Query 026269
Match_columns 241
No_of_seqs 130 out of 395
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 83.5 15 0.00053 29.2 10.8 71 110-191 9-79 (142)
2 4i95_A Putative uncharacterize 73.0 20 0.00069 28.5 8.4 70 111-191 10-79 (142)
3 1qbj_A Protein (double-strande 44.2 45 0.0015 23.5 5.3 55 64-122 8-72 (81)
4 3g5o_B Uncharacterized protein 36.3 29 0.00098 25.2 3.3 19 85-104 34-53 (102)
5 3oei_C RELK (toxin RV3358); to 35.0 32 0.0011 25.3 3.3 34 85-120 32-71 (96)
6 1qgp_A Protein (double strande 31.8 69 0.0024 22.1 4.5 52 65-120 13-74 (77)
7 3uc2_A Hypothetical protein wi 28.9 74 0.0025 25.1 4.7 68 113-192 24-92 (139)
8 1qwd_A Outer membrane lipoprot 26.8 2.3E+02 0.0078 22.2 10.5 31 209-239 113-146 (177)
9 1z8m_A Conserved hypothetical 23.8 46 0.0016 22.7 2.4 15 90-104 25-39 (88)
10 2ia9_A Putative septation prot 22.0 69 0.0024 23.8 3.1 28 206-235 18-50 (100)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=83.49 E-value=15 Score=29.22 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=45.6
Q ss_pred CCCcceeeEEEEecCCCCCCCCCCCccccceeecceeEEEEcCCCeEEEEEEeccCCceeEEEEEEEEEEEcCCcEEEEE
Q 026269 110 CPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVV 189 (241)
Q Consensus 110 s~lL~G~W~LvyTs~~~~~~g~~r~~~G~~~~~~g~v~Q~Id~~~~v~N~v~~~~~~~l~g~v~v~a~~~~~~~~rv~V~ 189 (241)
..-|.|-|++++-.+.....+. -...+.++-+|..++++.|++-...- ...+...|+++..++....-.
T Consensus 9 ~~~L~GvWQ~c~y~~~~~~~~~--------~l~~s~~~KIlS~DgtF~N~~m~~~~---~aiIt~yGtY~l~SD~~Y~E~ 77 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESPDVPG--------ALKPSNTFKVLSDDGRIVNFTIIPGA---DAIITGYGTYKQLTDDSYKES 77 (142)
T ss_dssp SCCCCEEEEEEEEEESSTTSCC--------EEEEEEEEEEECTTSEEEEEECCTTS---CCEEEEEEEEEEEETTEEEEE
T ss_pred cccceEEeEEeeEeecCCCCCc--------eEeecCceEEECCCCcEEEEEEeCCC---CcEEEEeEEEEecCCCeeeee
Confidence 3469999998854444321111 23346678899999899999854422 334567889988777654444
Q ss_pred Ee
Q 026269 190 FE 191 (241)
Q Consensus 190 Fe 191 (241)
.+
T Consensus 78 i~ 79 (142)
T 4gzv_A 78 IE 79 (142)
T ss_dssp EE
T ss_pred ec
Confidence 33
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=72.96 E-value=20 Score=28.45 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCcceeeEEEEecCCCCCCCCCCCccccceeecceeEEEEcCCCeEEEEEEeccCCceeEEEEEEEEEEEcCCcEEEEEE
Q 026269 111 PLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVF 190 (241)
Q Consensus 111 ~lL~G~W~LvyTs~~~~~~g~~r~~~G~~~~~~g~v~Q~Id~~~~v~N~v~~~~~~~l~g~v~v~a~~~~~~~~rv~V~F 190 (241)
..|.|.|+++.-.+.... . + ..+.-+..+-++..++++.|++-... -.+.+...|+++..++....-..
