEEECCCCc
Confidence 36999999997
No 113
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=29.59 E-value=61 Score=32.23 Aligned_cols=35 Identities=34% Similarity=0.401 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccH
Q 026264 178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227 (241)
Q Consensus 178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~ 227 (241)
+.+||||.+.-. .+-..|..|.++|| +++.|.||-
T Consensus 517 ~ppiIIFvN~kk--------------~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 517 DPPIIIFVNTKK--------------GADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCEEEEEechh--------------hHHHHHHHHhhccc-eEEEeeCCc
Confidence 457888888865 67889999999999 599999984
No 114
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=29.57 E-value=1.4e+02 Score=27.71 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.0
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhh---CCCCC
Q 026264 95 VEAKEALRLQKENNFVILDVRPEAEFKE---AHPPG 127 (241)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~Ey~~---ghIpG 127 (241)
..-.+++..+.+.+..+||+|...+|.. |.+++
T Consensus 152 sGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 152 SGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred ccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 4455677777777888999999999983 55555
No 115
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.16 E-value=84 Score=23.36 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH----HHcCCcceeEccccHHHH
Q 026264 178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL----VLNGYKNVYHLEGGLYKW 230 (241)
Q Consensus 178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L----~~~Gy~nV~~l~GG~~~W 230 (241)
..+|++.|.+|. .+..++..+ .+.|++ +.+...++..-
T Consensus 3 ~~~ILl~C~~G~--------------sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGM--------------STSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCch--------------hHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 368999999997 344444444 446774 55555555443
No 116
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=26.70 E-value=1.1e+02 Score=28.62 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=16.5
Q ss_pred cCCCe-EEEEcCChhhhh-hCCCCCCeeech
Q 026264 105 KENNF-VILDVRPEAEFK-EAHPPGAINVQI 133 (241)
Q Consensus 105 ~~~~~-~lIDvR~~~Ey~-~ghIpGAinip~ 133 (241)
.+++. +-|++|...-|- ...++|.=-+|+
T Consensus 139 ~nPd~~i~vei~~~~ayi~~~~~~g~gGlP~ 169 (371)
T TIGR00342 139 TNPDITVHIEIREDEFLIITERYEGIGGLPV 169 (371)
T ss_pred cCCCEEEEEEEECCEEEEEEEeEecCCCcCc
Confidence 34453 458888765554 345666655554
No 117
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=26.58 E-value=79 Score=25.97 Aligned_cols=47 Identities=26% Similarity=0.177 Sum_probs=35.3
Q ss_pred hcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH---cCCcceeEccccHHHH
Q 026264 172 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKW 230 (241)
Q Consensus 172 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~---~Gy~nV~~l~GG~~~W 230 (241)
...++++..+|+.|..|.. ..|...|..|.. .|..++..+-||-.++
T Consensus 61 l~~l~~~~~~i~LDe~Gk~------------~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 61 LAALPKGARVIALDERGKQ------------LSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HhhCCCCCEEEEEcCCCCc------------CCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 3457778889999999874 377788888865 3656799999986554
No 118
>PTZ00110 helicase; Provisional
Probab=26.26 E-value=1.1e+02 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
.+.++||||++-. .+..++..|...|+. +..+.|++.
