Query 026265
Match_columns 241
No_of_seqs 161 out of 1818
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15074 inosine/guanosine kin 100.0 1.4E-36 3.1E-41 266.5 24.4 219 15-241 33-263 (434)
2 PLN02379 pfkB-type carbohydrat 100.0 1.6E-36 3.4E-41 263.2 24.2 226 15-241 19-248 (367)
3 PLN02813 pfkB-type carbohydrat 100.0 1.4E-33 3.1E-38 248.6 24.5 217 15-241 69-298 (426)
4 PTZ00247 adenosine kinase; Pro 100.0 2.4E-30 5.1E-35 223.5 23.8 217 14-241 4-230 (345)
5 cd01168 adenosine_kinase Adeno 100.0 2.9E-30 6.4E-35 219.9 24.1 213 16-241 2-216 (312)
6 KOG2854 Possible pfkB family c 100.0 7.7E-31 1.7E-35 215.4 19.2 216 14-240 5-229 (343)
7 PLN02548 adenosine kinase 100.0 2.8E-27 6E-32 203.3 21.2 210 21-241 1-219 (332)
8 PRK11142 ribokinase; Provision 100.0 1.7E-27 3.8E-32 202.2 19.6 189 16-241 3-194 (306)
9 cd01174 ribokinase Ribokinase 100.0 1.9E-27 4.1E-32 200.6 19.4 188 17-241 1-191 (292)
10 PLN02967 kinase 100.0 3.4E-27 7.4E-32 212.0 19.3 167 72-241 236-412 (581)
11 PTZ00292 ribokinase; Provision 100.0 5.1E-27 1.1E-31 201.2 19.2 196 14-241 14-214 (326)
12 PLN02323 probable fructokinase 100.0 9E-27 2E-31 200.0 18.8 198 10-241 5-213 (330)
13 PLN02543 pfkB-type carbohydrat 99.9 4.8E-27 1E-31 208.9 17.2 206 15-241 125-343 (496)
14 cd01944 YegV_kinase_like YegV- 99.9 3.5E-26 7.6E-31 192.7 19.2 191 17-241 1-197 (289)
15 COG0524 RbsK Sugar kinases, ri 99.9 5.3E-26 1.2E-30 193.6 18.9 195 17-241 1-199 (311)
16 cd01942 ribokinase_group_A Rib 99.9 7.3E-26 1.6E-30 189.7 19.4 185 17-237 1-186 (279)
17 PRK09850 pseudouridine kinase; 99.9 9.3E-26 2E-30 192.4 18.6 190 14-241 3-196 (313)
18 PLN02341 pfkB-type carbohydrat 99.9 3.3E-25 7.1E-30 198.1 22.4 207 15-241 72-301 (470)
19 cd01166 KdgK 2-keto-3-deoxyglu 99.9 1.3E-25 2.9E-30 189.4 17.3 190 17-241 1-201 (294)
20 cd01939 Ketohexokinase Ketohex 99.9 4.5E-25 9.9E-30 186.1 18.7 185 17-239 1-193 (290)
21 cd01945 ribokinase_group_B Rib 99.9 1.3E-24 2.8E-29 182.7 19.6 187 17-241 1-188 (284)
22 TIGR02152 D_ribokin_bact ribok 99.9 3.3E-24 7.1E-29 181.0 18.9 183 24-241 2-187 (293)
23 cd01167 bac_FRK Fructokinases 99.9 3E-24 6.6E-29 181.3 18.4 187 17-241 1-197 (295)
24 cd01941 YeiC_kinase_like YeiC- 99.9 2.7E-24 5.8E-29 181.0 17.1 189 17-241 1-192 (288)
25 cd01947 Guanosine_kinase_like 99.9 1.2E-23 2.6E-28 175.2 19.2 180 17-240 1-180 (265)
26 PRK09954 putative kinase; Prov 99.9 1.1E-23 2.5E-28 183.0 19.1 188 15-241 57-249 (362)
27 PF00294 PfkB: pfkB family car 99.9 4.9E-24 1.1E-28 180.3 14.4 190 16-241 2-198 (301)
28 TIGR03828 pfkB 1-phosphofructo 99.9 2.7E-23 5.9E-28 176.3 17.6 180 21-241 4-192 (304)
29 cd01943 MAK32 MAK32 kinase. M 99.9 6.9E-24 1.5E-28 181.9 12.1 182 17-241 1-196 (328)
30 PRK09434 aminoimidazole ribosi 99.9 6.6E-23 1.4E-27 174.1 17.7 183 16-241 3-196 (304)
31 cd01940 Fructoselysine_kinase_ 99.9 9.5E-23 2.1E-27 169.6 17.0 153 75-236 18-171 (264)
32 cd01172 RfaE_like RfaE encodes 99.9 1.4E-22 3.1E-27 171.8 17.8 188 17-241 1-197 (304)
33 PRK09513 fruK 1-phosphofructok 99.9 3.4E-22 7.4E-27 170.3 18.7 185 16-241 3-196 (312)
34 PRK10294 6-phosphofructokinase 99.9 4.8E-22 1E-26 169.2 18.4 186 17-241 3-196 (309)
35 PRK13508 tagatose-6-phosphate 99.9 5.1E-22 1.1E-26 169.1 18.2 183 18-241 2-193 (309)
36 TIGR01231 lacC tagatose-6-phos 99.9 8.4E-22 1.8E-26 167.7 17.3 182 20-241 3-193 (309)
37 TIGR02198 rfaE_dom_I rfaE bifu 99.9 2.3E-21 5.1E-26 165.3 18.8 189 15-241 7-206 (315)
38 TIGR03168 1-PFK hexose kinase, 99.9 1.7E-21 3.8E-26 165.2 17.5 178 23-241 6-192 (303)
39 KOG2855 Ribokinase [Carbohydra 99.9 1.3E-21 2.8E-26 162.9 15.5 197 15-241 9-216 (330)
40 cd01164 FruK_PfkB_like 1-phosp 99.9 2.3E-21 4.9E-26 163.5 16.7 180 19-241 4-193 (289)
41 PRK09813 fructoselysine 6-kina 99.9 2.7E-21 5.9E-26 160.7 14.7 166 17-235 2-168 (260)
42 PRK11316 bifunctional heptose 99.9 9.1E-21 2E-25 170.3 17.7 190 15-241 10-204 (473)
43 COG1105 FruK Fructose-1-phosph 99.9 2.7E-20 5.8E-25 154.8 15.4 184 17-241 1-194 (310)
44 PLN02630 pfkB-type carbohydrat 99.8 5.1E-20 1.1E-24 157.8 16.8 179 9-239 5-195 (335)
45 cd01937 ribokinase_group_D Rib 99.8 7.6E-19 1.7E-23 145.4 16.1 167 17-238 1-168 (254)
46 cd01946 ribokinase_group_C Rib 99.8 2.1E-18 4.5E-23 144.6 15.8 157 74-241 20-179 (277)
47 KOG2947 Carbohydrate kinase [C 99.8 1.6E-18 3.6E-23 136.9 14.0 189 14-239 3-199 (308)
48 COG2870 RfaE ADP-heptose synth 99.7 4.5E-16 9.8E-21 131.5 15.9 191 14-241 9-204 (467)
49 cd00287 ribokinase_pfkB_like r 99.6 3.4E-15 7.3E-20 118.5 13.3 124 17-241 1-125 (196)
50 KOG3009 Predicted carbohydrate 99.1 5.3E-10 1.2E-14 96.3 10.1 160 2-237 327-486 (614)
51 PRK14039 ADP-dependent glucoki 97.2 0.035 7.6E-07 49.4 16.6 158 73-240 85-293 (453)
52 TIGR00196 yjeF_cterm yjeF C-te 97.2 0.0018 3.9E-08 54.2 8.1 69 167-241 89-157 (272)
53 cd01171 YXKO-related B.subtili 96.9 0.0032 6.9E-08 52.0 7.0 71 167-241 74-144 (254)
54 PRK07105 pyridoxamine kinase; 96.8 0.0026 5.6E-08 53.6 5.9 69 170-241 75-153 (284)
55 cd01170 THZ_kinase 4-methyl-5- 96.8 0.0032 6.9E-08 51.8 6.1 77 165-241 44-123 (242)
56 cd01173 pyridoxal_pyridoxamine 96.8 0.0027 5.8E-08 52.5 5.7 72 169-241 71-152 (254)
57 PRK12412 pyridoxal kinase; Rev 96.7 0.0037 8E-08 52.2 6.1 69 170-241 72-148 (268)
58 PRK08176 pdxK pyridoxal-pyrido 96.7 0.0055 1.2E-07 51.6 7.0 71 168-241 86-168 (281)
59 cd01169 HMPP_kinase 4-amino-5- 96.6 0.0082 1.8E-07 49.1 7.4 69 170-241 68-144 (242)
60 TIGR00687 pyridox_kin pyridoxa 96.6 0.004 8.6E-08 52.5 5.3 72 168-241 72-154 (286)
61 TIGR00097 HMP-P_kinase phospho 96.5 0.0084 1.8E-07 49.6 6.6 69 170-241 67-143 (254)
62 PRK06427 bifunctional hydroxy- 96.5 0.01 2.2E-07 49.4 7.0 69 170-241 73-149 (266)
63 PF08543 Phos_pyr_kin: Phospho 96.4 0.012 2.7E-07 48.4 6.7 69 170-241 60-135 (246)
64 TIGR00694 thiM hydroxyethylthi 96.3 0.01 2.2E-07 49.1 6.0 75 166-241 45-123 (249)
65 PF02110 HK: Hydroxyethylthiaz 96.3 0.0095 2.1E-07 48.9 5.7 75 166-241 45-123 (246)
66 PRK12413 phosphomethylpyrimidi 96.3 0.013 2.8E-07 48.4 6.5 132 98-241 5-145 (253)
67 PRK09355 hydroxyethylthiazole 96.2 0.012 2.7E-07 49.0 6.2 75 166-241 50-128 (263)
68 PRK05756 pyridoxamine kinase; 95.9 0.019 4.2E-07 48.3 5.9 72 168-241 72-154 (286)
69 COG2145 ThiM Hydroxyethylthiaz 95.8 0.029 6.4E-07 45.9 6.3 88 153-241 37-129 (265)
70 cd01938 ADPGK_ADPPFK ADP-depen 95.8 0.095 2.1E-06 46.9 10.0 159 73-240 100-285 (445)
71 PRK08573 phosphomethylpyrimidi 95.7 0.021 4.5E-07 51.4 5.7 67 172-241 73-146 (448)
72 COG0351 ThiD Hydroxymethylpyri 95.7 0.026 5.6E-07 46.7 5.6 68 171-241 73-148 (263)
73 PRK12616 pyridoxal kinase; Rev 95.7 0.033 7.1E-07 46.6 6.5 69 170-241 74-150 (270)
74 PLN02978 pyridoxal kinase 95.6 0.027 5.9E-07 48.1 5.7 69 171-241 87-165 (308)
75 PRK03979 ADP-specific phosphof 95.5 0.25 5.5E-06 44.3 11.5 159 73-240 96-305 (463)
76 PRK14038 ADP-dependent glucoki 95.5 0.73 1.6E-05 41.2 14.1 160 73-240 104-299 (453)
77 PTZ00344 pyridoxal kinase; Pro 95.4 0.034 7.3E-07 47.1 5.5 69 170-241 77-155 (296)
78 PF04587 ADP_PFK_GK: ADP-speci 94.9 0.082 1.8E-06 47.4 6.6 157 75-240 91-291 (444)
79 COG2240 PdxK Pyridoxal/pyridox 94.8 0.078 1.7E-06 44.2 5.9 73 166-241 69-152 (281)
80 TIGR02045 P_fruct_ADP ADP-spec 94.2 1.1 2.5E-05 40.0 12.1 157 75-240 85-291 (446)
81 PLN02898 HMP-P kinase/thiamin- 93.9 0.18 3.9E-06 46.0 6.7 69 170-241 78-154 (502)
82 PRK09517 multifunctional thiam 92.9 0.24 5.2E-06 47.6 6.1 68 171-241 311-385 (755)
83 PRK14713 multifunctional hydro 92.0 0.38 8.2E-06 44.3 6.0 69 170-241 98-173 (530)
84 PTZ00347 phosphomethylpyrimidi 91.2 0.66 1.4E-05 42.4 6.7 69 168-241 295-376 (504)
85 PF01118 Semialdhyde_dh: Semia 89.7 1.3 2.8E-05 32.0 6.0 95 100-208 2-100 (121)
86 PTZ00493 phosphomethylpyrimidi 89.4 0.95 2.1E-05 38.8 5.7 68 171-241 74-155 (321)
87 KOG2599 Pyridoxal/pyridoxine/p 88.7 0.84 1.8E-05 37.8 4.6 75 166-241 77-160 (308)
88 COG1618 Predicted nucleotide k 83.9 18 0.00039 28.0 9.7 109 96-205 7-138 (179)
89 PRK10565 putative carbohydrate 83.2 4.1 9E-05 37.3 6.8 67 168-241 318-384 (508)
90 KOG3974 Predicted sugar kinase 81.8 2.9 6.3E-05 34.6 4.6 74 165-241 96-173 (306)
91 PRK10076 pyruvate formate lyas 81.5 9.4 0.0002 30.7 7.6 66 170-241 38-110 (213)
92 PRK06444 prephenate dehydrogen 79.5 12 0.00027 29.7 7.5 23 101-123 4-27 (197)
93 KOG4184 Predicted sugar kinase 78.2 7.4 0.00016 33.7 6.1 162 72-240 136-316 (478)
94 TIGR00334 5S_RNA_mat_M5 ribonu 75.7 9.7 0.00021 29.6 5.7 63 170-236 22-84 (174)
95 PRK05671 aspartate-semialdehyd 74.7 33 0.00071 29.7 9.4 93 96-208 6-100 (336)
96 PRK05968 hypothetical protein; 73.8 63 0.0014 28.4 11.6 37 169-205 146-185 (389)
97 PRK08114 cystathionine beta-ly 72.6 46 0.00099 29.5 10.0 115 54-206 65-188 (395)
98 PRK06598 aspartate-semialdehyd 72.6 29 0.00063 30.5 8.5 96 96-208 3-101 (369)
99 PRK06728 aspartate-semialdehyd 72.5 34 0.00074 29.8 8.9 95 94-208 5-102 (347)
100 PF01256 Carb_kinase: Carbohyd 72.5 6 0.00013 32.5 4.1 70 166-241 63-132 (242)
101 PRK00278 trpC indole-3-glycero 72.0 14 0.0003 30.7 6.3 64 162-233 125-188 (260)
102 PRK05967 cystathionine beta-ly 71.6 72 0.0016 28.3 11.0 36 170-205 149-187 (395)
103 PF10087 DUF2325: Uncharacteri 70.7 14 0.0003 25.5 5.1 78 102-204 4-82 (97)
104 PRK08040 putative semialdehyde 70.5 51 0.0011 28.6 9.5 93 95-208 5-100 (336)
105 PRK08133 O-succinylhomoserine 70.4 55 0.0012 28.8 10.1 20 186-205 165-184 (390)
106 PRK07050 cystathionine beta-ly 69.3 79 0.0017 27.9 10.8 104 72-205 81-188 (394)
107 PLN02383 aspartate semialdehyd 68.7 44 0.00095 29.1 8.8 96 93-208 6-103 (344)
108 PRK06702 O-acetylhomoserine am 67.0 70 0.0015 28.8 10.0 114 54-205 64-185 (432)
109 PRK09028 cystathionine beta-ly 66.4 95 0.0021 27.5 10.9 36 170-205 146-184 (394)
110 COG1180 PflA Pyruvate-formate 64.5 40 0.00087 28.0 7.5 55 170-230 83-139 (260)
111 COG0136 Asd Aspartate-semialde 63.8 69 0.0015 27.7 8.9 96 95-207 2-99 (334)
112 TIGR02826 RNR_activ_nrdG3 anae 63.5 38 0.00082 25.5 6.6 57 171-235 62-119 (147)
113 PF00070 Pyr_redox: Pyridine n 63.3 21 0.00045 23.3 4.7 43 82-125 11-59 (80)
114 PRK11863 N-acetyl-gamma-glutam 60.0 96 0.0021 26.6 9.1 80 96-208 4-84 (313)
115 cd00614 CGS_like CGS_like: Cys 58.9 1.1E+02 0.0025 26.5 9.8 36 170-205 125-163 (369)
116 PRK08134 O-acetylhomoserine am 57.7 1.2E+02 0.0026 27.2 9.9 37 170-206 149-188 (433)
117 COG0063 Predicted sugar kinase 57.5 35 0.00076 28.8 6.0 70 167-241 98-168 (284)
118 COG0269 SgbH 3-hexulose-6-phos 56.8 49 0.0011 26.7 6.4 40 167-207 77-116 (217)
119 PRK07810 O-succinylhomoserine 55.8 1.5E+02 0.0032 26.3 10.3 36 170-205 155-193 (403)
120 PRK07582 cystathionine gamma-l 55.0 1.2E+02 0.0026 26.4 9.3 55 73-128 67-122 (366)
121 PRK14874 aspartate-semialdehyd 54.8 87 0.0019 27.0 8.2 93 95-208 2-97 (334)
122 PRK08249 cystathionine gamma-s 54.1 1.2E+02 0.0027 26.7 9.3 36 170-205 149-187 (398)
123 PRK08248 O-acetylhomoserine am 53.9 1.7E+02 0.0036 26.3 10.1 36 170-205 149-187 (431)
124 PF00218 IGPS: Indole-3-glycer 53.5 30 0.00066 28.7 4.9 67 160-234 121-187 (254)
125 PLN02968 Probable N-acetyl-gam 53.3 68 0.0015 28.3 7.4 98 95-208 39-137 (381)
126 PRK05613 O-acetylhomoserine am 52.7 1.7E+02 0.0037 26.3 10.0 22 185-206 173-194 (437)
127 TIGR02742 TrbC_Ftype type-F co 52.5 35 0.00075 25.2 4.6 30 173-203 2-31 (130)
128 TIGR00978 asd_EA aspartate-sem 52.4 1.1E+02 0.0024 26.4 8.5 101 97-208 3-107 (341)
129 TIGR01328 met_gam_lyase methio 52.0 1.7E+02 0.0036 25.8 10.0 37 170-206 144-183 (391)
130 PRK08247 cystathionine gamma-s 52.0 1.6E+02 0.0035 25.6 11.4 36 170-205 136-174 (366)
131 PF09673 TrbC_Ftype: Type-F co 51.5 30 0.00066 24.7 4.1 29 174-203 2-30 (113)
132 PRK07324 transaminase; Validat 51.4 1.6E+02 0.0035 25.5 9.8 35 170-204 153-193 (373)
133 PF00919 UPF0004: Uncharacteri 50.7 82 0.0018 21.8 6.8 59 168-231 34-98 (98)
134 TIGR01325 O_suc_HS_sulf O-succ 50.1 1.8E+02 0.0038 25.5 10.2 36 170-205 139-177 (380)
135 TIGR01324 cysta_beta_ly_B cyst 50.0 1.8E+02 0.0039 25.5 11.2 114 54-205 53-173 (377)
136 TIGR01296 asd_B aspartate-semi 49.9 1.4E+02 0.0031 25.8 8.8 92 97-208 2-95 (339)
137 COG1646 Predicted phosphate-bi 49.2 27 0.0006 28.5 3.9 43 166-208 37-81 (240)
138 PRK13957 indole-3-glycerol-pho 48.7 51 0.0011 27.3 5.5 69 159-235 113-181 (247)
139 TIGR03128 RuMP_HxlA 3-hexulose 47.3 88 0.0019 24.5 6.7 60 167-232 73-133 (206)
140 cd00562 NifX_NifB This CD repr 45.6 52 0.0011 22.3 4.6 40 79-124 47-86 (102)
141 TIGR01851 argC_other N-acetyl- 45.3 1.9E+02 0.004 24.9 8.5 38 167-208 46-83 (310)
142 PRK13018 cell division protein 45.0 89 0.0019 27.6 6.7 111 74-201 32-146 (378)
143 COG1712 Predicted dinucleotide 44.8 58 0.0013 26.7 5.0 108 99-206 2-121 (255)
144 COG1889 NOP1 Fibrillarin-like 43.6 71 0.0015 25.7 5.3 68 151-231 82-151 (231)
145 PRK13730 conjugal transfer pil 42.2 54 0.0012 26.3 4.4 32 172-204 92-123 (212)
146 KOG0257 Kynurenine aminotransf 42.1 61 0.0013 28.8 5.2 48 157-204 159-212 (420)
147 TIGR01745 asd_gamma aspartate- 42.1 1.6E+02 0.0035 25.9 7.8 96 96-208 2-100 (366)
148 cd07242 Glo_EDI_BRP_like_6 Thi 41.5 79 0.0017 22.1 5.2 44 108-151 81-127 (128)
149 PRK08818 prephenate dehydrogen 41.2 2.5E+02 0.0054 24.7 9.7 78 100-208 7-91 (370)
150 TIGR01329 cysta_beta_ly_E cyst 41.2 2.5E+02 0.0053 24.6 9.7 36 170-205 131-169 (378)
151 smart00642 Aamy Alpha-amylase 41.2 38 0.00081 26.0 3.5 26 182-207 68-93 (166)
152 cd04919 ACT_AK-Hom3_2 ACT doma 40.2 65 0.0014 19.8 4.0 43 98-140 2-49 (66)
153 PF00128 Alpha-amylase: Alpha 40.1 41 0.0009 27.7 3.9 25 182-206 50-74 (316)
154 TIGR01326 OAH_OAS_sulfhy OAH/O 39.8 2.7E+02 0.0059 24.7 9.9 20 186-205 161-180 (418)
155 PLN02242 methionine gamma-lyas 39.4 2.7E+02 0.0059 24.8 9.1 35 171-205 164-201 (418)
156 cd07238 Glo_EDI_BRP_like_5 Thi 39.1 95 0.0021 21.2 5.2 42 109-150 68-109 (112)
157 PRK15447 putative protease; Pr 39.0 1.6E+02 0.0036 24.9 7.4 68 169-237 27-101 (301)
158 PRK13307 bifunctional formalde 38.9 1.1E+02 0.0024 27.2 6.4 57 169-231 249-305 (391)
159 PRK05939 hypothetical protein; 38.8 2.8E+02 0.006 24.5 11.1 36 170-205 131-169 (397)
160 PRK00436 argC N-acetyl-gamma-g 38.6 2.2E+02 0.0047 24.7 8.2 38 167-208 65-102 (343)
161 PRK04169 geranylgeranylglycery 38.6 89 0.0019 25.5 5.4 42 167-208 29-71 (232)
162 PF02579 Nitro_FeMo-Co: Dinitr 38.4 29 0.00063 23.3 2.3 43 76-124 36-78 (94)
163 PRK07504 O-succinylhomoserine 38.3 2.8E+02 0.0061 24.4 9.4 37 169-205 149-188 (398)
164 TIGR01850 argC N-acetyl-gamma- 38.2 2.7E+02 0.0058 24.2 8.8 36 169-208 67-102 (346)
165 cd07266 HPCD_N_class_II N-term 37.6 85 0.0018 21.7 4.8 48 103-150 68-116 (121)
166 PF12681 Glyoxalase_2: Glyoxal 37.4 1.1E+02 0.0024 20.4 5.3 39 109-147 67-105 (108)
167 cd08364 FosX FosX, a fosfomyci 37.2 63 0.0014 23.2 4.1 44 108-151 78-121 (131)
168 TIGR02494 PFLE_PFLC glycyl-rad 37.2 1.8E+02 0.0038 24.3 7.3 53 172-230 127-181 (295)
169 PF00266 Aminotran_5: Aminotra 36.7 1.9E+02 0.0042 24.8 7.7 108 73-207 63-179 (371)
170 PRK15394 4-deoxy-4-formamido-L 36.6 55 0.0012 27.8 4.0 35 82-117 20-54 (296)
171 PF03129 HGTP_anticodon: Antic 36.3 1.2E+02 0.0025 20.3 5.1 50 184-237 16-65 (94)
172 cd02068 radical_SAM_B12_BD B12 36.0 1.4E+02 0.0029 21.4 5.7 62 169-236 38-101 (127)
173 cd08363 FosB FosB, a fosfomyci 35.8 53 0.0011 23.6 3.5 46 108-153 71-116 (131)
174 cd07251 Glo_EDI_BRP_like_10 Th 35.4 1.1E+02 0.0024 20.9 5.1 41 108-149 77-118 (121)
175 PRK06901 aspartate-semialdehyd 35.3 1.6E+02 0.0035 25.4 6.7 93 97-208 6-98 (322)
176 COG0489 Mrp ATPases involved i 35.2 90 0.002 26.0 5.1 34 82-119 75-108 (265)
177 cd08345 Fosfomycin_RP Fosfomyc 34.5 1E+02 0.0022 20.9 4.7 42 108-149 67-108 (113)
178 PRK07811 cystathionine gamma-s 34.4 3.2E+02 0.007 24.0 9.0 36 170-205 146-184 (388)
179 PRK04296 thymidine kinase; Pro 34.2 1.6E+02 0.0034 22.9 6.2 34 170-203 78-112 (190)
180 PF13460 NAD_binding_10: NADH( 33.9 1.7E+02 0.0037 22.0 6.3 90 105-206 7-98 (183)
181 COG1058 CinA Predicted nucleot 33.7 1.2E+02 0.0025 25.3 5.4 46 82-130 23-68 (255)
182 COG0373 HemA Glutamyl-tRNA red 33.6 93 0.002 27.8 5.1 121 92-238 172-299 (414)
183 cd07265 2_3_CTD_N N-terminal d 33.4 1.2E+02 0.0027 21.0 5.0 41 109-149 75-116 (122)
184 COG0075 Serine-pyruvate aminot 33.2 3.5E+02 0.0076 24.0 10.5 103 78-207 63-171 (383)
185 COG0520 csdA Selenocysteine ly 33.2 94 0.002 27.7 5.1 59 169-233 161-222 (405)
186 cd04726 KGPDC_HPS 3-Keto-L-gul 33.1 2E+02 0.0044 22.2 6.7 35 168-203 75-109 (202)
187 PF00265 TK: Thymidine kinase; 33.0 2.3E+02 0.005 21.9 9.5 100 98-202 5-108 (176)
188 cd00851 MTH1175 This uncharact 32.6 99 0.0022 21.0 4.3 40 79-124 49-88 (103)
189 TIGR00065 ftsZ cell division p 32.2 1.7E+02 0.0037 25.5 6.5 32 74-106 21-52 (349)
190 cd04868 ACT_AK-like ACT domain 32.2 1E+02 0.0023 17.7 5.3 32 108-139 16-47 (60)
191 TIGR01768 GGGP-family geranylg 31.5 38 0.00083 27.5 2.2 42 167-208 24-66 (223)
192 TIGR01125 MiaB-like tRNA modif 31.4 1.9E+02 0.004 25.9 6.8 60 168-232 34-96 (430)
193 TIGR01140 L_thr_O3P_dcar L-thr 31.1 3.3E+02 0.0071 23.1 8.9 23 182-204 143-165 (330)
194 PRK14619 NAD(P)H-dependent gly 31.1 3.2E+02 0.007 23.0 8.8 25 100-124 7-31 (308)
195 PF00834 Ribul_P_3_epim: Ribul 30.6 1E+02 0.0022 24.5 4.5 53 169-231 79-133 (201)
196 PF01408 GFO_IDH_MocA: Oxidore 30.6 33 0.00073 24.0 1.6 18 101-118 4-21 (120)
197 cd04922 ACT_AKi-HSDH-ThrA_2 AC 30.6 1.1E+02 0.0024 18.6 3.9 33 108-140 17-49 (66)
198 cd07247 SgaA_N_like N-terminal 30.5 1.6E+02 0.0035 19.9 5.2 39 109-147 72-110 (114)
199 cd07240 ED_TypeI_classII_N N-t 30.4 1.3E+02 0.0029 20.4 4.8 48 103-150 65-112 (117)
200 cd04915 ACT_AK-Ectoine_2 ACT d 30.3 1.4E+02 0.0031 18.7 5.3 44 97-140 2-49 (66)
201 PRK14106 murD UDP-N-acetylmura 30.1 1.6E+02 0.0035 26.2 6.3 44 77-122 12-55 (450)
202 PRK11199 tyrA bifunctional cho 30.0 3.1E+02 0.0067 24.0 7.8 25 100-124 101-126 (374)
203 PRK11263 cardiolipin synthase 29.9 1.7E+02 0.0037 26.1 6.2 47 79-126 47-94 (411)
204 smart00859 Semialdhyde_dh Semi 29.8 2E+02 0.0044 20.2 6.8 27 100-126 2-30 (122)
205 PF03456 uDENN: uDENN domain; 29.7 71 0.0015 20.0 2.9 40 110-150 21-60 (65)
206 COG0240 GpsA Glycerol-3-phosph 29.3 1.7E+02 0.0038 25.3 5.9 21 100-120 4-24 (329)
207 PRK09330 cell division protein 28.7 2.5E+02 0.0054 24.9 6.9 32 74-106 17-48 (384)
208 cd07233 Glyoxalase_I Glyoxalas 28.7 1.5E+02 0.0033 20.2 4.8 38 109-147 81-118 (121)
209 cd08354 Glo_EDI_BRP_like_13 Th 28.4 1.7E+02 0.0038 19.9 5.1 40 109-149 80-119 (122)
210 PRK08574 cystathionine gamma-s 28.3 4.1E+02 0.0089 23.3 10.2 36 170-205 137-175 (385)
211 PRK10785 maltodextrin glucosid 28.3 72 0.0016 30.0 3.7 25 182-206 224-248 (598)
212 PRK03659 glutathione-regulated 27.8 2.1E+02 0.0045 27.0 6.7 118 100-236 403-522 (601)
213 cd07245 Glo_EDI_BRP_like_9 Thi 27.8 1.1E+02 0.0024 20.3 3.9 37 109-146 75-111 (114)
214 PF02593 dTMP_synthase: Thymid 27.7 1.6E+02 0.0035 23.8 5.1 61 168-231 49-109 (217)
215 PRK06767 methionine gamma-lyas 27.7 4.2E+02 0.009 23.2 9.5 36 170-205 146-184 (386)
216 cd04918 ACT_AK1-AT_2 ACT domai 27.7 1.6E+02 0.0034 18.3 4.8 33 108-140 16-48 (65)
217 COG0436 Aspartate/tyrosine/aro 27.5 89 0.0019 27.6 4.0 37 169-205 162-204 (393)
218 PRK08745 ribulose-phosphate 3- 27.2 1.4E+02 0.003 24.2 4.8 52 169-230 84-137 (223)
219 PRK11145 pflA pyruvate formate 27.0 2.2E+02 0.0047 23.0 6.0 56 172-231 72-129 (246)
220 PRK08883 ribulose-phosphate 3- 27.0 1.5E+02 0.0033 23.9 5.0 52 169-230 80-133 (220)
221 cd07263 Glo_EDI_BRP_like_16 Th 26.9 1.8E+02 0.004 19.5 5.0 40 109-149 78-117 (119)
222 PRK08005 epimerase; Validated 26.9 1.4E+02 0.0031 23.9 4.7 52 169-230 80-133 (210)
223 PRK07417 arogenate dehydrogena 26.8 1.8E+02 0.004 24.1 5.7 23 100-122 3-25 (279)
224 PF09140 MipZ: ATPase MipZ; I 26.8 91 0.002 25.9 3.6 32 82-117 18-49 (261)
225 PF12119 DUF3581: Protein of u 26.8 2.4E+02 0.0051 22.7 5.7 60 45-106 10-75 (218)
226 PRK09722 allulose-6-phosphate 26.7 1.6E+02 0.0036 23.9 5.1 53 169-230 81-135 (229)
227 cd00861 ProRS_anticodon_short 26.6 1.8E+02 0.004 19.1 4.8 24 184-207 18-41 (94)
228 cd07261 Glo_EDI_BRP_like_11 Th 26.5 2.1E+02 0.0046 19.4 6.5 41 108-149 72-112 (114)
229 PRK05994 O-acetylhomoserine am 26.1 4.7E+02 0.01 23.3 10.1 37 170-206 148-187 (427)
230 PRK11478 putative lyase; Provi 25.9 2.1E+02 0.0045 19.9 5.2 39 109-147 86-124 (129)
231 PF04016 DUF364: Domain of unk 25.7 47 0.001 25.0 1.7 45 163-207 55-99 (147)
232 PRK09814 beta-1,6-galactofuran 25.3 4.2E+02 0.0091 22.5 8.2 41 168-208 62-103 (333)
233 PRK04148 hypothetical protein; 25.3 1.8E+02 0.0039 21.6 4.7 37 166-204 73-109 (134)
234 PRK06234 methionine gamma-lyas 25.3 4.7E+02 0.01 23.0 10.2 53 73-126 81-134 (400)
235 PRK08664 aspartate-semialdehyd 25.1 4.5E+02 0.0098 22.7 9.4 39 166-208 72-110 (349)
236 PF01973 MAF_flag10: Protein o 25.0 93 0.002 23.6 3.3 27 75-101 135-162 (170)
237 PF13740 ACT_6: ACT domain; PD 24.7 1.7E+02 0.0036 18.9 4.1 32 98-129 3-36 (76)
238 TIGR03576 pyridox_MJ0158 pyrid 24.4 4.6E+02 0.01 22.6 10.3 50 72-122 72-121 (346)
239 PLN00203 glutamyl-tRNA reducta 24.4 1.8E+02 0.0039 26.9 5.5 38 84-121 249-290 (519)
240 PRK13802 bifunctional indole-3 24.3 1.3E+02 0.0029 28.9 4.7 65 162-234 125-189 (695)
241 PRK09427 bifunctional indole-3 24.3 47 0.001 30.1 1.7 63 165-235 127-189 (454)
242 PRK04101 fosfomycin resistance 24.2 2.1E+02 0.0045 20.6 5.0 43 108-150 75-117 (139)
243 PF01113 DapB_N: Dihydrodipico 24.2 2.7E+02 0.0059 19.9 10.0 93 100-205 3-99 (124)
244 cd07235 MRD Mitomycin C resist 24.2 2E+02 0.0043 19.8 4.8 39 109-148 80-119 (122)
245 COG2518 Pcm Protein-L-isoaspar 24.1 3.8E+02 0.0083 21.5 7.9 74 41-122 47-120 (209)
246 TIGR00089 RNA modification enz 24.1 2.8E+02 0.006 24.7 6.6 62 168-235 34-102 (429)
247 TIGR00507 aroE shikimate 5-deh 23.9 4.1E+02 0.0089 21.9 9.4 41 76-120 123-164 (270)
248 PRK06545 prephenate dehydrogen 23.7 3.1E+02 0.0068 23.8 6.7 25 100-124 3-27 (359)
249 cd00858 GlyRS_anticodon GlyRS 23.7 2.7E+02 0.0059 19.7 5.6 38 168-205 24-63 (121)
250 PTZ00170 D-ribulose-5-phosphat 23.6 1.8E+02 0.004 23.5 4.9 38 169-207 87-124 (228)
251 PLN02460 indole-3-glycerol-pho 23.6 75 0.0016 27.6 2.7 63 165-234 198-260 (338)
252 COG2226 UbiE Methylase involve 23.5 2.3E+02 0.0049 23.3 5.4 68 170-239 119-195 (238)
253 TIGR02964 xanthine_xdhC xanthi 23.3 83 0.0018 25.9 2.9 54 80-134 171-225 (246)
254 cd07255 Glo_EDI_BRP_like_12 Th 23.3 2.6E+02 0.0055 19.2 5.3 43 107-151 76-118 (125)
255 cd08362 BphC5-RrK37_N_like N-t 23.3 2.5E+02 0.0053 19.1 5.1 43 109-151 72-116 (120)
256 PF13676 TIR_2: TIR domain; PD 23.1 41 0.00088 22.9 0.9 53 174-229 1-53 (102)
257 PRK07812 O-acetylhomoserine am 23.0 5.6E+02 0.012 23.0 9.5 36 170-205 155-193 (436)
258 PRK03673 hypothetical protein; 22.6 2.5E+02 0.0054 25.0 5.8 46 81-129 22-67 (396)
259 PRK14057 epimerase; Provisiona 22.5 1.9E+02 0.0041 24.0 4.8 126 93-230 17-159 (254)
260 cd00331 IGPS Indole-3-glycerol 22.5 3.9E+02 0.0085 21.1 6.8 42 166-207 90-131 (217)
261 cd03112 CobW_like The function 22.1 3.4E+02 0.0074 20.3 6.9 64 169-234 85-156 (158)
262 PF08973 TM1506: Domain of unk 22.0 1.7E+02 0.0038 21.7 4.0 49 74-130 50-98 (134)
263 COG0036 Rpe Pentose-5-phosphat 22.0 2.2E+02 0.0047 23.1 4.9 53 169-231 83-137 (220)
264 KOG2380 Prephenate dehydrogena 22.0 3.2E+02 0.0069 24.1 6.1 116 96-231 51-166 (480)
265 COG0287 TyrA Prephenate dehydr 21.9 4.8E+02 0.01 21.9 7.3 95 99-208 5-101 (279)
266 PRK08091 ribulose-phosphate 3- 21.9 2.2E+02 0.0047 23.2 5.0 52 169-230 90-145 (228)
267 PF08659 KR: KR domain; Inter 21.8 2.5E+02 0.0054 21.4 5.2 51 78-129 9-61 (181)
268 cd00609 AAT_like Aspartate ami 21.6 4.7E+02 0.01 21.7 9.9 36 170-205 132-173 (350)
269 PF13478 XdhC_C: XdhC Rossmann 21.5 19 0.00042 26.7 -1.1 42 92-134 76-117 (136)
270 cd08352 Glo_EDI_BRP_like_1 Thi 21.5 2.4E+02 0.0051 19.2 4.7 38 110-147 84-121 (125)
271 TIGR02026 BchE magnesium-proto 21.4 2.8E+02 0.0061 25.4 6.2 63 169-237 62-127 (497)
272 PLN00175 aminotransferase fami 21.4 5.7E+02 0.012 22.5 10.4 36 170-205 187-228 (413)
273 PRK09276 LL-diaminopimelate am 21.4 1.4E+02 0.0031 25.8 4.2 37 169-205 165-207 (385)
274 PRK10669 putative cation:proto 21.4 2.4E+02 0.0052 26.2 5.8 117 102-237 422-540 (558)
275 COG0826 Collagenase and relate 21.3 3E+02 0.0064 24.0 6.0 69 168-237 24-104 (347)
276 PRK11866 2-oxoacid ferredoxin 21.3 5E+02 0.011 21.8 9.9 124 80-207 62-192 (279)
277 cd08344 MhqB_like_N N-terminal 21.3 2.3E+02 0.005 19.3 4.6 40 109-150 68-107 (112)
278 PRK11869 2-oxoacid ferredoxin 21.2 5E+02 0.011 21.9 9.8 124 80-207 63-193 (280)
279 COG2893 ManX Phosphotransferas 21.2 1.1E+02 0.0023 23.0 2.8 29 74-103 65-93 (143)
280 cd08349 BLMA_like Bleomycin bi 21.2 2.4E+02 0.0052 18.8 4.6 40 109-148 69-109 (112)
281 TIGR03540 DapC_direct LL-diami 21.1 1.3E+02 0.0029 26.0 3.9 37 169-205 163-205 (383)
282 PRK08861 cystathionine gamma-s 21.1 5.8E+02 0.012 22.5 9.9 37 170-206 138-177 (388)
283 cd07241 Glo_EDI_BRP_like_3 Thi 21.1 2.8E+02 0.0061 18.8 6.6 46 102-147 77-122 (125)
284 COG2248 Predicted hydrolase (m 21.0 4.6E+02 0.01 22.0 6.6 73 133-205 164-247 (304)
285 cd08359 Glo_EDI_BRP_like_22 Th 20.9 2.6E+02 0.0056 19.0 4.8 39 109-148 77-116 (119)
286 PRK15452 putative protease; Pr 20.8 3.6E+02 0.0079 24.4 6.6 41 165-205 18-67 (443)
287 cd09012 Glo_EDI_BRP_like_24 Th 20.7 2.5E+02 0.0054 19.4 4.7 41 109-150 82-122 (124)
288 TIGR03537 DapC succinyldiamino 20.7 1.4E+02 0.003 25.5 3.9 37 169-205 135-177 (350)
289 cd04924 ACT_AK-Arch_2 ACT doma 20.6 2.1E+02 0.0045 17.2 5.6 43 98-140 2-49 (66)
290 PF13242 Hydrolase_like: HAD-h 20.3 2.1E+02 0.0045 18.2 3.8 57 168-236 19-75 (75)
291 TIGR01579 MiaB-like-C MiaB-lik 20.1 3.4E+02 0.0073 24.0 6.3 62 168-236 31-98 (414)
292 PRK05957 aspartate aminotransf 20.0 2.4E+02 0.0051 24.6 5.3 36 170-205 160-201 (389)
No 1
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.4e-36 Score=266.47 Aligned_cols=219 Identities=24% Similarity=0.337 Sum_probs=189.5
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcC
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG 94 (241)
.++|+++| |++||+.+.++++||+++.+++|.+++|+.++...+++.+...+ ......+||+++|+|++++ +||
T Consensus 33 ~~~v~g~G-NaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~----~~~~~~~GGsaaNtA~~lA-rLG 106 (434)
T PRK15074 33 RTYIVGID-QTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNN----LITHEFAGGTIGNTLHNYS-VLA 106 (434)
T ss_pred CCcEEEeC-CceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhcc----ccccccCCCHHHHHHHHHH-HcC
Confidence 48999999 99999999999999999999999999999999999999886321 1146679999999999999 896
Q ss_pred -CceeEEeeecCC-hhHHHHHHHHH--hCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCC
Q 026265 95 -VPCGLIGAYGDD-QQGQLFVSNMQ--FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (241)
Q Consensus 95 -~~~~~vg~vG~D-~~g~~i~~~l~--~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~ 170 (241)
.++.|+|.||+| .+|+++++.|+ +.||++.++...+++|+.|+++++++|+|++++++|+...+++++++.+.+++
T Consensus 107 G~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~~~i~~ 186 (434)
T PRK15074 107 DDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPEDVIAG 186 (434)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCHhHhcc
Confidence 999999999999 69999999997 68999998876656899999999999999999999999999999998888999
Q ss_pred ccEEEEE-eccc------cHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHh-hhcCCCccEEecCHHHHHhhhC
Q 026265 171 SKWLVLR-FGMF------NFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQ-LLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 171 ~~~v~~~-~~~~------~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~-~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++++|++ +.+. ..+++.++++.|++.|++++||++...++...++.+.+ +++ ++|++++|++|++.|+|
T Consensus 187 a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~--~vDILf~NeeEa~~LtG 263 (434)
T PRK15074 187 ASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKE--HVSILAMNEDEAEALTG 263 (434)
T ss_pred CCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHh--cCCEEEcCHHHHHHHhC
Confidence 9999999 5432 25778899999999999999999987654334444433 344 89999999999999875
No 2
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.6e-36 Score=263.21 Aligned_cols=226 Identities=80% Similarity=1.263 Sum_probs=199.3
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCC---CCCCCceeecCChHHHHHHHHHh
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHIL---DEPSPIKTIAGGSVTNTIRGLSV 91 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~GG~~~N~a~~la~ 91 (241)
+++|++||+|++||+++.++++||+++.+++|.+++|+.++...+++++..+.. .+.......+||+++|++++++
T Consensus 19 ~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la- 97 (367)
T PLN02379 19 PPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLS- 97 (367)
T ss_pred CCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHH-
Confidence 578999988999999999999999999999999999999999999999864321 1123477889999999999998
Q ss_pred h-cCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCC
Q 026265 92 G-FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (241)
Q Consensus 92 ~-LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~ 170 (241)
+ ||.++.++|.||+|.+|+++++.|++.||++.++...+++|+.|+++++++|+|++..+.++...++++++..+.+++
T Consensus 98 ~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~~~~~~ 177 (367)
T PLN02379 98 AGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTKEDFKG 177 (367)
T ss_pred HhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCHHHHhc
Confidence 6 999999999999999999999999999999888766556899999999999999998877877788888888788999
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++|+|++|.+.+.+.+.++++.++++|+++++|+++..++.++++.+++++...++|++|+|++|++.|+|
T Consensus 178 ~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~ 248 (367)
T PLN02379 178 SKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLR 248 (367)
T ss_pred CCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhc
Confidence 99999996545778899999999999999999999887777888889988842389999999999998863
No 3
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.4e-33 Score=248.63 Aligned_cols=217 Identities=25% Similarity=0.400 Sum_probs=188.8
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcC
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG 94 (241)
.++|+++| ++++|+++.++++|++++.+|++++++|+.++...+++.+.. ......+||+++|+|++++ |||
T Consensus 69 ~~~vl~iG-~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~------~~~~~~~GG~~~N~Avala-rLG 140 (426)
T PLN02813 69 RWDVLGLG-QAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDG------CSYKASAGGSLSNTLVALA-RLG 140 (426)
T ss_pred cceEEEeC-CceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhc------cCceEecCcHHHHHHHHHH-Hhc
Confidence 48999999 999999999999999999999999999999999888887653 3678999999999999999 899
Q ss_pred --------CceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChh
Q 026265 95 --------VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAE 166 (241)
Q Consensus 95 --------~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~ 166 (241)
.++.|+|.||+|.+|+++++.|++.||++.++.+.+.+|+.++++++++|+|+++.+.+++..++.+++..+
T Consensus 141 ~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~~~ 220 (426)
T PLN02813 141 SQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCLAS 220 (426)
T ss_pred cccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCccccCHH
Confidence 799999999999999999999999999998887665689999999999999999999998877877777667
Q ss_pred hhCCccEEEEE-ecc-cc--HHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhh-cCCCccEEecCHHHHHhhhC
Q 026265 167 DVKGSKWLVLR-FGM-FN--FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLL-ESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 167 ~i~~~~~v~~~-~~~-~~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l-~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+++++++|++ +.+ .+ .+.+.++++.+++.|++++||+++..+...+++.+++.+ + ++|++++|++|++.|+|
T Consensus 221 ~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~--~vDil~~Ne~Ea~~l~g 298 (426)
T PLN02813 221 AISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGN--YADILFANSDEARALCG 298 (426)
T ss_pred HHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHh--cCCEEEeCHHHHHHHhC
Confidence 78999999998 432 23 367888999999999999999987543334566666655 5 89999999999999875
No 4
>PTZ00247 adenosine kinase; Provisional
Probab=99.98 E-value=2.4e-30 Score=223.49 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=176.5
Q ss_pred CCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
...+|+++| ++++|++++++++|+.++.+.+|+..+++. ....+..++.. ..+....+||+++|+|++++ +|
T Consensus 4 ~~~~i~~iG-~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~-----~~~~~~~~GG~~~N~A~~la-~l 75 (345)
T PTZ00247 4 APKKLLGFG-NPLLDISAHVSDEFLEKYGLELGSAILAEE-KQLPIFEELES-----IPNVSYVPGGSALNTARVAQ-WM 75 (345)
T ss_pred CCceEEEEC-CceEEEEEeeCHHHHHHcCCCCCceeechH-HHHHHHHHHHh-----ccCceecCCCHHHHHHHHHH-HH
Confidence 357899999 999999999999999998667887777663 23333333221 13678999999999999999 78
Q ss_pred C---C-ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCCh----
Q 026265 94 G---V-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA---- 165 (241)
Q Consensus 94 G---~-~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~---- 165 (241)
| . ++.|+|.||+|.+|+++++.|++.||++.++...+.+|++++++++ +|+|+++.+++++..+++++++.
