Query 026274
Match_columns 241
No_of_seqs 212 out of 2157
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 9.9E-29 2.2E-33 200.2 13.5 144 35-183 4-161 (173)
2 COG2264 PrmA Ribosomal protein 99.8 9.9E-18 2.1E-22 144.9 16.2 159 33-203 129-288 (300)
3 COG3897 Predicted methyltransf 99.8 1E-18 2.2E-23 140.7 7.6 162 13-183 20-184 (218)
4 KOG3201 Uncharacterized conser 99.8 4.3E-19 9.3E-24 138.6 5.3 150 47-201 5-164 (201)
5 PF06325 PrmA: Ribosomal prote 99.8 1.6E-17 3.6E-22 144.5 15.3 153 33-201 128-281 (295)
6 COG2227 UbiG 2-polyprenyl-3-me 99.7 4.2E-17 9.1E-22 135.9 9.5 113 69-187 58-170 (243)
7 COG4123 Predicted O-methyltran 99.7 1E-15 2.3E-20 129.2 16.6 170 46-230 24-215 (248)
8 KOG2793 Putative N2,N2-dimethy 99.7 5.7E-16 1.2E-20 130.8 14.2 144 35-183 40-204 (248)
9 PF05175 MTS: Methyltransferas 99.7 1.5E-15 3.3E-20 122.6 15.9 130 53-195 18-155 (170)
10 TIGR00537 hemK_rel_arch HemK-r 99.7 4E-15 8.8E-20 120.9 16.8 137 55-203 8-165 (179)
11 PLN02396 hexaprenyldihydroxybe 99.7 5.8E-15 1.3E-19 130.3 16.6 137 69-212 130-297 (322)
12 PRK00107 gidB 16S rRNA methylt 99.6 2E-13 4.3E-18 111.9 18.8 139 70-227 45-186 (187)
13 PRK11036 putative S-adenosyl-L 99.6 3.9E-14 8.4E-19 121.4 15.3 104 70-178 44-149 (255)
14 PRK00517 prmA ribosomal protei 99.6 9.5E-14 2.1E-18 118.8 17.2 150 33-201 86-236 (250)
15 PF12847 Methyltransf_18: Meth 99.6 1.1E-14 2.4E-19 108.6 10.1 103 70-178 1-111 (112)
16 KOG1270 Methyltransferases [Co 99.6 3.6E-15 7.9E-20 125.3 7.9 108 70-181 89-198 (282)
17 TIGR00406 prmA ribosomal prote 99.6 1.1E-13 2.4E-18 120.7 17.6 155 33-201 126-281 (288)
18 PF13847 Methyltransf_31: Meth 99.6 2.8E-14 6E-19 112.8 12.5 106 70-180 3-112 (152)
19 PRK14968 putative methyltransf 99.6 2.5E-13 5.4E-18 110.4 18.4 141 50-201 7-171 (188)
20 PRK14967 putative methyltransf 99.6 1.8E-13 3.9E-18 115.1 17.2 140 54-201 21-182 (223)
21 TIGR00477 tehB tellurite resis 99.6 6.3E-14 1.4E-18 115.6 13.0 101 69-176 29-132 (195)
22 PLN02244 tocopherol O-methyltr 99.5 5E-13 1.1E-17 119.3 18.7 102 69-176 117-221 (340)
23 PRK11207 tellurite resistance 99.5 1.2E-13 2.5E-18 114.1 13.1 98 69-173 29-129 (197)
24 PRK15068 tRNA mo(5)U34 methylt 99.5 4.4E-13 9.5E-18 118.7 17.3 146 50-203 103-274 (322)
25 COG2263 Predicted RNA methylas 99.5 1.6E-12 3.5E-17 104.7 18.7 150 65-227 40-196 (198)
26 PF08241 Methyltransf_11: Meth 99.5 5.8E-14 1.3E-18 101.0 8.6 94 75-176 1-95 (95)
27 TIGR00452 methyltransferase, p 99.5 8.1E-13 1.8E-17 116.3 16.9 148 51-206 103-276 (314)
28 PRK12335 tellurite resistance 99.5 1.1E-12 2.4E-17 114.4 17.1 98 69-173 119-218 (287)
29 PLN02336 phosphoethanolamine N 99.5 1.3E-12 2.8E-17 121.5 18.5 104 68-177 264-368 (475)
30 PF13489 Methyltransf_23: Meth 99.5 1.2E-13 2.7E-18 109.0 9.7 100 68-182 20-119 (161)
31 PRK15001 SAM-dependent 23S rib 99.5 1.7E-12 3.6E-17 116.8 18.1 115 53-178 215-340 (378)
32 PRK13168 rumA 23S rRNA m(5)U19 99.5 7.5E-13 1.6E-17 122.0 16.2 150 55-213 282-436 (443)
33 TIGR00138 gidB 16S rRNA methyl 99.5 1.1E-12 2.3E-17 107.0 14.5 121 69-201 41-167 (181)