T Consensus 10 ~~L~GvWQ~C~y~s~~pd--~-~-----g~L~psn~lKIlSdDgtF~Ni~m~~~---~~aiIt~~GtY~~~SD~~Y~E~I 78 (142)
T 4i95_A 10 AHLQGIWQLCHYVSENPD--I-P-----GVLKPSNTFKVLSDDGRIVNFTIRPG---TDAIITGYGTYRQISAAAYKESI 78 (142)
T ss_dssp CSCCEEEEEEEEECSSTT--S-C-----CEEEEEEEEEEECTTSEEEEEECCTT---SCCEEEEEEEEEEEETTEEEEEE
T ss_pred ccceeEeEEEEEecCCCC--C-c-----eEeccCccEEEEcCCCcEEEEEEecC---CCcEEEEeEEEEecCCcceeeee
Confidence 369999999987666541 1 1 12344668889999889999986642 23445667888876655444333
Q ss_pred e
Q 026269 191 E 191 (241)
Q Consensus 191 e 191 (241)
+
T Consensus 79 e 79 (142)
T 4i95_A 79 E 79 (142)
T ss_dssp E
T ss_pred c
Confidence 3
No 3
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=44.21 E-value=45 Score=23.51 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhhccCCCccCCHhh--------HHHHHHHHHHHHHhCC--CCCCCCCCcceeeEEEEe
Q 026269 64 PDDLVASILSKVNQSDGGVSLAKEE--------HKEVAEVAQELQKYCV--EAPVKCPLIFGEWDVVYC 122 (241)
Q Consensus 64 ~~~lK~~LL~aia~t~rG~~as~~~--------r~~I~~li~~LE~~np--~~P~~s~lL~G~W~LvyT 122 (241)
.++..++||+++....-|..++..+ +..|...+..||+.+- ..+ ..+ |.|.+.-.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~---~~W~i~~~ 72 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTP---PLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES-SSS---CEEEEC--
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCC---CeeEEeCc
Confidence 4677888999998655444444322 6789999999999885 222 222 89988643
No 4
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=36.34 E-value=29 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=14.1
Q ss_pred CHhhHHHHHHHH-HHHHHhCC
Q 026269 85 AKEEHKEVAEVA-QELQKYCV 104 (241)
Q Consensus 85 s~~~r~~I~~li-~~LE~~np 104 (241)
++..++.|.+.| ++|+ .||
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~P 53 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-REP 53 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HCT
T ss_pred CHHHHHHHHHHHHHHHH-hCc
Confidence 456778898888 7774 566
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=34.97 E-value=32 Score=25.28 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=21.5
Q ss_pred CHhhHHHHHHHHHHHHHhCCC------CCCCCCCcceeeEEE
Q 026269 85 AKEEHKEVAEVAQELQKYCVE------APVKCPLIFGEWDVV 120 (241)
Q Consensus 85 s~~~r~~I~~li~~LE~~np~------~P~~s~lL~G~W~Lv 120 (241)
++..++.|.++|++|+ .||- +|++. .+.|.|+..
T Consensus 32 dk~~~krI~~~I~~l~-~nP~~g~gK~e~Lkg-~l~g~~s~R 71 (96)
T 3oei_C 32 DRKTARRITRLIGEIQ-RDPFSGIGKPEPLQG-ELSGYWSRR 71 (96)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTSSTTCCEECCG-GGTTCEEEE
T ss_pred CHHHHHHHHHHHHHHH-hCCCcCCCchhhcCC-CCCCcEEEE
Confidence 4566889999999987 4662 23332 256666644
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=31.78 E-value=69 Score=22.07 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhccCCCccCCHhh--------HHHHHHHHHHHHHhCC--CCCCCCCCcceeeEEE
Q 026269 65 DDLVASILSKVNQSDGGVSLAKEE--------HKEVAEVAQELQKYCV--EAPVKCPLIFGEWDVV 120 (241)
Q Consensus 65 ~~lK~~LL~aia~t~rG~~as~~~--------r~~I~~li~~LE~~np--~~P~~s~lL~G~W~Lv 120 (241)
.+..+++|.++.....|...+..+ +..|...+..||..+- ... ..+ |.|++.