T Consensus 76 g~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~-~~~r~~~~~~ga~~~l~~~~i~~~~~~ 154 (345)
T PTZ00247 76 LQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVC-GKERSLVANLGAANHLSAEHMQSHAVQ 154 (345)
T ss_pred hcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEc-CCCcccccCcchhhcCChHHcCcHHHH
Confidence 6 4 8999999999999999999999999999887644448999999997 48999998899888898888764
Q ss_pred hhhCCccEEEEE-ecc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 166 EDVKGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 166 ~~i~~~~~v~~~-~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+++++++|++ +.+ .+.+.+..+++.+++.|+++++|++++......++.+.++++ ++|++++|++|++.|+|
T Consensus 155 ~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 155 EAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLP--YVDILFGNEEEAKTFAK 230 (345)
T ss_pred HHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhh
Confidence 368899999999 322 367889999999999999999998755322233455777888 99999999999999875
No 5
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.98 E-value=2.9e-30 Score=219.92 Aligned_cols=213 Identities=36% Similarity=0.565 Sum_probs=177.3
Q ss_pred CeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC
Q 026265 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (241)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~ 95 (241)
.+|+++| ++++|+++++++..+......+|.+.+.+.+........ .+....+||+++|+|++++ |||.
T Consensus 2 ~~v~~vG-~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~GG~~~N~A~~la-~LG~ 70 (312)
T cd01168 2 YDVLGLG-NALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAK---------LPVKYIAGGSAANTIRGAA-ALGG 70 (312)
T ss_pred ceEEEEC-CCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHh---------cCccccCCCHHHHHHHHHH-HhcC
Confidence 4699999 999999999977666666556677776655555444322 1467899999999999999 8999
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEE
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~ 175 (241)
++.++|.+|+|.+|+.+++.|++.||++.++...+.+|+.++++++++|+|+++.++++...++++++..+.+++++++|
T Consensus 71 ~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 150 (312)
T cd01168 71 SAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDWSLLAKAKYLY 150 (312)
T ss_pred CeEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCHHHHccCCEEE
Confidence 99999999999999999999999999999887654589999999998899999988888888998888877899999999
Q ss_pred EE-ecc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 176 LR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 176 ~~-~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++ +.. .+.+.+..+++.+++.|.++++|++++.....+++.+.++++ ++|++++|++|++.|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~d~l~~n~~E~~~l~~ 216 (312)
T cd01168 151 LEGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLP--YVDILFGNEEEAEALAE 216 (312)
T ss_pred EEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhC
Confidence 99 322 345888899999999999999999754322334555778887 99999999999999875
No 6
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.98 E-value=7.7e-31 Score=215.38 Aligned_cols=216 Identities=27% Similarity=0.356 Sum_probs=190.1
Q ss_pred CCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
++.-.+++| |+++|+.+.++++||++|++..|++.+++.+.... +.++. +..+....+||++.|++++++ ++
T Consensus 5 ~E~il~G~g-npLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~-~~E~~-----~~~~~~~~AGGs~qNt~R~aq-~~ 76 (343)
T KOG2854|consen 5 PEGILVGLG-NPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGL-FDELM-----EGFNVKYSAGGSAQNTLRIAQ-WL 76 (343)
T ss_pred ccceeeccC-ccceeeeeccCHHHHHHcCCCCCcceecchhhHHH-HHHHh-----hcccEEecCCchhHHHHHHHH-HH
Confidence 455578899 99999999999999999999999999988775444 43332 234899999999999999999 57
Q ss_pred CC---ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCCh----h
Q 026265 94 GV---PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA----E 166 (241)
Q Consensus 94 G~---~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~----~ 166 (241)
+- .+.|+|.||.|.+|+.+++.+++.||++++....+.+||+|.++++.++ |+++.+.++...++.++++. .
T Consensus 77 ~~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~ 155 (343)
T KOG2854|consen 77 LQQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWA 155 (343)
T ss_pred ccCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhh
Confidence 65 8999999999999999999999999999998888889999999998665 99999999999999998853 3
Q ss_pred hhCCccEEEEE-ecc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhh
Q 026265 167 DVKGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 167 ~i~~~~~v~~~-~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
.+++++++|+. +.+ +++++++.+.+.+.+...+.+++++.+++.+.+.+.+.++++ ++||+|+|++||+.+.
T Consensus 156 lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~--y~DiifgNe~EA~af~ 229 (343)
T KOG2854|consen 156 LVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLP--YADIIFGNEDEAAAFA 229 (343)
T ss_pred hhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcC--cceEEEcCHHHHHHHH
Confidence 78999999999 433 568999999999999999899999999988888888889998 9999999999999875
No 7
>PLN02548 adenosine kinase
Probab=99.96 E-value=2.8e-27 Score=203.34 Aligned_cols=210 Identities=25% Similarity=0.309 Sum_probs=164.6
Q ss_pred ecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHH---HhhcCCce
Q 026265 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL---SVGFGVPC 97 (241)
Q Consensus 21 iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l---a~~LG~~~ 97 (241)
+| |+++|+++.+++++|+++.+++|.+++..... .....+. +........+||++.|++..+ + ++|.++
T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~-----~~~~~~~~~~GG~~~Nva~~a~~l~-~lg~~~ 72 (332)
T PLN02548 1 MG-NPLLDISAVVDQDFLDKYDVKLNNAILAEEKH-LPMYDEL-----ASKYNVEYIAGGATQNSIRVAQWML-QIPGAT 72 (332)
T ss_pred CC-CceeEEEEecCHHHHHHcCCCCCceeechHHH-HHHHHHH-----hccCCceecCCcHHHHHHHHHHHHh-cCCCcE
Confidence 57 99999999999999999999999999643222 1111111 123478899999999986544 5 569999
Q ss_pred eEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCC----hhhhCCccE
Q 026265 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI----AEDVKGSKW 173 (241)
Q Consensus 98 ~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~----~~~i~~~~~ 173 (241)
.|+|.+|+|.+|+.+++.|++.||+++++...+.+|+.++++++ +|+|+++.+.++...++.+++. .+.++.+++
T Consensus 73 ~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 73 SYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCE
Confidence 99999999999999999999999999987654458999999886 7999998887766666655443 235788999
Q ss_pred EEEEec-c-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 174 LVLRFG-M-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 174 v~~~~~-~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+|++.. . .+.+.+..+++.++++|.++.+|+++.......++.+.++++ ++|++++|++|++.|+|
T Consensus 152 v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g 219 (332)
T PLN02548 152 YYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALP--YVDFLFGNETEARTFAK 219 (332)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHh--hCCEEEecHHHHHHHhC
Confidence 999932 1 356788888999999999999999755322233455778888 89999999999998864
No 8
>PRK11142 ribokinase; Provisional
Probab=99.96 E-value=1.7e-27 Score=202.21 Aligned_cols=189 Identities=23% Similarity=0.350 Sum_probs=156.1
Q ss_pred CeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC
Q 026265 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (241)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~ 95 (241)
.+|+++| .+++|+++.+ +++|.+ |.... .......+||++.|+|++|+ +||.
T Consensus 3 ~~i~~iG-~~~~D~~~~~-----~~~p~~-~~~~~--------------------~~~~~~~~GG~~~Nva~~la-~lG~ 54 (306)
T PRK11142 3 GKLVVLG-SINADHVLNL-----ESFPRP-GETLT--------------------GRHYQVAFGGKGANQAVAAA-RLGA 54 (306)
T ss_pred CcEEEEC-CceeeEEEEe-----CCCCCC-CCeeE--------------------eccceecCCCcHHHHHHHHH-hcCC
Confidence 3699999 9999999998 456543 22111 13678899999999999999 8999
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCcccCCh--hhhCCcc
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSK 172 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~--~~i~~~~ 172 (241)
++.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|+.++++++++|+|+++.++++...+++++++. +.+++++
T Consensus 55 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 134 (306)
T PRK11142 55 DIAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANAD 134 (306)
T ss_pred cEEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999887665 8999999998889999988888877788776652 5689999
Q ss_pred EEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++|++.. .+.+.+..+++.+++.|.+++||++... .+. ..+++ ++|++++|++|++.++|
T Consensus 135 ~v~~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~---~~~---~~~~~--~~dil~~n~~Ea~~l~g 194 (306)
T PRK11142 135 ALLMQLE-TPLETVLAAAKIAKQHGTKVILNPAPAR---ELP---DELLA--LVDIITPNETEAEKLTG 194 (306)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHHcCCEEEEECCCCc---ccC---HHHHh--hCCEEcCCHHHHHHHhC
Confidence 9999943 2567788899999999999999997431 122 34555 99999999999998875
No 9
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.96 E-value=1.9e-27 Score=200.57 Aligned_cols=188 Identities=30% Similarity=0.430 Sum_probs=154.7
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| .+++|++..+ +++|.+ +.... ......++||++.|+|++|+ +||.+
T Consensus 1 ~il~iG-~~~~D~~~~~-----~~~~~~-~~~~~--------------------~~~~~~~~GG~~~NvA~~l~-~lG~~ 52 (292)
T cd01174 1 KVVVVG-SINVDLVTRV-----DRLPKP-GETVL--------------------GSSFETGPGGKGANQAVAAA-RLGAR 52 (292)
T ss_pred CEEEEe-eceeEEEEEe-----cCCCCC-CCcEE--------------------eccceecCCCcHHHHHHHHH-HcCCc
Confidence 489999 9999999998 455533 21111 13577899999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCcccCCh--hhhCCccE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSKW 173 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~--~~i~~~~~ 173 (241)
+.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|+.++++++++|+|+++.+.++...+++++++. +.++++++
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T cd01174 53 VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADV 132 (292)
T ss_pred eEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCE
Confidence 99999999999999999999999999999866544 8999999998889999998888776777665543 46889999
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+|++.. .+.+.+..+++.+++.|++++||+++.. +.+..+++ ++|++++|++|++.|+|
T Consensus 133 v~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~~~~--~~dil~~n~~E~~~l~~ 191 (292)
T cd01174 133 LLLQLE-IPLETVLAALRAARRAGVTVILNPAPAR------PLPAELLA--LVDILVPNETEAALLTG 191 (292)
T ss_pred EEEeCC-CCHHHHHHHHHHHHhcCCEEEEeCCCcC------cCcHHHHh--hCCEEeeCHHHHHHHhC
Confidence 999854 3667888999999999999999997542 12345566 99999999999999875
No 10
>PLN02967 kinase
Probab=99.95 E-value=3.4e-27 Score=211.97 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=141.8
Q ss_pred CCceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeee-
Q 026265 72 SPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR- 149 (241)
Q Consensus 72 ~~~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~- 149 (241)
..+...+||+++|+|++|+ |||.++.|+|.||+|.+|+++++.|++.||+++++.+.++ +|+.++++++++|+|.++
T Consensus 236 ~~~~~~~GGa~aNVAvaLA-RLG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~ 314 (581)
T PLN02967 236 EKFVRAPGGSAGGVAIALA-SLGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTC 314 (581)
T ss_pred cceeeecCcHHHHHHHHHH-HCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEE
Confidence 4788899999999999999 8999999999999999999999999999999999988765 899999999988998775
Q ss_pred eCccccCCCCcccCChhhhCCccEEEEE-eccc---cHHHHHHHHHHHHHCCCeEEEeCCchHHH----hhchhhHHhhh
Q 026265 150 PCLSNAVKIQADELIAEDVKGSKWLVLR-FGMF---NFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLL 221 (241)
Q Consensus 150 ~~~g~~~~l~~~~~~~~~i~~~~~v~~~-~~~~---~~~~~~~~~~~a~~~g~~i~~D~~~~~~~----~~~~~~l~~~l 221 (241)
.++++...++.++++.+.+++++++|++ +.+. ....+..+++.+++.|++|+||++.+... ...++.+.+++
T Consensus 315 ~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL 394 (581)
T PLN02967 315 VKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAW 394 (581)
T ss_pred ecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHH
Confidence 3578888888888887788999999999 3322 24678899999999999999999754211 11234466788
Q ss_pred cCCCccEEecCHHHHHhhhC
Q 026265 222 ESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 222 ~~~~~d~l~~N~~Ea~~l~g 241 (241)
+ ++||+++|++|++.|+|
T Consensus 395 ~--~aDILk~NeeEl~~LtG 412 (581)
T PLN02967 395 N--LADIIEVTKQELEFLCG 412 (581)
T ss_pred H--hCCEEEECHHHHHHHhC
Confidence 8 99999999999999875
No 11
>PTZ00292 ribokinase; Provisional
Probab=99.95 E-value=5.1e-27 Score=201.21 Aligned_cols=196 Identities=21% Similarity=0.270 Sum_probs=158.7
Q ss_pred CCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
..++|+++| .+++|+++.+ +++|.+ |.... .......+||++.|+|++|+ +|
T Consensus 14 ~~~~vlviG-~~~vD~~~~~-----~~~~~~-~~~~~--------------------~~~~~~~~GG~~~NvA~~la-~l 65 (326)
T PTZ00292 14 AEPDVVVVG-SSNTDLIGYV-----DRMPQV-GETLH--------------------GTSFHKGFGGKGANQAVMAS-KL 65 (326)
T ss_pred CCCCEEEEc-cceeeEEEec-----CCCCCC-CCcee--------------------ecCceeCCCCcHHHHHHHHH-Hc
Confidence 356799999 9999999998 456543 22111 13568899999999999999 89
Q ss_pred CCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEc-CCCCeeeeeCccccCCCCcccCCh--hhhC
Q 026265 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIA--EDVK 169 (241)
Q Consensus 94 G~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~-~~g~r~~~~~~g~~~~l~~~~~~~--~~i~ 169 (241)
|.++.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|++++++++ ++|+|+++.++++...+++++++. +.+.
T Consensus 66 G~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~ 145 (326)
T PTZ00292 66 GAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQ 145 (326)
T ss_pred CCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999976654 8999999998 789999988888877788776653 3467
Q ss_pred C-ccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 G-SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~-~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+ +++++++.. .+.+.+.++++.+++.|+++++|+++.... ...+.+.++++ ++|++++|++|++.|+|
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~~~~~~~l~--~~dii~~n~~E~~~l~g 214 (326)
T PTZ00292 146 NICKYLICQNE-IPLETTLDALKEAKERGCYTVFNPAPAPKL-AEVEIIKPFLK--YVSLFCVNEVEAALITG 214 (326)
T ss_pred hhCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEECCCCccc-cccccHHHHHh--cCCEEcCCHHHHHHHhC
Confidence 7 999998743 356778889999999999999999854210 01145667777 99999999999998865
No 12
>PLN02323 probable fructokinase
Probab=99.95 E-value=9e-27 Score=200.01 Aligned_cols=198 Identities=22% Similarity=0.334 Sum_probs=157.9
Q ss_pred cccCCCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHH
Q 026265 10 REASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL 89 (241)
Q Consensus 10 ~~~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l 89 (241)
|.-.++.+|+++| +.++|++..++ .+|.. ........+||+++|+|+++
T Consensus 5 ~~~~~~~~i~~iG-~~~vD~~~~~~-----~~~~~-------------------------~~~~~~~~~GG~~~NvA~~l 53 (330)
T PLN02323 5 PSTAESSLVVCFG-EMLIDFVPTVS-----GVSLA-------------------------EAPAFKKAPGGAPANVAVGI 53 (330)
T ss_pred CccCCCCcEEEec-hhhhhhccCCC-----CCCcc-------------------------cccceeecCCChHHHHHHHH
Confidence 3434567799999 99999998773 33321 01256789999999999999
Q ss_pred HhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCc--cccCCCCcccCChh
Q 026265 90 SVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAE 166 (241)
Q Consensus 90 a~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~--g~~~~l~~~~~~~~ 166 (241)
+ |||.++.++|.+|+|.+|+++++.|++.||+++++.+.++ +|+.++++++++|+|+++++. ++...+++++++.+
T Consensus 54 a-~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~ 132 (330)
T PLN02323 54 S-RLGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLD 132 (330)
T ss_pred H-hcCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChH
Confidence 9 8999999999999999999999999999999999887765 899999999888999988764 55556788888777
Q ss_pred hhCCccEEEEEe-ccc-c--HHHHHHHHHHHHHCCCeEEEeCCchHHH----hhchhhHHhhhcCCCccEEecCHHHHHh
Q 026265 167 DVKGSKWLVLRF-GMF-N--FEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAE 238 (241)
Q Consensus 167 ~i~~~~~v~~~~-~~~-~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~----~~~~~~l~~~l~~~~~d~l~~N~~Ea~~ 238 (241)
.+++++++|++. .+. . ...+..+++.+++.|.+++||++..... ...++.+.++++ ++|++++|++|++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~ 210 (330)
T PLN02323 133 LIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWD--EADIIKVSDEEVEF 210 (330)
T ss_pred HHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHH--hCCEEEcCHHHHHH
Confidence 789999999883 211 1 2456788899999999999999743210 123445666777 99999999999998
Q ss_pred hhC
Q 026265 239 LVR 241 (241)
Q Consensus 239 l~g 241 (241)
++|
T Consensus 211 l~g 213 (330)
T PLN02323 211 LTG 213 (330)
T ss_pred HhC
Confidence 875
No 13
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.95 E-value=4.8e-27 Score=208.92 Aligned_cols=206 Identities=17% Similarity=0.181 Sum_probs=156.1
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcC
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG 94 (241)
+++|+|+| .+++|++...... +..+ ...++++++.-.+ ++..+...+||+++|+|++++ |||
T Consensus 125 ~~~v~~~G-e~liDf~~~~~~~-~~~~--------------~~~~~~~~~~~~~-~~~~f~~~~GGa~aNVAvaLA-RLG 186 (496)
T PLN02543 125 PPLVCCFG-AVQKEFVPTVRVH-DNQM--------------HPDMYSQWKMLQW-DPPEFARAPGGPPSNVAISHV-RLG 186 (496)
T ss_pred CCeEEEeC-hhhhhhcCCCccc-cccc--------------ccccccccccccc-cCCeeEeccCcHHHHHHHHHH-HCC
Confidence 46799999 9999999875210 0100 0012222221111 234688999999999999999 999
Q ss_pred CceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEc--CCCCeeee--eCccccCCCCcccCChhhhC
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD--ASGNRTMR--PCLSNAVKIQADELIAEDVK 169 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~--~~g~r~~~--~~~g~~~~l~~~~~~~~~i~ 169 (241)
.++.|+|.||+|.+|+++++.|+++||+++++.+.++ +|+.+++.++ ++| |.++ ...++...+++++++.+.++
T Consensus 187 ~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~ 265 (496)
T PLN02543 187 GRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLK 265 (496)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhC
Confidence 9999999999999999999999999999999998866 8999999884 345 5554 23466667888888877899
Q ss_pred CccEEEEE-eccc-c--HHHHHHHHHHHHHCCCeEEEeCCchHHH----hhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLR-FGMF-N--FEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~-~~~~-~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~----~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+++++|++ +.+. + .+.+..+++.+++.|++|+||++.+... +..++.+.++++ ++|++++|++|++.|+|
T Consensus 266 ~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~--~aDIl~~SeeEa~~Ltg 343 (496)
T PLN02543 266 EARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWN--EADIIEVSRQELEFLLD 343 (496)
T ss_pred CCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHH--hCCEEEecHHHHHHHhC
Confidence 99999999 3322 2 3678889999999999999999854211 122334566777 99999999999999875
No 14
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.95 E-value=3.5e-26 Score=192.75 Aligned_cols=191 Identities=20% Similarity=0.273 Sum_probs=150.5
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| .+++|++..+ +++|.+.. .. ........+|| +.|+|++++ +||.+
T Consensus 1 ~i~~iG-~~~~D~i~~~-----~~~~~~~~-~~--------------------~~~~~~~~~GG-~~Nva~~l~-~lG~~ 51 (289)
T cd01944 1 KVLVIG-AAVVDIVLDV-----DKLPASGG-DI--------------------EAKSKSYVIGG-GFNVMVAAS-RLGIP 51 (289)
T ss_pred CeEEEc-ceeEEEEeec-----ccCCCCCC-cc--------------------ccceeeeccCc-HHHHHHHHH-HcCCC
Confidence 489999 9999999998 45653322 11 11357899999 999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~ 176 (241)
+.++|.+|+|.+|+++++.|++.||+++++.+.+.+|+.++++++++|+|+++.+.++...+++++++...+.+++++|+
T Consensus 52 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (289)
T cd01944 52 TVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYL 131 (289)
T ss_pred eEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccccCCCCCEEEE
Confidence 99999999999999999999999999998887655788888898888999998888877777776666545788999999
Q ss_pred E-eccc----cHHHHHHHHHHHHHCCCeEEEeCCchHHHhhc-hhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 177 R-FGMF----NFEVIQAAIRIAKQEGLSVSMDLASFEMVRNF-RTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 177 ~-~~~~----~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~-~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+ +.+. ..+.+.++++.++ .+.++++|+++.. ..+ .+.+.++++ ++|++++|++|++.|+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~--~~~~~~~~~~~l~--~~d~~~~n~~E~~~l~g 197 (289)
T cd01944 132 SGYTLASENASKVILLEWLEALP-AGTTLVFDPGPRI--SDIPDTILQALMA--KRPIWSCNREEAAIFAE 197 (289)
T ss_pred eCccccCcchhHHHHHHHHHhcc-CCCEEEEcCcccc--cccCHHHHHHHHh--cCCEEccCHHHHHHHhC
Confidence 9 3321 1345555655543 5789999998552 111 344667777 99999999999999875
No 15
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.94 E-value=5.3e-26 Score=193.61 Aligned_cols=195 Identities=30% Similarity=0.463 Sum_probs=162.1
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| ++++|++.... +++|.+ +.... .......+||+++|+|++++ |||.+
T Consensus 1 ~v~~iG-~~~vD~~~~~~----~~~~~~-~~~~~--------------------~~~~~~~~GG~~~N~A~~~a-~lG~~ 53 (311)
T COG0524 1 DVVVIG-EANVDLIAQVV----DRLPEP-GETVL--------------------GDFFKVAGGGKGANVAVALA-RLGAK 53 (311)
T ss_pred CEEEEC-chhhheehhhc----cCCCCC-ccccc--------------------ccceeecCCchHHHHHHHHH-HcCCc
Confidence 489999 99999999852 455432 21111 12467889999999999999 99999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCcc-ccCCCCcccCChhhhCCccEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS-NAVKIQADELIAEDVKGSKWL 174 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g-~~~~l~~~~~~~~~i~~~~~v 174 (241)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|+.++++++++|+|+|.++++ +...+++++++.+.+..++++
T Consensus 54 ~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (311)
T COG0524 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVL 133 (311)
T ss_pred eEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCee
Confidence 99999999999999999999999999999998877 8999999999889999999888 466688888876788899999
Q ss_pred EEE-ecc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 175 VLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 175 ~~~-~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
|++ +.+ .+++.+..+++.+++.|.++++|+++...... ++.++++++ ++|++++|++|++.|+|
T Consensus 134 ~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-~~~~~~~l~--~~d~~~~n~~E~~~l~g 199 (311)
T COG0524 134 HISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALWD-RELLEELLA--LADILFPNEEEAELLTG 199 (311)
T ss_pred eEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCccccc-hhhHHHHHh--hCCEEeCCHHHHHHHhC
Confidence 999 443 24488999999999999999999987742111 356777888 99999999999999875
No 16
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.94 E-value=7.3e-26 Score=189.71 Aligned_cols=185 Identities=24% Similarity=0.298 Sum_probs=149.8
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| ++++|+++.+ +++|.+.... ...+....+||++.|+|++++ |||.+
T Consensus 1 ~v~~iG-~~~~D~~~~v-----~~~p~~~~~~---------------------~~~~~~~~~GG~~~Nva~~l~-~lg~~ 52 (279)
T cd01942 1 DVAVVG-HLNYDIILKV-----ESFPGPFESV---------------------LVKDLRREFGGSAGNTAVALA-KLGLS 52 (279)
T ss_pred CEEEEe-cceeeeEeec-----ccCCCCCceE---------------------ecceeeecCCcHHHHHHHHHH-HcCCC
Confidence 689999 9999999998 5666431111 124788999999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecC-CCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~-~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~ 175 (241)
+.++|.+|+|.+|+++++.|++.||++.++...+ .+|+.++++++++|+|++..++++...+++++ ....+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-EADPDGLADIVH 131 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-chhhhcccCEEE
Confidence 9999999999999999999999999999996554 48999999998888898887788777777665 456789999999
Q ss_pred EEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHH
Q 026265 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~ 237 (241)
++.. + .+.++++.+++.|+++++|+++.... ...+.+.++++ ++|++++|++|+.
T Consensus 132 ~~~~--~--~~~~~~~~~~~~g~~v~~D~~~~~~~-~~~~~~~~~l~--~~dil~~n~~E~~ 186 (279)
T cd01942 132 LSSG--P--GLIELARELAAGGITVSFDPGQELPR-LSGEELEEILE--RADILFVNDYEAE 186 (279)
T ss_pred eCCc--h--HHHHHHHHHHHcCCeEEEcchhhhhh-ccHHHHHHHHh--hCCEEecCHHHHH
Confidence 9942 1 46677788888899999999864311 12244667777 9999999999994
No 17
>PRK09850 pseudouridine kinase; Provisional
Probab=99.94 E-value=9.3e-26 Score=192.38 Aligned_cols=190 Identities=23% Similarity=0.210 Sum_probs=148.2
Q ss_pred CCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
+.+.|+++| .+++|+++.+. .|++.++.. +......+||+++|+|++++ ||
T Consensus 3 ~~~~i~~iG-~~~vD~~~~~~------~~~~~~~~~---------------------~~~~~~~~GG~~~NvA~~l~-~l 53 (313)
T PRK09850 3 EKDYVVIIG-SANIDVAGYSH------ESLNYADSN---------------------PGKIKFTPGGVGRNIAQNLA-LL 53 (313)
T ss_pred CCCcEEEEC-cEEEeeeccCC------CcCcCCCCC---------------------ceEEEEeCCcHHHHHHHHHH-Hc
Confidence 456799999 99999999862 243333221 12567889999999999999 89
Q ss_pred CCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeC-ccccCCCCcccCC--hhhhC
Q 026265 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC-LSNAVKIQADELI--AEDVK 169 (241)
Q Consensus 94 G~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~-~g~~~~l~~~~~~--~~~i~ 169 (241)
|.++.++|.||+|.+|+++++.|++.||+++++.+.++ +|++++++++++|+|++.++ .++...++.+.+. .+.++
T Consensus 54 G~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
T PRK09850 54 GNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQ 133 (313)
T ss_pred CCCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999998876666 79999999998899988665 3444556555443 24578
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+++++|+++. .+.+.+..+++.+ .|+++++|+++... ...+.++++ ++|++++|++|++.|+|
T Consensus 134 ~~~~v~~~~~-~~~~~~~~~~~~~--~g~~v~~D~~~~~~----~~~~~~~l~--~~dil~~N~~Ea~~l~g 196 (313)
T PRK09850 134 RAKVIVADCN-ISEEALAWILDNA--ANVPVFVDPVSAWK----CVKVRDRLN--QIHTLKPNRLEAETLSG 196 (313)
T ss_pred cCCEEEEeCC-CCHHHHHHHHHhc--cCCCEEEEcCCHHH----HHHHHhhhc--cceEEccCHHHHHHHhC
Confidence 9999999854 3556666666543 58999999986421 123556676 89999999999998875
No 18
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.94 E-value=3.3e-25 Score=198.08 Aligned_cols=207 Identities=22% Similarity=0.245 Sum_probs=150.4
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcC
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG 94 (241)
..+|+++| ++++|+++.+ +++|.+ |. +....+...+...+ +......+|| ++|+|++++ +||
T Consensus 72 ~~~vl~lG-~~~vD~i~~V-----~~lP~~-~~------~~~~~~~~~~~~~~---~~~~~~~~GG-~~NvAvaLa-rLG 133 (470)
T PLN02341 72 EIDVATLG-NLCVDIVLPV-----PELPPP-SR------EERKAYMEELAASP---PDKKSWEAGG-NCNFAIAAA-RLG 133 (470)
T ss_pred cccEEEEC-CcceeEEEec-----CCCCCC-CH------HHHHHHHHhhcccc---cccceecCCh-HHHHHHHHH-HcC
Confidence 46899999 9999999999 567643 21 11112222111110 1234556677 799999999 899
Q ss_pred CceeEEeeecCChhHHHHHHHHHhCCceeeceeecC---------CCceeEEEEEcCCCCeeeeeCccccCCCCcc---c
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR---------GPTGQCVCLVDASGNRTMRPCLSNAVKIQAD---E 162 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~---------~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~---~ 162 (241)
.++.++|.||+|.+|+++++.|++.||++.++...+ .+|+.|+++++++|+|+++...+.......+ .
T Consensus 134 ~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~ 213 (470)
T PLN02341 134 LRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISK 213 (470)
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhc
Confidence 999999999999999999999999999999887654 2699999999988988765433322211111 1
Q ss_pred C---ChhhhCCccEEEEE-ecc--ccHHHHHHHHHHHHHCCCeEEEeCCchHH-----HhhchhhHHhhhcCCCccEEec
Q 026265 163 L---IAEDVKGSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLASFEM-----VRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 163 ~---~~~~i~~~~~v~~~-~~~--~~~~~~~~~~~~a~~~g~~i~~D~~~~~~-----~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
+ ..+.++++|++|++ +.. .+.+.+..+++.+++.|++++||+++... .+..++.+.++++ ++|++++
T Consensus 214 l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~--~~Dil~~ 291 (470)
T PLN02341 214 LSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLR--MSDVLLL 291 (470)
T ss_pred ccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHh--hCCEEEe
Confidence 1 12468899999999 432 35788899999999999999999975410 0012344677887 9999999
Q ss_pred CHHHHHhhhC
Q 026265 232 NEDEAAELVR 241 (241)
Q Consensus 232 N~~Ea~~l~g 241 (241)
|++|++.|+|
T Consensus 292 Ne~Ea~~l~g 301 (470)
T PLN02341 292 TSEEAEALTG 301 (470)
T ss_pred cHHHHHHHhC
Confidence 9999999875
No 19
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.94 E-value=1.3e-25 Score=189.41 Aligned_cols=190 Identities=26% Similarity=0.392 Sum_probs=151.2
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| +.++|++...+.. . +.+.+....+||++.|+|++++ +||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~~~~----~---------------------------~~~~~~~~~~GG~~~N~a~~la-~lg~~ 47 (294)
T cd01166 1 DVVTIG-EVMVDLSPPGGGR----L---------------------------EQADSFRKFFGGAEANVAVGLA-RLGHR 47 (294)
T ss_pred CeEEec-hhheeeecCCCCc----c---------------------------chhhccccccCChHHHHHHHHH-hcCCc
Confidence 589999 9999999776310 0 0113677889999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCcc--ccCCCCcccCChhhhCCccE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELIAEDVKGSKW 173 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g--~~~~l~~~~~~~~~i~~~~~ 173 (241)
+.++|.+|+|.+|+++++.|++.||++.++.+.++ +|+.+++.++++|+|+++.+.+ +...++.++++...++++++
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADH 127 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCE
Confidence 99999999999999999999999999999876655 8999999998778998877643 44567777776667899999
Q ss_pred EEEEecc---cc--HHHHHHHHHHHHHCCCeEEEeCCchHH---HhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 174 LVLRFGM---FN--FEVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 174 v~~~~~~---~~--~~~~~~~~~~a~~~g~~i~~D~~~~~~---~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+|++... .+ .+.+.++++.+++.+.++++|++.... .....+.+.++++ ++|++++|+.|++.|+|
T Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~--~~dil~~n~~E~~~l~~ 201 (294)
T cd01166 128 LHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLP--YVDIVLPSEEEAEALLG 201 (294)
T ss_pred EEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHH--hCCEEEcCHHHHHHHhC
Confidence 9999322 12 267888899999999999999975321 0112344566777 99999999999998865
No 20
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.94 E-value=4.5e-25 Score=186.14 Aligned_cols=185 Identities=19% Similarity=0.282 Sum_probs=147.3
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
.|+++| .+++|+++.+ +++|.+.. ... .......+||+++|+|++++ +||.+
T Consensus 1 ~v~~iG-~~~vD~~~~v-----~~~p~~~~-~~~--------------------~~~~~~~~GG~a~NvA~~la-~lG~~ 52 (290)
T cd01939 1 AVLCVG-LTVLDFITTV-----DKYPFEDS-DQR--------------------TTNGRWQRGGNASNSCTVLR-LLGLS 52 (290)
T ss_pred CEEEEe-eeeeEEEeee-----cCCCCCCc-ceE--------------------eeeeeEecCCCHHHHHHHHH-HcCCc
Confidence 489999 9999999999 56664322 111 12457889999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~ 175 (241)
+.++|.+|+|++|+++++.|++.||++.++.+.++ .++.++++++++|+|+++.+.++...++.++++...+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
T cd01939 53 CEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIH 132 (290)
T ss_pred eEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhhhccCCEEE
Confidence 99999999999999999999999999999866554 56667888877889988887777777887777655568999999
Q ss_pred EEeccccHHHHHHHHHHHHHCC-------CeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhh
Q 026265 176 LRFGMFNFEVIQAAIRIAKQEG-------LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~g-------~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l 239 (241)
++.. .+....++++.+++.+ +++++|+... .+.++++++ ++|++++|++|++.+
T Consensus 133 ~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~------~~~~~~~l~--~~di~~~n~~~~~~~ 193 (290)
T cd01939 133 FEGR--NPDETLRMMQHIEEHNNRRPEIRITISVEVEKP------REELLELAA--YCDVVFVSKDWAQSR 193 (290)
T ss_pred Eecc--CHHHHHHHHHHHHHhcCcCCCcceEEEEEeccC------chhhhhHHh--hCCEEEEEhHHHHhc
Confidence 9953 2345667777777766 6888998632 344667887 999999999987754
No 21
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.93 E-value=1.3e-24 Score=182.69 Aligned_cols=187 Identities=23% Similarity=0.324 Sum_probs=150.2
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| .+++|++..+ +++|.+.... . .......+||++.|+|.+|+ +||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~-----~~~p~~~~~~-~--------------------~~~~~~~~GG~~~NvA~~l~-~lG~~ 52 (284)
T cd01945 1 RVLGVG-LAVLDLIYLV-----ASFPGGDGKI-V--------------------ATDYAVIGGGNAANAAVAVA-RLGGQ 52 (284)
T ss_pred CEEEEC-cceeEEEEEe-----ccCCCCCCeE-E--------------------EeEEEEecCCHHHHHHHHHH-HcCCC
Confidence 589999 9999999998 4565432111 0 13678999999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~ 175 (241)
+.++|.+|+|.+|+.+++.|++.||++.++.+.++ +|+.+++ ...+|+|++..+.+....++.++++...+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (284)
T cd01945 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDAILGGADAVL 131 (284)
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHHHhCcCCEEE
Confidence 99999999999999999999999999999988765 7888776 444677877767666667777778777789999999
Q ss_pred EEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++.. .++...++++.+++.|.++++|+.+.. ..+ +.++++ ++|++++|++|++.++|
T Consensus 132 i~~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~----~~~-~~~~~~--~~dil~~n~~e~~~l~~ 188 (284)
T cd01945 132 VDGR--QPEAALHLAQEARARGIPIPLDLDGGG----LRV-LEELLP--LADHAICSENFLRPNTG 188 (284)
T ss_pred EcCC--CHHHHHHHHHHHHHcCCCeeEeccCCc----ccc-hHHHhc--cCCEEEeChhHHhhhcC
Confidence 9942 346778899999999997777765432 222 566777 99999999999998764
No 22
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.93 E-value=3.3e-24 Score=181.03 Aligned_cols=183 Identities=24% Similarity=0.385 Sum_probs=149.8
Q ss_pred CeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCceeEEeee
Q 026265 24 AALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (241)
Q Consensus 24 ~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~~~~vg~v 103 (241)
++++|++..+ +++|.+ |.... .......+||++.|+|++++ +||.++.+++.+
T Consensus 2 ~~~~D~~~~~-----~~~p~~-~~~~~--------------------~~~~~~~~GG~~~Nva~~l~-~lg~~~~~~~~v 54 (293)
T TIGR02152 2 SINMDLVLRT-----DRLPKP-GETVH--------------------GHSFQIGPGGKGANQAVAAA-RLGAEVSMIGKV 54 (293)
T ss_pred CceEeEEEEe-----CCCCCC-CCcEe--------------------cCCceecCCCcHHHHHHHHH-HCCCCEEEEEEe
Confidence 8999999999 456543 22211 23678999999999999999 899999999999
Q ss_pred cCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCcccCC--hhhhCCccEEEEEecc
Q 026265 104 GDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKWLVLRFGM 180 (241)
Q Consensus 104 G~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~--~~~i~~~~~v~~~~~~ 180 (241)
|+|.+|+++++.|++.||++.++.+.++ +|++++++++++|+|+++.+.++...+++++++ .+.+..+++++++..
