Query 026266
Match_columns 241
No_of_seqs 212 out of 737
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 1.4E-38 4.8E-43 258.4 13.7 134 3-141 15-151 (152)
2 2cri_A Vesicle-associated memb 100.0 1.3E-36 4.6E-41 245.4 19.1 124 4-131 12-136 (147)
3 1z9l_A Vesicle-associated memb 100.0 4.7E-36 1.6E-40 236.9 17.2 122 1-126 4-127 (128)
4 1msp_A MSP, major sperm protei 100.0 1E-33 3.5E-38 223.0 16.5 118 5-126 7-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 2.5E-29 8.7E-34 193.0 14.5 104 7-124 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 2.4E-28 8.2E-33 188.9 15.5 106 5-124 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.4 9.2E-07 3.1E-11 68.0 8.2 75 11-91 29-104 (122)
8 2e6j_A Hydin protein; PAPD, st 98.2 4.8E-06 1.6E-10 62.5 8.1 71 4-74 7-81 (112)
9 3qbt_B Inositol polyphosphate 98.1 1.9E-05 6.3E-10 62.4 10.3 70 4-73 24-100 (140)
10 3qis_A Inositol polyphosphate 97.6 0.00025 8.4E-09 64.4 10.1 70 5-74 28-104 (366)
11 2qsv_A Uncharacterized protein 96.8 0.0055 1.9E-07 51.3 8.8 69 6-75 2-71 (220)
12 2qsv_A Uncharacterized protein 96.5 0.012 4.3E-07 49.1 9.2 67 5-74 118-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 93.6 1.4 4.7E-05 37.7 12.9 108 7-128 30-147 (257)
14 2co7_B SAFB chaperone, putativ 92.7 1.1 3.8E-05 37.4 10.8 83 7-93 14-101 (221)
15 2xg5_A PAPD, chaperone protein 92.5 1.9 6.4E-05 35.9 11.8 108 7-128 2-118 (218)
16 1klf_A FIMC chaperone, chapero 91.3 2.5 8.4E-05 34.8 11.2 83 7-93 2-91 (205)
17 4djm_A DRAB; chaperone, PILI; 90.9 2 6.7E-05 36.4 10.4 83 7-93 24-111 (239)
18 1l4i_A SFAE protein; periplasm 89.6 3.6 0.00012 33.8 10.8 110 7-128 2-118 (206)
19 1yew_A Particulate methane mon 89.4 2.6 8.9E-05 37.8 10.2 67 6-74 249-337 (382)
20 2r39_A FIXG-related protein; s 88.4 2.5 8.7E-05 31.4 8.3 51 24-74 33-84 (118)
21 4ay0_A Chaperone protein CAF1M 88.3 6.9 0.00024 32.5 11.7 84 7-96 14-104 (218)
22 2jee_A YIIU; FTSZ, septum, coi 86.9 1.5 5E-05 31.0 5.5 34 171-204 9-42 (81)
23 1nlw_A MAD protein, MAX dimeri 86.2 1.8 6E-05 30.4 5.8 36 176-211 41-76 (80)
24 3rfr_A PMOB; membrane, oxidore 85.8 3.1 0.00011 37.8 8.5 65 7-74 284-369 (419)
25 2jee_A YIIU; FTSZ, septum, coi 85.1 2.1 7.2E-05 30.2 5.6 39 169-207 28-66 (81)
26 1nkp_B MAX protein, MYC proto- 85.0 2.3 7.9E-05 29.7 6.0 36 177-212 42-77 (83)
27 3gfu_C Chaperone protein FAEE; 84.4 17 0.00057 30.3 13.7 83 7-93 2-91 (224)
28 1gd2_E Transcription factor PA 81.6 2.1 7E-05 29.4 4.3 32 177-208 31-62 (70)
29 2oqq_A Transcription factor HY 80.1 3.3 0.00011 25.3 4.4 32 172-203 7-38 (42)
30 1hjb_A Ccaat/enhancer binding 79.4 3.5 0.00012 29.4 5.1 40 173-212 34-73 (87)
31 2akf_A Coronin-1A; coiled coil 79.4 1.5 5.2E-05 24.7 2.5 27 185-211 2-28 (32)
32 1t2k_D Cyclic-AMP-dependent tr 78.6 5 0.00017 26.3 5.4 35 176-210 23-57 (61)
33 2w6a_A ARF GTPase-activating p 77.9 6.6 0.00023 25.9 5.6 38 169-206 14-51 (63)
34 1am9_A Srebp-1A, protein (ster 75.8 6.2 0.00021 27.5 5.6 32 176-207 44-75 (82)
35 1ci6_A Transcription factor AT 75.5 6.7 0.00023 26.0 5.4 35 176-210 24-58 (63)
36 1nkp_A C-MYC, MYC proto-oncoge 74.7 7.2 0.00025 27.6 5.8 33 177-209 47-79 (88)
37 1dh3_A Transcription factor CR 74.7 7.2 0.00025 25.2 5.2 29 183-211 23-51 (55)
38 3zy7_A AP-1 complex subunit ga 73.4 7.4 0.00025 29.2 5.9 83 22-108 29-121 (122)
39 1jnm_A Proto-oncogene C-JUN; B 72.8 3.9 0.00013 27.0 3.7 34 176-209 23-56 (62)
40 2wt7_A Proto-oncogene protein 72.8 8.5 0.00029 25.4 5.4 33 177-209 25-57 (63)
41 1hlo_A Protein (transcription 71.8 5 0.00017 27.8 4.2 28 177-204 52-79 (80)
42 3m9b_A Proteasome-associated A 71.7 3 0.0001 35.6 3.5 41 171-211 57-97 (251)
43 1gu4_A CAAT/enhancer binding p 71.7 8.1 0.00028 26.9 5.2 38 174-211 35-72 (78)
44 3m91_A Proteasome-associated A 69.5 12 0.00041 23.9 5.2 37 172-208 13-49 (51)
45 2wuj_A Septum site-determining 69.1 7.7 0.00026 25.2 4.4 32 178-209 23-54 (57)
46 2yy0_A C-MYC-binding protein; 69.0 11 0.00037 24.2 5.0 20 187-206 24-43 (53)
47 3hd7_A Vesicle-associated memb 68.7 25 0.00085 24.9 7.5 9 229-237 81-89 (91)
48 2w6a_A ARF GTPase-activating p 68.0 23 0.00078 23.3 7.0 37 174-210 26-62 (63)
49 2dgc_A Protein (GCN4); basic d 67.8 5.7 0.00019 26.5 3.6 29 183-211 31-59 (63)
50 1fmh_A General control protein 67.7 13 0.00046 20.7 4.5 27 184-210 3-29 (33)
51 2dgc_A Protein (GCN4); basic d 67.6 11 0.00039 24.9 5.1 32 175-206 30-61 (63)
52 3mq7_A Bone marrow stromal ant 67.5 21 0.00072 26.7 7.0 29 183-211 72-100 (121)
53 3m48_A General control protein 67.1 8.5 0.00029 22.3 3.7 26 186-211 4-29 (33)
54 3c3g_A Alpha/beta peptide with 67.0 14 0.00049 21.3 4.6 26 186-211 4-29 (33)
55 1gd2_E Transcription factor PA 66.6 8.6 0.0003 26.2 4.4 39 170-208 31-69 (70)
56 4dzn_A Coiled-coil peptide CC- 64.9 16 0.00055 20.4 4.8 26 184-209 4-29 (33)
57 1t2k_D Cyclic-AMP-dependent tr 64.3 12 0.00041 24.4 4.7 28 183-210 23-50 (61)
58 2oxj_A Hybrid alpha/beta pepti 63.9 19 0.00065 20.9 4.8 27 185-211 4-30 (34)
59 3c3f_A Alpha/beta peptide with 63.5 18 0.00062 20.9 4.6 27 185-211 4-30 (34)
60 1nkp_A C-MYC, MYC proto-oncoge 62.0 14 0.00049 26.1 5.0 33 177-209 54-86 (88)
61 1uo4_A General control protein 61.9 18 0.00062 21.0 4.5 27 185-211 4-30 (34)
62 1dh3_A Transcription factor CR 61.4 8.2 0.00028 24.9 3.4 31 175-205 22-52 (55)
63 1go4_E MAD1 (mitotic arrest de 59.9 16 0.00054 26.7 5.0 31 176-206 13-43 (100)
64 2wt7_A Proto-oncogene protein 58.8 21 0.00073 23.4 5.2 30 182-211 23-52 (63)
65 4fm3_A Uncharacterized hypothe 58.6 20 0.00068 26.1 5.3 36 170-205 59-94 (98)
66 3hn9_A Lamin-B1; structural ge 58.2 14 0.0005 27.7 4.8 41 26-67 25-71 (123)
67 1go4_E MAD1 (mitotic arrest de 57.9 21 0.00071 26.0 5.4 31 181-211 11-41 (100)
68 2l5g_A GPS2 protein, G protein 57.1 21 0.00071 21.2 4.2 22 177-198 10-31 (38)
69 4h22_A Leucine-rich repeat fli 56.2 29 0.001 25.4 5.9 20 171-190 33-52 (103)
70 1nkp_B MAX protein, MYC proto- 55.3 15 0.0005 25.4 4.1 32 177-208 49-80 (83)
71 2bni_A General control protein 55.2 28 0.00095 20.2 4.5 26 186-211 5-30 (34)
72 2xzz_A Protein-glutamine gamma 55.2 56 0.0019 23.5 7.6 55 20-75 18-75 (102)
73 3q0x_A Centriole protein; cent 55.0 20 0.0007 30.0 5.6 43 170-212 173-215 (228)
74 1nlw_A MAD protein, MAX dimeri 54.8 18 0.00062 25.1 4.5 30 178-207 50-79 (80)
75 3hd7_B Syntaxin-1A; membrane p 54.8 39 0.0013 24.6 6.6 12 225-236 95-106 (109)
76 2wt7_B Transcription factor MA 54.6 28 0.00096 24.8 5.5 33 179-211 52-84 (90)
77 2v66_B Nuclear distribution pr 54.3 28 0.00095 25.8 5.6 35 169-203 18-56 (111)
78 1jnm_A Proto-oncogene C-JUN; B 54.3 28 0.00096 22.7 5.2 30 182-211 22-51 (62)
79 3efg_A Protein SLYX homolog; x 53.1 33 0.0011 23.6 5.6 43 170-212 16-58 (78)
80 1kd8_A GABH AIV, GCN4 acid bas 53.1 31 0.0011 20.3 4.5 24 187-210 6-29 (36)
81 2huh_A Putative DNA mismatch r 53.0 37 0.0013 26.4 6.4 66 24-97 28-94 (147)
82 3idu_A Uncharacterized protein 52.0 45 0.0015 25.0 6.7 68 21-97 32-100 (127)
83 2wuj_A Septum site-determining 51.9 14 0.00048 23.9 3.3 33 172-204 24-56 (57)
84 4e61_A Protein BIM1; EB1-like 51.7 35 0.0012 25.1 5.8 12 180-191 30-41 (106)
85 4emc_A Monopolin complex subun 51.2 17 0.00056 29.6 4.2 7 229-235 77-83 (190)
86 1gyu_A Adapter-related protein 50.4 45 0.0015 25.5 6.6 68 22-93 47-120 (140)
87 1kd8_B GABH BLL, GCN4 acid bas 50.3 36 0.0012 19.9 4.6 24 187-210 6-29 (36)
88 1a93_B MAX protein, coiled coi 50.2 32 0.0011 20.0 4.2 22 184-205 9-30 (34)
89 2ks1_B Epidermal growth factor 49.8 12 0.00041 23.1 2.5 17 224-240 21-37 (44)
90 1deb_A APC protein, adenomatou 49.5 47 0.0016 21.0 5.7 26 176-201 4-29 (54)
91 3i00_A HIP-I, huntingtin-inter 49.2 33 0.0011 25.7 5.4 40 172-211 44-83 (120)
92 3s9g_A Protein hexim1; cyclin 49.2 31 0.001 25.1 4.9 28 183-210 66-93 (104)
93 1iu1_A Gamma1-adaptin; coated 48.8 58 0.002 25.0 7.0 68 23-94 54-127 (146)
94 1dip_A Delta-sleep-inducing pe 48.7 29 0.001 23.8 4.5 27 177-203 17-43 (78)
95 3w03_C DNA repair protein XRCC 48.6 29 0.00099 28.1 5.4 29 179-207 149-177 (184)
96 1ci6_A Transcription factor AT 47.9 41 0.0014 22.1 5.2 26 184-209 25-50 (63)
97 3m91_A Proteasome-associated A 47.6 51 0.0018 20.9 5.4 36 176-211 10-45 (51)
98 3hnw_A Uncharacterized protein 47.5 53 0.0018 25.1 6.5 25 173-197 73-97 (138)
99 2wg5_A General control protein 47.3 21 0.0007 26.2 4.0 27 185-211 10-36 (109)
100 3jt0_A Lamin-B1; structural ge 47.0 27 0.00092 27.0 4.8 42 26-67 38-84 (144)
101 2yy0_A C-MYC-binding protein; 46.7 37 0.0013 21.6 4.6 23 170-192 21-43 (53)
102 1dip_A Delta-sleep-inducing pe 45.9 17 0.0006 24.9 3.0 25 170-194 17-41 (78)
103 3isy_A Bsupi, intracellular pr 45.1 51 0.0017 24.6 5.9 38 1-44 2-40 (120)
104 3u1c_A Tropomyosin alpha-1 cha 44.8 47 0.0016 23.9 5.6 39 170-208 25-63 (101)
105 2l2t_A Receptor tyrosine-prote 44.6 16 0.00056 22.5 2.5 17 224-240 20-36 (44)
106 1ic2_A Tropomyosin alpha chain 44.4 53 0.0018 22.5 5.6 38 171-208 23-60 (81)
107 2w6b_A RHO guanine nucleotide 43.3 63 0.0021 20.8 5.2 22 182-203 10-31 (56)
108 3s9g_A Protein hexim1; cyclin 42.8 33 0.0011 24.9 4.3 21 176-196 38-58 (104)
109 3e38_A Two-domain protein cont 42.5 35 0.0012 30.1 5.4 65 26-97 270-334 (343)
110 2zvf_A Alanyl-tRNA synthetase; 42.3 32 0.0011 26.6 4.7 37 172-208 22-58 (171)
111 1uii_A Geminin; human, DNA rep 42.3 63 0.0022 22.6 5.6 29 179-207 43-71 (83)
112 2wt7_B Transcription factor MA 42.0 33 0.0011 24.5 4.2 26 183-208 49-74 (90)
113 2xdj_A Uncharacterized protein 41.9 67 0.0023 22.4 5.8 28 179-206 24-51 (83)
114 2hy6_A General control protein 41.6 50 0.0017 19.1 4.5 25 186-210 5-29 (34)
115 2z5i_A TM, general control pro 41.1 63 0.0022 20.4 5.1 32 176-207 13-44 (52)
116 2wq1_A General control protein 40.9 51 0.0017 18.9 4.6 24 187-210 5-28 (33)
117 2eqb_B RAB guanine nucleotide 40.7 55 0.0019 23.6 5.2 13 196-208 47-59 (97)
118 1gu4_A CAAT/enhancer binding p 40.3 73 0.0025 21.9 5.7 30 182-211 36-65 (78)
119 1hjb_A Ccaat/enhancer binding 40.1 71 0.0024 22.5 5.7 28 184-211 38-65 (87)
120 4etp_A Kinesin-like protein KA 39.1 44 0.0015 30.1 5.6 10 199-208 48-57 (403)
121 1jcd_A Major outer membrane li 39.0 74 0.0025 20.2 5.6 34 172-205 8-41 (52)
122 3w03_C DNA repair protein XRCC 38.6 44 0.0015 27.0 4.9 32 175-206 152-183 (184)
123 1lwu_C Fibrinogen gamma chain; 38.5 58 0.002 28.6 6.1 45 167-211 11-55 (323)
124 2kes_A Synphilin-1; synphillin 37.9 69 0.0024 19.6 5.0 27 182-208 11-37 (48)
125 1wt6_A Myotonin-protein kinase 37.5 80 0.0027 22.0 5.4 33 177-209 33-65 (81)
126 3hd7_A Vesicle-associated memb 37.3 1.1E+02 0.0036 21.5 6.4 8 227-234 74-81 (91)
127 2l5g_B Putative uncharacterize 37.1 70 0.0024 19.4 5.2 32 179-210 6-37 (42)
128 2aze_B Transcription factor E2 36.5 77 0.0026 23.1 5.6 34 175-208 6-39 (106)
129 3tnu_B Keratin, type II cytosk 36.3 65 0.0022 24.0 5.4 27 176-202 37-63 (129)
130 3vta_A Cucumisin; subtilisin-l 35.7 1.5E+02 0.005 28.0 9.0 51 23-73 538-591 (621)
131 1fzc_C Fibrin; blood coagulati 35.2 44 0.0015 29.3 4.8 43 169-211 5-47 (319)