T Consensus 376 ~~~k~LIF~~t~~--------------~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKK--------------GADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChH--------------HHHHHHHHHHHcCCc-EEEEECCCc
Confidence 6678999999976 888899999999995 677778764
No 119
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=25.89 E-value=1.5e+02 Score=20.72 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc
Q 026264 175 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 218 (241)
Q Consensus 175 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~ 218 (241)
+....+|++|...+. ..+..+-..|...|++
T Consensus 4 ~~~~~~V~ly~~~~C-------------p~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 4 ARKPESVVVFTKPGC-------------PFCAKAKATLKEKGYD 34 (79)
T ss_pred cCCCCCEEEEECCCC-------------HhHHHHHHHHHHcCCC
Confidence 445567999988875 3788899999999885
No 120
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=25.70 E-value=1e+02 Score=30.12 Aligned_cols=35 Identities=40% Similarity=0.483 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEcccc
Q 026264 177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 226 (241)
Q Consensus 177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG 226 (241)
.+.+|||+.. |. ....||..|.+.|+.|+.+++|+
T Consensus 20 ~~~kIvIIGA-G~--------------AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIGA-GI--------------AGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEECC-ch--------------HHHHHHHHHHHhCCceEEEEEec
Confidence 4457777744 44 67778999999999999999875
No 121
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=24.96 E-value=1e+02 Score=29.07 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 218 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~ 218 (241)
.++++.-.+|. .|..|++.|.+.|++
T Consensus 181 gkvlvllSGGi--------------DSpVAa~ll~krG~~ 206 (381)
T PRK08384 181 GKVVALLSGGI--------------DSPVAAFLMMKRGVE 206 (381)
T ss_pred CcEEEEEeCCh--------------HHHHHHHHHHHcCCe
Confidence 45666666666 788888999888985
No 122
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.48 E-value=89 Score=29.19 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
...+++|||++-. .+...+..|...|++ +..+.|++.
T Consensus 254 ~~~~~lVF~~t~~--------------~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 254 WPDRAIIFANTKH--------------RCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred CCCeEEEEECCHH--------------HHHHHHHHHHhCCCc-EEEecCCCC
Confidence 3467899999876 788899999999994 888888864
No 123
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=24.44 E-value=1e+02 Score=28.82 Aligned_cols=37 Identities=27% Similarity=0.176 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
...+++|||++-. .+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~--------------~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRE--------------RVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChH--------------HHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4567899999976 888999999999985 888888864
No 124
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=23.50 E-value=53 Score=31.92 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=34.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH---------HHHhCCCCcc
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY---------KWFKEELPEV 238 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~---------~W~~~g~p~~ 238 (241)
.=||||++.. .+.++|-.|...|+. ..-|..|+. .|.+...|+.
T Consensus 257 CGIVYCRTR~--------------~cEq~AI~l~~~Gi~-A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 257 CGIVYCRTRN--------------ECEQVAIMLEIAGIP-AMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred ceEEEeccHH--------------HHHHHHHHhhhcCcc-hHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 4699999987 899999999999985 555566665 5888777763
No 125
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.40 E-value=91 Score=30.82 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
..+.+++|||++-. .+..++..|.+.|+. +..+.|++.
T Consensus 255 ~~~~k~LVF~nt~~--------------~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKA--------------FVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHH--------------HHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 34568999999976 888899999999994 888888854
No 126
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.25 E-value=83 Score=30.04 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
+++..||||.+-. .+..++..|...|+. +..|.||+.
T Consensus 225 ~~~~~IIF~~s~~--------------~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRK--------------KSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHH--------------HHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 5567799999876 888999999999995 778888865
No 127
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=22.65 E-value=88 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 176 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 176 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
.++...||||++-. .+..++..|...|+. +..|.||+.
T Consensus 234 ~~~~~~IIFc~tr~--------------~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 234 QRGKSGIIYCNSRA--------------KVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred cCCCCEEEEECcHH--------------HHHHHHHHHHhCCCC-EEEecCCCC
Confidence 35578899999976 788899999999985 888888874
No 128
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=22.64 E-value=1.2e+02 Score=28.44 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc
Q 026264 177 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 218 (241)
Q Consensus 177 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~ 218 (241)
.+.++++.+.+|. .|..+++++.+.|++
T Consensus 175 ~~gkvvvllSGGi--------------DS~vaa~l~~k~G~~ 202 (394)
T PRK01565 175 TSGKALLLLSGGI--------------DSPVAGYLAMKRGVE 202 (394)
T ss_pred CCCCEEEEECCCh--------------hHHHHHHHHHHCCCE
Confidence 3456677777776 677777777777774
No 129
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=22.59 E-value=90 Score=31.97 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=36.4
Q ss_pred CChHHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccH
Q 026264 162 ENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 227 (241)
Q Consensus 162 ~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~ 227 (241)
...++++. .+..+..||++|..-.. .......++..|++.|.++|.++.||.