T Consensus 55 G~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 133 (293)
T TIGR02152 55 GDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLE- 133 (293)
T ss_pred cCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEecC-
Confidence 9999999999999999999999987655 899999999888999988888876677777665 346789999999854
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 181 FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+.+.+..+++.+++.++++++|++... ... ..++++ ++|++++|++|++.|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~D~~~~~--~~~---~~~~~~--~~d~l~~n~~E~~~l~~ 187 (293)
T TIGR02152 134 IPLETVLEAAKIAKKHGVKVILNPAPAI--KDL---DDELLS--LVDIITPNETEAEILTG 187 (293)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCcCc--ccc---hHHHHh--cCCEEccCHHHHHHHhC
Confidence 3667888999999999999999997541 011 245566 99999999999998864
No 23
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.93 E-value=3e-24 Score=181.27 Aligned_cols=187 Identities=22% Similarity=0.321 Sum_probs=147.5
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| ++++|++...+. .+ ......+||+++|+|.+++ +||.+
T Consensus 1 ~ilviG-~~~~D~~~~~~~-----~~-----------------------------~~~~~~~GG~~~n~a~~l~-~lg~~ 44 (295)
T cd01167 1 KVVCFG-EALIDFIPEGSG-----AP-----------------------------ETFTKAPGGAPANVAVALA-RLGGK 44 (295)
T ss_pred CEEEEc-ceeEEEecCCCC-----CC-----------------------------ccccccCCCcHHHHHHHHH-hcCCC
Confidence 589999 999999977631 11 2567899999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecC-CCceeEEEEEcCCCCeeeeeCccccCCCCccc-CChhhhCCccEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADE-LIAEDVKGSKWL 174 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~-~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~-~~~~~i~~~~~v 174 (241)
+.++|.+|+|.+|+++++.|++.||++.++.+.+ .+|+.++++++++|+|++.++.++......+. +..+.+++++++
T Consensus 45 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 124 (295)
T cd01167 45 AAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADIL 124 (295)
T ss_pred eEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEE
Confidence 9999999999999999999999999999888554 48999999998889999988766543322222 445678899999
Q ss_pred EEEec-cc-c--HHHHHHHHHHHHHCCCeEEEeCCchHHH----hhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 175 VLRFG-MF-N--FEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 175 ~~~~~-~~-~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~----~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
|++.. .. + .+.+.++++.+++.|.++++|++..... ...++.+.++++ ++|++++|++|+..|+|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~d~l~~n~~E~~~l~~ 197 (295)
T cd01167 125 HFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLE--LADIVKLSDEELELLFG 197 (295)
T ss_pred EEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHH--hCCEEEecHHHHHHHhC
Confidence 99832 21 1 3567888999999999999999743210 012334667777 99999999999998865
No 24
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.92 E-value=2.7e-24 Score=181.01 Aligned_cols=189 Identities=24% Similarity=0.335 Sum_probs=145.8
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
.|+++| .+++|++..++ +.|.+ +... .......+||+++|+|++++ +||.+
T Consensus 1 ~v~~~G-~~~~D~~~~~~-----~~~~~-~~~~---------------------~~~~~~~~GG~~~Nva~~l~-~lG~~ 51 (288)
T cd01941 1 EIVVIG-AANIDLRGKVS-----GSLVP-GTSN---------------------PGHVKQSPGGVGRNIAENLA-RLGVS 51 (288)
T ss_pred CeEEEE-eEEEeeeeccc-----Ccccc-CCCC---------------------CeeEEEccCcHHHHHHHHHH-HhCCC
Confidence 389999 99999999984 44432 2111 12467899999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee-CccccCCCCcccCC--hhhhCCccE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP-CLSNAVKIQADELI--AEDVKGSKW 173 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~-~~g~~~~l~~~~~~--~~~i~~~~~ 173 (241)
+.++|.+|+|.+|+.+++.|++.||++.++...+.+|+.++++++.+|+|++.. .++....++++.++ .+.+.++++
T Consensus 52 ~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (288)
T cd01941 52 VALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKP 131 (288)
T ss_pred cEEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCE
Confidence 999999999999999999999999999988754458999999998889998732 34443444443322 345889999
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++++.. .+++.+..+++.+++.+.++++|++... .++ .+.++++ ++|++++|++|++.++|
T Consensus 132 v~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~~~~---~~~-~~~~~~~--~~dii~~n~~E~~~~~~ 192 (288)
T cd01941 132 IVVDAN-LPEEALEYLLALAAKHGVPVAFEPTSAP---KLK-KLFYLLH--AIDLLTPNRAELEALAG 192 (288)
T ss_pred EEEeCC-CCHHHHHHHHHhhhhcCCcEEEEccchH---Hhc-cchhhcc--cceEEeCCHHHHHHHhC
Confidence 999854 3667788889999999999999986432 111 1224666 99999999999998764
No 25
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.92 E-value=1.2e-23 Score=175.15 Aligned_cols=180 Identities=21% Similarity=0.232 Sum_probs=140.2
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| ++++|++..+ +++|.+ |.... ..+....+||++.|+|++++ +||.+
T Consensus 1 ~il~iG-~~~iD~~~~~-----~~~~~~-~~~~~--------------------~~~~~~~~GG~~~Nva~~l~-~lG~~ 52 (265)
T cd01947 1 KIAVVG-HVEWDIFLSL-----DAPPQP-GGISH--------------------SSDSRESPGGGGANVAVQLA-KLGND 52 (265)
T ss_pred CEEEEe-eeeEEEEEEe-----cCCCCC-Cceee--------------------cccceeecCchHHHHHHHHH-HcCCc
Confidence 589999 9999999998 445533 22111 13688999999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~ 176 (241)
+.++|.+|+|.+|+.+++.|++ +++..++...+..|+.++++++++|+|+++.+.+.. .+++..+.++++|++|+
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~~~~~~~~~~~~~ 127 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLKWPILDEGDGVFI 127 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCCHhHhccCCEEEE
Confidence 9999999999999999999999 998887776656899999999888999987654432 23445557889999999
Q ss_pred EeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhh
Q 026265 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
+... ...++++.+++.+ .+++|++... ....+.++++ ++|++++|++|+..++
T Consensus 128 ~~~~----~~~~~~~~a~~~~-~~~~d~~~~~----~~~~~~~~~~--~~d~~~~n~~e~~~l~ 180 (265)
T cd01947 128 TAAA----VDKEAIRKCRETK-LVILQVTPRV----RVDELNQALI--PLDILIGSRLDPGELV 180 (265)
T ss_pred eccc----ccHHHHHHHHHhC-CeEeccCccc----cchhHHHHhh--hCCEEEeCHHHHHHhh
Confidence 9432 1245667777765 5778887542 1234566777 9999999999998775
No 26
>PRK09954 putative kinase; Provisional
Probab=99.92 E-value=1.1e-23 Score=182.96 Aligned_cols=188 Identities=19% Similarity=0.196 Sum_probs=142.4
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcC
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG 94 (241)
...|+++| ++++|+++.++ .++|.+ ++. +......+||++.|+|++++ |||
T Consensus 57 ~~~v~viG-~~~vD~~~~~~----~~~p~~--~~~---------------------~~~~~~~~GG~~~NvA~~la-rLG 107 (362)
T PRK09954 57 QEYCVVVG-AINMDIRGMAD----IRYPQA--ASH---------------------PGTIHCSAGGVGRNIAHNLA-LLG 107 (362)
T ss_pred CccEEEEE-EEEEEEEEeeC----CcCcCC--CCC---------------------CceEEEecCcHHHHHHHHHH-HcC
Confidence 34799999 99999999883 145422 110 13577889999999999999 899
Q ss_pred CceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCcc--ccCCCCcccCC--hhhhC
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELI--AEDVK 169 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g--~~~~l~~~~~~--~~~i~ 169 (241)
.++.++|.||+|.+|+++++.|++.||+++++.+.++ +|+.+++++++++ ++++.+.+ +...++++.+. .+.+.
T Consensus 108 ~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (362)
T PRK09954 108 RDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQD-ETVLAINDTHILQQLTPQLLNGSRDLIR 186 (362)
T ss_pred CCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCC-CEEEEEcCchhhhcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998887766 7999888887555 44444333 33456655444 24478
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+++++++.. .+.+.+..+++.+ .++++++|+++.. ..+.+.++++ ++|++++|++|++.|+|
T Consensus 187 ~~~~v~~~~~-~~~~~~~~~~~~a--~~~~v~~D~~~~~----~~~~~~~~l~--~~dil~~n~~Ea~~l~g 249 (362)
T PRK09954 187 HAGVVLADCN-LTAEALEWVFTLA--DEIPVFVDTVSEF----KAGKIKHWLA--HIHTLKPTQPELEILWG 249 (362)
T ss_pred cCCEEEEECC-CCHHHHHHHHHhC--CCCcEEEECCCHH----Hhhhhhhhhc--cccEEecCHHHHHHHcC
Confidence 8999999864 3566666666554 4799999997642 1123556677 99999999999998875
No 27
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.91 E-value=4.9e-24 Score=180.28 Aligned_cols=190 Identities=29% Similarity=0.410 Sum_probs=154.3
Q ss_pred CeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC
Q 026265 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (241)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~ 95 (241)
.+|+++| .+++|++..++. + .+.... ......++||++.|+|++|+ +||.
T Consensus 2 ~~v~~iG-~~~iD~~~~~~~-----~---~~~~~~--------------------~~~~~~~~GG~~~n~a~~l~-~LG~ 51 (301)
T PF00294_consen 2 KKVLVIG-EVNIDIIGYVDR-----F---KGDLVR--------------------VSSVKRSPGGAGANVAIALA-RLGA 51 (301)
T ss_dssp EEEEEES-EEEEEEEEESSS-----H---TTSEEE--------------------ESEEEEEEESHHHHHHHHHH-HTTS
T ss_pred CcEEEEC-ccceEEEeecCC-----c---CCccee--------------------cceEEEecCcHHHHHHHHHH-hccC
Confidence 4799999 999999999953 1 111111 13788999999999999999 8999
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEE
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v 174 (241)
++.+++.+|+|.+|+.+++.|++.||+++++.+.++ +|+.++++++++|+|+++.+.++...++.+++....+.+++++
T Consensus 52 ~v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (301)
T PF00294_consen 52 DVALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELDEEAIDEADIL 131 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHHHHHHHTESEE
T ss_pred cceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccccccccccccce
Confidence 999999999999999999999999999999997765 8999999999889999998888777777766666788999999
Q ss_pred EEEe-cc---ccHHHHHHHHHHHHHCC--CeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 175 VLRF-GM---FNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 175 ~~~~-~~---~~~~~~~~~~~~a~~~g--~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
|++. .+ .+...+..+.+.+++.+ .+++.++.+. .+++.+.++++ ++|++++|++|++.|+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~--~~dil~~n~~E~~~l~~ 198 (301)
T PF00294_consen 132 HLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWD----DLREDLKELLP--YADILKPNEEEAEALTG 198 (301)
T ss_dssp EEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSH----HHHHHHHHHHH--TSSEEEEEHHHHHHHHT
T ss_pred eecccccccccccceeeeccccccccccccccccccccc----ccchhhhhhcc--ccchhcccccccccccc
Confidence 9996 32 23566677777777777 3455555443 14567778787 99999999999999875
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.91 E-value=2.7e-23 Score=176.26 Aligned_cols=180 Identities=24% Similarity=0.280 Sum_probs=141.1
Q ss_pred ecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCceeEE
Q 026265 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLI 100 (241)
Q Consensus 21 iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~~~~v 100 (241)
+++++.+|+++.+ +++| .|.... ..+...++||+++|+|++++ +||.++.++
T Consensus 4 ~~~~~~~D~~~~~-----~~~~--~g~~~~--------------------~~~~~~~~GG~~~NvA~~la-~lG~~v~~i 55 (304)
T TIGR03828 4 VTLNPAIDLTIEL-----DGLT--LGEVNR--------------------VESTRIDAGGKGINVSRVLK-NLGVDVVAL 55 (304)
T ss_pred EEcchHHeEEEEc-----cccc--cCceee--------------------cccccccCCccHHHHHHHHH-HcCCCeEEE
Confidence 4458999999999 4565 343222 13678999999999999999 899999999
Q ss_pred eeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCCh------hhhCCccEE
Q 026265 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKWL 174 (241)
Q Consensus 101 g~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~------~~i~~~~~v 174 (241)
|.+|+| +|+.+++.|++.||+++++... ..|++++++++++|+|+++.+.++ .++.++++. +.+++++++
T Consensus 56 s~vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v 131 (304)
T TIGR03828 56 GFLGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWL 131 (304)
T ss_pred EEecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEE
Confidence 999999 6999999999999999988876 468888888888888887766654 355444331 257899999
Q ss_pred EEE-ecc--ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 175 VLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 175 ~~~-~~~--~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
|++ +.. .+.+.+..+++.+++.+.+++||++.. .+++.+.+ ..|++++|+.|++.|+|
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~--------~~~~~~~~-~~~i~~~n~~E~~~l~g 192 (304)
T TIGR03828 132 VLSGSLPPGVPPDFYAELIALAREKGAKVILDTSGE--------ALRDGLKA-KPFLIKPNDEELEELFG 192 (304)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChH--------HHHHHHhc-CCcEECcCHHHHHHHhC
Confidence 999 321 356788899999999999999999754 13333331 67999999999999875
No 29
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.91 E-value=6.9e-24 Score=181.89 Aligned_cols=182 Identities=20% Similarity=0.172 Sum_probs=148.2
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc-CC
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF-GV 95 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L-G~ 95 (241)
+++++| .+++|++...+. ..+...+||+++|+|++++ +| |.
T Consensus 1 ~~~~~G-~~~~d~i~~~~~------------------------------------~~~~~~~GG~~~N~A~~~~-~l~g~ 42 (328)
T cd01943 1 DFTTLG-MFIIDEIEYPDS------------------------------------EPVTNVLGGAGTYAILGAR-LFLPP 42 (328)
T ss_pred CccccC-cEEeeccccCCC------------------------------------CccccccCCchhhHhhcee-eecCC
Confidence 578999 999999988731 1466889999999999998 89 54
Q ss_pred --ce--eEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCC
Q 026265 96 --PC--GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (241)
Q Consensus 96 --~~--~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~ 170 (241)
++ .+++.+|+| +|+++++.|++.||++.+ .+.++ +|+.++++++++|+|.++.+.++...+++++++...+..
T Consensus 43 ~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 120 (328)
T cd01943 43 PLSRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNSTPLIR 120 (328)
T ss_pred ccccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccccccC
Confidence 77 889999999 999999999999999988 55444 899999998888899888887877788888887777889
Q ss_pred ccEEEEEeccccH--HHHHHHHHHHHH------CCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 171 SKWLVLRFGMFNF--EVIQAAIRIAKQ------EGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 171 ~~~v~~~~~~~~~--~~~~~~~~~a~~------~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++++|++... +. +...++++.+++ .+.++++|+++........+.+.++++ ++|++++|++|++.|+|
T Consensus 121 a~~~hl~~~~-~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~--~~dil~~n~~Ea~~l~g 196 (328)
T cd01943 121 SSCIHLICSP-ERCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALP--RVDVFSPNLEEAARLLG 196 (328)
T ss_pred CCeEEEECCH-HHHHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhc--cCCEECCCHHHHHHHhC
Confidence 9999998432 22 677888888888 899999999754110012345778888 99999999999999875
No 30
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.91 E-value=6.6e-23 Score=174.06 Aligned_cols=183 Identities=26% Similarity=0.328 Sum_probs=143.1
Q ss_pred CeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC
Q 026265 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (241)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~ 95 (241)
.+|+++| +.++|++... + ......+||++.|+|++++ +||.
T Consensus 3 ~~il~iG-~~~iD~~~~~------------~-------------------------~~~~~~~GG~~~N~a~~l~-~LG~ 43 (304)
T PRK09434 3 NKVWVLG-DAVVDLIPEG------------E-------------------------NRYLKCPGGAPANVAVGIA-RLGG 43 (304)
T ss_pred CcEEEec-chheeeecCC------------C-------------------------CceeeCCCChHHHHHHHHH-HcCC
Confidence 4799999 9999997211 0 1345789999999999999 8999
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeC--ccccCCCCcccCChhhhCCcc
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC--LSNAVKIQADELIAEDVKGSK 172 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~--~g~~~~l~~~~~~~~~i~~~~ 172 (241)
++.++|.+|+|.+|+++++.|++.||++.++...++ +|+.+++.++++|+|++.+. +++...++.++++ .+++.+
T Consensus 44 ~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~ 121 (304)
T PRK09434 44 ESGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGE 121 (304)
T ss_pred CceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCC
Confidence 999999999999999999999999999998887655 89999999987799986543 3444445555553 367899
Q ss_pred EEEEE-eccc-c--HHHHHHHHHHHHHCCCeEEEeCCchHHH----hhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 173 WLVLR-FGMF-N--FEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 173 ~v~~~-~~~~-~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~----~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++|++ +.+. + .....++++.+++.|.+++||++..... ..+++.+.++++ ++|++++|++|++.|+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~e~~~l~g 196 (304)
T PRK09434 122 WLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALA--LADVVKLSEEELCFLSG 196 (304)
T ss_pred EEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHH--hcceeeCCHHHHHHHhC
Confidence 99998 3221 2 3456788999999999999999754211 133455666777 99999999999998864
No 31
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.90 E-value=9.5e-23 Score=169.63 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=121.8
Q ss_pred eeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCc-c
Q 026265 75 KTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-S 153 (241)
Q Consensus 75 ~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~-g 153 (241)
..++||+++|+|.+++ +||.++.++|.+|+|.+|+++++.|++.||+++++.+.+++|+.+++.. ++|+|+++.+. +
T Consensus 18 ~~~~GG~~~Nva~~la-~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~-~~g~r~~~~~~~~ 95 (264)
T cd01940 18 KMYPGGNALNVAVYAK-RLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVEL-VDGDRIFGLSNKG 95 (264)
T ss_pred eecCCCcHHHHHHHHH-HcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEe-cCCceEEEeecCC
Confidence 4689999999999999 8999999999999999999999999999999999987667899888654 67899887653 4
Q ss_pred ccCCCCcccCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCH
Q 026265 154 NAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANE 233 (241)
Q Consensus 154 ~~~~l~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~ 233 (241)
+.....+.+.....+++++++|++.. .+.+.+.++++.+++.|+++++|++... ..+.+.++++ ++|++++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~~--~~d~~~~~~ 168 (264)
T cd01940 96 GVAREHPFEADLEYLSQFDLVHTGIY-SHEGHLEKALQALVGAGALISFDFSDRW----DDDYLQLVCP--YVDFAFFSA 168 (264)
T ss_pred cHHhcccCcccHhHHhcCCEEEEccc-ccHHHHHHHHHHHHHcCCEEEEcCcccC----CHHHHHhhcc--cCCEEEech
Confidence 43333332333456789999999932 2356788899999999999999998652 1223556677 999999997
Q ss_pred HHH
Q 026265 234 DEA 236 (241)
Q Consensus 234 ~Ea 236 (241)
+|.
T Consensus 169 ~~~ 171 (264)
T cd01940 169 SDL 171 (264)
T ss_pred hhc
Confidence 765
No 32
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.90 E-value=1.4e-22 Score=171.80 Aligned_cols=188 Identities=23% Similarity=0.327 Sum_probs=139.3
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| +.++|+++.++. +++|.+..... +........+|| ++|+|.+++ |||.+
T Consensus 1 ~vl~iG-~~~~D~~~~~~~---~~~~~~~~~~~-------------------~~~~~~~~~~GG-~~NvA~~la-~LG~~ 55 (304)
T cd01172 1 KVLVVG-DVILDEYLYGDV---ERISPEAPVPV-------------------VKVEREEIRLGG-AANVANNLA-SLGAK 55 (304)
T ss_pred CEEEEc-ceeEEeeEeecc---ccccCCCCcce-------------------EEeeeEEecCcH-HHHHHHHHH-HhCCC
Confidence 589999 999999998642 24432211100 001256678999 689999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccC------ChhhhCC
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADEL------IAEDVKG 170 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~------~~~~i~~ 170 (241)
+.++|.+|+|.+|+++++.|++.||++.++.....+|+.+++++++ +++.+..+.+....++.... ....+++
T Consensus 56 ~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (304)
T cd01172 56 VTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPE 134 (304)
T ss_pred eEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999998854433479998888874 56666555443344443211 1245789
Q ss_pred ccEEEEE-ec--cccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 171 SKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 171 ~~~v~~~-~~--~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+|++|++ +. ..+++.+..+++.+++.|++++||++... +..++ ++|++++|++|++.++|
T Consensus 135 ~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~---------~~~~~--~~d~l~~n~~E~~~l~~ 197 (304)
T cd01172 135 ADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRD---------YSKYR--GATLLTPNEKEAREALG 197 (304)
T ss_pred CCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc---------hhhcc--CCcEeCCCHHHHHHHhC
Confidence 9999997 32 13567888999999999999999997541 14455 89999999999998865
No 33
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.90 E-value=3.4e-22 Score=170.35 Aligned_cols=185 Identities=15% Similarity=0.070 Sum_probs=143.4
Q ss_pred CeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC
Q 026265 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (241)
Q Consensus 16 ~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~ 95 (241)
.+|+++++||++|+++.+ +++| .|.... .....+++||+++|+|++++ +||.
T Consensus 3 ~~~~~~~~~p~~D~~~~~-----~~~~--~~~~~~--------------------~~~~~~~~GG~~~Nva~~la-~lG~ 54 (312)
T PRK09513 3 RRVATITLNPAYDLVGFC-----PEIE--RGEVNL--------------------VKTTGLHAAGKGINVAKVLK-DLGI 54 (312)
T ss_pred ceEEEEecChHHeEEEEc-----Ccee--cCCeee--------------------ecceeecCCchHHHHHHHHH-HcCC
Confidence 568888889999999999 4565 243222 23788999999999999999 8999
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCC------hhhhC
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVK 169 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~------~~~i~ 169 (241)
++.++|.+|+|.+|++ ++.|++.||++.++. .+++|+.++++++++|+|+++.+.+. .+++.+.+ .+.++
T Consensus 55 ~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 130 (312)
T PRK09513 55 DVTVGGFLGKDNQDGF-QQLFSELGIANRFQV-VQGRTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLG 130 (312)
T ss_pred CeEEEEEecCccHHHH-HHHHHHcCCCccEEE-CCCCCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcC
Confidence 9999999999999997 689999999987654 44578999898887888887766553 34443322 24578
Q ss_pred CccEEEEEecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++|++|+++.. .+.+.+.++++.+++.|.+++||++... +++.+. ...+++++|++|+..|+|
T Consensus 131 ~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--------~~~~~~-~~~~~l~~n~~E~~~l~g 196 (312)
T PRK09513 131 QFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSREA--------LVAGLK-AAPWLVKPNRRELEIWAG 196 (312)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChHH--------HHHHhc-cCCeEEcCCHHHHHHHhC
Confidence 99999999432 1357788889999999999999997531 333333 278999999999998875
No 34
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.89 E-value=4.8e-22 Score=169.20 Aligned_cols=186 Identities=22% Similarity=0.253 Sum_probs=143.3
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++.+||.+|+++.+ ++++ .|+...+ ......+||++.|+|++++ +||.+
T Consensus 3 ~i~~~~~~p~~d~~~~~-----~~~~--~~~~~~~--------------------~~~~~~~GG~~~NvA~~l~-~lG~~ 54 (309)
T PRK10294 3 RIYTLTLAPSLDSATIT-----PQIY--PEGKLRC--------------------SAPVFEPGGGGINVARAIA-HLGGS 54 (309)
T ss_pred eEEEEecChHHeEEEEe-----Ccee--eCCeEEe--------------------ccceecCCccHHHHHHHHH-HcCCC
Confidence 57888889999999999 4553 4443332 3677889999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCCh-----hhhCCc
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-----EDVKGS 171 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~-----~~i~~~ 171 (241)
+.+++.+|+ .+|+++++.|++.||++.++...+..++.++++++++|+|+++.++++ .++.++++. ..++++
T Consensus 55 ~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 131 (309)
T PRK10294 55 ATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESG 131 (309)
T ss_pred eEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCC--CCCHHHHHHHHHHHHhcCCC
Confidence 999999996 799999999999999999988765545555667777888887777664 355544432 236789
Q ss_pred cEEEEEecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 172 KWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 172 ~~v~~~~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+++|++..+ .+.+.+.++++.+++.|++++||++... .+..+ .++ ++|++++|++|+..|+|
T Consensus 132 ~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~--~~~--~~~~i~~n~~E~~~l~g 196 (309)
T PRK10294 132 AILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGDA----LSAAL--AIG--NIELVKPNQKELSALVN 196 (309)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHH----HHHHH--hcC--CCeEECCCHHHHHHHhC
Confidence 999998332 2357888999999999999999997541 11111 133 79999999999998875
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.89 E-value=5.1e-22 Score=169.05 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=139.3
Q ss_pred EEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCce
Q 026265 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (241)
Q Consensus 18 v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~~ 97 (241)
|+++.+||++|.++.+ ++++. +++..+ ......+||+++|+|++++ +||.++
T Consensus 2 ~~~~t~np~~D~~~~~-----~~~~~--~~~~~~--------------------~~~~~~~GG~~~NvA~~la-~LG~~~ 53 (309)
T PRK13508 2 ILTVTLNPSIDISYPL-----DELKL--DTVNRV--------------------VDVSKTAGGKGLNVTRVLS-EFGENV 53 (309)
T ss_pred EEEEecChHHeEEEEe-----CCeee--CCeEEe--------------------cceeecCCchHHHHHHHHH-HcCCCe
Confidence 5556569999999999 45542 233221 2577899999999999999 899999
Q ss_pred eEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCC------hhhhCCc
Q 026265 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVKGS 171 (241)
Q Consensus 98 ~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~------~~~i~~~ 171 (241)
.++|.+|+ .+|+.+++.|++ ||++.++.. ++.|+.++++++ +|+|+++.++++. ++.++.. .+.++++
T Consensus 54 ~~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~-~~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 127 (309)
T PRK13508 54 LATGLIGG-ELGQFIAEHLDD-QIKHAFYKI-KGETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESV 127 (309)
T ss_pred EEEEEecC-hhHHHHHHHHHc-CCCceEEEC-CCCCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCC
Confidence 99999995 789999999999 999887654 346888888886 7899988777652 3333221 2357899
Q ss_pred cEEEEEecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 172 KWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 172 ~~v~~~~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
|++|++... .+.+.+..+++.+++.|++++||+++.. . ..+...+. ++|++++|++|++.++|
T Consensus 128 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~-~~~~~~~~--~~dii~~n~~E~~~l~g 193 (309)
T PRK13508 128 EVVAISGSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAA----L-QAVLESPY--KPTVIKPNIEELSQLLG 193 (309)
T ss_pred CEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHH----H-HHHHhccC--CceEEccCHHHHHHHhC
Confidence 999999432 2346678889999999999999998542 1 22333344 89999999999998875
No 36
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.89 E-value=8.4e-22 Score=167.71 Aligned_cols=182 Identities=16% Similarity=0.239 Sum_probs=138.7
Q ss_pred EecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCceeE
Q 026265 20 GLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGL 99 (241)
Q Consensus 20 ~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~~~~ 99 (241)
.+-+||.+|.++.+ ++++ .+++..+ ......+||+++|+|++|+ +||.++.+
T Consensus 3 ~~~~~p~~d~~~~~-----~~~~--~~~~~~~--------------------~~~~~~~GG~~~NvA~~la-~LG~~v~~ 54 (309)
T TIGR01231 3 TVTLNPSVDISYPL-----TALK--LDTVNRV--------------------QEVSKTAGGKGLNVTRVLA-QVGDPVLA 54 (309)
T ss_pred EEEcchHHeEEEEc-----CCee--eCceEee--------------------ceeeecCCccHHHHHHHHH-HcCCCeEE
Confidence 33458999999998 4454 2333221 3678999999999999999 89999999
Q ss_pred EeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCccc----CC--hhhhCCccE
Q 026265 100 IGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE----LI--AEDVKGSKW 173 (241)
Q Consensus 100 vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~----~~--~~~i~~~~~ 173 (241)
+|.+|+ ++|+++++.|++.||++.++... ..|+.++.+++ +|+|+++.++++. +..+. +. .+.++++++
T Consensus 55 i~~vG~-~~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 129 (309)
T TIGR01231 55 SGFLGG-KLGEFIEKELDHSDIKHAFYKIS-GETRNCIAILH-EGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEV 129 (309)
T ss_pred EEEecC-hhHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEe-CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCE
Confidence 999996 59999999999999999887764 46778888775 7899988777753 22111 11 245789999
Q ss_pred EEEEecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 174 LVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 174 v~~~~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+|++..+ .+...+..+++.+++.|+++++|++... . ..+.+.+. ++|++++|++|++.|+|
T Consensus 130 v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~-~~~~~~~~--~~dil~~n~~E~~~l~g 193 (309)
T TIGR01231 130 VAISGSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGAT----L-QTVLENPA--KPTVIKPNIEELSQLLN 193 (309)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHH----H-HHHHhccC--CCeEEcCCHHHHHHHhC
Confidence 9999432 2467788999999999999999998642 1 22333344 89999999999998875
No 37
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.88 E-value=2.3e-21 Score=165.29 Aligned_cols=189 Identities=22% Similarity=0.267 Sum_probs=136.9
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCC-CCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGE-RGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
+++|+++| .+++|+++..+- ++++.. ++.. +........+|| ++|+|.+++ +|
T Consensus 7 ~~~il~iG-~~~iD~~~~~~~---~~~~~~~~~~~--------------------~~~~~~~~~~GG-a~NvA~~l~-~l 60 (315)
T TIGR02198 7 GAKVLVVG-DVMLDRYWYGKV---SRISPEAPVPV--------------------VKVEREEDRLGG-AANVARNIA-SL 60 (315)
T ss_pred CCcEEEEC-ceeEeeeeeecc---cccCCCCCCce--------------------EEEEEEEecCcH-HHHHHHHHH-hc
Confidence 57799999 999999987321 222110 0000 001245678888 799999999 89
Q ss_pred CCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCccc----CC--hh
Q 026265 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADE----LI--AE 166 (241)
Q Consensus 94 G~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~----~~--~~ 166 (241)
|.++.++|.+|+|.+|+++++.|++.||++.++.+.++ +|+.+++++++++ +.+.........++... +. .+
T Consensus 61 g~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (315)
T TIGR02198 61 GARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQ-QLLRVDFEERDPINAELEARLLAAIRE 139 (315)
T ss_pred CCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCe-EEEEecCCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988877655 8999999887532 22222222212233211 11 23
Q ss_pred hhCCccEEEEE-ec--cccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 167 DVKGSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 167 ~i~~~~~v~~~-~~--~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.++++|++|++ +. ..+++.+..+++.+++.|++++||+++. .+..++ ++|++++|++|++.|+|
T Consensus 140 ~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~~~~~~--~~d~l~~n~~E~~~l~~ 206 (315)
T TIGR02198 140 QLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGK---------DFSRYR--GATLITPNRKEAEAAVG 206 (315)
T ss_pred hhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCc---------chhhcC--CCcEECCCHHHHHHHhC
Confidence 57899999998 32 1357788899999999999999999743 123455 89999999999999875
No 38
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.88 E-value=1.7e-21 Score=165.24 Aligned_cols=178 Identities=23% Similarity=0.249 Sum_probs=138.2
Q ss_pred CCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCceeEEee
Q 026265 23 PAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102 (241)
Q Consensus 23 ~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~~~~vg~ 102 (241)
.|+.+|+++.++ ++ ..|.... ..+...++||++.|+|++++ |||.++.++|.
T Consensus 6 ~~~~~D~~~~~~-----~~--~~~~~~~--------------------~~~~~~~~GG~~~N~a~~l~-~lg~~~~~i~~ 57 (303)
T TIGR03168 6 LNPAIDLTIEVD-----GL--TPGEVNR--------------------VAAVRKDAGGKGINVARVLA-RLGAEVVATGF 57 (303)
T ss_pred cchHHeEEEEcC-----cc--ccCceee--------------------cCcccccCCcchhhHHHHHH-HcCCCeEEEEE
Confidence 489999999994 33 2333221 23678999999999999999 89999999999
Q ss_pred ecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCCh------hhhCCccEEEE
Q 026265 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKWLVL 176 (241)
Q Consensus 103 vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~------~~i~~~~~v~~ 176 (241)
+|+| +|+.+++.|++.||++.++... ..|+.++++++++|+|+.+.+.+. .++.++++. +.++++|++|+
T Consensus 58 vG~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i 133 (303)
T TIGR03168 58 LGGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPGP--EISEEELEQLLEKLRELLASGDIVVI 133 (303)
T ss_pred eCCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcCC--CCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 9998 7999999999999999988875 467888888887788776655553 466555431 34789999999
Q ss_pred Eecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 177 RFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 177 ~~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+... .+.+.+..+++.+++.|++++||++.. .+++.+. .++|++++|+.|+..|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~--------~~~~~~~-~~~dil~~n~~E~~~l~g 192 (303)
T TIGR03168 134 SGSLPPGVPPDFYAQLIAIARKRGAKVILDTSGE--------ALREALA-AKPFLIKPNHEELEELFG 192 (303)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcH--------HHHHHHh-cCCcEECCCHHHHHHHhC
Confidence 8321 356778889999999999999999753 1233332 179999999999999875
No 39
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.3e-21 Score=162.85 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=152.8
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcC
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG 94 (241)
++.|+++| +.++|++..+ +++|.+ | .+ .+++.+...+||+++|+|++++ |||
T Consensus 9 ~~~vv~fG-s~~~D~V~~~-----~~~p~~-g-e~-------------------~~~~~f~~~~GG~~aN~Avaaa-rLG 60 (330)
T KOG2855|consen 9 PPLVVVFG-SMLIDFVPST-----RRLPNA-G-ET-------------------WEPPGFKTAPGGKGANQAVAAA-RLG 60 (330)
T ss_pred CceEEEec-cceeeeeecc-----ccCCCc-c-cc-------------------ccCCcceecCCCcchhhhhHHH-hcC
Confidence 46899999 9999999999 567643 1 11 1235899999999999999999 999
Q ss_pred CceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeeeCccccCCCCc--ccCChhhhCCc
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQA--DELIAEDVKGS 171 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~~~g~~~~l~~--~~~~~~~i~~~ 171 (241)
.++.|+|.||+|.+|+.+++.|++.+|+++++...++ +|+.+.+++..+|++.+.++.+++....+ .++..+.++.+
T Consensus 61 ~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~a 140 (330)
T KOG2855|consen 61 GRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEA 140 (330)
T ss_pred cceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhc
Confidence 9999999999999999999999999999999998877 89999999988999999988887765554 45667889999
Q ss_pred cEEEEEecccc--HH--HHHHHHHHHHHCCCeEEEeCCchHHH----hhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 172 KWLVLRFGMFN--FE--VIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 172 ~~v~~~~~~~~--~~--~~~~~~~~a~~~g~~i~~D~~~~~~~----~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+++|+...... .. .....++.+++.|..+++|+...... ...+..+..+.. .+|++...++|++.++|
T Consensus 141 k~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~--~adv~~~s~~e~~fl~~ 216 (330)
T KOG2855|consen 141 KVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWN--MADVIKVSSQELAFLTG 216 (330)
T ss_pred cEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhh--hhhcccccHHHHHHhcc
Confidence 99999954311 11 11222456778888888888755421 112223334444 88999999988888754
No 40
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.88 E-value=2.3e-21 Score=163.48 Aligned_cols=180 Identities=24% Similarity=0.269 Sum_probs=138.1
Q ss_pred EEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCcee
Q 026265 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (241)
Q Consensus 19 ~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~~~ 98 (241)
.++| ++++|++++++ ++| ++.... ..+....+||+++|+|.+|+ +||.++.
T Consensus 4 ~~~~-~~~~D~~~~~~-----~~~--~~~~~~--------------------~~~~~~~~GG~~~Nva~~la-~lG~~v~ 54 (289)
T cd01164 4 TVTL-NPAIDLTIELD-----QLQ--PGEVNR--------------------VSSTRKDAGGKGINVARVLK-DLGVEVT 54 (289)
T ss_pred EEec-ChHHeEEEEcC-----ccc--CCceee--------------------cccccccCCcchhHHHHHHH-HcCCCeE
Confidence 3566 99999999994 553 232211 23677899999999999999 8999999
Q ss_pred EEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCCh------hhhCCcc
Q 026265 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSK 172 (241)
Q Consensus 99 ~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~------~~i~~~~ 172 (241)
++|.+|+| +|+++++.|++.||++.++... .+|++++++++.+|+++.+...++ .+++++++. +.+++++
T Consensus 55 ~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 130 (289)
T cd01164 55 ALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPGP--EISEEELEALLEKLKALLKKGD 130 (289)
T ss_pred EEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhcCCCC
Confidence 99999998 8999999999999999988765 468888888876677766655443 355444421 3467899
Q ss_pred EEEEEecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhh-cCCCccEEecCHHHHHhhhC
Q 026265 173 WLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLL-ESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 173 ~v~~~~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l-~~~~~d~l~~N~~Ea~~l~g 241 (241)
++|++... .+.+....+++.+++.++++++|++... +++.+ + ++|++++|++|++.++|
T Consensus 131 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~--------~~~~~~~--~~dil~~n~~E~~~l~~ 193 (289)
T cd01164 131 IVVLSGSLPPGVPADFYAELVRLAREKGARVILDTSGEA--------LLAALAA--KPFLIKPNREELEELFG 193 (289)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChHH--------HHHHHhc--CCcEECCCHHHHHHHhC
Confidence 99998432 1236788889989999999999997531 22333 4 89999999999998874
No 41
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.87 E-value=2.7e-21 Score=160.69 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=130.0
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| .+++|++.+.+ +.++||++.|+|++++ +||.+
T Consensus 2 ~v~~iG-~~~~D~~~~~~----------------------------------------~~~~GG~~~NvA~~l~-~lG~~ 39 (260)
T PRK09813 2 KLATIG-DNCVDIYPQLG----------------------------------------KAFSGGNAVNVAVYCT-RYGIQ 39 (260)
T ss_pred eEEEec-cceeeecccCC----------------------------------------ccccCccHHHHHHHHH-HcCCc
Confidence 699999 99999985541 2589999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCc-cccCCCCcccCChhhhCCccEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIAEDVKGSKWLV 175 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~-g~~~~l~~~~~~~~~i~~~~~v~ 175 (241)
+.++|.+|+|.+|+++++.|++.||+++++.+.+++|+.+++.++ +|+|++..+. ++...+..++...+.+++++++|
T Consensus 40 ~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 118 (260)
T PRK09813 40 PGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVH 118 (260)
T ss_pred ceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEEE
Confidence 999999999999999999999999999999887678999888885 6889887554 44344433333335678999999
Q ss_pred EEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHH
Q 026265 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~E 235 (241)
++.. ....++++.++++|++++||++... ..+.+..+++ ++|++++|+++
T Consensus 119 ~~~~----~~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~~~~--~~d~~~~~~~~ 168 (260)
T PRK09813 119 AAIW----GHAEDAFPQLHAAGKLTAFDFSDKW----DSPLWQTLVP--HLDYAFASAPQ 168 (260)
T ss_pred Eecc----chHHHHHHHHHHcCCeEEEEcCCCc----cHHHHHHhCC--ceeEEEecCCc
Confidence 9831 1234667778899999999997542 1123455666 99999998553
No 42
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.86 E-value=9.1e-21 Score=170.27 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=135.7
Q ss_pred CCeEEEecCCeeeEEEeecCHhHHhhCCC-CCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 15 AALILGLQPAALIDHVARVDWSLLDQIPG-ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 15 ~~~v~~iG~~~~vD~~~~~~~~~l~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
..+|+++| .+++|+++.++. ++++. .++.. +........+|| ++|+|++++ +|
T Consensus 10 ~~~ilviG-~~~lD~~~~~~~---~~~~~~~~~~~--------------------~~~~~~~~~~GG-a~NvA~~la-~L 63 (473)
T PRK11316 10 RAGVLVVG-DVMLDRYWYGPT---SRISPEAPVPV--------------------VKVNQIEERPGG-AANVAMNIA-SL 63 (473)
T ss_pred CCcEEEEC-ccEEeeeeeccc---ceeCCCCCCCE--------------------EEeeeEEecCcH-HHHHHHHHH-Hc
Confidence 35699999 999999998632 23321 11100 112367788999 699999999 89
Q ss_pred CCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCC---hhhhCC
Q 026265 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI---AEDVKG 170 (241)
Q Consensus 94 G~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~---~~~i~~ 170 (241)
|.++.++|.+|+|.+|+++++.|++.||+++++.+.+.+|+.++++++.+++............++.+.+. .+.+++
T Consensus 64 G~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 143 (473)
T PRK11316 64 GAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPS 143 (473)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999988877545799999988744332221111111222333321 245789
Q ss_pred ccEEEEE-eccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 171 SKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 171 ~~~v~~~-~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++++|++ +.....+.+..+++.+++.|+++++|+++.. + ..++ .+|++++|++|++.|+|
T Consensus 144 ~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp~~~~--------~-~~~~--~~dil~pN~~Ea~~l~g 204 (473)
T PRK11316 144 IGALVLSDYAKGALASVQAMIQLARKAGVPVLIDPKGTD--------F-ERYR--GATLLTPNLSEFEAVVG 204 (473)
T ss_pred CCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeCCCCC--------c-cccC--CCeEECcCHHHHHHHhC
Confidence 9999998 4211235678889999999999999997431 1 2234 89999999999998875
No 43
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.7e-20 Score=154.83 Aligned_cols=184 Identities=25% Similarity=0.306 Sum_probs=149.3
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++-.||.+|+++.+++ + ..|.... .......+||+|.|||+.|+ .||.+
T Consensus 1 mI~TvTLNPaiD~~~~l~~-----l--~~g~vNr--------------------~~~~~~~aGGKGINVa~vL~-~lG~~ 52 (310)
T COG1105 1 MIYTVTLNPALDYTVFLDE-----L--ELGEVNR--------------------VRAVTKTAGGKGINVARVLK-DLGIP 52 (310)
T ss_pred CeEEEecChhHhheeeccc-----c--cccceee--------------------eccceecCCCCceeHHHHHH-HcCCC
Confidence 4677778999999999943 3 1222211 13788999999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcC-CCCeeeeeCccccCCCCcccCCh------hhhC
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCLSNAVKIQADELIA------EDVK 169 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~-~g~r~~~~~~g~~~~l~~~~~~~------~~i~ 169 (241)
+..+|.+|.+ .|+++.+.|++.||...++.+. +.|+.++.+.+. +|+.|-+-.+| ..++++++.. ..++
T Consensus 53 ~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~-g~TRinvki~~~~~~~~Tein~~G--p~is~~~~~~~l~~~~~~l~ 128 (310)
T COG1105 53 VTALGFLGGF-TGEFFVALLKDEGIPDAFVEVK-GDTRINVKILDEEDGEETEINFPG--PEISEAELEQFLEQLKALLE 128 (310)
T ss_pred ceEEEecCCc-cHHHHHHHHHhcCCCceEEEcc-CCCeeeEEEEecCCCcEEEecCCC--CCCCHHHHHHHHHHHHHhcc
Confidence 9999999986 6999999999999999888775 689999999986 45566665566 5777766542 3478
Q ss_pred CccEEEEEecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.|+|.+++++ ++.+.+.++++.+++.|+++++|.+.. .|.+.|++ .+++++||.+|.+.++|
T Consensus 129 ~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~--------~L~~~L~~-~P~lIKPN~~EL~~~~g 194 (310)
T COG1105 129 SDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGE--------ALLAALEA-KPWLIKPNREELEALFG 194 (310)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChH--------HHHHHHcc-CCcEEecCHHHHHHHhC
Confidence 89999999754 468999999999999999999999865 35555654 69999999999999986
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.85 E-value=5.1e-20 Score=157.77 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=139.6
Q ss_pred ecccCCCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHH
Q 026265 9 NREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG 88 (241)
Q Consensus 9 ~~~~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~ 88 (241)
+.++.+.++|+++| +.++|+++.++. ....++||+++|+|.+
T Consensus 5 ~~~~~~~~~vlvvG-~~~~D~i~~~g~-------------------------------------~~~~~~GG~a~N~A~a 46 (335)
T PLN02630 5 SKRPIPQRRVLIVG-NYCHDVLIQNGS-------------------------------------VTAESLGGAASFISNV 46 (335)
T ss_pred CCCCCCCCCEEEEe-eeeeeEEEeCCc-------------------------------------EEEEecCcHHHHHHHH
Confidence 34567778999999 999999988721 1347899999999999
Q ss_pred HHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcC-----CCCeeeeeCccccCCCCcccC
Q 026265 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-----SGNRTMRPCLSNAVKIQADEL 163 (241)
Q Consensus 89 la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~-----~g~r~~~~~~g~~~~l~~~~~ 163 (241)
++ |||.++.++|.+|+|.. .+++...+...+.+|+.+++++++ +|+|.++...+++..++++++
T Consensus 47 la-rLG~~~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di 115 (335)
T PLN02630 47 LD-ALSVECELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDI 115 (335)
T ss_pred HH-HcCCceEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHC
Confidence 99 89999999999999952 367765554433479999998876 568899989999999999988
Q ss_pred ChhhhCCccEEEEEeccccHHHHHHHHHHHHH-----CCCeEEEeCCch-HHHhhc-hhhHHhhhcCCCccEEecCHHHH
Q 026265 164 IAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ-----EGLSVSMDLASF-EMVRNF-RTPLLQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 164 ~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~-----~g~~i~~D~~~~-~~~~~~-~~~l~~~l~~~~~d~l~~N~~Ea 236 (241)
+...+..++++++... .+++....+++.++. +|..++||+.+. .....+ ...+.++++ ++|++++|++|+
T Consensus 116 ~~~~~~~~~~~~l~~e-i~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~--~iDil~~ne~Ea 192 (335)
T PLN02630 116 PDMRYEFGMAVGVAGE-ILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLP--RIGFLKASSEEA 192 (335)
T ss_pred CHHHhcccceeeecCC-CcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHHHHH--hCCEEEecHHHH
Confidence 7656788888888744 356788888888888 799999999863 100011 122556777 999999999999
Q ss_pred Hhh
Q 026265 237 AEL 239 (241)
Q Consensus 237 ~~l 239 (241)
+.+
T Consensus 193 ~~l 195 (335)
T PLN02630 193 LFI 195 (335)
T ss_pred hhc
Confidence 865
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.81 E-value=7.6e-19 Score=145.38 Aligned_cols=167 Identities=17% Similarity=0.106 Sum_probs=120.2
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| .+++|++...+ +....+||+++|+|++++ +||.+
T Consensus 1 ~il~iG-~~~iD~~~~~~--------------------------------------~~~~~~GG~~~Nva~~la-~lG~~ 40 (254)
T cd01937 1 KIVIIG-HVTIDEIVTNG--------------------------------------SGVVKPGGPATYASLTLS-RLGLT 40 (254)
T ss_pred CeEEEc-ceeEEEEecCC--------------------------------------ceEEecCchhhhHHHHHH-HhCCC
Confidence 589999 99999997651 346889999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~ 176 (241)
+.++|.+|+|..|+ ++.|++.||++..+ ....|+.+++.++.+|+|+++.+.++....... ...+.++|++|+
T Consensus 41 ~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 113 (254)
T cd01937 41 VKLVTKVGRDYPDK--WSDLFDNGIEVISL--LSTETTTFELNYTNEGRTRTLLAKCAAIPDTES---PLSTITAEIVIL 113 (254)
T ss_pred eEEEEeeCCCchHH--HHHHHHCCcEEEEe--cCCCeEEEEEEecCCCCeeeeeccccCCccccc---ccccCcccEEEE
Confidence 99999999999999 68899999996533 333566666666667888887776654332221 235788999999
Q ss_pred EeccccHHHHHHHHHHHHHCCCeEEEeCCchHH-HhhchhhHHhhhcCCCccEEecCHHHHHh
Q 026265 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEM-VRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (241)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~-~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~ 238 (241)
+. .+.+....+.+. ..++++|++.... .......+.++++ ++|++++|++|++.
