Query 026266
Match_columns 241
No_of_seqs 212 out of 737
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 100.0 1.7E-31 3.7E-36 222.4 11.4 119 7-127 3-122 (242)
2 KOG0439 VAMP-associated protei 100.0 3.8E-28 8.2E-33 208.4 16.0 133 1-135 3-138 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 8.5E-24 1.9E-28 161.9 12.5 104 7-111 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.7 3.1E-07 6.8E-12 69.2 11.3 70 5-74 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.0 0.012 2.5E-07 45.7 10.3 108 7-127 2-118 (122)
6 PRK10884 SH3 domain-containing 96.3 0.012 2.5E-07 50.5 6.3 68 171-238 121-191 (206)
7 PRK09918 putative fimbrial cha 94.2 0.69 1.5E-05 40.2 10.7 107 6-128 25-136 (230)
8 PF14646 MYCBPAP: MYCBP-associ 93.7 0.43 9.4E-06 45.1 9.3 63 13-75 238-313 (426)
9 PF07610 DUF1573: Protein of u 93.3 0.52 1.1E-05 30.2 6.4 43 28-71 2-45 (45)
10 PRK09926 putative chaperone pr 93.3 1.1 2.3E-05 39.4 10.5 72 6-80 26-107 (246)
11 PRK15249 fimbrial chaperone pr 93.1 1.2 2.5E-05 39.3 10.4 85 6-93 29-124 (253)
12 PRK15211 fimbrial chaperone pr 92.9 3.2 6.9E-05 36.1 12.7 84 7-96 24-113 (229)
13 PRK11385 putativi pili assembl 92.7 1.2 2.7E-05 38.9 9.9 108 7-128 28-147 (236)
14 PRK15299 fimbrial chaperone pr 92.7 3.8 8.3E-05 35.4 12.9 85 6-96 23-115 (227)
15 PF11614 FixG_C: IG-like fold 92.6 0.69 1.5E-05 35.5 7.4 51 24-74 33-85 (118)
16 PRK10132 hypothetical protein; 92.3 0.53 1.1E-05 36.2 6.3 24 217-240 83-106 (108)
17 PF05957 DUF883: Bacterial pro 91.9 0.75 1.6E-05 34.1 6.6 23 219-241 72-94 (94)
18 PRK15246 fimbrial assembly cha 91.5 2.5 5.4E-05 36.8 10.4 85 7-96 12-106 (233)
19 PF06005 DUF904: Protein of un 91.5 0.74 1.6E-05 32.8 5.8 36 171-206 7-42 (72)
20 PRK15290 lfpB fimbrial chapero 91.2 7.7 0.00017 34.1 13.2 110 7-128 39-156 (243)
21 PRK15295 fimbrial assembly cha 91.2 2.9 6.2E-05 36.3 10.3 68 7-80 21-97 (226)
22 PRK15192 fimbrial chaperone Bc 90.6 2.8 6.2E-05 36.6 9.9 105 7-128 24-142 (234)
23 PF10779 XhlA: Haemolysin XhlA 90.1 3.2 6.9E-05 29.2 8.1 19 221-239 53-71 (71)
24 PF06156 DUF972: Protein of un 87.9 1.6 3.5E-05 33.5 5.6 37 172-208 19-55 (107)
25 PRK15208 long polar fimbrial c 87.6 8.6 0.00019 33.3 10.7 71 6-80 22-98 (228)
26 COG3074 Uncharacterized protei 87.0 1.3 2.8E-05 31.3 4.2 35 170-204 27-61 (79)
27 PF02183 HALZ: Homeobox associ 86.4 3.2 6.8E-05 26.8 5.5 35 177-211 7-41 (45)
28 PF06280 DUF1034: Fn3-like dom 86.4 2.3 5E-05 32.3 5.8 54 21-74 7-81 (112)
29 PRK15188 fimbrial chaperone pr 86.4 9.9 0.00021 33.1 10.3 110 7-128 29-144 (228)
30 COG3121 FimC P pilus assembly 86.3 9.5 0.00021 33.2 10.3 84 7-96 29-119 (235)
31 PF04420 CHD5: CHD5-like prote 86.1 0.96 2.1E-05 37.1 3.7 37 176-212 41-89 (161)
32 PRK15195 fimbrial chaperone pr 86.0 8.5 0.00018 33.4 9.8 83 7-93 27-115 (229)
33 PRK15422 septal ring assembly 85.9 1.5 3.3E-05 31.7 4.1 35 170-204 27-61 (79)
34 TIGR03079 CH4_NH3mon_ox_B meth 85.7 2.1 4.6E-05 39.7 6.0 54 20-73 280-354 (399)
35 PRK15254 fimbrial chaperone pr 85.6 12 0.00025 32.8 10.5 71 7-80 18-96 (239)
36 PRK15224 pili assembly chapero 85.1 10 0.00022 33.2 9.9 80 9-96 32-118 (237)
37 PF11120 DUF2636: Protein of u 84.3 0.8 1.7E-05 31.7 2.0 20 221-240 7-26 (62)
38 PRK13169 DNA replication intia 83.5 3.7 8E-05 31.7 5.7 37 172-208 19-55 (110)
39 PRK10404 hypothetical protein; 83.5 6 0.00013 30.0 6.8 24 218-241 78-101 (101)
40 PRK15218 fimbrial chaperone pr 83.5 16 0.00035 31.7 10.3 107 8-128 21-139 (226)
41 smart00809 Alpha_adaptinC2 Ada 83.4 7 0.00015 28.9 7.2 59 14-73 11-73 (104)
42 PF06156 DUF972: Protein of un 83.3 4.8 0.0001 30.9 6.2 43 170-212 10-52 (107)
43 TIGR02449 conserved hypothetic 82.9 4.7 0.0001 28.2 5.4 39 172-210 4-42 (65)
44 PF04744 Monooxygenase_B: Mono 82.7 6.9 0.00015 36.4 8.0 65 7-73 249-335 (381)
45 PF10633 NPCBM_assoc: NPCBM-as 82.6 2.7 5.8E-05 29.8 4.4 55 21-75 4-62 (78)
46 PF02183 HALZ: Homeobox associ 81.7 4.2 9.1E-05 26.2 4.5 37 169-205 6-42 (45)
47 KOG4343 bZIP transcription fac 81.4 4.7 0.0001 39.2 6.6 31 180-210 307-337 (655)
48 PRK13169 DNA replication intia 81.3 6.3 0.00014 30.4 6.2 43 170-212 10-52 (110)
49 PRK10884 SH3 domain-containing 81.0 4.6 0.0001 34.6 5.9 60 172-238 136-195 (206)
50 PRK15285 putative fimbrial cha 81.0 20 0.00043 31.6 10.1 69 9-80 29-105 (250)
51 PRK00888 ftsB cell division pr 81.0 4.2 9.1E-05 31.0 5.2 32 172-203 31-62 (105)
52 PF05377 FlaC_arch: Flagella a 80.5 7 0.00015 26.4 5.4 28 179-206 4-31 (55)
53 PF06005 DUF904: Protein of un 80.0 9.5 0.00021 27.1 6.3 37 170-206 20-56 (72)
54 PRK15233 putative fimbrial cha 80.0 22 0.00048 31.3 10.0 77 12-96 47-130 (246)
55 COG3074 Uncharacterized protei 79.3 6.1 0.00013 28.0 5.0 36 171-206 7-42 (79)
56 smart00340 HALZ homeobox assoc 78.9 7.2 0.00016 24.8 4.7 30 183-212 6-35 (44)
57 PRK15274 putative periplasmic 78.8 28 0.0006 30.9 10.3 83 9-96 30-120 (257)
58 PF15188 CCDC-167: Coiled-coil 78.5 7 0.00015 28.8 5.4 43 187-234 41-83 (85)
59 PRK15422 septal ring assembly 78.4 6.8 0.00015 28.4 5.2 38 170-207 6-43 (79)
60 TIGR03493 cellullose_BcsF cell 77.9 2.5 5.4E-05 29.1 2.7 21 221-241 7-27 (62)
61 PRK15253 putative fimbrial ass 77.6 32 0.0007 30.1 10.3 81 8-96 36-128 (242)
62 COG4467 Regulator of replicati 77.6 7.1 0.00015 30.0 5.3 31 176-206 23-53 (114)
63 PF13807 GNVR: G-rich domain o 76.6 24 0.00052 25.2 7.9 18 221-238 59-76 (82)
64 PF04977 DivIC: Septum formati 76.2 7.5 0.00016 27.2 5.0 29 173-201 22-50 (80)
65 PF05506 DUF756: Domain of unk 75.8 11 0.00023 27.4 5.9 40 25-71 21-65 (89)
66 KOG0860 Synaptobrevin/VAMP-lik 75.5 36 0.00079 26.5 9.6 31 174-204 56-86 (116)
67 PF06072 Herpes_US9: Alphaherp 74.5 3.8 8.2E-05 28.0 2.8 18 222-239 40-57 (60)
68 smart00338 BRLZ basic region l 73.8 11 0.00025 25.6 5.3 35 176-210 27-61 (65)
69 PF02344 Myc-LZ: Myc leucine z 73.8 14 0.00029 22.0 4.7 26 185-210 4-29 (32)
70 PF00927 Transglut_C: Transglu 73.6 14 0.0003 27.6 6.2 56 19-74 12-77 (107)
71 COG4575 ElaB Uncharacterized c 71.1 21 0.00045 27.3 6.4 25 217-241 80-104 (104)
72 PF02883 Alpha_adaptinC2: Adap 70.9 17 0.00036 27.4 6.2 54 20-73 22-79 (115)
73 PRK00523 hypothetical protein; 70.5 4 8.6E-05 29.1 2.3 23 218-240 5-27 (72)
74 PF00170 bZIP_1: bZIP transcri 70.4 16 0.00035 24.8 5.4 34 176-209 27-60 (64)
75 PF02753 PapD_C: Pili assembly 70.1 4 8.6E-05 28.0 2.3 43 28-70 1-44 (68)
76 PRK01844 hypothetical protein; 69.2 4.1 8.9E-05 29.0 2.1 22 219-240 5-26 (72)
77 PF06030 DUF916: Bacterial pro 66.3 60 0.0013 25.2 8.7 29 15-43 20-48 (121)
78 PRK00888 ftsB cell division pr 65.9 12 0.00026 28.5 4.4 35 176-210 28-62 (105)
79 PF01166 TSC22: TSC-22/dip/bun 65.9 19 0.00041 24.6 4.7 28 176-203 15-42 (59)
80 PF11611 DUF4352: Domain of un 65.2 30 0.00065 25.9 6.6 53 21-73 35-101 (123)
81 KOG3119 Basic region leucine z 64.7 16 0.00034 32.6 5.5 41 172-212 212-252 (269)
82 PF10482 CtIP_N: Tumour-suppre 63.8 14 0.0003 28.7 4.2 27 179-205 93-119 (120)
83 PF07716 bZIP_2: Basic region 63.1 19 0.00041 23.7 4.4 27 183-209 26-52 (54)
84 PF04102 SlyX: SlyX; InterPro 62.3 31 0.00067 24.1 5.6 42 171-212 7-48 (69)
85 COG4467 Regulator of replicati 61.5 27 0.00058 26.9 5.4 43 170-212 10-52 (114)
86 PF04880 NUDE_C: NUDE protein, 61.1 8 0.00017 32.1 2.7 11 173-183 5-15 (166)
87 KOG4196 bZIP transcription fac 61.1 24 0.00051 28.1 5.2 35 172-206 78-112 (135)
88 TIGR02209 ftsL_broad cell divi 60.8 25 0.00054 25.0 5.1 30 177-206 26-55 (85)
89 PF11346 DUF3149: Protein of u 60.5 9.3 0.0002 24.3 2.3 20 222-241 18-37 (42)
90 PF00553 CBM_2: Cellulose bind 60.5 18 0.00039 26.9 4.4 50 24-73 15-84 (101)
91 smart00338 BRLZ basic region l 60.0 23 0.00049 24.1 4.5 29 182-210 26-54 (65)
92 PF07716 bZIP_2: Basic region 59.8 34 0.00073 22.5 5.2 31 174-204 24-54 (54)
93 PF04977 DivIC: Septum formati 59.6 16 0.00034 25.5 3.8 33 176-208 18-50 (80)
94 TIGR02745 ccoG_rdxA_fixG cytoc 59.3 63 0.0014 30.9 8.8 52 23-74 347-400 (434)
95 PF00170 bZIP_1: bZIP transcri 58.9 27 0.00058 23.7 4.7 32 172-203 30-61 (64)
96 PF05377 FlaC_arch: Flagella a 58.6 38 0.00082 22.9 5.2 35 171-205 3-37 (55)
97 PRK00736 hypothetical protein; 58.3 38 0.00082 23.7 5.4 40 171-210 8-47 (68)
98 smart00637 CBD_II CBD_II domai 58.2 55 0.0012 23.6 6.6 48 24-71 8-75 (92)
99 TIGR03752 conj_TIGR03752 integ 57.9 23 0.00049 34.1 5.5 27 176-202 67-93 (472)
100 TIGR03142 cytochro_ccmI cytoch 57.3 44 0.00095 25.7 6.2 21 218-238 92-112 (117)
101 PRK00295 hypothetical protein; 57.3 40 0.00088 23.5 5.4 39 171-209 8-46 (68)
102 PF14775 NYD-SP28_assoc: Sperm 55.9 26 0.00056 24.0 4.1 28 176-203 27-54 (60)
103 PF14235 DUF4337: Domain of un 55.7 43 0.00093 27.4 6.2 27 178-204 69-95 (157)
104 PF03302 VSP: Giardia variant- 55.6 6.6 0.00014 36.9 1.6 24 217-240 370-394 (397)
105 PRK14127 cell division protein 55.3 37 0.00081 26.1 5.4 35 177-211 32-66 (109)
106 KOG4343 bZIP transcription fac 54.3 19 0.0004 35.2 4.3 29 183-211 303-331 (655)
107 PF07334 IFP_35_N: Interferon- 54.0 30 0.00065 24.9 4.3 26 185-210 3-28 (76)
108 TIGR02449 conserved hypothetic 53.6 46 0.00099 23.2 5.1 37 170-206 16-52 (65)
109 COG3763 Uncharacterized protei 53.4 14 0.0003 26.2 2.5 20 221-240 7-26 (71)
110 PF07963 N_methyl: Prokaryotic 53.4 19 0.0004 19.2 2.4 18 217-234 1-19 (20)
111 PRK04325 hypothetical protein; 53.3 49 0.0011 23.5 5.4 41 170-210 11-51 (74)
112 PF05753 TRAP_beta: Translocon 52.8 80 0.0017 26.4 7.5 53 20-73 36-97 (181)
113 PF03173 CHB_HEX: Putative car 52.7 18 0.00039 29.9 3.5 34 40-73 69-104 (164)
114 PRK04406 hypothetical protein; 52.6 51 0.0011 23.5 5.4 42 170-211 13-54 (75)
115 PF10224 DUF2205: Predicted co 52.6 30 0.00064 25.2 4.2 40 169-208 24-63 (80)
116 PF04728 LPP: Lipoprotein leuc 52.4 67 0.0014 21.8 5.6 32 173-204 8-39 (56)
117 PF07106 TBPIP: Tat binding pr 51.8 38 0.00082 27.6 5.4 21 172-192 83-103 (169)
118 COG5547 Small integral membran 51.7 17 0.00038 24.7 2.7 19 222-240 33-51 (62)
119 PF09738 DUF2051: Double stran 51.6 53 0.0011 29.8 6.6 37 170-206 86-122 (302)
120 PF13473 Cupredoxin_1: Cupredo 51.4 87 0.0019 23.0 6.9 53 8-72 31-83 (104)
121 PF08232 Striatin: Striatin fa 50.7 46 0.001 26.4 5.5 28 176-203 26-53 (134)
122 PF13600 DUF4140: N-terminal d 50.5 35 0.00077 25.3 4.6 30 177-206 72-101 (104)
123 PF12690 BsuPI: Intracellular 50.4 86 0.0019 22.6 6.4 21 24-44 2-22 (82)
124 PRK02793 phi X174 lysis protei 50.2 54 0.0012 23.1 5.2 40 171-210 11-50 (72)
125 PF13544 N_methyl_2: Type IV p 50.1 17 0.00038 21.3 2.2 18 215-232 12-30 (31)
126 PRK09039 hypothetical protein; 49.7 35 0.00075 31.4 5.3 35 172-206 127-161 (343)
127 PRK02119 hypothetical protein; 49.2 63 0.0014 22.9 5.4 40 171-210 12-51 (73)
128 PF12777 MT: Microtubule-bindi 49.0 37 0.0008 31.1 5.4 35 172-206 239-273 (344)
129 TIGR02532 IV_pilin_GFxxxE prep 48.3 33 0.00072 19.2 3.1 21 217-237 2-23 (26)
130 COG2991 Uncharacterized protei 48.1 20 0.00043 25.6 2.6 18 223-240 9-26 (77)
131 PF06645 SPC12: Microsomal sig 47.8 18 0.00039 25.9 2.4 19 221-239 14-32 (76)
132 TIGR03752 conj_TIGR03752 integ 46.9 28 0.00062 33.5 4.3 23 172-194 70-92 (472)
133 KOG3488 Dolichol phosphate-man 46.7 19 0.00042 25.5 2.4 23 219-241 52-75 (81)
134 PF10205 KLRAQ: Predicted coil 46.5 63 0.0014 24.6 5.3 36 171-206 29-64 (102)
135 PRK13729 conjugal transfer pil 46.3 37 0.0008 32.7 5.0 40 172-211 80-119 (475)
136 PRK00846 hypothetical protein; 45.9 76 0.0017 22.9 5.4 40 171-210 16-55 (77)
137 PF04728 LPP: Lipoprotein leuc 45.9 86 0.0019 21.2 5.3 35 172-206 14-48 (56)
138 PRK15308 putative fimbrial pro 45.7 1.6E+02 0.0035 25.7 8.5 83 6-96 17-117 (234)
139 PF04111 APG6: Autophagy prote 45.4 52 0.0011 29.9 5.6 15 223-237 171-185 (314)
140 COG4026 Uncharacterized protei 45.0 56 0.0012 28.6 5.4 10 61-70 31-40 (290)
141 PRK00523 hypothetical protein; 45.0 27 0.00058 24.9 2.9 21 219-239 2-22 (72)
142 PF12709 Kinetocho_Slk19: Cent 44.9 63 0.0014 23.9 4.9 29 181-209 48-76 (87)
143 PF13815 Dzip-like_N: Iguana/D 44.6 42 0.00091 25.8 4.3 36 175-210 80-115 (118)
144 PF01763 Herpes_UL6: Herpesvir 44.6 1.2E+02 0.0025 30.1 8.2 42 171-212 366-407 (557)
145 PF04999 FtsL: Cell division p 43.6 66 0.0014 23.5 5.1 30 177-206 37-66 (97)
146 PF07407 Seadorna_VP6: Seadorn 43.4 37 0.00081 31.2 4.3 20 172-191 43-62 (420)
147 PRK13922 rod shape-determining 43.2 55 0.0012 28.8 5.4 32 179-210 73-107 (276)
148 PF13815 Dzip-like_N: Iguana/D 43.1 71 0.0015 24.6 5.4 34 171-204 83-116 (118)
149 PF01166 TSC22: TSC-22/dip/bun 41.8 51 0.0011 22.5 3.7 30 183-212 15-44 (59)
150 KOG0977 Nuclear envelope prote 41.7 53 0.0011 32.3 5.3 42 170-211 150-191 (546)
151 PF11906 DUF3426: Protein of u 41.6 1.1E+02 0.0023 24.2 6.4 53 21-73 67-136 (149)
152 PF03908 Sec20: Sec20; InterP 41.4 1.4E+02 0.003 21.8 7.6 16 225-240 75-90 (92)
153 COG3121 FimC P pilus assembly 41.0 67 0.0014 27.9 5.5 43 26-70 165-209 (235)
154 COG4317 Uncharacterized protei 40.6 25 0.00054 25.8 2.2 16 223-238 30-45 (93)
155 PF09753 Use1: Membrane fusion 40.4 1.7E+02 0.0037 25.4 8.0 22 217-238 226-247 (251)
156 TIGR00219 mreC rod shape-deter 40.1 68 0.0015 28.7 5.5 35 172-206 70-108 (283)
157 PF08172 CASP_C: CASP C termin 39.9 60 0.0013 28.6 5.0 35 171-205 96-130 (248)
158 PF04111 APG6: Autophagy prote 39.6 69 0.0015 29.1 5.5 16 222-237 177-192 (314)
159 PRK14750 kdpF potassium-transp 39.5 48 0.0011 19.3 2.9 18 221-238 3-20 (29)
160 PF13205 Big_5: Bacterial Ig-l 39.3 1.4E+02 0.0031 21.4 6.9 56 13-71 26-84 (107)
161 PRK13922 rod shape-determining 38.6 76 0.0017 27.9 5.6 37 170-206 71-110 (276)
162 PF12718 Tropomyosin_1: Tropom 38.3 86 0.0019 25.1 5.3 40 171-210 17-56 (143)
163 KOG4196 bZIP transcription fac 38.2 1.1E+02 0.0023 24.5 5.5 31 179-209 78-108 (135)
164 KOG0709 CREB/ATF family transc 38.1 56 0.0012 31.4 4.7 28 176-203 287-314 (472)
165 PRK13673 hypothetical protein; 37.9 64 0.0014 25.2 4.3 34 204-238 78-111 (118)
166 PF06612 DUF1146: Protein of u 37.8 40 0.00087 22.0 2.7 21 219-239 24-44 (48)
167 KOG4797 Transcriptional regula 37.5 1E+02 0.0022 23.8 5.2 19 183-201 75-93 (123)
168 PF07798 DUF1640: Protein of u 37.4 2.3E+02 0.005 23.2 8.0 14 225-238 161-174 (177)
169 cd00632 Prefoldin_beta Prefold 37.4 84 0.0018 23.5 4.9 38 171-208 66-103 (105)
170 PHA02657 hypothetical protein; 37.1 30 0.00065 25.5 2.2 20 221-240 31-50 (95)
171 PF10498 IFT57: Intra-flagella 36.4 1E+02 0.0023 28.6 6.2 49 171-222 283-331 (359)
172 TIGR02736 cbb3_Q_epsi cytochro 36.3 38 0.00082 22.9 2.4 17 223-239 5-21 (56)
173 TIGR02894 DNA_bind_RsfA transc 36.2 1E+02 0.0023 25.4 5.5 21 186-206 108-128 (161)
174 PF10883 DUF2681: Protein of u 36.0 93 0.002 23.0 4.7 31 176-206 24-54 (87)
175 PRK15249 fimbrial chaperone pr 36.0 84 0.0018 27.6 5.3 42 27-69 177-219 (253)
176 PRK09413 IS2 repressor TnpA; R 35.8 74 0.0016 24.4 4.5 26 180-205 76-101 (121)
177 PF08826 DMPK_coil: DMPK coile 35.8 82 0.0018 21.7 4.1 11 196-206 39-49 (61)
178 PF14197 Cep57_CLD_2: Centroso 35.7 1.2E+02 0.0026 21.2 5.1 11 199-209 50-60 (69)
179 PF07705 CARDB: CARDB; InterP 35.6 1.4E+02 0.0031 21.0 5.8 55 20-74 17-72 (101)
180 PF14257 DUF4349: Domain of un 35.6 1.3E+02 0.0028 26.2 6.5 29 183-211 163-191 (262)
181 PF01105 EMP24_GP25L: emp24/gp 35.4 11 0.00024 30.1 -0.3 22 218-239 158-179 (183)
182 PF11027 DUF2615: Protein of u 35.4 55 0.0012 25.0 3.5 23 217-239 51-73 (103)
183 PRK03947 prefoldin subunit alp 35.2 1.1E+02 0.0025 23.9 5.6 39 172-210 98-136 (140)
184 PF12768 Rax2: Cortical protei 35.2 33 0.00072 30.7 2.7 21 220-240 237-257 (281)