132 3nmd_A CGMP dependent protein 35.1 61 0.0021 22.1 4.5 29 181-209 39-67 (72)
133 3sjb_C Golgi to ER traffic pro 35.1 18 0.0006 26.1 1.8 14 177-190 51-64 (93)
134 3s4r_A Vimentin; alpha-helix, 34.7 95 0.0033 21.9 5.8 33 177-209 58-90 (93)
135 3trt_A Vimentin; cytoskeleton, 34.3 89 0.003 20.8 5.4 22 187-208 54-75 (77)
136 3u59_A Tropomyosin beta chain; 34.2 87 0.003 22.3 5.6 36 171-206 26-61 (101)
137 3mq7_A Bone marrow stromal ant 34.2 77 0.0026 23.6 5.2 33 176-208 72-104 (121)
138 2r2v_A GCN4 leucine zipper; co 33.5 71 0.0024 18.5 4.6 20 191-210 10-29 (34)
139 2eqb_B RAB guanine nucleotide 33.1 1.1E+02 0.0038 22.0 5.9 27 177-203 7-33 (97)
140 3ndz_E Endoglucanase D; cellot 33.0 90 0.0031 22.6 5.5 49 24-72 17-86 (107)
141 2oqq_A Transcription factor HY 32.5 85 0.0029 19.0 5.7 25 172-196 14-38 (42)
142 3q8t_A Beclin-1; autophagy, AT 32.0 1.1E+02 0.0036 21.8 5.6 28 178-205 21-48 (96)
143 3sja_C Golgi to ER traffic pro 31.7 99 0.0034 20.6 5.0 16 194-209 37-52 (65)
144 2v71_A Nuclear distribution pr 31.6 86 0.003 25.3 5.6 19 184-202 90-108 (189)
145 1wm3_A Ubiquitin-like protein 31.3 42 0.0014 22.2 3.2 21 27-47 3-23 (72)
146 1ifr_A Lamin A/C; immunoglobul 31.3 1E+02 0.0035 22.9 5.7 45 26-72 19-69 (121)
147 3tnu_A Keratin, type I cytoske 31.2 73 0.0025 23.8 4.9 24 178-201 41-64 (131)
148 1l8d_A DNA double-strand break 31.0 88 0.003 22.3 5.2 39 172-210 7-45 (112)
149 3iv1_A Tumor susceptibility ge 30.9 1.2E+02 0.0041 20.9 5.5 37 172-208 36-72 (78)
150 2fxo_A Myosin heavy chain, car 30.8 94 0.0032 23.2 5.5 38 173-210 81-118 (129)
151 1fxk_C Protein (prefoldin); ar 30.8 90 0.0031 23.0 5.4 38 172-209 92-129 (133)
152 4etp_A Kinesin-like protein KA 30.7 69 0.0024 28.8 5.5 32 172-203 7-38 (403)
153 3cvf_A Homer-3, homer protein 30.6 1.2E+02 0.0041 20.9 5.5 31 175-205 20-50 (79)
154 2k1k_A Ephrin type-A receptor 30.5 43 0.0015 19.8 2.8 20 221-240 18-37 (38)
155 4emc_A Monopolin complex subun 30.3 1E+02 0.0035 24.9 5.8 23 176-198 35-57 (190)
156 3m9b_A Proteasome-associated A 29.8 48 0.0017 28.1 4.0 36 176-211 55-90 (251)
157 1klf_A FIMC chaperone, chapero 29.3 1E+02 0.0034 24.9 5.8 39 27-69 139-177 (205)
158 1p4u_A ADP-ribosylation factor 28.8 1.2E+02 0.004 23.4 5.9 64 26-93 57-130 (153)
159 1t6f_A Geminin; coiled-coil, c 28.6 92 0.0032 18.2 4.0 19 183-201 15-33 (37)
160 3mtu_E Head morphogenesis prot 28.3 1.1E+02 0.0039 21.0 5.0 35 172-206 34-68 (77)
161 3mud_A DNA repair protein XRCC 28.0 97 0.0033 24.8 5.2 31 176-206 136-166 (175)
162 3vlc_E Golgi to ER traffic pro 28.0 32 0.0011 24.7 2.2 37 176-212 31-79 (94)
163 3v86_A De novo design helix; c 27.7 75 0.0026 16.9 3.6 18 187-204 5-22 (27)
164 2iaa_C Azurin; quinoprotein, t 27.6 88 0.003 23.3 4.8 63 6-71 11-98 (128)
165 4ath_A MITF, microphthalmia-as 27.2 78 0.0027 22.2 4.0 25 177-201 34-58 (83)
166 3vmx_A Voltage-gated hydrogen 27.2 1.2E+02 0.0039 19.0 4.4 29 173-201 9-37 (48)
167 3rmi_A Chorismate mutase prote 27.0 1.4E+02 0.0046 21.8 5.7 33 170-202 14-46 (114)
168 3efg_A Protein SLYX homolog; x 26.9 1.5E+02 0.0052 20.2 5.5 29 177-205 30-58 (78)
169 2e9g_A AP-1 complex subunit ga 26.9 41 0.0014 25.3 2.8 43 22-64 38-84 (131)
170 3cve_A Homer protein homolog 1 26.8 1.5E+02 0.0051 20.1 5.5 29 176-204 15-43 (72)
171 1c7s_A Beta-N-acetylhexosamini 26.7 1.2E+02 0.0041 30.2 6.8 50 23-72 39-110 (858)
172 2zqm_A Prefoldin beta subunit 26.6 1.2E+02 0.004 21.7 5.2 36 172-207 74-109 (117)
173 3ra3_A P1C; coiled coil domain 26.5 43 0.0015 18.0 2.0 13 193-205 11-23 (28)
174 2io0_B Small ubiquitin-related 26.3 59 0.002 22.8 3.4 23 25-47 5-27 (91)
175 3ra3_B P2F; coiled coil domain 26.2 80 0.0027 16.9 3.0 12 196-207 7-18 (28)
176 4ay0_A Chaperone protein CAF1M 26.2 71 0.0024 26.2 4.4 47 14-69 141-187 (218)
177 1l8d_A DNA double-strand break 26.2 1.4E+02 0.0046 21.2 5.5 36 176-211 4-39 (112)
178 3ghg_A Fibrinogen alpha chain; 25.7 65 0.0022 30.2 4.3 28 179-206 114-141 (562)
179 2zdi_C Prefoldin subunit alpha 25.5 1.4E+02 0.0049 22.5 5.8 41 172-212 102-142 (151)
180 2ccw_A Azurin II, AZN-2; elect 24.8 96 0.0033 23.1 4.5 64 6-72 12-100 (129)
181 1v54_M VIIIB, IX, cytochrome C 24.4 68 0.0023 19.9 2.9 18 222-239 16-35 (46)
182 3kin_B Kinesin heavy chain; mo 24.1 1.3E+02 0.0046 22.0 5.2 30 179-208 86-115 (117)
183 2lv4_A Putative outer membrane 24.0 82 0.0028 24.0 3.9 37 42-78 43-79 (146)
184 3mnm_A ADP-ribosylation factor 24.0 2.2E+02 0.0074 20.9 8.0 57 15-71 24-86 (123)
185 2aze_A Transcription factor DP 24.0 1.3E+02 0.0044 23.5 5.2 32 171-202 8-39 (155)
186 4ani_A Protein GRPE; chaperone 23.9 1.4E+02 0.0047 24.5 5.7 12 177-188 68-79 (213)
187 3i6s_A Subtilisin-like proteas 23.7 3E+02 0.01 26.1 8.9 51 24-74 560-613 (649)
188 2ls4_A High affinity copper up 29.5 17 0.00057 19.9 0.0 16 224-239 5-20 (26)
189 2lll_A Lamin-B2; immunoglobuli 23.6 1.3E+02 0.0046 22.9 5.2 45 26-72 34-84 (139)
190 3u06_A Protein claret segregat 23.5 1.1E+02 0.0038 27.5 5.5 46 166-211 1-49 (412)
191 3vkg_A Dynein heavy chain, cyt 23.5 1.3E+02 0.0045 34.5 7.0 38 172-209 2032-2069(3245)
192 1ik9_A DNA repair protein XRCC 23.2 84 0.0029 25.8 4.2 33 14-46 6-38 (213)
193 1yyc_A LEA protein, putative l 23.0 2.8E+02 0.0095 21.8 7.3 51 22-72 62-118 (174)
194 2xdj_A Uncharacterized protein 23.0 1.2E+02 0.0042 21.0 4.4 33 171-203 23-55 (83)
195 3viq_B Mating-type switching p 22.9 89 0.003 22.0 3.7 17 172-188 12-28 (85)
196 3q4f_C DNA repair protein XRCC 22.6 98 0.0034 24.9 4.3 25 180-204 159-183 (186)
197 4gio_A Putative lipoprotein; u 22.6 1.6E+02 0.0054 21.3 5.2 34 21-54 35-68 (107)
198 1wlq_A Geminin; coiled-coil; 2 22.5 1.7E+02 0.0059 20.4 5.1 22 181-202 44-65 (83)
199 1a93_A Coiled coil, LZ, MYC pr 22.3 1.2E+02 0.0042 17.5 4.2 21 186-206 11-31 (34)
200 1uii_A Geminin; human, DNA rep 22.2 2E+02 0.007 20.0 5.6 25 179-203 50-74 (83)
201 1fxk_A Prefoldin; archaeal pro 22.0 1.3E+02 0.0045 21.0 4.7 31 173-203 70-100 (107)
202 1xo8_A AT1G01470; structural g 21.9 1.8E+02 0.006 22.2 5.7 50 23-72 40-95 (151)
203 3rrk_A V-type ATPase 116 kDa s 21.9 1.3E+02 0.0043 26.0 5.4 30 175-204 99-128 (357)
204 1s1c_X RHO-associated, coiled- 21.7 1.9E+02 0.0066 19.5 5.3 19 171-189 16-34 (71)
205 2io1_B Small ubiquitin-related 21.6 82 0.0028 22.1 3.4 23 25-47 7-29 (94)
206 1jcd_A Major outer membrane li 21.5 1.6E+02 0.0056 18.6 5.5 29 176-204 5-33 (52)
207 3a7o_A Autophagy protein 16; c 21.5 1.4E+02 0.0047 20.3 4.2 15 177-191 27-41 (75)
208 1bxv_A Plastocyanin; copper pr 21.3 1.4E+02 0.0046 19.8 4.5 54 6-69 13-66 (91)
209 1fgj_A Hydroxylamine oxidoredu 21.2 78 0.0027 29.7 4.1 17 224-240 524-540 (546)
210 1ytz_T Troponin T; muscle, THI 21.0 1.7E+02 0.0059 21.3 5.1 41 171-211 45-85 (107)
211 2jwa_A Receptor tyrosine-prote 21.0 56 0.0019 20.1 2.0 17 224-240 21-37 (44)
212 1wlq_A Geminin; coiled-coil; 2 21.0 1.2E+02 0.0041 21.2 4.0 33 177-209 33-65 (83)
213 2d07_B Ubiquitin-like protein 20.9 86 0.0029 21.8 3.4 24 24-47 16-39 (93)
214 4ati_A MITF, microphthalmia-as 20.7 88 0.003 23.1 3.5 21 177-197 69-89 (118)
215 3o0l_A Uncharacterized protein 20.7 2E+02 0.007 20.8 5.5 36 20-55 36-73 (112)
216 1j1d_B Troponin T, TNT; THIN f 20.7 2E+02 0.0068 20.9 5.3 43 170-212 44-86 (106)
217 2jp3_A FXYD domain-containing 20.6 65 0.0022 21.6 2.4 15 221-235 22-36 (67)
218 3s4r_A Vimentin; alpha-helix, 20.5 2.3E+02 0.0078 19.9 5.9 18 192-209 26-43 (93)
219 2fxo_A Myosin heavy chain, car 20.2 2E+02 0.0068 21.3 5.5 35 172-206 87-121 (129)
220 4b4t_J 26S protease regulatory 20.2 89 0.003 28.2 4.1 39 172-210 29-67 (405)
221 2jxx_A Nfatc2-interacting prot 20.2 1.2E+02 0.0042 21.5 4.1 27 21-47 21-48 (97)
222 1vf5_F Protein PET M; photosyn 20.2 77 0.0026 18.5 2.4 18 223-240 11-28 (35)
223 2jo1_A Phospholemman; FXYD1, N 20.1 67 0.0023 21.8 2.4 14 221-234 21-34 (72)
224 1gk6_A Vimentin; intermediate 20.1 1.3E+02 0.0043 19.3 3.8 28 174-201 6-33 (59)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=1.4e-38 Score=258.36 Aligned_cols=134 Identities=31% Similarity=0.478 Sum_probs=122.5
Q ss_pred CCcceEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCC
Q 026266 3 TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (241)
Q Consensus 3 ~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~ 81 (241)
.+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++||||||.|+|+||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 9999999999999999999999999999999999999999999999999999999999999753 2
Q ss_pred CCCCeEEEEEEecC--CCCCcccchhhhhccccCceeeEEEeEEEEeCCCCCCCCCCCCCCC
Q 026266 82 QCKDKFLLQSVKTN--DGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEE 141 (241)
Q Consensus 82 ~~kdKFlVqs~~~~--~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~~~s~~~e~~e~ 141 (241)
+|+|||+||++.++ ++.+..|+. ++|++..+..++++||||+|+.+++|++++..|.++
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~ 151 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSS 151 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCC
Confidence 78999999999999 566677885 899998888999999999999999998888777554
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=245.45 Aligned_cols=124 Identities=31% Similarity=0.598 Sum_probs=113.0
Q ss_pred CcceEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCC
Q 026266 4 GELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQ 82 (241)
Q Consensus 4 ~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~ 82 (241)
+++|.|+|. +|.|.+|+++.+++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++.. +++++
T Consensus 12 ~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~-~p~~~ 90 (147)
T 2cri_A 12 EQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDY-DPNEK 90 (147)
T ss_dssp CCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCC-CTTCC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcC-Ccccc
Confidence 579999996 9999999999999999999999999999999999999999999999999999999999999854 45568
Q ss_pred CCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCCCCC
Q 026266 83 CKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQP 131 (241)
Q Consensus 83 ~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~~ 131 (241)
|+|||+||++.++++.+ |+ .++|++..+..++++||||+|+.|++.
T Consensus 91 ~kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 91 SKHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp SCCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred CCCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 99999999999998643 55 589998888889999999999987653
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=4.7e-36 Score=236.88 Aligned_cols=122 Identities=31% Similarity=0.599 Sum_probs=110.8
Q ss_pred CC-CCcceEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCC
Q 026266 1 MS-TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP 78 (241)
Q Consensus 1 m~-~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p 78 (241)
|+ .+++|.|+|. +|.|.+|+++.+++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|+||++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 44 4579999996 9999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEe
Q 026266 79 PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (241)
Q Consensus 79 ~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (241)
++.+|+|||+||++.++++. .|+ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 45689999999999999865 355 5899988888999999999996
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=1e-33 Score=222.98 Aligned_cols=118 Identities=20% Similarity=0.371 Sum_probs=106.8
Q ss_pred cceEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCC
Q 026266 5 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQC 83 (241)
Q Consensus 5 ~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~ 83 (241)
..|.|+|. +|.|++|+++.+++.|+|+|+|+++||||||||+|++|||||++|+|+||+++.|.|+||++++.|++ ..
T Consensus 7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~-~~ 85 (126)
T 1msp_A 7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED-LN 85 (126)
T ss_dssp CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-CS
T ss_pred CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-cC
Confidence 67999997 99999999999999999999999999999999999999999999999999999999999999876655 45
Q ss_pred CCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEe
Q 026266 84 KDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV 126 (241)
Q Consensus 84 kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~ 126 (241)
+|||+|||+.++++.+ +|+..+||... ..+..++|+|.|.
T Consensus 86 kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 86 NDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp SCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 9999999999998864 67877777543 3589999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=2.5e-29 Score=192.97 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=89.6
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCCCe
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDK 86 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~kdK 86 (241)
|.|+|.+|.|.++. ..+.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|+. + .|+||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 69999999999873 479999999999999999999999999999999999999999999999984 1 47999
Q ss_pred EEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEE
Q 026266 87 FLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI 124 (241)
Q Consensus 87 FlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~ 124 (241)
|+||++.++++. .|. .++|++..+ ..+.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 344 689988655 345566554
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=2.4e-28 Score=188.95 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=92.1
Q ss_pred cceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCC
Q 026266 5 ELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCK 84 (241)
Q Consensus 5 ~ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~k 84 (241)
.++.++|.+|.|++. ..++.|+|+|+|+.+||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 578999999999976 3589999999999999999999999999999999999999999999999986 2 479
Q ss_pred CeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEE
Q 026266 85 DKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI 124 (241)
Q Consensus 85 dKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~ 124 (241)
|||+||++.++++. .|. .++|++..+ ..+.+|++.
T Consensus 80 DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 99999999998754 244 589988655 567777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=9.2e-07 Score=68.00 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=61.1
Q ss_pred CCeeeEec-cCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCCCeEEE
Q 026266 11 PLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLL 89 (241)
Q Consensus 11 P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~kdKFlV 89 (241)
|+.|.|.. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|... ......+.|
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~----g~~~~~l~v 102 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSV----GDHSGRLIV 102 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSS----BCCCCBCEE
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCC----ccEEEEEEE
Confidence 66788855 457788999999999999999999974 47999999999999999999999998631 134555555
Q ss_pred EE
Q 026266 90 QS 91 (241)
Q Consensus 90 qs 91 (241)
..
T Consensus 103 ~~ 104 (122)
T 2ys4_A 103 CY 104 (122)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=4.8e-06 Score=62.46 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=60.4
Q ss_pred CcceEEeCCeeeEec-cCCCeeeEEEEEEcCCCCeEEEEeeecCC---CceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNP---KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 4 ~~ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p---~~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
+..+.+++..|.|-. ..+....+.++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 467889998899844 56778899999999999999999964221 469999999999999999999999884
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=98.13 E-value=1.9e-05 Score=62.40 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=60.1
Q ss_pred CcceEEeCCeeeEec-cCCCeeeEEEEEEcCCCCeEEEEeeec------CCCceEEeCCCeeeCCCCeEEEEEEecc
Q 026266 4 GELLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGIVLPRSTCDIIVTMQA 73 (241)
Q Consensus 4 ~~ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT------~p~~Y~VrP~~G~i~P~~s~~V~V~lq~ 73 (241)
.+-+.+++.+|.|-. .++...++.|+|+|++.-+.-|++.-. .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 24 ~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 24 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp SCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 356888999999964 577888999999999999999998853 3446889999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.63 E-value=0.00025 Score=64.35 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=59.5
Q ss_pred cceEEeCCeeeEe-ccCCCeeeEEEEEEcCCCCeEEEEeeecCC------CceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 5 ELLSIEPLELKFP-FELKKQISCSLQLSNKTDNYVAFKVKTTNP------KKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 5 ~ll~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p------~~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
+.+.|++.+|.|. -.+....++.|+|+|++.-+..|++..... .-+.|.|..|.|.||+++.|.|++.-.
T Consensus 28 P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 28 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 6688999999995 367889999999999999999999986422 226699999999999999999998654
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.76 E-value=0.0055 Score=51.33 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=59.1
Q ss_pred ceEEeCCeeeEec-cCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccc
Q 026266 6 LLSIEPLELKFPF-ELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (241)
Q Consensus 6 ll~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~ 75 (241)
-|+++|..+.|.- +-+......++++|.++.++-++.-.. |..+..++..+.|.||++.+|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 3889999999965 345667789999999999999997644 88888899999999999999999998743
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.50 E-value=0.012 Score=49.14 Aligned_cols=67 Identities=12% Similarity=0.243 Sum_probs=57.2
Q ss_pred cceEEeCCeeeEe-ccCCCeeeEEEEEEcCCCCeEEE-EeeecCCCceEEeCCCeeeCCCCeEEEEEEeccc
Q 026266 5 ELLSIEPLELKFP-FELKKQISCSLQLSNKTDNYVAF-KVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 5 ~ll~i~P~eL~F~-~~~~~~~~~~l~L~N~s~~~vaF-KVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~ 74 (241)
..+.++ ..+.|- .+ +....+.++|+|.++.++.+ +|+|+. +...+.++.+.|.||++..|.|++.+.
T Consensus 118 ~~i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCEECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CEEEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 346777 778884 35 77788999999999999988 788765 789999999999999999999999875
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=93.59 E-value=1.4 Score=37.73 Aligned_cols=108 Identities=14% Similarity=0.194 Sum_probs=67.3
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecC------C----CceEEeCCCeeeCCCCeEEEEEEeccccc
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGIVLPRSTCDIIVTMQAQKE 76 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p----~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~ 76 (241)
|.|.|..+.|+.. .-...|+|+|.++.++.-.+-... | .-|.|-|+.-.|+||+...|.|...+. .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5677778888854 235899999999887765544322 1 249999999999999999999988764 3
Q ss_pred CCCCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 77 APPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 77 ~p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
.|.|...--.|.|.. +|+.... + ...=.-....+|++-|.+.
T Consensus 106 LP~DrESlf~lnv~e--IPp~~~~-~-------~n~Lqiair~rIKLFyRP~ 147 (257)
T 3q48_A 106 LPTDRESLFWLNILE--VPPRDED-E-------NNALQFSFRSRFKLFFRPS 147 (257)
T ss_dssp CCSSSCEEEEEEEEE--ECCC-----------------CCEEEEEEEEEECT
T ss_pred CCCCceeEEEEEeee--cCCCCCC-C-------CceEEEEEEEEEEEEEecc
Confidence 566643333333444 4432110 0 0001224567888888754
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=92.70 E-value=1.1 Score=37.36 Aligned_cols=83 Identities=11% Similarity=0.177 Sum_probs=59.1
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecC-----CCceEEeCCCeeeCCCCeEEEEEEecccccCCCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN-----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-----p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~ 81 (241)
|.|.+..+.|+... -...|+|+|.++.++.-.+.... ..-|.|-|+.-.|+||+...|.|...+. ..|.|.
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 67788889998643 36799999999887765543321 1259999999999999999999998763 466654
Q ss_pred CCCCeEEEEEEe
Q 026266 82 QCKDKFLLQSVK 93 (241)
Q Consensus 82 ~~kdKFlVqs~~ 93 (241)
..--.|.|..++
T Consensus 90 Eslf~lnv~eIP 101 (221)
T 2co7_B 90 ETLQWVCIKAVP 101 (221)
T ss_dssp CEEEEEEEEEEC
T ss_pred eEEEEEEeecCC
Confidence 333344444444
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=92.46 E-value=1.9 Score=35.91 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=70.9
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCC-eEEEEeeecC-------CCceEEeCCCeeeCCCCeEEEEEEeccc-ccC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKVKTTN-------PKKYCVRPNTGIVLPRSTCDIIVTMQAQ-KEA 77 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~-------p~~Y~VrP~~G~i~P~~s~~V~V~lq~~-~~~ 77 (241)
|.|++..+.|+... -...|+|+|.++. ++.-.+-... ..-|.|-|+.-.|+||+...|.|...+. ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56778889998643 4689999999987 7665543322 2349999999999999999999998762 246
Q ss_pred CCCCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 78 PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 78 p~~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
|.|...--.|-|..++...+ + . ..=.-....+|++-|.+.