T Consensus 114 ~~--~~~~~~~~~~~~----~~~v~~D~~~~~~~~~~~~~~~~~~l~--~~di~~~n~~E~~~ 168 (254)
T cd01937 114 GP--VPEEISPSLFRK----FAFISLDAQGFLRRANQEKLIKCVILK--LHDVLKLSRVEAEV 168 (254)
T ss_pred CC--CcchhcHHHHhh----hhheeEccccceeeccccchHHHhhcc--cCcEEEEcHHHHhh
Confidence 83 233444444332 2789999975310 0011111346677 99999999999975
No 46
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.80 E-value=2.1e-18 Score=144.60 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=110.7
Q ss_pred ceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEE--cCCCCeeeee
Q 026265 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLV--DASGNRTMRP 150 (241)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~--~~~g~r~~~~ 150 (241)
....+||++.|+|.+++ ||| ++.++|.+|+| +|+.+++.|++.||+++++.+.++ +|....... +.+++++...
T Consensus 20 ~~~~~GG~a~N~a~~la-~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~ 96 (277)
T cd01946 20 VDKALGGSATYFSLSAS-YFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDT 96 (277)
T ss_pred eeeccCchHHHHHHHHH-Hhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhh
Confidence 34679999999999999 898 79999999999 899999999999999999887654 452211110 0123333332
Q ss_pred CccccCCCCcccCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 151 CLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 151 ~~g~~~~l~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
..+....+++. + .+.+++++++|++. .+++...++++.+++. .+++||+...+. ....+.+.++++ ++|+++
T Consensus 97 ~~~~~~~~~~~-~-~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~-~~v~~D~~~~~~-~~~~~~~~~~l~--~~d~~~ 168 (277)
T cd01946 97 DLNVFADFDPQ-L-PEHYKDSEFVFLGN--IAPELQREVLEQVKDP-KLVVMDTMNFWI-SIKPEKLKKVLA--KVDVVI 168 (277)
T ss_pred hhhHHhhcCCC-C-hHHhhcCCEEEECC--CCHHHHHHHHHHHHhC-CEEEEccHHHhh-hhhHHHHHHHhc--cCCEEe
Confidence 22222223221 2 24578899999984 3567778888888877 889999843210 112345677888 999999
Q ss_pred cCHHHHHhhhC
Q 026265 231 ANEDEAAELVR 241 (241)
Q Consensus 231 ~N~~Ea~~l~g 241 (241)
+|++|++.|+|
T Consensus 169 ~n~~E~~~l~g 179 (277)
T cd01946 169 INDGEARQLTG 179 (277)
T ss_pred CCHHHHHHHhC
Confidence 99999998875
No 47
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.6e-18 Score=136.86 Aligned_cols=189 Identities=21% Similarity=0.326 Sum_probs=148.7
Q ss_pred CCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
+...|+|+| .+.+|++..+ +.+|.+.....- -+..++-||.+.|+..++. +|
T Consensus 3 ~~k~VLcVG-~~~lD~iTiv-----d~~~fe~~~~r~---------------------~~g~wqRgG~asNvcTvlr-lL 54 (308)
T KOG2947|consen 3 EPKQVLCVG-CTVLDVITIV-----DKYPFEDSEIRC---------------------LSGRWQRGGNASNVCTVLR-LL 54 (308)
T ss_pred CcceEEEec-cEEEEEEEec-----cCCCCCccceeh---------------------hhhhhhcCCCcchHHHHHH-Hh
Confidence 346799999 9999999999 677755332110 1567899999999999999 89
Q ss_pred CCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEc-CCCCeeeeeCccccCCCCcccCChhhhCCcc
Q 026265 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIAEDVKGSK 172 (241)
Q Consensus 94 G~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~-~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~ 172 (241)
|.++.|+|.+......+.+++.|++.|||+++....+.....+.++++ ..|.||++.+..+.+..+.+++.+-.++++.
T Consensus 55 G~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvdl~qy~ 134 (308)
T KOG2947|consen 55 GAPCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVDLTQYG 134 (308)
T ss_pred CCchheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcccceee
Confidence 999999999999989999999999999999998877665555555555 4789999988888889999998877899999
Q ss_pred EEEEEeccccHHH---HHHHHHHHH----HCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhh
Q 026265 173 WLVLRFGMFNFEV---IQAAIRIAK----QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (241)
Q Consensus 173 ~v~~~~~~~~~~~---~~~~~~~a~----~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l 239 (241)
|+|+..-- +++. ++.+.+.-. +.++.+++|+- +.++.+.++.. ++||+|.+.+-|+.+
T Consensus 135 WihfE~Rn-p~etlkM~~~I~~~N~r~pe~qrI~vSvd~e------n~req~~~l~a--m~DyVf~sK~~a~~~ 199 (308)
T KOG2947|consen 135 WIHFEARN-PSETLKMLQRIDAHNTRQPEEQRIRVSVDVE------NPREQLFQLFA--MCDYVFVSKDVAKHL 199 (308)
T ss_pred eEEEecCC-hHHHHHHHHHHHHhhcCCCccceEEEEEEec------CcHHHHHHHhh--cccEEEEEHHHHhhh
Confidence 99999421 3333 233322211 24678899985 56778888888 999999998877765
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=4.5e-16 Score=131.48 Aligned_cols=191 Identities=20% Similarity=0.261 Sum_probs=138.7
Q ss_pred CCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhc
Q 026265 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (241)
Q Consensus 14 ~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~L 93 (241)
...+|+++| ..++|.+++..- +++. +|.. -|.++......++|| ++|||.+++ .|
T Consensus 9 ~~~kVLVvG-DvmLDrY~~G~~---~RIS----------PEAP---------VPVv~v~~e~~rlGG-AaNVa~Nia-sL 63 (467)
T COG2870 9 KQAKVLVVG-DVMLDRYWYGKV---SRIS----------PEAP---------VPVVKVEKEEERLGG-AANVAKNIA-SL 63 (467)
T ss_pred cCCcEEEEc-ceeeeeeccccc---cccC----------CCCC---------CceEEeccccccccc-HHHHHHHHH-Hc
Confidence 356899999 999999998742 2332 1111 122345677889988 999999999 79
Q ss_pred CCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCC-cccC-C--hhhhC
Q 026265 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQ-ADEL-I--AEDVK 169 (241)
Q Consensus 94 G~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~-~~~~-~--~~~i~ 169 (241)
|.++.++|.+|.|..|+.+.+.|.+.+|+...+.....+|.....++. ..++-+........... .+.+ + .+.+.
T Consensus 64 Ga~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s-~nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~ 142 (467)
T COG2870 64 GANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLS-RNQQLLRLDFEEKFPIEDENKLLEKIKNALK 142 (467)
T ss_pred CCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeec-ccceEEEecccccCcchhHHHHHHHHHHHhh
Confidence 999999999999999999999999999997666666568988888885 33344433322111111 1111 1 35689
Q ss_pred CccEEEEE-eccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~-~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+++.++ |.---...+..+++.|++.|+++.+||-+. ++.. |+.+..++||..|+++..|
T Consensus 143 ~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~--------Df~~---Y~GAtLiTPN~~E~~~~vg 204 (467)
T COG2870 143 SFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGK--------DFEK---YRGATLITPNLKEFEEAVG 204 (467)
T ss_pred cCCEEEEeccccccchhHHHHHHHHHHcCCcEEECCCCc--------chhh---hCCCeecCCCHHHHHHHHc
Confidence 99999999 753222337889999999999999999754 2333 2389999999999998765
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.65 E-value=3.4e-15 Score=118.46 Aligned_cols=124 Identities=28% Similarity=0.354 Sum_probs=97.4
Q ss_pred eEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCc
Q 026265 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (241)
Q Consensus 17 ~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~ 96 (241)
+|+++| ++++|+++.+ +++|.+.+... .......+||++.|+|.+++ +||.+
T Consensus 1 ~v~~iG-~~~~D~~~~~-----~~~~~~~~~~~---------------------~~~~~~~~GG~~~n~a~~l~-~LG~~ 52 (196)
T cd00287 1 RVLVVG-SLLVDVILRV-----DALPLPGGLVR---------------------PGDTEERAGGGAANVAVALA-RLGVS 52 (196)
T ss_pred CEEEEc-cceEEEEEEe-----ccCCCCCCeEE---------------------eceeeecCCCcHHHHHHHHH-HCCCc
Confidence 489999 9999999999 45654322211 23678999999999999999 89999
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~ 176 (241)
+.++| +|++|+
T Consensus 53 ~~~~~---------------------------------------------------------------------~~~v~i 63 (196)
T cd00287 53 VTLVG---------------------------------------------------------------------ADAVVI 63 (196)
T ss_pred EEEEE---------------------------------------------------------------------ccEEEE
Confidence 99999 899999
Q ss_pred EeccccH-HHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 177 RFGMFNF-EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 177 ~~~~~~~-~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++.. +. +.+.++++.+++.|+++++|++...... ....+.++++ ++|++++|++|++.|+|
T Consensus 64 ~~~~-~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~-~~~~~~~~~~--~~dvl~~n~~E~~~l~~ 125 (196)
T cd00287 64 SGLS-PAPEAVLDALEEARRRGVPVVLDPGPRAVRL-DGEELEKLLP--GVDILTPNEEEAEALTG 125 (196)
T ss_pred eccc-CcHHHHHHHHHHHHHcCCeEEEeCCcccccc-ccchHHHHHh--hCCEECCCHHHHHHHhC
Confidence 9542 33 6788899999999999999998653211 1122556677 99999999999998865
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.11 E-value=5.3e-10 Score=96.26 Aligned_cols=160 Identities=23% Similarity=0.302 Sum_probs=112.4
Q ss_pred CcccceeecccCCCCeEEEecCCeeeEEEeecCHhHHhhCCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCCh
Q 026265 2 GAEHLIINREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGS 81 (241)
Q Consensus 2 ~~~~~~~~~~~~~~~~v~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~ 81 (241)
+++.++.|+.++-..+=+++| ..++|..++++++. ..+|++. +....+..||.
T Consensus 327 ~k~k~~s~~~~~~~~KPv~vG-a~i~D~~~k~d~d~-----K~dG~sy---------------------~~~~~Qa~GGV 379 (614)
T KOG3009|consen 327 LKNKSQSQPTASTTRKPVSVG-ATIVDFEAKTDEDV-----KDDGGSY---------------------NGQVVQAMGGV 379 (614)
T ss_pred cccccCCCCccccccCceeec-ceEEEeEEeecccc-----cccCCcc---------------------cchhhhhccch
Confidence 456677777777777779999 99999999997532 1233322 23677899999
Q ss_pred HHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcc
Q 026265 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQAD 161 (241)
Q Consensus 82 ~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~ 161 (241)
+.|.|.+++ +||.++.++++||+|. +++ |. .....++ -
T Consensus 380 arN~A~a~~-~lg~d~~liSavG~d~-----------------------------------n~~--~~--~~~~~~~--~ 417 (614)
T KOG3009|consen 380 ARNHADALA-RLGCDSVLISAVGDDN-----------------------------------NGH--FF--RQNSHKI--V 417 (614)
T ss_pred hhhHHHHHH-HhcCCeeEEEEeccCC-----------------------------------cch--hh--hhhhhhh--h
Confidence 999999999 9999999999999992 111 10 0000111 1
Q ss_pred cCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHH
Q 026265 162 ELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (241)
Q Consensus 162 ~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~ 237 (241)
+...+.+ ++++++++.++ ++..+..+++ ++++..+++|.|.+.++. .+-|.-++. ..++.+.||..|+.
T Consensus 418 e~~~dl~-~a~~I~~DsNi-S~~~Ma~il~-ak~~k~~V~fEPTd~~k~---~K~fk~l~v-~~i~~i~PN~~Ell 486 (614)
T KOG3009|consen 418 ESNEDLL-SADFILLDSNI-SVPVMARILE-AKKHKKQVWFEPTDIDKV---KKVFKTLLV-GAITAISPNANELL 486 (614)
T ss_pred hhhhhhh-cCCEEEEcCCC-CHHHHHHHHH-hhhccCceEecCCCchhh---hhhhhhcce-eeEEeeCCCHHHHH
Confidence 1222334 79999999664 7778888887 999999999999876532 222333332 36899999999974
No 51
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.22 E-value=0.035 Score=49.44 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=85.2
Q ss_pred CceeecCChHHHHHHHHHhhcCCceeE-EeeecCChhHHHHHHHHHhCCceee-------------------------ce
Q 026265 73 PIKTIAGGSVTNTIRGLSVGFGVPCGL-IGAYGDDQQGQLFVSNMQFSGVDVS-------------------------RL 126 (241)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~LG~~~~~-vg~vG~D~~g~~i~~~l~~~gvd~~-------------------------~~ 126 (241)
....+.||.+.-+|..++ ++|..+.+ .++.- ++..++.|...+|-.- ++
T Consensus 85 ~~~~rmGGnAgimAn~la-~lg~~~Vi~~~~~l----sk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~I 159 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLS-ELGASRVVPNVAVP----SKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFV 159 (453)
T ss_pred CceEEeCChHHHHHHHHH-hcCCceEEEcCCCC----CHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEE
Confidence 567999999999999999 89998644 33221 3445555533333222 11
Q ss_pred eecCCCceeEE-----EEEcCCCCeeeeeCccccCCCCc-ccCC---hhhhCCccEEEEE-ecccc---------HHHH-
Q 026265 127 RMKRGPTGQCV-----CLVDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN---------FEVI- 186 (241)
Q Consensus 127 ~~~~~~T~~~~-----~~~~~~g~r~~~~~~g~~~~l~~-~~~~---~~~i~~~~~v~~~-~~~~~---------~~~~- 186 (241)
... +.|..+ -++-|.-+|-++.+...+..+.. +++. .+...++|.+.++ +.++. .+.+
T Consensus 160 fEy--~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~ 237 (453)
T PRK14039 160 FDF--REGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLE 237 (453)
T ss_pred EEe--CCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHH
Confidence 111 122222 12223334444444333333321 2221 1233479999999 44321 1222
Q ss_pred --HHHHHHH--HHCCCeEEEeCCchHHHhhchhhHH-hhhcCCCccEEecCHHHHHhhh
Q 026265 187 --QAAIRIA--KQEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 187 --~~~~~~a--~~~g~~i~~D~~~~~~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
.+.++.. +..++++-|...+..- ..++..+. .+++ ++|-+=+|++|...+.
T Consensus 238 ~~~~~i~~l~~~~~~i~iH~E~As~~~-~~i~~~v~~~Ilp--~VDSlGmNEqELa~l~ 293 (453)
T PRK14039 238 DSLAQLKWWKSKNEKLRIHAELGHFAS-KEIANSVFLILAG--IVDSIGMNEDELAMLA 293 (453)
T ss_pred HHHHHHHHHHhcCCCceEEEEecCccc-HHHHHHHHHHhhc--ccccccCCHHHHHHHH
Confidence 2333333 2245789998865421 13444444 5666 9999999999988764
No 52
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=97.20 E-value=0.0018 Score=54.17 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=49.6
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+..+|++.+++.+.+...+.++++.+++.+.++++|++... +..... ... ..+++++||..|++.|+|
T Consensus 89 ~~~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~~----l~~~~~-~~~-~~~~vItPN~~El~~L~g 157 (272)
T TIGR00196 89 LLERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADALN----LLTYDK-PKR-EGEVILTPHPGEFKRLLG 157 (272)
T ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHHH----HHhhcc-ccc-CCCEEECCCHHHHHHHhC
Confidence 457889999996443444477888888889999999997542 222221 112 268999999999999976
No 53
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=96.92 E-value=0.0032 Score=52.04 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=50.2
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+.+.|+++++..+...+.+..+++.+++.+.++++|+.+....... ... .+.+ .+++++||..|++.|+|
T Consensus 74 ~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~-~~~-~~~~--~~~iltPn~~E~~~L~g 144 (254)
T cd01171 74 LLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADE-PSL-IKRY--GPVVLTPHPGEFARLLG 144 (254)
T ss_pred hhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcC-hhh-hccC--CCEEECCCHHHHHHHhC
Confidence 45678999999544233678888888888899999999755311111 011 1233 78999999999999975
No 54
>PRK07105 pyridoxamine kinase; Validated
Probab=96.83 E-value=0.0026 Score=53.56 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=46.6
Q ss_pred CccEEEEEeccccHH---HHHHHHHHHHHCCCeEEEeCCchHH-------HhhchhhHHhhhcCCCccEEecCHHHHHhh
Q 026265 170 GSKWLVLRFGMFNFE---VIQAAIRIAKQEGLSVSMDLASFEM-------VRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~---~~~~~~~~a~~~g~~i~~D~~~~~~-------~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l 239 (241)
+.|.+++++.. +.+ .+.++++.+++.++++++||..... .+...+.+.++++ ++|+++||+.|++.|
T Consensus 75 ~~~aik~G~l~-~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~--~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIYSGYLG-SPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQ--KADVITPNLTEACLL 151 (284)
T ss_pred ccCEEEECcCC-CHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHh--hCCEecCCHHHHHHH
Confidence 68889988532 444 3444455556668899999963210 0112344567777 999999999999998
Q ss_pred hC
Q 026265 240 VR 241 (241)
Q Consensus 240 ~g 241 (241)
+|
T Consensus 152 ~g 153 (284)
T PRK07105 152 LD 153 (284)
T ss_pred cC
Confidence 75
No 55
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=96.81 E-value=0.0032 Score=51.81 Aligned_cols=77 Identities=25% Similarity=0.213 Sum_probs=49.6
Q ss_pred hhhhCCccEEEEEecccc---HHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 165 AEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 165 ~~~i~~~~~v~~~~~~~~---~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+.++++|++++...+.. .+.+..+++.+++.++++++|+..........+.+.+++....+|+++||..|+..|+|
T Consensus 44 ~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~g 123 (242)
T cd01170 44 EELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALAG 123 (242)
T ss_pred HHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHhC
Confidence 356788999999933223 24455566668888999999996321000111223344540148999999999999975
No 56
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=96.81 E-value=0.0027 Score=52.45 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=48.4
Q ss_pred CCccEEEEEecc--ccHHHHHHHHHHHHHC--CCeEEEeCCchH------HHhhchhhHHhhhcCCCccEEecCHHHHHh
Q 026265 169 KGSKWLVLRFGM--FNFEVIQAAIRIAKQE--GLSVSMDLASFE------MVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (241)
Q Consensus 169 ~~~~~v~~~~~~--~~~~~~~~~~~~a~~~--g~~i~~D~~~~~------~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~ 238 (241)
...+++.+.+.. ...+.+.++++.+++. ++++++||.-.. ..+...+.+.+++. +++|+++||..|++.
T Consensus 71 ~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~-~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLV-PLADIITPNQFELEL 149 (254)
T ss_pred ccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHH-hcCCEECCcHHHHHH
Confidence 567888666421 1356788888888877 899999994210 00122334445444 389999999999999
Q ss_pred hhC
Q 026265 239 LVR 241 (241)
Q Consensus 239 l~g 241 (241)
|+|
T Consensus 150 l~g 152 (254)
T cd01173 150 LTG 152 (254)
T ss_pred HcC
Confidence 875
No 57
>PRK12412 pyridoxal kinase; Reviewed
Probab=96.75 E-value=0.0037 Score=52.20 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=48.7
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCCe-EEEeCCchHH------HhhchhhHH-hhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASFEM------VRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~-i~~D~~~~~~------~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+++.+.+. .+.+.+..+.+.+++.+.+ +++||..... .+...+.+. .+++ ++|+++||+.|++.|+|
T Consensus 72 ~~~~ikiG~l-~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~--~advitpN~~Ea~~L~g 148 (268)
T PRK12412 72 GVDALKTGML-GSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVP--KALVVTPNLFEAYQLSG 148 (268)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhc--cceEEcCCHHHHHHHhC
Confidence 3788998853 3678888888888888876 9999963210 001112233 3566 99999999999999975
No 58
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=96.73 E-value=0.0055 Score=51.57 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=45.6
Q ss_pred hCCccEEEEEeccccHH---HHHHHHHHHHH--CCCeEEEeCCchH------HHhhchhhHH-hhhcCCCccEEecCHHH
Q 026265 168 VKGSKWLVLRFGMFNFE---VIQAAIRIAKQ--EGLSVSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDE 235 (241)
Q Consensus 168 i~~~~~v~~~~~~~~~~---~~~~~~~~a~~--~g~~i~~D~~~~~------~~~~~~~~l~-~~l~~~~~d~l~~N~~E 235 (241)
+.+.|.++++|.. +.+ .+.++++..+. .+.++++||.-.. ..+...+.+. .+++ ++|+++||..|
T Consensus 86 l~~~d~i~~G~l~-s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~--~advitPN~~E 162 (281)
T PRK08176 86 LRQLRAVTTGYMG-SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLP--LAQGLTPNIFE 162 (281)
T ss_pred cccCCEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHh--hcCEeCCCHHH
Confidence 4578999998532 333 44555544433 4788999996211 0011223343 3667 99999999999
Q ss_pred HHhhhC
Q 026265 236 AAELVR 241 (241)
Q Consensus 236 a~~l~g 241 (241)
++.|+|
T Consensus 163 a~~L~g 168 (281)
T PRK08176 163 LEILTG 168 (281)
T ss_pred HHHHhC
Confidence 999976
No 59
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=96.64 E-value=0.0082 Score=49.08 Aligned_cols=69 Identities=20% Similarity=0.088 Sum_probs=47.9
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHC-CCeEEEeCCchHHH------hhchhhHH-hhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFEMV------RNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~-g~~i~~D~~~~~~~------~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+.+.+.+. .+.+.+..+.+.+++. +.++++||...... +...+.+. .+++ ++|+++||..|++.|+|
T Consensus 68 ~~~~i~~G~l-~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIGML-GSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLP--LATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhc--cCeEEeCCHHHHHHHhC
Confidence 5788888753 2577777888888776 88999998643100 01112232 3446 89999999999999976
No 60
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=96.59 E-value=0.004 Score=52.45 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=47.4
Q ss_pred hCCccEEEEEecc--ccHHHHHHHHHHHHHCC--CeEEEeCCchH------HHhhchhhHH-hhhcCCCccEEecCHHHH
Q 026265 168 VKGSKWLVLRFGM--FNFEVIQAAIRIAKQEG--LSVSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDEA 236 (241)
Q Consensus 168 i~~~~~v~~~~~~--~~~~~~~~~~~~a~~~g--~~i~~D~~~~~------~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea 236 (241)
+.++|++++.+.. ...+.+.++++.+++.+ ..+++||.-.. ..+.+.+.+. .+++ ++|+++||..|+
T Consensus 72 ~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~--~adii~pN~~Ea 149 (286)
T TIGR00687 72 LNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIP--VADIITPNQFEL 149 (286)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccc--cccEecCCHHHH
Confidence 4588998666532 12457788888888765 66888993110 0012333343 3556 899999999999
Q ss_pred HhhhC
Q 026265 237 AELVR 241 (241)
Q Consensus 237 ~~l~g 241 (241)
+.|+|
T Consensus 150 ~~L~g 154 (286)
T TIGR00687 150 ELLTG 154 (286)
T ss_pred HHHhC
Confidence 99875
No 61
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=96.50 E-value=0.0084 Score=49.58 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=47.6
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCC-eEEEeCCchHH-----H-hhchhhHH-hhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFEM-----V-RNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~-~i~~D~~~~~~-----~-~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+.+.+.+. .+.+.+..+.+.+++.+. ++++||..... . ....+.+. .+++ ++|+++||..|++.|+|
T Consensus 67 ~~~aikiG~l-~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 143 (254)
T TIGR00097 67 PVDAAKTGML-ASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLP--LATLITPNLPEAEALLG 143 (254)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccc--cccEecCCHHHHHHHhC
Confidence 4677777743 367888888888888888 69999853210 0 00111232 4566 89999999999999875
No 62
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=96.47 E-value=0.01 Score=49.37 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=48.1
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCC-eEEEeCCchHHH------hhchhhHH-hhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFEMV------RNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~-~i~~D~~~~~~~------~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+.+.+.+. .+.+.+..+.+.+++.+. ++++||...... ....+.+. ++++ ++|+++||..|++.|+|
T Consensus 73 ~~~ai~iG~l-~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGML-ASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLP--LATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhC--cCeEEcCCHHHHHHHhC
Confidence 5788888863 367777788888888775 799998522100 01112333 3666 89999999999999975
No 63
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=96.35 E-value=0.012 Score=48.42 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=43.2
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH------HHhhchhhHHh-hhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE------MVRNFRTPLLQ-LLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~------~~~~~~~~l~~-~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+.+.+.|. .+.+.+..+.+..++.+.++++||--.. ..+...+.+.+ +++ .+|+++||..|++.|+|
T Consensus 60 ~~~aikiG~l-~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp--~AdiitPN~~Ea~~L~g 135 (246)
T PF08543_consen 60 KFDAIKIGYL-GSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLP--LADIITPNLTEAELLTG 135 (246)
T ss_dssp C-SEEEE-S--SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGG--G-SEEE-BHHHHHHHHT
T ss_pred cccEEEEccc-CCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCC--cCeEEeCCHHHHHHHhC
Confidence 6888999963 3566666666667777889999983210 01123344444 777 99999999999999986
No 64
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=96.32 E-value=0.01 Score=49.06 Aligned_cols=75 Identities=29% Similarity=0.282 Sum_probs=49.0
Q ss_pred hhhCCccEEEEE-ecccc--HHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhh-HHhhhcCCCccEEecCHHHHHhhhC
Q 026265 166 EDVKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 166 ~~i~~~~~v~~~-~~~~~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~-l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+..+.++.+.+. +.+.+ .+.+..+++.+++.++++++||...... .++.. ..++++..++++|+||..|+..|+|
T Consensus 45 ~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s-~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~g 123 (249)
T TIGR00694 45 ELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGAT-KFRTETALELLSEGRFAAIRGNAGEIASLAG 123 (249)
T ss_pred HHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccc-hhHHHHHHHHHhhcCCceeCCCHHHHHHHhC
Confidence 456778999999 43322 3455666677788899999999643211 12222 2334542247999999999999975
No 65
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=96.31 E-value=0.0095 Score=48.92 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=50.1
Q ss_pred hhhCCccEEEEEecccc---HHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhh-HHhhhcCCCccEEecCHHHHHhhhC
Q 026265 166 EDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~~~---~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~-l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+..+.++.++++....+ .+.+....+.+++.+++++|||-.... -.+|.+ ..+++...++++|++|..|...|.|
T Consensus 45 e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa-s~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag 123 (246)
T PF02110_consen 45 EFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGA-SKFRTEFALELLNNYKPTVIRGNASEIAALAG 123 (246)
T ss_dssp HHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT-BHHHHHHHHHHHCHS--SEEEEEHHHHHHHHT
T ss_pred HHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC-cHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhC
Confidence 45677899999933333 467788888999999999999954431 134444 4456633489999999999998875
No 66
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=96.29 E-value=0.013 Score=48.37 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=69.0
Q ss_pred eEEeeecCChhH-HHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEE
Q 026265 98 GLIGAYGDDQQG-QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (241)
Q Consensus 98 ~~vg~vG~D~~g-~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~ 176 (241)
..++.-|.|+.| .=+...++.. .........+.+++..+++.|.. +.. -....+. +++ +.+...++..+
T Consensus 5 ~vl~iag~d~~ggaG~~aD~~~~----~~~~~~~~~~~t~~t~~~~~G~~-v~~--~~~~~l~-~~l--~~l~~~~~~~i 74 (253)
T PRK12413 5 YILAISGNDIFSGGGLHADLATY----TRNGLHGFVAVTCLTAMTEKGFE-VFP--VDKEIFQ-QQL--DSLKDVPFSAI 74 (253)
T ss_pred eEEEEeeeCCCCHHHHHHHHHHH----HHcCCccCeeeEEEecccCCceE-EEE--CCHHHHH-HHH--HHhhCCCCCEE
Confidence 345666777644 4477666642 11122222456666666666632 211 1111111 111 11233444444
Q ss_pred E-eccccHHHHHHHHHHHH-HCCCeEEEeCCchHH------HhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 177 R-FGMFNFEVIQAAIRIAK-QEGLSVSMDLASFEM------VRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 177 ~-~~~~~~~~~~~~~~~a~-~~g~~i~~D~~~~~~------~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
. +.+-+.+....+++.++ +.+.+++|||..... .+.+.+.+.++++ ++|+++||+.|++.|+|
T Consensus 75 ~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~--~~dli~pN~~E~~~L~g 145 (253)
T PRK12413 75 KIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFP--YVTVITPNLVEAELLSG 145 (253)
T ss_pred EECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhc--cCcEECCCHHHHHHHhC
Confidence 4 22213455555565555 468999999853321 0122334445666 89999999999999976
No 67
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=96.24 E-value=0.012 Score=48.96 Aligned_cols=75 Identities=29% Similarity=0.332 Sum_probs=48.5
Q ss_pred hhhCCccEEEEEeccccHH---HHHHHHHHHHHCCCeEEEeCCchHHHhhchhhH-HhhhcCCCccEEecCHHHHHhhhC
Q 026265 166 EDVKGSKWLVLRFGMFNFE---VIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPL-LQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~~~~~---~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l-~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.++.++.+++...+...+ .+..+++.+++.++++++||...... .++.++ .++++..+.++++||..|+..|+|
T Consensus 50 ~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~-~~~~~~~~~ll~~~~~~vItPN~~E~~~L~g 128 (263)
T PRK09355 50 EMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT-SYRTEFALELLAEVKPAVIRGNASEIAALAG 128 (263)
T ss_pred HHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc-hhhHHHHHHHHHhcCCcEecCCHHHHHHHhC
Confidence 4567889999993333433 35555666788899999999643211 233322 223332267999999999999975
No 68
>PRK05756 pyridoxamine kinase; Validated
Probab=95.90 E-value=0.019 Score=48.31 Aligned_cols=72 Identities=17% Similarity=-0.011 Sum_probs=45.9
Q ss_pred hCCccEEEEEecc--ccHHHHHHHHHHHHHCC--CeEEEeCCchH------HHhhchhhHH-hhhcCCCccEEecCHHHH
Q 026265 168 VKGSKWLVLRFGM--FNFEVIQAAIRIAKQEG--LSVSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDEA 236 (241)
Q Consensus 168 i~~~~~v~~~~~~--~~~~~~~~~~~~a~~~g--~~i~~D~~~~~------~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea 236 (241)
+...+++...+.. ...+.+.++++.+++.+ +.+++||.-.. ..+...+.+. .+++ ++|+++||..|+
T Consensus 72 l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~--~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALP--AADIITPNLFEL 149 (286)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcc--cccEecCCHHHH
Confidence 4578877666521 12467788888877766 45788974221 0011112233 3666 999999999999
Q ss_pred HhhhC
Q 026265 237 AELVR 241 (241)
Q Consensus 237 ~~l~g 241 (241)
+.|+|
T Consensus 150 ~~L~g 154 (286)
T PRK05756 150 EWLSG 154 (286)
T ss_pred HHHhC
Confidence 99875
No 69
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=95.82 E-value=0.029 Score=45.95 Aligned_cols=88 Identities=23% Similarity=0.212 Sum_probs=58.9
Q ss_pred cccCCCCcccCC-hhhhCCccEEEEE-ecccc--HHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhh-HHhhhcCCCcc
Q 026265 153 SNAVKIQADELI-AEDVKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVD 227 (241)
Q Consensus 153 g~~~~l~~~~~~-~~~i~~~~~v~~~-~~~~~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~-l~~~l~~~~~d 227 (241)
|+.+-+....-. .+..+-++.+.++ +.+.. .+.++...+.+++.|.++++||-...- ..+|.. ..++|.+.+++
T Consensus 37 GaSP~Ma~~~eE~~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA-t~~R~~~~~~LL~~~~~~ 115 (265)
T COG2145 37 GASPVMADAPEEVEEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGA-TKFRTKFALELLAEVKPA 115 (265)
T ss_pred CCCchhccCHHHHHHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCc-hHHHHHHHHHHHHhcCCc
Confidence 555544432211 2455667778888 43322 577888899999999999999954321 134544 34466654589
Q ss_pred EEecCHHHHHhhhC
Q 026265 228 LCFANEDEAAELVR 241 (241)
Q Consensus 228 ~l~~N~~Ea~~l~g 241 (241)
+|++|..|...|.|
T Consensus 116 ~IrGN~sEI~~Lag 129 (265)
T COG2145 116 AIRGNASEIAALAG 129 (265)
T ss_pred EEeccHHHHHHHhc
Confidence 99999999988864
No 70
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.80 E-value=0.095 Score=46.88 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=85.0
Q ss_pred CceeecCChHHHHHHHHHhhcCC-ceeEEeeecCChhHHHHHHHHHhCCcee------------eceeecCCCceeEEEE
Q 026265 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDV------------SRLRMKRGPTGQCVCL 139 (241)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~LG~-~~~~vg~vG~D~~g~~i~~~l~~~gvd~------------~~~~~~~~~T~~~~~~ 139 (241)
....+.||.+.-.|..++ ++|. +|.+-+++... ...+.+...+|-. +.+...+....+. -+
T Consensus 100 ~~~~~mGGnAgimAn~la-~~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~-~~ 173 (445)
T cd01938 100 WDELRMGGNAGLMANRLA-GEGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWG-DF 173 (445)
T ss_pred CceEEeCChHHHHHHHHH-hcCCceEEEecCCCcH----HHHHhCCCCCeeecccccCCCCCccEEEEEcCCCCEec-ce
Confidence 567999999999999999 8998 77777665432 2233333222221 1111111112222 12
Q ss_pred EcCCCCeeeeeCccccCCCCcccCChhhhCC-ccEEEEE-ecccc-----HHHHHHHHHHHH------HCCCeEEEeCCc
Q 026265 140 VDASGNRTMRPCLSNAVKIQADELIAEDVKG-SKWLVLR-FGMFN-----FEVIQAAIRIAK------QEGLSVSMDLAS 206 (241)
Q Consensus 140 ~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~-~~~v~~~-~~~~~-----~~~~~~~~~~a~------~~g~~i~~D~~~ 206 (241)
+-|.-+|-++.+...+.....+++-.+..+. +|.++++ +.++. .....+.++.++ +..+++-|.+.+
T Consensus 174 ~aPraNRfI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As 253 (445)
T cd01938 174 VAPRANRFIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAS 253 (445)
T ss_pred EcCCCCeEEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecc
Confidence 2233445555443333322222222233344 9999999 43321 122333333322 234888898865
Q ss_pred hHHHhhchhhHH-hhhcCCCccEEecCHHHHHhhh
Q 026265 207 FEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 207 ~~~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
..- ..++..+. .+++ ++|-+=+|+.|...|+
T Consensus 254 ~~d-~~l~~~i~~~ilp--~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 254 TVD-EELREEILHEVVP--YVDSLGLNEQELANLL 285 (445)
T ss_pred ccc-HHHHHHHHHHhcc--cccccccCHHHHHHHH
Confidence 421 13444444 4666 9999999999987764
No 71
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=95.73 E-value=0.021 Score=51.35 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=46.3
Q ss_pred cEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHH--hhch----hhH-HhhhcCCCccEEecCHHHHHhhhC
Q 026265 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMV--RNFR----TPL-LQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 172 ~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~--~~~~----~~l-~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+.+++ +.+.+.+..+++.+++.|.+++|||...... ..+. +.+ .++++ ++|+++||+.|++.|+|
T Consensus 73 ~~ik~G~-l~~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp--~adli~pN~~Ea~~L~g 146 (448)
T PRK08573 73 DAAKTGM-LSNREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLP--LATVVTPNRPEAEKLTG 146 (448)
T ss_pred CEEEECC-cCCHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhc--cCEEEcCCHHHHHHHhC
Confidence 4555554 2367888999999999999999998422100 0111 122 34666 89999999999999976
No 72
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=95.71 E-value=0.026 Score=46.68 Aligned_cols=68 Identities=19% Similarity=0.078 Sum_probs=45.5
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHHCC-CeEEEeCC-----chH-HHhhchhhHH-hhhcCCCccEEecCHHHHHhhhC
Q 026265 171 SKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLA-----SFE-MVRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~g-~~i~~D~~-----~~~-~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+.+=+. .+.+.+.+..+.+..++.+ .++++||- ... ..+...+.+. ++++ ++++++||..||+.|+|
T Consensus 73 v~avKtG-ML~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP--~a~vvTPNl~EA~~L~g 148 (263)
T COG0351 73 VDAVKTG-MLGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLP--LATVVTPNLPEAEALSG 148 (263)
T ss_pred CCEEEEC-CcCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhc--cCeEecCCHHHHHHHcC
Confidence 3344444 3236788888888888888 77999983 211 1112223333 5677 99999999999999986
No 73
>PRK12616 pyridoxal kinase; Reviewed
Probab=95.71 E-value=0.033 Score=46.55 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=47.0
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCC-CeEEEeCCchHH------HhhchhhHHh-hhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLASFEM------VRNFRTPLLQ-LLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g-~~i~~D~~~~~~------~~~~~~~l~~-~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+.+.+.+. .+.+.+..+.+.+++.+ .++++||..... .....+.+.+ +++ .+|+++||..|++.|+|
T Consensus 74 ~~~aikiG~l-~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~--~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGML-PTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAP--LATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhc--cceEecCCHHHHHHHcC
Confidence 4678888853 35677777888888776 469999964210 0111233433 555 89999999999999875
No 74
>PLN02978 pyridoxal kinase
Probab=95.60 E-value=0.027 Score=48.06 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=45.5
Q ss_pred ccEEEEEecc--ccHHHHHHHHHHHHH--CCCeEEEeCCchHH-----HhhchhhHH-hhhcCCCccEEecCHHHHHhhh
Q 026265 171 SKWLVLRFGM--FNFEVIQAAIRIAKQ--EGLSVSMDLASFEM-----VRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 171 ~~~v~~~~~~--~~~~~~~~~~~~a~~--~g~~i~~D~~~~~~-----~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
.+.+.+.|.. ...+.+.++++.+++ .++++++||..... .+...+.+. ++++ .+|+++||..|++.|+
T Consensus 87 ~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~--~adiitPN~~Ea~~L~ 164 (308)
T PLN02978 87 YTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVP--LATMLTPNQFEAEQLT 164 (308)
T ss_pred cCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHh--hCCeeccCHHHHHHHh
Confidence 6778777531 124566777777776 45678999963210 011223343 4777 9999999999999997
Q ss_pred C
Q 026265 241 R 241 (241)
Q Consensus 241 g 241 (241)
|
T Consensus 165 g 165 (308)
T PLN02978 165 G 165 (308)
T ss_pred C
Confidence 6
No 75
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=95.53 E-value=0.25 Score=44.26 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=82.6
Q ss_pred CceeecCChHHHHHHHHHhhcCCce--eEEeeecCChhHHHHHHHHHh-CCceeec-----e-------ee-cCCCceeE
Q 026265 73 PIKTIAGGSVTNTIRGLSVGFGVPC--GLIGAYGDDQQGQLFVSNMQF-SGVDVSR-----L-------RM-KRGPTGQC 136 (241)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~LG~~~--~~vg~vG~D~~g~~i~~~l~~-~gvd~~~-----~-------~~-~~~~T~~~ 136 (241)
....+.||.+.-+|..++ ++|... .+.+.++ +..++.|.. .++-.-- + .. .+.++-.-
T Consensus 96 ~~~~rmGGqAgimAn~la-~lg~~~vV~~~p~ls-----k~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH 169 (463)
T PRK03979 96 YDEERMGGQAGIISNLLA-ILDLKKVIAYTPWLS-----KKQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKIN 169 (463)
T ss_pred cceEEeCChHHHHHHHHH-hcCCceEEEeCCCCC-----HHHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceE
Confidence 455799999999999999 899884 4444444 344455522 1221110 0 00 01122222
Q ss_pred EEEEcCCC---------------CeeeeeCccccCCCCc-ccCC---hhhhCCccEEEEE-ecccc------------HH
Q 026265 137 VCLVDASG---------------NRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN------------FE 184 (241)
Q Consensus 137 ~~~~~~~g---------------~r~~~~~~g~~~~l~~-~~~~---~~~i~~~~~v~~~-~~~~~------------~~ 184 (241)
+|+-=+.| +|-++.+...+..+.. +++. .+.-.++|.+.++ +..+. .+
T Consensus 170 ~I~Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~ 249 (463)
T PRK03979 170 RIFEFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLK 249 (463)
T ss_pred EEEEeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhccccccccHHHHHH
Confidence 22222233 3433333332233321 1221 1223569999999 43321 12
Q ss_pred HHHHHHHHH--HHCCCeEEEeCCchHHHhhchhhHH-hhhcCCCccEEecCHHHHHhhh
Q 026265 185 VIQAAIRIA--KQEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 185 ~~~~~~~~a--~~~g~~i~~D~~~~~~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
...+.++.. +..++++-|...+..- ..++..+. .+++ ++|-+=+|++|...+.