185 PF08826 DMPK_coil: DMPK coile 35.1 1.5E+02 0.0032 20.4 5.4 28 175-209 32-59 (61)
186 PF06305 DUF1049: Protein of u 35.1 49 0.0011 22.4 3.0 21 187-207 46-66 (68)
187 COG4026 Uncharacterized protei 35.0 77 0.0017 27.7 4.7 8 65-72 7-14 (290)
188 PF06483 ChiC: Chitinase C; I 35.0 48 0.001 27.8 3.3 25 36-71 116-140 (180)
189 PF14796 AP3B1_C: Clathrin-ada 34.9 1.7E+02 0.0037 23.7 6.5 59 13-71 72-138 (145)
190 PF10031 DUF2273: Small integr 34.7 49 0.0011 21.8 2.8 19 221-239 32-50 (51)
191 KOG0972 Huntingtin interacting 34.6 1.2E+02 0.0026 27.7 5.9 48 172-222 291-338 (384)
192 KOG1962 B-cell receptor-associ 34.5 86 0.0019 27.1 5.0 14 179-192 155-168 (216)
193 PF10473 CENP-F_leu_zip: Leuci 34.3 1.4E+02 0.003 24.1 5.8 33 172-204 56-88 (140)
194 PF04325 DUF465: Protein of un 34.2 1.3E+02 0.0028 19.3 5.3 35 175-209 6-47 (49)
195 PF04201 TPD52: Tumour protein 33.9 84 0.0018 26.0 4.6 35 170-204 31-65 (162)
196 PF01102 Glycophorin_A: Glycop 33.9 39 0.00084 26.6 2.6 18 223-240 73-90 (122)
197 PRK13729 conjugal transfer pil 33.7 77 0.0017 30.6 5.0 25 182-206 97-121 (475)
198 PF11772 EpuA: DNA-directed RN 33.5 25 0.00055 22.9 1.2 14 224-237 4-17 (47)
199 PF05529 Bap31: B-cell recepto 33.5 97 0.0021 25.7 5.1 23 189-211 161-183 (192)
200 PRK09239 chorismate mutase; Pr 33.5 1.3E+02 0.0029 22.7 5.4 32 171-202 13-44 (104)
201 PF10342 GPI-anchored: Ser-Thr 33.2 1.7E+02 0.0038 20.5 7.1 59 12-71 15-78 (93)
202 PRK10803 tol-pal system protei 32.9 1E+02 0.0022 27.2 5.4 30 172-201 58-87 (263)
203 PF09640 DUF2027: Domain of un 32.9 75 0.0016 26.2 4.1 67 24-97 18-84 (162)
204 KOG1962 B-cell receptor-associ 32.8 67 0.0014 27.8 4.0 8 194-201 198-205 (216)
205 COG2919 Septum formation initi 32.6 1E+02 0.0022 23.7 4.7 29 176-204 58-86 (117)
206 PF11180 DUF2968: Protein of u 32.6 1.5E+02 0.0033 25.1 6.0 33 179-211 151-183 (192)
207 KOG4005 Transcription factor X 32.6 1.9E+02 0.0042 25.5 6.7 30 172-201 87-116 (292)
208 PF11932 DUF3450: Protein of u 32.5 1.1E+02 0.0024 26.6 5.5 23 179-201 53-75 (251)
209 TIGR01801 CM_A chorismate muta 32.5 2.2E+02 0.0047 21.4 8.2 32 171-202 7-38 (102)
210 PF06716 DUF1201: Protein of u 32.5 64 0.0014 21.0 2.9 18 221-238 11-28 (54)
211 PF04678 DUF607: Protein of un 32.4 2.4E+02 0.0052 23.3 7.3 12 226-237 128-139 (180)
212 KOG4005 Transcription factor X 32.4 93 0.002 27.4 4.8 28 172-199 94-121 (292)
213 PF03980 Nnf1: Nnf1 ; InterPr 32.4 1.2E+02 0.0026 22.7 5.1 30 181-210 79-108 (109)
214 COG0598 CorA Mg2+ and Co2+ tra 32.1 2.2E+02 0.0049 25.6 7.6 22 218-240 297-318 (322)
215 PF11544 Spc42p: Spindle pole 32.0 1.9E+02 0.0041 20.9 5.5 36 175-210 19-54 (76)
216 PRK14748 kdpF potassium-transp 31.9 74 0.0016 18.5 2.8 16 223-238 5-20 (29)
217 COG3883 Uncharacterized protei 31.9 1.1E+02 0.0024 27.3 5.3 30 173-202 57-86 (265)
218 TIGR02656 cyanin_plasto plasto 31.9 1.7E+02 0.0036 21.4 5.7 61 5-71 10-76 (99)
219 PRK14127 cell division protein 31.3 1.6E+02 0.0035 22.6 5.5 37 172-208 34-70 (109)
220 PF08946 Osmo_CC: Osmosensory 31.2 84 0.0018 20.3 3.3 20 175-194 19-38 (46)
221 PF01920 Prefoldin_2: Prefoldi 31.2 1.1E+02 0.0025 22.2 4.7 34 172-205 66-99 (106)
222 COG1422 Predicted membrane pro 31.1 1.2E+02 0.0025 26.0 5.1 23 175-197 72-94 (201)
223 TIGR03689 pup_AAA proteasome A 30.6 86 0.0019 30.6 4.9 40 172-211 5-44 (512)
224 COG3771 Predicted membrane pro 30.5 55 0.0012 24.3 2.7 21 219-239 39-60 (97)
225 PHA02849 putative transmembran 30.0 61 0.0013 23.5 2.8 19 221-239 21-39 (82)
226 PRK15295 fimbrial assembly cha 29.9 1.3E+02 0.0028 26.0 5.4 39 27-69 158-197 (226)
227 PRK02898 cobalt transport prot 29.9 32 0.00069 26.1 1.4 20 220-239 68-87 (100)
228 PF08961 DUF1875: Domain of un 29.5 18 0.00039 31.4 0.0 38 171-208 125-162 (243)
229 PRK15192 fimbrial chaperone Bc 29.3 1.3E+02 0.0028 26.2 5.3 38 28-69 164-202 (234)
230 COG1730 GIM5 Predicted prefold 29.3 1.2E+02 0.0026 24.5 4.8 38 172-209 98-135 (145)
231 PRK11637 AmiB activator; Provi 29.2 1.7E+02 0.0036 27.5 6.5 25 178-202 92-116 (428)
232 PF08138 Sex_peptide: Sex pept 29.1 18 0.0004 24.2 0.0 18 219-236 3-20 (56)
233 PF07106 TBPIP: Tat binding pr 29.0 1.5E+02 0.0033 24.0 5.5 16 194-209 121-136 (169)
234 PF11688 DUF3285: Protein of u 29.0 88 0.0019 20.1 3.1 15 222-236 26-40 (45)
235 PF14235 DUF4337: Domain of un 29.0 3.1E+02 0.0067 22.3 7.2 37 172-208 70-106 (157)
236 PF10883 DUF2681: Protein of u 28.9 1.8E+02 0.004 21.4 5.3 21 177-197 32-52 (87)
237 PTZ00382 Variant-specific surf 28.9 30 0.00066 25.9 1.2 24 217-240 69-93 (96)
238 TIGR01167 LPXTG_anchor LPXTG-m 28.6 1.1E+02 0.0024 17.6 3.4 20 219-239 10-29 (34)
239 KOG0728 26S proteasome regulat 28.5 1.2E+02 0.0025 27.5 4.9 40 172-211 28-67 (404)
240 PRK07075 isochorismate-pyruvat 28.4 2.5E+02 0.0055 20.9 7.7 33 170-202 10-42 (101)
241 PRK15246 fimbrial assembly cha 28.4 1.4E+02 0.003 25.9 5.4 39 27-69 154-192 (233)
242 PF12958 DUF3847: Protein of u 28.2 2.2E+02 0.0048 20.9 5.6 30 177-206 3-32 (86)
243 PRK06034 hypothetical protein; 28.1 3.4E+02 0.0073 24.4 7.8 34 170-203 11-44 (279)
244 TIGR02338 gimC_beta prefoldin, 28.0 1.6E+02 0.0034 22.2 5.1 36 171-206 70-105 (110)
245 PF05308 Mito_fiss_reg: Mitoch 27.8 87 0.0019 27.7 4.0 24 178-201 118-141 (253)
246 PRK09413 IS2 repressor TnpA; R 27.8 1.6E+02 0.0034 22.5 5.1 29 184-212 73-101 (121)
247 PTZ00454 26S protease regulato 27.7 1.2E+02 0.0026 28.5 5.1 39 172-210 26-64 (398)
248 TIGR01242 26Sp45 26S proteasom 27.7 1.2E+02 0.0025 27.8 5.1 38 173-210 4-41 (364)
249 PF12709 Kinetocho_Slk19: Cent 27.5 1.7E+02 0.0037 21.6 4.9 24 187-210 47-70 (87)
250 PF12325 TMF_TATA_bd: TATA ele 27.4 3E+02 0.0065 21.4 7.0 29 176-204 24-52 (120)
251 PRK07857 hypothetical protein; 27.1 2.2E+02 0.0048 21.8 5.6 32 171-202 31-62 (106)
252 KOG0860 Synaptobrevin/VAMP-lik 27.1 1.8E+02 0.0039 22.7 5.2 14 225-238 101-114 (116)
253 PRK09926 putative chaperone pr 27.0 1.9E+02 0.004 25.3 6.0 43 26-70 173-217 (246)
254 PRK10722 hypothetical protein; 26.9 1.7E+02 0.0036 25.9 5.5 18 188-205 175-192 (247)
255 KOG4112 Signal peptidase subun 26.9 72 0.0016 24.0 2.8 20 219-238 27-46 (101)
256 PF08317 Spc7: Spc7 kinetochor 26.8 1.5E+02 0.0032 27.0 5.5 12 174-185 215-226 (325)
257 COG4965 TadB Flp pilus assembl 26.8 2.4E+02 0.0051 25.8 6.7 24 176-206 219-242 (309)
258 COG2919 Septum formation initi 26.6 1E+02 0.0022 23.7 3.8 37 175-211 50-86 (117)
259 KOG4797 Transcriptional regula 26.6 2.2E+02 0.0048 22.0 5.5 28 183-210 68-95 (123)
260 PRK05771 V-type ATP synthase s 26.6 1.2E+02 0.0025 30.4 5.1 34 176-209 94-127 (646)
261 PF05542 DUF760: Protein of un 26.5 41 0.00089 24.5 1.5 19 222-240 56-74 (86)
262 PF08402 TOBE_2: TOBE domain; 26.3 2E+02 0.0042 18.9 7.5 66 7-72 1-70 (75)
263 PF11365 DUF3166: Protein of u 26.2 2.1E+02 0.0045 21.5 5.2 41 172-212 5-45 (96)
264 TIGR02894 DNA_bind_RsfA transc 26.0 1.7E+02 0.0037 24.1 5.1 28 176-203 112-139 (161)
265 PRK14160 heat shock protein Gr 26.0 1.7E+02 0.0036 25.3 5.3 35 176-210 62-96 (211)
266 KOG3865 Arrestin [Signal trans 26.0 97 0.0021 28.6 4.0 69 1-73 190-276 (402)
267 KOG0980 Actin-binding protein 25.9 1.6E+02 0.0034 30.8 5.8 21 105-128 262-282 (980)
268 PF10224 DUF2205: Predicted co 25.8 2.4E+02 0.0051 20.5 5.3 39 172-210 20-58 (80)
269 TIGR02209 ftsL_broad cell divi 25.7 1.2E+02 0.0025 21.4 3.8 31 172-202 28-58 (85)
270 KOG4253 Tryptophan-rich basic 25.7 2.5E+02 0.0054 23.2 5.9 17 176-192 45-61 (175)
271 PF02038 ATP1G1_PLM_MAT8: ATP1 25.7 75 0.0016 21.0 2.4 14 221-234 19-32 (50)
272 PF15058 Speriolin_N: Sperioli 25.7 98 0.0021 26.3 3.7 27 177-203 7-33 (200)
273 PF14054 DUF4249: Domain of un 25.6 3.2E+02 0.007 23.7 7.4 50 23-73 60-110 (298)
274 PRK11637 AmiB activator; Provi 25.4 2.7E+02 0.0058 26.2 7.2 29 175-203 96-124 (428)
275 PF06376 DUF1070: Protein of u 25.0 84 0.0018 19.1 2.4 18 222-239 17-34 (34)
276 PF08277 PAN_3: PAN-like domai 25.0 1.1E+02 0.0024 20.6 3.5 19 24-42 53-71 (71)
277 PF08172 CASP_C: CASP C termin 25.0 1.5E+02 0.0032 26.2 4.9 34 171-204 89-122 (248)
278 cd07429 Cby_like Chibby, a nuc 24.9 1.6E+02 0.0034 22.7 4.5 23 184-206 74-96 (108)
279 TIGR02327 int_mem_ywzB conserv 24.9 76 0.0016 22.3 2.5 21 219-239 31-51 (68)
280 PRK14163 heat shock protein Gr 24.9 2.2E+02 0.0047 24.6 5.8 23 172-194 44-66 (214)
281 PF02996 Prefoldin: Prefoldin 24.7 1.6E+02 0.0036 22.0 4.7 34 174-207 83-116 (120)
282 KOG4010 Coiled-coil protein TP 24.5 3.3E+02 0.0071 23.2 6.5 24 170-193 46-69 (208)
283 PF01299 Lamp: Lysosome-associ 24.3 54 0.0012 29.4 2.2 17 225-241 281-297 (306)
284 PF11668 Gp_UL130: HCMV glycop 24.3 1.9E+02 0.0042 23.5 5.0 43 14-56 102-154 (156)
285 PF08614 ATG16: Autophagy prot 24.2 1.9E+02 0.0042 24.0 5.4 26 176-201 110-135 (194)
286 KOG1769 Ubiquitin-like protein 24.2 94 0.002 23.5 3.0 25 24-48 19-43 (99)
287 PF03168 LEA_2: Late embryogen 24.2 1.7E+02 0.0038 20.6 4.6 45 27-71 1-51 (101)
288 PF05103 DivIVA: DivIVA protei 24.1 89 0.0019 23.8 3.1 25 177-201 27-51 (131)
289 PF02285 COX8: Cytochrome oxid 24.1 1.1E+02 0.0024 19.7 2.9 17 223-239 17-35 (44)
290 TIGR01005 eps_transp_fam exopo 24.1 5.3E+02 0.011 26.1 9.4 13 223-235 433-445 (754)
291 PF07544 Med9: RNA polymerase 24.1 2.6E+02 0.0056 20.1 5.4 18 171-188 31-48 (83)
292 PRK15224 pili assembly chapero 24.0 1.9E+02 0.0041 25.2 5.4 39 27-69 170-209 (237)
293 PF12808 Mto2_bdg: Micro-tubul 24.0 1.7E+02 0.0037 19.4 3.9 23 179-208 26-48 (52)
294 PF15290 Syntaphilin: Golgi-lo 23.9 2.1E+02 0.0047 25.8 5.7 41 170-210 91-138 (305)
295 COG2841 Uncharacterized protei 23.6 2.5E+02 0.0054 19.9 4.9 18 189-206 46-63 (72)
296 PRK02119 hypothetical protein; 23.6 2.4E+02 0.0052 19.9 5.0 33 176-208 24-56 (73)
297 PF14645 Chibby: Chibby family 23.6 1.6E+02 0.0035 22.8 4.4 21 184-204 73-93 (116)
298 PF10473 CENP-F_leu_zip: Leuci 23.5 2E+02 0.0044 23.1 5.1 26 181-206 51-76 (140)
299 cd06409 PB1_MUG70 The MUG70 pr 23.5 52 0.0011 24.2 1.5 22 39-60 2-25 (86)
300 KOG3650 Predicted coiled-coil 23.3 2.2E+02 0.0047 21.7 4.8 39 170-208 65-103 (120)
301 PF08781 DP: Transcription fac 23.3 2E+02 0.0044 23.2 5.0 29 173-201 6-34 (142)
302 PHA02047 phage lambda Rz1-like 23.3 3.3E+02 0.0072 20.5 7.1 37 170-206 36-72 (101)
303 PF04201 TPD52: Tumour protein 23.2 2.2E+02 0.0047 23.6 5.2 37 176-212 30-66 (162)
304 smart00605 CW CW domain. 23.1 1E+02 0.0022 22.4 3.1 22 27-48 58-80 (94)
305 PF05529 Bap31: B-cell recepto 23.0 1.1E+02 0.0024 25.3 3.7 35 176-210 155-189 (192)
306 PF06698 DUF1192: Protein of u 23.0 1.8E+02 0.0038 19.9 3.9 20 178-197 24-43 (59)
307 COG5415 Predicted integral mem 22.9 5.1E+02 0.011 22.5 7.6 22 217-238 65-86 (251)
308 PF13600 DUF4140: N-terminal d 22.7 1.1E+02 0.0025 22.5 3.4 30 172-201 74-103 (104)
309 PF09125 COX2-transmemb: Cytoc 22.6 1.1E+02 0.0023 19.0 2.5 21 219-239 16-36 (38)
310 PF07297 DPM2: Dolichol phosph 22.5 1E+02 0.0023 22.2 2.9 20 222-241 54-73 (78)
311 PF04899 MbeD_MobD: MbeD/MobD 22.5 2.4E+02 0.0052 19.9 4.7 30 176-205 29-58 (70)
312 PF09304 Cortex-I_coil: Cortex 22.5 3.1E+02 0.0068 21.0 5.6 36 171-206 33-68 (107)
313 KOG3208 SNARE protein GS28 [In 22.4 4.4E+02 0.0096 23.0 7.1 22 216-237 209-230 (231)
314 PRK11385 putativi pili assembl 22.4 2.2E+02 0.0048 24.8 5.5 39 27-69 168-207 (236)
315 PF11382 DUF3186: Protein of u 22.3 1.3E+02 0.0027 27.3 4.1 22 183-204 40-61 (308)
316 PRK06285 chorismate mutase; Pr 22.2 3E+02 0.0064 20.2 5.5 34 170-203 9-42 (96)
317 COG2433 Uncharacterized conser 22.0 2E+02 0.0044 28.8 5.6 19 56-74 210-228 (652)
318 PF13870 DUF4201: Domain of un 21.9 2.6E+02 0.0056 22.8 5.6 35 175-209 98-132 (177)
319 PRK09343 prefoldin subunit bet 21.9 3.4E+02 0.0073 20.9 6.0 38 172-209 75-112 (121)
320 TIGR01801 CM_A chorismate muta 21.7 3.3E+02 0.0072 20.4 5.7 36 176-211 5-40 (102)
321 PF01025 GrpE: GrpE; InterPro 21.7 2.8E+02 0.0061 22.1 5.8 31 172-202 15-45 (165)
322 PF08614 ATG16: Autophagy prot 21.6 2.3E+02 0.0049 23.6 5.3 34 173-206 121-154 (194)
323 PHA03385 IX capsid protein IX, 21.6 2.3E+02 0.0049 22.4 4.8 30 184-213 102-131 (135)
324 PF12606 RELT: Tumour necrosis 21.6 1.2E+02 0.0026 20.0 2.8 18 222-239 8-25 (50)
325 KOG3863 bZIP transcription fac 21.5 1.8E+02 0.0039 29.1 5.2 35 177-211 513-547 (604)
326 PF14257 DUF4349: Domain of un 21.4 2.3E+02 0.0051 24.5 5.6 28 179-206 166-193 (262)
327 PRK14140 heat shock protein Gr 21.4 2.6E+02 0.0056 23.6 5.6 19 172-190 41-59 (191)
328 PF11859 DUF3379: Protein of u 21.4 4.1E+02 0.009 23.2 6.9 21 218-238 76-96 (232)
329 cd00890 Prefoldin Prefoldin is 21.3 2.2E+02 0.0048 21.4 4.9 35 172-206 91-125 (129)
330 PF07233 DUF1425: Protein of u 21.2 3.4E+02 0.0073 19.8 7.8 35 21-55 23-59 (94)
331 PRK11876 petM cytochrome b6-f 21.1 1.3E+02 0.0029 17.9 2.7 18 223-240 11-28 (32)
332 PF14077 WD40_alt: Alternative 20.9 89 0.0019 20.3 2.0 19 183-201 19-37 (48)
333 PF11932 DUF3450: Protein of u 20.9 3.5E+02 0.0075 23.4 6.5 42 170-211 51-92 (251)
334 PF06160 EzrA: Septation ring 20.9 3.5E+02 0.0076 26.6 7.2 61 171-231 389-450 (560)
335 PF08232 Striatin: Striatin fa 20.8 3.3E+02 0.0071 21.5 5.8 37 170-206 27-63 (134)
336 PF09726 Macoilin: Transmembra 20.8 2.8E+02 0.0061 28.2 6.5 36 175-210 545-580 (697)
337 PF05103 DivIVA: DivIVA protei 20.7 46 0.00099 25.5 0.8 28 179-206 22-49 (131)
338 TIGR03017 EpsF chain length de 20.6 6.2E+02 0.013 23.5 8.6 10 118-127 131-140 (444)
339 PRK15218 fimbrial chaperone pr 20.6 2.3E+02 0.005 24.5 5.2 40 27-69 160-199 (226)
340 PF01544 CorA: CorA-like Mg2+ 20.6 2.9E+02 0.0062 23.7 6.0 17 224-240 276-292 (292)
341 KOG1666 V-SNARE [Intracellular 20.4 2.9E+02 0.0062 24.0 5.6 11 193-203 157-167 (220)
342 PF10186 Atg14: UV radiation r 20.4 2.4E+02 0.0052 24.5 5.5 13 177-189 72-84 (302)
343 PF08781 DP: Transcription fac 20.4 76 0.0016 25.6 2.0 20 183-202 2-21 (142)
344 PF10498 IFT57: Intra-flagella 20.3 2.8E+02 0.006 25.8 6.0 28 192-219 269-296 (359)
345 PF03962 Mnd1: Mnd1 family; I 20.2 2.7E+02 0.0058 23.3 5.4 20 190-209 104-123 (188)
346 PRK15253 putative fimbrial ass 20.2 2.5E+02 0.0055 24.5 5.4 49 13-69 166-215 (242)
347 PF10212 TTKRSYEDQ: Predicted 20.2 3.3E+02 0.0071 26.7 6.6 40 170-209 443-482 (518)
348 PF07664 FeoB_C: Ferrous iron 20.2 1.3E+02 0.0027 19.8 2.8 18 223-240 5-22 (54)
349 PF04639 Baculo_E56: Baculovir 20.2 77 0.0017 28.6 2.2 24 217-240 276-299 (305)
350 KOG3620 Uncharacterized conser 20.1 2.5E+02 0.0055 30.6 6.1 78 6-89 526-609 (1626)
351 PF04880 NUDE_C: NUDE protein, 20.1 68 0.0015 26.6 1.7 19 180-198 29-47 (166)
352 PRK15299 fimbrial chaperone pr 20.0 2.2E+02 0.0048 24.4 5.0 39 27-69 161-200 (227)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.7e-31 Score=222.39 Aligned_cols=119 Identities=34% Similarity=0.622 Sum_probs=110.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCC-CCCCCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP-PDMQCKD 85 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p-~~~~~kd 85 (241)
|+|+| ++.|..|+.+..++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|||
T Consensus 3 veisp-~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISP-QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecC-ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 57788 567777999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred eEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeC
Q 026266 86 KFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (241)
Q Consensus 86 KFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~ 127 (241)
|||||+...+.+.+..|+. ++|...++.-|+++||||+|..
