Query 026269
Match_columns 241
No_of_seqs 130 out of 395
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 09:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026269.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026269hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 34.9 16 0.0011 31.8 4.2 41 82-122 22-74 (427)
2 d2gyc31 a.108.1.1 (3:2-48) Rib 29.4 30 0.0022 20.8 3.5 26 68-102 3-28 (47)
3 d2a6sa1 d.298.1.1 (A:1-83) Tox 22.1 29 0.0021 23.2 2.8 45 65-118 7-57 (83)
4 d1ztwa1 e.8.1.2 (A:24-278) MML 21.8 35 0.0026 26.8 3.8 40 82-121 41-90 (255)
5 d2gu3a1 d.17.1.6 (A:99-161) Un 21.3 23 0.0016 22.7 2.0 17 208-224 30-46 (63)
6 d1hara_ e.8.1.2 (A:) HIV-1 rev 19.6 42 0.003 26.0 3.7 23 82-104 24-46 (216)
7 d2zd1b1 e.8.1.2 (B:5-428) HIV- 14.5 58 0.0042 27.9 3.6 39 83-121 21-71 (424)
8 d1z8ma1 d.298.1.2 (A:1-88) Hyp 13.8 25 0.0018 23.6 0.7 29 89-117 24-53 (88)
9 d1qpza1 a.35.1.5 (A:2-58) Puri 13.2 61 0.0044 19.8 2.5 18 83-100 26-43 (57)
10 d2gxba1 a.4.5.19 (A:140-198) Z 12.7 1.6E+02 0.011 18.2 5.1 43 69-111 2-54 (59)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=34.93 E-value=16 Score=31.82 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=27.9
Q ss_pred ccCCHhhHHHHHHHHHHHHHhCC------CCCCCCCCc------ceeeEEEEe
Q 026269 82 VSLAKEEHKEVAEVAQELQKYCV------EAPVKCPLI------FGEWDVVYC 122 (241)
Q Consensus 82 ~~as~~~r~~I~~li~~LE~~np------~~P~~s~lL------~G~W~LvyT 122 (241)
...++++++++.++|++|++.+- ..|-.+|.+ .|+||++--
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 35789999999999999999973 244455532 489999853
No 2
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=29.40 E-value=30 Score=20.76 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=20.7
Q ss_pred HHHHHHhhhccCCCccCCHhhHHHHHHHHHHHHHh
Q 026269 68 VASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKY 102 (241)
Q Consensus 68 K~~LL~aia~t~rG~~as~~~r~~I~~li~~LE~~ 102 (241)
|+++|++|+... --+|-+||..+|..
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEK 28 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEK 28 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHH
Confidence 789999998642 45788999999875
No 3
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=22.06 E-value=29 Score=23.16 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhccCCCccCCHhhHHHHHHHHHHHHHhCC------CCCCCCCCcceeeE
Q 026269 65 DDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCV------EAPVKCPLIFGEWD 118 (241)
Q Consensus 65 ~~lK~~LL~aia~t~rG~~as~~~r~~I~~li~~LE~~np------~~P~~s~lL~G~W~ 118 (241)
+++.+++..... .++...+.|.++++++.+ +| |+|++- .+.|-|.
T Consensus 7 ~~A~~d~~~~~~-------~d~k~~kkI~~ll~~i~~-~p~~g~gkpE~Lkg-~l~g~wS 57 (83)
T d2a6sa1 7 EESWDDYLYWQE-------TDKRIVKKINELIKDTRR-TPFEGKGKPEPLKH-NLSGFWS 57 (83)
T ss_dssp HHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHH-STTSSTTCCEECCG-GGTTCEE
T ss_pred HHHHHHHHHHHH-------hCHHHHHHHHHHHHHHHh-CcCCCCCCCccccC-CCCCEEE
Confidence 345556655542 246677899999999975 44 455543 4777773
No 4
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=21.78 E-value=35 Score=26.82 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=29.7
Q ss_pred ccCCHhhHHHHHHHHHHHHHhCC----CCCCCCCCc------ceeeEEEE
Q 026269 82 VSLAKEEHKEVAEVAQELQKYCV----EAPVKCPLI------FGEWDVVY 121 (241)
Q Consensus 82 ~~as~~~r~~I~~li~~LE~~np----~~P~~s~lL------~G~W~Lvy 121 (241)
...++++++++.+.|++|.+.+- ..|-.+|.+ .|+||++.
