BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026274
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 45 EEYGLF---VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101
+E+ L+ VW + LA+ + Q +G V ELGAG L +VA G++ + D
Sbjct: 51 QEHPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDY 110
Query: 102 NRIEVL----KNMRR----VCE---MNKLNCRVMGLTWGFLDASIFDLNP----NIILGA 146
E+L N+R C + + + +V+ WG S+ ++L A
Sbjct: 111 PDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLA 170
Query: 147 DVFYDASAFDDLFATITYLL---QSSPGSVFITTY-HNRSGHHLIE 188
D+ A D L ++ LL + P +V + T+ H+R HL E
Sbjct: 171 DLLSFHQAHDALLRSVKXLLALPANDPTAVALVTFTHHRP--HLAE 214
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
++++Q + F V+++G GT + + AAK G+ + D + E+L + +NKL
Sbjct: 35 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQS--EILYQAMDIIRLNKL 92
Query: 120 N 120
Sbjct: 93 E 93
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
++++Q + F V+++G GT + + AAK G+ L D + E+L + +NKL
Sbjct: 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS--EILYQAMDIIRLNKL 111
>pdb|3ETS|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With 4-
Methylumbelliferone Bound In The Active Site
pdb|3ETS|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With 4-
Methylumbelliferone Bound In The Active Site
pdb|3ETT|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With
4-Nitrophenol Bound In The Active Site
pdb|3ETT|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase Catalytic Intermediate With
4-Nitrophenol Bound In The Active Site
Length = 571
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203
L D FYD D ++ +P F G H EF M+ L+ KL
Sbjct: 190 LDQDTFYDGRDRDINKRGYLMGIRETPRGTFTAV----QGQHWYEFDMMGQVLEDHKLPR 245
Query: 204 GFSFLPHYKARELNGNIQLAEIVLNHESPEETSTSTVR 241
GF+ H NG + L N+ + +T+R
Sbjct: 246 GFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIR 283
>pdb|3ELQ|A Chain A, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase
pdb|3ELQ|B Chain B, Crystal Structure Of A Bacterial Arylsulfate
Sulfotransferase
Length = 571
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203
L D FYD D ++ +P F G H EF M+ L+ KL
Sbjct: 190 LDQDTFYDGRDRDINKRGYLMGIRETPRGTFTAV----QGQHWYEFDMMGQVLEDHKLPR 245
Query: 204 GFSFLPHYKARELNGNIQLAEIVLNHESPEETSTSTVR 241
GF+ H NG + L N+ + +T+R
Sbjct: 246 GFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIR 283
>pdb|3EVZ|A Chain A, Crystal Strucure Of Methyltransferase From Pyrococcus
Furiosus
Length = 230
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVL 107
GL P S Y++ + + G +E+G G + + A+ N +T E
Sbjct: 37 GLVTTPIS----RYIFLKTFLRGGEVALEIGTGHTAXXALXAEKFFNCKVTATEVDEEFF 92
Query: 108 KNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151
+ RR E N N R++ G + + + ++I A +YD
Sbjct: 93 EYARRNIERNNSNVRLVKSNGGIIKG-VVEGTFDVIFSAPPYYD 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,251,126
Number of Sequences: 62578
Number of extensions: 284057
Number of successful extensions: 712
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 6
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)