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeec
Confidence 9999999999887778884 9999988888999999999983
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-28 Score=208.40 Aligned_cols=133 Identities=47% Similarity=0.741 Sum_probs=118.6
Q ss_pred CCCCcceEEeC-CeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCC
Q 026266 1 MSTGELLSIEP-LELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (241)
Q Consensus 1 m~~~~ll~i~P-~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~ 79 (241)
|+.+.+|.|+| .+|.|.+++++++.+.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|++|++...|.
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~ 82 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP 82 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence 34668999999 59999999999999999999999999999999999999999999999999999999999999877788
Q ss_pred CCCCCCeEEEEEEecCCCCCcccchhhhhcccc--CceeeEEEeEEEEeCCCCCCCCC
Q 026266 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA--GHVVEECKLRVIYVSPPQPPSPV 135 (241)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~--~~~i~~~kL~v~~~~~~~~~s~~ 135 (241)
|++|+|||+||++.++.+ +..++ .++|.... +..+.+.+++|.|..|+.+++..
T Consensus 83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~ 138 (218)
T KOG0439|consen 83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVV 138 (218)
T ss_pred hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcccc
Confidence 989999999999999986 33344 47887665 78899999999999987765544
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.91 E-value=8.5e-24 Score=161.88 Aligned_cols=104 Identities=39% Similarity=0.635 Sum_probs=83.3
Q ss_pred eEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCCC
Q 026266 7 LSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKD 85 (241)
Q Consensus 7 l~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~kd 85 (241)
|.|+|. .|.|..++++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|.||++++|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789997 89999999999999999999999999999999999999999999999999999999999997655433 2399
Q ss_pred eEEEEEEecCCCCC-cccchhhhhccc
Q 026266 86 KFLLQSVKTNDGTT-AKDINAEMFNKE 111 (241)
Q Consensus 86 KFlVqs~~~~~~~~-~~d~~~~~f~~~ 111 (241)
||+|+++.++++.. ..+....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 99999999987653 323334677654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.70 E-value=3.1e-07 Score=69.23 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=61.7
Q ss_pred cceEEeCCeeeEec-cCCCeeeEEEEEEcCCCCeEEEEeeecC--CCceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 5 ELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTN--PKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 5 ~ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~--p~~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
..|+++|.+|.|-. ..+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||++.++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 46899999999954 5678889999999999999999998643 4689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.98 E-value=0.012 Score=45.67 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=71.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecC---C------CceEEeCCCeeeCCCCeEEEEEEecccccC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN---P------KKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~---p------~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~ 77 (241)
|.|+|..+.|... .....++|+|.++.++.+.+.... . ..|.|-|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788999999852 347899999999999999988664 1 2689999999999999999999 4432 33
Q ss_pred CCCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeC
Q 026266 78 PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 127 (241)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~ 127 (241)
|.+....-++.+..++..... .+ .+..-.....+.+++.|.+
T Consensus 77 ~~~~E~~yrl~~~~iP~~~~~--~~------~~~~v~i~~~~~i~v~~rP 118 (122)
T PF00345_consen 77 PIDRESLYRLSFREIPPSEAE--NE------SKNGVQIALRYSIPVFYRP 118 (122)
T ss_dssp -SSS-EEEEEEEEEEESCCTT--SS------SSSEEEEEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEEEeccccc--cc------ccceEEEEEEEEEEEEECc
Confidence 444333344555555544310 00 0111123557777887774
No 6
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.27 E-value=0.012 Score=50.47 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=41.8
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCchHHHH-HHHHHHHHHHHHHh
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNR--GGVSFIFV-ILVGLVGIVLGYVM 238 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~~~~~--~g~~~~~v-~~v~ll~~llgy~~ 238 (241)
.+++.++++....+..|++|.+.+.+|...+++|.+.++.+..... .-+-.|+. .+|+++|+|||.++
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 4556666677777777888888888887777777665544321111 11222222 67777777788775
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=94.19 E-value=0.69 Score=40.17 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=68.0
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCC-----CceEEeCCCeeeCCCCeEEEEEEecccccCCCC
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNP-----KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~ 80 (241)
-|.+.|..+.|... .....++|+|.++.++.-....... .-|.|-|+.-.|+||+...|.|.... ..|.|
T Consensus 25 ~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 36677778888853 3578999999999876666544221 35999999999999999999999875 24544
Q ss_pred CCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 81 MQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 81 ~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
... -|-+-...+|+....+ ..=......++++-|.+.
T Consensus 100 rEs--~f~l~v~~IP~~~~~~---------~~l~ia~r~~iklfyRP~ 136 (230)
T PRK09918 100 TEH--LLRVSFEGVPPKPGGK---------NKVVMPIRQDLPVLIQPA 136 (230)
T ss_pred eeE--EEEEEEEEcCCCCCCC---------CEEEEEEEeEEEEEEeCC
Confidence 222 2444334444321100 001223455777777754
No 8
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=93.75 E-value=0.43 Score=45.10 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=52.1
Q ss_pred eeeEeccCCCeeeEEEE-EEcCCCCeEEEEeeecC------------CCceEEeCCCeeeCCCCeEEEEEEecccc
Q 026266 13 ELKFPFELKKQISCSLQ-LSNKTDNYVAFKVKTTN------------PKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (241)
Q Consensus 13 eL~F~~~~~~~~~~~l~-L~N~s~~~vaFKVKTT~------------p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~ 75 (241)
.|.|.-..+......|. |.|.+..-|-|.-+--. ...|....+.|+|.||++..+.|++++.+
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68888776666666666 99999999999866432 45788999999999999999999999853
No 9
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=93.35 E-value=0.52 Score=30.22 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=35.1
Q ss_pred EEEEcCCCCeE-EEEeeecCCCceEEeCCCeeeCCCCeEEEEEEe
Q 026266 28 LQLSNKTDNYV-AFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 28 l~L~N~s~~~v-aFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~l 71 (241)
.+++|.++.++ ..+|+| +=+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 57999998765 456665 56888889999999999999999874
No 10
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=93.34 E-value=1.1 Score=39.35 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=54.4
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCC----------ceEEeCCCeeeCCCCeEEEEEEecccc
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPK----------KYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~----------~Y~VrP~~G~i~P~~s~~V~V~lq~~~ 75 (241)
-|.|.|..+.|+.. .....++|.|.++.++.-..-...-+ -|.|-|+.-.|+||+...|.|......
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 36788888999863 35789999999998876665443211 399999999999999999999987532
Q ss_pred cCCCC
Q 026266 76 EAPPD 80 (241)
Q Consensus 76 ~~p~~ 80 (241)
..|.|
T Consensus 103 ~lP~D 107 (246)
T PRK09926 103 ALPKD 107 (246)
T ss_pred CCCCC
Confidence 35655
No 11
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=93.11 E-value=1.2 Score=39.35 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=57.8
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec------CC-----CceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NP-----KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p-----~~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
-|.|.|..+.|+.. .....|+|.|.++.++.-..-+. .| .-|.|-|+.-.|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 36788888998753 34689999999988765554221 12 139999999999999999999998752
Q ss_pred ccCCCCCCCCCeEEEEEEe
Q 026266 75 KEAPPDMQCKDKFLLQSVK 93 (241)
Q Consensus 75 ~~~p~~~~~kdKFlVqs~~ 93 (241)
...|.|...--.|.|..++
T Consensus 106 ~~lP~DRESlf~lnv~eIP 124 (253)
T PRK15249 106 KKLPQDRESVFWFNVLQVP 124 (253)
T ss_pred CCCCCCceEEEEEEeeecC
Confidence 2355553322333344433
No 12
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=92.95 E-value=3.2 Score=36.12 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=56.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec------CCCceEEeCCCeeeCCCCeEEEEEEecccccCCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~ 80 (241)
|.+++..+.|+.. .....++|+|.++.+..-..... ...-|.|-|+.-.|+||+...|.|...+. ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5677778888853 34789999999988744333221 11249999999999999999999998753 45655
Q ss_pred CCCCCeEEEEEEecCC
Q 026266 81 MQCKDKFLLQSVKTND 96 (241)
Q Consensus 81 ~~~kdKFlVqs~~~~~ 96 (241)
.. .-|-+-...+|+
T Consensus 100 RE--Slf~lnv~~IP~ 113 (229)
T PRK15211 100 RE--SLFWLNVQEIPP 113 (229)
T ss_pred ce--EEEEEEEEEcCC
Confidence 33 233343444443
No 13
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=92.74 E-value=1.2 Score=38.86 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=66.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec------------CCCceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------------~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
|.+++..+.|+.. .....++|.|.++++..=..... ...-|.|-|+.-.|+||+...+.|.....
T Consensus 28 v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~ 104 (236)
T PRK11385 28 VVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTES 104 (236)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECCC
Confidence 5677778888853 35789999999998744333211 11249999999999999999999998753
Q ss_pred ccCCCCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 75 KEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 75 ~~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
...|.|.. .-|-+-...+|+..+.. . .=.-....+|++-|.+.
T Consensus 105 ~~LP~DRE--Slf~lnv~~IPp~~~~~----n-----~L~iair~riKLFyRP~ 147 (236)
T PRK11385 105 DILPVDRE--TLFELSIASVPSGKVEN----Q-----SVKVAMRSVFKLFWRPE 147 (236)
T ss_pred CCCCCCce--EEEEEEEEecCCCcCCC----c-----eEEEEEEeeEEEEEccc
Confidence 24565533 33444444444421100 0 01224566777777643
No 14
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=92.68 E-value=3.8 Score=35.43 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=57.9
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecC--------CCceEEeCCCeeeCCCCeEEEEEEecccccC
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN--------PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~ 77 (241)
-|.++|..+.|... .-...|+|+|.++.++.-..-+.. ..-|.|-|+.-.|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 36788888888864 347899999998876554432211 1249999999999999999999998752 35
Q ss_pred CCCCCCCCeEEEEEEecCC
Q 026266 78 PPDMQCKDKFLLQSVKTND 96 (241)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~ 96 (241)
|.|...- |-+..-.+|+
T Consensus 99 P~DrEsl--f~lnv~eIP~ 115 (227)
T PRK15299 99 PEDRESL--YWLDIKSIPS 115 (227)
T ss_pred CCcceEE--EEEEeEecCC
Confidence 6553322 4444444443
No 15
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.59 E-value=0.69 Score=35.52 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=36.4
Q ss_pred eeEEEEEEcCCCCeEEEEeeecCCCceEE-eCCCe-eeCCCCeEEEEEEeccc
Q 026266 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTG-IVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-rP~~G-~i~P~~s~~V~V~lq~~ 74 (241)
-...++|.|.++++..|.|+...+..+.+ .|... -|.||++..+.|.+...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 36899999999999999999998888888 67555 49999999998887654
No 16
>PRK10132 hypothetical protein; Provisional
Probab=92.35 E-value=0.53 Score=36.24 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcc
Q 026266 217 GGVSFIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 217 ~g~~~~~v~~v~ll~~llgy~~~~ 240 (241)
..-|+.-|.+.+.+|||||+++.+
T Consensus 83 ~~~Pw~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhc
Confidence 347888888889999999999876
No 17
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=91.91 E-value=0.75 Score=34.10 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHhccC
Q 026266 219 VSFIFVILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~~~~ 241 (241)
-|+.-+.+.+.+|||||+++.+.
T Consensus 72 ~P~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCC
Confidence 68889999999999999999863
No 18
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=91.55 E-value=2.5 Score=36.85 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=57.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec------CCC----ceEEeCCCeeeCCCCeEEEEEEeccccc
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT------NPK----KYCVRPNTGIVLPRSTCDIIVTMQAQKE 76 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p~----~Y~VrP~~G~i~P~~s~~V~V~lq~~~~ 76 (241)
|.|.+..+.|+.. .....++|.|.++.++.=..-.. .|. -|.|-|+.-.|+||+...|.|.......
T Consensus 12 v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~~ 88 (233)
T PRK15246 12 VNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQQ 88 (233)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCCC
Confidence 6788888999853 35789999999988644333111 111 4999999999999999999999875334
Q ss_pred CCCCCCCCCeEEEEEEecCC
Q 026266 77 APPDMQCKDKFLLQSVKTND 96 (241)
Q Consensus 77 ~p~~~~~kdKFlVqs~~~~~ 96 (241)
.|.|.. --|-+....+|+
T Consensus 89 LP~DRE--Slf~lnv~~IP~ 106 (233)
T PRK15246 89 LATDRE--SLFWLNIYQIPP 106 (233)
T ss_pred CCCCce--EEEEEEEEEcCC
Confidence 565532 224444444444
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.48 E-value=0.74 Score=32.84 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=24.5
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.|..|+..|...|..|+.|...+.++|..|.++..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~ 42 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENE 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 467777888888777777777777776555544333
No 20
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=91.22 E-value=7.7 Score=34.05 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=67.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCC-CeEEEEeeec--C-C----CceEEeCCCeeeCCCCeEEEEEEecccccCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKTT--N-P----KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP 78 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT--~-p----~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p 78 (241)
|.+++..+.|+.. .....++|+|.++ .+..-..-.. . . .-|.|-|+.-.|+||+...|.|...+....|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6777778888853 3468999999986 4555444332 1 0 1399999999999999999999987532356
Q ss_pred CCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 79 PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 79 ~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
.|.. .-|-+-.-.+|+.....+ + ..=......+|++-|.+.
T Consensus 116 ~DRE--Slf~lnv~eIPp~~~~~~------~-n~L~iair~rIKlFyRP~ 156 (243)
T PRK15290 116 DDRE--SVFWLNIKNIPPSASNKA------T-NSLEIAVKTRIKLFWRPA 156 (243)
T ss_pred CCee--EEEEEEEEEcCCCCcccc------c-ceEEEEEEEeeeEEEecc
Confidence 6533 234444444444211000 0 001224567788888754
No 21
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=91.15 E-value=2.9 Score=36.27 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=50.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeee--cC-------CCceEEeCCCeeeCCCCeEEEEEEecccccC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT--TN-------PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEA 77 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT--T~-------p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~ 77 (241)
|.+++..+.|+.. .....++|.|.++.++. |++ .. ..-|.|-|+.-.|+||+...|.|..... ..
T Consensus 21 i~l~~TRvI~~~~---~~~~si~i~N~~~~p~L--vQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~L 94 (226)
T PRK15295 21 IVVGGTRLVFDGN---NDESSINVENKDSKANL--VQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PL 94 (226)
T ss_pred EEeCceEEEEeCC---CceeEEEEEeCCCCcEE--EEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CC
Confidence 6677778888863 34789999999987644 443 11 1249999999999999999999988753 35
Q ss_pred CCC
Q 026266 78 PPD 80 (241)
Q Consensus 78 p~~ 80 (241)
|.|
T Consensus 95 P~D 97 (226)
T PRK15295 95 PAD 97 (226)
T ss_pred CCC
Confidence 554
No 22
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=90.63 E-value=2.8 Score=36.56 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=66.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec----------C----CCceEEeCCCeeeCCCCeEEEEEEec
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT----------N----PKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT----------~----p~~Y~VrP~~G~i~P~~s~~V~V~lq 72 (241)
|.++...+.|+.. .....++|.|.++.+ |=|++. . ..-|.|-|+.-.|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5667777888853 346899999999886 555552 1 11399999999999999999999987
Q ss_pred ccccCCCCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 73 AQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 73 ~~~~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
+. ..|.|.. --|-+....+|+..... . .=.-....+|++-|.+.
T Consensus 99 ~~-~LP~DRE--Slf~lnv~~IPp~~~~~----n-----~l~iair~riKlFYRP~ 142 (234)
T PRK15192 99 GA-PLPADRE--SLFTLSIAAIPSGKPEA----N-----RVQMAFRSALKLLYRPE 142 (234)
T ss_pred CC-CCCCcce--EEEEEEEEecCCCCCCC----c-----EEEEEEEeeeeEEEccc
Confidence 53 3565532 23444444455421100 0 01223466777777743
No 23
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=90.13 E-value=3.2 Score=29.22 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026266 221 FIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~ 239 (241)
+.=.++=+++++++|++++
T Consensus 53 ~~r~iiGaiI~~i~~~i~K 71 (71)
T PF10779_consen 53 IWRTIIGAIITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4445666777778887764
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.93 E-value=1.6 Score=33.49 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=20.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.+-+++.++...+..|-+|...|+-||..|++.+..+
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555556666666666666666666555544
No 25
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=87.64 E-value=8.6 Score=33.28 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=50.1
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCC-e-EEEEeeec-CC---CceEEeCCCeeeCCCCeEEEEEEecccccCCC
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDN-Y-VAFKVKTT-NP---KKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~-vaFKVKTT-~p---~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~ 79 (241)
-|.+.|..+.|... .....++|.|.+++ + +.+..-.. .. .-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 46788888898863 34789999999864 3 33332211 11 139999999999999999999987643 3455
Q ss_pred C
Q 026266 80 D 80 (241)
Q Consensus 80 ~ 80 (241)
|
T Consensus 98 D 98 (228)
T PRK15208 98 D 98 (228)
T ss_pred C
Confidence 4
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.98 E-value=1.3 Score=31.30 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=16.1
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
++++|+|-..+..+.+.++..+..+.++|+.|++|
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 27
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.43 E-value=3.2 Score=26.83 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++-+.+....|+.+..++.++|+.|+.|+..|+..
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555566666666777777777776665543
No 28
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=86.41 E-value=2.3 Score=32.28 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=33.1
Q ss_pred CCeeeEEEEEEcCCCCeEEEEeeec-----C---CCceE--Ee-----------CCCeeeCCCCeEEEEEEeccc
Q 026266 21 KKQISCSLQLSNKTDNYVAFKVKTT-----N---PKKYC--VR-----------PNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~~~vaFKVKTT-----~---p~~Y~--Vr-----------P~~G~i~P~~s~~V~V~lq~~ 74 (241)
++..+..|+|+|.+++.+.|++.-. . .+.|. +. |..=.|+||++.+|.|++.+.
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3457899999999999999997755 1 12222 11 122257899999999998763
No 29
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=86.36 E-value=9.9 Score=33.06 Aligned_cols=110 Identities=11% Similarity=0.218 Sum_probs=65.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCC-eEE-EE-eeec---CCCceEEeCCCeeeCCCCeEEEEEEecccccCCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVA-FK-VKTT---NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~va-FK-VKTT---~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~ 80 (241)
|.+++..+.|+.. .-...++|+|.+++ +.. .. |... ...-|.|-|+.-.|+||+...+.|..... ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677778888863 34789999999864 333 22 1111 11249999999999999999999998753 35655
Q ss_pred CCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 81 MQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 81 ~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
.. .-|-+....+|+.... +. .+..=......+|++-|.+.
T Consensus 105 RE--Slf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyRP~ 144 (228)
T PRK15188 105 RE--SVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIRPK 144 (228)
T ss_pred ce--EEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEECCc
Confidence 33 2344444444442110 00 00001224567788877743
No 30
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.32 E-value=9.5 Score=33.19 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=62.2
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec-------CCCceEEeCCCeeeCCCCeEEEEEEecccccCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT-------~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~ 79 (241)
+.|.+..+.|+... ....++|.|.++.++.-.+..- ....|.|-|..-.|+||+.-.|.|..++. ..|.