T Consensus 79 P~DrESlf~lnv~eIPp~~~----~--~-----n~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 79 PQDRESLFYFNLREIPPRSE----K--A-----NVLQIALQTKIKLFYRPA 118 (218)
T ss_dssp CSSSCEEEEEEEEEECCCCC----C--T-----TEEEEEEEEEEEEEEECG
T ss_pred CCCceEEEEEEeecCCCCCC----C--C-----ceEEEEehheeeEEEcCc
Confidence 76644333444444442211 0 0 000124577888888754
No 16
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=91.34 E-value=2.5 Score=34.81 Aligned_cols=83 Identities=10% Similarity=0.151 Sum_probs=58.5
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCC-eEEEEeeec-----CCCceEEeCCCeeeCCCCeEEEEEEe-cccccCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFKVKTT-----NPKKYCVRPNTGIVLPRSTCDIIVTM-QAQKEAPP 79 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT-----~p~~Y~VrP~~G~i~P~~s~~V~V~l-q~~~~~p~ 79 (241)
|.|++..+.|+... ....|+|+|.++. ++.-.+-.. ...-|.|-|+.-.|+||+...|.|.. .+. ..|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 56778889998643 4689999999887 765554322 12359999999999999999999998 652 4666
Q ss_pred CCCCCCeEEEEEEe
Q 026266 80 DMQCKDKFLLQSVK 93 (241)
Q Consensus 80 ~~~~kdKFlVqs~~ 93 (241)
|...--.|-|..++
T Consensus 78 DrEslf~lnv~eIP 91 (205)
T 1klf_A 78 DRESLFWMNVKAIP 91 (205)
T ss_dssp SSCEEEEEEEEEEC
T ss_pred CceEEEEEEeEecC
Confidence 54333344444444
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=90.88 E-value=2 Score=36.39 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=57.2
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec-----CCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-----NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM 81 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT-----~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~ 81 (241)
|.|.+..+.|+... -...|+|+|.++.++.-.+-.. ...-|.|-|+.-.|+||+...|.|..... ..|.|.
T Consensus 24 v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 56788888988642 3589999999888755443321 12249999999999999999999988754 356653
Q ss_pred CCCCeEEEEEEe
Q 026266 82 QCKDKFLLQSVK 93 (241)
Q Consensus 82 ~~kdKFlVqs~~ 93 (241)
..--.|-|..++
T Consensus 100 ESlf~lnv~eIP 111 (239)
T 4djm_A 100 ESLQWICVKGIP 111 (239)
T ss_dssp CEEEEEEEEEEC
T ss_pred eEEEEEEEEecC
Confidence 333334444443
No 18
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=89.64 E-value=3.6 Score=33.81 Aligned_cols=110 Identities=8% Similarity=0.147 Sum_probs=70.2
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCC-CeEEEEeeec-----CCCceEEeCCCeeeCCCCeEEEEEE-ecccccCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTD-NYVAFKVKTT-----NPKKYCVRPNTGIVLPRSTCDIIVT-MQAQKEAPP 79 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT-----~p~~Y~VrP~~G~i~P~~s~~V~V~-lq~~~~~p~ 79 (241)
|.|++..+.|+... ....|+|+|.++ .++.-.+-.. ...-|.|-|+.-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 56777888998643 468999999986 7766554332 1235999999999999999999998 754 24666
Q ss_pred CCCCCCeEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeCC
Q 026266 80 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSP 128 (241)
Q Consensus 80 ~~~~kdKFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~ 128 (241)
|...--.|-|..++..++.. ++ . ..=.-....+|++-|.+.
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~--~-----n~lqia~r~riKlFyRP~ 118 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG--E-----NYLQFAIVSRIKLLYRPQ 118 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEECT
T ss_pred CceEEEEEEeecCCCCcccc-cC--C-----ceEEEEhhheeeEEEecc
Confidence 64444455555555322110 00 0 001224577888888854
No 19
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=89.42 E-value=2.6 Score=37.84 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=49.3
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceE----------------------EeCCCeeeCCCC
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYC----------------------VRPNTGIVLPRS 63 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~----------------------VrP~~G~i~P~~ 63 (241)
.+.++...-.|.-| ++...-+++++|+++.+|-..==+|+.-+|. |.|+. -|.||+
T Consensus 249 ~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~-pI~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNS-PLAPGE 326 (382)
T ss_dssp SEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCS-CBCTTC
T ss_pred ceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCC-CcCCCc
Confidence 34444445566654 7899999999999999998886666665553 33333 389999
Q ss_pred eEEEEEEeccc
Q 026266 64 TCDIIVTMQAQ 74 (241)
Q Consensus 64 s~~V~V~lq~~ 74 (241)
+.+|.|+.|.-
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999999863
No 20
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=88.43 E-value=2.5 Score=31.36 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=39.7
Q ss_pred eeEEEEEEcCCCCeEEEEeeecCCCceEE-eCCCeeeCCCCeEEEEEEeccc
Q 026266 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTGIVLPRSTCDIIVTMQAQ 74 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-rP~~G~i~P~~s~~V~V~lq~~ 74 (241)
-.+.|+|.|.+.++..|.++-.....+.+ .|..=.|+||+..++.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 47999999999999999999877544654 3554578899988887777543
No 21
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=88.29 E-value=6.9 Score=32.46 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=57.4
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeec-------CCCceEEeCCCeeeCCCCeEEEEEEecccccCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT-------~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~ 79 (241)
|.|.-..+.|+.. .-...|+|+|.++.++.-..... ...-|.|-|+.-.|+||+...|.|...+. ..|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 5566677888753 23688999999988865553321 11249999999999999999999998764 3566
Q ss_pred CCCCCCeEEEEEEecCC
Q 026266 80 DMQCKDKFLLQSVKTND 96 (241)
Q Consensus 80 ~~~~kdKFlVqs~~~~~ 96 (241)
|... -|-+.--.+|+
T Consensus 90 DRES--lf~lnv~eIPp 104 (218)
T 4ay0_A 90 DKES--LKWLCVKGIPP 104 (218)
T ss_dssp SSCE--EEEEEEEEECC
T ss_pred CcEE--EEEEEEEecCC
Confidence 5332 24444444443
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.86 E-value=1.5 Score=31.03 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=20.6
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+.|.+|...|...|.-|+-|...+.++|..|.++
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677776666666666666666555443
No 23
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=86.16 E-value=1.8 Score=30.41 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
-+.+|..+|..|+++...+.++...|+.|...|+++
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366888899999999988888988888877777654
No 24
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=85.84 E-value=3.1 Score=37.76 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=48.8
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceE--------------------E-eCCCeeeCCCCeE
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYC--------------------V-RPNTGIVLPRSTC 65 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~--------------------V-rP~~G~i~P~~s~ 65 (241)
+.++...-.|.-| ++...-+++++|+++.+|-+.==+|+.-+|. + .|+ -|.||++.
T Consensus 284 V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGETr 360 (419)
T 3rfr_A 284 VTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGESK 360 (419)
T ss_dssp CEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCEE
T ss_pred eEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcce
Confidence 4444445667754 7899999999999999998885566655554 1 233 59999999
Q ss_pred EEEEEeccc
Q 026266 66 DIIVTMQAQ 74 (241)
Q Consensus 66 ~V~V~lq~~ 74 (241)
+|.|..|.-
T Consensus 361 t~~V~a~da 369 (419)
T 3rfr_A 361 EIVVKIQDA 369 (419)
T ss_dssp EEEEEEECH
T ss_pred EEEEEeehH
Confidence 999999863
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.09 E-value=2.1 Score=30.21 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=30.9
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 169 ~~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
++++||.+...+.++...++.++..+.++|++|++|...
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888889999999887653
No 26
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.03 E-value=2.3 Score=29.72 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
+.+|..+|..|+++...+..+...|+++...|+.+.
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999888888888888888777776654
No 27
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=84.45 E-value=17 Score=30.32 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=54.0
Q ss_pred eEEeCCeeeEeccCCCeeeEEEEEEcCCCC-eEEEE--eeecC----CCceEEeCCCeeeCCCCeEEEEEEecccccCCC
Q 026266 7 LSIEPLELKFPFELKKQISCSLQLSNKTDN-YVAFK--VKTTN----PKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPP 79 (241)
Q Consensus 7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFK--VKTT~----p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~ 79 (241)
+.++...+.|+.. .-...|+|+|.++. ++.-. |.... ..-|.|-|+.-.|+||+...|.|...+. ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4556667888864 33589999999875 43222 22111 2249999999999999999999988753 3565
Q ss_pred CCCCCCeEEEEEEe
Q 026266 80 DMQCKDKFLLQSVK 93 (241)
Q Consensus 80 ~~~~kdKFlVqs~~ 93 (241)
|...--.|-|..++
T Consensus 78 DRESlf~lnv~eIP 91 (224)
T 3gfu_C 78 DKESVYWLNLQDIP 91 (224)
T ss_dssp SSCEEEEEEEEEEC
T ss_pred CceEEEEEEeecCC
Confidence 53333334444443
No 28
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=81.58 E-value=2.1 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+.+++..+..|+.+...+..+|..|++++..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444445555554444433
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.09 E-value=3.3 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=16.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+|+.+..++....+.|++-.+.+..||.-|+|
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444555555555555555556665555
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.45 E-value=3.5 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=31.2
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
-+.+..+....+..|+.|...|..+...|++|+..|+...
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888888888888888777654
No 31
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=79.38 E-value=1.5 Score=24.73 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 185 SKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 185 ~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++|+||...+..-.++||+.++.|...
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676666666666777777666543
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.55 E-value=5 Score=26.34 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
...++...+..|+.+...|..+...|++|+..|+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666665554
No 33
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=77.94 E-value=6.6 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=20.8
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 169 ~~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
+.-|+|.-++-.++.|..|.+-.+.+.+|...+|.++.
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq 51 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIH 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 34455555555666666666555555555555544443
No 34
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.81 E-value=6.2 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
-|.+|..+|..|+++...+.+++..|+.++..
T Consensus 44 IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788899999999999999999988876654
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.48 E-value=6.7 Score=26.04 Aligned_cols=35 Identities=9% Similarity=0.258 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
...++...+..|+.+...|..+...|+.|...|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666665543
No 36
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.74 E-value=7.2 Score=27.63 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
|.+|..+|..|+++...+..+...|+++-..|+
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777888888776665555555554444443
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.66 E-value=7.2 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++..|+.+...|..+|..|++++..|+..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666665543
No 38
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=73.44 E-value=7.4 Score=29.21 Aligned_cols=83 Identities=13% Similarity=0.184 Sum_probs=49.3
Q ss_pred CeeeEEEEEEcCCCCe-EEEEeeecCCCceEEe--CCCe-eeCC--CCeEEEEEEecccccCCCCCCCCCeEEEEEEecC
Q 026266 22 KQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVR--PNTG-IVLP--RSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTN 95 (241)
Q Consensus 22 ~~~~~~l~L~N~s~~~-vaFKVKTT~p~~Y~Vr--P~~G-~i~P--~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~~~ 95 (241)
+...-.++.+|.+..+ =-|.+..-.|+-|.++ |.+| .|.| +..++=.+.+.... ....|=|+.|.+..-.
T Consensus 29 ~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~~g 104 (122)
T 3zy7_A 29 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNWNG 104 (122)
T ss_dssp CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEETT
T ss_pred CeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEECC
Confidence 3466778888998654 4588888889987765 7777 6888 66655444443321 1134455666555432
Q ss_pred C----CCCcccchhhhh
Q 026266 96 D----GTTAKDINAEMF 108 (241)
Q Consensus 96 ~----~~~~~d~~~~~f 108 (241)
. ..+..+++.+.|
T Consensus 105 ~~~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 105 YKVQSEAEVNNFPPQSW 121 (122)
T ss_dssp EEEEEEEEECCCCGGGT
T ss_pred EEEEEEEEECCCChhhC
Confidence 2 112334555666
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.84 E-value=3.9 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
...++...+..|+.+...|..+...|++|+..|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666655443
No 40
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=72.76 E-value=8.5 Score=25.43 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
..++...+..|+.+...|..+...|++|+..|+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566655555555555555555443
No 41
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.77 E-value=5 Score=27.80 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
|..|..+|..|+++...+.+++..|++|
T Consensus 52 L~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 52 LDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678889999988877777777766653
No 42
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.74 E-value=3 Score=35.58 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=31.7
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.+++.++..+.+...+|.++++.+++|..+|++|++.|++.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35566666777777778888888889999999998887653
No 43
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=71.73 E-value=8.1 Score=26.93 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 174 ~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+.+..+....+..|+.|...|..+...|++|+..|+..
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677888888888888888888888877754
No 44
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.50 E-value=12 Score=23.92 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=21.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+++.++..+.+.=.+|.+-....++|..+|+++++.|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555666666666666666666544
No 45
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=69.11 E-value=7.7 Score=25.22 Aligned_cols=32 Identities=9% Similarity=0.322 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
+|..+.+..+.++...+.++|..|++++..++
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666677777777777766554
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.98 E-value=11 Score=24.25 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~ 206 (241)
|+.|+..+++++..|+++.+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 47
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=68.74 E-value=25 Score=24.91 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026266 229 LVGIVLGYV 237 (241)
Q Consensus 229 ll~~llgy~ 237 (241)
++.+++.||
T Consensus 81 il~ii~~~~ 89 (91)
T 3hd7_A 81 ILIIIIVYF 89 (91)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 333344443
No 48
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=68.04 E-value=23 Score=23.30 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=30.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 174 QDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 174 ~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
++|..++...=..|.+|...+.++.++|+.|-..||+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 4577788877788889998888899999988777764
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=67.81 E-value=5.7 Score=26.45 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.+..|+.+...|..+|..|..++..|+..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566666666655544
No 50
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=67.65 E-value=13 Score=20.75 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+..|++|......+|-+|.||...|..