T Consensus 250 r~~~~i~~L~~~~~~i~iH~E~As~~~-~~ir~~i~~~ilp--~vDSlGmNE~ELa~l~ 305 (463)
T PRK03979 250 RAKEDIKLLKKKNKDIKIHVEFASIQN-REIRKKIITYILP--HVDSVGMDETEIANIL 305 (463)
T ss_pred HHHHHHHHHhhCCCCceEEEEeccccC-HHHHHHHHHhhcc--ccccccCCHHHHHHHH
Confidence 233333333 3347889998764421 13444544 4666 9999999999988653
No 76
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=95.47 E-value=0.73 Score=41.25 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=88.2
Q ss_pred CceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCce------------------------eeceee
Q 026265 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD------------------------VSRLRM 128 (241)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd------------------------~~~~~~ 128 (241)
....+.||.+.-.|..++...|.+| ++.++.. .+...+.+...+|- .+++..
T Consensus 104 ~~~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~E 179 (453)
T PRK14038 104 WDELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIYE 179 (453)
T ss_pred cceEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEEE
Confidence 3469999999999999972355665 5555532 22222323332332 122221
Q ss_pred cCCCceeEEEEEcCCCCeeeeeCccccCCCC-cccCC---hhhhCCccEEEEE-ecccc-------HHHHHHHHHHHHHC
Q 026265 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQ-ADELI---AEDVKGSKWLVLR-FGMFN-------FEVIQAAIRIAKQE 196 (241)
Q Consensus 129 ~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~-~~~~~---~~~i~~~~~v~~~-~~~~~-------~~~~~~~~~~a~~~ 196 (241)
-+....+. -+.-|.-+|-++.+...+..+. .+++. .+...++|.+.++ +..+. .+.+.+.++..++.
T Consensus 180 y~~G~~~~-~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~ 258 (453)
T PRK14038 180 FPRGFRVF-DFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNER 258 (453)
T ss_pred eCCCCEEe-eeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcC
Confidence 11112222 2222334455554444333332 12222 2445789999999 44321 12333444444456
Q ss_pred CCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhh
Q 026265 197 GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 197 g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
++++-|.+.... -...++.+.++++ .+|-+-+|++|...+.
T Consensus 259 ~i~iH~EfAs~~-d~~~r~~i~~ilp--~vDSlGmNE~ELa~ll 299 (453)
T PRK14038 259 GIPAHLEFAFTP-DETVREEILGLLG--KFYSVGLNEVELASIM 299 (453)
T ss_pred CceEEEEeeccc-hHHHHHHHHhhCc--cccccccCHHHHHHHH
Confidence 888999886432 1246677778887 9999999999987664
No 77
>PTZ00344 pyridoxal kinase; Provisional
Probab=95.38 E-value=0.034 Score=47.15 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=42.2
Q ss_pred CccEEEEEeccccHHHHHH---HHHHHHHCC--CeEEEeCCchH-----HHhhchhhHHhhhcCCCccEEecCHHHHHhh
Q 026265 170 GSKWLVLRFGMFNFEVIQA---AIRIAKQEG--LSVSMDLASFE-----MVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~---~~~~a~~~g--~~i~~D~~~~~-----~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l 239 (241)
+.+++...+. -+.+.+.. +++.+++.+ +++++||.-.+ ..+...+.+.++++ ++|+++||+.|++.|
T Consensus 77 ~~~~v~sG~l-~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~--~~dii~pN~~E~~~L 153 (296)
T PTZ00344 77 DYTYVLTGYI-NSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIP--YADVITPNQFEASLL 153 (296)
T ss_pred cCCEEEECCC-CCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhh--hCCEEeCCHHHHHHH
Confidence 3455665543 24444444 444445555 47999954211 01234445666777 899999999999999
Q ss_pred hC
Q 026265 240 VR 241 (241)
Q Consensus 240 ~g 241 (241)
+|
T Consensus 154 ~g 155 (296)
T PTZ00344 154 SG 155 (296)
T ss_pred hC
Confidence 76
No 78
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=94.85 E-value=0.082 Score=47.43 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=76.7
Q ss_pred eeecCChHHHHHHHHHhhcCCcee-EEeeecCChhHHHHHHHHHhCCceeecee------------ecC-CCceeEEEEE
Q 026265 75 KTIAGGSVTNTIRGLSVGFGVPCG-LIGAYGDDQQGQLFVSNMQFSGVDVSRLR------------MKR-GPTGQCVCLV 140 (241)
Q Consensus 75 ~~~~GG~~~N~a~~la~~LG~~~~-~vg~vG~D~~g~~i~~~l~~~gvd~~~~~------------~~~-~~T~~~~~~~ 140 (241)
..+.||.+.-.|..+| .++.... +.++++. +.+.+.| ..+|-+--+. ..+ ...-.-+|+-
T Consensus 91 ~~r~GGnA~imAn~la-~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlE 164 (444)
T PF04587_consen 91 EERMGGNAGIMANRLA-NLEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILE 164 (444)
T ss_dssp EEEEESHHHHHHHHHC-CTT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEE
T ss_pred ccccCchHHHHHHHHH-hCCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEE
Confidence 3469999999999998 7865544 4444653 4556666 3344221000 000 1222222222
Q ss_pred cCCC-----------CeeeeeCccccCCCCc-ccCC---hhhhCCccEEEEE-ecccc------------HHHHHHHHHH
Q 026265 141 DASG-----------NRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN------------FEVIQAAIRI 192 (241)
Q Consensus 141 ~~~g-----------~r~~~~~~g~~~~l~~-~~~~---~~~i~~~~~v~~~-~~~~~------------~~~~~~~~~~ 192 (241)
=+.| +|-++.+...+..+.. +++. .+...++|.+.++ +.++. .+.+.+.++.
T Consensus 165 y~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~ 244 (444)
T PF04587_consen 165 YKKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKL 244 (444)
T ss_dssp E-TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHH
T ss_pred cCCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHh
Confidence 1233 3444433333333332 2221 2345679999999 43321 1223333334
Q ss_pred HH-HCCCeEEEeCCchHHHhhchhhHH-hhhcCCCccEEecCHHHHHhhh
Q 026265 193 AK-QEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 193 a~-~~g~~i~~D~~~~~~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
.+ ..+++|-|.+.+..- ..++..+. .+++ ++|-+=+|++|...|+
T Consensus 245 l~~~~~~~iH~E~As~~d-~~l~~~i~~~ilp--~vDSlGmNEqEL~~l~ 291 (444)
T PF04587_consen 245 LKSNPDIPIHLELASFAD-EELRKEILEKILP--HVDSLGMNEQELANLL 291 (444)
T ss_dssp HH-HTT-EEEEE----SS-HHHHHHHHHHHGG--GSSEEEEEHHHHHHHH
T ss_pred ccCCCCCceEEEeccccC-HHHHHHHHHHhhc--cccccccCHHHHHHHH
Confidence 44 578999998865421 13455544 6777 9999999999988763
No 79
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=94.83 E-value=0.078 Score=44.21 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=49.9
Q ss_pred hhhCCccEEEEEecccc---HHHHHHHHHHHHHCCC--eEEEeCC--chH---HHhhchhhHH-hhhcCCCccEEecCHH
Q 026265 166 EDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGL--SVSMDLA--SFE---MVRNFRTPLL-QLLESGDVDLCFANED 234 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~~~---~~~~~~~~~~a~~~g~--~i~~D~~--~~~---~~~~~~~~l~-~~l~~~~~d~l~~N~~ 234 (241)
+.+..+|.++..|.. + ...+..+++..|+... .+++||- ... ...+....+. ++++ .+|++.||.-
T Consensus 69 ~~~~~~davltGYlg-s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip--~AdiiTPN~f 145 (281)
T COG2240 69 DKLGECDAVLTGYLG-SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLP--LADIITPNIF 145 (281)
T ss_pred ccccccCEEEEccCC-CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcc--hhhEeCCCHH
Confidence 467789999999643 3 3556677777777744 4888982 221 1123333333 4777 9999999999
Q ss_pred HHHhhhC
Q 026265 235 EAAELVR 241 (241)
Q Consensus 235 Ea~~l~g 241 (241)
|++.|+|
T Consensus 146 ELe~Ltg 152 (281)
T COG2240 146 ELEILTG 152 (281)
T ss_pred HHHHHhC
Confidence 9999987
No 80
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=94.23 E-value=1.1 Score=39.96 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=83.0
Q ss_pred eeecCChHHHHHHHHHhhcCCce--eEEeeecCChhHHHHHHHHHhC-Cceeec--------ee----ec-CCCceeEEE
Q 026265 75 KTIAGGSVTNTIRGLSVGFGVPC--GLIGAYGDDQQGQLFVSNMQFS-GVDVSR--------LR----MK-RGPTGQCVC 138 (241)
Q Consensus 75 ~~~~GG~~~N~a~~la~~LG~~~--~~vg~vG~D~~g~~i~~~l~~~-gvd~~~--------~~----~~-~~~T~~~~~ 138 (241)
..+.||.+.-+|..++ ++|..+ .+.+.++ +..++.|... +|-.-- .. .. ++++-.-+|
T Consensus 85 ~~rmGGqAgimAn~la-~lg~~~vI~~~~~ls-----~~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I 158 (446)
T TIGR02045 85 YERMGGQAGIISNLLG-RLGLKKVIAYTPFLS-----KRQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRI 158 (446)
T ss_pred eeeeCCHHHHHHHHHH-hcCCceEEEeCCCCC-----HHHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEE
Confidence 3689999999999999 899885 3333444 4444555443 121110 00 00 112222222
Q ss_pred E---------------EcCCCCeeeeeCccccCCCCc-ccC---ChhhhCCccEEEEE-ecccc------------HHHH
Q 026265 139 L---------------VDASGNRTMRPCLSNAVKIQA-DEL---IAEDVKGSKWLVLR-FGMFN------------FEVI 186 (241)
Q Consensus 139 ~---------------~~~~g~r~~~~~~g~~~~l~~-~~~---~~~~i~~~~~v~~~-~~~~~------------~~~~ 186 (241)
+ +-|.-+|-++.+...+..+.. +++ ..+.-..+|.+.++ +..+. .+..
T Consensus 159 ~Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~ 238 (446)
T TIGR02045 159 FEFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERA 238 (446)
T ss_pred EEeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHH
Confidence 2 223333444433332222211 111 12344678999999 43321 2233
Q ss_pred HHHHHHHHH-CCCeEEEeCCchHHHhhchhhHH-hhhcCCCccEEecCHHHHHhhh
Q 026265 187 QAAIRIAKQ-EGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 187 ~~~~~~a~~-~g~~i~~D~~~~~~~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
.+.++..++ .++++-|...+..- ..++..+. .+++ ++|-+-+|++|...+.
T Consensus 239 ~~~i~~L~~~~~i~iH~E~As~~~-~~l~~~i~~~ilp--~vDSlGMNE~ELa~ll 291 (446)
T TIGR02045 239 KEDIELLKKNKDLKIHVEFASIQN-REIRKKVVTNIFP--HVDSVGMDEAEIANVL 291 (446)
T ss_pred HHHHHHHhhCCCCeEEEEeccccc-HHHHHHHHHhhcc--ccccccCCHHHHHHHH
Confidence 444444433 67899998864421 13444444 4666 9999999999988764
No 81
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=93.86 E-value=0.18 Score=46.04 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=46.1
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCCe-EEEeCCchHH------HhhchhhHH-hhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASFEM------VRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~-i~~D~~~~~~------~~~~~~~l~-~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.+.+.+.+. .+.+.+..+++.+++.+.+ +++||.-... .+...+.+. ++++ ++|+++||..|++.|+|
T Consensus 78 ~~~aik~G~l-~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~--~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTGML-PSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLP--LATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhc--cCeEEcCCHHHHHHHhC
Confidence 3566776643 3577788888888888775 9999942110 001122233 4566 89999999999999875
No 82
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=92.90 E-value=0.24 Score=47.55 Aligned_cols=68 Identities=16% Similarity=0.034 Sum_probs=46.3
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHHC-CCeEEEeCCchHH------HhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 171 SKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFEM------VRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~-g~~i~~D~~~~~~------~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
.+.+-+.+. .+.+.+..+.+.+++. +.++++||..... .+...+.+.++++ .+|+++||..|++.|+|
T Consensus 311 ~~aiKiGmL-~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp--~adlItPN~~Ea~~L~g 385 (755)
T PRK09517 311 VDAVKLGML-GSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAV--HVDVVTPNIPELAVLCG 385 (755)
T ss_pred CCEEEECCC-CCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhC--cccCccCCHHHHHHHhC
Confidence 566767642 3567777778888774 5779999853210 0112233556777 99999999999999976
No 83
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=92.02 E-value=0.38 Score=44.29 Aligned_cols=69 Identities=20% Similarity=0.125 Sum_probs=42.8
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHC-CCeEEEeCCchH------HHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFE------MVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~-g~~i~~D~~~~~------~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
..+.+.+.+. .+.+.+..+.+..++. +.++++||.-.. ..+...+.+.++++ ++|+++||..|++.|+|
T Consensus 98 ~~~aikiG~l-~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~--~advItPN~~Ea~~Ltg 173 (530)
T PRK14713 98 TVDAVKIGML-GDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVP--RADLITPNLPELAVLLG 173 (530)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhh--hhheecCChHHHHHHhC
Confidence 3677777742 2444444444444443 346899995311 01123344566777 99999999999999976
No 84
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=91.22 E-value=0.66 Score=42.44 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=41.9
Q ss_pred hCCccE--EEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH-----HHh-----hchhhHH-hhhcCCCccEEecCHH
Q 026265 168 VKGSKW--LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE-----MVR-----NFRTPLL-QLLESGDVDLCFANED 234 (241)
Q Consensus 168 i~~~~~--v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~-----~~~-----~~~~~l~-~~l~~~~~d~l~~N~~ 234 (241)
+++.++ +.+++ +.+.+.+..+.+.++ +.++++||.... ... ...+.+. ++++ .+|+++||..
T Consensus 295 ~~d~~~~~Ik~G~-l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~--~advitPN~~ 369 (504)
T PTZ00347 295 MSDFNISVVKLGL-VPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFP--MATIITPNIP 369 (504)
T ss_pred HhCCCCCEEEECC-cCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccC--cceEEeCCHH
Confidence 444444 44443 235677777776665 678999974310 000 0111222 4566 8999999999
Q ss_pred HHHhhhC
Q 026265 235 EAAELVR 241 (241)
Q Consensus 235 Ea~~l~g 241 (241)
|++.|+|
T Consensus 370 Ea~~L~g 376 (504)
T PTZ00347 370 EAERILG 376 (504)
T ss_pred HHHHHhC
Confidence 9999976
No 85
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=89.70 E-value=1.3 Score=32.05 Aligned_cols=95 Identities=9% Similarity=0.104 Sum_probs=54.5
Q ss_pred Eeeec-CChhHHHHHHHHHhC-CceeeceeecCCCceeEEEEEcCCCCeeeeeCc--cccCCCCcccCChhhhCCccEEE
Q 026265 100 IGAYG-DDQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVKGSKWLV 175 (241)
Q Consensus 100 vg~vG-~D~~g~~i~~~l~~~-gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~--g~~~~l~~~~~~~~~i~~~~~v~ 175 (241)
++.+| +...|..+.+.|.+. .++...+...+. ..|++.-..++ .....+..++.+.+.+.+.|+++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----------SAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----------TTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred EEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----------ccCCeeehhccccccccceeEeecchhHhhcCCEEE
Confidence 45566 667899999999873 232222222211 02222111111 11112333334456678999999
Q ss_pred EEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
+. .+.....++...+.+.|+ .++|.++.+
T Consensus 72 ~a---~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 72 LA---LPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp E----SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred ec---CchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 98 356677888888888888 789998764
No 86
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=89.36 E-value=0.95 Score=38.84 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=38.8
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHHC------CCeEEEeCCchHHH-hh-ch-----hhH-HhhhcCCCccEEecCHHHH
Q 026265 171 SKWLVLRFGMFNFEVIQAAIRIAKQE------GLSVSMDLASFEMV-RN-FR-----TPL-LQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~------g~~i~~D~~~~~~~-~~-~~-----~~l-~~~l~~~~~d~l~~N~~Ea 236 (241)
.+.+=+.. +.+.+.+..+.+..++. ..++++||--.... .. .. +.+ ..+++ ++|+++||..|+
T Consensus 74 i~aIKiGm-L~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp--~a~viTPN~~Ea 150 (321)
T PTZ00493 74 IDVVKLGV-LYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICP--ISCIITPNFYEC 150 (321)
T ss_pred CCEEEECC-cCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhc--cCEEECCCHHHH
Confidence 45565652 12455555555555443 22489998411000 01 12 112 24777 999999999999
Q ss_pred HhhhC
Q 026265 237 AELVR 241 (241)
Q Consensus 237 ~~l~g 241 (241)
+.|+|
T Consensus 151 ~~L~g 155 (321)
T PTZ00493 151 KVILE 155 (321)
T ss_pred HHHhC
Confidence 99875
No 87
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=88.67 E-value=0.84 Score=37.85 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=47.3
Q ss_pred hhhCCccEEEEEecc--ccHHHHHHHHHHHHHCCC--eEEEeCC--ch---HHHhhchhhHHhhhcCCCccEEecCHHHH
Q 026265 166 EDVKGSKWLVLRFGM--FNFEVIQAAIRIAKQEGL--SVSMDLA--SF---EMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~--~~~~~~~~~~~~a~~~g~--~i~~D~~--~~---~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea 236 (241)
..+..++++...|.- .....+..+++..|+.+. .-++||- +. +..++.-+.+.+++. +.+|+++||+-|+
T Consensus 77 nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~-~ladiiTPNqFE~ 155 (308)
T KOG2599|consen 77 NNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLII-PLADIITPNQFEA 155 (308)
T ss_pred ccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhc-chhhhcCCcchhh
Confidence 345678999888642 124556666777776654 3446872 11 112233344555555 3799999999999
Q ss_pred HhhhC
Q 026265 237 AELVR 241 (241)
Q Consensus 237 ~~l~g 241 (241)
+.|+|
T Consensus 156 EiLtg 160 (308)
T KOG2599|consen 156 EILTG 160 (308)
T ss_pred hhhcC
Confidence 99987
No 88
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.94 E-value=18 Score=28.00 Aligned_cols=109 Identities=11% Similarity=0.148 Sum_probs=66.3
Q ss_pred ceeEEeeec--CChhHHHHHHHHHhCCceeeceeec---C-C-CceeEEEEEcCCCCeeeeeCcccc-CCC-----Cccc
Q 026265 96 PCGLIGAYG--DDQQGQLFVSNMQFSGVDVSRLRMK---R-G-PTGQCVCLVDASGNRTMRPCLSNA-VKI-----QADE 162 (241)
Q Consensus 96 ~~~~vg~vG--~D~~g~~i~~~l~~~gvd~~~~~~~---~-~-~T~~~~~~~~~~g~r~~~~~~g~~-~~l-----~~~~ 162 (241)
+...-|.-| ....-..+.+.|++.|..+..+... + + .+|+.++-++ .|++..+.+.+.. ... +.+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHH
Confidence 444455544 4456788999999998877765544 2 3 5676666654 6888877665431 111 1111
Q ss_pred CC-------hhhhCCccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 163 LI-------AEDVKGSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 163 ~~-------~~~i~~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+. ..+++.+|++.++ +-+ +....+.+.++..-+.+.++++-++
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEe
Confidence 11 1345678999999 322 2334566777777777887777765
No 89
>PRK10565 putative carbohydrate kinase; Provisional
Probab=83.16 E-value=4.1 Score=37.34 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=43.3
Q ss_pred hCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 168 i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
++.++.+.+.-.+...+....+++.+++.+.++++|+..-........ .. ...+++||..|+.+|+|
T Consensus 318 ~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-----~~--~~~VLTPh~gE~~rL~~ 384 (508)
T PRK10565 318 LEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLLAINPD-----KR--HNRVITPHPGEAARLLG 384 (508)
T ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-----cc--CCeEECCCHHHHHHHhC
Confidence 466788999832223233455567777788999999975432111110 11 35799999999999975
No 90
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=81.83 E-value=2.9 Score=34.58 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=50.1
Q ss_pred hhhhCCccEEEEEecc-cc---HHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhh
Q 026265 165 AEDVKGSKWLVLRFGM-FN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 165 ~~~i~~~~~v~~~~~~-~~---~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
...+++-..+++.-.+ .. ...+.++++.++++++++++|...-+.+.+..+.+..- + ..-+++||..|+.+|+
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~--~-~~viLTPNvvEFkRLc 172 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGG--Y-PKVILTPNVVEFKRLC 172 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhcc--C-ceeeeCCcHHHHHHHH
Confidence 3467788888888222 22 24567888899999999999997665333333322221 1 2368899999999986
Q ss_pred C
Q 026265 241 R 241 (241)
Q Consensus 241 g 241 (241)
+
T Consensus 173 d 173 (306)
T KOG3974|consen 173 D 173 (306)
T ss_pred H
Confidence 3
No 91
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=81.50 E-value=9.4 Score=30.74 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=43.8
Q ss_pred CccEEEEE-ecc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEE-----ecCHHHHHhhhC
Q 026265 170 GSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLC-----FANEDEAAELVR 241 (241)
Q Consensus 170 ~~~~v~~~-~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l-----~~N~~Ea~~l~g 241 (241)
...-|.++ ++. ..++.+.++++.+++.|+.+.+|.+... ..+.+.++++ .+|.+ .++.+..+.++|
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~----~~~~~~~l~~--~~D~~l~DiK~~d~~~~~~~tG 110 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDA----PASKLLPLAK--LCDEVLFDLKIMDATQARDVVK 110 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHH--hcCEEEEeeccCCHHHHHHHHC
Confidence 34678888 332 3467889999999999999999998653 1233445555 55554 445666666654
No 92
>PRK06444 prephenate dehydrogenase; Provisional
Probab=79.53 E-value=12 Score=29.68 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=18.1
Q ss_pred eeec-CChhHHHHHHHHHhCCcee
Q 026265 101 GAYG-DDQQGQLFVSNMQFSGVDV 123 (241)
Q Consensus 101 g~vG-~D~~g~~i~~~l~~~gvd~ 123 (241)
+.+| ....|+++...|++.|..+
T Consensus 4 ~iiG~~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 4 IIIGKNGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEecCCcHHHHHHHHHHhCCCEE
Confidence 3444 3678999999999999775
No 93
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=78.23 E-value=7.4 Score=33.70 Aligned_cols=162 Identities=22% Similarity=0.208 Sum_probs=80.2
Q ss_pred CCceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCcee--ec----eeecCC-CceeEEEEEcCCC
Q 026265 72 SPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDV--SR----LRMKRG-PTGQCVCLVDASG 144 (241)
Q Consensus 72 ~~~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~--~~----~~~~~~-~T~~~~~~~~~~g 144 (241)
++..+..||.+.=.|.-.. .-| .+.++|+.|.-...-.+=++.+-.|-.+ +. +..+.+ .-|-+ +-|..
T Consensus 136 ~R~~~~mGGNA~LMA~R~~-~~~-~~~LlG~~~~R~~~~L~P~~~R~~~~~I~~DdiHlILEYK~Gd~~G~~---VAP~a 210 (478)
T KOG4184|consen 136 ERINWYMGGNAPLMAVRFF-MEG-AQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLILEYKAGDKWGPY---VAPRA 210 (478)
T ss_pred hhhhhhccCCchHHHHHHH-hcc-ceeeecccccchhccccchhhhcccCcCcCCceEEEEEeccCCccccc---ccccc
Confidence 5778899999998888887 444 8899999997654443333333222110 00 001111 11111 11222
Q ss_pred CeeeeeCccccCCCCc-ccC-ChhhhCCccEEEEEe-cc---ccH----HHHHHHHHHHH--HCCCeEEEeCCchHHHhh
Q 026265 145 NRTMRPCLSNAVKIQA-DEL-IAEDVKGSKWLVLRF-GM---FNF----EVIQAAIRIAK--QEGLSVSMDLASFEMVRN 212 (241)
Q Consensus 145 ~r~~~~~~g~~~~l~~-~~~-~~~~i~~~~~v~~~~-~~---~~~----~~~~~~~~~a~--~~g~~i~~D~~~~~~~~~ 212 (241)
+|-+.....-+.++.. +.+ +.-..-+.|.+++++ .+ .+. +.++++.+... -.|+++-|.+.+.---.-
T Consensus 211 nR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~~~~l 290 (478)
T KOG4184|consen 211 NRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMTNREL 290 (478)
T ss_pred cceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHHHHHH
Confidence 2322222111111111 111 112345689999993 11 121 12222222222 247788888865421111
Q ss_pred chhhHHhhhcCCCccEEecCHHHHHhhh
Q 026265 213 FRTPLLQLLESGDVDLCFANEDEAAELV 240 (241)
Q Consensus 213 ~~~~l~~~l~~~~~d~l~~N~~Ea~~l~ 240 (241)
...-..++++ ++|=+=+|+.|..-|+
T Consensus 291 ~~~i~h~VlP--yVdSLGlNEQEL~fL~ 316 (478)
T KOG4184|consen 291 MSSIVHQVLP--YVDSLGLNEQELLFLT 316 (478)
T ss_pred HHHHHHHhhh--hccccCCCHHHHHHHH
Confidence 1222345777 9999999999987664
No 94
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=75.70 E-value=9.7 Score=29.58 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=44.7
Q ss_pred CccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHH
Q 026265 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 170 ~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea 236 (241)
+++++...+..++.+.+..+-+.++++|+.|+.||..+. +..|..+.+.++ .+-..|....++
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~G--ekIRk~i~~~vp--~~khafi~~~~a 84 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPG--EKIRKKIEQHLP--GYENCFIPKHLA 84 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCch--HHHHHHHHHHCC--CCeEEeeeHHhc
Confidence 477777774434767776666667778999999997654 467777777777 677777776664
No 95
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=74.71 E-value=33 Score=29.73 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=52.9
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCCceeecee--ecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccE
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR--MKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~--~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~ 173 (241)
++..+|.-| ..|..+++.|.+.+.....+. ...... |++.- ..+ ..+..+..+...+++.|+
T Consensus 6 ~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~~~a----------G~~l~--~~~--~~l~~~~~~~~~~~~vD~ 69 (336)
T PRK05671 6 DIAVVGATG--TVGEALVQILEERDFPVGTLHLLASSESA----------GHSVP--FAG--KNLRVREVDSFDFSQVQL 69 (336)
T ss_pred EEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECcccC----------CCeec--cCC--cceEEeeCChHHhcCCCE
Confidence 455666555 569999999996543222111 111111 32211 112 123333333333578899
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
+++. .+.+...+++..+.+.|++ ++|.++.+
T Consensus 70 vFla---~p~~~s~~~v~~~~~~G~~-VIDlS~~f 100 (336)
T PRK05671 70 AFFA---AGAAVSRSFAEKARAAGCS-VIDLSGAL 100 (336)
T ss_pred EEEc---CCHHHHHHHHHHHHHCCCe-EEECchhh
Confidence 8887 3556677788888888865 89998764
No 96
>PRK05968 hypothetical protein; Provisional
Probab=73.75 E-value=63 Score=28.43 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=26.9
Q ss_pred CCccEEEEEe---ccccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 169 KGSKWLVLRF---GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 169 ~~~~~v~~~~---~~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
.+.++|++.. .......+.++.+.+++.|+.+++|-.
T Consensus 146 ~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 146 PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 4567777771 123456778888889999999999974
No 97
>PRK08114 cystathionine beta-lyase; Provisional
Probab=72.64 E-value=46 Score=29.54 Aligned_cols=115 Identities=12% Similarity=0.040 Sum_probs=62.5
Q ss_pred HHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC-ceeEEeeecCChhH---HHHHHHHHhCCceeeceeec
Q 026265 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMK 129 (241)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~-~~~~vg~vG~D~~g---~~i~~~l~~~gvd~~~~~~~ 129 (241)
+..++.++.+++ .......+.|.++..+..++ .+.. +..++. ++.|| ..+.+.+++.||++.++...
T Consensus 65 ~~le~~la~LEg-----~~~a~~~~SGmaAi~~~~~~-ll~~GD~Vv~~---~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~ 135 (395)
T PRK08114 65 FSLQEAMCELEG-----GAGCALYPCGAAAVANAILA-FVEQGDHVLMT---GTAYEPTQDFCSKILSKLGVTTTWFDPL 135 (395)
T ss_pred HHHHHHHHHHhC-----CCeEEEEhHHHHHHHHHHHH-HcCCCCEEEEe---CCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 344555555543 23566777888888877776 5553 333333 33343 34446688888877654311
Q ss_pred CCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEE--ecc-ccHHHHHHHHHHHHHC--CCeEEEeC
Q 026265 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR--FGM-FNFEVIQAAIRIAKQE--GLSVSMDL 204 (241)
Q Consensus 130 ~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~--~~~-~~~~~~~~~~~~a~~~--g~~i~~D~ 204 (241)
|. +. ....++ .+.++|+++ .+. .....+.++.+.+++. |+.+++|-
T Consensus 136 -----------d~--~~-------l~~~l~---------~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDn 186 (395)
T PRK08114 136 -----------IG--AD-------IAKLIQ---------PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDN 186 (395)
T ss_pred -----------CH--HH-------HHHhcC---------CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEEC
Confidence 10 00 001111 135677777 221 1123356667777776 48999997
Q ss_pred Cc
Q 026265 205 AS 206 (241)
Q Consensus 205 ~~ 206 (241)
..
T Consensus 187 T~ 188 (395)
T PRK08114 187 TW 188 (395)
T ss_pred CC
Confidence 63
No 98
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=72.56 E-value=29 Score=30.50 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=54.7
Q ss_pred ceeEEeeecCChhHHHHHH-HHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccC-ChhhhCCccE
Q 026265 96 PCGLIGAYGDDQQGQLFVS-NMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADEL-IAEDVKGSKW 173 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~-~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~-~~~~i~~~~~ 173 (241)
+++++|.-| .-|+.+++ .|++..+....+...... ..|.+.. ...+. .....+. +.+.+++.|+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~---------~sg~~~~-~f~g~--~~~v~~~~~~~~~~~~Di 68 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTS---------QAGGAAP-SFGGK--EGTLQDAFDIDALKKLDI 68 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecch---------hhCCccc-ccCCC--cceEEecCChhHhcCCCE
Confidence 455666655 56888888 778777764333322110 1222221 11121 1111111 1234567899
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCCe-EEEeCCchH
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASFE 208 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~~-i~~D~~~~~ 208 (241)
+++. .+.+...++...+.+.|.+ +++|.++.+
T Consensus 69 vf~a---~~~~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 69 IITC---QGGDYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred EEEC---CCHHHHHHHHHHHHhCCCCeEEEECChHH
Confidence 8888 3556777888888888984 899998764
No 99
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=72.55 E-value=34 Score=29.80 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=56.3
Q ss_pred CCceeEEeeecCChhHHHHHHHHHh-CCceeeceeec--CCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCC
Q 026265 94 GVPCGLIGAYGDDQQGQLFVSNMQF-SGVDVSRLRMK--RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (241)
Q Consensus 94 G~~~~~vg~vG~D~~g~~i~~~l~~-~gvd~~~~~~~--~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~ 170 (241)
+.++.++|.-| .-|+.+++.|.+ ..+.+..+... ....|..+.+ .+. .+..+.++.+.+++
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~------------~~~--~l~v~~~~~~~~~~ 68 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF------------KGR--EIIIQEAKINSFEG 68 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee------------CCc--ceEEEeCCHHHhcC
Confidence 45667777766 569999999994 66764433221 1122222211 111 23333333344567
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
.|++++. .+.+...++...+.+.| .+++|.++.+
T Consensus 69 ~Divf~a---~~~~~s~~~~~~~~~~G-~~VID~Ss~f 102 (347)
T PRK06728 69 VDIAFFS---AGGEVSRQFVNQAVSSG-AIVIDNTSEY 102 (347)
T ss_pred CCEEEEC---CChHHHHHHHHHHHHCC-CEEEECchhh
Confidence 8998887 25566777777777777 4688998764
No 100
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=72.51 E-value=6 Score=32.54 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=41.6
Q ss_pred hhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
+.++++|.+.+.-.+...+...++++...+...++++|...-....... .... ..-+++|+.-|+.+|++
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL~~l~~~~----~~~~--~~~IlTPH~gE~~rL~~ 132 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADALNLLAENP----KKRN--APVILTPHPGEFARLLG 132 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHHHCHHHCC----CCSS--SCEEEE-BHHHHHHHHT
T ss_pred hhhccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHHHHHHhcc----ccCC--CCEEECCCHHHHHHHhC
Confidence 4578899999993222223334456655556778999996543111111 1222 67899999999999975
No 101
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=72.00 E-value=14 Score=30.68 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=46.4
Q ss_pred cCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCH
Q 026265 162 ELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANE 233 (241)
Q Consensus 162 ~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~ 233 (241)
++......++|++++.....+.+.+.++++.+++.|..+.+|++... ++.+.... .+|++-.|.
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~-------E~~~A~~~-gadiIgin~ 188 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEE-------ELERALKL-GAPLIGINN 188 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHH-------HHHHHHHc-CCCEEEECC
Confidence 34445567899999995545778899999999999999999997653 22233332 678887664
No 102
>PRK05967 cystathionine beta-lyase; Provisional
Probab=71.61 E-value=72 Score=28.31 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.2
Q ss_pred CccEEEEEe--c-cccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLRF--G-MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~~--~-~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++. + ......+.++.+.++++|+.+++|-.
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 467788882 1 13456688889999999999999975
No 103
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.71 E-value=14 Score=25.51 Aligned_cols=78 Identities=14% Similarity=0.264 Sum_probs=51.1
Q ss_pred eecC-ChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEEecc
Q 026265 102 AYGD-DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM 180 (241)
Q Consensus 102 ~vG~-D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~~~~ 180 (241)
.||. +..-..+++.+++.|...... + .+ +|... ....+ ...++++|+|.+-...
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h----g--------~~-~~~~~-----------~~~~l-~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH----G--------RD-GGDEK-----------KASRL-PSKIKKADLVIVFTDY 58 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE----e--------cC-CCCcc-----------chhHH-HHhcCCCCEEEEEeCC
Confidence 4554 556788888888888765433 1 01 11110 00011 2357789998888545
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEeC
Q 026265 181 FNFEVIQAAIRIAKQEGLSVSMDL 204 (241)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~i~~D~ 204 (241)
.+......+-+.|++.++++++--
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEEC
Confidence 688889999999999999999865
No 104
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=70.46 E-value=51 Score=28.57 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=52.7
Q ss_pred CceeEEeeecCChhHHHHHHHHHhC---CceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCc
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFS---GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~---gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~ 171 (241)
.++.++|.-| .-|+.+++.|.+. ..++..+ ..+...|..+.+- +. .+..+.++...+.+.
T Consensus 5 ~~vaIvGATG--~vG~ellrlL~~~~hP~~~l~~l-aS~~saG~~~~~~------------~~--~~~v~~~~~~~~~~~ 67 (336)
T PRK08040 5 WNIALLGATG--AVGEALLELLAERQFPVGELYAL-ASEESAGETLRFG------------GK--SVTVQDAAEFDWSQA 67 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhcCCCCceEEEEE-EccCcCCceEEEC------------Cc--ceEEEeCchhhccCC
Confidence 4566666655 5799999999983 2232222 1112233332211 11 122222222233578
Q ss_pred cEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 172 ~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
|++++. .+.+...++...+.+.|++ ++|.++.+
T Consensus 68 Dvvf~a---~p~~~s~~~~~~~~~~g~~-VIDlS~~f 100 (336)
T PRK08040 68 QLAFFV---AGREASAAYAEEATNAGCL-VIDSSGLF 100 (336)
T ss_pred CEEEEC---CCHHHHHHHHHHHHHCCCE-EEECChHh
Confidence 988888 3556777888888777764 89998765
No 105
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=70.45 E-value=55 Score=28.81 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCeEEEeCC
Q 026265 186 IQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 186 ~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++.+.+++.|+.+++|-.
T Consensus 165 l~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 46667777888888888874
No 106
>PRK07050 cystathionine beta-lyase; Provisional
Probab=69.30 E-value=79 Score=27.89 Aligned_cols=104 Identities=11% Similarity=-0.022 Sum_probs=55.7
Q ss_pred CCceeecCChHHHHHHHHHhhcCC-ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee
Q 026265 72 SPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 72 ~~~~~~~GG~~~N~a~~la~~LG~-~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~ 150 (241)
+......||..++.+...+ .++- +..++..-.=...-..+...++..|+++.++... +.
T Consensus 81 ~~~l~~~sgt~Ai~~~l~a-l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-------------~~------ 140 (394)
T PRK07050 81 RHALLQPSGLAAISLVYFG-LVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-------------IG------ 140 (394)
T ss_pred CeEEEeccHHHHHHHHHHH-HhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-------------CH------
Confidence 3566778888888877766 4542 3333332211111223334566667766543211 00
Q ss_pred CccccCCCCcccCChhhhCCccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 151 CLSNAVKIQADELIAEDVKGSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 151 ~~g~~~~l~~~~~~~~~i~~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+++....-.+.++|+++ .+. .+...+.++.+.++++|+.+++|-.
T Consensus 141 ----------~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 141 ----------AGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred ----------HHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 00110011245677766 211 2456677888888889999999875
No 107
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=68.72 E-value=44 Score=29.05 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=54.7
Q ss_pred cCCceeEEeeecCChhHHHHHHHHHhCCceeecee--ecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCC
Q 026265 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR--MKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (241)
Q Consensus 93 LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~--~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~ 170 (241)
-..++..+|.-| .-|..+++.|.+.+-....+. ......+..+.. .+ ..+..++++.+.+.+
T Consensus 6 ~~~kVaVvGAtG--~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~------------~~--~~~~v~~~~~~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTG--AVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF------------EG--RDYTVEELTEDSFDG 69 (344)
T ss_pred CCCeEEEEcCCC--hHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee------------cC--ceeEEEeCCHHHHcC
Confidence 456777777777 469999999987543221111 111112222111 11 112233333344578
Q ss_pred ccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 171 ~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
.|++++. .+.+...++...+.+.|+ .++|.++.+
T Consensus 70 ~D~vf~a---~p~~~s~~~~~~~~~~g~-~VIDlS~~f 103 (344)
T PLN02383 70 VDIALFS---AGGSISKKFGPIAVDKGA-VVVDNSSAF 103 (344)
T ss_pred CCEEEEC---CCcHHHHHHHHHHHhCCC-EEEECCchh
Confidence 9999887 244566777777777775 589998765
No 108
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=67.00 E-value=70 Score=28.76 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=61.2
Q ss_pred HHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC-ceeEEeeecCChhH---HHHHHHHHhCCceeeceeec
Q 026265 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRMK 129 (241)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~-~~~~vg~vG~D~~g---~~i~~~l~~~gvd~~~~~~~ 129 (241)
+..++.++.+.+. .......+|.+++.+..++ .++- +..++. ...|+ ..+...+++.|+++.++..
T Consensus 64 ~~lE~~la~leg~-----~~av~~~SG~aAi~~al~a-ll~~GD~VI~~---~~~Y~~T~~~~~~~l~~~Gi~v~~vd~- 133 (432)
T PRK06702 64 AAFEQKLAELEGG-----VGAVATASGQAAIMLAVLN-ICSSGDHLLCS---STVYGGTFNLFGVSLRKLGIDVTFFNP- 133 (432)
T ss_pred HHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHH-hcCCCCEEEEC---CCchHHHHHHHHHHHHHCCCEEEEECC-
Confidence 3344555544322 2456677888888877666 4542 222222 23344 4444556778886654421
Q ss_pred CCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEEeccccHH----HHHHHHHHHHHCCCeEEEeCC
Q 026265 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFE----VIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 130 ~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~~~~~~~~----~~~~~~~~a~~~g~~i~~D~~ 205 (241)
.++++.+....-++.+.|++... .++. .+.++.+.|+++|+.++.|-.
T Consensus 134 ---------------------------~~d~~~l~~~I~~~Tk~I~~e~p-gnP~~~v~Di~~I~~iA~~~gi~livD~T 185 (432)
T PRK06702 134 ---------------------------NLTADEIVALANDKTKLVYAESL-GNPAMNVLNFKEFSDAAKELEVPFIVDNT 185 (432)
T ss_pred ---------------------------CCCHHHHHHhCCcCCeEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEECC
Confidence 01222222111234566776621 1222 367778888899999999975
No 109
>PRK09028 cystathionine beta-lyase; Provisional
Probab=66.35 E-value=95 Score=27.52 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=26.8
Q ss_pred CccEEEEEe--cc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~~--~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++. +. .....+.++.+.++++|+.+++|-.
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t 184 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNT 184 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 577888882 21 2346678888999999999999975
No 110
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=64.54 E-value=40 Score=27.98 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=38.4
Q ss_pred CccEEEEEe-cc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 170 GSKWLVLRF-GM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 170 ~~~~v~~~~-~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
..+.|.+++ +. ...+.+.++++.+++.|..+.+|.+... .++.+.++++ .+|.+.
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~----~~~~~~~l~~--~~D~v~ 139 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFL----PPEALEELLP--LLDAVL 139 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCC----CHHHHHHHHh--hcCeEE
Confidence 678888884 32 2368889999999999999999998663 2223334444 555554
No 111
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=63.82 E-value=69 Score=27.73 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=53.2
Q ss_pred CceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCccc--CChhhhCCcc
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE--LIAEDVKGSK 172 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~--~~~~~i~~~~ 172 (241)
.++.++|.-|. -|+.+.+.|.+.+....-+.... .....|++..-+ .+.. +...+ .+....++.|
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~A--------S~rSaG~~~~~f-~~~~--~~v~~~~~~~~~~~~~D 68 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLA--------SARSAGKKYIEF-GGKS--IGVPEDAADEFVFSDVD 68 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEe--------cccccCCccccc-cCcc--ccCccccccccccccCC
Confidence 45677777775 59999999998755443222211 011123331111 1110 11111 2223445889
Q ss_pred EEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
+++++. +.+...++..++.+.| .+++|-++.