T Consensus 29 v~i~~TRiI~~~~~---k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAGD---KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCCC---ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 56667778888653 4689999998889998885543 24469999999999999999999999986 4666
Q ss_pred CCCCCCeEEEEEEecCC
Q 026266 80 DMQCKDKFLLQSVKTND 96 (241)
Q Consensus 80 ~~~~kdKFlVqs~~~~~ 96 (241)
|.. .-|-+.--.+|+
T Consensus 105 drE--slf~lnv~eIPp 119 (235)
T COG3121 105 DRE--SLFRLNVDEIPP 119 (235)
T ss_pred Cce--eEEEEEeeecCC
Confidence 533 344444444444
No 31
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=86.13 E-value=0.96 Score=37.13 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhc
Q 026266 176 KSTEARALISKLKDEKN------------NAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~------------~~~~q~~~l~~el~~l~~~~ 212 (241)
+..++.+++.+|++|.+ .+.|+.+++.+|++.+++..
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566665554 35555556666666555443
No 32
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=86.01 E-value=8.5 Score=33.40 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=53.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCC--eEEEE-eeecC---CCceEEeCCCeeeCCCCeEEEEEEecccccCCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN--YVAFK-VKTTN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD 80 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~--~vaFK-VKTT~---p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~ 80 (241)
|.+++..+.|.... -.+.++|.|.+++ .+... |.... ...|.|-|+.-.|+||+...|.|..... ..|.|
T Consensus 27 i~i~~TRvIy~~~~---~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPADA---KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAAD 102 (229)
T ss_pred EEECCeEEEEeCCC---ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 67778888888542 3589999999864 33232 11111 1259999999999999999999998753 34554
Q ss_pred CCCCCeEEEEEEe
Q 026266 81 MQCKDKFLLQSVK 93 (241)
Q Consensus 81 ~~~kdKFlVqs~~ 93 (241)
...--.|.|..++
T Consensus 103 rESlf~Lnv~eIP 115 (229)
T PRK15195 103 RESLFWMNVKAIP 115 (229)
T ss_pred eeEEEEEEeeecC
Confidence 3322333334443
No 33
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.93 E-value=1.5 Score=31.72 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=16.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
++++|++-..+...+..+...+..+.++|++|++|
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555544
No 34
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=85.68 E-value=2.1 Score=39.67 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCCeeeEEEEEEcCCCCeEEEEeeec------CC-CceEEeCCCee--------------eCCCCeEEEEEEecc
Q 026266 20 LKKQISCSLQLSNKTDNYVAFKVKTT------NP-KKYCVRPNTGI--------------VLPRSTCDIIVTMQA 73 (241)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT------~p-~~Y~VrP~~G~--------------i~P~~s~~V~V~lq~ 73 (241)
.++..+-+++++|+++.+|-.+==+| +| ..|...|+..- |.|||+.+|.|..|.
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 47888999999999999998874444 34 34444444432 889999999999885
No 35
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=85.57 E-value=12 Score=32.82 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=49.7
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCC-CeEEEEeee--cC--C-CceEEeCCCeeeCCCCeEEEEEEecc--cccCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKT--TN--P-KKYCVRPNTGIVLPRSTCDIIVTMQA--QKEAP 78 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKT--T~--p-~~Y~VrP~~G~i~P~~s~~V~V~lq~--~~~~p 78 (241)
|.+++..+.|+.. .-...++|.|.++ .++.=..-. .. + .-|.|-|+.-.|+||+...|.|.... ....|
T Consensus 18 v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~lP 94 (239)
T PRK15254 18 VNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP 94 (239)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCCC
Confidence 5677778888853 3578999999976 354433221 11 1 24999999999999999999998763 22455
Q ss_pred CC
Q 026266 79 PD 80 (241)
Q Consensus 79 ~~ 80 (241)
.|
T Consensus 95 ~D 96 (239)
T PRK15254 95 QD 96 (239)
T ss_pred CC
Confidence 55
No 36
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=85.10 E-value=10 Score=33.16 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=54.0
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeee----cC---CCceEEeCCCeeeCCCCeEEEEEEecccccCCCCC
Q 026266 9 IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (241)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT----T~---p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~ 81 (241)
++-..+.|+. ......++|.|.++.+ |-|++ .. ..-|.|-|+.-.|+|++...|.|..... ..|.|.
T Consensus 32 l~~TRvIy~~---~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~DR 105 (237)
T PRK15224 32 LGATRVIYHA---GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 105 (237)
T ss_pred eCceEEEEeC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCCce
Confidence 3334677774 2346889999998876 55555 11 1249999999999999999999998753 466653
Q ss_pred CCCCeEEEEEEecCC
Q 026266 82 QCKDKFLLQSVKTND 96 (241)
Q Consensus 82 ~~kdKFlVqs~~~~~ 96 (241)
. --|-+....+|+
T Consensus 106 E--SlFwlnv~~IPp 118 (237)
T PRK15224 106 E--TLQWVCIKAVPP 118 (237)
T ss_pred e--EEEEEEEEEcCC
Confidence 2 234444444554
No 37
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=84.31 E-value=0.8 Score=31.69 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026266 221 FIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~~ 240 (241)
++++++.+|+.|.+||++++
T Consensus 7 iQii~l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYLARR 26 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 57899999999999999875
No 38
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.53 E-value=3.7 Score=31.72 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=25.6
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.+-+++.++.+.+..|-+|...|+-||..|++.+..+
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666667777777777777777777777766654
No 39
>PRK10404 hypothetical protein; Provisional
Probab=83.53 E-value=6 Score=30.01 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhccC
Q 026266 218 GVSFIFVILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 218 g~~~~~v~~v~ll~~llgy~~~~~ 241 (241)
..|..-+-+.+.+||+||+++.+.
T Consensus 78 e~Pw~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 78 EKPWQGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhcC
Confidence 367888888888999999998763
No 40
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=83.49 E-value=16 Score=31.68 Aligned_cols=107 Identities=18% Similarity=0.280 Sum_probs=64.6
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeee--cC------C----CceEEeCCCeeeCCCCeEEEEEEecccc
Q 026266 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT--TN------P----KKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (241)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT--T~------p----~~Y~VrP~~G~i~P~~s~~V~V~lq~~~ 75 (241)
.++-..+.|+. ......++|.|.++.+ |-|++ .. | ..|.|-|+.-.|+||+...+.|.....
T Consensus 21 ~l~~TRvIy~~---~~~~~si~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~- 94 (226)
T PRK15218 21 YIYGTRIIYPA---QKKDITVQLMNDGKRS--SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN- 94 (226)
T ss_pred EeCceEEEEcC---CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-
Confidence 34444677774 3346889999999876 44443 11 1 149999999999999999999998753
Q ss_pred cCCCCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 76 EAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 76 ~~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
..|.|.. --|-+-...+|+..+..+ .+..=.-....++++-|.+.
T Consensus 95 ~LP~DRE--Slfwlnv~~IPp~~~~~~------~~n~L~iairtrIKLfYRP~ 139 (226)
T PRK15218 95 NLPGDRE--SLFYLNVLDIPPNSDENK------DKNIIKFALQNRIKLIYRPP 139 (226)
T ss_pred CCCccee--EEEEEEEEEcCCCCCCcC------cCcEEEEEeeeEEEEEEccc
Confidence 4665532 334444455554211000 00001224567788888754
No 41
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=83.42 E-value=7 Score=28.85 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=43.5
Q ss_pred eeEeccCCCeeeEEEEEEcCCCCeEE-EEeeecCCCceEEe--CCCe-eeCCCCeEEEEEEecc
Q 026266 14 LKFPFELKKQISCSLQLSNKTDNYVA-FKVKTTNPKKYCVR--PNTG-IVLPRSTCDIIVTMQA 73 (241)
Q Consensus 14 L~F~~~~~~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y~Vr--P~~G-~i~P~~s~~V~V~lq~ 73 (241)
+.+... +......+...|.+..++. |.+.-..|+-+.++ |..| .|+||+.++-.+.+..
T Consensus 11 ~~~~~~-~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 11 FKFERR-PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred EEEEcC-CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 344443 4567889999999987776 88888888877765 5544 8999988777777765
No 42
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.34 E-value=4.8 Score=30.88 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=38.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
...+..++.++.+++..|+.+...+.+||..|+-|...||+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999988888773
No 43
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.90 E-value=4.7 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=26.3
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+..|+..+...+.+|+.|...++++...++.|-..|..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777776666554443
No 44
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=82.73 E-value=6.9 Score=36.37 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=41.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCce----------------------EEeCCCeeeCCCCe
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGIVLPRST 64 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y----------------------~VrP~~G~i~P~~s 64 (241)
+.++...-.|.-| ++...-+|+++|+++.+|-..==+|+.-+| .|.|+ +=|.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 4444445567654 789999999999999999877444444333 24444 35899999
Q ss_pred EEEEEEecc
Q 026266 65 CDIIVTMQA 73 (241)
Q Consensus 65 ~~V~V~lq~ 73 (241)
.+|.|..|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999975
No 45
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=82.62 E-value=2.7 Score=29.75 Aligned_cols=55 Identities=11% Similarity=0.270 Sum_probs=33.0
Q ss_pred CCeeeEEEEEEcCCCCeE-EEEeeecCCCceE--EeCCC-eeeCCCCeEEEEEEecccc
Q 026266 21 KKQISCSLQLSNKTDNYV-AFKVKTTNPKKYC--VRPNT-GIVLPRSTCDIIVTMQAQK 75 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~--VrP~~-G~i~P~~s~~V~V~lq~~~ 75 (241)
+......++++|.++.++ ..++.-..|.-+. +.|.. +-|+||++..+.+.+.+-.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 456778899999987543 3555555688877 55554 4799999999999998643
No 46
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.65 E-value=4.2 Score=26.25 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=29.4
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 169 ~~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
|.+.|++.++.+.+.-.+|..|+..++.|...|+..+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557888888888888888888888888888887543
No 47
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=81.35 E-value=4.7 Score=39.19 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 180 ARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 180 a~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+++-+.+|..|...|+.||-.|+++++.+..
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 4556677777777777777777777775544
No 48
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.30 E-value=6.3 Score=30.43 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=36.5
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
...+..++..+.+++..|+.+...+.+||..|+-|-+.||+..
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888999999999999999999999998888888764
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.99 E-value=4.6 Score=34.58 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=27.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHh
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~~~~~~g~~~~~v~~v~ll~~llgy~~ 238 (241)
+|+++.+++.+++..++.|+..+..++..++++.. ++-- -.||.- +++=.|||++|-|+.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~-~~wf---~~Gg~v---~~~GlllGlilp~l~ 195 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII-MQWF---MYGGGV---AGIGLLLGLLLPHLI 195 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHchHH---HHHHHHHHHHhcccc
Confidence 34444545555555555544444444444443221 0000 013332 223334788888876
No 50
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=80.99 E-value=20 Score=31.59 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=46.0
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEcCCCC-eEEEE--eeecCCC----ceEEeCCCeeeCCCCeEEEEEEecc-cccCCCC
Q 026266 9 IEPLELKFPFELKKQISCSLQLSNKTDN-YVAFK--VKTTNPK----KYCVRPNTGIVLPRSTCDIIVTMQA-QKEAPPD 80 (241)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFK--VKTT~p~----~Y~VrP~~G~i~P~~s~~V~V~lq~-~~~~p~~ 80 (241)
++-..+.|+. ......++|+|.++. ++.=. |.....+ -|.|-|+.-.|+||+...|.|...+ ....|.|
T Consensus 29 l~~TRVIy~~---~~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRG---EDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcC---CCceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 3334677775 334689999999865 43322 2111111 3999999999999999999999775 2345554
No 51
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.97 E-value=4.2 Score=31.00 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=17.6
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+++.+++++++++.+|+++...|.++.+.|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44455555555555555555555555555543
No 52
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=80.49 E-value=7 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
|++..+.++.-..+.++.||+.++++++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555544444
No 53
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.99 E-value=9.5 Score=27.12 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=25.9
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+..|+.+..++...-..|.+++..+.++|.+|+++..
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777778887776644
No 54
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=79.97 E-value=22 Score=31.29 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=51.4
Q ss_pred CeeeEeccCCCeeeEEEEEEcCCCCeEEEEeee----cC---CCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCC
Q 026266 12 LELKFPFELKKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCK 84 (241)
Q Consensus 12 ~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT----T~---p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~k 84 (241)
..+.|+.. .....++|.|.++.+ |-|++ .. ..-|.|-|+.-.|+|++...|.|..... ..|.|..
T Consensus 47 TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DRE-- 118 (246)
T PRK15233 47 TRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNEE-- 118 (246)
T ss_pred eEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCce--
Confidence 35666643 256899999988776 44443 11 1249999999999999999999998753 4665532
Q ss_pred CeEEEEEEecCC
Q 026266 85 DKFLLQSVKTND 96 (241)
Q Consensus 85 dKFlVqs~~~~~ 96 (241)
--|-+....+|+
T Consensus 119 Slfwlnv~~IPp 130 (246)
T PRK15233 119 SLYWLCVKGVPP 130 (246)
T ss_pred EEEEEEEEEcCC
Confidence 224444444554
No 55
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.34 E-value=6.1 Score=27.98 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=26.3
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.+.+|...|...|.-|+=|...+.+.|+.|.+|..
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 466778888888888777777777777777765544
No 56
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.93 E-value=7.2 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.|.-|+.=-..+.++|..|+.|+..||...
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455566666678888999999999888653
No 57
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=78.82 E-value=28 Score=30.86 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=52.1
Q ss_pred EeCCeeeEeccCCCeeeEEEEEEcCCCC-eEEEEe--eecC----CCceEEeCCCeeeCCCCeEEEEEEecc-cccCCCC
Q 026266 9 IEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKV--KTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQA-QKEAPPD 80 (241)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKV--KTT~----p~~Y~VrP~~G~i~P~~s~~V~V~lq~-~~~~p~~ 80 (241)
++-..+.|+. ......++|.|.++. +..=.. -... ..-|.|-|+.-.|+||+...|.|...+ ....|.|
T Consensus 30 l~~TRvIy~e---~~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D 106 (257)
T PRK15274 30 PDRTRVIFNG---NENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD 106 (257)
T ss_pred eCceEEEEeC---CCceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc
Confidence 3334677774 234789999999865 433222 1111 124999999999999999999999875 2345654
Q ss_pred CCCCCeEEEEEEecCC
Q 026266 81 MQCKDKFLLQSVKTND 96 (241)
Q Consensus 81 ~~~kdKFlVqs~~~~~ 96 (241)
.. --|-+....+|+
T Consensus 107 RE--SlFwlNv~eIPp 120 (257)
T PRK15274 107 RE--SLFYFNVREIPP 120 (257)
T ss_pred ee--EEEEEEEEEcCC
Confidence 22 234444444444
No 58
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=78.46 E-value=7 Score=28.80 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVL 234 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~~l~~~~~~~~~g~~~~~v~~v~ll~~ll 234 (241)
|++|...+..+.....+||..||+.- --++++.++++++.||+
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkEN-----rK~~~ls~~l~~v~~Lv 83 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKEN-----RKSMLLSVALFFVCFLV 83 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhh-----hhhHHHHHHHHHHHHHH
Confidence 33455555455555556666666532 12344444555555544
No 59
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.39 E-value=6.8 Score=28.36 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=31.2
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
.+.|.+|...|..+|.-|+-|...+.++|..|.+|...
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999998898888888776543
No 60
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=77.89 E-value=2.5 Score=29.11 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 026266 221 FIFVILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~~~ 241 (241)
+++|++-||+.|-+||+++++
T Consensus 7 lQli~lcALIf~pLgyl~~r~ 27 (62)
T TIGR03493 7 LQLVLLCALIFFPLGYLARRS 27 (62)
T ss_pred HHHHHHHHHHHHhHHHHHHhh
Confidence 578899999999999998764
No 61
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=77.63 E-value=32 Score=30.11 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=53.5
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeee--cC------C----CceEEeCCCeeeCCCCeEEEEEEecccc
Q 026266 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT--TN------P----KKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (241)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT--T~------p----~~Y~VrP~~G~i~P~~s~~V~V~lq~~~ 75 (241)
.++-..+.|+.. .....++|.|.++.+ |-|++ .. | .-|.|-|+.-.|+|++...|.|...+.
T Consensus 36 ~l~~TRvIy~~~---~k~~sv~i~N~~~~p--yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~- 109 (242)
T PRK15253 36 VIYGTRVIYPAE---KKEVVVQLVNQGEQA--SLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN- 109 (242)
T ss_pred EeCceEEEEeCC---CceEEEEEEcCCCCc--EEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-
Confidence 333346777752 346889999999876 44443 11 1 249999999999999999999987653
Q ss_pred cCCCCCCCCCeEEEEEEecCC
Q 026266 76 EAPPDMQCKDKFLLQSVKTND 96 (241)
Q Consensus 76 ~~p~~~~~kdKFlVqs~~~~~ 96 (241)
..|.|.. --|-+-...+|+
T Consensus 110 ~LP~DRE--Slfwlnv~~IPp 128 (242)
T PRK15253 110 SLPDNKE--SLFYLNVLDIPP 128 (242)
T ss_pred CCCccee--EEEEEEEEEcCC
Confidence 4665522 234444445554
No 62
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=77.58 E-value=7.1 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
++..+.+.+..|-+|...|+=||.+|++.|.
T Consensus 23 el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 23 ELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 3344444444444444445555555554433
No 63
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=76.62 E-value=24 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026266 221 FIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~ 238 (241)
.+++++-+++|+++|..+
T Consensus 59 ~lil~l~~~~Gl~lgi~~ 76 (82)
T PF13807_consen 59 ALILALGLFLGLILGIGL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666777776543
No 64
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.18 E-value=7.5 Score=27.19 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=14.0
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
++.++.++..++..+++|...+.++.+.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555544444444444
No 65
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=75.79 E-value=11 Score=27.42 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCCeEEEEeee-----cCCCceEEeCCCeeeCCCCeEEEEEEe
Q 026266 25 SCSLQLSNKTDNYVAFKVKT-----TNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKT-----T~p~~Y~VrP~~G~i~P~~s~~V~V~l 71 (241)
.-.|+|.|.+...+.|.|.. ..|..|. |.||++.++.+-+
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~-------v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYT-------VAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEE-------ECCCCEEEEEEee
Confidence 67899999999999999997 3445555 5558888777766
No 66
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=36 Score=26.50 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=15.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 174 ~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
.++|+++...-..|++--+...+.-.+|+++
T Consensus 56 ~ekL~~L~drad~L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 56 GEKLDELDDRADQLQAGASQFEKTAVKLKRK 86 (116)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444444444444
No 67
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=74.49 E-value=3.8 Score=28.03 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026266 222 IFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~~~ 239 (241)
+.++++|++|++||+|+.
T Consensus 40 ~~~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 40 FAVVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345688999999999874
No 68
>smart00338 BRLZ basic region leucin zipper.
Probab=73.81 E-value=11 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
...+++..+..|+.|...|..+...|+.|...|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666555543
No 69
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=73.78 E-value=14 Score=22.05 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 185 SKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 185 ~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+|-.|...+++.++.|+..++.||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777888888889888887753
No 70
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=73.61 E-value=14 Score=27.57 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=39.9
Q ss_pred cCCCeeeEEEEEEcCCCCe--------EEEEeeecCCC--ceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 19 ELKKQISCSLQLSNKTDNY--------VAFKVKTTNPK--KYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 19 ~~~~~~~~~l~L~N~s~~~--------vaFKVKTT~p~--~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
..++.....++++|+++.+ .++-|--|.-. ....+-..+-|.||++..+.+.+.+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 3578889999999999877 55555544332 24577888999999999999999875
No 71
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=71.11 E-value=21 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHhccC
Q 026266 217 GGVSFIFVILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 217 ~g~~~~~v~~v~ll~~llgy~~~~~ 241 (241)
+-.|.+-|-+-+-+|||||.++.+.
T Consensus 80 ~e~PWq~VGvaAaVGlllGlLlsRR 104 (104)
T COG4575 80 RENPWQGVGVAAAVGLLLGLLLSRR 104 (104)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcC
Confidence 3467788888899999999998763
No 72
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=70.87 E-value=17 Score=27.38 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=37.0
Q ss_pred CCCeeeEEEEEEcCCCCeEE-EEeeecCCCceE--EeCC-CeeeCCCCeEEEEEEecc
Q 026266 20 LKKQISCSLQLSNKTDNYVA-FKVKTTNPKKYC--VRPN-TGIVLPRSTCDIIVTMQA 73 (241)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y~--VrP~-~G~i~P~~s~~V~V~lq~ 73 (241)
.+....-.++..|.+..++. |.+.-..|+.|. +.|. ...|+|+..++-.+.+..
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 36678899999999988776 777766666555 5566 559999998876666554
No 73
>PRK00523 hypothetical protein; Provisional
Probab=70.45 E-value=4 Score=29.08 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhcc
Q 026266 218 GVSFIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 218 g~~~~~v~~v~ll~~llgy~~~~ 240 (241)
|+.++++++..|+|+++|||+.+
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888888888753
No 74
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=70.42 E-value=16 Score=24.80 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
.+.++...+..|+.+...|..++..|+++...|+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666665555544
No 75
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=70.10 E-value=4 Score=28.03 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=26.2
Q ss_pred EEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEEE
Q 026266 28 LQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (241)
Q Consensus 28 l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V~ 70 (241)
|++.|+|..+|.|- ++....++=.--...+.|.|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 68999999999986 44443333222344449999998877654
No 76
>PRK01844 hypothetical protein; Provisional
Probab=69.21 E-value=4.1 Score=29.00 Aligned_cols=22 Identities=14% Similarity=0.542 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHhcc
Q 026266 219 VSFIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~~~ 240 (241)
+.++++++..|+|+++|||+.+
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888888753
No 77
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=66.35 E-value=60 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=24.0
Q ss_pred eEeccCCCeeeEEEEEEcCCCCeEEEEee
Q 026266 15 KFPFELKKQISCSLQLSNKTDNYVAFKVK 43 (241)
Q Consensus 15 ~F~~~~~~~~~~~l~L~N~s~~~vaFKVK 43 (241)
.+....+....-.++|+|.+++.+-|+|.