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456777777777788888888776653
No 51
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=67.63 E-value=11 Score=24.94 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
..+.++...+..|+.|...|..+...|++++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888999999999999999999987653
No 52
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.55 E-value=21 Score=26.73 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.+..|++|+..|.++.+....|++.||+.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36666666666655555555566666554
No 53
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=67.09 E-value=8.5 Score=22.28 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 186 KLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 186 ~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.|++....++.+|..|++|...|+..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555566777888888888777654
No 54
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.02 E-value=14 Score=21.26 Aligned_cols=26 Identities=4% Similarity=0.117 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 186 KLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 186 ~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.|++-...+..+|..|++|++.|+..
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555556777788888887777653
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.56 E-value=8.6 Score=26.21 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.6
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+.+|+.++.++......|..|...|.+++..|+.|+..+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567788888888888888899989999999998887654
No 56
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=64.88 E-value=16 Score=20.41 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
|..|+.|...+.++...|+=|...|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.34 E-value=12 Score=24.40 Aligned_cols=28 Identities=21% Similarity=0.448 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.+..|+++...+..+|..|+.++..|+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555444444443
No 58
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=63.86 E-value=19 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 185 SKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 185 ~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+.|++-...+..+|..|++|...|+..
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345555556777777777777776653
No 59
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=63.54 E-value=18 Score=20.95 Aligned_cols=27 Identities=0% Similarity=0.087 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 185 SKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 185 ~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+.|++-...+..++..|++|.+.|+..
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345555556777777777777777653
No 60
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.99 E-value=14 Score=26.05 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
+.++......|..+...+.++|..|++++..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666677788888888899999998887764
No 61
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=61.93 E-value=18 Score=20.99 Aligned_cols=27 Identities=7% Similarity=0.309 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 185 SKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 185 ~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+.|++....+..+|..|++|+..|+..
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555666778888888888877654
No 62
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.40 E-value=8.2 Score=24.92 Aligned_cols=31 Identities=6% Similarity=0.180 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
+-+.+++..+..|+.|...|.+++..|++++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888889999999999999999988653
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.87 E-value=16 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.+..+...|..|+.|+..|++++..|.-++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777777766665554
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.80 E-value=21 Score=23.42 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 182 ALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 182 ~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+.+..|+.+...+..+|..|+.++..|+..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777766666554
No 65
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=58.62 E-value=20 Score=26.06 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=22.9
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
-.++.+.++++++...+-++..+.+.+-.+.|++|+
T Consensus 59 qAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 59 QAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677777777766666666666666666654
No 66
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=58.21 E-value=14 Score=27.72 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCeEE---EEeeecCCC---ceEEeCCCeeeCCCCeEEE
Q 026266 26 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGIVLPRSTCDI 67 (241)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~G~i~P~~s~~V 67 (241)
..++|.|.+++.+. |+++-...+ .|.. |..=+|+||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 46899999887775 778755443 3544 55558999988654
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=57.87 E-value=21 Score=26.04 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 181 RALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 181 ~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
...+.+|+++...|.++|..|+++.+.|.-+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888888889999999998887766544
No 68
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.08 E-value=21 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQN 198 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~ 198 (241)
+.|.+.+|++|+++...+.++.
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666555544443
No 69
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.15 E-value=29 Score=25.37 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=8.7
Q ss_pred hhhccchHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDE 190 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE 190 (241)
+-||.++.+.......++.|
T Consensus 33 dlLKD~LEe~eE~~aql~Re 52 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQ 52 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 70
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=55.34 E-value=15 Score=25.42 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+..+...+..|++|+..+.+++..|++++..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33556677778888888888888888877644
No 71
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=55.17 E-value=28 Score=20.21 Aligned_cols=26 Identities=8% Similarity=0.350 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 186 KLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 186 ~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.|++-...+..++..|++|++.|+..
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45555556777888888888877754
No 72
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=55.17 E-value=56 Score=23.52 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=39.2
Q ss_pred CCCeeeEEEEEEcCCC---CeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccc
Q 026266 20 LKKQISCSLQLSNKTD---NYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQK 75 (241)
Q Consensus 20 ~~~~~~~~l~L~N~s~---~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~ 75 (241)
-++...+.++++|+=+ ..+.|.|--..-.+=... ..|-|.||+++.+.+.+.|.+
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~-~~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKIL-NVGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEE-EECCBCTTCEEEEEEEECCCS
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEE-EcCcCCCCCEEEEEEEEecCc
Confidence 3678899999999955 566888765433222111 136799999999999998864
No 73
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=55.04 E-value=20 Score=29.97 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=34.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
+..+|+++..+.+.+.+.++|++++..+....++.++.+|.+.
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888888888888888887777653
No 74
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=54.83 E-value=18 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
..+.....+|..|...+.+++..|++++..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355556677888888888888888887753
No 75
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=54.77 E-value=39 Score=24.62 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 026266 225 ILVGLVGIVLGY 236 (241)
Q Consensus 225 ~~v~ll~~llgy 236 (241)
++++++++++|.
T Consensus 95 i~~~i~~~~~~~ 106 (109)
T 3hd7_B 95 ILGIIIASTIGG 106 (109)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 333445555543
No 76
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.56 E-value=28 Score=24.83 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
+++.+...|..|+..+.+|+..+..|++.+++.
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555543
No 77
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.30 E-value=28 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.0
Q ss_pred hhhhhccchHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 026266 169 ERIEHQDKSTEA----RALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 169 ~~~~l~~k~~ea----~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+.++++.|+... ...++.|++|...++..+..++.
T Consensus 18 E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~ 56 (111)
T 2v66_B 18 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777766644 55788899999988888887753
No 78
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.29 E-value=28 Score=22.67 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 182 ALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 182 ~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
..+..|+++...+..+|..|+.++..|+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666667777777777776666654
No 79
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.15 E-value=33 Score=23.65 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=30.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
+.+|+.+++=....|..|.+......++..+|+.++..|.++.
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777777777777777777776654
No 80
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=53.10 E-value=31 Score=20.26 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
|++....+..++..|.+|...|+.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444555555555554443
No 81
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=53.05 E-value=37 Score=26.42 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=49.7
Q ss_pred eeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEE-EEecccccCCCCCCCCCeEEEEEEecCCC
Q 026266 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDII-VTMQAQKEAPPDMQCKDKFLLQSVKTNDG 97 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~-V~lq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (241)
.....-|.|.|+.++.|-.-+..-+.|.+| ..|.|+|+....|. +.+... ..--+|.||-+.--.+
T Consensus 28 t~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 28 TPFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKDG 94 (147)
T ss_dssp CCEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECSS
T ss_pred cceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcCC
Confidence 356788999999999999998887777776 68999999887774 333322 2346788888877653
No 82
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=51.98 E-value=45 Score=25.05 Aligned_cols=68 Identities=7% Similarity=0.063 Sum_probs=47.9
Q ss_pred CCeeeEEEEEEcCCCC-eEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCCCeEEEEEEecCCC
Q 026266 21 KKQISCSLQLSNKTDN-YVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDG 97 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (241)
++.+...++++|.+.. -=+|+|+-...+...-.-..+ |.||++.+|.+...+.. ...+-|..++-+.+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 6788999999999864 468888876666655443334 99999999999886421 24556666655544
No 83
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=51.91 E-value=14 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=21.3
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+..+=++++...+..|.+|...|.+++..|+++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333446677777888888888888888877664
No 84
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=51.74 E-value=35 Score=25.08 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 026266 180 ARALISKLKDEK 191 (241)
Q Consensus 180 a~~~i~~L~eE~ 191 (241)
+...+..|++||
T Consensus 30 Lk~~ve~lEkER 41 (106)
T 4e61_A 30 YKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 85
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=51.21 E-value=17 Score=29.60 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 026266 229 LVGIVLG 235 (241)
Q Consensus 229 ll~~llg 235 (241)
|++.|-|
T Consensus 77 L~e~LTG 83 (190)
T 4emc_A 77 LYEYLCN 83 (190)
T ss_dssp HHHHHHS
T ss_pred HHHHccC
Confidence 3333333
No 86
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=50.42 E-value=45 Score=25.48 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=40.4
Q ss_pred CeeeEEEEEEcCCCC-eEEEEeeecCCCceEEe--CCCe-eeCCCC--eEEEEEEecccccCCCCCCCCCeEEEEEEe
Q 026266 22 KQISCSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-IVLPRS--TCDIIVTMQAQKEAPPDMQCKDKFLLQSVK 93 (241)
Q Consensus 22 ~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~i~P~~--s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~ 93 (241)
+...-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+. .++-.+.+..... .+.+=|+.|.+..
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~----~~l~LR~klsY~~ 120 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNH 120 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEE
Confidence 345667788998764 45677787888887766 6666 588843 3444443332111 1245556665554
No 87
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.27 E-value=36 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
|++-...+..++..|++|...|+.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333444555555555555543
No 88
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=50.21 E-value=32 Score=20.01 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el 205 (241)
+...+.+.+.+.+||..|.++.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 4445555666667777776654
No 89
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=49.84 E-value=12 Score=23.13 Aligned_cols=17 Identities=24% Similarity=0.596 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026266 224 VILVGLVGIVLGYVMKK 240 (241)
Q Consensus 224 v~~v~ll~~llgy~~~~ 240 (241)
++++++++++++||+++
T Consensus 21 v~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45566667777777765
No 90
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=49.47 E-value=47 Score=21.03 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
.|+++..++.-|+.|...+++|.+.-
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 46677777777777776666665443
No 91
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=49.21 E-value=33 Score=25.73 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=21.7
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.++.++.++++++..-+.+++.++.++..|+.|++.+++.
T Consensus 44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444555677777777766554
No 92
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.19 E-value=31 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.|..|..|...|+.+|+.|.+|-.+-++
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555666666666666666666554443
No 93
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=48.84 E-value=58 Score=24.99 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=40.2
Q ss_pred eeeEEEEEEcCCCC-eEEEEeeecCCCceEEe--CCCe-eeCCCC--eEEEEEEecccccCCCCCCCCCeEEEEEEec
Q 026266 23 QISCSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-IVLPRS--TCDIIVTMQAQKEAPPDMQCKDKFLLQSVKT 94 (241)
Q Consensus 23 ~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~i~P~~--s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~~ 94 (241)
...-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+. .++-.+.+...... +.+=|+.|.+..-
T Consensus 54 ~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~~----~lklR~klsY~~~ 127 (146)
T 1iu1_A 54 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQKQ----QLRMRIKLTYNHK 127 (146)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTCC----CCCCEEEEEEEET
T ss_pred EEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCC----CEEEEEEEEEEEC
Confidence 35567788998764 45677777788877766 6666 588844 34434433321111 3455666655543
No 94
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=48.70 E-value=29 Score=23.80 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
..-++.+|..|.+..+.|..||.-|++
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555566665553
No 95
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=48.62 E-value=29 Score=28.06 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
=+...+..|+++...+.++|++|++|-..
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666665543
No 96
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.86 E-value=41 Score=22.06 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
+..|..+...+.++|..|+.++..|+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 97
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.55 E-value=51 Score=20.88 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++.++.+++..|.+....|..-.+..++|+..|+.+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555555555556666665543
No 98
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.48 E-value=53 Score=25.12 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=10.3
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQ 197 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q 197 (241)
++.++.++.+.+..+.+|...+..+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 99
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=47.35 E-value=21 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 185 SKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 185 ~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
..|+++++.+.++.+.+++|+..|+..
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 457777778888888888888887754
No 100
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=47.04 E-value=27 Score=27.05 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCeEE---EEeeecCCCc--eEEeCCCeeeCCCCeEEE
Q 026266 26 CSLQLSNKTDNYVA---FKVKTTNPKK--YCVRPNTGIVLPRSTCDI 67 (241)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~~--Y~VrP~~G~i~P~~s~~V 67 (241)
..++|.|.+++.+. |+|+-...+. ...-|..=+|+||.+++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 46889999887764 5666443332 233455558999988654
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.71 E-value=37 Score=21.63 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=11.1
Q ss_pred hhhhccchHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKN 192 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~ 192 (241)
++.|+...+++.+.+..|+++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444433
No 102
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=45.88 E-value=17 Score=24.94 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=16.8
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNA 194 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~ 194 (241)
.+.||++..|+...+++|+.|.+-|
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777765543
No 103
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=45.12 E-value=51 Score=24.64 Aligned_cols=38 Identities=29% Similarity=0.534 Sum_probs=26.3
Q ss_pred CCCCcc-eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeee
Q 026266 1 MSTGEL-LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKT 44 (241)
Q Consensus 1 m~~~~l-l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT 44 (241)
|..++| +.++|.. .+....-.|+|+|+++.++-+...+
T Consensus 2 ~~~~~l~~~v~~~~------~g~~v~~~ltv~N~s~~~v~l~f~S 40 (120)
T 3isy_A 2 MENQEVVLSIDAIQ------EPEQIKFNMSLKNQSERAIEFQFST 40 (120)
T ss_dssp --CCSEEEEEEEEE------CSSCEEEEEEEEECSSSCEEEEESS
T ss_pred ccccEEEEEEeecc------CCCeEEEEEEEEcCCCCcEEEEeCC
Confidence 444443 5566644 3457889999999999999887765
No 104
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.79 E-value=47 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=26.8
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
...++.++.+++....++.+|..+|.+.++.+..+++.+
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ 63 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777777777666643
No 105
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.58 E-value=16 Score=22.54 Aligned_cols=17 Identities=12% Similarity=0.530 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026266 224 VILVGLVGIVLGYVMKK 240 (241)
Q Consensus 224 v~~v~ll~~llgy~~~~ 240 (241)
+++++++++++.||+++
T Consensus 20 v~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45555666677777765
No 106
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.44 E-value=53 Score=22.50 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=26.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
..+..++.+++....++.+|...+.+.++.|..+++..