T Consensus 69 ivf~~a---g~~~s~~~~p~~~~~G-~~VIdnsSa 99 (334)
T COG0136 69 IVFFAA---GGSVSKEVEPKAAEAG-CVVIDNSSA 99 (334)
T ss_pred EEEEeC---chHHHHHHHHHHHHcC-CEEEeCCcc
Confidence 998882 2345577788888888 567777654
No 112
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=63.55 E-value=38 Score=25.50 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=41.1
Q ss_pred ccEEEEE-eccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHH
Q 026265 171 SKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (241)
Q Consensus 171 ~~~v~~~-~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~E 235 (241)
.+.|.++ ++ ...+.+.++++.+++.|..+.++.+.. +.+...++++ .+|+++....+
T Consensus 62 ~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~-----~~~~~~~il~--~iD~l~~g~y~ 119 (147)
T TIGR02826 62 ISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLE-----PKDIPLELVQ--HLDYLKTGRWI 119 (147)
T ss_pred CCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHH--hCCEEEEChHH
Confidence 3567777 67 566788899999999999999998632 2123345556 88999887643
No 113
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=63.28 E-value=21 Score=23.33 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCCceeEEeeec------CChhHHHHHHHHHhCCceeec
Q 026265 82 VTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVSR 125 (241)
Q Consensus 82 ~~N~a~~la~~LG~~~~~vg~vG------~D~~g~~i~~~l~~~gvd~~~ 125 (241)
+.=.|..++ ++|.++.++-.-. +....+.+.+.|++.||++..
T Consensus 11 g~E~A~~l~-~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 11 GIELAEALA-ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHH-HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHH-HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 555778888 7999999987543 234678899999999998764
No 114
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=59.95 E-value=96 Score=26.61 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=47.9
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCC-ceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEE
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSG-VDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~g-vd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v 174 (241)
++.++|.-| .-|..+++.|.+.. +.+..+. ...+. .+ ........+.|++
T Consensus 4 ~VaIvGAtG--y~G~eLlrlL~~hp~~~l~~~~-------------s~~~~-----------~~---~~~~~~~~~~Dvv 54 (313)
T PRK11863 4 KVFIDGEAG--TTGLQIRERLAGRSDIELLSIP-------------EAKRK-----------DA---AARRELLNAADVA 54 (313)
T ss_pred EEEEECCCC--HHHHHHHHHHhcCCCeEEEEEe-------------cCCCC-----------cc---cCchhhhcCCCEE
Confidence 456666665 56999999998775 2111111 11111 00 1112234578988
Q ss_pred EEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
++. .|.+...++...+.+.|++ ++|+|..+
T Consensus 55 Fla---lp~~~s~~~~~~~~~~g~~-VIDlSadf 84 (313)
T PRK11863 55 ILC---LPDDAAREAVALIDNPATR-VIDASTAH 84 (313)
T ss_pred EEC---CCHHHHHHHHHHHHhCCCE-EEECChhh
Confidence 887 3666777777777777764 88998764
No 115
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=58.92 E-value=1.1e+02 Score=26.50 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=22.4
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. .....+.++.+.+++.|+.+++|-.
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45667766 111 1112255677778888999999875
No 116
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=57.70 E-value=1.2e+02 Score=27.21 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=24.1
Q ss_pred CccEEEEE-ecc--ccHHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 170 GSKWLVLR-FGM--FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 170 ~~~~v~~~-~~~--~~~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
+.++|++. ... .....+.++.+.+++.|+.+++|-..
T Consensus 149 ~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 46677776 211 01133667788888999999999753
No 117
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=57.53 E-value=35 Score=28.82 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=40.9
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCC-CeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHhhhC
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g-~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~l~g 241 (241)
..+++|.+.+...+-..+...++++..-+.. .++++|...-... ........ ..--+++|+.-|+++|+|
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~l----a~~~~~~~-~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLL----AELPDLLD-ERKVVLTPHPGEFARLLG 168 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHH----HhCccccc-CCcEEECCCHHHHHHhcC
Confidence 4578999999932222233334444444444 8999999754211 11111221 133889999999999875
No 118
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=56.79 E-value=49 Score=26.70 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=33.9
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
.-..+||+.+.+. .+.+++...++.+++.|..+.+|+-..
T Consensus 77 ~~aGAd~~tV~g~-A~~~TI~~~i~~A~~~~~~v~iDl~~~ 116 (217)
T COG0269 77 FEAGADWVTVLGA-ADDATIKKAIKVAKEYGKEVQIDLIGV 116 (217)
T ss_pred HHcCCCEEEEEec-CCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 4568999999964 378899999999999999999998544
No 119
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=55.79 E-value=1.5e+02 Score=26.29 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=22.1
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. .....+.++.+.+++.|+.+++|-.
T Consensus 155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677765 211 1112356667778888888888865
No 120
>PRK07582 cystathionine gamma-lyase; Validated
Probab=55.00 E-value=1.2e+02 Score=26.36 Aligned_cols=55 Identities=16% Similarity=-0.022 Sum_probs=29.8
Q ss_pred CceeecCChHHHHHHHHHhhcCC-ceeEEeeecCChhHHHHHHHHHhCCceeeceee
Q 026265 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128 (241)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~LG~-~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~ 128 (241)
+.....+|..++.+...+ .++- +..++..-+-..+.......+++.|+.+..+..
T Consensus 67 ~~v~~~sG~~Ai~~~l~a-ll~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 67 EALVFPSGMAAITAVLRA-LLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred CEEEECCHHHHHHHHHHH-hcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 566677777776666555 4542 333333222212223344567778887766553
No 121
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=54.83 E-value=87 Score=26.97 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=52.1
Q ss_pred CceeEEeeecCChhHHHHHHHHHhCCce---eeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCc
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVD---VSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~gvd---~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~ 171 (241)
.++.++|.-| .-|..+.+.|.+.+-. +..+... ...+..+.+ .|.. +. ..++....+++.
T Consensus 2 ~~V~IvGAtG--~vG~~l~~lL~~~~hp~~~l~~l~s~-~~~g~~l~~---~g~~-i~----------v~d~~~~~~~~v 64 (334)
T PRK14874 2 YNVAVVGATG--AVGREMLNILEERNFPVDKLRLLASA-RSAGKELSF---KGKE-LK----------VEDLTTFDFSGV 64 (334)
T ss_pred CEEEEECCCC--HHHHHHHHHHHhCCCCcceEEEEEcc-ccCCCeeee---CCce-eE----------EeeCCHHHHcCC
Confidence 4566677666 4699999999885433 2333222 122222221 1211 11 112222234678
Q ss_pred cEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 172 ~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
|++++. .+.....++...+.+.|+ +++|+++.+
T Consensus 65 DvVf~A---~g~g~s~~~~~~~~~~G~-~VIDlS~~~ 97 (334)
T PRK14874 65 DIALFS---AGGSVSKKYAPKAAAAGA-VVIDNSSAF 97 (334)
T ss_pred CEEEEC---CChHHHHHHHHHHHhCCC-EEEECCchh
Confidence 998887 244556666777767787 799998764
No 122
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=54.09 E-value=1.2e+02 Score=26.71 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=22.3
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. ...-.+.++.+.+++.|+.+++|-.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t 187 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNT 187 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 45677775 211 1111245677778888999999875
No 123
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=53.87 E-value=1.7e+02 Score=26.31 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=22.1
Q ss_pred CccEEEEE-e-cc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR-F-GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~-~-~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|++. . +. .....+.++.+.+++.|+.+++|-.
T Consensus 149 ~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t 187 (431)
T PRK08248 149 KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187 (431)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCC
Confidence 45677776 1 11 0112245677778888888888865
No 124
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=53.49 E-value=30 Score=28.67 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=46.7
Q ss_pred cccCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHH
Q 026265 160 ADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234 (241)
Q Consensus 160 ~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~ 234 (241)
+-++......++|.|.+-..+++.+.+.++++.+++.|....+.++.. +++...+.. .++++-.|-.
T Consensus 121 ~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~-------~El~~al~~-~a~iiGINnR 187 (254)
T PF00218_consen 121 PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNE-------EELERALEA-GADIIGINNR 187 (254)
T ss_dssp HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSH-------HHHHHHHHT-T-SEEEEESB
T ss_pred HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCH-------HHHHHHHHc-CCCEEEEeCc
Confidence 334445667899999999665688889999999999999999999765 334444432 6677766643
No 125
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=53.31 E-value=68 Score=28.33 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=54.9
Q ss_pred CceeEEeeecCChhHHHHHHHHHhC-CceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccE
Q 026265 95 VPCGLIGAYGDDQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (241)
Q Consensus 95 ~~~~~vg~vG~D~~g~~i~~~l~~~-gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~ 173 (241)
.++.++|.-| ..|..+.+.|.+. ++++..+... ...+..+.... ..+. .+ ...+.++++...+++.|+
T Consensus 39 ~kVaIvGATG--~vG~eLlrlL~~hP~~el~~l~s~-~saG~~i~~~~----~~l~--~~--~~~~~~~~~~~~~~~~Dv 107 (381)
T PLN02968 39 KRIFVLGASG--YTGAEVRRLLANHPDFEITVMTAD-RKAGQSFGSVF----PHLI--TQ--DLPNLVAVKDADFSDVDA 107 (381)
T ss_pred cEEEEECCCC--hHHHHHHHHHHhCCCCeEEEEECh-hhcCCCchhhC----cccc--Cc--cccceecCCHHHhcCCCE
Confidence 4677777777 4699999999887 4554444332 11221111110 0000 01 111223344344678999
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
+++. ++.+...+++..+ +.| ..++|.++.+
T Consensus 108 Vf~A---lp~~~s~~i~~~~-~~g-~~VIDlSs~f 137 (381)
T PLN02968 108 VFCC---LPHGTTQEIIKAL-PKD-LKIVDLSADF 137 (381)
T ss_pred EEEc---CCHHHHHHHHHHH-hCC-CEEEEcCchh
Confidence 9998 3556667777765 456 5688998775
No 126
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=52.69 E-value=1.7e+02 Score=26.32 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHCCCeEEEeCCc
Q 026265 185 VIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 185 ~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
.+.++.+.+++.|+.+++|-..
T Consensus 173 di~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 173 DIPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred CHHHHHHHHHHcCCeEEEECCC
Confidence 3566677788889999999763
No 127
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=52.55 E-value=35 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=21.9
Q ss_pred EEEEEeccccHHHHHHHHHHHHHCCCeEEEe
Q 026265 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD 203 (241)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D 203 (241)
++++++++ |.+.+.++++.+++.|.+++|-
T Consensus 2 ~vFvS~SM-P~~~Lk~l~~~a~~~g~~~VlR 31 (130)
T TIGR02742 2 MVFVSFSM-PEPLLKQLLDQAEALGAPLVIR 31 (130)
T ss_pred EEEEEcCC-CHHHHHHHHHHHHHhCCeEEEe
Confidence 35566553 7788888888888888888775
No 128
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=52.36 E-value=1.1e+02 Score=26.37 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=50.7
Q ss_pred eeEEeeecCChhHHHHHHHHHhCC-ceeeceeecCCCceeEEEEEcCCCCeeeeeCccc---cCCCCcccCChhhhCCcc
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSG-VDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSN---AVKIQADELIAEDVKGSK 172 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~g-vd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~---~~~l~~~~~~~~~i~~~~ 172 (241)
+.++|.- ...|..+.+.|.+.. +++..+...+...+..+..+.+ +..+.+. ...+..+.++.+...+.|
T Consensus 3 VaIvGat--G~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D 75 (341)
T TIGR00978 3 VAVLGAT--GLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVK-----WIEPGDMPEYVRDLPIVEPEPVASKDVD 75 (341)
T ss_pred EEEECCC--CHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhcc-----ccccCCCccccceeEEEeCCHHHhccCC
Confidence 3444443 457999999887754 6665553332111111110000 0000000 011111222333457789
Q ss_pred EEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
++++. .+.....++...+.+.|++ ++|.++.+
T Consensus 76 vVf~a---~p~~~s~~~~~~~~~~G~~-VIDlsg~f 107 (341)
T TIGR00978 76 IVFSA---LPSEVAEEVEPKLAEAGKP-VFSNASNH 107 (341)
T ss_pred EEEEe---CCHHHHHHHHHHHHHCCCE-EEECChhh
Confidence 88887 3555666666777778877 58887653
No 129
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=52.02 E-value=1.7e+02 Score=25.79 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=22.4
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
+.++|+++ .+. .....+.++.+.+++.|+.+++|-..
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~ 183 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTF 183 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 45677766 221 11123556677778888888888753
No 130
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=52.02 E-value=1.6e+02 Score=25.56 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=25.0
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|++. .+. .....+.++.+.+++.|+.+++|-.
T Consensus 136 ~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 136 NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 46777775 221 2345677888888888998888864
No 131
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=51.54 E-value=30 Score=24.71 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCCeEEEe
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMD 203 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D 203 (241)
++++++ .|.+.++++++.+.+.|..++|-
T Consensus 2 iFvS~S-MP~~~L~~l~~~a~~~~~~~V~R 30 (113)
T PF09673_consen 2 IFVSFS-MPDASLRNLLKQAERAGVVVVFR 30 (113)
T ss_pred EEEECC-CCHHHHHHHHHHHHhCCcEEEEE
Confidence 455655 37778888888888888887775
No 132
>PRK07324 transaminase; Validated
Probab=51.39 E-value=1.6e+02 Score=25.49 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=24.4
Q ss_pred CccEEEEE--ec----cccHHHHHHHHHHHHHCCCeEEEeC
Q 026265 170 GSKWLVLR--FG----MFNFEVIQAAIRIAKQEGLSVSMDL 204 (241)
Q Consensus 170 ~~~~v~~~--~~----~~~~~~~~~~~~~a~~~g~~i~~D~ 204 (241)
+.+++++. .+ ..+.+.+.++++.++++++.++.|-
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 46677776 11 1356667888888888888888885
No 133
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=50.70 E-value=82 Score=21.84 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=35.8
Q ss_pred hCCccEEEEE-ecccc--HHHHHHHHHHHHHCC---CeEEEeCCchHHHhhchhhHHhhhcCCCccEEec
Q 026265 168 VKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEG---LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 168 i~~~~~v~~~-~~~~~--~~~~~~~~~~a~~~g---~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
.+++|++.++ ..+.. .+.....+..+++.+ .++++----+ +...+.+.+..+ .+|++++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~a---q~~~~~l~~~~p--~vd~v~G 98 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMA---QRYGEELKKEFP--EVDLVVG 98 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCcc---ccChHHHHhhCC--CeEEEeC
Confidence 4689999999 54422 333444455555544 6666643222 356677877776 8898864
No 134
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=50.10 E-value=1.8e+02 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=21.6
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. .....+.++.+.+++.|+.+++|-.
T Consensus 139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 35666665 111 1122356666777888888888875
No 135
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=50.00 E-value=1.8e+02 Score=25.53 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=61.9
Q ss_pred HHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCC-ceeEEeeecCChhHHH---HHHHHHhCCceeeceeec
Q 026265 54 EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQL---FVSNMQFSGVDVSRLRMK 129 (241)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~-~~~~vg~vG~D~~g~~---i~~~l~~~gvd~~~~~~~ 129 (241)
...++.++.+.+ ........+|.+++.+...+ .++- +..++. +..|+.. +...++..|+++..+.
T Consensus 53 ~~lE~~lA~l~g-----~~~~~~~~sG~~Ai~~al~a-ll~~GD~Vl~~---~~~y~~t~~~~~~~~~~~gi~v~~~d-- 121 (377)
T TIGR01324 53 FALQDAMCELEG-----GAGCYLYPSGLAAVTNSILA-FVKAGDHVLMV---DSAYEPTRYFCDIVLKRMGVDITYYD-- 121 (377)
T ss_pred HHHHHHHHHHhC-----CCcEEEECcHHHHHHHHHHH-hcCCCCEEEEc---CCCcHHHHHHHHHHHHhcCcEEEEEC--
Confidence 344555555433 23677788999988887776 4553 333332 2334322 2234566666553221
Q ss_pred CCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 130 RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 130 ~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
.... +.+....-++.++|+++ .+. .....+.++.+.++++|+.+++|-.
T Consensus 122 ------------~~~~---------------e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t 173 (377)
T TIGR01324 122 ------------PLIG---------------EDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173 (377)
T ss_pred ------------CCCH---------------HHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 1000 11111111246777777 221 2355677888889999999999975
No 136
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=49.95 E-value=1.4e+02 Score=25.77 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=49.5
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceee--cCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~--~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v 174 (241)
+.++|.-| .-|..+.+.|.+.+-....+.. .....+..+.+ .|. .+...+++.+.+.+.|++
T Consensus 2 VaIvGAtG--~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~---~~~-----------~~~~~~~~~~~~~~~D~v 65 (339)
T TIGR01296 2 VAIVGATG--AVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF---KGK-----------ELEVNEAKIESFEGIDIA 65 (339)
T ss_pred EEEEcCCC--HHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee---CCe-----------eEEEEeCChHHhcCCCEE
Confidence 34455544 5699999999886544332221 11112222211 111 111112223345788998
Q ss_pred EEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
++.. +.....++...+.+.|+ +++|.++.+
T Consensus 66 ~~a~---g~~~s~~~a~~~~~~G~-~VID~ss~~ 95 (339)
T TIGR01296 66 LFSA---GGSVSKEFAPKAAKCGA-IVIDNTSAF 95 (339)
T ss_pred EECC---CHHHHHHHHHHHHHCCC-EEEECCHHH
Confidence 8882 33455666777777787 599998754
No 137
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=49.25 E-value=27 Score=28.46 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=33.9
Q ss_pred hhhCCccEEEEEecc-ccHHHHHHHHHHHH-HCCCeEEEeCCchH
Q 026265 166 EDVKGSKWLVLRFGM-FNFEVIQAAIRIAK-QEGLSVSMDLASFE 208 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~-~~~~~~~~~~~~a~-~~g~~i~~D~~~~~ 208 (241)
....+.|.+.+.++. ...+.+.++++..+ +.+.++++-|++..
T Consensus 37 ~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 37 AAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred HHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 345679999999654 45677888888888 78999999998764
No 138
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=48.72 E-value=51 Score=27.25 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=48.4
Q ss_pred CcccCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHH
Q 026265 159 QADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (241)
Q Consensus 159 ~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~E 235 (241)
++.++.....-++|.+.+-...++.+.+.++++.+++.|....+.++.. +++...+.. .++++-.|-..
T Consensus 113 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~-------~El~~a~~~-ga~iiGINnRd 181 (247)
T PRK13957 113 DEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTE-------DEAKLALDC-GAEIIGINTRD 181 (247)
T ss_pred CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCH-------HHHHHHHhC-CCCEEEEeCCC
Confidence 3334444566789999988555677889999999999999999999755 334433332 56666666443
No 139
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=47.30 E-value=88 Score=24.53 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=37.7
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeC-CchHHHhhchhhHHhhhcCCCccEEecC
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL-ASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~-~~~~~~~~~~~~l~~~l~~~~~d~l~~N 232 (241)
.-.++|++.+.+.. +.....++++.+++.|.++.+++ ++. ...+........ .+|++..+
T Consensus 73 ~~~Gad~i~vh~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~----t~~~~~~~~~~~-g~d~v~~~ 133 (206)
T TIGR03128 73 FAAGADIVTVLGVA-DDATIKGAVKAAKKHGKEVQVDLINVK----DKVKRAKELKEL-GADYIGVH 133 (206)
T ss_pred HHcCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEecCCC----ChHHHHHHHHHc-CCCEEEEc
Confidence 34578888877542 44556788899999999999885 432 111223333331 67888764
No 140
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=45.55 E-value=52 Score=22.32 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceee
Q 026265 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (241)
Q Consensus 79 GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~ 124 (241)
+|.+...+..+. ..|.++.+.+.+|.. ..+.|++.||.+-
T Consensus 47 ~~~~~~~~~~l~-~~~v~~vi~~~iG~~-----a~~~l~~~gI~v~ 86 (102)
T cd00562 47 GGEGKLAARLLA-LEGCDAVLVGGIGGP-----AAAKLEAAGIKPI 86 (102)
T ss_pred CccchHHHHHHH-HCCCcEEEEcccCcc-----HHHHHHHcCCEEE
Confidence 466778888898 799999999988865 5677888899763
No 141
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=45.30 E-value=1.9e+02 Score=24.88 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=27.6
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
..++.|++++. .|.+...++...+.+.|++ ++|+|..+
T Consensus 46 ~~~~~D~vFla---lp~~~s~~~~~~~~~~g~~-VIDlSadf 83 (310)
T TIGR01851 46 LLNAADVAILC---LPDDAAREAVSLVDNPNTC-IIDASTAY 83 (310)
T ss_pred hhcCCCEEEEC---CCHHHHHHHHHHHHhCCCE-EEECChHH
Confidence 44678988887 3556677777777777765 88998764
No 142
>PRK13018 cell division protein FtsZ; Provisional
Probab=44.99 E-value=89 Score=27.60 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=54.6
Q ss_pred ceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCcc
Q 026265 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLS 153 (241)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g 153 (241)
.-.-.||+|.|+.-.+. +.|..-.=+-.+-+|. +.|.....+.. +...+..|.- ....+++.. |
T Consensus 32 ~ViGvGGaG~N~v~~m~-~~~~~~v~~iaiNTD~------q~L~~~~a~~k-i~iG~~~t~G----~GaG~dp~~----G 95 (378)
T PRK13018 32 VVVGCGGAGNNTINRLY-EIGIEGAETIAINTDA------QHLAMIKADKK-ILIGKSLTRG----LGAGGDPEV----G 95 (378)
T ss_pred EEEEeCCcHHHHHHHHH-HcCCCCceEEEEECCH------HHHhcCCCCcE-EecCCccCCC----CCCCCChHH----H
Confidence 44567999999999998 7886643344456664 44544333211 1111110000 001122111 1
Q ss_pred ccC-CCCcccCChhhhCCccEEEEEecc---ccHHHHHHHHHHHHHCCCeEE
Q 026265 154 NAV-KIQADELIAEDVKGSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVS 201 (241)
Q Consensus 154 ~~~-~l~~~~~~~~~i~~~~~v~~~~~~---~~~~~~~~~~~~a~~~g~~i~ 201 (241)
... .-..+++ .+.++++|.|++...+ .......-+++.+++.+..++
T Consensus 96 ~~aaee~~d~I-~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv 146 (378)
T PRK13018 96 RKAAEESRDEI-KEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVV 146 (378)
T ss_pred HHHHHHHHHHH-HHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeE
Confidence 000 0011112 3467899998888332 123344556677788776533
No 143
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=44.82 E-value=58 Score=26.68 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=54.6
Q ss_pred EEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeee-----------eeCccccCCCCcccCChhh
Q 026265 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM-----------RPCLSNAVKIQADELIAED 167 (241)
Q Consensus 99 ~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~-----------~~~~g~~~~l~~~~~~~~~ 167 (241)
.+|.+|-...|..+.+.++..-++.+.+...+..--.+.-+...-+.|.. +....+..+--.+......
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L 81 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPKIL 81 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHHHH
Confidence 36788889999999999987645554444332111111000000011110 0000000000000111123
Q ss_pred hCCccEEEEE-eccccHHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 168 VKGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 168 i~~~~~v~~~-~~~~~~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
.+..|++.++ +.+..+.....+.+.++..|.++.+=.+.
T Consensus 82 ~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGA 121 (255)
T COG1712 82 KAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGA 121 (255)
T ss_pred hcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCcc
Confidence 4558999999 66555666666777788888888775543
No 144
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=43.61 E-value=71 Score=25.74 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=39.2
Q ss_pred CccccCCCCcccCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCC--CeEEEeCCchHHHhhchhhHHhhhcCCCccE
Q 026265 151 CLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDL 228 (241)
Q Consensus 151 ~~g~~~~l~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g--~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~ 228 (241)
|.|++.--|.+|+. +.+.+..+..+.+ ++..+.+++..++++. +++.-|.+.+ ..+..+.+ .+|+
T Consensus 82 YLGAasGTTvSHVS-DIv~~G~iYaVEf---s~R~~reLl~~a~~R~Ni~PIL~DA~~P-------~~Y~~~Ve--~VDv 148 (231)
T COG1889 82 YLGAASGTTVSHVS-DIVGEGRIYAVEF---SPRPMRELLDVAEKRPNIIPILEDARKP-------EKYRHLVE--KVDV 148 (231)
T ss_pred EeeccCCCcHhHHH-hccCCCcEEEEEe---cchhHHHHHHHHHhCCCceeeecccCCc-------HHhhhhcc--cccE
Confidence 45665555566654 2334444545554 4567778888777653 5777788544 34445555 6666
Q ss_pred Eec
Q 026265 229 CFA 231 (241)
Q Consensus 229 l~~ 231 (241)
++.
T Consensus 149 iy~ 151 (231)
T COG1889 149 IYQ 151 (231)
T ss_pred EEE
Confidence 653
No 145
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=42.16 E-value=54 Score=26.25 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=26.0
Q ss_pred cEEEEEeccccHHHHHHHHHHHHHCCCeEEEeC
Q 026265 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (241)
Q Consensus 172 ~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~ 204 (241)
=+++++++ .|.+.+.+++..+++.|+++++--
T Consensus 92 ~~vFVSfS-MP~~sLk~Ll~qa~~~G~p~VlRG 123 (212)
T PRK13730 92 ALYFVSFS-IPEEGLKRMLGETRHYGIPATLRG 123 (212)
T ss_pred eEEEEEcC-CCHHHHHHHHHHHHHhCCcEEEeC
Confidence 34555576 499999999999999999999863
No 146
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=42.09 E-value=61 Score=28.84 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.4
Q ss_pred CCCcccCChhhhCCccEEEEE--ec----cccHHHHHHHHHHHHHCCCeEEEeC
Q 026265 157 KIQADELIAEDVKGSKWLVLR--FG----MFNFEVIQAAIRIAKQEGLSVSMDL 204 (241)
Q Consensus 157 ~l~~~~~~~~~i~~~~~v~~~--~~----~~~~~~~~~~~~~a~~~g~~i~~D~ 204 (241)
.+++++++...-++.+++.+. .+ +.+++.+.++.+.|+++|..++.|=
T Consensus 159 ~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 159 TLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred cCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 455555555566789999988 22 2578889999999999998888875
No 147
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=42.06 E-value=1.6e+02 Score=25.87 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=54.2
Q ss_pred ceeEEeeecCChhHHHHHHHHH-hCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCCh-hhhCCccE
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQ-FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-EDVKGSKW 173 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~-~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~-~~i~~~~~ 173 (241)
++.++|..| .-|+.+++.|. +.......+..... - ..+.+... +.+. ....+++.. +.+++.|+
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss--------~-~s~g~~~~-f~~~--~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFST--------S-QLGQAAPS-FGGT--TGTLQDAFDIDALKALDI 67 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEc--------h-hhCCCcCC-CCCC--cceEEcCcccccccCCCE
Confidence 456666666 46999999888 54554332221110 0 11111111 1111 122223322 24568899
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCC-eEEEeCCchH
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFE 208 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~-~i~~D~~~~~ 208 (241)
++++. +.+...++...+.+.|. .+++|-++.+
T Consensus 68 vffa~---g~~~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 68 IITCQ---GGDYTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred EEEcC---CHHHHHHHHHHHHhCCCCeEEEECChhh
Confidence 98882 34567778888899998 4889998764
No 148
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.46 E-value=79 Score=22.12 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhCCceeeceeec---CCCceeEEEEEcCCCCeeeeeC
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMK---RGPTGQCVCLVDASGNRTMRPC 151 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~---~~~T~~~~~~~~~~g~r~~~~~ 151 (241)
.=+.+.+.|++.|+........ ....++.+.+.|++|.+.-+.+
T Consensus 81 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 81 AVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred HHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 3566888999999987654332 1234566677899998765543
No 149
>PRK08818 prephenate dehydrogenase; Provisional
Probab=41.18 E-value=2.5e+02 Score=24.72 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=48.3
Q ss_pred EeeecC-ChhHHHHHHHHHhC-CceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEE
Q 026265 100 IGAYGD-DQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR 177 (241)
Q Consensus 100 vg~vG~-D~~g~~i~~~l~~~-gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~ 177 (241)
++.+|- .-.|.++...|++. +..+.. +|.. +. . ..+ ..+.++++|+|++.
T Consensus 7 I~IIGl~GliGgslA~alk~~~~~~V~g--------------~D~~-d~------~---~~~----~~~~v~~aDlVila 58 (370)
T PRK08818 7 VGIVGSAGAYGRWLARFLRTRMQLEVIG--------------HDPA-DP------G---SLD----PATLLQRADVLIFS 58 (370)
T ss_pred EEEECCCCHHHHHHHHHHHhcCCCEEEE--------------EcCC-cc------c---cCC----HHHHhcCCCEEEEe
Confidence 566776 78999999999974 333211 1110 00 0 001 12457889999999
Q ss_pred eccccHHHHHHHHHHHHHC-----CCeEEEeCCchH
Q 026265 178 FGMFNFEVIQAAIRIAKQE-----GLSVSMDLASFE 208 (241)
Q Consensus 178 ~~~~~~~~~~~~~~~a~~~-----g~~i~~D~~~~~ 208 (241)
.|...+.++++..... .-.++.|+++..
T Consensus 59 ---vPv~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 59 ---APIRHTAALIEEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred ---CCHHHHHHHHHHHhhhhcCCCCCeEEEECCCCc
Confidence 5777777777765432 346888998764
No 150
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=41.18 E-value=2.5e+02 Score=24.59 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=24.1
Q ss_pred CccEEEEEe--cc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~~--~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++++++. +. .....+.++.+.+++.|+.+++|-.
T Consensus 131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 467777772 21 1122366778888899999999975
No 151
>smart00642 Aamy Alpha-amylase domain.
Probab=41.16 E-value=38 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 182 NFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
+.+.+.++++.|+++|+++++|+...
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45788999999999999999998543
No 152
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.22 E-value=65 Score=19.79 Aligned_cols=43 Identities=2% Similarity=0.090 Sum_probs=26.8
Q ss_pred eEEeeecCC-----hhHHHHHHHHHhCCceeeceeecCCCceeEEEEE
Q 026265 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (241)
Q Consensus 98 ~~vg~vG~D-----~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~ 140 (241)
.+++.+|.+ .....+.+.|.+.||++..+.+.......++++-
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~ 49 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVID 49 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 355666642 2455688899999999887765433344444443
No 153
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=40.07 E-value=41 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 182 NFEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
+.+.++++++.|+++|++|++|+-.
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhhhhhhhhhccccccceEEEeeec
Confidence 5678999999999999999999843
No 154
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=39.82 E-value=2.7e+02 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=14.9
Q ss_pred HHHHHHHHHHCCCeEEEeCC
Q 026265 186 IQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 186 ~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++.+.+++.|+.+++|-.
T Consensus 161 l~~I~~la~~~~i~livD~t 180 (418)
T TIGR01326 161 IEAIAEVAHAHGVPLIVDNT 180 (418)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 45666777888888888864
No 155
>PLN02242 methionine gamma-lyase
Probab=39.37 E-value=2.7e+02 Score=24.81 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=21.2
Q ss_pred ccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 171 SKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 171 ~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
.++|++. .+. .....+.++.+.+++.|+.+++|-.
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea 201 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT 201 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECC
Confidence 5677766 111 1123356667777788888888754
No 156
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=39.11 E-value=95 Score=21.15 Aligned_cols=42 Identities=7% Similarity=-0.128 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~ 150 (241)
-+.+.+.|++.|+....-......-.+.+.+.|++|.+..+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNIL 109 (112)
T ss_pred HHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEE
Confidence 467788899999986532222112224566789999876543
No 157
>PRK15447 putative protease; Provisional
Probab=38.99 E-value=1.6e+02 Score=24.90 Aligned_cols=68 Identities=9% Similarity=-0.055 Sum_probs=41.2
Q ss_pred CCccEEEEEe---cc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCcc-EEecCHHHHH
Q 026265 169 KGSKWLVLRF---GM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVD-LCFANEDEAA 237 (241)
Q Consensus 169 ~~~~~v~~~~---~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d-~l~~N~~Ea~ 237 (241)
+.+|.||++. +. +..+.+.++++.+++.|+++++-+......+...+.+.+++.. ..| ++.-|-.++.
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~~v~v~d~g~l~ 101 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-GEFLVEANDLGAVR 101 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-CCCEEEEeCHHHHH
Confidence 4799999982 21 3578899999999999999988543211001122344455552 445 4444555544
No 158
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=38.93 E-value=1.1e+02 Score=27.21 Aligned_cols=57 Identities=19% Similarity=0.129 Sum_probs=37.6
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEec
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
.++|++.+.+. .+.+.+.+.++.+++.|+.+.+|+..+. ...+.+..+.. .+|++..
T Consensus 249 aGAD~vTVH~e-a~~~ti~~ai~~akk~GikvgVD~lnp~---tp~e~i~~l~~--~vD~Vll 305 (391)
T PRK13307 249 ATADAVVISGL-APISTIEKAIHEAQKTGIYSILDMLNVE---DPVKLLESLKV--KPDVVEL 305 (391)
T ss_pred cCCCEEEEecc-CCHHHHHHHHHHHHHcCCEEEEEEcCCC---CHHHHHHHhhC--CCCEEEE
Confidence 46888888854 2566788899999999999999854321 11223333333 6777654
No 159
>PRK05939 hypothetical protein; Provisional
Probab=38.81 E-value=2.8e+02 Score=24.53 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=24.7
Q ss_pred CccEEEEEe--cc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~~--~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++. +. .....+.++.+.+++.|+.+++|-.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 466777761 11 1234567788888999999999975
No 160
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=38.64 E-value=2.2e+02 Score=24.66 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=27.4
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
...+.|++++. .+.....++...+.+.| +.++|.++.+
T Consensus 65 ~~~~vD~Vf~a---lP~~~~~~~v~~a~~aG-~~VID~S~~f 102 (343)
T PRK00436 65 ILAGADVVFLA---LPHGVSMDLAPQLLEAG-VKVIDLSADF 102 (343)
T ss_pred HhcCCCEEEEC---CCcHHHHHHHHHHHhCC-CEEEECCccc
Confidence 44678999887 35556667777776777 5689998775
No 161
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=38.61 E-value=89 Score=25.54 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=33.4
Q ss_pred hhCCccEEEEEecc-ccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 167 DVKGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 167 ~i~~~~~v~~~~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
.....|.+.++++. ...+.+.++++..++...++++-|++..
T Consensus 29 ~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~ 71 (232)
T PRK04169 29 CESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIE 71 (232)
T ss_pred HhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 45678999999654 4567788888888888899999998663
No 162
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=38.37 E-value=29 Score=23.28 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=33.8
Q ss_pred eecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceee
Q 026265 76 TIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (241)
Q Consensus 76 ~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~ 124 (241)
...+|.+...+..+. ..|.++.+.+.+| ....+.|++.||.+-
T Consensus 36 ~~~~~~~~~~~~~l~-~~~v~~li~~~iG-----~~~~~~L~~~gI~v~ 78 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLA-EEGVDVLICGGIG-----EGAFRALKEAGIKVY 78 (94)
T ss_dssp CCSSCHSTHHHHHHH-HTTESEEEESCSC-----HHHHHHHHHTTSEEE
T ss_pred ccccccchhHHHHHH-HcCCCEEEEeCCC-----HHHHHHHHHCCCEEE
Confidence 345677888888888 6899999988876 457888899999764
No 163
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=38.28 E-value=2.8e+02 Score=24.44 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 169 KGSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 169 ~~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
.+.++|+++ .+. ...-.+.++.+.+++.|+.+++|-.
T Consensus 149 ~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a 188 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNV 188 (398)
T ss_pred cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECC
Confidence 356788876 221 1112256667778888999999875
No 164
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=38.19 E-value=2.7e+02 Score=24.15 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=27.3
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
.+.|++++. .+.+...++...+.+.| +.++|.++.+
T Consensus 67 ~~~DvVf~a---lP~~~s~~~~~~~~~~G-~~VIDlS~~f 102 (346)
T TIGR01850 67 EDADVVFLA---LPHGVSAELAPELLAAG-VKVIDLSADF 102 (346)
T ss_pred cCCCEEEEC---CCchHHHHHHHHHHhCC-CEEEeCChhh
Confidence 578999888 35566777777777778 6689998775
No 165
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=37.64 E-value=85 Score=21.74 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=30.7
Q ss_pred ecCChhHHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeeee
Q 026265 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 103 vG~D~~g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~~ 150 (241)
+.+...=+.+.+.+++.|+.+........ ..+..+.+.|++|.+.-++
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEE
Confidence 34434456788999999998754322222 2345677889999876543
No 166
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=37.36 E-value=1.1e+02 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~ 147 (241)
=+.+.+.+++.|+....-......-...+.+.|++|.+-
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EE
T ss_pred HHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEE
Confidence 567788889999886443333223447778889999764
No 167
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=37.19 E-value=63 Score=23.19 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeC
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC 151 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~ 151 (241)
.=+.+.+.|++.|+.+.........-++++.+.||+|...-+..
T Consensus 78 ~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~ 121 (131)
T cd08364 78 DVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHT 121 (131)
T ss_pred HHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEec
Confidence 34669999999999765332211123567778899987655543
No 168
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=37.18 E-value=1.8e+02 Score=24.31 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=33.7
Q ss_pred cEEEEE-ecc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 172 KWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 172 ~~v~~~-~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
..|.++ ++. ..++.+.++++.+++.|..+.++.+... ..+.+.++++ ..|++.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~----~~~~~~~ll~--~~d~~~ 181 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFT----PWETIEKVLP--YVDLFL 181 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCC----CHHHHHHHHh--hCCEEE
Confidence 456666 332 2356667889999999998888887642 2234555555 556543
No 169
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=36.66 E-value=1.9e+02 Score=24.81 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=56.4
Q ss_pred CceeecCChHHHHHHHHHhh---cC-CceeEEeeecCChhHHH--HHHHHHhCCceeeceeecCCCceeEEEEEcCCCCe
Q 026265 73 PIKTIAGGSVTNTIRGLSVG---FG-VPCGLIGAYGDDQQGQL--FVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR 146 (241)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~---LG-~~~~~vg~vG~D~~g~~--i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r 146 (241)
+.....++..++-++..+ . +. .+..++...+ .++.. +.+..++.|+++..+.. +.+|
T Consensus 63 ~v~~~~~~t~a~~~~~~~-l~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i~~------------~~~~-- 125 (371)
T PF00266_consen 63 EVVFTSNGTEALNAVASS-LLNPLKPGDEVLVTSNE--HPSNRYPWEEIAKRKGAEVRVIPA------------DPGG-- 125 (371)
T ss_dssp EEEEESSHHHHHHHHHHH-HHHHGTTTCEEEEEESS--HHHHHHHHHHHHHHTTEEEEEEEE------------GTTS--
T ss_pred ccccccccchhhhhhhhc-ccccccccccccccccc--ccccccccccccccchhhhccccc------------cccc--
Confidence 344555555444444443 2 22 3444444433 44544 55555677776653322 1111
Q ss_pred eeeeCccccCCCCcccCChhhhCCccEEEEE-eccc--cHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 147 TMRPCLSNAVKIQADELIAEDVKGSKWLVLR-FGMF--NFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 147 ~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~-~~~~--~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
.++.+++....-.+.+++.++ .... ....+.++.+.++++|+.+++|....
T Consensus 126 ----------~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~ 179 (371)
T PF00266_consen 126 ----------SLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQS 179 (371)
T ss_dssp ----------SCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTT
T ss_pred ----------hhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhc
Confidence 222334433333678888888 2211 11235667788888999999998644
No 170
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=36.64 E-value=55 Score=27.84 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHH
Q 026265 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQ 117 (241)
Q Consensus 82 ~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~ 117 (241)
.-+....|+ +.|++.+|+..+|-|..|+.+.+.|+
T Consensus 20 ~~~~~~~~~-~~~~~a~f~~~~gpd~~g~~~~r~~~ 54 (296)
T PRK15394 20 VPRLLEILS-KHGIQASFFFSVGPDNMGRHLWRLLK 54 (296)
T ss_pred HHHHHHHHH-HcCCCEEEEeccCCCchhHHHHHHhh
Confidence 456777888 89999999999999999988776654
No 171
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=36.28 E-value=1.2e+02 Score=20.26 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHH
Q 026265 184 EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (241)
Q Consensus 184 ~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~ 237 (241)
+...++.+..++.|+.+.+|.... .+.+.+.........-+++..++|.+
T Consensus 16 ~~a~~l~~~L~~~gi~v~~d~~~~----~~~k~~~~a~~~g~p~~iiiG~~e~~ 65 (94)
T PF03129_consen 16 EYAQELANKLRKAGIRVELDDSDK----SLGKQIKYADKLGIPFIIIIGEKELE 65 (94)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSSS----THHHHHHHHHHTTESEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC----chhHHHHHHhhcCCeEEEEECchhHh
Confidence 456778888899999999998544 23333333222225567777777764
No 172
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=36.05 E-value=1.4e+02 Score=21.39 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=37.5
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCC--CeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHH
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g--~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea 236 (241)
.++|+|.++..........++++..|+.+ +++++ ++... ....+.+ +....+|+++..+-|.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~--GG~~~-t~~p~~~---~~~~~~D~vv~GEgE~ 101 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVV--GGPHA-TFFPEEI---LEEPGVDFVVIGEGEE 101 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEE--CCcch-hhCHHHH---hcCCCCCEEEECCcHH
Confidence 58999999943234446777888888876 55555 32211 0122322 1123899999988774
No 173
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=35.84 E-value=53 Score=23.64 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCcc
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLS 153 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g 153 (241)
.=+.+.+.|++.|+............+..+.+.|++|.+.-+....
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 3577888999999975321111123456777889999887665443
No 174
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.37 E-value=1.1e+02 Score=20.86 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCc-eeEEEEEcCCCCeeee
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPT-GQCVCLVDASGNRTMR 149 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T-~~~~~~~~~~g~r~~~ 149 (241)
.-+.+.+.+++.|+........ .+. +..+.+.|++|.+..+
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~Gn~iei 118 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQD-VFWGGYSGYFADPDGHLWEV 118 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCcc-CCCCceEEEEECCCCCEEEE
Confidence 3577888888899877532222 233 5677788999987554
No 175
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=35.35 E-value=1.6e+02 Score=25.37 Aligned_cols=93 Identities=8% Similarity=0.050 Sum_probs=54.9
Q ss_pred eeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEE
Q 026265 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (241)
Q Consensus 97 ~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~ 176 (241)
+.+ |..| .-|+.+++.|++.+.....+...... + ...|+. +. +.| ..++-+.+..+.+++.|++++
T Consensus 6 iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~------~-~s~gk~-i~-f~g--~~~~V~~l~~~~f~~vDia~f 71 (322)
T PRK06901 6 IAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIE------P-FGEEQG-IR-FNN--KAVEQIAPEEVEWADFNYVFF 71 (322)
T ss_pred EEE-ecCc--HHHHHHHHHHHhcCCchhheeecccc------c-ccCCCE-EE-ECC--EEEEEEECCccCcccCCEEEE
Confidence 444 5555 56999999999998766644433211 0 112321 11 112 233444444445678999888
Q ss_pred EeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
. ..+...++...+.+.|+. ++|-++.+
T Consensus 72 a----g~~~s~~~ap~a~~aG~~-VIDnSsa~ 98 (322)
T PRK06901 72 A----GKMAQAEHLAQAAEAGCI-VIDLYGIC 98 (322)
T ss_pred c----CHHHHHHHHHHHHHCCCE-EEECChHh
Confidence 3 335667777788888854 67877653
No 176
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.17 E-value=90 Score=25.96 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhC
Q 026265 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFS 119 (241)
Q Consensus 82 ~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~ 119 (241)
+.|.|.++| ++|.+|.++-. |-+|-.+...|.-.