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 33456677888999999999999999986
No 78
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.93 E-value=12 Score=28.47 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+.+..+++..+++|...+.++|+.|+.|+..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 57888999999999999999999999999887764
No 79
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=65.89 E-value=19 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
..+-++.+|..|++..+.+..||.-|++
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666555555555555543
No 80
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=65.24 E-value=30 Score=25.91 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCeeeEEEEEEcCCCCeEE-----EEeeecCCCceEEeC---------CCeeeCCCCeEEEEEEecc
Q 026266 21 KKQISCSLQLSNKTDNYVA-----FKVKTTNPKKYCVRP---------NTGIVLPRSTCDIIVTMQA 73 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-----FKVKTT~p~~Y~VrP---------~~G~i~P~~s~~V~V~lq~ 73 (241)
++-+.-.++++|.++.++. |++.+..-..|.... ..+-|.||++++-.|.+.-
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 4557889999999998776 678877666776544 3579999999999998853
No 81
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=64.72 E-value=16 Score=32.57 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.-+.+..|....+.-|++|+..+++++..|++|+..+++..
T Consensus 212 ~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 212 KRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678888899999999999999999999999887653
No 82
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=63.77 E-value=14 Score=28.74 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
.....|..|+.|++.+.+||++|+.|+
T Consensus 93 qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 93 QSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 344568999999999999999999875
No 83
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=63.11 E-value=19 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
.+..|+.+...|..+|..|++++..|+
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555655555544
No 84
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.33 E-value=31 Score=24.06 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=28.2
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.+|+.+++=....|..|.+......++...|+.++..|..+.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777666666777777776666554
No 85
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=61.52 E-value=27 Score=26.90 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=37.9
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.+.+..++.++-+++.-|++...++++||..|+=|.+.||++.
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 4567788999999999999999999999999998888888764
No 86
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=61.10 E-value=8 Score=32.05 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=4.8
Q ss_pred hccchHHHHHH
Q 026266 173 HQDKSTEARAL 183 (241)
Q Consensus 173 l~~k~~ea~~~ 183 (241)
++.||..|...
T Consensus 5 ~EsklN~AIER 15 (166)
T PF04880_consen 5 FESKLNQAIER 15 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 87
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=61.10 E-value=24 Score=28.06 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=18.4
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+|+.+-.++.+++.+|.+|...+.+|+..++...+
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555554433
No 88
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.81 E-value=25 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.....++.+++.+...+..+|..|+.|..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554443
No 89
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=60.46 E-value=9.3 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 026266 222 IFVILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~~~~~ 241 (241)
.+++.+++.+++.+||.+++
T Consensus 18 vI~~~igm~~~~~~~F~~k~ 37 (42)
T PF11346_consen 18 VIVFTIGMGVFFIRYFIRKM 37 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999998763
No 90
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=60.45 E-value=18 Score=26.92 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=34.0
Q ss_pred eeEEEEEEcCCCCeE-EEEeeecC-----------------CCceEEeCCC--eeeCCCCeEEEEEEecc
Q 026266 24 ISCSLQLSNKTDNYV-AFKVKTTN-----------------PKKYCVRPNT--GIVLPRSTCDIIVTMQA 73 (241)
Q Consensus 24 ~~~~l~L~N~s~~~v-aFKVKTT~-----------------p~~Y~VrP~~--G~i~P~~s~~V~V~lq~ 73 (241)
....|+|+|.++.++ .++|.=+- -..|.|+|.. +.|+||+++.+-+....
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 456788888887765 24433222 2578888763 79999999877666554
No 91
>smart00338 BRLZ basic region leucin zipper.
Probab=60.00 E-value=23 Score=24.14 Aligned_cols=29 Identities=31% Similarity=0.522 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 182 ALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 182 ~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+++..|+.+...+..+|..|+.++..|+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555566666666555555443
No 92
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=59.83 E-value=34 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 174 ~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+....++...+..|+.+...|.+++..|++|
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677788888888888888888888765
No 93
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=59.62 E-value=16 Score=25.51 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.+.+..+++..|+.+...+.++|..|++++..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788889999999999999999998888766
No 94
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=59.34 E-value=63 Score=30.88 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=38.9
Q ss_pred eeeEEEEEEcCCCCeEEEEeeecCCCceEEe-C-CCeeeCCCCeEEEEEEeccc
Q 026266 23 QISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-P-NTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 23 ~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P-~~G~i~P~~s~~V~V~lq~~ 74 (241)
.-...++|.|.+.++..|.++........+. + +.=.|+||+..++.|++...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 4578999999999988888887755443333 2 23489999999888887653
No 95
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=58.86 E-value=27 Score=23.72 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=15.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+|+.++.++......|..+...+..++..|+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444443
No 96
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.59 E-value=38 Score=22.87 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=28.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
++++.++..+...|..++.|...+....+++.+-.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888999999888888888887643
No 97
>PRK00736 hypothetical protein; Provisional
Probab=58.28 E-value=38 Score=23.65 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=25.2
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+|+.+++-.+..|..|.+......++...|+.++..|..
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766667777776666655666666666555543
No 98
>smart00637 CBD_II CBD_II domain.
Probab=58.19 E-value=55 Score=23.63 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=30.5
Q ss_pred eeEEEEEEcCCCCeE-----EEEeee-------------cCCCceEEeCC--CeeeCCCCeEEEEEEe
Q 026266 24 ISCSLQLSNKTDNYV-----AFKVKT-------------TNPKKYCVRPN--TGIVLPRSTCDIIVTM 71 (241)
Q Consensus 24 ~~~~l~L~N~s~~~v-----aFKVKT-------------T~p~~Y~VrP~--~G~i~P~~s~~V~V~l 71 (241)
....|+|+|.++.++ .|.+-- .....|.++|. .+.|+||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 356778888766433 333311 02336999875 4899999988876655
No 99
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.92 E-value=23 Score=34.11 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
++.+++.++..|..|.+.+++||+.|+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555553
No 100
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=57.31 E-value=44 Score=25.65 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=9.6
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 026266 218 GVSFIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 218 g~~~~~v~~v~ll~~llgy~~ 238 (241)
|..+.+++++++.++-+|.|+
T Consensus 92 ~~~~~~~~~~~lp~~a~~lY~ 112 (117)
T TIGR03142 92 GRLAALVVVLLLPVLALGLYL 112 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 333444445555444444443
No 101
>PRK00295 hypothetical protein; Provisional
Probab=57.27 E-value=40 Score=23.51 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=22.2
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
.+|+.+++-.+..|..|.+......++...|+.++..|.
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566665566666666655555555555555555443
No 102
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=55.88 E-value=26 Score=23.96 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+|.+....-..|..|..++.+||..|+.
T Consensus 27 rY~~vL~~R~~l~~e~~~L~~qN~eLr~ 54 (60)
T PF14775_consen 27 RYNKVLLDRAALIQEKESLEQQNEELRS 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777778888877764
No 103
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=55.75 E-value=43 Score=27.38 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
....+.|.++++|..+..++.+.|+++
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~ 95 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAK 95 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777776666543
No 104
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=55.63 E-value=6.6 Score=36.90 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=18.8
Q ss_pred CCchHHHHHHH-HHHHHHHHHHhcc
Q 026266 217 GGVSFIFVILV-GLVGIVLGYVMKK 240 (241)
Q Consensus 217 ~g~~~~~v~~v-~ll~~llgy~~~~ 240 (241)
.|.++..|++| +|+|||.-||+-|
T Consensus 370 aGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 370 AGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eeeeehhHHHHHHHHHHHhhheeec
Confidence 67888766555 5999999999865
No 105
>PRK14127 cell division protein GpsB; Provisional
Probab=55.32 E-value=37 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
|++.......|.+|+..|.+++..|++++..++.+
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666666666666666655544
No 106
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=54.35 E-value=19 Score=35.23 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+...|+..++++.+||+.|+.|-..||++
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~q 331 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQ 331 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445555555555555555555555554
No 107
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=54.03 E-value=30 Score=24.95 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 185 SKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 185 ~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
..|++|...|.++.++|..||..+++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555554433
No 108
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.57 E-value=46 Score=23.24 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=27.5
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
...++..-..+.++...++.|+..+.+.|...++.++
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777888888888888888887777665
No 109
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.42 E-value=14 Score=26.16 Aligned_cols=20 Identities=20% Similarity=0.675 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026266 221 FIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~~ 240 (241)
++++.+-.|+|+++|||+.+
T Consensus 7 il~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445667788888753
No 110
>PF07963 N_methyl: Prokaryotic N-terminal methylation motif; InterPro: IPR012902 This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N terminus of pilins and other proteins involved in secretion, see IPR001082 from INTERPRO, IPR010271 from INTERPRO, IPR003413 from INTERPRO and IPR011453 from INTERPRO. This model describes many (but not all) examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N terminus []. This domain contains a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue produced after cleavage, usually Phe, is methylated. Separate domains of the prepilin peptidase appear to be responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this region.
Probab=53.37 E-value=19 Score=19.23 Aligned_cols=18 Identities=17% Similarity=0.595 Sum_probs=12.2
Q ss_pred CCchHH-HHHHHHHHHHHH
Q 026266 217 GGVSFI-FVILVGLVGIVL 234 (241)
Q Consensus 217 ~g~~~~-~v~~v~ll~~ll 234 (241)
.||++. +++.++++|++.
T Consensus 1 ~GFTLiE~~v~l~i~~i~~ 19 (20)
T PF07963_consen 1 KGFTLIELLVALAIIAILA 19 (20)
T ss_pred CceeHHHHHHHHHHHHHHh
Confidence 378875 566777777664
No 111
>PRK04325 hypothetical protein; Provisional
Probab=53.29 E-value=49 Score=23.47 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=27.2
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+.+|+.+++=.+..|..|.+......++...|+.++..|..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777777766666666666666665543
No 112
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.81 E-value=80 Score=26.38 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCCeeeEEEEEEcCCCCeEEEEeeecC----CCceEEe-----CCCeeeCCCCeEEEEEEecc
Q 026266 20 LKKQISCSLQLSNKTDNYVAFKVKTTN----PKKYCVR-----PNTGIVLPRSTCDIIVTMQA 73 (241)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT~----p~~Y~Vr-----P~~G~i~P~~s~~V~V~lq~ 73 (241)
.++.+...++|.|.++. -||.|+=+. |..|-+- =+...|+||+++.-.+++.|
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRP 97 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEee
Confidence 46789999999999877 799999887 2334322 11355666666666666655
No 113
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=52.69 E-value=18 Score=29.87 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=26.1
Q ss_pred EEeeecCCCceEEeCCCee--eCCCCeEEEEEEecc
Q 026266 40 FKVKTTNPKKYCVRPNTGI--VLPRSTCDIIVTMQA 73 (241)
Q Consensus 40 FKVKTT~p~~Y~VrP~~G~--i~P~~s~~V~V~lq~ 73 (241)
|+|.-=+=+.|++.|.-|+ |.||++++|.+.-+.
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 6777778889999999997 899999999998654
No 114
>PRK04406 hypothetical protein; Provisional
Probab=52.60 E-value=51 Score=23.51 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=27.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+.+|+.+++=....|..|.+......++...|+.++..|.++
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666676666677777776666666666666666655443
No 115
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.56 E-value=30 Score=25.17 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=29.6
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 169 ~~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+..+|+..+..+...|...++|...|..+|+-|++=+..|
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777888888888888888888888887654433
No 116
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.40 E-value=67 Score=21.76 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=14.9
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
|.....++...|.+|..+.+.++.+....++|
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555554444444444444
No 117
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.78 E-value=38 Score=27.58 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=10.2
Q ss_pred hhccchHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKN 192 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~ 192 (241)
++++++.++.+.+..|+.|.+
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544444
No 118
>COG5547 Small integral membrane protein [Function unknown]
Probab=51.74 E-value=17 Score=24.74 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 026266 222 IFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~~~~ 240 (241)
.+|+++|++|+-+||+.++
T Consensus 33 ilviil~~lGv~iGl~~~r 51 (62)
T COG5547 33 ILVIILILLGVYIGLYKKR 51 (62)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4789999999999998765
No 119
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=51.55 E-value=53 Score=29.84 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=25.7
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.++++||.+|+-.-+.|-.|+..+.-|...|+.++.
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le 122 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE 122 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777765444
No 120
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=51.43 E-value=87 Score=23.04 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=32.6
Q ss_pred EEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEec
Q 026266 8 SIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (241)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq 72 (241)
.++|+++..+. +. ...|+++|.++..-.|-+..- .+ ...|.||++.++.++..
T Consensus 31 ~f~P~~i~v~~--G~--~v~l~~~N~~~~~h~~~i~~~-----~~---~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 31 GFSPSTITVKA--GQ--PVTLTFTNNDSRPHEFVIPDL-----GI---SKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEES-EEEEET--TC--EEEEEEEE-SSS-EEEEEGGG-----TE---EEEE-TT-EEEEEEEE-
T ss_pred eEecCEEEEcC--CC--eEEEEEEECCCCcEEEEECCC-----ce---EEEECCCCEEEEEEcCC
Confidence 56777777663 22 356999999888888877761 11 25799999999988543
No 121
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=50.66 E-value=46 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
.-+|..+.|+.|+.|++.+..-++.|..
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL~r 53 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDLKR 53 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888876666666644
No 122
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=50.47 E-value=35 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.++++.+..|+.++..+..+.+.++.++.
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444
No 123
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=50.43 E-value=86 Score=22.58 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=13.7
Q ss_pred eeEEEEEEcCCCCeEEEEeee
Q 026266 24 ISCSLQLSNKTDNYVAFKVKT 44 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKT 44 (241)
+.-.|+|+|+++++|-+..-|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 456788888888888777654
No 124
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.24 E-value=54 Score=23.14 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=23.6
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+|+.+++=....|..|.+......++...|+.++..|..
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666656666666666665555555666655555443
No 125
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=50.13 E-value=17 Score=21.30 Aligned_cols=18 Identities=17% Similarity=0.591 Sum_probs=6.5
Q ss_pred CCCCchHH-HHHHHHHHHH
Q 026266 215 NRGGVSFI-FVILVGLVGI 232 (241)
Q Consensus 215 ~~~g~~~~-~v~~v~ll~~ 232 (241)
++.||++. ..+.++|+++
T Consensus 12 ~~~GFTLiEllVa~~I~~i 30 (31)
T PF13544_consen 12 RQRGFTLIELLVAMAILAI 30 (31)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHHH
Confidence 45799986 4455555554
No 126
>PRK09039 hypothetical protein; Validated
Probab=49.72 E-value=35 Score=31.45 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=18.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.+..++++..+|..|+.|...+++|...|+.+++
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555544333
No 127
>PRK02119 hypothetical protein; Provisional
Probab=49.20 E-value=63 Score=22.87 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=22.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+|+.+++=.+..|..|.+......++...|+.++..|.+
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566555555666665555555555555555554433
No 128
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=49.00 E-value=37 Score=31.11 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=21.4
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.+.++.++++.+..|+.+.....++.+.|+++..
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~ 273 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIE 273 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666666666666665544
No 129
>TIGR02532 IV_pilin_GFxxxE prepilin-type N-terminal cleavage/methylation domain. This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14).
Probab=48.31 E-value=33 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.634 Sum_probs=14.1
Q ss_pred CCchHH-HHHHHHHHHHHHHHH
Q 026266 217 GGVSFI-FVILVGLVGIVLGYV 237 (241)
Q Consensus 217 ~g~~~~-~v~~v~ll~~llgy~ 237 (241)
.||++. +++.++++++++...
T Consensus 2 ~GfTLiEllial~i~~i~~~~~ 23 (26)
T TIGR02532 2 RGFTLIELLVVLAILGILAAIA 23 (26)
T ss_pred CceeHHHHHHHHHHHHHHHHHh
Confidence 578875 556667777776654
No 130
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.13 E-value=20 Score=25.58 Aligned_cols=18 Identities=28% Similarity=0.744 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 026266 223 FVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~~~ 240 (241)
.++++.+++.-|||++++
T Consensus 9 g~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 9 GIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHhHhhheec
Confidence 346667788889999986
No 131
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=47.76 E-value=18 Score=25.91 Aligned_cols=19 Identities=16% Similarity=0.639 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026266 221 FIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~ 239 (241)
-.++++.+++||++||+..
T Consensus 14 ~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 14 QYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999864
No 132
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.89 E-value=28 Score=33.47 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=10.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNA 194 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~ 194 (241)
+++.++.++.++=.+|++|.++|
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 133
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=46.71 E-value=19 Score=25.54 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=18.2
Q ss_pred chHH-HHHHHHHHHHHHHHHhccC
Q 026266 219 VSFI-FVILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 219 ~~~~-~v~~v~ll~~llgy~~~~~ 241 (241)
.|+. ..+++||+|.+++|+|-+|
T Consensus 52 iPvaagl~ll~lig~Fis~vMlKs 75 (81)
T KOG3488|consen 52 IPVAAGLFLLCLIGTFISLVMLKS 75 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4554 4588999999999998764
No 134
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=46.52 E-value=63 Score=24.59 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=25.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.+|+..+.+-++.|.+++.|.+++.-.|+.|...+.
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777788888888877777777754444
No 135
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.29 E-value=37 Score=32.74 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=17.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++++++++++.+...+..++..+.++.+.++.|...|+.+
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444333322233333444444444555555444
No 136
>PRK00846 hypothetical protein; Provisional
Probab=45.94 E-value=76 Score=22.87 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=24.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+|+.+++=.+..|..|.+......++...|+.++..|..
T Consensus 16 ~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 16 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666655666666655554443
No 137
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.85 E-value=86 Score=21.22 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=17.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+|..|.+.+...|..|+.+.....+|-....+.++
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444443334433
No 138
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=45.71 E-value=1.6e+02 Score=25.72 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=57.2
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeee---cCC---------------CceEEeCCCeeeCCCCeEEE
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT---TNP---------------KKYCVRPNTGIVLPRSTCDI 67 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT---T~p---------------~~Y~VrP~~G~i~P~~s~~V 67 (241)
-|.|.|-.+.+.. +.+..+.++|+|.++.+..++|.. ++| ..-.+.|..-.|.||++-.|
T Consensus 17 ~l~V~Pi~~~i~a--~~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~I 94 (234)
T PRK15308 17 NMLVYPMAAEIGA--GREEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTV 94 (234)
T ss_pred eEEEEEeEEEecC--CCcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEE
Confidence 3678887766653 224578999999999988877652 122 23678899999999999999
Q ss_pred EEEecccccCCCCCCCCCeEEEEEEecCC
Q 026266 68 IVTMQAQKEAPPDMQCKDKFLLQSVKTND 96 (241)
Q Consensus 68 ~V~lq~~~~~p~~~~~kdKFlVqs~~~~~ 96 (241)
.+..... + + .-.-|-|...++++
T Consensus 95 Rli~lg~---~-~--kE~~YRl~~~pvp~ 117 (234)
T PRK15308 95 RVISLQA---P-E--REEAWRVYFEPVAE 117 (234)
T ss_pred EEEEcCC---C-C--cEEEEEEEEEecCC
Confidence 9887652 1 1 12445555566654
No 139
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.41 E-value=52 Score=29.94 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026266 223 FVILVGLVGIVLGYV 237 (241)
Q Consensus 223 ~v~~v~ll~~llgy~ 237 (241)
+=++.+-+++||..+
T Consensus 171 INAA~Gq~~LLL~~l 185 (314)
T PF04111_consen 171 INAAWGQTALLLQTL 185 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 335555555555444
No 140
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.03 E-value=56 Score=28.56 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.7
Q ss_pred CCCeEEEEEE
Q 026266 61 PRSTCDIIVT 70 (241)
Q Consensus 61 P~~s~~V~V~ 70 (241)
-|+.+.|+|+
T Consensus 31 LG~eYnITis 40 (290)
T COG4026 31 LGSEYNITIS 40 (290)
T ss_pred hcccceeEEE
Confidence 3444555554
No 141
>PRK00523 hypothetical protein; Provisional
Probab=44.96 E-value=27 Score=24.89 Aligned_cols=21 Identities=10% Similarity=0.314 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 026266 219 VSFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~~ 239 (241)
..+.+++++.++++++|.+.+
T Consensus 2 ~~~~l~I~l~i~~li~G~~~G 22 (72)
T PRK00523 2 LAIGLALGLGIPLLIVGGIIG 22 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999998764
No 142
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.93 E-value=63 Score=23.90 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 181 RALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 181 ~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
...|..|+.+...+.+++..|+.+++..+
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777776665433
No 143
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=44.62 E-value=42 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
..+..+++.+..+.++...+.+..+++.+++..+++
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555544
No 144
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=44.60 E-value=1.2e+02 Score=30.08 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=36.2
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.-|+.+..+.-.+|..|++++..+.++.+.++.||...++..
T Consensus 366 kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 366 KCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356678889999999999999999999999999998877653
No 145
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=43.62 E-value=66 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
..++..++.+++.|...+..+|..|+-|..
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555677777777777777777765544
No 146
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=43.39 E-value=37 Score=31.24 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=10.7
Q ss_pred hhccchHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEK 191 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~ 191 (241)
.||+..+++..++.+|++|+
T Consensus 43 ~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 43 SLKKENNDLKIEVERLENEM 62 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555554
No 147
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=43.17 E-value=55 Score=28.79 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNN---KLRQDLELLRR 210 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~---~l~~el~~l~~ 210 (241)
++.++..+|++|...+..++. .+++|.+.|++
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333 22344444444
No 148
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.06 E-value=71 Score=24.55 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=20.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
..+++++..+.+++.+|+.+.....++.+.|++|
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555556666666666666666555666665554
No 149
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=41.77 E-value=51 Score=22.49 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
++.-|++....|..+|..|+.|-..||...