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777777777777777777777777766643
No 107
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=43.31 E-value=63 Score=20.81 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026266 182 ALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 182 ~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
..+=.|++|.+.+.++++++++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k 31 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKK 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666654
No 108
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=42.83 E-value=33 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQ 196 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~ 196 (241)
.|-+++...++|++|.+.+++
T Consensus 38 EYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444
No 109
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=42.54 E-value=35 Score=30.10 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCCCCCCeEEEEEEecCCC
Q 026266 26 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDG 97 (241)
Q Consensus 26 ~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~~~kdKFlVqs~~~~~~ 97 (241)
..+.|+|.++- -|.++-+++..|.+.++.=.|+|+++.++.|-+-...+ ...=+|-|--+.+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecCC
Confidence 68899998875 57788899999999999999999999999987753221 2345677766555443
No 110
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.34 E-value=32 Score=26.62 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=28.3
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.++.+..++...+.+|.+|...+.++.++|++++...
T Consensus 22 ~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 22 ILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554555778888899999888889998888776643
No 111
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=42.28 E-value=63 Score=22.63 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
++..+-.+|-++...+..++..|+++...
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444333
No 112
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.03 E-value=33 Score=24.46 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
++..|+.|...+..|.+.|++|+..+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444433
No 113
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.92 E-value=67 Score=22.40 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
++..+|..|+.|...|+-+++.+.-++.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444444444444444444444433
No 114
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=41.60 E-value=50 Score=19.08 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 186 KLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 186 ~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
.|++-...+..+|..|.+|...|+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444566667777777766654
No 115
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=41.13 E-value=63 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
...++...|.+|+++...-..++..+.++++.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45567777777777777666677777777763
No 116
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.89 E-value=51 Score=18.93 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
|++-...+..++..|.+|...|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333455555555555555544
No 117
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.73 E-value=55 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 026266 196 QQNNKLRQDLELL 208 (241)
Q Consensus 196 ~q~~~l~~el~~l 208 (241)
.++.++.+|++.|
T Consensus 47 ~~~~~ie~ElEeL 59 (97)
T 2eqb_B 47 EEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555433
No 118
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.30 E-value=73 Score=21.93 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 182 ALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 182 ~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.....+..+...|.++|..|+.++..|++.
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667788888888887777654
No 119
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=40.12 E-value=71 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 184 ISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
...+..+...|.++|..|+.+++.|++.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666666666666555544
No 120
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.10 E-value=44 Score=30.13 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 026266 199 NKLRQDLELL 208 (241)
Q Consensus 199 ~~l~~el~~l 208 (241)
++|..++..+
T Consensus 48 r~l~n~~~el 57 (403)
T 4etp_A 48 RTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3333333333
No 121
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.01 E-value=74 Score=20.23 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=19.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
+|..+.+++..++..|..+.+.++-+.+..+.|-
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666655555555555443
No 122
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.63 E-value=44 Score=27.00 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.+++++.+.+.+|++|..+|.+|.++..++++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777888888888888888888887776654
No 123
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.49 E-value=58 Score=28.56 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=27.3
Q ss_pred hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 167 FTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 167 ~~~~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
..++..++..+....+.|..|++....+..+...|++++..++..
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566677777777666666666666666655543
No 124
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=37.88 E-value=69 Score=19.58 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 182 ALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 182 ~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.++.+|+++.....-++-.|+.++..+
T Consensus 11 sqvvkltkql~eqt~~rv~lq~qlq~l 37 (48)
T 2kes_A 11 SQVVKLTKQLKEQTVERVTLQNQLQQF 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766666777777666543
No 125
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.51 E-value=80 Score=21.99 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
++...+....++.++.....+|+.|..|+..++
T Consensus 33 Ls~vr~~ni~~eskL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 33 MEAIRTDNQNFASQLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333334444444444554444444333
No 126
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=37.25 E-value=1.1e+02 Score=21.50 Aligned_cols=8 Identities=13% Similarity=0.684 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026266 227 VGLVGIVL 234 (241)
Q Consensus 227 v~ll~~ll 234 (241)
++++.+++
T Consensus 74 i~~iv~~i 81 (91)
T 3hd7_A 74 LGVICAII 81 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 127
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.10 E-value=70 Score=19.44 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
++.+.|.++..|.....++...||..+..|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666665555666666655444433
No 128
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=36.46 E-value=77 Score=23.05 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
.++..+.+++..|.++.+.|-++...+++.+..+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777766666666666666655544
No 129
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.28 E-value=65 Score=24.01 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
.+.+++..|..|+-|..++..++..|.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555555555555555555555543
No 130
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=35.68 E-value=1.5e+02 Score=28.02 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=38.9
Q ss_pred eeeEEEEEEcCCCCeEEEEeeecCCCc--eEEeCCCeee-CCCCeEEEEEEecc
Q 026266 23 QISCSLQLSNKTDNYVAFKVKTTNPKK--YCVRPNTGIV-LPRSTCDIIVTMQA 73 (241)
Q Consensus 23 ~~~~~l~L~N~s~~~vaFKVKTT~p~~--Y~VrP~~G~i-~P~~s~~V~V~lq~ 73 (241)
..+..-+++|..+..-.|+++.+.|.- -.|.|..=.+ ..|++..++|++..
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 345556899999999999999999875 4567887655 56788888888754
No 131
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=35.22 E-value=44 Score=29.31 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=26.6
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 169 ERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 169 ~~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++..+++++..+.++|..|++....+..+...|++.+..|+..
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677778888777777777777777766655543
No 132
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.14 E-value=61 Score=22.10 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 181 RALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 181 ~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
.+.|..|+.+++....+.+.|+.+++.++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33566677766666667777777776543
No 133
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=35.05 E-value=18 Score=26.08 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDE 190 (241)
Q Consensus 177 ~~ea~~~i~~L~eE 190 (241)
.++++..+.+|.+|
T Consensus 51 WaKL~Rk~DKl~~e 64 (93)
T 3sjb_C 51 WTKNNRKLDSLDKE 64 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 134
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.71 E-value=95 Score=21.93 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
+.++..+|..+..|+..+.-+...|+.++..++
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555554444
No 135
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.32 E-value=89 Score=20.85 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~el~~l 208 (241)
.+.|...++++.+.|+-|++.+
T Consensus 54 ~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555443
No 136
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=34.25 E-value=87 Score=22.30 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=24.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
..++.++.+++....++.+|..++.+.++.++++++
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455556666666677777777777777777766655
No 137
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.21 E-value=77 Score=23.64 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
++.|+..+|..|+.++..+..+.+.|+.+...+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 477888888888888888888888887665543
No 138
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.53 E-value=71 Score=18.46 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026266 191 KNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 191 ~~~~~~q~~~l~~el~~l~~ 210 (241)
...+..++..|.+|+..|+.
T Consensus 10 vEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 10 LEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33455555566666665554
No 139
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.15 E-value=1.1e+02 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
|..+...+.+|+.++.....+..+|++
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~ 33 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLRE 33 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444444444444444444444443
No 140
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=32.99 E-value=90 Score=22.61 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=32.3
Q ss_pred eeEEEEEEcCCCCeEE-EEeeec-----------------CCCceEEeCC--CeeeCC-CCeEEEEEEec
Q 026266 24 ISCSLQLSNKTDNYVA-FKVKTT-----------------NPKKYCVRPN--TGIVLP-RSTCDIIVTMQ 72 (241)
Q Consensus 24 ~~~~l~L~N~s~~~va-FKVKTT-----------------~p~~Y~VrP~--~G~i~P-~~s~~V~V~lq 72 (241)
....++|+|.++.+|. ++|.=+ +-..|.|+|. -|-|.| |.++.+-+.-.
T Consensus 17 f~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s~sG~~vt~~n~~wN~~la~~G~s~~fGf~g~ 86 (107)
T 3ndz_E 17 ASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNIN 86 (107)
T ss_dssp EEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEEecCCEEEEEECCcccccCCCCccEEEEEEEe
Confidence 4678889998765543 332222 2367899875 589999 98877665543
No 141
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.50 E-value=85 Score=19.04 Aligned_cols=25 Identities=20% Similarity=0.330 Sum_probs=14.8
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQ 196 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~ 196 (241)
++..+.+|++..|+.|+.|..-|+|
T Consensus 14 ~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4555666666666666666554443
No 142
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=31.96 E-value=1.1e+02 Score=21.84 Aligned_cols=28 Identities=4% Similarity=0.136 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
+++.+.+..|..|+..+-.+...++.|.
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444445555555555544444444433
No 143
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=31.66 E-value=99 Score=20.60 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 026266 194 AVQQNNKLRQDLELLR 209 (241)
Q Consensus 194 ~~~q~~~l~~el~~l~ 209 (241)
+.|+..+|..|++.+.
T Consensus 37 L~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 37 NNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 144
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=31.58 E-value=86 Score=25.34 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026266 184 ISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 184 i~~L~eE~~~~~~q~~~l~ 202 (241)
+..|++|...++..+..|+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544443
No 145
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=31.34 E-value=42 Score=22.16 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.0
Q ss_pred EEEEEcCCCCeEEEEeeecCC
Q 026266 27 SLQLSNKTDNYVAFKVKTTNP 47 (241)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p 47 (241)
.|++...+.+.+.|||+.|.|
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577777777889999998776
No 146
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=31.26 E-value=1e+02 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCeEE---EEeeecC---CCceEEeCCCeeeCCCCeEEEEEEec
Q 026266 26 CSLQLSNKTDNYVA---FKVKTTN---PKKYCVRPNTGIVLPRSTCDIIVTMQ 72 (241)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~---p~~Y~VrP~~G~i~P~~s~~V~V~lq 72 (241)
..++|.|.+++.+. |+++-.. +..-+.-|..=+|.||.+++ |.-.
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vt--Iws~ 69 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT--IWAA 69 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEE--EEET
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEE--EEeC
Confidence 46889998887664 6777552 22333356667899998764 5544
No 147
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.16 E-value=73 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 178 TEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 178 ~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
.+++..|..|+-|..++..++..|
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sL 64 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASL 64 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333444444444444433333333
No 148
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.05 E-value=88 Score=22.29 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=25.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+++.++.++...+..|..++..+..+...+++.+..+..
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444456666667777777777676666666666665543
No 149
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.87 E-value=1.2e+02 Score=20.91 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=21.7
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+|++--.++...|.+|+.|.+.+......|++....|
T Consensus 36 EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 36 DLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666667766666666666665544444
No 150
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.83 E-value=94 Score=23.16 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=18.6
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+..++.++...+....+....+..+.++++++...|++
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555544443
No 151
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.81 E-value=90 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=27.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
.++.+...+...+..|+++...+..+...+.+++..+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777788888877777777777776665443
No 152
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.67 E-value=69 Score=28.80 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=16.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
+++.++.++.+++..|+++...+..+++.+++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544443
No 153
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.56 E-value=1.2e+02 Score=20.95 Aligned_cols=31 Identities=10% Similarity=0.260 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
.+..+++..|..|+.+......+...++.|+
T Consensus 20 ~rN~~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 20 TRNAELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444444443
No 154
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=30.53 E-value=43 Score=19.81 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 026266 221 FIFVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 221 ~~~v~~v~ll~~llgy~~~~ 240 (241)
+..++.++|++.++-|++++
T Consensus 18 vG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHeec
Confidence 44555666666655555554
No 155
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.27 E-value=1e+02 Score=24.93 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=9.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQN 198 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~ 198 (241)
+++....+|..|+++.+++..+.
T Consensus 35 ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333334444444444443333
No 156
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.77 E-value=48 Score=28.06 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++.++..++..|......+.++.+.+++|+..|+.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556555555555556666666666655544
No 157
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=29.28 E-value=1e+02 Score=24.92 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=27.9
Q ss_pred EEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 27 SLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
.|++.|+|..+|.|-=-+..-+.+ . .|.|.|+++..+.+
T Consensus 139 ~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 139 SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 599999999999986322232332 2 37999999987764
No 158
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=28.80 E-value=1.2e+02 Score=23.45 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=36.9
Q ss_pred EEEEEEcCCCC-eEEEEeeecCCCceEEe--CCCe-eeCCCCe------EEEEEEecccccCCCCCCCCCeEEEEEEe
Q 026266 26 CSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-IVLPRST------CDIIVTMQAQKEAPPDMQCKDKFLLQSVK 93 (241)
Q Consensus 26 ~~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~i~P~~s------~~V~V~lq~~~~~p~~~~~kdKFlVqs~~ 93 (241)
-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+.. ++-.+.+..... ...+=|+.|.+..