T Consensus 621 s~e~~v~a----a~~~~a~ivvlcs~d~~----------~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 621 TPEEAARQ----AVENDVHVVGVSSLAAG----------HKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred CHHHHHHH----HHHcCCCEEEEeccchh----------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 34466555 24556789999986531 113567788999999988898888875
No 130
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=22.17 E-value=92 Score=21.04 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=15.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 214 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~ 214 (241)
+|++.|..|. ..+..+...|++
T Consensus 1 ~il~vc~~G~-------------~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGI-------------GSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcH-------------hHHHHHHHHHHH
Confidence 4789999995 266666666655
No 131
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=22.13 E-value=1.8e+02 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCcceeEcc
Q 026264 204 RSLIAAYLLVLNGYKNVYHLE 224 (241)
Q Consensus 204 rs~~aa~~L~~~Gy~nV~~l~ 224 (241)
.+..+++.|.+.|+++|.++.
T Consensus 137 agrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEe
Confidence 566788889999998788764
No 132
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.00 E-value=1.9e+02 Score=26.47 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHcCCcceeEccccHHHHHhC
Q 026264 203 SRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 233 (241)
Q Consensus 203 ~rs~~aa~~L~~~Gy~nV~~l~GG~~~W~~~ 233 (241)
..+......|++.|++ +.++.=|=.+|...
T Consensus 128 tTal~L~~~l~~~G~~-a~fvaTGQTGimia 157 (301)
T PF07755_consen 128 TTALELRRALRERGIN-AGFVATGQTGIMIA 157 (301)
T ss_dssp HHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred HHHHHHHHHHHHcCCC-ceEEecCCceEEEe
Confidence 4677788999999996 66665555666543
No 133
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=21.90 E-value=1.1e+02 Score=23.37 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH----HHcCCcceeEccccHHHH
Q 026264 179 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL----VLNGYKNVYHLEGGLYKW 230 (241)
Q Consensus 179 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L----~~~Gy~nV~~l~GG~~~W 230 (241)
++|++.|.+|. .+..++..+ ++.|++ +.+-..+...-
T Consensus 2 kkILlvCg~G~--------------STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 2 KKALIICAAGM--------------SSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred cEEEEECCCch--------------HHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 37999999998 344555544 456774 55544454443
No 134
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=21.56 E-value=1.4e+02 Score=26.18 Aligned_cols=41 Identities=37% Similarity=0.554 Sum_probs=29.0
Q ss_pred HHHhhhhhcCCCCCCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc
Q 026264 165 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 218 (241)
Q Consensus 165 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~ 218 (241)
+|++. ...... ..+|.|.|..|... .-..+|++++...|++
T Consensus 136 ~fv~i-~e~~~~-~g~iaVHCkaGlGR-----------TG~liAc~lmy~~g~t 176 (225)
T KOG1720|consen 136 EFVKI-VENAEK-GGKIAVHCKAGLGR-----------TGTLIACYLMYEYGMT 176 (225)
T ss_pred HHHHH-HHHHHh-cCeEEEEeccCCCc-----------hhHHHHHHHHHHhCCC
Confidence 66665 444444 88999999999632 1356688999998885
No 135
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=20.88 E-value=80 Score=24.25 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCC-eEEEEcCC
Q 026264 97 AKEALRLQKENN-FVILDVRP 116 (241)
Q Consensus 97 ~~el~~~l~~~~-~~lIDvR~ 116 (241)
.+++.+.+...+ -+|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 466777776655 48999995
No 136
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=20.79 E-value=70 Score=25.09 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHc--CCcceeEccccHHHHHhCCCC
Q 026264 187 TGGTMKPSQNLPEGQQSRSLIAAYLLVLN--GYKNVYHLEGGLYKWFKEELP 236 (241)
Q Consensus 187 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~--Gy~nV~~l~GG~~~W~~~g~p 236 (241)
+|..|||-|.. .-..+...+..+ +..=|++..|.-..|++...|
T Consensus 33 ~g~sWCPDC~~------aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~ 78 (119)