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455566666666666666666666665543
No 150
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=41.72 E-value=53 Score=32.32 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=31.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+.+++++++-+.+.+..|++|...+.+||-.|+.++..++++
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345556666677778888888888888888888777766654
No 151
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=41.57 E-value=1.1e+02 Score=24.15 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=32.5
Q ss_pred CCeeeEEEEEEcCCCCeEEEE---e------------eecCCCceEEeC--CCeeeCCCCeEEEEEEecc
Q 026266 21 KKQISCSLQLSNKTDNYVAFK---V------------KTTNPKKYCVRP--NTGIVLPRSTCDIIVTMQA 73 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~~~vaFK---V------------KTT~p~~Y~VrP--~~G~i~P~~s~~V~V~lq~ 73 (241)
+....-..+|+|.++.+++|= + |+-.|..|...+ +..-|.||+++.+.+.+..
T Consensus 67 ~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 67 PGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 444556667777766655542 1 122455555543 3445999999999998863
No 152
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=41.40 E-value=1.4e+02 Score=21.76 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhcc
Q 026266 225 ILVGLVGIVLGYVMKK 240 (241)
Q Consensus 225 ~~v~ll~~llgy~~~~ 240 (241)
+.++++-..++|++.+
T Consensus 75 ~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 75 FAFLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3344444455666654
No 153
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.96 E-value=67 Score=27.88 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCeEEEE--eeecCCCceEEeCCCeeeCCCCeEEEEEE
Q 026266 26 CSLQLSNKTDNYVAFK--VKTTNPKKYCVRPNTGIVLPRSTCDIIVT 70 (241)
Q Consensus 26 ~~l~L~N~s~~~vaFK--VKTT~p~~Y~VrP~~G~i~P~~s~~V~V~ 70 (241)
..|+++|+|..+|.|- .-+. .++-.. -+.+.|.|+++.++.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999998 4443 444333 78999999998886544
No 154
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.59 E-value=25 Score=25.76 Aligned_cols=16 Identities=44% Similarity=0.810 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 026266 223 FVILVGLVGIVLGYVM 238 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~ 238 (241)
.+++|+|+|+++||=+
T Consensus 30 ~iAlvGllGilvGeq~ 45 (93)
T COG4317 30 AIALVGLLGILVGEQI 45 (93)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4569999999999843
No 155
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=40.43 E-value=1.7e+02 Score=25.42 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=12.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHh
Q 026266 217 GGVSFIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 217 ~g~~~~~v~~v~ll~~llgy~~ 238 (241)
.|+.+++++++.++.|+.-++|
T Consensus 226 ~~~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 226 WGCWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4565555555555566666655
No 156
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=40.07 E-value=68 Score=28.68 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=16.7
Q ss_pred hhccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKN----NAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~----~~~~q~~~l~~el~ 206 (241)
.+++...++++++..|+.+.. .+.+||++|++.|.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455555444433322 25566666665443
No 157
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.88 E-value=60 Score=28.60 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=25.7
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
.||++.+.+...++..|+.|.+.+...|.+|-+.+
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777778888888888888887775443
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.56 E-value=69 Score=29.10 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026266 222 IFVILVGLVGIVLGYV 237 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~ 237 (241)
+.++++..|+=-+||=
T Consensus 177 q~~LLL~~la~~l~~~ 192 (314)
T PF04111_consen 177 QTALLLQTLAKKLNFK 192 (314)
T ss_dssp HHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3445555555444443
No 159
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=39.55 E-value=48 Score=19.26 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026266 221 FIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~ 238 (241)
...++...|+-+|+||+.
T Consensus 3 ~~vi~g~llv~lLl~YLv 20 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLV 20 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666667777764
No 160
>PF13205 Big_5: Bacterial Ig-like domain
Probab=39.30 E-value=1.4e+02 Score=21.42 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=36.3
Q ss_pred eeeEeccCC-CeeeEEEEEEc--CCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEe
Q 026266 13 ELKFPFELK-KQISCSLQLSN--KTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 13 eL~F~~~~~-~~~~~~l~L~N--~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~l 71 (241)
.|.|..+.+ ......+.+.+ ....+|.+. ...-+.+.++|. +-|.||..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECC
Confidence 477777654 23445556643 444555555 344488899998 557899999998854
No 161
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.63 E-value=76 Score=27.86 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=25.7
Q ss_pred hhhhccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKN---NAVQQNNKLRQDLE 206 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~---~~~~q~~~l~~el~ 206 (241)
..+++++..++++++..|+.+.. .+.+||++|++-+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777777777776665 56788888877554
No 162
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=38.34 E-value=86 Score=25.11 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=24.9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+++++++.+++.....+..|..+|...+..|..+++.+..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666666666666654443
No 163
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=38.23 E-value=1.1e+02 Score=24.47 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
|++++-..|..|...|.++|..++.|++.++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444445555444
No 164
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=38.08 E-value=56 Score=31.38 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+-.|+..++..|+.+...|.+|.++||.
T Consensus 287 eNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 287 ENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred CcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3345555666666655555555555553
No 165
>PRK13673 hypothetical protein; Provisional
Probab=37.87 E-value=64 Score=25.21 Aligned_cols=34 Identities=32% Similarity=0.695 Sum_probs=20.0
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHh
Q 026266 204 DLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 204 el~~l~~~~~~~~~g~~~~~v~~v~ll~~llgy~~ 238 (241)
|+...|++.+++.+++..+++++ .++-+++||.+
T Consensus 78 Em~l~r~kk~k~~~~~~~~~ii~-lvlti~lG~~L 111 (118)
T PRK13673 78 EMSLAKRKKGKPTGGFWWIFIIV-LVLTILLGLIL 111 (118)
T ss_pred HHHHHHHHcCCCcccHHHHHHHH-HHHHHHHHHHh
Confidence 56666666655566765555544 34555777643
No 166
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=37.78 E-value=40 Score=21.95 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 026266 219 VSFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~~ 239 (241)
.+.+.-+++.++|+.|||+..
T Consensus 24 ~~~q~~ll~vllsIalGylvs 44 (48)
T PF06612_consen 24 NVRQARLLIVLLSIALGYLVS 44 (48)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 345666788889999999864
No 167
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=37.53 E-value=1e+02 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l 201 (241)
+|..|.+..+.+.+||.-|
T Consensus 75 qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 75 QIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333433333444444444
No 168
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.40 E-value=2.3e+02 Score=23.25 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHh
Q 026266 225 ILVGLVGIVLGYVM 238 (241)
Q Consensus 225 ~~v~ll~~llgy~~ 238 (241)
++++.+++++||+-
T Consensus 161 ~i~~~~a~~la~~r 174 (177)
T PF07798_consen 161 VIFGCVALVLAILR 174 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777788763
No 169
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.36 E-value=84 Score=23.46 Aligned_cols=38 Identities=11% Similarity=0.252 Sum_probs=24.6
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+.++.+...+.+.+.+|+++...+..+-..++.++..+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666667777777777777766666666665443
No 170
>PHA02657 hypothetical protein; Provisional
Probab=37.11 E-value=30 Score=25.50 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026266 221 FIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~~ 240 (241)
..|++.+|++.|+|-|+.+-
T Consensus 31 tvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 31 TIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999998763
No 171
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.42 E-value=1e+02 Score=28.64 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=25.4
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFI 222 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~~~~~~g~~~~ 222 (241)
.+.+++|.++...+..++.|++.+.++.++.+++++. +.++-..|-|+.
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee---rg~~mtD~sPlv 331 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE---RGSSMTDGSPLV 331 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCHHH
Confidence 3444555555555666666666655555555555442 122223566654
No 172
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=36.30 E-value=38 Score=22.88 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026266 223 FVILVGLVGIVLGYVMK 239 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~~ 239 (241)
|++.++|+-+|-||+++
T Consensus 5 f~~ti~lvv~LYgY~yh 21 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYH 21 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55677778888999875
No 173
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.22 E-value=1e+02 Score=25.37 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026266 186 KLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 186 ~L~eE~~~~~~q~~~l~~el~ 206 (241)
+|++|...+.++|+.|+.|+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~ 128 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELE 128 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 174
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=36.04 E-value=93 Score=22.98 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
|+.++..++.+|.+|...+..|....+.|+.
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666655555544444433
No 175
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=35.98 E-value=84 Score=27.60 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=29.2
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|+++|+|..++.|. ++....+ -.+....|+|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 499999999999886 4322222 12323468999999998875
No 176
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.84 E-value=74 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 180 ARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 180 a~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
..+++.+|+.|+..+..|+.-|++-.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554433
No 177
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.76 E-value=82 Score=21.66 Aligned_cols=11 Identities=36% Similarity=0.743 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 026266 196 QQNNKLRQDLE 206 (241)
Q Consensus 196 ~q~~~l~~el~ 206 (241)
.+|..|.+++.
T Consensus 39 ~rn~eL~~ei~ 49 (61)
T PF08826_consen 39 KRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 178
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.69 E-value=1.2e+02 Score=21.22 Aligned_cols=11 Identities=55% Similarity=0.794 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 026266 199 NKLRQDLELLR 209 (241)
Q Consensus 199 ~~l~~el~~l~ 209 (241)
.+|+.|++.|+
T Consensus 50 ~~Lk~E~e~L~ 60 (69)
T PF14197_consen 50 NKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 179
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=35.63 E-value=1.4e+02 Score=20.95 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=34.5
Q ss_pred CCCeeeEEEEEEcCCCC-eEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 20 LKKQISCSLQLSNKTDN-YVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 20 ~~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
.+....-.++|+|.+.. .=.|+|+-...+...-.-..+-|.||++..+.+++.+.
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 35678899999999764 34566664333333323333778999999998888764
No 180
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.61 E-value=1.3e+02 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.+.+++.|+...+.|.+.++.++..|.++
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554444443
No 181
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=35.40 E-value=11 Score=30.13 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=1.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhc
Q 026266 218 GVSFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 218 g~~~~~v~~v~ll~~llgy~~~ 239 (241)
-++++.++++++++++=-|+++
T Consensus 158 ~~si~~~~vli~~~~~Qv~~lk 179 (183)
T PF01105_consen 158 WWSIIQIVVLILVSVWQVYYLK 179 (183)
T ss_dssp --------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666556555
No 182
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=35.36 E-value=55 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.496 Sum_probs=17.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhc
Q 026266 217 GGVSFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 217 ~g~~~~~v~~v~ll~~llgy~~~ 239 (241)
+|.+.++++++.++-.++.|+|+
T Consensus 51 ~~~~~~~~~~~w~~~A~~ly~~R 73 (103)
T PF11027_consen 51 GGNSMFMMMMLWMVLAMALYLLR 73 (103)
T ss_pred CCccHHHHHHHHHHHHHHHHHcC
Confidence 56777777777777777788876
No 183
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.23 E-value=1.1e+02 Score=23.86 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=27.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.++.+...+...+.+|+++...+.++.+.+++.+..+..
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777777777777777777766665543
No 184
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.17 E-value=33 Score=30.74 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcc
Q 026266 220 SFIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 220 ~~~~v~~v~ll~~llgy~~~~ 240 (241)
.+..|++++|+|+|+.|++++
T Consensus 237 ALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 237 ALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999987
No 185
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.14 E-value=1.5e+02 Score=20.35 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=13.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
.++.++......|. ++...|+.+++.+|
T Consensus 32 ~kLqeaE~rn~eL~-------~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 32 SKLQEAEKRNRELE-------QEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 34445544444444 44555555555443
No 186
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.09 E-value=49 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~~ 207 (241)
++.+..++.++.+++++|++.
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555443
No 187
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.00 E-value=77 Score=27.72 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=3.9
Q ss_pred EEEEEEec
Q 026266 65 CDIIVTMQ 72 (241)
Q Consensus 65 ~~V~V~lq 72 (241)
++|.|..-
T Consensus 7 VDVRIiVE 14 (290)
T COG4026 7 VDVRIIVE 14 (290)
T ss_pred ceEEEEee
Confidence 45555544
No 188
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=34.96 E-value=48 Score=27.82 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.1
Q ss_pred CeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEe
Q 026266 36 NYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 36 ~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~l 71 (241)
++|+||+ |.+.-|+||+++++.+..
T Consensus 116 Hrvs~tl-----------p~wqslapG~s~~~~~~Y 140 (180)
T PF06483_consen 116 HRVSFTL-----------PAWQSLAPGASVELDMVY 140 (180)
T ss_pred EEEEEEC-----------CCccccCCCCEEEEeEEE
Confidence 6777777 788889999999998875
No 189
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=34.90 E-value=1.7e+02 Score=23.67 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=38.4
Q ss_pred eeeEecc---C-CCeeeEEEEEEcCCCCeEE-EEeeecC-CCceEE--eCCCeeeCCCCeEEEEEEe
Q 026266 13 ELKFPFE---L-KKQISCSLQLSNKTDNYVA-FKVKTTN-PKKYCV--RPNTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 13 eL~F~~~---~-~~~~~~~l~L~N~s~~~va-FKVKTT~-p~~Y~V--rP~~G~i~P~~s~~V~V~l 71 (241)
+.+|.+. + .+-+.-.|+++|.++..+. -+|.... +.--++ -|..+.|+||+++++.+-.
T Consensus 72 ~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 72 EYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred EEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 3567662 2 3557788999999997543 2333333 223344 4889999999998877654
No 190
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.73 E-value=49 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.602 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026266 221 FIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~ 239 (241)
..++++++.+|..+|+.+.
T Consensus 32 tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 32 TLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3466777777777777653
No 191
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.63 E-value=1.2e+02 Score=27.69 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=21.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFI 222 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~~~~~~g~~~~ 222 (241)
+++.++..+..-+.+-+++++....+.++++||++. +.++...|-|+.
T Consensus 291 e~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe---~G~~msDGaplv 338 (384)
T KOG0972|consen 291 ELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE---QGAKMSDGAPLV 338 (384)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH---hcccccCCchHH
Confidence 333334333333444444444444455555555442 333334566654
No 192
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.52 E-value=86 Score=27.12 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKN 192 (241)
Q Consensus 179 ea~~~i~~L~eE~~ 192 (241)
+..+...+|++|..
T Consensus 155 ~~~~~~~kL~~el~ 168 (216)
T KOG1962|consen 155 KLKADLEKLETELE 168 (216)
T ss_pred HHHhhHHHHHHHHH
Confidence 33333333333333
No 193
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.31 E-value=1.4e+02 Score=24.06 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=16.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
.++.++..+......|..|+..++.++..|-++
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554333
No 194
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=34.17 E-value=1.3e+02 Score=19.31 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=17.6
Q ss_pred cchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKD-------EKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 175 ~k~~ea~~~i~~L~e-------E~~~~~~q~~~l~~el~~l~ 209 (241)
.++.++.+.|..++. +...+.+++-.|+.++..+.
T Consensus 6 ~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 6 EEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554442 33445555556666665443
No 195
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=33.93 E-value=84 Score=25.95 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=19.2
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
.++|+..|.+.+++|..|+.-+..-.++-..|++.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45666666666666666665544433333344433
No 196
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.86 E-value=39 Score=26.56 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 026266 223 FVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~~~ 240 (241)
.|+.|.++.+||.|++++
T Consensus 73 v~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555667777764
No 197
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.74 E-value=77 Score=30.65 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 182 ALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 182 ~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+....++++++.+..+++.|+++++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555554443
No 198
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=33.48 E-value=25 Score=22.89 Aligned_cols=14 Identities=21% Similarity=0.750 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 026266 224 VILVGLVGIVLGYV 237 (241)
Q Consensus 224 v~~v~ll~~llgy~ 237 (241)
|++++++++++|-+
T Consensus 4 V~lL~~~~l~iGlm 17 (47)
T PF11772_consen 4 VLLLAILALAIGLM 17 (47)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555444
No 199
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.47 E-value=97 Score=25.67 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026266 189 DEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 189 eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+|...+.+|.++.+.|.+.|++|
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444443
No 200
>PRK09239 chorismate mutase; Provisional
Probab=33.46 E-value=1.3e+02 Score=22.66 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=16.5
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
.+++.++++...+|..|=.+|..+..+.-.++
T Consensus 13 ~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K 44 (104)
T PRK09239 13 AALRQSIDNIDAALIHMLAERFKCTQAVGVLK 44 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443
No 201
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=33.17 E-value=1.7e+02 Score=20.51 Aligned_cols=59 Identities=7% Similarity=0.063 Sum_probs=38.8
Q ss_pred CeeeEeccCCCeeeEEEEEEcCCC--CeEEEEeeec---CCCceEEeCCCeeeCCCCeEEEEEEe
Q 026266 12 LELKFPFELKKQISCSLQLSNKTD--NYVAFKVKTT---NPKKYCVRPNTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 12 ~eL~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKTT---~p~~Y~VrP~~G~i~P~~s~~V~V~l 71 (241)
-.+.+...........|.|.|-.. -.....|.+. +.+.|.+.++.+ |.++....|.|.-
T Consensus 15 ~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 15 ITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIVN 78 (93)
T ss_pred EEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEEE
Confidence 367777654456788999998765 2233444422 237899998776 6666678888873
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.92 E-value=1e+02 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=17.9
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
++..+++.+..+|.+|+.+...+..+.+++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555666666666666666655555555544
No 203
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=32.90 E-value=75 Score=26.23 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=43.6
Q ss_pred eeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCCCeEEEEEEecCCC
Q 026266 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDG 97 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (241)
.....-|.|-|+.++.|-.-+...+.|.+| +.|.|+|+..+-|.-.-.. ++ ..-.+..||-+.--.+
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~--eL----N~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKE--EL----NDLERVAVQLIAYKKD 84 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GG--GG----GG-SSEEEEEEEE-SS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHH--Hh----hccceeEEEEEEEcCC
Confidence 456778999999999999999888899988 6899999988776543222 11 1234555666554443
No 204
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.83 E-value=67 Score=27.80 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 026266 194 AVQQNNKL 201 (241)
Q Consensus 194 ~~~q~~~l 201 (241)
+.+++.+|
T Consensus 198 Llee~~~L 205 (216)
T KOG1962|consen 198 LLEEYSKL 205 (216)
T ss_pred HHHHHHHH
Confidence 33333333
No 205
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=32.61 E-value=1e+02 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+.+...++..+|..++..+.+|.+.|+++
T Consensus 58 qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 58 QIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445555555666665666666666554
No 206
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.60 E-value=1.5e+02 Score=25.10 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++..+...|..|+..+..|..+|+.++..|.++
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666555554
No 207
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.59 E-value=1.9e+02 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=18.7
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
--|+..+|.+.+|..|+||...|+-+|+.|
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777766655555555
No 208
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.54 E-value=1.1e+02 Score=26.57 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
++.+++..|+.|...+..+|+++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444433333333333
No 209
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=32.50 E-value=2.2e+02 Score=21.41 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
.+++.++++...+|..|=+||..+..+.-.++
T Consensus 7 ~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K 38 (102)
T TIGR01801 7 EDLRAEVDQLNRQILALISRRGEVVAQIGHAK 38 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777766666665554
No 210
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=32.45 E-value=64 Score=21.02 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026266 221 FIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~ 238 (241)
+.|.+++|+.-+.+.||+
T Consensus 11 ~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 11 LAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555565555555554
No 211
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=32.42 E-value=2.4e+02 Score=23.31 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 026266 226 LVGLVGIVLGYV 237 (241)
Q Consensus 226 ~v~ll~~llgy~ 237 (241)
+++..++++||+
T Consensus 128 fv~~~~~i~~y~ 139 (180)
T PF04678_consen 128 FVGYGTSILGYA 139 (180)
T ss_pred HHhHHHHHHHHH
Confidence 334444444443
No 212
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.41 E-value=93 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=12.6
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNN 199 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~ 199 (241)
+++....++..+-.+|..|.+.|+++|+
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 213
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=32.39 E-value=1.2e+02 Score=22.71 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 181 RALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 181 ~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
...+.+|+...+.+..+|..|.+++..+|+
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335666777777777788888777765543
No 214
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=32.10 E-value=2.2e+02 Score=25.61 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=11.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhcc
Q 026266 218 GVSFIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 218 g~~~~~v~~v~ll~~llgy~~~~ 240 (241)
||++..+++ +++++++.|+|++
T Consensus 297 Gy~~~l~~m-~~~~~~~~~~frr 318 (322)
T COG0598 297 GYPIALILM-LLLALLLYLYFRR 318 (322)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHh
Confidence 555544444 4445555555554
No 215
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=32.00 E-value=1.9e+02 Score=20.86 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
..+..+...+..|+..+..+.+-|++|+.+...++.
T Consensus 19 eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 19 EEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777777777788888888877665544
No 216
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=31.91 E-value=74 Score=18.51 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 026266 223 FVILVGLVGIVLGYVM 238 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~ 238 (241)
.+..+.++-.|+||+.
T Consensus 5 vi~G~ilv~lLlgYLv 20 (29)
T PRK14748 5 VITGVLLVFLLLGYLV 20 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555556667654
No 217
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.88 E-value=1.1e+02 Score=27.34 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=11.9
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
|..+..++...+..++++.+....+.++|+
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333333333
No 218
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=31.88 E-value=1.7e+02 Score=21.43 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=34.0
Q ss_pred cceEEeCCeeeEeccCCCeeeEEEEEEcCCC--CeEEEEeeecCCCceEEeC----CCeeeCCCCeEEEEEEe
Q 026266 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTD--NYVAFKVKTTNPKKYCVRP----NTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 5 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKTT~p~~Y~VrP----~~G~i~P~~s~~V~V~l 71 (241)
.-+.++|++|.+..- . .++++|.+. +.+.|.=.......-...+ +.+.+.||++.++.++-
T Consensus 10 g~~~F~P~~i~v~~G--~----~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 10 GALVFEPAKISIAAG--D----TVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CceeEeCCEEEECCC--C----EEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 446888988888743 2 367778743 5555532211111101111 34578999998886553
No 219
>PRK14127 cell division protein GpsB; Provisional
Probab=31.30 E-value=1.6e+02 Score=22.62 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=26.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+.-..|..+.+++..|++|...+.++...++.++...