T Consensus 75 a~nLA~alA-~~G~rVlliDa---D~~gps~~~~l~~~ 108 (265)
T COG0489 75 AVNLAAALA-QLGKRVLLLDA---DLRGPSIPRMLGLE 108 (265)
T ss_pred HHHHHHHHH-hcCCcEEEEeC---cCCCCchHHHhCCC
Confidence 689999999 89999888876 66777777777654
No 177
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=34.52 E-value=1e+02 Score=20.91 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeee
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~ 149 (241)
.-+.+.+.+++.|+.+..........+..+.+.|++|.+.-+
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi 108 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLEL 108 (113)
T ss_pred HHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEE
Confidence 457788999999998653322222346677788999977544
No 178
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=34.36 E-value=3.2e+02 Score=23.96 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=24.2
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. .....+.++.+.+++.|+.+++|-.
T Consensus 146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a 184 (388)
T PRK07811 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184 (388)
T ss_pred CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECC
Confidence 56778776 221 1234566777788888999999864
No 179
>PRK04296 thymidine kinase; Provisional
Probab=34.22 E-value=1.6e+02 Score=22.91 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=26.4
Q ss_pred CccEEEEE-eccccHHHHHHHHHHHHHCCCeEEEe
Q 026265 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMD 203 (241)
Q Consensus 170 ~~~~v~~~-~~~~~~~~~~~~~~~a~~~g~~i~~D 203 (241)
+.++|.++ ..+++.+.+.++++.++..|+.+++-
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~t 112 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICY 112 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 67899999 44456666778888888899888773
No 180
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.90 E-value=1.7e+02 Score=21.96 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=54.4
Q ss_pred CChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEEecc--cc
Q 026265 105 DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM--FN 182 (241)
Q Consensus 105 ~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~~~~--~~ 182 (241)
+...|..+.+.|.+.|.++..+.+.+.+... ..+ -.++. + +..+++.+ .+.++++|.++..... ..
T Consensus 7 tG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~------~~~-~~~~~--~--d~~d~~~~-~~al~~~d~vi~~~~~~~~~ 74 (183)
T PF13460_consen 7 TGFVGRALAKQLLRRGHEVTALVRSPSKAED------SPG-VEIIQ--G--DLFDPDSV-KAALKGADAVIHAAGPPPKD 74 (183)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESSGGGHHH------CTT-EEEEE--S--CTTCHHHH-HHHHTTSSEEEECCHSTTTH
T ss_pred CChHHHHHHHHHHHCCCEEEEEecCchhccc------ccc-cccce--e--eehhhhhh-hhhhhhcchhhhhhhhhccc
Confidence 4678999999999999877766665432111 111 11111 1 11222222 3467789999888321 12
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 183 FEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 183 ~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
.+.+..+++.+++.|++-++-++.
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ccccccccccccccccccceeeec
Confidence 566778888888888866655543
No 181
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=33.74 E-value=1.2e+02 Score=25.30 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecC
Q 026265 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR 130 (241)
Q Consensus 82 ~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~ 130 (241)
++-.|.-|. .+|.++..+..||+|. +.|.+.++..-=..+.+....
T Consensus 23 a~~la~~L~-~~G~~v~~~~~VgD~~--~~I~~~l~~a~~r~D~vI~tG 68 (255)
T COG1058 23 AAFLADELT-ELGVDLARITTVGDNP--DRIVEALREASERADVVITTG 68 (255)
T ss_pred HHHHHHHHH-hcCceEEEEEecCCCH--HHHHHHHHHHHhCCCEEEECC
Confidence 555677777 7899999999999984 666666655433334444443
No 182
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=33.57 E-value=93 Score=27.85 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=64.2
Q ss_pred hcC-CceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeee--eeCccccCCCCcccCChhhh
Q 026265 92 GFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM--RPCLSNAVKIQADELIAEDV 168 (241)
Q Consensus 92 ~LG-~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~--~~~~g~~~~l~~~~~~~~~i 168 (241)
.+| +.-.=+-.+|....|+.+.+.|.+.|+.--.+.- +| -+|.- .--.+ ....+.+++ ...+
T Consensus 172 ~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN---RT----------~erA~~La~~~~-~~~~~l~el-~~~l 236 (414)
T COG0373 172 IFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN---RT----------LERAEELAKKLG-AEAVALEEL-LEAL 236 (414)
T ss_pred HhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc---CC----------HHHHHHHHHHhC-CeeecHHHH-HHhh
Confidence 455 4655566777788999999999998884322221 11 11111 10011 112222232 2478
Q ss_pred CCccEEEEE-ecc---ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHHh
Q 026265 169 KGSKWLVLR-FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (241)
Q Consensus 169 ~~~~~v~~~-~~~---~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~~ 238 (241)
.++|+|+.+ .+. ++.+.+...++..+. .++||++-+ ++..+..-. ..++...+.++.+.
T Consensus 237 ~~~DvVissTsa~~~ii~~~~ve~a~~~r~~---~livDiavP---Rdie~~v~~-----l~~v~l~~iDDL~~ 299 (414)
T COG0373 237 AEADVVISSTSAPHPIITREMVERALKIRKR---LLIVDIAVP---RDVEPEVGE-----LPNVFLYTIDDLEE 299 (414)
T ss_pred hhCCEEEEecCCCccccCHHHHHHHHhcccC---eEEEEecCC---CCCCccccC-----cCCeEEEehhhHHH
Confidence 899999998 332 344555555543222 799999754 233333221 34555555555543
No 183
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=33.42 E-value=1.2e+02 Score=21.00 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR 149 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~~ 149 (241)
=+.+.+.|++.|+.+........ ..+..+.+.||+|.+.-+
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~ 116 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMEL 116 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEE
Confidence 46688999999997653322212 345677788999987544
No 184
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=33.19 E-value=3.5e+02 Score=24.02 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=56.7
Q ss_pred cCChHHHHHHHHHhhcC-CceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccC
Q 026265 78 AGGSVTNTIRGLSVGFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAV 156 (241)
Q Consensus 78 ~GG~~~N~a~~la~~LG-~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~ 156 (241)
..|.++=-|...+ .+. .+-.++..-| .||+++.+.++.+|.++..+.... | .
T Consensus 63 gsGt~amEAav~s-l~~pgdkVLv~~nG--~FG~R~~~ia~~~g~~v~~~~~~w-------------g-----------~ 115 (383)
T COG0075 63 GSGTLAMEAAVAS-LVEPGDKVLVVVNG--KFGERFAEIAERYGAEVVVLEVEW-------------G-----------E 115 (383)
T ss_pred CCcHHHHHHHHHh-ccCCCCeEEEEeCC--hHHHHHHHHHHHhCCceEEEeCCC-------------C-----------C
Confidence 3444443343333 343 3344444444 799999999999999876444321 2 1
Q ss_pred CCCcccCChhh--hCCccEEEEE-eccc--cHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 157 KIQADELIAED--VKGSKWLVLR-FGMF--NFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 157 ~l~~~~~~~~~--i~~~~~v~~~-~~~~--~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
.++++++.... -.+.+.|.+. .+.. -..-+.++.+.++++|..+++|.-+.
T Consensus 116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS 171 (383)
T COG0075 116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSS 171 (383)
T ss_pred CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEeccc
Confidence 23444443211 1234444444 2210 12346677788889999999997433
No 185
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=33.19 E-value=94 Score=27.68 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=37.7
Q ss_pred CCccEEEEEe-cc--ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCH
Q 026265 169 KGSKWLVLRF-GM--FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANE 233 (241)
Q Consensus 169 ~~~~~v~~~~-~~--~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~ 233 (241)
.+.++|.++. +. .....+.++.+.+|+.|+.+++|..... ...+-++.+ -.+|++..+-
T Consensus 161 ~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~--~h~~idv~~----l~~Df~afsg 222 (405)
T COG0520 161 PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAA--GHLPIDVQE----LGCDFLAFSG 222 (405)
T ss_pred CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECcccc--CccCCCchh----cCCCEEEEcc
Confidence 4578898882 11 1234588899999999999999986332 122223322 1578877653
No 186
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=33.08 E-value=2e+02 Score=22.24 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=26.3
Q ss_pred hCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEe
Q 026265 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD 203 (241)
Q Consensus 168 i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D 203 (241)
-.++|++.+.... +.+...++++.+++.|+++.++
T Consensus 75 ~aGad~i~~h~~~-~~~~~~~~i~~~~~~g~~~~v~ 109 (202)
T cd04726 75 KAGADIVTVLGAA-PLSTIKKAVKAAKKYGKEVQVD 109 (202)
T ss_pred hcCCCEEEEEeeC-CHHHHHHHHHHHHHcCCeEEEE
Confidence 3478888887542 3456778889999999999876
No 187
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=32.97 E-value=2.3e+02 Score=21.90 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=49.9
Q ss_pred eEEeeecCChhHHHHHH--HHHhCCceeeceeecC-CCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEE
Q 026265 98 GLIGAYGDDQQGQLFVS--NMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (241)
Q Consensus 98 ~~vg~vG~D~~g~~i~~--~l~~~gvd~~~~~~~~-~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v 174 (241)
...|+.....-.+.++. .++..|..+..+...- .+-+.. .+...+|...-..... .-...++......+.|+|
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~~~-~I~s~~g~~~~~~~~~---~~~~~~~~~~~~~~~dvI 80 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYGED-KIVSHDGISLEAIVDP---IDNLFEIIDILENDYDVI 80 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCCSS-EEEHTTSCEEEEESSE---ESSGGGGGGGCCTTCSEE
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCcCCCC-eEEecCCCcccccccc---hhhHHHHHHHhccCCCEE
Confidence 34577776665555543 3566677665544432 121111 2333344332221000 011112222222339999
Q ss_pred EEE-eccccHHHHHHHHHHHHHCCCeEEE
Q 026265 175 VLR-FGMFNFEVIQAAIRIAKQEGLSVSM 202 (241)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~a~~~g~~i~~ 202 (241)
.++ ..+++ +.+.++.+.+...|+.|++
T Consensus 81 ~IDEaQFf~-~~i~~l~~~~~~~g~~Vi~ 108 (176)
T PF00265_consen 81 GIDEAQFFD-EQIVQLVEILANKGIPVIC 108 (176)
T ss_dssp EESSGGGST-TTHHHHHHHHHHTT-EEEE
T ss_pred EEechHhhH-HHHHHHHHHHHhCCCeEEE
Confidence 999 54456 5566788888889998775
No 188
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=32.55 E-value=99 Score=20.95 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceee
Q 026265 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (241)
Q Consensus 79 GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~ 124 (241)
+|.+...+..|. ..|.++.+.+.+|.. ..+.|++.||.+-
T Consensus 49 ~~~~~~~~~~l~-~~~v~~vi~~~iG~~-----~~~~l~~~gI~v~ 88 (103)
T cd00851 49 GGAGGKAAEFLA-DEGVDVVIVGGIGPR-----ALNKLRNAGIKVY 88 (103)
T ss_pred CCCchHHHHHHH-HcCCCEEEeCCCCcC-----HHHHHHHCCCEEE
Confidence 345677888888 799999999887754 6778888999764
No 189
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=32.23 E-value=1.7e+02 Score=25.51 Aligned_cols=32 Identities=25% Similarity=0.121 Sum_probs=23.6
Q ss_pred ceeecCChHHHHHHHHHhhcCCceeEEeeecCC
Q 026265 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDD 106 (241)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D 106 (241)
.-.-.||+|.|+.-.+. +.+....-+-.+-+|
T Consensus 21 ~viGvGg~G~n~v~~l~-~~~~~~~~~iainTD 52 (349)
T TIGR00065 21 KVIGVGGGGNNTVNRML-EEGVEGVEFIAINTD 52 (349)
T ss_pred EEEEeCCcHHHHHHHHH-HcCCCceEEEEEECC
Confidence 45667999999999998 788654444455566
No 190
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=32.16 E-value=1e+02 Score=17.68 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEE
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL 139 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~ 139 (241)
+...+.+.|.+.+++...+.........++++
T Consensus 16 ~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v 47 (60)
T cd04868 16 VAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEE
Confidence 45668999999999988776653223444443
No 191
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=31.45 E-value=38 Score=27.49 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=33.5
Q ss_pred hhCCccEEEEEecc-ccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 167 DVKGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 167 ~i~~~~~v~~~~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
.....|.+.++++. ...+.+.++++..|+..+++++-|++..
T Consensus 24 ~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~ 66 (223)
T TIGR01768 24 AESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPT 66 (223)
T ss_pred HhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCcc
Confidence 34568999999654 5667888888999999999999997653
No 192
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=31.41 E-value=1.9e+02 Score=25.89 Aligned_cols=60 Identities=10% Similarity=0.182 Sum_probs=36.5
Q ss_pred hCCccEEEEE-ecccc--HHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecC
Q 026265 168 VKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (241)
Q Consensus 168 i~~~~~v~~~-~~~~~--~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N 232 (241)
.++||++.++ ..+.. .....++++.+++.|++|++--.-. ..+.+++.+-++ .+|+++.+
T Consensus 34 ~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a---~~~pee~~~~~~--~vd~v~g~ 96 (430)
T TIGR01125 34 YEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLV---QRYKEELKEEIP--EVHAITGS 96 (430)
T ss_pred cccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCcc---ccchHHHHhhCC--CCcEEECC
Confidence 3468999998 44322 2335666777777788877743211 134555544444 78888876
No 193
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=31.11 E-value=3.3e+02 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHCCCeEEEeC
Q 026265 182 NFEVIQAAIRIAKQEGLSVSMDL 204 (241)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~i~~D~ 204 (241)
+.+.+.++++.++++|+.+++|-
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De 165 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDE 165 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEEC
Confidence 34455555555555566666554
No 194
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.07 E-value=3.2e+02 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=20.5
Q ss_pred EeeecCChhHHHHHHHHHhCCceee
Q 026265 100 IGAYGDDQQGQLFVSNMQFSGVDVS 124 (241)
Q Consensus 100 vg~vG~D~~g~~i~~~l~~~gvd~~ 124 (241)
++.+|....|..+...|.+.|.++.
T Consensus 7 I~iiG~G~~G~~lA~~l~~~G~~V~ 31 (308)
T PRK14619 7 IAILGAGAWGSTLAGLASANGHRVR 31 (308)
T ss_pred EEEECccHHHHHHHHHHHHCCCEEE
Confidence 6777888899999999988887654
No 195
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.60 E-value=1e+02 Score=24.49 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=32.2
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEE--EeCCchHHHhhchhhHHhhhcCCCccEEec
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVS--MDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~--~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
.+++++.+-++. .....++++..++.|.+.- ++|..+ .+.+..+++ .+|++..
T Consensus 79 ~g~~~i~~H~E~--~~~~~~~i~~ik~~g~k~GialnP~T~------~~~~~~~l~--~vD~Vlv 133 (201)
T PF00834_consen 79 AGADYITFHAEA--TEDPKETIKYIKEAGIKAGIALNPETP------VEELEPYLD--QVDMVLV 133 (201)
T ss_dssp HT-SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEEE-TTS-------GGGGTTTGC--CSSEEEE
T ss_pred cCCCEEEEcccc--hhCHHHHHHHHHHhCCCEEEEEECCCC------chHHHHHhh--hcCEEEE
Confidence 457888888652 2345577888899998855 555433 234556666 7787653
No 196
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.59 E-value=33 Score=24.05 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=7.9
Q ss_pred eeecCChhHHHHHHHHHh
Q 026265 101 GAYGDDQQGQLFVSNMQF 118 (241)
Q Consensus 101 g~vG~D~~g~~i~~~l~~ 118 (241)
+.+|-..+|......+.+
T Consensus 4 ~iiG~G~~g~~~~~~~~~ 21 (120)
T PF01408_consen 4 GIIGAGSIGRRHLRALLR 21 (120)
T ss_dssp EEESTSHHHHHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHHh
Confidence 344444445444444443
No 197
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=30.57 E-value=1.1e+02 Score=18.57 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEEE
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~ 140 (241)
....+.+.|.+.||++..+.+.......++++-
T Consensus 17 ~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~ 49 (66)
T cd04922 17 VAATFFSALAKANVNIRAIAQGSSERNISAVID 49 (66)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccEEEEEEe
Confidence 456688999999999877765332344444443
No 198
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=30.51 E-value=1.6e+02 Score=19.90 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~ 147 (241)
-+.+.+.|++.|+....-.......+..+.+.|++|.+-
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~ 110 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVF 110 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEE
Confidence 466778888899876533222223667778889998754
No 199
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=30.40 E-value=1.3e+02 Score=20.35 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=30.0
Q ss_pred ecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee
Q 026265 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 103 vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~ 150 (241)
+.+...=+.+.+.|++.|+...........-+..+.+.|++|.+.-+.
T Consensus 65 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 112 (117)
T cd07240 65 VASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELF 112 (117)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEE
Confidence 333333566888899999976543322222446667889999876554
No 200
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=30.27 E-value=1.4e+02 Score=18.65 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=28.3
Q ss_pred eeEEeeecCCh----hHHHHHHHHHhCCceeeceeecCCCceeEEEEE
Q 026265 97 CGLIGAYGDDQ----QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (241)
Q Consensus 97 ~~~vg~vG~D~----~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~ 140 (241)
...++.+|++- ....+.+.|.+.||++..+.........++++-
T Consensus 2 ~a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~ 49 (66)
T cd04915 2 VAIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVD 49 (66)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEE
Confidence 45677777532 355778888999999876666543445554443
No 201
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.13 E-value=1.6e+02 Score=26.19 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=26.6
Q ss_pred ecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCce
Q 026265 77 IAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (241)
Q Consensus 77 ~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd 122 (241)
-.|+.|.-+|..|+ ..|.++..+..-..+.. +...+.|.+.|+.
T Consensus 12 G~g~~G~~~A~~l~-~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 12 GAGVSGLALAKFLK-KLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred CCCHHHHHHHHHHH-HCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 34556667778888 78988877755222222 3334556666765
No 202
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.01 E-value=3.1e+02 Score=24.02 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred Eeeec-CChhHHHHHHHHHhCCceee
Q 026265 100 IGAYG-DDQQGQLFVSNMQFSGVDVS 124 (241)
Q Consensus 100 vg~vG-~D~~g~~i~~~l~~~gvd~~ 124 (241)
++.+| ..-.|..+...|++.|.++.
T Consensus 101 I~IiGG~GlmG~slA~~l~~~G~~V~ 126 (374)
T PRK11199 101 VVIVGGKGQLGRLFAKMLTLSGYQVR 126 (374)
T ss_pred EEEEcCCChhhHHHHHHHHHCCCeEE
Confidence 56666 67899999999999886543
No 203
>PRK11263 cardiolipin synthase 2; Provisional
Probab=29.89 E-value=1.7e+02 Score=26.13 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHhhcCCceeEE-eeecCChhHHHHHHHHHhCCceeece
Q 026265 79 GGSVTNTIRGLSVGFGVPCGLI-GAYGDDQQGQLFVSNMQFSGVDVSRL 126 (241)
Q Consensus 79 GG~~~N~a~~la~~LG~~~~~v-g~vG~D~~g~~i~~~l~~~gvd~~~~ 126 (241)
|-.-.++...++ +-|++|.++ ..+|.....+.+.+.|.+.||.+...
T Consensus 47 g~~l~~aL~~aa-~rGV~Vril~D~~gs~~~~~~~~~~L~~aGv~v~~~ 94 (411)
T PRK11263 47 GKQLHAALLAAA-QRGVKVEVLVDGYGSPDLSDEFVNELTAAGVRFRYF 94 (411)
T ss_pred HHHHHHHHHHHH-HCCCEEEEEEECCCCCCCCHHHHHHHHHCCeEEEEe
Confidence 344567777777 789999764 57787666788899999999988643
No 204
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=29.77 E-value=2e+02 Score=20.22 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=17.6
Q ss_pred Eeeec-CChhHHHHHHHHHhC-Cceeece
Q 026265 100 IGAYG-DDQQGQLFVSNMQFS-GVDVSRL 126 (241)
Q Consensus 100 vg~vG-~D~~g~~i~~~l~~~-gvd~~~~ 126 (241)
++.+| ....|..+.+.|.+. ++.+..+
T Consensus 2 i~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 2 VAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred EEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 35566 356788888888874 6655433
No 205
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=29.70 E-value=71 Score=19.99 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee
Q 026265 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 110 ~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~ 150 (241)
..|...+-=.|+...... ...++-.++++++.+|+|.+.+
T Consensus 21 ~~i~~FCfP~G~~~~~~~-~~~~~~f~FvLT~~~G~r~Yg~ 60 (65)
T PF03456_consen 21 PSIPMFCFPDGIEISSQS-RPPPQFFSFVLTDEDGSRLYGY 60 (65)
T ss_dssp HHHHHHHS-S-CCCCGGG--GSSCEEEEEEE-TTS-EEEEE
T ss_pred hhCCccCCCCCcEeeccc-cCCCeEEEEEEECCCCCEEEEE
Confidence 444444455566554433 2347899999999999998743
No 206
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=29.29 E-value=1.7e+02 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=12.4
Q ss_pred EeeecCChhHHHHHHHHHhCC
Q 026265 100 IGAYGDDQQGQLFVSNMQFSG 120 (241)
Q Consensus 100 vg~vG~D~~g~~i~~~l~~~g 120 (241)
|+.+|...||..+...|.+.|
T Consensus 4 I~ViGaGswGTALA~~la~ng 24 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNG 24 (329)
T ss_pred EEEEcCChHHHHHHHHHHhcC
Confidence 445555666666666666655
No 207
>PRK09330 cell division protein FtsZ; Validated
Probab=28.74 E-value=2.5e+02 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=22.3
Q ss_pred ceeecCChHHHHHHHHHhhcCCceeEEeeecCC
Q 026265 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDD 106 (241)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D 106 (241)
.-.-.||+|.|+.-.+. +.|.+-.=+-.+-+|
T Consensus 17 kViGvGG~G~Nav~~m~-~~~~~~v~fia~NTD 48 (384)
T PRK09330 17 KVIGVGGGGGNAVNRMI-EEGIQGVEFIAANTD 48 (384)
T ss_pred EEEEECCcHHHHHHHHH-HcCCCCceEEEEeCc
Confidence 34567999999999998 788653333344556
No 208
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=28.68 E-value=1.5e+02 Score=20.24 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~ 147 (241)
=+.+.+.|++.|+........ ...+....+.|++|.+.
T Consensus 81 id~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DpdG~~i 118 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGD-GGMKGIAFIKDPDGYWI 118 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCcc-CCCceEEEEECCCCCEE
Confidence 355788999999987643322 24455556788888764
No 209
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.41 E-value=1.7e+02 Score=19.92 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~ 149 (241)
=+.+.+.+.+.|+....... ....+..+.+.|++|.+.-+
T Consensus 80 l~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~~ie~ 119 (122)
T cd08354 80 LAEWEAHLEAKGVAIESEVQ-WPRGGRSLYFRDPDGNLLEL 119 (122)
T ss_pred HHHHHHHHHhcCCceecccc-CCCCeeEEEEECCCCCEEEE
Confidence 46678888889987644332 23456777888999977544
No 210
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=28.30 E-value=4.1e+02 Score=23.30 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=23.0
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. ...-.+.++.+.+++.|+.+++|-.
T Consensus 137 ~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t 175 (385)
T PRK08574 137 RTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNT 175 (385)
T ss_pred CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECC
Confidence 46777776 221 0011245677788889999999875
No 211
>PRK10785 maltodextrin glucosidase; Provisional
Probab=28.25 E-value=72 Score=30.02 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 182 NFEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
+.+.+.++++.|+++|++|++|.-.
T Consensus 224 t~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 224 GDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4578999999999999999999853
No 212
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.83 E-value=2.1e+02 Score=26.96 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=66.1
Q ss_pred EeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEEec
Q 026265 100 IGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFG 179 (241)
Q Consensus 100 vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~~~ 179 (241)
+-.+|-+..|+.+.+.|+++|+++.-+..+++ ..- ...+.|.+.+. |.. -+++-+...-++++|.+.+...
T Consensus 403 vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~--~v~--~~~~~g~~v~~---GDa--t~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 403 VIIVGFGRFGQVIGRLLMANKMRITVLERDIS--AVN--LMRKYGYKVYY---GDA--TQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred EEEecCchHHHHHHHHHHhCCCCEEEEECCHH--HHH--HHHhCCCeEEE---eeC--CCHHHHHhcCCccCCEEEEEeC
Confidence 44567788999999999999997644433321 111 01123444332 311 1233344456788999888843
Q ss_pred cccHHHHHHHHHHHHHC--CCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHH
Q 026265 180 MFNFEVIQAAIRIAKQE--GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 180 ~~~~~~~~~~~~~a~~~--g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea 236 (241)
+.+....+...+++. ..+++.-..+. ...+.+.+ ..+|.+.+-..|.
T Consensus 474 --d~~~n~~i~~~~r~~~p~~~IiaRa~~~----~~~~~L~~----~Ga~~vv~e~~es 522 (601)
T PRK03659 474 --EPEDTMKIVELCQQHFPHLHILARARGR----VEAHELLQ----AGVTQFSRETFSS 522 (601)
T ss_pred --CHHHHHHHHHHHHHHCCCCeEEEEeCCH----HHHHHHHh----CCCCEEEccHHHH
Confidence 345555666666665 34666655443 22223332 2678887765554
No 213
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=27.81 E-value=1.1e+02 Score=20.28 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCe
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR 146 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r 146 (241)
=+.+.+.+++.|+........ ......+.+.|++|.+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~DP~G~~ 111 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVRQLFVRDPDGNR 111 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCccEEEEECCCCCE
Confidence 456788999999976543321 2455667788888865
No 214
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=27.74 E-value=1.6e+02 Score=23.84 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=39.0
Q ss_pred hCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEec
Q 026265 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 168 i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
+.++|++..- . +.++....+.+.+++.|++.++-+++... ...++.+.+.++....++++|
T Consensus 49 i~~~Dl~I~y-~-lHPDl~~~l~~~~~e~g~kavIvp~~~~~-~g~~~~lk~~~e~~gi~~~~P 109 (217)
T PF02593_consen 49 IPEADLLIAY-G-LHPDLTYELPEIAKEAGVKAVIVPSESPK-PGLRRQLKKQLEEFGIEVEFP 109 (217)
T ss_pred CCCCCEEEEe-c-cCchhHHHHHHHHHHcCCCEEEEecCCCc-cchHHHHHHHHHhcCceeecC
Confidence 7788886653 2 36788889999999999998887765432 134445555444112345444
No 215
>PRK06767 methionine gamma-lyase; Provisional
Probab=27.73 E-value=4.2e+02 Score=23.18 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=21.0
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. ...-.+.++.+.+++.|+.+++|-.
T Consensus 146 ~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a 184 (386)
T PRK06767 146 NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNT 184 (386)
T ss_pred CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECC
Confidence 45677766 111 1112245666667778888888864
No 216
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.68 E-value=1.6e+02 Score=18.28 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEEE
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~ 140 (241)
....+.+.|.+.||++..+.+.......++++-
T Consensus 16 ~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~ 48 (65)
T cd04918 16 ILERAFHVLYTKGVNVQMISQGASKVNISLIVN 48 (65)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 355788888999999876766544455554443
No 217
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=27.51 E-value=89 Score=27.62 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCccEEEEE--e----ccccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 169 KGSKWLVLR--F----GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 169 ~~~~~v~~~--~----~~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
++.++++++ . ...+.+.+.++.+.|+++++.++.|=-
T Consensus 162 ~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEi 204 (393)
T COG0436 162 PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEI 204 (393)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehh
Confidence 458899987 2 224678899999999999999998863
No 218
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.21 E-value=1.4e+02 Score=24.22 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEE--EeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVS--MDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~--~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
.+++++.+-++. . ....++++..|+.|++.- ++|..+ .+.+..+++ .+|+|.
T Consensus 84 ~gad~I~~H~Ea-~-~~~~~~l~~Ir~~g~k~GlalnP~T~------~~~i~~~l~--~vD~Vl 137 (223)
T PRK08745 84 AGATTISFHPEA-S-RHVHRTIQLIKSHGCQAGLVLNPATP------VDILDWVLP--ELDLVL 137 (223)
T ss_pred hCCCEEEEcccC-c-ccHHHHHHHHHHCCCceeEEeCCCCC------HHHHHHHHh--hcCEEE
Confidence 578888888652 2 235677888899998754 555433 233455555 677664
No 219
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=27.01 E-value=2.2e+02 Score=23.04 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=34.8
Q ss_pred cEEEEE-ecc-ccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEec
Q 026265 172 KWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 172 ~~v~~~-~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
+.|.++ ++. ..++.+.++++.+++.|..+.++.++... ...+.+.++++ .+|.+..
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~--~~~~~~~~ll~--~~d~v~i 129 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR--RYDPVIDELLD--VTDLVML 129 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC--cchHHHHHHHH--hCCEEEE
Confidence 356666 432 34566778899999999999998875420 12234444555 5665544
No 220
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.00 E-value=1.5e+02 Score=23.90 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEE--EeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVS--MDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~--~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
.++|++.+-++. .....++++..|+.|++.. ++|+.+. +.+..+++ .+|++.
T Consensus 80 ~gad~i~~H~Ea--~~~~~~~l~~ik~~g~k~GlalnP~Tp~------~~i~~~l~--~~D~vl 133 (220)
T PRK08883 80 AGASMITFHVEA--SEHVDRTLQLIKEHGCQAGVVLNPATPL------HHLEYIMD--KVDLIL 133 (220)
T ss_pred hCCCEEEEcccC--cccHHHHHHHHHHcCCcEEEEeCCCCCH------HHHHHHHH--hCCeEE
Confidence 468888887652 2345677888899998755 4554332 33445555 666554
No 221
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.94 E-value=1.8e+02 Score=19.46 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~ 149 (241)
=+.+.+.+++.|+...... .+...+..+.+.|++|.+..+
T Consensus 78 i~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~DP~G~~ie~ 117 (119)
T cd07263 78 IDATYEELKARGVEFSEEP-REMPYGTVAVFRDPDGNLFVL 117 (119)
T ss_pred HHHHHHHHHhCCCEEeecc-ccCCCceEEEEECCCCCEEEE
Confidence 4667788888998665433 223466788888999877543
No 222
>PRK08005 epimerase; Validated
Probab=26.89 E-value=1.4e+02 Score=23.94 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEE--EeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVS--MDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~--~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
.+++++.+-++. . ....++++..|+.|.+.- ++|+.+. +.+..+++ .+|++.
T Consensus 80 ~gad~It~H~Ea-~-~~~~~~l~~Ik~~G~k~GlAlnP~Tp~------~~i~~~l~--~vD~Vl 133 (210)
T PRK08005 80 IRPGWIFIHAES-V-QNPSEILADIRAIGAKAGLALNPATPL------LPYRYLAL--QLDALM 133 (210)
T ss_pred hCCCEEEEcccC-c-cCHHHHHHHHHHcCCcEEEEECCCCCH------HHHHHHHH--hcCEEE
Confidence 467888777652 2 235577888899998754 5554332 33445555 667664
No 223
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=26.81 E-value=1.8e+02 Score=24.08 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=12.7
Q ss_pred EeeecCChhHHHHHHHHHhCCce
Q 026265 100 IGAYGDDQQGQLFVSNMQFSGVD 122 (241)
Q Consensus 100 vg~vG~D~~g~~i~~~l~~~gvd 122 (241)
++.+|....|..+...|.+.|.+
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~ 25 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHT 25 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCE
Confidence 34445555666666666655543
No 224
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=26.80 E-value=91 Score=25.95 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHH
Q 026265 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQ 117 (241)
Q Consensus 82 ~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~ 117 (241)
+.|+|.+|+ ++|.+|.++-. |.+|..+-..|.
T Consensus 18 a~~lA~aLa-~~G~kVg~lD~---Di~q~S~~r~l~ 49 (261)
T PF09140_consen 18 AVNLAVALA-RMGKKVGLLDL---DIRQPSLPRYLE 49 (261)
T ss_dssp HHHHHHHHH-CTT--EEEEE-----TTT-HHHHHHH
T ss_pred HHHHHHHHH-HCCCeEEEEec---CCCCCCHHHHHh
Confidence 789999999 89999887754 655655555554
No 225
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=26.77 E-value=2.4e+02 Score=22.75 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=42.5
Q ss_pred CCCceeeCHHHHHHhHhhccc--cCCCCCCCceeecCChHHHHHHHHHhhcCC----ceeEEeeecCC
Q 026265 45 RGGSIPVAIEELEHILSEVKT--HILDEPSPIKTIAGGSVTNTIRGLSVGFGV----PCGLIGAYGDD 106 (241)
Q Consensus 45 ~g~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~GG~~~N~a~~la~~LG~----~~~~vg~vG~D 106 (241)
.+++..++.+...+.-....+ .||..+...+++.-|.-. .|+.|+ +.|+ ...|.|.||+|
T Consensus 10 ~~~~v~is~~QAS~FAK~VAgDFNPIHD~DaKRFCVPGDLL-FalvL~-~~GlS~~M~f~F~GMVg~~ 75 (218)
T PF12119_consen 10 QDGSVSISAEQASRFAKEVAGDFNPIHDPDAKRFCVPGDLL-FALVLA-KYGLSQKMRFRFSGMVGDD 75 (218)
T ss_pred cCCEEEEcHHHHhHHHHHhccCCCccCCCCCccccCccHHH-HHHHHH-hcCccceeEEEEeeeecCC
Confidence 445555666665544444433 377788888899888555 788999 8995 67899999987
No 226
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=26.75 E-value=1.6e+02 Score=23.93 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=33.1
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEE--EeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVS--MDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~--~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
.++|++.+-++. ......++++..|+.|.+.- ++|..+ .+.+..+++ .+|++.
T Consensus 81 aGad~it~H~Ea-~~~~~~~~i~~Ik~~G~kaGlalnP~T~------~~~l~~~l~--~vD~VL 135 (229)
T PRK09722 81 AGADFITLHPET-INGQAFRLIDEIRRAGMKVGLVLNPETP------VESIKYYIH--LLDKIT 135 (229)
T ss_pred cCCCEEEECccC-CcchHHHHHHHHHHcCCCEEEEeCCCCC------HHHHHHHHH--hcCEEE
Confidence 468888887652 11235577888899998755 555433 244555665 677664
No 227
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.60 E-value=1.8e+02 Score=19.13 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCch
Q 026265 184 EVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 184 ~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
....++....++.|..+.+|....
T Consensus 18 ~~a~~la~~Lr~~g~~v~~d~~~~ 41 (94)
T cd00861 18 ELAEKLYAELQAAGVDVLLDDRNE 41 (94)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC
Confidence 345566666777888888887643
No 228
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.52 E-value=2.1e+02 Score=19.36 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeee
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~ 149 (241)
.-+.+.+.+++.|+++...... .+.+....+.|++|.+--+
T Consensus 72 ~~~~~~~~~~~~g~~v~~~~~~-~~~g~~~~~~DPdGn~ie~ 112 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQEPTE-MDFGYTFVALDPDGHRLRV 112 (114)
T ss_pred HHHHHHHHHHHCCCeEecCccc-cCCccEEEEECCCCCEEEe
Confidence 3577888999999987543322 3566778899999987543
No 229
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.12 E-value=4.7e+02 Score=23.31 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=23.9
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
+.++|++. .+. ...-.+.++.+.+++.|+.+++|-..
T Consensus 148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~ 187 (427)
T PRK05994 148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTL 187 (427)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCc
Confidence 56778886 111 11122567777888899999999753
No 230
>PRK11478 putative lyase; Provisional
Probab=25.89 E-value=2.1e+02 Score=19.90 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~ 147 (241)
-+.+.+.|++.|+.................+.|++|...
T Consensus 86 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 124 (129)
T PRK11478 86 IDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPL 124 (129)
T ss_pred HHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEE
Confidence 356788999999986533222211223344568888764
No 231
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=25.75 E-value=47 Score=24.95 Aligned_cols=45 Identities=7% Similarity=-0.020 Sum_probs=30.8
Q ss_pred CChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 163 LIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 163 ~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
...+.+.++|++.++++.+--.++..+++.+++....+++-++.+
T Consensus 55 ~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAP 99 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGG
T ss_pred HHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCch
Confidence 335678999999999543223667788888886555666778765
No 232
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=25.35 E-value=4.2e+02 Score=22.45 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=25.8
Q ss_pred hCCccEEEEEeccc-cHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 168 VKGSKWLVLRFGMF-NFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 168 i~~~~~v~~~~~~~-~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
++..|+||+.+... ++.....++..+++.|++++++..+..
T Consensus 62 ~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~ 103 (333)
T PRK09814 62 LKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIE 103 (333)
T ss_pred CCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcH
Confidence 55668888874321 222335556677777899998876543
No 233
>PRK04148 hypothetical protein; Provisional
Probab=25.32 E-value=1.8e+02 Score=21.57 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=29.7
Q ss_pred hhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeC
Q 026265 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~ 204 (241)
+..+++|.+|--. -|++....+++.|++-++.+.+-+
T Consensus 73 ~~y~~a~liysir--pp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 73 EIYKNAKLIYSIR--PPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHhcCCEEEEeC--CCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3567888888774 267889999999999999888865
No 234
>PRK06234 methionine gamma-lyase; Provisional
Probab=25.27 E-value=4.7e+02 Score=23.01 Aligned_cols=53 Identities=13% Similarity=-0.053 Sum_probs=24.5
Q ss_pred CceeecCChHHHHHHHHHhhcC-CceeEEeeecCChhHHHHHHHHHhCCceeece
Q 026265 73 PIKTIAGGSVTNTIRGLSVGFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (241)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~LG-~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~ 126 (241)
......+|.+++.+...+ .+. .+..++..-.--..-..+...++..|+.+.++
T Consensus 81 ~~l~~~sG~~Ai~~al~~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v 134 (400)
T PRK06234 81 AAVVAASGMGAISSSLWS-ALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFV 134 (400)
T ss_pred cEEEEcCHHHHHHHHHHH-HhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEE
Confidence 455667777776655544 343 22222222110011222344556667665544
No 235
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=25.09 E-value=4.5e+02 Score=22.71 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=26.7
Q ss_pred hhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchH
Q 026265 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~ 208 (241)
+.+.++|++++. .+.+...++.+.+.+.|++ ++|.++.+
T Consensus 72 ~~~~~~DvVf~a---~p~~~s~~~~~~~~~~G~~-vIDls~~f 110 (349)
T PRK08664 72 EAVDDVDIVFSA---LPSDVAGEVEEEFAKAGKP-VFSNASAH 110 (349)
T ss_pred HHhcCCCEEEEe---CChhHHHHHHHHHHHCCCE-EEECCchh
Confidence 345688998776 3555566677777778876 58887653
No 236
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=24.96 E-value=93 Score=23.65 Aligned_cols=27 Identities=41% Similarity=0.449 Sum_probs=22.1
Q ss_pred eeecCChHHHHHHHHHhhcCCc-eeEEe
Q 026265 75 KTIAGGSVTNTIRGLSVGFGVP-CGLIG 101 (241)
Q Consensus 75 ~~~~GG~~~N~a~~la~~LG~~-~~~vg 101 (241)
....||+.+|+|+.+|..||.+ ..++|
T Consensus 135 ~~~~g~sV~~~a~~lA~~lG~~~I~L~G 162 (170)
T PF01973_consen 135 ILYSGGSVANTALQLAYYLGFKPIYLIG 162 (170)
T ss_pred cCCCCccHHHHHHHHHHHHCCCcEEEEe
Confidence 5789999999999999888975 45555
No 237
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=24.75 E-value=1.7e+02 Score=18.86 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=22.8
Q ss_pred eEEeeecCChhH--HHHHHHHHhCCceeeceeec
Q 026265 98 GLIGAYGDDQQG--QLFVSNMQFSGVDVSRLRMK 129 (241)
Q Consensus 98 ~~vg~vG~D~~g--~~i~~~l~~~gvd~~~~~~~ 129 (241)
.+++.+|.|..| ..+.+.|.+.|.++..+...
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~ 36 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA 36 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE
Confidence 567889999877 56889999999888766644
No 238
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=24.42 E-value=4.6e+02 Score=22.58 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=29.3
Q ss_pred CCceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCce
Q 026265 72 SPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (241)
Q Consensus 72 ~~~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd 122 (241)
++....+||..+|.+...+ .++-.-.++-..-+.+.-..+...++-.|..
T Consensus 72 e~ilv~~gg~~a~~~~~~a-l~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~ 121 (346)
T TIGR03576 72 EKILVFNRTSSAILATILA-LEPPGRKVVHYLPEKPAHPSIPRSCKLAGAE 121 (346)
T ss_pred ceEEEECCHHHHHHHHHHH-hCCCCCEEEECCCCCCCchhHHHHHHHcCCE
Confidence 5778889999999888887 5553222222222223334455566666654
No 239
>PLN00203 glutamyl-tRNA reductase
Probab=24.38 E-value=1.8e+02 Score=26.94 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHh-hcC---CceeEEeeecCChhHHHHHHHHHhCCc
Q 026265 84 NTIRGLSV-GFG---VPCGLIGAYGDDQQGQLFVSNMQFSGV 121 (241)
Q Consensus 84 N~a~~la~-~LG---~~~~~vg~vG~D~~g~~i~~~l~~~gv 121 (241)
.+|+-++. .+| +.-.=++.+|....|..+.+.|...|+
T Consensus 249 s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~ 290 (519)
T PLN00203 249 SAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGC 290 (519)
T ss_pred HHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCC
Confidence 34555541 234 334556777778899999999988775
No 240
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=24.31 E-value=1.3e+02 Score=28.87 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=47.2
Q ss_pred cCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHH
Q 026265 162 ELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234 (241)
Q Consensus 162 ~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~ 234 (241)
++.....-.+|.|.+-..+++.+.+.++++.+++.|....+.++.. +++...+.. .+++|=.|-.
T Consensus 125 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~-------~el~~a~~~-ga~iiGINnR 189 (695)
T PRK13802 125 QIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTR-------EEIERAIAA-GAKVIGINAR 189 (695)
T ss_pred HHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHhC-CCCEEEEeCC
Confidence 3334567789999998554577889999999999999999999765 344444442 6677766543
No 241
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=24.30 E-value=47 Score=30.09 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=46.3
Q ss_pred hhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHH
Q 026265 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (241)
Q Consensus 165 ~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~E 235 (241)
+...-++|.+.+-...++++.+.++++.+++.|....+..+.. +++...+.. .++++-.|-..