T Consensus 57 i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~n~~~----~~l~LR~klsY~~ 130 (153)
T 1p4u_A 57 VVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPLK----EKVRLRYKLTFAL 130 (153)
T ss_dssp EEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEECTTC----CCCCEEEEEEEEE
T ss_pred EEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEE
Confidence 36677888764 44677777778877766 6556 4777553 444443432211 2344556665554
No 159
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=28.61 E-value=92 Score=18.22 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026266 183 LISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 183 ~i~~L~eE~~~~~~q~~~l 201 (241)
.|..-.+|..++.++|..|
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3333444455555555554
No 160
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=28.32 E-value=1.1e+02 Score=20.98 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=28.0
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
.++..|--.+..|-.|+++......++..++++++
T Consensus 34 ~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLD 68 (77)
T 3mtu_E 34 QLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLD 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55566777788899999888888888888888876
No 161
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=28.04 E-value=97 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
..+++.+++.+|+++......+++.++++|+
T Consensus 136 tV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888777788888888776
No 162
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=28.02 E-value=32 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhc
Q 026266 176 KSTEARALISKLKDEKN------------NAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~------------~~~~q~~~l~~el~~l~~~~ 212 (241)
++.++..++..|+.|++ .+.|+..+|.+|++.+....
T Consensus 31 ~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L 79 (94)
T 3vlc_E 31 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEI 79 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666654 35566666666666555443
No 163
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=27.69 E-value=75 Score=16.89 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026266 187 LKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 187 L~eE~~~~~~q~~~l~~e 204 (241)
|++|.-.+..+.+.|+.|
T Consensus 5 lkdevgelkgevralkde 22 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHH
Confidence 333433444444444444
No 164
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=27.56 E-value=88 Score=23.28 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=36.0
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCe-----EEEEeeecC-------------CC-ceE------EeCCCeeeC
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------PK-KYC------VRPNTGIVL 60 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p~-~Y~------VrP~~G~i~ 60 (241)
-+.++|.+|..+.+- ..-.++++|....+ =-|-+-+.. +. .|. +--..++|.
T Consensus 11 ~m~F~p~~i~V~k~G---~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~ 87 (128)
T 2iaa_C 11 SMQFNTKSIVVDKTC---KEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIG 87 (128)
T ss_dssp TSCBSCSEEEECTTC---SEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CceEecCEEEEecCC---cEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeC
Confidence 356677777764321 24589999997542 223333321 10 111 111256799
Q ss_pred CCCeEEEEEEe
Q 026266 61 PRSTCDIIVTM 71 (241)
Q Consensus 61 P~~s~~V~V~l 71 (241)
||++.+|+++.
T Consensus 88 pGes~~vtf~~ 98 (128)
T 2iaa_C 88 GGETDSVTFDV 98 (128)
T ss_dssp TTCEEEEEEES
T ss_pred CCCEEEEEEec
Confidence 99999999986
No 165
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=27.22 E-value=78 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
|..+..+|..|++|+..+.++...+
T Consensus 34 L~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 34 LKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888777666665544
No 166
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=27.21 E-value=1.2e+02 Score=19.03 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=12.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
+|+-+..+...|..|+.......||+..|
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 33334444445555544444444444433
No 167
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=27.03 E-value=1.4e+02 Score=21.83 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=22.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
+.+++.++++...+|..|=.+|..+.++.-.++
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K 46 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLK 46 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777777777777777666665554
No 168
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.93 E-value=1.5e+02 Score=20.19 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDL 205 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el 205 (241)
+.+++..+.+...+...+.++.+.|.+++
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555443
No 169
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.92 E-value=41 Score=25.27 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=29.3
Q ss_pred CeeeEEEEEEcCCCC-eEEEEeeecCCCceEEe--CCCe-eeCCCCe
Q 026266 22 KQISCSLQLSNKTDN-YVAFKVKTTNPKKYCVR--PNTG-IVLPRST 64 (241)
Q Consensus 22 ~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~Vr--P~~G-~i~P~~s 64 (241)
+...-.++.+|.+.. -=-|.+.--.|+-|.++ |.+| .|.|+..
T Consensus 38 ~~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 38 ALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp TEEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTC
T ss_pred CeEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCC
Confidence 345667788998764 44577777778876655 6666 5888554
No 170
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.83 E-value=1.5e+02 Score=20.08 Aligned_cols=29 Identities=7% Similarity=0.331 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+..+++..+..|+........+...++.|
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444444444333
No 171
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=26.74 E-value=1.2e+02 Score=30.21 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=35.2
Q ss_pred eeeEEEEEEcC------CCCeEE--------------EEeeecCCCceEEeCCCee--eCCCCeEEEEEEec
Q 026266 23 QISCSLQLSNK------TDNYVA--------------FKVKTTNPKKYCVRPNTGI--VLPRSTCDIIVTMQ 72 (241)
Q Consensus 23 ~~~~~l~L~N~------s~~~va--------------FKVKTT~p~~Y~VrP~~G~--i~P~~s~~V~V~lq 72 (241)
.....|+|+|. ++=.|. |+|..-+-..|.+.|.-++ |.||+++.|.++..
T Consensus 39 ~~~~~~tl~n~~~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~~~~~ 110 (858)
T 1c7s_A 39 CNRVLFTLSNDGQAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIPVVAE 110 (858)
T ss_dssp EEEEEEEEEECSSCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEEEEEE
T ss_pred eeEEEEEEEcCCCCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEEEEec
Confidence 35678899998 222333 3454445556777898887 99999999999753
No 172
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.56 E-value=1.2e+02 Score=21.65 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=23.6
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL 207 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~ 207 (241)
.++.+...+...|..|+++...+..+...++.++..
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777777776666666665543
No 173
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.50 E-value=43 Score=18.00 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 026266 193 NAVQQNNKLRQDL 205 (241)
Q Consensus 193 ~~~~q~~~l~~el 205 (241)
.+.+....|+|..
T Consensus 11 aleqkiaalkqki 23 (28)
T 3ra3_A 11 ALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344433
No 174
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=26.34 E-value=59 Score=22.77 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCCeEEEEeeecCC
Q 026266 25 SCSLQLSNKTDNYVAFKVKTTNP 47 (241)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p 47 (241)
.-.|++...+.+.|.||||.|.+
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCh
Confidence 35678888778899999998876
No 175
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.22 E-value=80 Score=16.92 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 026266 196 QQNNKLRQDLEL 207 (241)
Q Consensus 196 ~q~~~l~~el~~ 207 (241)
+.|..|+||...
T Consensus 7 qknarlkqeiaa 18 (28)
T 3ra3_B 7 QKNARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 444444554443
No 176
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=26.19 E-value=71 Score=26.18 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=31.3
Q ss_pred eeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 14 LKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 14 L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
|.|...- ..|+++|+|..+|.|-=-+-.-+ .+ ..+.|.|+++..+.+
T Consensus 141 L~~~~~g-----~~l~v~NptPyyvtl~~l~~~g~--~i--~~~mv~P~s~~~~~l 187 (218)
T 4ay0_A 141 LSWKVDG-----GKLIAENPSPFYMNIGELTFGGK--SI--PSHYIPPKSTWAFDL 187 (218)
T ss_dssp CEEEEET-----TEEEEEECSSSCEEEEEEEETTE--EC--CCCEECTTEEEEEEC
T ss_pred eEEEEeC-----CEEEEECCCCCEEEEEEEEECCE--Ec--cCcEECCCCeeEEEC
Confidence 6665432 35999999999999852222222 33 248999999877654
No 177
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.16 E-value=1.4e+02 Score=21.24 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
.+.++...+..+.+++..+..+...++.++..+++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666655544
No 178
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.73 E-value=65 Score=30.24 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
|++..|..|+++++..+++.+.||.-++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLe 141 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888887776666666664433
No 179
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.51 E-value=1.4e+02 Score=22.54 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=29.9
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.++.++..+...+.+|++....+..+...++..+..+.+..
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888877777777777766655543
No 180
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=24.78 E-value=96 Score=23.08 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=36.1
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCe-----EEEEeeecC-------------CC-ceE------EeCCCeeeC
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNY-----VAFKVKTTN-------------PK-KYC------VRPNTGIVL 60 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~-----vaFKVKTT~-------------p~-~Y~------VrP~~G~i~ 60 (241)
-+.++|.+|..+.+ + ..-+++++|...-+ =-|-+-+.. +. .|. +--..++|.
T Consensus 12 ~m~F~p~~i~V~k~-G--~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~ 88 (129)
T 2ccw_A 12 AMQYNVKEIVVDKS-C--KQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIG 88 (129)
T ss_dssp TSCBSCSEEEECTT-C--SEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBC
T ss_pred CccEecceEEEecC-C--CEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEEC
Confidence 35566767666332 1 24589999997542 334333321 00 110 111356799
Q ss_pred CCCeEEEEEEec
Q 026266 61 PRSTCDIIVTMQ 72 (241)
Q Consensus 61 P~~s~~V~V~lq 72 (241)
||++.+|+.+.-
T Consensus 89 pGet~svtf~~~ 100 (129)
T 2ccw_A 89 GGESDSVTFDVS 100 (129)
T ss_dssp TTCEEEEEEEGG
T ss_pred CCCEEEEEEecc
Confidence 999999998763
No 181
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=24.40 E-value=68 Score=19.92 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH--HHHhc
Q 026266 222 IFVILVGLVGIVL--GYVMK 239 (241)
Q Consensus 222 ~~v~~v~ll~~ll--gy~~~ 239 (241)
.+.+.+|+++||+ ||++.
T Consensus 16 aigl~v~f~~~L~PagWVLs 35 (46)
T 1v54_M 16 AIGLSVTFLSFLLPAGWVLY 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 3456667777776 67664
No 182
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.14 E-value=1.3e+02 Score=21.99 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQDLELL 208 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~el~~l 208 (241)
+....+.+..++...+.++...|+.|+...
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555556666666666543
No 183
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=24.04 E-value=82 Score=23.96 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=30.0
Q ss_pred eeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCC
Q 026266 42 VKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP 78 (241)
Q Consensus 42 VKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p 78 (241)
++|-+|+.-.+.=..-+|.||++..|++........|
T Consensus 43 ~n~pSpDLtvisiDk~vL~PGESA~it~IvKDid~nP 79 (146)
T 2lv4_A 43 SNTPSPDLTVMSIDKSVLSPGESATITTIVKDIDGNP 79 (146)
T ss_dssp CCCBCGGGCEEECCCCCBCTTCEEEEEEECBBTTSCB
T ss_pred ecCCCCCcEEEecCccccCCCcceEEEEEEEeCCCCc
Confidence 4555788888888888999999999999998765444
No 184
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=23.97 E-value=2.2e+02 Score=20.95 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=37.7
Q ss_pred eEeccCCCeeeEEEEEEcCCCCeE-EEEeeecCCCceEEe--CCCe-eeCCC--CeEEEEEEe
Q 026266 15 KFPFELKKQISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-IVLPR--STCDIIVTM 71 (241)
Q Consensus 15 ~F~~~~~~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~Vr--P~~G-~i~P~--~s~~V~V~l 71 (241)
.|.........-.++.+|.+..+| -|.+.--.|+-|.++ |.+| .|.|+ ..++=.+.+
T Consensus 24 ~~~~~~~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 24 EISRESNSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp EEEECSSSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE
T ss_pred EEEeCCCCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE
Confidence 334443445667788889976544 588888889987765 7777 68898 444433333
No 185
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.96 E-value=1.3e+02 Score=23.53 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=15.8
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
..|+..-.+....|.+-+++++.|..|...++
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555554443
No 186
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.87 E-value=1.4e+02 Score=24.53 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=4.3
Q ss_pred hHHHHHHHHHHH
Q 026266 177 STEARALISKLK 188 (241)
Q Consensus 177 ~~ea~~~i~~L~ 188 (241)
+.++.+++..|+
T Consensus 68 l~~l~~e~~el~ 79 (213)
T 4ani_A 68 IAELEAKLSEME 79 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 187
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=23.72 E-value=3e+02 Score=26.15 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=39.6
Q ss_pred eeEEEEEEcCCCCeEEEEeeecCCCceE--EeCCCeee-CCCCeEEEEEEeccc
Q 026266 24 ISCSLQLSNKTDNYVAFKVKTTNPKKYC--VRPNTGIV-LPRSTCDIIVTMQAQ 74 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~--VrP~~G~i-~P~~s~~V~V~lq~~ 74 (241)
.+..-++||..+..-.|+++.++|.... |.|..=.. ..+++....|++.+.
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 6778889999988888999999998766 56998766 489999999988753
No 188
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=29.49 E-value=17 Score=19.93 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 026266 224 VILVGLVGIVLGYVMK 239 (241)
Q Consensus 224 v~~v~ll~~llgy~~~ 239 (241)
+++-.++|..+|||+-
T Consensus 5 l~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFLF 20 (26)
Confidence 4555667888888874
No 189
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.63 E-value=1.3e+02 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCeEE---EEeeecCCC---ceEEeCCCeeeCCCCeEEEEEEec
Q 026266 26 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGIVLPRSTCDIIVTMQ 72 (241)
Q Consensus 26 ~~l~L~N~s~~~va---FKVKTT~p~---~Y~VrP~~G~i~P~~s~~V~V~lq 72 (241)
..++|.|.+++.+. |+|+-...+ .-+.-|..=+|.||.+++ |.-.