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3334566777788888888888888888777665543
No 220
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.22 E-value=84 Score=20.34 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=8.8
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNA 194 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~ 194 (241)
.|..+..++|..|++-|+.|
T Consensus 19 qkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 34444444454444443333
No 221
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.20 E-value=1.1e+02 Score=22.19 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=21.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
.++.+...+.+.|.+|+++...+..+.+.++.++
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666677777776666666666555544
No 222
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.14 E-value=1.2e+02 Score=25.99 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQ 197 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q 197 (241)
++..+.......+++|..++.++
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~ 94 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQES 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666677766666554
No 223
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.60 E-value=86 Score=30.64 Aligned_cols=40 Identities=28% Similarity=0.254 Sum_probs=31.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+++.+.+.+.+...+|.+-++..++|..+|++|++.|.+.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 5 ELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566677777888888888888888888898888877543
No 224
>COG3771 Predicted membrane protein [Function unknown]
Probab=30.46 E-value=55 Score=24.26 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=15.9
Q ss_pred chH-HHHHHHHHHHHHHHHHhc
Q 026266 219 VSF-IFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 219 ~~~-~~v~~v~ll~~llgy~~~ 239 (241)
|-+ ..++.++.+||++||++-
T Consensus 39 f~LSTLla~lF~~G~~lgwli~ 60 (97)
T COG3771 39 FRLSTLLATLFAAGFALGWLIC 60 (97)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 444 467888889999999863
No 225
>PHA02849 putative transmembrane protein; Provisional
Probab=30.03 E-value=61 Score=23.48 Aligned_cols=19 Identities=26% Similarity=0.796 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 026266 221 FIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~ 239 (241)
..+++.++++.|+|-|+.+
T Consensus 21 ~v~v~vI~i~~flLlyLvk 39 (82)
T PHA02849 21 LVFVLVISFLAFMLLYLIK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577888899999988865
No 226
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=29.89 E-value=1.3e+02 Score=25.97 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=28.8
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|++.|+|..+|.|- ++.. -+. +. +.|.|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~-~~~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLN-SHE--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEEC-Ccc--cC-CCceECCCCccEEEc
Confidence 499999999999875 5543 222 22 368999999988874
No 227
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=29.87 E-value=32 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 026266 220 SFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 220 ~~~~v~~v~ll~~llgy~~~ 239 (241)
|++|++=.||=+.+|||+|+
T Consensus 68 SLLFaLQAAiGAgiIgY~lG 87 (100)
T PRK02898 68 SLLFALQAALGAGIIGYILG 87 (100)
T ss_pred HHHHHHHHHHhhhhhheeee
Confidence 45555555555555555554
No 228
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=29.46 E-value=18 Score=31.36 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=0.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+|...+..+++..+..|..|...++++|+.|+.|...|
T Consensus 125 EEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 125 EEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777777777777777888888877666555
No 229
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=29.33 E-value=1.3e+02 Score=26.20 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=27.5
Q ss_pred EEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 28 LQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 28 l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
|++.|+|..+|.|. ++- .-+. + ...+.|+|.++..+.+
T Consensus 164 l~v~NpTPyyvtl~~l~v-~~~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 164 ATVRNPTPYYVTLFLLRA-NERA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred EEEECCCCcEEEEEeEEE-cCcc--c-CCCceECCCCccEEec
Confidence 99999999999886 332 2222 2 2457899999888876
No 230
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=29.29 E-value=1.2e+02 Score=24.53 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=24.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
-++.+..++...+.+|+++...+.+....+.+++..+.
T Consensus 98 ~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 98 FLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777666666666666655433
No 231
>PRK11637 AmiB activator; Provisional
Probab=29.16 E-value=1.7e+02 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
+++.++|..++++...+.++...++
T Consensus 92 ~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 92 RETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 232
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=29.11 E-value=18 Score=24.19 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHH
Q 026266 219 VSFIFVILVGLVGIVLGY 236 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy 236 (241)
+++++.++|||+|+..++
T Consensus 3 ~p~~llllvlllGla~s~ 20 (56)
T PF08138_consen 3 TPIFLLLLVLLLGLAQSW 20 (56)
T ss_dssp ------------------
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 466778888899988874
No 233
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.03 E-value=1.5e+02 Score=23.96 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026266 194 AVQQNNKLRQDLELLR 209 (241)
Q Consensus 194 ~~~q~~~l~~el~~l~ 209 (241)
+.+++..++..+..|+
T Consensus 121 l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 121 LEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344443333
No 234
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.02 E-value=88 Score=20.06 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026266 222 IFVILVGLVGIVLGY 236 (241)
Q Consensus 222 ~~v~~v~ll~~llgy 236 (241)
++.-.++|+|||+|.
T Consensus 26 F~LT~~gll~~lv~l 40 (45)
T PF11688_consen 26 FGLTAVGLLGFLVGL 40 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344567778887764
No 235
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=29.01 E-value=3.1e+02 Score=22.34 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=24.3
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
..+.+.++-++++.+.+.|...+.++-+....+.+..
T Consensus 70 ~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~ 106 (157)
T PF14235_consen 70 AYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHA 106 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455666667777777777777777766666555543
No 236
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.89 E-value=1.8e+02 Score=21.41 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQ 197 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q 197 (241)
.+++.++...|+.|......|
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~q 52 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQ 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333
No 237
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=28.88 E-value=30 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=15.2
Q ss_pred CCchHHH-HHHHHHHHHHHHHHhcc
Q 026266 217 GGVSFIF-VILVGLVGIVLGYVMKK 240 (241)
Q Consensus 217 ~g~~~~~-v~~v~ll~~llgy~~~~ 240 (241)
.|..+.. +++.+|++||+.||+.+
T Consensus 69 agi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 69 AGISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred EEEEeehhhHHHHHHHHHhheeEEe
Confidence 3455543 44557778888887754
No 238
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=28.55 E-value=1.1e+02 Score=17.61 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 026266 219 VSFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~~ 239 (241)
.+.+.++.+++++. .+|++.
T Consensus 10 ~~~~~~~G~~l~~~-~~~~~~ 29 (34)
T TIGR01167 10 NSLLLLLGLLLLGL-GGLLLR 29 (34)
T ss_pred cHHHHHHHHHHHHH-HHHHhe
Confidence 34444444444544 555543
No 239
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=1.2e+02 Score=27.51 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=24.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+++-+.++-...+.+|+.+++.+-....-|++|+..|+.+
T Consensus 28 ~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~ 67 (404)
T KOG0728|consen 28 ELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEP 67 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 3333444444455666666666666666667777776654
No 240
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=28.45 E-value=2.5e+02 Score=20.94 Aligned_cols=33 Identities=6% Similarity=0.018 Sum_probs=25.3
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
+.+++.++++...+|..|=.||..+.++.-.++
T Consensus 10 L~~lR~~ID~ID~~iv~LL~eR~~~~~~ia~~K 42 (101)
T PRK07075 10 LDDIREAIDRLDRDIIAALGRRMQYVKAASRFK 42 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777888888888888888888877776665
No 241
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=28.44 E-value=1.4e+02 Score=25.92 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=27.6
Q ss_pred EEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|++.|+|..+|.|---.-.-+. + ....|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999998733322222 2 246899999888864
No 242
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=28.17 E-value=2.2e+02 Score=20.92 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.++.+++...++++.....+.+.|+++..
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555455555544333
No 243
>PRK06034 hypothetical protein; Provisional
Probab=28.11 E-value=3.4e+02 Score=24.42 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=23.9
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+.+++.++++...+|.+|=+||..+.++.-++|+
T Consensus 11 L~eLR~eID~ID~eLl~LL~eR~~lv~~Va~~K~ 44 (279)
T PRK06034 11 LAELRWEIDAIDEELHQLLMERGDIIDRLIAVKR 44 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777777777777777777777776655543
No 244
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.01 E-value=1.6e+02 Score=22.23 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=23.8
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.+++.+.......|..|++....+..+...+++++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677777777777777666666666544
No 245
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=27.83 E-value=87 Score=27.71 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
.+|.+.|+.|++|+..|+.|..++
T Consensus 118 ~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 118 EAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778899999998888888766
No 246
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.81 E-value=1.6e+02 Score=22.52 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
+..+++|...|.+++..|+.|.+.|++..
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888777653
No 247
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.69 E-value=1.2e+02 Score=28.55 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+++.+...+..++..|+++...+.++.+++++|+..++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344556666677777777777777777777777776654
No 248
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.65 E-value=1.2e+02 Score=27.78 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=25.1
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
++.++.+++.++..++.|...+.++.+++++++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456666667777777777777777777777665543
No 249
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=27.50 E-value=1.7e+02 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+..++.+..++..|.+|.+.|+.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~ 70 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKK 70 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555444444
No 250
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.41 E-value=3e+02 Score=21.44 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
.+...+.++..|++|..++.++++.+.+|
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~E 52 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREE 52 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444333
No 251
>PRK07857 hypothetical protein; Provisional
Probab=27.15 E-value=2.2e+02 Score=21.76 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=18.9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
.+++.++++...+|..|=.||..+.++.-+++
T Consensus 31 ~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K 62 (106)
T PRK07857 31 DELREEIDRLDAEILALVKRRTEVSQAIGKAR 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666555555553
No 252
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.13 E-value=1.8e+02 Score=22.67 Aligned_cols=14 Identities=14% Similarity=0.572 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q 026266 225 ILVGLVGIVLGYVM 238 (241)
Q Consensus 225 ~~v~ll~~llgy~~ 238 (241)
+++.++.++|-|++
T Consensus 101 v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 101 VIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444455554
No 253
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=26.97 E-value=1.9e+02 Score=25.27 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCeEEEE-eeecCC-CceEEeCCCeeeCCCCeEEEEEE
Q 026266 26 CSLQLSNKTDNYVAFK-VKTTNP-KKYCVRPNTGIVLPRSTCDIIVT 70 (241)
Q Consensus 26 ~~l~L~N~s~~~vaFK-VKTT~p-~~Y~VrP~~G~i~P~~s~~V~V~ 70 (241)
..|+++|+|..++.|- ++-... +.+.+ ..+.|.|+++..+.+-
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEecC
Confidence 4499999999999875 432222 22222 3478999998888653
No 254
>PRK10722 hypothetical protein; Provisional
Probab=26.92 E-value=1.7e+02 Score=25.87 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026266 188 KDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 188 ~eE~~~~~~q~~~l~~el 205 (241)
..+++.+++|+..|+.++
T Consensus 175 D~qlD~lrqq~~~Lq~~L 192 (247)
T PRK10722 175 DSELDALRQQQQRLQYQL 192 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555554433
No 255
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.92 E-value=72 Score=23.97 Aligned_cols=20 Identities=15% Similarity=0.507 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q 026266 219 VSFIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~ 238 (241)
|.-++..+-+|+||+.||+-
T Consensus 27 ~~q~ilti~aiVg~i~Gf~~ 46 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIYGFAQ 46 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667777888999999864
No 256
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.79 E-value=1.5e+02 Score=26.97 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=4.6
Q ss_pred ccchHHHHHHHH
Q 026266 174 QDKSTEARALIS 185 (241)
Q Consensus 174 ~~k~~ea~~~i~ 185 (241)
+..+.+....|.
T Consensus 215 r~eL~~~~~~i~ 226 (325)
T PF08317_consen 215 RQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 257
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=26.76 E-value=2.4e+02 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+++|+...+++ .+++++++++++.
T Consensus 219 nL~e~l~~ls~-------vireRkk~~~Kv~ 242 (309)
T COG4965 219 NLSELLDNLSR-------VIRERKKMKAKVR 242 (309)
T ss_pred CHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 45555554444 4455555555443
No 258
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.63 E-value=1e+02 Score=23.70 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=27.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
..+..+..+++.++.|...+.+++..|.+|...|+..
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456677778888888888888888888887776643
No 259
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=26.60 E-value=2.2e+02 Score=21.96 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
++.-|+++...+.+.|..|++|-.+||.
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555666666555554
No 260
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.57 E-value=1.2e+02 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
..+++.+++..|.++++++.++.+.+++++..++
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666677777777777777777766655444
No 261
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=26.49 E-value=41 Score=24.51 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 026266 222 IFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~~~~ 240 (241)
.-.+=++.-+++.|||+++
T Consensus 56 ~~La~L~~~~mm~GYfLr~ 74 (86)
T PF05542_consen 56 ENLAQLLAWSMMTGYFLRN 74 (86)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3566777889999999985
No 262
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=26.33 E-value=2e+02 Score=18.93 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=40.5
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEe-CCCe---eeCCCCeEEEEEEec
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-PNTG---IVLPRSTCDIIVTMQ 72 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~Vr-P~~G---~i~P~~s~~V~V~lq 72 (241)
|.|-|+.|.+.........+.+.-.--.....-+.+++..-....+. ++.. .+.+|+.+.|.+...
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~~ 70 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDPD 70 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEGG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECcc
Confidence 46788877774222335666666555566777777888777664443 5544 688999888877543
No 263
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=26.23 E-value=2.1e+02 Score=21.54 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=23.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
+|+-++.=++.+-.-|..-...+..||+.|..|+..++...
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554444444444445556677777777777666543
No 264
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.05 E-value=1.7e+02 Score=24.10 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
.+.++...+..|+.|...+.++...+++
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 265
>PRK14160 heat shock protein GrpE; Provisional
Probab=26.02 E-value=1.7e+02 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+..+.+.+..|+++...+..+...++.+.+..|+
T Consensus 62 e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 62 ENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333
No 266
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=25.96 E-value=97 Score=28.55 Aligned_cols=69 Identities=29% Similarity=0.404 Sum_probs=39.6
Q ss_pred CCCCcc-eEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecC----------CCceE-----EeCCCe-eeCCC
Q 026266 1 MSTGEL-LSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN----------PKKYC-----VRPNTG-IVLPR 62 (241)
Q Consensus 1 m~~~~l-l~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~----------p~~Y~-----VrP~~G-~i~P~ 62 (241)
||++.+ |++.=+ ||.|.++ .++.+++++|+|++.| =|||... ...|. ..-.-| -|.||
T Consensus 190 mS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtV-KkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~Pg 265 (402)
T KOG3865|consen 190 MSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTV-KKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAPG 265 (402)
T ss_pred cCCCceEEEEEecchheecCC---ceeEEEEEecCCccee-eeeEEEeEeeceEEEEecccccceeeeeecccCCccCCC
Confidence 566333 334443 7877765 5899999999988755 3555421 11111 111222 46778
Q ss_pred CeEEEEEEecc
Q 026266 63 STCDIIVTMQA 73 (241)
Q Consensus 63 ~s~~V~V~lq~ 73 (241)
++..=..++-|
T Consensus 266 stl~Kvf~l~P 276 (402)
T KOG3865|consen 266 STLSKVFTLTP 276 (402)
T ss_pred CeeeeeEEech
Confidence 87776666655
No 267
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=25.95 E-value=1.6e+02 Score=30.79 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=15.5
Q ss_pred hhhhccccCceeeEEEeEEEEeCC
Q 026266 105 AEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 105 ~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
+++|.. +.+.+++=+|+|+++
T Consensus 262 Pnf~~~---sdl~~~~~pvv~i~~ 282 (980)
T KOG0980|consen 262 PNFLRQ---SDLESYITPVVYIPS 282 (980)
T ss_pred cccccc---cchhhcCCCceecCC
Confidence 466654 347889999999965
No 268
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.80 E-value=2.4e+02 Score=20.47 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=21.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
++-.+..++...+..|-........++.+|++|-..|+.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555566666666666555544
No 269
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.75 E-value=1.2e+02 Score=21.42 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
.+..+++.+.+++..+++|.+.|..|...|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456777888888889999888888888885
No 270
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=25.73 E-value=2.5e+02 Score=23.17 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=9.5
Q ss_pred chHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKN 192 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~ 192 (241)
|..+..++|..+++|++
T Consensus 45 k~~q~~~ei~dmKqeln 61 (175)
T KOG4253|consen 45 KESQKVAEIQDMKQELN 61 (175)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555666665554
No 271
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=25.72 E-value=75 Score=21.02 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 026266 221 FIFVILVGLVGIVL 234 (241)
Q Consensus 221 ~~~v~~v~ll~~ll 234 (241)
+.++.+++++|+++
T Consensus 19 Li~A~vlfi~Gi~i 32 (50)
T PF02038_consen 19 LIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55667777777765
No 272
>PF15058 Speriolin_N: Speriolin N terminus
Probab=25.71 E-value=98 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
|.-++.+|.+|-.|..+|.++.+-+++
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444566777777776666666665554
No 273
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=25.57 E-value=3.2e+02 Score=23.69 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=37.5
Q ss_pred eeeEEEEE-EcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecc
Q 026266 23 QISCSLQL-SNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQA 73 (241)
Q Consensus 23 ~~~~~l~L-~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~ 73 (241)
...+.++| .|.......|--....++.|. .++.-.+.+|.+..+.|....
T Consensus 60 v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~-~~~~~~~~~G~~Y~L~V~~~~ 110 (298)
T PF14054_consen 60 VSGATVTIYEDGQGNEYLFEESSNNDGVYY-SSNSFRGRPGRTYRLEVETPG 110 (298)
T ss_pred cCCcEEEEEeCCCcceEeecccCCCcceEE-ecccccccCCCEEEEEEEECC
Confidence 35689999 777777777766655447887 444448999999999999853
No 274
>PRK11637 AmiB activator; Provisional
Probab=25.41 E-value=2.7e+02 Score=26.15 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=12.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
.+++++..+|..+++++..+.++...+++
T Consensus 96 ~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 96 NTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 275
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=25.01 E-value=84 Score=19.07 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026266 222 IFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~~~ 239 (241)
.+..++.++++++.|+++
T Consensus 17 giay~Lm~~Al~~tyl~H 34 (34)
T PF06376_consen 17 GIAYMLMLVALVVTYLFH 34 (34)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 456777788888888875
No 276
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=25.00 E-value=1.1e+02 Score=20.55 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=12.5
Q ss_pred eeEEEEEEcCCCCeEEEEe
Q 026266 24 ISCSLQLSNKTDNYVAFKV 42 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKV 42 (241)
+...-++...+.+.||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 3444445555668999996
No 277
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.95 E-value=1.5e+02 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=27.2
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+-.+.+..|+++++.++.++...+++|.++|+.+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888888765
No 278
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=24.93 E-value=1.6e+02 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
..+|++....|.+||+-|+-+.+
T Consensus 74 ~~rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 74 VLRLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666654433
No 279
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=24.91 E-value=76 Score=22.29 Aligned_cols=21 Identities=33% Similarity=0.456 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 026266 219 VSFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~~ 239 (241)
.+...-+++.++|+.+||...
T Consensus 31 ~~~q~~ll~vllaIalGylvs 51 (68)
T TIGR02327 31 NVGQLRVLVVLIAIALGYTVS 51 (68)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 344555677778888888753
No 280
>PRK14163 heat shock protein GrpE; Provisional
Probab=24.90 E-value=2.2e+02 Score=24.60 Aligned_cols=23 Identities=4% Similarity=0.071 Sum_probs=10.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNA 194 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~ 194 (241)
+++.++.++.+++..|++...++
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~ 66 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRL 66 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 281
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.75 E-value=1.6e+02 Score=21.98 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=17.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 174 ~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
+.+...+.+.+.+|.++...+..+...+++.+..
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444443
No 282
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=24.47 E-value=3.3e+02 Score=23.17 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=15.2
Q ss_pred hhhhccchHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNN 193 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~ 193 (241)
.++|+..|++++++|..|+.=+..
T Consensus 46 keelr~EL~kvEeEI~TLrqVLaA 69 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTLRQVLAA 69 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777766654443
No 283
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.28 E-value=54 Score=29.43 Aligned_cols=17 Identities=6% Similarity=0.290 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhccC
Q 026266 225 ILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 225 ~~v~ll~~llgy~~~~~ 241 (241)
++..+|-+||+|+++++
T Consensus 281 La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 281 LAGLVLIVLIAYLIGRR 297 (306)
T ss_pred HHHHHHHHHHhheeEec
Confidence 34444555678988763
No 284
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=24.28 E-value=1.9e+02 Score=23.49 Aligned_cols=43 Identities=26% Similarity=0.586 Sum_probs=30.3
Q ss_pred eeEeccCC-CeeeEEEEEEcC---CCCeEEEEeeec------CCCceEEeCCC
Q 026266 14 LKFPFELK-KQISCSLQLSNK---TDNYVAFKVKTT------NPKKYCVRPNT 56 (241)
Q Consensus 14 L~F~~~~~-~~~~~~l~L~N~---s~~~vaFKVKTT------~p~~Y~VrP~~ 56 (241)
|+|....+ +-..|.++|.-- ....|+|++|-+ -+.-+|++||.
T Consensus 102 Lry~vkDG~~~~~C~m~v~TwA~~~~~~i~Fq~kiel~~A~~~~stiCthPnl 154 (156)
T PF11668_consen 102 LRYRVKDGTRWEMCIMRVQTWAHTKSNYIQFQVKIELTHAYRQPSTICTHPNL 154 (156)
T ss_pred EEEEeccCCceeeEEEEeeehhhhhcccEEEEEEEEEeeccCCccceeccccc
Confidence 67766554 557899998763 235599999833 46678999984
No 285
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.23 E-value=1.9e+02 Score=24.03 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
++.+....|..|+.++..+..+...+
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDL 135 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333333333
No 286
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.21 E-value=94 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=19.7
Q ss_pred eeEEEEEEcCCCCeEEEEeeecCCC
Q 026266 24 ISCSLQLSNKTDNYVAFKVKTTNPK 48 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~ 48 (241)
..-+|++.+-...-+-||||.++|-
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~L 43 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPL 43 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChH
Confidence 4567778886667889999999884
No 287
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=24.19 E-value=1.7e+02 Score=20.57 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=22.3
Q ss_pred EEEEEcCCCCeEEE-----EeeecCCCce-EEeCCCeeeCCCCeEEEEEEe
Q 026266 27 SLQLSNKTDNYVAF-----KVKTTNPKKY-CVRPNTGIVLPRSTCDIIVTM 71 (241)
Q Consensus 27 ~l~L~N~s~~~vaF-----KVKTT~p~~Y-~VrP~~G~i~P~~s~~V~V~l 71 (241)
+|+++|++...+-| .|.--.-..- ...+..+.++|+++..+.+.+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 46788887633333 2222111111 345556667777766665544
No 288
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.11 E-value=89 Score=23.85 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
++++...+..|..|+..+.+++..|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333
No 289
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=24.09 E-value=1.1e+02 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH--HHHhc
Q 026266 223 FVILVGLVGIVL--GYVMK 239 (241)
Q Consensus 223 ~v~~v~ll~~ll--gy~~~ 239 (241)
+.+.+|+++||+ ||++.