T PF06110_consen 33 TGQSWCPDCVA------AEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNP 78 (119)
T ss_dssp TS-BSSHHHHH------HHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSH
T ss_pred CCCcccHHHHH------HHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCC
Confidence 36778886662 222233444443 222245678888899876544
No 137
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=20.75 E-value=1.8e+02 Score=19.57 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCc
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 218 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~ 218 (241)
+|++|...+. ..+..+-.+|.+.|++
T Consensus 2 ~v~lys~~~C-------------p~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGC-------------PFCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCC-------------HHHHHHHHHHHHcCCC
Confidence 6888988765 3788899999998874
No 138
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.73 E-value=1.1e+02 Score=23.17 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=23.0
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH----HcCCcceeEccccHHHH
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LNGYKNVYHLEGGLYKW 230 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~----~~Gy~nV~~l~GG~~~W 230 (241)
+|++.|.+|. .+..++..++ +.|++ +.+...+...-
T Consensus 2 ~Ill~C~~Ga--------------SSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGG--------------TSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCC--------------CHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 5899998886 5666665554 46874 65555555543
No 139
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=20.42 E-value=1.4e+02 Score=22.07 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCchhhHHHHHHH----HHHHcCCcceeEccccHHHH
Q 026264 180 KIIVACATGGTMKPSQNLPEGQQSRSLIAAY----LLVLNGYKNVYHLEGGLYKW 230 (241)
Q Consensus 180 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~----~L~~~Gy~nV~~l~GG~~~W 230 (241)
+|++.|++|. ..|..++. .|.+.|++ +.+....+.+.
T Consensus 4 kILvvCgsG~-------------~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~ 44 (94)
T PRK10310 4 KIIVACGGAV-------------ATSTMAAEEIKELCQSHNIP-VELIQCRVNEI 44 (94)
T ss_pred eEEEECCCch-------------hHHHHHHHHHHHHHHHCCCe-EEEEEecHHHH
Confidence 6999999997 35555444 44557884 55544455444
No 140
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.39 E-value=2e+02 Score=25.85 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCcceeEcc
Q 026264 204 RSLIAAYLLVLNGYKNVYHLE 224 (241)
Q Consensus 204 rs~~aa~~L~~~Gy~nV~~l~ 224 (241)
.+..++..|...|..+|.++.
T Consensus 135 aarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 135 ASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred HHHHHHHHHHHCCCCEEEEEe
Confidence 465677888889998888764
No 141
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=20.34 E-value=1.6e+02 Score=20.66 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.7
Q ss_pred CCCeEEEEcCCCCC
Q 026264 177 KDAKIIVACATGGT 190 (241)
Q Consensus 177 ~~~~IVvyC~~G~~ 190 (241)
.+.+|+|.|..|..
T Consensus 38 ~~~pvlVHC~~G~g 51 (105)
T smart00404 38 SSGPVVVHCSAGVG 51 (105)
T ss_pred CCCCEEEEeCCCCC
Confidence 36799999999973
No 142
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=20.34 E-value=1.6e+02 Score=20.66 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.7
Q ss_pred CCCeEEEEcCCCCC
Q 026264 177 KDAKIIVACATGGT 190 (241)
Q Consensus 177 ~~~~IVvyC~~G~~ 190 (241)
.+.+|+|.|..|..
T Consensus 38 ~~~pvlVHC~~G~g 51 (105)
T smart00012 38 SSGPVVVHCSAGVG 51 (105)
T ss_pred CCCCEEEEeCCCCC
Confidence 36799999999973
No 143
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=20.00 E-value=1.1e+02 Score=28.90 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHcCCcceeEccccHH
Q 026264 178 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 228 (241)
Q Consensus 178 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~Gy~nV~~l~GG~~ 228 (241)
...++|||++-. .+..++..|.+.|+. +..+.|++.
T Consensus 242 ~~~~lVF~~t~~--------------~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKK--------------ECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCceEEEECCHH--------------HHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 456899999876 888999999999984 888888875
Done!