T Consensus 34 efV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~Vt--Iws~ 84 (139)
T 2lll_A 34 KFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVT--VWAA 84 (139)
T ss_dssp SEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEE--EEEG
T ss_pred CEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEE--EEeC
Confidence 46899999887664 677765332 223356667899998765 5543
No 190
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.53 E-value=1.1e+02 Score=27.52 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred hhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 026266 166 AFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE---LLRRE 211 (241)
Q Consensus 166 ~~~~~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~---~l~~~ 211 (241)
+-.+..+|++.+.++.+.+..|+++...+..+++.+++++. ..|++
T Consensus 1 ~~~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~ 49 (412)
T 3u06_A 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 49 (412)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 191
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.52 E-value=1.3e+02 Score=34.54 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=22.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
+.+++++++++.+..|+++-+.+.+|.+.|++|++..+
T Consensus 2032 ~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666766655433
No 192
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.21 E-value=84 Score=25.78 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=16.8
Q ss_pred eeEeccCCCeeeEEEEEEcCCCCeEEEEeeecC
Q 026266 14 LKFPFELKKQISCSLQLSNKTDNYVAFKVKTTN 46 (241)
Q Consensus 14 L~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~ 46 (241)
++++...+......|+.+=..+.+..|++--|.
T Consensus 6 ~ri~~s~~~~~~~~l~~~w~~~~~~~f~l~~Td 38 (213)
T 1ik9_A 6 SRIHLVSEPSITHFLQVSWEKTLESGFVITLTD 38 (213)
T ss_dssp EEEEETTEEEEEEEEEEEESSCGGGEEEEEEEC
T ss_pred EEeeecCCCCCeEEEEEEEcCCCCCceEEEEec
Confidence 445544433344445554444556777766443
No 193
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=23.00 E-value=2.8e+02 Score=21.81 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=39.1
Q ss_pred CeeeEEEEEEcCCCC-----eEEEEeeecCCCc-eEEeCCCeeeCCCCeEEEEEEec
Q 026266 22 KQISCSLQLSNKTDN-----YVAFKVKTTNPKK-YCVRPNTGIVLPRSTCDIIVTMQ 72 (241)
Q Consensus 22 ~~~~~~l~L~N~s~~-----~vaFKVKTT~p~~-Y~VrP~~G~i~P~~s~~V~V~lq 72 (241)
-.....|+|+|+.+. -++|.++...-.. --+.|..|.|+++++..|.|-+.
T Consensus 62 ~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~ 118 (174)
T 1yyc_A 62 VDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK 118 (174)
T ss_dssp EEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEE
Confidence 346789999999874 5789999754432 34779999999999888777654
No 194
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.00 E-value=1.2e+02 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=25.1
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
.++..+++++..+|..|+.+...+..+.+.+++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 466678888888888888887777777777754
No 195
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.86 E-value=89 Score=21.96 Aligned_cols=17 Identities=0% Similarity=-0.007 Sum_probs=7.2
Q ss_pred hhccchHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLK 188 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~ 188 (241)
+|+++..++.++|..++
T Consensus 12 ~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 12 LLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 196
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.65 E-value=98 Score=24.88 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 180 ARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 180 a~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
....|..|+.+...|.+||+.|++|
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555566655543
No 197
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=22.61 E-value=1.6e+02 Score=21.28 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=26.5
Q ss_pred CCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeC
Q 026266 21 KKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRP 54 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP 54 (241)
+......++++|.++..+.||+.==...-+.|.+
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~ 68 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRD 68 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCS
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCC
Confidence 4566788999999999999998866666666654
No 198
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.45 E-value=1.7e+02 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026266 181 RALISKLKDEKNNAVQQNNKLR 202 (241)
Q Consensus 181 ~~~i~~L~eE~~~~~~q~~~l~ 202 (241)
-..|..+++|+..+.++|+.|+
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555656665554
No 199
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=22.28 E-value=1.2e+02 Score=17.49 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026266 186 KLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 186 ~L~eE~~~~~~q~~~l~~el~ 206 (241)
+|--|+..+.+.++.|.+.++
T Consensus 11 kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 11 KLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544
No 200
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.23 E-value=2e+02 Score=19.99 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 179 EARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 179 ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
++-..|..|++|.+.+.++|+.|+.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888887764
No 201
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.02 E-value=1.3e+02 Score=20.97 Aligned_cols=31 Identities=6% Similarity=0.142 Sum_probs=14.6
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 173 HQDKSTEARALISKLKDEKNNAVQQNNKLRQ 203 (241)
Q Consensus 173 l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~ 203 (241)
++.+...+...|..|+++...+..+...++.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554444444444443
No 202
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=21.91 E-value=1.8e+02 Score=22.19 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=37.6
Q ss_pred eeeEEEEEEcCCCC-----eEEEEeeecCCCc-eEEeCCCeeeCCCCeEEEEEEec
Q 026266 23 QISCSLQLSNKTDN-----YVAFKVKTTNPKK-YCVRPNTGIVLPRSTCDIIVTMQ 72 (241)
Q Consensus 23 ~~~~~l~L~N~s~~-----~vaFKVKTT~p~~-Y~VrP~~G~i~P~~s~~V~V~lq 72 (241)
.....|+++|+.+. -++|.++...-.. --+-|..|.|+++++..|.|-..
T Consensus 40 ~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 40 EYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp CEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 35789999999874 5789998755443 34678889999999888777553
No 203
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.85 E-value=1.3e+02 Score=26.01 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=18.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 175 DKSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 175 ~k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
+.+.++...+..|.+++..+..+..+|++.
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345556666666666666666666666666
No 204
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.74 E-value=1.9e+02 Score=19.51 Aligned_cols=19 Identities=21% Similarity=0.094 Sum_probs=8.9
Q ss_pred hhhccchHHHHHHHHHHHH
Q 026266 171 IEHQDKSTEARALISKLKD 189 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~e 189 (241)
+++-.++.++...+.++++
T Consensus 16 eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 16 EELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445455444444443
No 205
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.56 E-value=82 Score=22.07 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCCeEEEEeeecCC
Q 026266 25 SCSLQLSNKTDNYVAFKVKTTNP 47 (241)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p 47 (241)
.-.|++...+.+.|.|||+.|.+
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~ 29 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTP 29 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSC
T ss_pred eEEEEEECCCCCEEEEEECCCCH
Confidence 45677777777788888887765
No 206
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.53 E-value=1.6e+02 Score=18.58 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 176 KSTEARALISKLKDEKNNAVQQNNKLRQD 204 (241)
Q Consensus 176 k~~ea~~~i~~L~eE~~~~~~q~~~l~~e 204 (241)
|..++..++..|..+.+.|..+...|+.+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444444444433
No 207
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=21.48 E-value=1.4e+02 Score=20.28 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEK 191 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~ 191 (241)
+.+-..+|.+|++..
T Consensus 27 L~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 27 LKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334445554443
No 208
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=21.28 E-value=1.4e+02 Score=19.78 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=29.3
Q ss_pred ceEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEE
Q 026266 6 LLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIV 69 (241)
Q Consensus 6 ll~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V 69 (241)
-...+|..|.++. +. .+++.|.++..-.|-+....+.. -..+.+.||++.++.+
T Consensus 13 ~~~f~P~~i~v~~--Gd----~V~~~n~~~~~H~v~~~~~~~~~----~~~~~~~~g~~~~~~f 66 (91)
T 1bxv_A 13 MLAFEPSTIEIQA--GD----TVQWVNNKLAPHNVVVEGQPELS----HKDLAFSPGETFEATF 66 (91)
T ss_dssp CSSEESSEEEECT--TC----EEEEEECSSCCEEEEETTCGGGC----EEEEECSTTCEEEEEC
T ss_pred ccEEeCCEEEECC--CC----EEEEEECCCCCcEEEEeCCCccC----cccceeCCCCEEEEEe
Confidence 4567788777763 22 35677875433333333211111 0235788999877754
No 209
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=21.19 E-value=78 Score=29.71 Aligned_cols=17 Identities=18% Similarity=-0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026266 224 VILVGLVGIVLGYVMKK 240 (241)
Q Consensus 224 v~~v~ll~~llgy~~~~ 240 (241)
..++.|+++|..|++++
T Consensus 524 ~~~~~~~~~~~~~~~~~ 540 (546)
T 1fgj_A 524 GGGMLLAGALALIGWRK 540 (546)
T ss_dssp -----------------
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 34444555555555543
No 210
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.05 E-value=1.7e+02 Score=21.29 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=29.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026266 171 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE 211 (241)
Q Consensus 171 ~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~ 211 (241)
++|++...|+.+.|..|++|+=.+.....+-.-|+..|+.+
T Consensus 45 ~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~r 85 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNR 85 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 36777888888899999999876655555444566656544
No 211
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.01 E-value=56 Score=20.08 Aligned_cols=17 Identities=35% Similarity=0.878 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhcc
Q 026266 224 VILVGLVGIVLGYVMKK 240 (241)
Q Consensus 224 v~~v~ll~~llgy~~~~ 240 (241)
++++.+++++++.|+++
T Consensus 21 vll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheeh
Confidence 34555566666666654
No 212
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.01 E-value=1.2e+02 Score=21.20 Aligned_cols=33 Identities=24% Similarity=0.144 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~ 209 (241)
|.++..+-.+|.++......+...|++|...|+
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555666665555444
No 213
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=20.87 E-value=86 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=18.2
Q ss_pred eeEEEEEEcCCCCeEEEEeeecCC
Q 026266 24 ISCSLQLSNKTDNYVAFKVKTTNP 47 (241)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p 47 (241)
..-.|++...+.+.|.|||+.|.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~ 39 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTP 39 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSC
T ss_pred CeEEEEEECCCCCEEEEEEccCCH
Confidence 356777777777788888887765
No 214
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=20.71 E-value=88 Score=23.09 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026266 177 STEARALISKLKDEKNNAVQQ 197 (241)
Q Consensus 177 ~~ea~~~i~~L~eE~~~~~~q 197 (241)
|.++..+|..|+++...+.++
T Consensus 69 L~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 69 LKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888877766554
No 215
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=20.68 E-value=2e+02 Score=20.80 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=26.9
Q ss_pred CCCeeeEEEEEEcCCCCe--EEEEeeecCCCceEEeCC
Q 026266 20 LKKQISCSLQLSNKTDNY--VAFKVKTTNPKKYCVRPN 55 (241)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VrP~ 55 (241)
.+........|+|.+..+ +.||+-==...-+-|.|.
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~ 73 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDE 73 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCT
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC
Confidence 356678999999998876 788876666666666654
No 216
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.65 E-value=2e+02 Score=20.93 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=30.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026266 170 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG 212 (241)
Q Consensus 170 ~~~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~~~ 212 (241)
.++|+++..|+.+.|..|++|+=.+.....+-.-|+..|+.+.
T Consensus 44 ~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 44 EDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 3577888888889999999998766555554445666665543
No 217
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.63 E-value=65 Score=21.63 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026266 221 FIFVILVGLVGIVLG 235 (241)
Q Consensus 221 ~~~v~~v~ll~~llg 235 (241)
+.|++++|++|++|-
T Consensus 22 LifA~vLfi~GI~ii 36 (67)
T 2jp3_A 22 LIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 566777777777663
No 218
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.47 E-value=2.3e+02 Score=19.87 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026266 192 NNAVQQNNKLRQDLELLR 209 (241)
Q Consensus 192 ~~~~~q~~~l~~el~~l~ 209 (241)
..|.+||+.|..++..++
T Consensus 26 R~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555554444443
No 219
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.25 E-value=2e+02 Score=21.27 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=16.7
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE 206 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~ 206 (241)
++.+++.+.......|..++..+.++...|+.+++
T Consensus 87 el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 87 EMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455544444444444444443
No 220
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.23 E-value=89 Score=28.20 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=23.3
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 172 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR 210 (241)
Q Consensus 172 ~l~~k~~ea~~~i~~L~eE~~~~~~q~~~l~~el~~l~~ 210 (241)
+++.++.+..+.+.+|+.+++.+.++.+.+++|+..++.
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 29 ETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444455555666777776666666666677665543
No 221
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=20.22 E-value=1.2e+02 Score=21.51 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=20.4
Q ss_pred CCeeeEEEEEEcCCC-CeEEEEeeecCC
Q 026266 21 KKQISCSLQLSNKTD-NYVAFKVKTTNP 47 (241)
Q Consensus 21 ~~~~~~~l~L~N~s~-~~vaFKVKTT~p 47 (241)
.....-.|++..... ..+-||||.|.|
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~ 48 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSP 48 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSC
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCCh
Confidence 344567888888766 489999998776
No 222
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=20.19 E-value=77 Score=18.52 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 026266 223 FVILVGLVGIVLGYVMKK 240 (241)
Q Consensus 223 ~v~~v~ll~~llgy~~~~ 240 (241)
++..+.|+|+.+||++-|
T Consensus 11 i~~~LvLvGla~Gf~LLk 28 (35)
T 1vf5_F 11 LSFGLIFVGWGLGVLLLK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 456667788889988754
No 223
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.14 E-value=67 Score=21.80 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 026266 221 FIFVILVGLVGIVL 234 (241)
Q Consensus 221 ~~~v~~v~ll~~ll 234 (241)
+.|++++|++|++|
T Consensus 21 LifA~vLfi~GI~i 34 (72)
T 2jo1_A 21 LVIAGILFILGILI 34 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55666666666665
No 224
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.12 E-value=1.3e+02 Score=19.35 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026266 174 QDKSTEARALISKLKDEKNNAVQQNNKL 201 (241)
Q Consensus 174 ~~k~~ea~~~i~~L~eE~~~~~~q~~~l 201 (241)
+.++.++++++..++.+.....++.+.|
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~L 33 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDL 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666655555554433
Done!