T Consensus 41 ~~~~~~~~~~l~~~i~~ll~~G~I~p~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 41 YPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEEECCSCBCCEEECCSSSSCCCCEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhhceeeecCCCcccccccccccccceEEEee
Confidence 44678999999999999999873 455555521 37888886
No 5
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=21.30 E-value=23 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=12.5
Q ss_pred ceeEEEEEEecCCeEEE
Q 026269 208 SEVKLQITYIDEKIRLG 224 (241)
Q Consensus 208 ~~g~ld~TYLDe~lRIs 224 (241)
..-.||+||+|++=|.+
T Consensus 30 ~~pvWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 30 NVLLWEVTYLDKEGQYS 46 (63)
T ss_dssp TEEEEEEEEECTTSCEE
T ss_pred CEEEEEEEEEeCCCCEE
Confidence 34457999999876655
No 6
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=19.57 E-value=42 Score=26.04 Aligned_cols=23 Identities=13% Similarity=0.162 Sum_probs=19.7
Q ss_pred ccCCHhhHHHHHHHHHHHHHhCC
Q 026269 82 VSLAKEEHKEVAEVAQELQKYCV 104 (241)
Q Consensus 82 ~~as~~~r~~I~~li~~LE~~np 104 (241)
...+++++++|.+.+++|++.+-
T Consensus 24 ypl~~~~~~~l~~~i~~ll~~G~ 46 (216)
T d1hara_ 24 WPLTAAKIAALVAICTEMEKEGK 46 (216)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHHCCc
Confidence 34678999999999999999974
No 7
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=14.45 E-value=58 Score=27.90 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=29.3
Q ss_pred cCCHhhHHHHHHHHHHHHHhCC------CCCCCCCC-----cce-eeEEEE
Q 026269 83 SLAKEEHKEVAEVAQELQKYCV------EAPVKCPL-----IFG-EWDVVY 121 (241)
Q Consensus 83 ~as~~~r~~I~~li~~LE~~np------~~P~~s~l-----L~G-~W~Lvy 121 (241)
..++++.+++.+.|++|++.+- ..|-.+|. =+| +||++-
T Consensus 21 pLs~ek~~al~~~i~~ll~~G~I~~~~s~Sp~~sPvf~V~KKdg~k~R~~i 71 (424)
T d2zd1b1 21 PLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLV 71 (424)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSEEECCTTCCCBBCEEEECCTTCSSCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCeeEecCCCCCCcCCeEEEEeCCCCceEEEE
Confidence 4789999999999999999984 24445552 235 699984
No 8
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=13.83 E-value=25 Score=23.56 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCcceee
Q 026269 89 HKEVAEVAQELQKYCV-EAPVKCPLIFGEW 117 (241)
Q Consensus 89 r~~I~~li~~LE~~np-~~P~~s~lL~G~W 117 (241)
..++.++|..|...+| +.-...-.|.|+|
T Consensus 24 ~~~~~~~i~~L~~~~pl~~~~~dH~L~G~~ 53 (88)
T d1z8ma1 24 DSVLNEVILTLRKKEPLDPQFQDHALKGKW 53 (88)
T ss_dssp HHHHHHHHHHHTTSCCCCGGGCCEECSGGG
T ss_pred HHHHHHHHHHHHcCCCCCccccCccccCcc
Confidence 4678888888877677 4434433444544
No 9
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.24 E-value=61 Score=19.85 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.7
Q ss_pred cCCHhhHHHHHHHHHHHH
Q 026269 83 SLAKEEHKEVAEVAQELQ 100 (241)
Q Consensus 83 ~as~~~r~~I~~li~~LE 100 (241)
..+++.|+.|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 468999999999999884
No 10
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.75 E-value=1.6e+02 Score=18.25 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=29.1
Q ss_pred HHHHHhhhccCCCccCCHhh--------HHHHHHHHHHHHHhCC--CCCCCCC
Q 026269 69 ASILSKVNQSDGGVSLAKEE--------HKEVAEVAQELQKYCV--EAPVKCP 111 (241)
Q Consensus 69 ~~LL~aia~t~rG~~as~~~--------r~~I~~li~~LE~~np--~~P~~s~ 111 (241)
+++|..+.+.+-|...+..+ +.+|+.++..||..+- .+..+.|
T Consensus 2 q~vl~~l~~lg~~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~gtPP 54 (59)
T d2gxba1 2 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPP 54 (59)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred hHHHHHHHhcCCccchhHHHHHHHhCCcHHHHHHHHHHHHHccchhhcCCCCC
Confidence 45666666666666655443 7899999999999874 3443434
Done!