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g-~~~---~~W~i~ 74 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTP---PLWKIA 74 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC-SSS---CEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCC---CceEec
Confidence 345678888887665443333222 6789999999999885 222 223 889864
No 7
>3uc2_A Hypothetical protein with immunoglobulin-like FOL; structural genomics, joint center for structural genomics; 2.09A {Pseudomonas aeruginosa}
Probab=28.87 E-value=74 Score=25.13 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=44.1
Q ss_pred cceeeEEEEecCCCCCCCCCCCccccceeecceeEEEEcCCC-eEEEEEEeccCCceeEEEEEEEEEEEcCCcEEEEEEe
Q 026269 113 IFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPD-TVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFE 191 (241)
Q Consensus 113 L~G~W~LvyTs~~~~~~g~~r~~~G~~~~~~g~v~Q~Id~~~-~v~N~v~~~~~~~l~g~v~v~a~~~~~~~~rv~V~Fe 191 (241)
-.|.|++-|+.-+++.+.. .+.+.|++..... -+.|+..+.. +- +..+.|+|....+.+....+.|.
T Consensus 24 ~~Gd~~VHYsafnSTFLtP----------eVA~~Y~I~RSk~~gllNISVl~~-g~-pv~a~vsG~a~NL~gq~~~L~Fr 91 (139)
T 3uc2_A 24 RFGDLDVHYNVFNSSFLQP----------NVASAVGLVRSKAQGVINVVPMEK-GK-PVEAAVTGSAKDLTGKVIPLEFR 91 (139)
T ss_dssp EETTEEEEEEEEEGGGSCH----------HHHHHTTCCCCTTEEEEEEEEEET-TE-ECCEEEEEEEECTTCCEEEECCE
T ss_pred EcCCEEEEEEEcccccCCH----------HHHHHcCccccCCeEEEEEEEecC-CC-eEEEEEEEEEECCcCCeEEeeEE
Confidence 4699999998666542111 2334455555555 4677766664 21 23457788888888999999998
Q ss_pred C
Q 026269 192 P 192 (241)
Q Consensus 192 ~ 192 (241)
+
T Consensus 92 e 92 (139)
T 3uc2_A 92 R 92 (139)
T ss_dssp E
T ss_pred E
Confidence 7
No 8
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=26.84 E-value=2.3e+02 Score=22.19 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=22.9
Q ss_pred eeEEEEEEecCCeE---EEeCCCCcEEEEEeccC
Q 026269 209 EVKLQITYIDEKIR---LGLGSRGSLFVFQRRTQ 239 (241)
Q Consensus 209 ~g~ld~TYLDe~lR---IsRG~~G~lFVl~R~~~ 239 (241)
.+-+.+.++|++-+ ++..++..++||.|..+
T Consensus 113 ~~~y~Vl~tD~~Ya~~~v~~~~~~~~wILsR~p~ 146 (177)
T 1qwd_A 113 YGGYNVIALDREYRHALVCGPDRDYLWILSRTPT 146 (177)
T ss_dssp EEEEEEEEEBTTSSEEEEECSSTTCEEEEESSSS
T ss_pred cceEEEEEECCCeeEEEEecCCCcEEEEEECCCC
Confidence 46677999998833 34446778999999864
No 9
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=23.81 E-value=46 Score=22.70 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhCC
Q 026269 90 KEVAEVAQELQKYCV 104 (241)
Q Consensus 90 ~~I~~li~~LE~~np 104 (241)
+.+.++++.|...||
T Consensus 25 ~~~~~~i~~l~~~~p 39 (88)
T 1z8m_A 25 SVLNEVILTLRKKEP 39 (88)
T ss_dssp HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCC
Confidence 568888888865466
No 10
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.03 E-value=69 Score=23.85 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=20.2
Q ss_pred CcceeEEEEEEecC-----CeEEEeCCCCcEEEEE
Q 026269 206 GQSEVKLQITYIDE-----KIRLGLGSRGSLFVFQ 235 (241)
Q Consensus 206 ~~~~g~ld~TYLDe-----~lRIsRG~~G~lFVl~ 235 (241)
+.=++.-.+|+ |+ ++||.-|.+| +||-.
T Consensus 18 gklkA~aSVt~-dd~fvI~dIkVieg~~G-lFVaM 50 (100)
T 2ia9_A 18 GRMRAIASITL-DHEFVVHDIRVIDGNNG-LFVAM 50 (100)
T ss_dssp SSEEEEEEEEE-TTTEEEEEEEEEEETTE-EEEEC
T ss_pred CCEEEEEEEEE-CCEEEEeeEEEEECCCc-eEEEC
Confidence 34467666665 55 8899999887 99864
Done!