T Consensus 17 igltv~f~~~L~PagWVLs 35 (44)
T PF02285_consen 17 IGLTVCFVTFLGPAGWVLS 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 345555555555 56654
No 290
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.08 E-value=5.3e+02 Score=26.09 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 026266 223 FVILVGLVGIVLG 235 (241)
Q Consensus 223 ~v~~v~ll~~llg 235 (241)
++++.+++|+++|
T Consensus 433 ~l~~~~~~gl~lg 445 (754)
T TIGR01005 433 IVGLAAVLGLLLG 445 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 291
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.07 E-value=2.6e+02 Score=20.07 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=12.7
Q ss_pred hhhccchHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLK 188 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~ 188 (241)
++++.|+.++++.|..|-
T Consensus 31 ~~lk~Klq~ar~~i~~lp 48 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELP 48 (83)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 467778888887777643
No 292
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=23.99 E-value=1.9e+02 Score=25.23 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=27.2
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|++.|+|..+|.|- ++- .-+. + .+.+.|.|.++..+.+
T Consensus 170 ~l~v~NpTPYyvtl~~l~~-~~~~--~-~~~~miaPfs~~~~~~ 209 (237)
T PRK15224 170 KLKVENPTPFYMNLASVTV-GGKP--I-TGLEYIPPFADKTLNM 209 (237)
T ss_pred EEEEECCCCcEEEeEeEEE-CCcc--c-CCceeECCCCccEEEc
Confidence 499999999999875 333 2222 3 2247899999887764
No 293
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=23.98 E-value=1.7e+02 Score=19.44 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.+.+.|.+|. .+|..|+.++..+
T Consensus 26 ~a~~rl~~l~-------~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 26 AARKRLSKLE-------GENRLLRAELERL 48 (52)
T ss_pred hHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3444555555 4555556555544
No 294
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.87 E-value=2.1e+02 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=24.3
Q ss_pred hhhhccchHHH-----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEA-----RALISKLKDEK--NNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 170 ~~~l~~k~~ea-----~~~i~~L~eE~--~~~~~q~~~l~~el~~l~~ 210 (241)
+++||.+|.-. +.+|.+.+.++ ..+++|.++|+|=++.+|.
T Consensus 91 I~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 91 IDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666665532 33566666653 3566777777776665553
No 295
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.63 E-value=2.5e+02 Score=19.95 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026266 189 DEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 189 eE~~~~~~q~~~l~~el~ 206 (241)
+|...+.+|+-+|+.|+.
T Consensus 46 ~ev~~LKKqkL~LKDEi~ 63 (72)
T COG2841 46 AEVSNLKKQKLQLKDEIA 63 (72)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 356778888888888876
No 296
>PRK02119 hypothetical protein; Provisional
Probab=23.63 E-value=2.4e+02 Score=19.87 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
-+.+++..+.+...+...+.++.+.|.+++..+
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666677777777777777777777666544
No 297
>PF14645 Chibby: Chibby family
Probab=23.60 E-value=1.6e+02 Score=22.78 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026266 184 ISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~e 204 (241)
..+|+++.+.+.+||+-|+=+
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk 93 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLK 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666543
No 298
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.55 E-value=2e+02 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 181 RALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 181 ~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.+.|..|+++...+...++.|..++.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554444444444444444
No 299
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=23.47 E-value=52 Score=24.21 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=14.4
Q ss_pred EEEeeecCCC--ceEEeCCCeeeC
Q 026266 39 AFKVKTTNPK--KYCVRPNTGIVL 60 (241)
Q Consensus 39 aFKVKTT~p~--~Y~VrP~~G~i~ 60 (241)
+||+|+.+-+ ||.+.|+.|+-+
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~ 25 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEE 25 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHH
Confidence 6888876544 566667776543
No 300
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.31 E-value=2.2e+02 Score=21.65 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=28.2
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.-||+.-++.+.+.+...+||.-.++.||+.|.|=.+.|
T Consensus 65 VLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 65 VLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 456777777777777778888777888888777655543
No 301
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=23.27 E-value=2e+02 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=12.9
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
|+..-......|.+-+++++.|..|-..+
T Consensus 6 Le~ek~~~~~rI~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 6 LEEEKQRRRERIKKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444
No 302
>PHA02047 phage lambda Rz1-like protein
Probab=23.27 E-value=3.3e+02 Score=20.54 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=24.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.+.+.+++.-++..+..+++..+.+.+..++-.+|+.
T Consensus 36 a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~ 72 (101)
T PHA02047 36 AKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVD 72 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888887777766666555455544
No 303
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=23.19 E-value=2.2e+02 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.-.|++.++.++++|+..|+|-...-+.....|+++.
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4467777888888888766554443334455666653
No 304
>smart00605 CW CW domain.
Probab=23.13 E-value=1e+02 Score=22.38 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=14.2
Q ss_pred EEEEEcC-CCCeEEEEeeecCCC
Q 026266 27 SLQLSNK-TDNYVAFKVKTTNPK 48 (241)
Q Consensus 27 ~l~L~N~-s~~~vaFKVKTT~p~ 48 (241)
.++-.+. +...||||+.++.+.
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCCC
Confidence 3444444 458899999876544
No 305
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.04 E-value=1.1e+02 Score=25.34 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+.++...++.+|++|......+.+.|+++.+.+.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777777777766677777666555443
No 306
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.96 E-value=1.8e+02 Score=19.91 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQ 197 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q 197 (241)
.|+.+.|..|+.|..++..+
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444333
No 307
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.88 E-value=5.1e+02 Score=22.52 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=14.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHh
Q 026266 217 GGVSFIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 217 ~g~~~~~v~~v~ll~~llgy~~ 238 (241)
.||.-.++|.+.|+|.+--|.|
T Consensus 65 ~~y~~~~~It~~llgs~slymf 86 (251)
T COG5415 65 HGYRPYLVITALLLGSGSLYMF 86 (251)
T ss_pred cccchhHHHHHHHHhhhHHHHH
Confidence 6777777877777774444443
No 308
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.69 E-value=1.1e+02 Score=22.47 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=20.9
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
++++++.++++++..++.+++.+..+..-|
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777777777777777766665544
No 309
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=22.56 E-value=1.1e+02 Score=18.96 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q 026266 219 VSFIFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 219 ~~~~~v~~v~ll~~llgy~~~ 239 (241)
+-.+-++.+.+..+++||.+.
T Consensus 16 Wi~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 16 WIAFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 434444555555667777653
No 310
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=22.54 E-value=1e+02 Score=22.25 Aligned_cols=20 Identities=45% Similarity=0.695 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 026266 222 IFVILVGLVGIVLGYVMKKS 241 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~~~~~ 241 (241)
+.+++++++|..+|++|-++
T Consensus 54 lll~~~~~vg~f~g~vmik~ 73 (78)
T PF07297_consen 54 LLLLGLSGVGTFLGYVMIKS 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 46678888999999988654
No 311
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.51 E-value=2.4e+02 Score=19.86 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
.|+++......-..+...|..++..|.+.+
T Consensus 29 sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 29 SYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444443333
No 312
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.48 E-value=3.1e+02 Score=21.05 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=19.8
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
++|..+-+++++....|+.++.+..+....|+.+++
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455566666666666655555555554444
No 313
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.38 E-value=4.4e+02 Score=22.96 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 026266 216 RGGVSFIFVILVGLVGIVLGYV 237 (241)
Q Consensus 216 ~~g~~~~~v~~v~ll~~llgy~ 237 (241)
+..+-+..|+.+|++-+|+-||
T Consensus 209 rdslILa~Vis~C~llllfy~~ 230 (231)
T KOG3208|consen 209 RDSLILAAVISVCTLLLLFYWI 230 (231)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3567777889999988877665
No 314
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=22.35 E-value=2.2e+02 Score=24.76 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=27.5
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|++.|+|..+|.|- ++- .-+. + .+.+.|+|.++..+.+
T Consensus 168 ~l~v~NpTPyyvtl~~l~~-~~~~--~-~~~~mi~Pfs~~~~~~ 207 (236)
T PRK11385 168 GVQLTNPTPYYINLIQVSV-NGKA--L-SNAGVVPPKSQRQTSW 207 (236)
T ss_pred EEEEECCCCcEEEEEeEEE-CCcc--c-CCCceECCCCccEEec
Confidence 499999999999874 443 2222 2 2356899999888865
No 315
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.26 E-value=1.3e+02 Score=27.32 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+...|++|++.+++|++.++.+
T Consensus 40 ~~~~lr~e~~~l~~~~~~~~~~ 61 (308)
T PF11382_consen 40 QFDSLREENDELRAELDALQAQ 61 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 316
>PRK06285 chorismate mutase; Provisional
Probab=22.18 E-value=3e+02 Score=20.21 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=22.1
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+.+++.++++...+|..|=.+|..+.++.-.++.
T Consensus 9 L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~ 42 (96)
T PRK06285 9 LNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777766666655543
No 317
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.98 E-value=2e+02 Score=28.76 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=13.2
Q ss_pred CeeeCCCCeEEEEEEeccc
Q 026266 56 TGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 56 ~G~i~P~~s~~V~V~lq~~ 74 (241)
.|+|.|..+-+|.|..+|-
T Consensus 210 ~g~V~~m~~~Dv~V~I~pV 228 (652)
T COG2433 210 PGVVKPMRGGDVQVRIEPV 228 (652)
T ss_pred hhhcccccCCceEEEEEEh
Confidence 3666777777777777763
No 318
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.95 E-value=2.6e+02 Score=22.81 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
..+.+....+.+++++...+..++.+++.+...++
T Consensus 98 ~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 98 QELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433333
No 319
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.94 E-value=3.4e+02 Score=20.92 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=24.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
+++.++.-....|..|++....+.++...+++++..+-
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666777777777777777777766655443
No 320
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=21.74 E-value=3.3e+02 Score=20.38 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.+++++++|..+-.|.-.|..++-.+=.++..+++.
T Consensus 5 ~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~ 40 (102)
T TIGR01801 5 SLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSA 40 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889888888888888888887777777654
No 321
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.68 E-value=2.8e+02 Score=22.06 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=17.4
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
+++.++.++.+++..|+++...+..+.+.++
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555554444444
No 322
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.64 E-value=2.3e+02 Score=23.60 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=14.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
++.....+...|..|.++......-++.|+.|+.
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444
No 323
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=21.58 E-value=2.3e+02 Score=22.41 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDLELLRREGK 213 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el~~l~~~~~ 213 (241)
+..|-.++..+.||.+.|-+++..|+.+.+
T Consensus 102 L~~llaqLealsqqL~~ls~qv~~L~~~~~ 131 (135)
T PHA03385 102 LLVLLAQLEALSQQLQELSQQVAQLREQTQ 131 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 334444455667777777777777776543
No 324
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.57 E-value=1.2e+02 Score=19.98 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026266 222 IFVILVGLVGIVLGYVMK 239 (241)
Q Consensus 222 ~~v~~v~ll~~llgy~~~ 239 (241)
.+.+++++|++++-.+.|
T Consensus 8 ~i~iv~~lLg~~I~~~~K 25 (50)
T PF12606_consen 8 SIFIVMGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345566666666655554
No 325
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=21.55 E-value=1.8e+02 Score=29.06 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+..++.+|.+|+.|+..|++|+..+..+|..++++
T Consensus 513 I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 513 ILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQ 547 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777777777776665555544443
No 326
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.40 E-value=2.3e+02 Score=24.55 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+++.++.+++.|.+.+..+.+.|.+..+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566777777777777777777766544
No 327
>PRK14140 heat shock protein GrpE; Provisional
Probab=21.37 E-value=2.6e+02 Score=23.63 Aligned_cols=19 Identities=32% Similarity=0.428 Sum_probs=8.2
Q ss_pred hhccchHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDE 190 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE 190 (241)
++++++.++.+++..|++.
T Consensus 41 ~l~~~i~~l~~ei~elkd~ 59 (191)
T PRK14140 41 EEQAKIAELEAKLDELEER 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 328
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=21.35 E-value=4.1e+02 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHHHHHHHh
Q 026266 218 GVSFIFVILVGLVGIVLGYVM 238 (241)
Q Consensus 218 g~~~~~v~~v~ll~~llgy~~ 238 (241)
.|.-..+++.|=++|++|.++
T Consensus 76 ~f~r~~lAlAASVAFv~Gl~~ 96 (232)
T PF11859_consen 76 RFARWHLALAASVAFVVGLSF 96 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 329
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.27 E-value=2.2e+02 Score=21.43 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=19.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.++.+...+...+..|+++...+.++...++.++.
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666665555555555554443
No 330
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=21.18 E-value=3.4e+02 Score=19.82 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCeeeEEEEEEcCCCCe--EEEEeeecCCCceEEeCC
Q 026266 21 KKQISCSLQLSNKTDNY--VAFKVKTTNPKKYCVRPN 55 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VrP~ 55 (241)
+......+.|+|.++.+ +.||+-==...-+.|.|.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~ 59 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE 59 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC
Confidence 67789999999999765 777776656667777665
No 331
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=21.07 E-value=1.3e+02 Score=17.94 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 026266 223 FVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~~~ 240 (241)
++..+.|+|..+||++-|
T Consensus 11 i~~~LvlvGlalGf~LLk 28 (32)
T PRK11876 11 LFWVLIPVGLAGGALLLK 28 (32)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 446667778889988754
No 332
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=20.91 E-value=89 Score=20.31 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l 201 (241)
.++.|++|.+.+++-|+.|
T Consensus 19 rv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eHHHHHHHHHHHHHHhHHH
Confidence 4555666666666666665
No 333
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.88 E-value=3.5e+02 Score=23.40 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=23.8
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
..++...+..+.+++..|+..++.+.++....+++++.|.++
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666655555555555555544443
No 334
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.85 E-value=3.5e+02 Score=26.59 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=38.7
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNR-GGVSFIFVILVGLVG 231 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~~~~~-~g~~~~~v~~v~ll~ 231 (241)
.+++++..+....+..|.++...++++...++.++..+++...+.. .|.|--+.-.+..++
T Consensus 389 ~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~ 450 (560)
T PF06160_consen 389 EEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVS 450 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3444555556666667777666777777777777777777665555 788765554444433
No 335
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.84 E-value=3.3e+02 Score=21.49 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=29.6
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
..|++++.+.++.+...++.-...|.+..+.|...+.
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999988888877888888887754443
No 336
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.77 E-value=2.8e+02 Score=28.25 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+..+++.++.+|+.|.....++...+++|+..||.
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666665555555555555555554544
No 337
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=20.66 E-value=46 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
++...+..|..+...+.+++..|++++.
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~ 49 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIE 49 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 338
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.62 E-value=6.2e+02 Score=23.52 Aligned_cols=10 Identities=0% Similarity=0.205 Sum_probs=5.9
Q ss_pred EEEeEEEEeC
Q 026266 118 ECKLRVIYVS 127 (241)
Q Consensus 118 ~~kL~v~~~~ 127 (241)
..-+.+.|..
T Consensus 131 s~ii~is~~~ 140 (444)
T TIGR03017 131 SSVISIEFSG 140 (444)
T ss_pred ceEEEEEEeC
Confidence 3456666665
No 339
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=20.61 E-value=2.3e+02 Score=24.46 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=28.0
Q ss_pred EEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|+++|+|..+|.|.=-. .-+. +....+.|.|.++..+.+
T Consensus 160 ~l~v~NpTPyyitl~~l~-~~~~--~~~~~~mi~Pfs~~~~~~ 199 (226)
T PRK15218 160 SISVKNNSANWITIPEIK-AKSK--VNKETLLLAPWSSQSITT 199 (226)
T ss_pred EEEEECCCCcEEEeEeee-cCCc--ccCCcceECCCCccEEEc
Confidence 499999999999986322 2233 222346899999888864
No 340
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.55 E-value=2.9e+02 Score=23.68 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026266 224 VILVGLVGIVLGYVMKK 240 (241)
Q Consensus 224 v~~v~ll~~llgy~~~~ 240 (241)
+++++++++++.|+|+|
T Consensus 276 ~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 276 LGLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHheeC
Confidence 45566666666666664
No 341
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.45 E-value=2.9e+02 Score=23.95 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 026266 193 NAVQQNNKLRQ 203 (241)
Q Consensus 193 ~~~~q~~~l~~ 203 (241)
.|..|++.|+.
T Consensus 157 dL~~QRe~L~r 167 (220)
T KOG1666|consen 157 DLHGQREQLER 167 (220)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 342
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.38 E-value=2.4e+02 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHHH
Q 026266 177 STEARALISKLKD 189 (241)
Q Consensus 177 ~~ea~~~i~~L~e 189 (241)
+..+...+.++++
T Consensus 72 ~~~l~~~i~~~~~ 84 (302)
T PF10186_consen 72 LERLRERIERLRK 84 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 343
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=20.35 E-value=76 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~ 202 (241)
.|.+|++|+...+...++-+
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~ 21 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKK 21 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46667776665555444433
No 344
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.33 E-value=2.8e+02 Score=25.84 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 026266 192 NNAVQQNNKLRQDLELLRREGKKNRGGV 219 (241)
Q Consensus 192 ~~~~~q~~~l~~el~~l~~~~~~~~~g~ 219 (241)
..++++...++.++..++.+.....+|+
T Consensus 269 e~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 269 EPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444444444444444444433333333
No 345
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.24 E-value=2.7e+02 Score=23.29 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026266 190 EKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 190 E~~~~~~q~~~l~~el~~l~ 209 (241)
||..+.++.+.|++++..|+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~ 123 (188)
T PF03962_consen 104 EREELLEELEELKKELKELK 123 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 346
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=20.23 E-value=2.5e+02 Score=24.52 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=32.7
Q ss_pred eeeEeccCCCeeeEEEEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 13 ELKFPFELKKQISCSLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 13 eL~F~~~~~~~~~~~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|.|... ...|++.|+|..++.|. ++- .-+ .+....+.|.|.++..+.+
T Consensus 166 ~L~~~~~-----g~~l~v~NpTPyyvtl~~l~~-~~~--~~~~~~~mi~Pfs~~~~~~ 215 (242)
T PRK15253 166 RIGLFRS-----NKTVIMKNDTANWITVTDVKA-GNT--KINDQTIMLPPLSTQNINM 215 (242)
T ss_pred ceEEEEc-----CCEEEEECCCCcEEEeEeeEE-CCc--ccCCCCceECCCCccEEec
Confidence 4666642 12499999999999986 332 222 2333456899999888764
No 347
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.19 E-value=3.3e+02 Score=26.72 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=25.3
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
...+..++..+++.-..+.+|...+.+....|++||..-|
T Consensus 443 c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 443 CRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666777667677777777766433
No 348
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=20.18 E-value=1.3e+02 Score=19.76 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 026266 223 FVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~~~ 240 (241)
+.++-.+++++.|+++++
T Consensus 5 ~y~~~~~~~l~~~~il~~ 22 (54)
T PF07664_consen 5 LYLLGILVALLVGLILKK 22 (54)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 335556667777777763
No 349
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=20.16 E-value=77 Score=28.63 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcc
Q 026266 217 GGVSFIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 217 ~g~~~~~v~~v~ll~~llgy~~~~ 240 (241)
..+|+.+++...|+-++||||+.|
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeE
Confidence 457788888888888889998765
No 350
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=2.5e+02 Score=30.60 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=54.8
Q ss_pred ceEEeCCeeeEeccC-CCeeeEEEEEEcCCCCeEEEEeee-cCCCceEEe---CCCeeeCCCCeEEE-EEEecccccCCC
Q 026266 6 LLSIEPLELKFPFEL-KKQISCSLQLSNKTDNYVAFKVKT-TNPKKYCVR---PNTGIVLPRSTCDI-IVTMQAQKEAPP 79 (241)
Q Consensus 6 ll~i~P~eL~F~~~~-~~~~~~~l~L~N~s~~~vaFKVKT-T~p~~Y~Vr---P~~G~i~P~~s~~V-~V~lq~~~~~p~ 79 (241)
-|.+.|.+|.|.-.| ++-+++.|.|.|.-+++|.-|=-+ .-+-+|+-+ -|-+.|+||.-..| .|.+.+
T Consensus 526 sL~~iPeqi~f~ptFPgK~v~~~L~i~nSF~~~v~v~~i~l~edvrf~fk~f~~n~~~l~pg~ltk~griyFdP------ 599 (1626)
T KOG3620|consen 526 SLEIIPEQISFKPTFPGKMVTAVLSIRNSFTHPVHVKGISLAEDVRFRFKDFNANGTTLAPGTLTKVGRIYFDP------ 599 (1626)
T ss_pred eeEechhhhccCCCCCcceeeeeeehhcccCcceeeeeeeeccCcceeeecccCCccccccccccccceEEecc------
Confidence 477889999997655 578899999999998888766333 333455555 57889999987777 444433
Q ss_pred CCCCCCeEEE
Q 026266 80 DMQCKDKFLL 89 (241)
Q Consensus 80 ~~~~kdKFlV 89 (241)
...|.|..-|
T Consensus 600 ~a~CgdhCYi 609 (1626)
T KOG3620|consen 600 AAVCGDHCYI 609 (1626)
T ss_pred cccccCeeEe
Confidence 2367665444
No 351
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.09 E-value=68 Score=26.59 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026266 180 ARALISKLKDEKNNAVQQN 198 (241)
Q Consensus 180 a~~~i~~L~eE~~~~~~q~ 198 (241)
+...+++|++|...|.+|.
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444
No 352
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=20.04 E-value=2.2e+02 Score=24.42 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=27.4
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|+++|+|..++.|- ++-... . + ...|.|.|+++..+.+
T Consensus 161 ~l~v~Nptpy~vtl~~l~~~~~-~--~-~~~~mv~P~s~~~~~l 200 (227)
T PRK15299 161 TLTVKNPTPYYMNFATLSVGSQ-K--V-KAPRYVAPFGNAQYTL 200 (227)
T ss_pred EEEEECCCccEEEEEeEEECCc-c--c-CCCceECCCCccEEEc
Confidence 599999999999874 333222 2 2 2358899999888864
Done!