T Consensus 127 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~-------~El~~al~~-~a~iiGiNnRd 189 (454)
T PRK09427 127 LARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNE-------EELERAIAL-GAKVIGINNRN 189 (454)
T ss_pred HHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCH-------HHHHHHHhC-CCCEEEEeCCC
Confidence 4567789998888544577889999999999999999999765 344444442 66777666543
No 242
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=24.25 E-value=2.1e+02 Score=20.58 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee
Q 026265 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 108 ~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~ 150 (241)
.=+.+.+.|++.|+.+..-.......+..+.+.|++|.+.-+.
T Consensus 75 dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~ 117 (139)
T PRK04101 75 DFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFH 117 (139)
T ss_pred HHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEE
Confidence 3566888899999976432212223557777889999876554
No 243
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=24.19 E-value=2.7e+02 Score=19.88 Aligned_cols=93 Identities=14% Similarity=0.298 Sum_probs=48.2
Q ss_pred EeeecC-ChhHHHHHHHHHh-CCceeeceeecCCCceeEEEEEcCCCCee-eeeCccccCCCCc-ccCChhhhCCccEEE
Q 026265 100 IGAYGD-DQQGQLFVSNMQF-SGVDVSRLRMKRGPTGQCVCLVDASGNRT-MRPCLSNAVKIQA-DELIAEDVKGSKWLV 175 (241)
Q Consensus 100 vg~vG~-D~~g~~i~~~l~~-~gvd~~~~~~~~~~T~~~~~~~~~~g~r~-~~~~~g~~~~l~~-~~~~~~~i~~~~~v~ 175 (241)
++.+|- ...|+.+.+.+.+ .++.+........ +. ..|+.. .+..... ..... +++ .+.+..+| +.
T Consensus 3 V~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~-~~-------~~g~d~g~~~~~~~-~~~~v~~~l-~~~~~~~D-Vv 71 (124)
T PF01113_consen 3 VGIVGASGRMGRAIAEAILESPGFELVGAVDRKP-SA-------KVGKDVGELAGIGP-LGVPVTDDL-EELLEEAD-VV 71 (124)
T ss_dssp EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT-ST-------TTTSBCHHHCTSST--SSBEBS-H-HHHTTH-S-EE
T ss_pred EEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC-cc-------cccchhhhhhCcCC-cccccchhH-HHhcccCC-EE
Confidence 345555 6789999999988 6776655443321 00 011111 0111110 00110 111 23444566 55
Q ss_pred EEeccccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+++. .++...+.++.+.++|+++++-..
T Consensus 72 IDfT--~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 72 IDFT--NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp EEES---HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred EEcC--ChHHhHHHHHHHHhCCCCEEEECC
Confidence 6654 577888899999999999998654
No 244
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=24.16 E-value=2e+02 Score=19.80 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCceeeceeecCCCce-eEEEEEcCCCCeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTG-QCVCLVDASGNRTM 148 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~-~~~~~~~~~g~r~~ 148 (241)
-+.+.+.|++.|+.+..... +.+.+ +...+.|++|...-
T Consensus 80 vd~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~ie 119 (122)
T cd07235 80 VDALYAELVGAGYPGHKEPW-DAPWGQRYAIVKDPDGNLVD 119 (122)
T ss_pred HHHHHHHHHHCCCCcCCCCc-cCCCCCEEEEEECCCCCEEE
Confidence 57788899999986543222 22333 44567889997643
No 245
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=3.8e+02 Score=21.54 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=42.2
Q ss_pred CCCCCCCceeeCHHHHHHhHhhccccCCCCCCCceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCC
Q 026265 41 IPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSG 120 (241)
Q Consensus 41 ~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~g 120 (241)
+|+. .++++..+.....+.+.++-. ...+.-.--.|+|.++|+ +| +|...+.-+=.+. ...+.-++.|++.|
T Consensus 47 lpi~-~gqtis~P~~vA~m~~~L~~~---~g~~VLEIGtGsGY~aAv-la-~l~~~V~siEr~~--~L~~~A~~~L~~lg 118 (209)
T COG2518 47 LPIG-CGQTISAPHMVARMLQLLELK---PGDRVLEIGTGSGYQAAV-LA-RLVGRVVSIERIE--ELAEQARRNLETLG 118 (209)
T ss_pred ccCC-CCceecCcHHHHHHHHHhCCC---CCCeEEEECCCchHHHHH-HH-HHhCeEEEEEEcH--HHHHHHHHHHHHcC
Confidence 4443 344554555555555544432 124555556677777775 55 5766666555544 35667777788887
Q ss_pred ce
Q 026265 121 VD 122 (241)
Q Consensus 121 vd 122 (241)
++
T Consensus 119 ~~ 120 (209)
T COG2518 119 YE 120 (209)
T ss_pred CC
Confidence 74
No 246
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=24.06 E-value=2.8e+02 Score=24.72 Aligned_cols=62 Identities=6% Similarity=0.152 Sum_probs=35.8
Q ss_pred hCCccEEEEE-ecccc--HHHHHHHHHHHHHCCC---eEEEe-CCchHHHhhchhhHHhhhcCCCccEEecCHHH
Q 026265 168 VKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGL---SVSMD-LASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (241)
Q Consensus 168 i~~~~~v~~~-~~~~~--~~~~~~~~~~a~~~g~---~i~~D-~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~E 235 (241)
.+++|++.++ ..+.. .....++++.+++.+. +|++- ..+ ..+.+++...++ .+|+++.+.++
T Consensus 34 ~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a----~~~~ee~~~~~~--~vd~vvg~~~~ 102 (429)
T TIGR00089 34 PEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLA----QREGEELLKRIP--EVDIVLGPQNK 102 (429)
T ss_pred cccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECccc----ccCHHHHHhhCC--CCCEEECCCCH
Confidence 3568999987 33322 2344566667766665 55553 222 134455444445 78988887653
No 247
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=23.93 E-value=4.1e+02 Score=21.85 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=22.2
Q ss_pred eecCChHHHHHHHHHhhcCCceeEEeeecCC-hhHHHHHHHHHhCC
Q 026265 76 TIAGGSVTNTIRGLSVGFGVPCGLIGAYGDD-QQGQLFVSNMQFSG 120 (241)
Q Consensus 76 ~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D-~~g~~i~~~l~~~g 120 (241)
.-.||.+.-++.+++ ..|.++.++. .+ .-.+.+.+.+.+.+
T Consensus 123 iGaGg~g~aia~~L~-~~g~~v~v~~---R~~~~~~~la~~~~~~~ 164 (270)
T TIGR00507 123 IGAGGAARAVALPLL-KADCNVIIAN---RTVSKAEELAERFQRYG 164 (270)
T ss_pred EcCcHHHHHHHHHHH-HCCCEEEEEe---CCHHHHHHHHHHHhhcC
Confidence 345666777777777 6776555443 22 22344555554433
No 248
>PRK06545 prephenate dehydrogenase; Validated
Probab=23.70 E-value=3.1e+02 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=18.4
Q ss_pred EeeecCChhHHHHHHHHHhCCceee
Q 026265 100 IGAYGDDQQGQLFVSNMQFSGVDVS 124 (241)
Q Consensus 100 vg~vG~D~~g~~i~~~l~~~gvd~~ 124 (241)
++.+|....|..+...|++.|.++.
T Consensus 3 I~iIG~GliG~siA~~L~~~G~~v~ 27 (359)
T PRK06545 3 VLIVGLGLIGGSLALAIKAAGPDVF 27 (359)
T ss_pred EEEEEeCHHHHHHHHHHHhcCCCeE
Confidence 5666777888888888888776543
No 249
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.70 E-value=2.7e+02 Score=19.70 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=23.7
Q ss_pred hCCccEEEEEec--cccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 168 VKGSKWLVLRFG--MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 168 i~~~~~v~~~~~--~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+...+++++... -.......++....++.|..+.+|..
T Consensus 24 lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~ 63 (121)
T cd00858 24 LAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS 63 (121)
T ss_pred cCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC
Confidence 445666655532 11233456677777888999998886
No 250
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=23.62 E-value=1.8e+02 Score=23.45 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=26.8
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
.++|++.+-++. +..++.+.++.+++.|.++.+.+.+.
T Consensus 87 ~Gad~itvH~ea-~~~~~~~~l~~ik~~G~~~gval~p~ 124 (228)
T PTZ00170 87 AGASQFTFHIEA-TEDDPKAVARKIREAGMKVGVAIKPK 124 (228)
T ss_pred cCCCEEEEeccC-CchHHHHHHHHHHHCCCeEEEEECCC
Confidence 468888777542 33447788888999998877766543
No 251
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=23.61 E-value=75 Score=27.59 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred hhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHH
Q 026265 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234 (241)
Q Consensus 165 ~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~ 234 (241)
.....++|.|.+-..+++.+.+.++++.|++.|..+.+.++.. +++...+....+++|=.|-.
T Consensus 198 eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~-------~ElerAl~~~ga~iIGINNR 260 (338)
T PLN02460 198 YARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDE-------REMDRVLGIEGVELIGINNR 260 (338)
T ss_pred HHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHhcCCCCEEEEeCC
Confidence 4567789998888444577889999999999999999999765 34555454113667766643
No 252
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=23.52 E-value=2.3e+02 Score=23.29 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=41.0
Q ss_pred CccEEEEEeccc----cHHHHHHHHHHHHHCCCeEEEeCCchHHH---hhchhhHHh-hhcCCCccEEec-CHHHHHhh
Q 026265 170 GSKWLVLRFGMF----NFEVIQAAIRIAKQEGLSVSMDLASFEMV---RNFRTPLLQ-LLESGDVDLCFA-NEDEAAEL 239 (241)
Q Consensus 170 ~~~~v~~~~~~~----~~~~~~~~~~~a~~~g~~i~~D~~~~~~~---~~~~~~l~~-~l~~~~~d~l~~-N~~Ea~~l 239 (241)
..|++.+++.+. ...++.++.+-.+..|..++++.+.+... ..+...+.+ +++ ..--++. |.++.+.|
T Consensus 119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P--~~g~~~~~~~~~y~yL 195 (238)
T COG2226 119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLP--LIGKLVAKDAEAYEYL 195 (238)
T ss_pred ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhh--hhceeeecChHHHHHH
Confidence 577788886542 25778888888888898899998765421 112223333 555 4444443 55555544
No 253
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=23.33 E-value=83 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHhhc-CCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCce
Q 026265 80 GSVTNTIRGLSVGF-GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTG 134 (241)
Q Consensus 80 G~~~N~a~~la~~L-G~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~ 134 (241)
|-..-.....+ .| ..+..++|.+|.-.-.+.+++.|++.|++-..+.+...|-|
T Consensus 171 ~h~~D~~~L~~-aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~~~~~l~ri~~PiG 225 (246)
T TIGR02964 171 DHALDLELCHA-ALRRGDFAYFGLIGSKTKRARFEHRLRARGVDPAQIARMTCPIG 225 (246)
T ss_pred ChHHHHHHHHH-HHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCCHHHHhhEeCCCC
Confidence 33334343333 46 46788999999988899999999999986655444433444
No 254
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.27 E-value=2.6e+02 Score=19.22 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeC
Q 026265 107 QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC 151 (241)
Q Consensus 107 ~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~ 151 (241)
..=+.+.+.|++.|+..... .....+..+.+.|++|.+.-+.+
T Consensus 76 ~~v~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~DPdG~~iEi~~ 118 (125)
T cd07255 76 ADLAAALRRLIELGIPLVGA--SDHLVSEALYLSDPEGNGIEIYA 118 (125)
T ss_pred HHHHHHHHHHHHcCCceecc--ccccceeEEEEECCCCCEEEEEE
Confidence 34577888999999965321 22234456678899998875544
No 255
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=23.26 E-value=2.5e+02 Score=19.15 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCceeecee-ecCC-CceeEEEEEcCCCCeeeeeC
Q 026265 109 GQLFVSNMQFSGVDVSRLR-MKRG-PTGQCVCLVDASGNRTMRPC 151 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~-~~~~-~T~~~~~~~~~~g~r~~~~~ 151 (241)
=+.+.+.|++.|+.+..-. .... .-++.+.+.|++|.+.-+.+
T Consensus 72 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 116 (120)
T cd08362 72 VDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSA 116 (120)
T ss_pred HHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEe
Confidence 4668888889999764322 1111 23556678899997765543
No 256
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=23.10 E-value=41 Score=22.93 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=24.2
Q ss_pred EEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEE
Q 026265 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLC 229 (241)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l 229 (241)
|+++|.....+....+.+..++.|..+++|- ....-..+...+.+.+. .++++
T Consensus 1 VFIS~~~~D~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~--~s~~~ 53 (102)
T PF13676_consen 1 VFISYSSEDREFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIE--RSDCV 53 (102)
T ss_dssp EEEEEEGGGCCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCT--TEEEE
T ss_pred eEEEecCCcHHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHH--hCCEE
Confidence 3455433223345566666677899999873 22111233444555555 44443
No 257
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.00 E-value=5.6e+02 Score=23.03 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=24.0
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.++|+++ .+. .....+.++.+.+++.|+.+++|-.
T Consensus 155 ~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t 193 (436)
T PRK07812 155 NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNT 193 (436)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677776 211 1123456777888899999999974
No 258
>PRK03673 hypothetical protein; Provisional
Probab=22.56 E-value=2.5e+02 Score=25.03 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeec
Q 026265 81 SVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK 129 (241)
Q Consensus 81 ~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~ 129 (241)
.+.-.+..|. .+|.++...+.+++| -+.|.+.+++..-..+.+...
T Consensus 22 N~~~la~~L~-~~G~~v~~~~~v~D~--~~~i~~~l~~a~~~~DlVI~t 67 (396)
T PRK03673 22 NAAWLADFFF-HQGLPLSRRNTVGDN--LDALVAILRERSQHADVLIVN 67 (396)
T ss_pred HHHHHHHHHH-HCCCEEEEEEEcCCC--HHHHHHHHHHHhccCCEEEEc
Confidence 3555677787 799999999999998 466888877653334444444
No 259
>PRK14057 epimerase; Provisional
Probab=22.54 E-value=1.9e+02 Score=24.04 Aligned_cols=126 Identities=11% Similarity=0.069 Sum_probs=61.3
Q ss_pred cCCceeEEeeecCCh-hHHHHHHHHHhCCceeeceeecCCC--ceeEE--EEEcCCCCeeeeeCccccCCCCcccCChh-
Q 026265 93 FGVPCGLIGAYGDDQ-QGQLFVSNMQFSGVDVSRLRMKRGP--TGQCV--CLVDASGNRTMRPCLSNAVKIQADELIAE- 166 (241)
Q Consensus 93 LG~~~~~vg~vG~D~-~g~~i~~~l~~~gvd~~~~~~~~~~--T~~~~--~~~~~~g~r~~~~~~g~~~~l~~~~~~~~- 166 (241)
|..-....+.+..|. .=..-.+.|++.|+|.-++-+.++. ...++ -++..=.+ .+...-. -.--+++..-..
T Consensus 17 ~~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~p~DvH-LMV~~P~~~i~~~ 94 (254)
T PRK14057 17 LASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ-TFIKDVH-LMVADQWTAAQAC 94 (254)
T ss_pred hcCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc-CCCeeEE-eeeCCHHHHHHHH
Confidence 443333345555563 1134566778889998888877752 11111 00100000 1100000 000112221112
Q ss_pred hhCCccEEEEEeccccHHHHHHHHHHHHHCCC-----------eEEEeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGL-----------SVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 167 ~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~-----------~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
.-.++|++.+-++. . ....+.++..++.|+ =++++|+.+. +.+..+++ .+|++.
T Consensus 95 ~~aGad~It~H~Ea-~-~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~------e~i~~~l~--~vD~VL 159 (254)
T PRK14057 95 VKAGAHCITLQAEG-D-IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL------DVIIPILS--DVEVIQ 159 (254)
T ss_pred HHhCCCEEEEeecc-c-cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH------HHHHHHHH--hCCEEE
Confidence 23468888888652 1 234567778888885 4777886543 34555565 677664
No 260
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=22.53 E-value=3.9e+02 Score=21.07 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=31.6
Q ss_pred hhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 166 ~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
..-.++|.+++.....+.+.+.++++.++..|..+.++.++.
T Consensus 90 ~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~ 131 (217)
T cd00331 90 ARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDE 131 (217)
T ss_pred HHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCH
Confidence 345679999988333456778888888888999888888654
No 261
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=22.12 E-value=3.4e+02 Score=20.26 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=31.7
Q ss_pred CCccEEEEEe-ccccHHHHHHHH--HHH-----HHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHH
Q 026265 169 KGSKWLVLRF-GMFNFEVIQAAI--RIA-----KQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234 (241)
Q Consensus 169 ~~~~~v~~~~-~~~~~~~~~~~~--~~a-----~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~ 234 (241)
.+.|+++++. .+..+..+.+.+ +.. +-.++..++|.............+.+=+. .+|++..|.-
T Consensus 85 ~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~--~ad~ivlnk~ 156 (158)
T cd03112 85 IAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA--FADRILLNKT 156 (158)
T ss_pred CCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH--HCCEEEEecc
Confidence 4689999992 223343333322 111 12245666787533211011122334455 7899998864
No 262
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=22.04 E-value=1.7e+02 Score=21.67 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=29.3
Q ss_pred ceeecCChHHHHHHHHHhhcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecC
Q 026265 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR 130 (241)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~ 130 (241)
..-..-|+|+ |.-+. +.|.+-.+...+. +.-++.|+++||.++|-...+
T Consensus 50 vaDKvvGKAA--A~lmv-~ggv~~vyA~viS-----~~Al~~L~~~gI~v~y~~~Vp 98 (134)
T PF08973_consen 50 VADKVVGKAA--AALMV-LGGVKEVYADVIS-----EPALDLLEEAGIKVSYDELVP 98 (134)
T ss_dssp EEEEEE-HHH--HHHHH-HH--SEEEEEEEE-----HHHHHHHHHTT--EEEEEEES
T ss_pred HHHHHHhHHH--HHHHH-HhcHHHHHHHHHh-----HHHHHHHHHcCCceeHhhhhh
Confidence 3445557666 44454 5677766666665 446788999999999877664
No 263
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.03 E-value=2.2e+02 Score=23.13 Aligned_cols=53 Identities=25% Similarity=0.371 Sum_probs=34.2
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCCe--EEEeCCchHHHhhchhhHHhhhcCCCccEEec
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLS--VSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~--i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
.+++++.+-++ ......+++++.|+.|++ ++|+|..+. +.+..++. .+|++..
T Consensus 83 agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~------~~i~~~l~--~vD~Vll 137 (220)
T COG0036 83 AGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPATPL------EALEPVLD--DVDLVLL 137 (220)
T ss_pred hCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCCCCH------HHHHHHHh--hCCEEEE
Confidence 45888877765 234567788888999987 556665442 33445555 6777653
No 264
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=21.97 E-value=3.2e+02 Score=24.09 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=65.0
Q ss_pred ceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEE
Q 026265 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (241)
Q Consensus 96 ~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~ 175 (241)
++.-+|.+|=..+|+++.+.|.++|=++....+.+. + +-.+++ |. ..++. +....-+.+|+|.
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdy---------s-saa~~y----g~-~~ft~--lhdlcerhpDvvL 113 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY---------S-SAAEKY----GS-AKFTL--LHDLCERHPDVVL 113 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchh---------H-HHHHHh----cc-ccccc--HHHHHhcCCCEEE
Confidence 566788888888999999999998866543333321 1 011111 11 12221 1112346789998
Q ss_pred EEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEec
Q 026265 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (241)
Q Consensus 176 ~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~ 231 (241)
++.+..+.+.+...+--.+-+--+++.|.-+.. +.-...+.+.|+ ..+|++++
T Consensus 114 lctsilsiekilatypfqrlrrgtlfvdvlSvK--efek~lfekYLP-kdfDIlct 166 (480)
T KOG2380|consen 114 LCTSILSIEKILATYPFQRLRRGTLFVDVLSVK--EFEKELFEKYLP-KDFDILCT 166 (480)
T ss_pred EEehhhhHHHHHHhcCchhhccceeEeeeeecc--hhHHHHHHHhCc-cccceEee
Confidence 884433555555554444333346677764432 122345677777 37888875
No 265
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=21.90 E-value=4.8e+02 Score=21.90 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=52.7
Q ss_pred EEeeecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEEe
Q 026265 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (241)
Q Consensus 99 ~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~~ 178 (241)
-++.+|-.-.|.++...|++.|-....+-++... ..+ ++ ....|...+...+ .....+..+|+|.++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~-~~~--------~~--a~~lgv~d~~~~~-~~~~~~~~aD~Viva- 71 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA-ATL--------KA--ALELGVIDELTVA-GLAEAAAEADLVIVA- 71 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH-HHH--------HH--HhhcCcccccccc-hhhhhcccCCEEEEe-
Confidence 4566777789999999999998876544433211 000 00 0011221221111 112356678999998
Q ss_pred ccccHHHHHHHHHHHHH--CCCeEEEeCCchH
Q 026265 179 GMFNFEVIQAAIRIAKQ--EGLSVSMDLASFE 208 (241)
Q Consensus 179 ~~~~~~~~~~~~~~a~~--~g~~i~~D~~~~~ 208 (241)
+|.....++++.... ..-.++.|+++..
T Consensus 72 --vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 72 --VPIEATEEVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred --ccHHHHHHHHHHhcccCCCCCEEEeccccc
Confidence 466666666665542 1235778887654
No 266
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.88 E-value=2.2e+02 Score=23.22 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=33.0
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHCCC--e--EEEeCCchHHHhhchhhHHhhhcCCCccEEe
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGL--S--VSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~--~--i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~ 230 (241)
.++|++.+-++. . ....++++..++.|. + ++++|+.+. +.+..+++ .+|++.
T Consensus 90 aGad~It~H~Ea-~-~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~------~~i~~~l~--~vD~VL 145 (228)
T PRK08091 90 AGADIVTLQVEQ-T-HDLALTIEWLAKQKTTVLIGLCLCPETPI------SLLEPYLD--QIDLIQ 145 (228)
T ss_pred hCCCEEEEcccC-c-ccHHHHHHHHHHCCCCceEEEEECCCCCH------HHHHHHHh--hcCEEE
Confidence 468888888652 2 235677888888887 5 556665432 34555565 677664
No 267
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=21.84 E-value=2.5e+02 Score=21.45 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=36.0
Q ss_pred cCChHHHHHHHHHhhcC-CceeEEeeec-CChhHHHHHHHHHhCCceeeceeec
Q 026265 78 AGGSVTNTIRGLSVGFG-VPCGLIGAYG-DDQQGQLFVSNMQFSGVDVSRLRMK 129 (241)
Q Consensus 78 ~GG~~~N~a~~la~~LG-~~~~~vg~vG-~D~~g~~i~~~l~~~gvd~~~~~~~ 129 (241)
.||-+...+..|+ .-| .++.++|.-+ .....+...+.+++.|..+.+...+
T Consensus 9 ~gglg~~la~~La-~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~D 61 (181)
T PF08659_consen 9 LGGLGQSLARWLA-ERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCD 61 (181)
T ss_dssp TSHHHHHHHHHHH-HTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--
T ss_pred ccHHHHHHHHHHH-HcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccC
Confidence 4677888888888 565 4677788773 4445677999999999988877654
No 268
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=21.62 E-value=4.7e+02 Score=21.66 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=26.0
Q ss_pred CccEEEEEe------ccccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLRF------GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~~------~~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.+++++.. ...+.+.+.++++.+++.|+.+++|-.
T Consensus 132 ~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a 173 (350)
T cd00609 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEA 173 (350)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecc
Confidence 456666661 113456778888899999999999985
No 269
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=21.51 E-value=19 Score=26.68 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=29.0
Q ss_pred hcCCceeEEeeecCChhHHHHHHHHHhCCceeeceeecCCCce
Q 026265 92 GFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTG 134 (241)
Q Consensus 92 ~LG~~~~~vg~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~ 134 (241)
.|..++.++|.+|.-.-.+.+++.|+ .|++-..+.+...|-|
T Consensus 76 ~l~~~~~YiG~lGS~~k~~~~~~~L~-~G~~~~~l~ri~~PiG 117 (136)
T PF13478_consen 76 ALASPARYIGLLGSRRKAARRLERLR-EGVSEEELARIHAPIG 117 (136)
T ss_dssp HTTSS-SEEEESS-HHHHHHHCCCHH-TT--CHHHTTEESSSS
T ss_pred HHcCCCCEEEeecCchHHHHHHHHhh-cccchHHHhcEEeCCC
Confidence 47889999999999988999999999 8998554444333444
No 270
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.47 E-value=2.4e+02 Score=19.15 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCee
Q 026265 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (241)
Q Consensus 110 ~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~ 147 (241)
+...+.|++.|+.................+.|++|.+.
T Consensus 84 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~i 121 (125)
T cd08352 84 EAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPL 121 (125)
T ss_pred HHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEE
Confidence 55788899999986543322222233445678888653
No 271
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.44 E-value=2.8e+02 Score=25.35 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=38.6
Q ss_pred CCccEEEEEeccccHHHHHHHHHHHHHC--CCeEEEe-CCchHHHhhchhhHHhhhcCCCccEEecCHHHHH
Q 026265 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQE--GLSVSMD-LASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (241)
Q Consensus 169 ~~~~~v~~~~~~~~~~~~~~~~~~a~~~--g~~i~~D-~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~ 237 (241)
.++|+|.++..........++++.+|+. +++|++- +.+. ...+++..-.+ .+|+++..+-|..
T Consensus 62 ~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t----~~~~~~l~~~p--~vD~Vv~GEGE~~ 127 (497)
T TIGR02026 62 HCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPT----FMFHQVLTEAP--WIDFIVRGEGEET 127 (497)
T ss_pred cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcC----cCHHHHHhcCC--CccEEEeCCcHHH
Confidence 4689999983222345566777777776 7777773 2222 22233332223 7899999988853
No 272
>PLN00175 aminotransferase family protein; Provisional
Probab=21.43 E-value=5.7e+02 Score=22.53 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=23.6
Q ss_pred CccEEEEE------eccccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLR------FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~------~~~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.+.+++. +...+.+.+.++++.++++++.++.|-.
T Consensus 187 ~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~ 228 (413)
T PLN00175 187 KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEV 228 (413)
T ss_pred CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 45666664 1113456677778888888888887753
No 273
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=21.41 E-value=1.4e+02 Score=25.83 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=28.1
Q ss_pred CCccEEEEE--ec----cccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 169 KGSKWLVLR--FG----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 169 ~~~~~v~~~--~~----~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
.+.+++++. .+ ..+.+...++++.++++++.++.|-.
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~ 207 (385)
T PRK09276 165 KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAA 207 (385)
T ss_pred ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecc
Confidence 467888887 11 14567788899999999999998864
No 274
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.37 E-value=2.4e+02 Score=26.16 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=57.4
Q ss_pred eecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEEeccc
Q 026265 102 AYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMF 181 (241)
Q Consensus 102 ~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~~~~~ 181 (241)
.+|-+..|+.+.+.|++.|+++.-+..+++ . +-... +.|.+.+. |. -.+++-+....++++|.+.+...
T Consensus 422 I~G~G~~G~~la~~L~~~g~~vvvId~d~~--~-~~~~~-~~g~~~i~---GD--~~~~~~L~~a~i~~a~~viv~~~-- 490 (558)
T PRK10669 422 LVGYGRVGSLLGEKLLAAGIPLVVIETSRT--R-VDELR-ERGIRAVL---GN--AANEEIMQLAHLDCARWLLLTIP-- 490 (558)
T ss_pred EECCChHHHHHHHHHHHCCCCEEEEECCHH--H-HHHHH-HCCCeEEE---cC--CCCHHHHHhcCccccCEEEEEcC--
Confidence 456688999999999999987643332221 1 10011 13333322 21 11233334445778998877621
Q ss_pred cHHHHHHHHHHHH--HCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHHH
Q 026265 182 NFEVIQAAIRIAK--QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (241)
Q Consensus 182 ~~~~~~~~~~~a~--~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea~ 237 (241)
+.+....+...++ ....+++.=.... ...+.+.+ -.+|+++.-+++..
T Consensus 491 ~~~~~~~iv~~~~~~~~~~~iiar~~~~----~~~~~l~~----~Gad~vv~p~~~~a 540 (558)
T PRK10669 491 NGYEAGEIVASAREKRPDIEIIARAHYD----DEVAYITE----RGANQVVMGEREIA 540 (558)
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEECCH----HHHHHHHH----cCCCEEEChHHHHH
Confidence 1122222222222 2345666544332 12222322 26788887666643
No 275
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=3e+02 Score=24.04 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=42.2
Q ss_pred hCCccEEEEE---ecc------ccHHHHHHHHHHHHHCCCeEEEeCCchHH---HhhchhhHHhhhcCCCccEEecCHHH
Q 026265 168 VKGSKWLVLR---FGM------FNFEVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFANEDE 235 (241)
Q Consensus 168 i~~~~~v~~~---~~~------~~~~~~~~~~~~a~~~g~~i~~D~~~~~~---~~~~~~~l~~~l~~~~~d~l~~N~~E 235 (241)
-..+|.||++ +.. ++.+.+.+.++.++++|+++.+-.+.... .+.+.+.+..+.. -.+|-|+.++--
T Consensus 24 ~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e-~GvDaviv~Dpg 102 (347)
T COG0826 24 AAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVE-LGVDAVIVADPG 102 (347)
T ss_pred HcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHH-cCCCEEEEcCHH
Confidence 3568999998 221 24566889999999999987765543321 1122233444443 367888877654
Q ss_pred HH
Q 026265 236 AA 237 (241)
Q Consensus 236 a~ 237 (241)
+-
T Consensus 103 ~i 104 (347)
T COG0826 103 LI 104 (347)
T ss_pred HH
Confidence 43
No 276
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.32 E-value=5e+02 Score=21.85 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHhhcCCceeEEeeecCCh---hHHHHHHHHHhCCceeeceeecCCC---ceeEEEEEcCCCCeeeeeCcc
Q 026265 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQ---QGQLFVSNMQFSGVDVSRLRMKRGP---TGQCVCLVDASGNRTMRPCLS 153 (241)
Q Consensus 80 G~~~N~a~~la~~LG~~~~~vg~vG~D~---~g~~i~~~l~~~gvd~~~~~~~~~~---T~~~~~~~~~~g~r~~~~~~g 153 (241)
|.+.-+|..++ ...-+...+...|+.. .|-.=+....+.++++..+....+. |+....-..+.|.++.....+
T Consensus 62 G~alp~A~Gak-lA~Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g 140 (279)
T PRK11866 62 GRVLPIATGVK-WANPKLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDG 140 (279)
T ss_pred ccHHHHHHHHH-HHCCCCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCC
Confidence 77888888887 4433456788888762 2222333345668888877776542 221111111223333222212
Q ss_pred cc-CCCCcccCChhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 154 NA-VKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 154 ~~-~~l~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
.. ..++...+ ...-++.++-.... ..++.+.+.++.|.+..-+.++|.-.+
T Consensus 141 ~~~~~~d~~~i--A~a~G~~~Va~~~~-~~~~~l~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 141 NIEEPFNPIAL--ALAAGATFVARGFS-GDVKHLKEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred CCCCCCCHHHH--HHHCCCCEEEEEcC-CCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 10 01111111 12234444444432 356677788888777666667776433
No 277
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=21.27 E-value=2.3e+02 Score=19.26 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~ 150 (241)
=+.+.+.|++.|+....-. . .....++.+.|++|.+.-+.
T Consensus 68 ~~~~~~~l~~~Gi~~~~~~-~-~~~~~~~~~~DP~Gn~iel~ 107 (112)
T cd08344 68 FAAFARHLEAAGVALAAAP-P-GADPDGVWFRDPDGNLLQVK 107 (112)
T ss_pred HHHHHHHHHHcCCceecCC-C-cCCCCEEEEECCCCCEEEEe
Confidence 4678999999999754221 1 22234577889999876543
No 278
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.22 E-value=5e+02 Score=21.85 Aligned_cols=124 Identities=11% Similarity=0.006 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHhhcCCceeEEeeecCChhHH---HHHHHHHhCCceeeceeecCCCceeEEEEE---cCCCCeeeeeCcc
Q 026265 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQ---LFVSNMQFSGVDVSRLRMKRGPTGQCVCLV---DASGNRTMRPCLS 153 (241)
Q Consensus 80 G~~~N~a~~la~~LG~~~~~vg~vG~D~~g~---~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~---~~~g~r~~~~~~g 153 (241)
|.+.-+|..++ ...-+-..++..|+..+.. .=+....++++++.++....+..+..-... .+.|.++.....+
T Consensus 63 G~alp~AiGak-lA~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g 141 (280)
T PRK11869 63 GRAIPAATAVK-ATNPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWG 141 (280)
T ss_pred ccHHHHHHHHH-HHCCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCC
Confidence 56777788876 4554567788888764332 223344567888887777654222111111 1111111110111
Q ss_pred ccCCCCcccCC-hhhhCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCch
Q 026265 154 NAVKIQADELI-AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (241)
Q Consensus 154 ~~~~l~~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~ 207 (241)
. ...+-++. ...--++.++...+. ..++.+.+.+++|.+..-+.++|+-.+
T Consensus 142 ~--~~~~~D~~~lA~a~G~~~va~~~~-~~~~~l~~~i~~Al~~~Gp~lIeV~~p 193 (280)
T PRK11869 142 V--FEEPFNPIALAIALDASFVARTFS-GDIEETKEILKEAIKHKGLAIVDIFQP 193 (280)
T ss_pred c--cCCCCCHHHHHHHCCCCEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 1 11111111 122334554443322 256777788888888777778876444
No 279
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=21.21 E-value=1.1e+02 Score=23.01 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=22.4
Q ss_pred ceeecCChHHHHHHHHHhhcCCceeEEeee
Q 026265 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAY 103 (241)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~LG~~~~~vg~v 103 (241)
..-..||+..|+|..+. ..+-.+..++-+
T Consensus 65 ltDl~GGSP~N~A~~l~-~~~~~~~viaGv 93 (143)
T COG2893 65 LTDLFGGSPFNVASRLA-MEGPRVEVIAGV 93 (143)
T ss_pred EEecCCCCHhHHHHHHH-hhCCCceEEecC
Confidence 45578999999999998 677776666543
No 280
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=21.21 E-value=2.4e+02 Score=18.76 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCceeeceeecCC-CceeEEEEEcCCCCeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTM 148 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~-~T~~~~~~~~~~g~r~~ 148 (241)
=+.+.+.+++.|+.......... .-...+.+.|++|.+.-
T Consensus 69 ~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie 109 (112)
T cd08349 69 VDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLR 109 (112)
T ss_pred HHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEE
Confidence 56788899999987211111111 22356668889887643
No 281
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=21.13 E-value=1.3e+02 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCccEEEEE--ec----cccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 169 KGSKWLVLR--FG----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 169 ~~~~~v~~~--~~----~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
.+.+++++. .+ ..+.+...++++.++++++.++.|-.
T Consensus 163 ~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~ 205 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNA 205 (383)
T ss_pred ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecc
Confidence 467888887 11 13567788999999999999988864
No 282
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=21.11 E-value=5.8e+02 Score=22.49 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=22.3
Q ss_pred CccEEEEE--ecc-ccHHHHHHHHHHHHHCCCeEEEeCCc
Q 026265 170 GSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (241)
Q Consensus 170 ~~~~v~~~--~~~-~~~~~~~~~~~~a~~~g~~i~~D~~~ 206 (241)
+.++|+++ .+. ...-.+.++.+.+++.|+.+++|-..
T Consensus 138 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~ 177 (388)
T PRK08861 138 KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTF 177 (388)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCc
Confidence 56778876 111 01112345666777888999998753
No 283
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.08 E-value=2.8e+02 Score=18.85 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=27.1
Q ss_pred eecCChhHHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCee
Q 026265 102 AYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (241)
Q Consensus 102 ~vG~D~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~ 147 (241)
.+.+...=+.+.+.|++.|+.............+...+.||+|...
T Consensus 77 ~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~i 122 (125)
T cd07241 77 SVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRI 122 (125)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEE
Confidence 3444344577899999999977542222222222344678998754
No 284
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=21.02 E-value=4.6e+02 Score=22.02 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=42.2
Q ss_pred ceeEEEEEcCCCCeeeeeCccccCCCCcccCChhhhCCccEEEEEec----c---cc----HHHHHHHHHHHHHCCCeEE
Q 026265 133 TGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFG----M---FN----FEVIQAAIRIAKQEGLSVS 201 (241)
Q Consensus 133 T~~~~~~~~~~g~r~~~~~~g~~~~l~~~~~~~~~i~~~~~v~~~~~----~---~~----~~~~~~~~~~a~~~g~~i~ 201 (241)
+|+.+.+.-.+|+.++++..........+.+..-.-..++++.+++- + .. ...+..+-+.+.+.+.+++
T Consensus 164 LGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lV 243 (304)
T COG2248 164 LGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLV 243 (304)
T ss_pred cceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEE
Confidence 44444433347887777654443344444454444468899998831 1 11 2345555556667778999
Q ss_pred EeCC
Q 026265 202 MDLA 205 (241)
Q Consensus 202 ~D~~ 205 (241)
+|=+
T Consensus 244 iDHH 247 (304)
T COG2248 244 IDHH 247 (304)
T ss_pred Eeeh
Confidence 9864
No 285
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.88 E-value=2.6e+02 Score=19.04 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCceeeceeecCCCce-eEEEEEcCCCCeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTG-QCVCLVDASGNRTM 148 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~-~~~~~~~~~g~r~~ 148 (241)
-+.+.+.|++.|+....-.. ..+.+ ..+.+.|++|.+.-
T Consensus 77 id~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DP~G~~ie 116 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLR-DEPWGQRHFIVRDPNGVLID 116 (119)
T ss_pred HHHHHHHHHhcCCCeeeccc-cCCCcceEEEEECCCCCEEE
Confidence 56788899999996542222 22333 55567788887643
No 286
>PRK15452 putative protease; Provisional
Probab=20.79 E-value=3.6e+02 Score=24.38 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=30.1
Q ss_pred hhhhCCccEEEEEe---cc------ccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 165 AEDVKGSKWLVLRF---GM------FNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 165 ~~~i~~~~~v~~~~---~~------~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
...-.++|.||+.+ ++ ++.+.+.++++.++++|+++++-+.
T Consensus 18 aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n 67 (443)
T PRK15452 18 YAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVN 67 (443)
T ss_pred HHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 34557899999962 21 2346788899999999999988643
No 287
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.74 E-value=2.5e+02 Score=19.43 Aligned_cols=41 Identities=12% Similarity=-0.126 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCceeeceeecCCCceeEEEEEcCCCCeeeee
Q 026265 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (241)
Q Consensus 109 g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~~~~g~r~~~~ 150 (241)
=+.+.+.+++.|+....-.. +.+.++...+.|++|.+--+.
T Consensus 82 vd~~~~~l~~~G~~i~~~p~-~~~~~~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 82 VDELVEKALAAGGKEFREPQ-DHGFMYGRSFADLDGHLWEVL 122 (124)
T ss_pred HHHHHHHHHHCCCcccCCcc-cCCceEEEEEECCCCCEEEEE
Confidence 46688889999987643222 223445667889999876443
No 288
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=20.65 E-value=1.4e+02 Score=25.52 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCccEEEEE--ec----cccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 169 KGSKWLVLR--FG----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 169 ~~~~~v~~~--~~----~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
++.+++++. .+ ..+.+...++++.|+++++.++.|-.
T Consensus 135 ~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~ 177 (350)
T TIGR03537 135 EETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDEC 177 (350)
T ss_pred hccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEecc
Confidence 456777776 11 13567788888999999999988864
No 289
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.56 E-value=2.1e+02 Score=17.19 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=27.1
Q ss_pred eEEeeecCC-----hhHHHHHHHHHhCCceeeceeecCCCceeEEEEE
Q 026265 98 GLIGAYGDD-----QQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (241)
Q Consensus 98 ~~vg~vG~D-----~~g~~i~~~l~~~gvd~~~~~~~~~~T~~~~~~~ 140 (241)
.+++.+|.. .....+.+.|.+.||+...+.+.......++++-
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~ 49 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVA 49 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 456666642 2345688999999999887765433344554443
No 290
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=20.32 E-value=2.1e+02 Score=18.21 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=33.9
Q ss_pred hCCccEEEEEeccccHHHHHHHHHHHHHCCCeEEEeCCchHHHhhchhhHHhhhcCCCccEEecCHHHH
Q 026265 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 168 i~~~~~v~~~~~~~~~~~~~~~~~~a~~~g~~i~~D~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea 236 (241)
+...++++++=.+ . .=+..+++.|+..++=.+... ..+.+...-. .+|+++-|..|+
T Consensus 19 ~~~~~~~~VGD~~-~-----~Di~~a~~~G~~~ilV~tG~~----~~~~~~~~~~--~pd~vv~~l~e~ 75 (75)
T PF13242_consen 19 VDPSRCVMVGDSL-E-----TDIEAAKAAGIDTILVLTGVY----SPEDLEKAEH--KPDYVVDDLKEA 75 (75)
T ss_dssp SGGGGEEEEESST-T-----THHHHHHHTTSEEEEESSSSS----CCCGHHHSSS--TTSEEESSGGGH
T ss_pred CCHHHEEEEcCCc-H-----hHHHHHHHcCCcEEEECCCCC----CHHHHhccCC--CCCEEECCHHhC
Confidence 3457788888211 1 113567888998887665431 2223332122 889999987775
No 291
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.10 E-value=3.4e+02 Score=24.04 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=37.2
Q ss_pred hCCccEEEEE-ecccc--HHHHHHHHHHHHHCC--CeEEEe-CCchHHHhhchhhHHhhhcCCCccEEecCHHHH
Q 026265 168 VKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEG--LSVSMD-LASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (241)
Q Consensus 168 i~~~~~v~~~-~~~~~--~~~~~~~~~~a~~~g--~~i~~D-~~~~~~~~~~~~~l~~~l~~~~~d~l~~N~~Ea 236 (241)
..++|++.++ ..+.. .....++++.+++.+ ++|++- +.+ ..+.+++.+ .+ .+|+++.++.|.
T Consensus 31 ~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a----~~~~ee~~~-~~--~vD~vv~~e~~~ 98 (414)
T TIGR01579 31 EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYA----QSNPKELAD-LK--DVDLVLGNKEKD 98 (414)
T ss_pred cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcc----ccCHHHHhc-CC--CCcEEECCCCHH
Confidence 3468999999 44321 233566777777766 555553 222 234455543 33 789999988764
No 292
>PRK05957 aspartate aminotransferase; Provisional
Probab=20.04 E-value=2.4e+02 Score=24.61 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=26.6
Q ss_pred CccEEEEEe--c----cccHHHHHHHHHHHHHCCCeEEEeCC
Q 026265 170 GSKWLVLRF--G----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (241)
Q Consensus 170 ~~~~v~~~~--~----~~~~~~~~~~~~~a~~~g~~i~~D~~ 205 (241)
+.+.+++.. + ..+.+.+.++++.|++.|+.++.|-.
T Consensus 160 ~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~ 201 (389)
T PRK05957 160 KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEA 201 (389)
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEecc
Confidence 567777761 1 13567788899999999999998864
Done!