34 PRK05134 bifunctional 3-demeth 99.5 1.6E-12 3.4E-17 109.7 16.1 117 57-178 35-151 (233)
35 PF03848 TehB: Tellurite resis 99.5 5E-13 1.1E-17 109.4 11.9 103 67-176 27-131 (192)
36 PTZ00098 phosphoethanolamine N 99.5 1.9E-12 4.1E-17 111.6 15.7 118 53-177 35-155 (263)
37 PRK03522 rumB 23S rRNA methylu 99.5 1.5E-12 3.2E-17 115.0 15.3 134 69-213 172-308 (315)
38 TIGR03704 PrmC_rel_meth putati 99.5 3.6E-12 7.8E-17 109.1 16.5 141 54-201 69-238 (251)
39 PRK14966 unknown domain/N5-glu 99.5 5E-12 1.1E-16 114.3 18.0 141 53-201 236-403 (423)
40 PLN02233 ubiquinone biosynthes 99.5 6.1E-12 1.3E-16 108.3 17.5 102 68-175 71-179 (261)
41 COG2890 HemK Methylase of poly 99.5 4.7E-12 1E-16 110.0 16.8 139 53-201 94-261 (280)
42 TIGR01983 UbiG ubiquinone bios 99.4 4.5E-12 9.8E-17 106.1 15.9 121 52-177 23-148 (224)
43 TIGR02085 meth_trns_rumB 23S r 99.4 2.2E-12 4.7E-17 116.5 14.8 134 69-213 232-368 (374)
44 PRK08287 cobalt-precorrin-6Y C 99.4 2.4E-11 5.1E-16 99.4 19.5 123 68-201 29-154 (187)
45 COG2813 RsmC 16S RNA G1207 met 99.4 9.4E-12 2E-16 107.5 17.7 132 59-201 147-286 (300)
46 PRK10258 biotin biosynthesis p 99.4 3.2E-12 6.8E-17 109.2 14.7 99 70-178 42-140 (251)
47 TIGR02021 BchM-ChlM magnesium 99.4 6.9E-12 1.5E-16 105.0 15.6 100 68-176 53-156 (219)
48 PLN02585 magnesium protoporphy 99.4 8.2E-12 1.8E-16 110.0 16.5 97 69-175 143-247 (315)
49 TIGR02752 MenG_heptapren 2-hep 99.4 1.5E-11 3.2E-16 103.6 17.4 104 68-177 43-150 (231)
50 PRK00121 trmB tRNA (guanine-N( 99.4 1.8E-12 3.8E-17 107.5 11.4 127 70-200 40-178 (202)
51 PF02353 CMAS: Mycolic acid cy 99.4 7.9E-12 1.7E-16 108.2 15.0 115 54-177 46-165 (273)
52 COG2230 Cfa Cyclopropane fatty 99.4 3.5E-12 7.7E-17 109.7 12.7 109 53-168 55-168 (283)
53 TIGR00536 hemK_fam HemK family 99.4 1.5E-11 3.2E-16 107.2 16.6 142 53-201 96-267 (284)
54 PF01209 Ubie_methyltran: ubiE 99.4 5.1E-12 1.1E-16 107.0 13.2 123 47-181 29-157 (233)
55 TIGR03534 RF_mod_PrmC protein- 99.4 2.1E-11 4.5E-16 103.7 16.5 144 51-203 69-241 (251)
56 PF08242 Methyltransf_12: Meth 99.4 1.1E-13 2.4E-18 101.4 2.1 96 75-174 1-99 (99)
57 PRK00377 cbiT cobalt-precorrin 99.4 4.4E-11 9.5E-16 98.8 17.9 127 67-201 37-168 (198)
58 COG2226 UbiE Methylase involve 99.4 7.1E-12 1.5E-16 105.8 13.3 122 47-180 33-159 (238)
59 smart00828 PKS_MT Methyltransf 99.4 1.4E-11 3.1E-16 103.2 14.9 124 72-202 1-143 (224)
60 PRK11873 arsM arsenite S-adeno 99.4 2.2E-11 4.7E-16 105.2 16.3 103 68-176 75-181 (272)
61 PRK14103 trans-aconitate 2-met 99.4 5.9E-12 1.3E-16 107.9 12.4 97 68-177 27-125 (255)
62 PRK09489 rsmC 16S ribosomal RN 99.4 8.9E-12 1.9E-16 111.1 13.6 98 71-176 197-301 (342)
63 PRK01683 trans-aconitate 2-met 99.4 1.3E-11 2.8E-16 105.7 13.9 100 68-178 29-130 (258)
64 PF08003 Methyltransf_9: Prote 99.4 3.7E-11 8E-16 103.8 16.3 149 50-204 96-268 (315)
65 PF13659 Methyltransf_26: Meth 99.4 3.4E-12 7.4E-17 95.9 8.8 103 71-177 1-114 (117)
66 COG4976 Predicted methyltransf 99.4 6.6E-13 1.4E-17 109.7 5.1 125 71-203 126-265 (287)
67 KOG3191 Predicted N6-DNA-methy 99.4 3.6E-11 7.9E-16 96.1 14.8 159 53-227 23-208 (209)
68 TIGR03533 L3_gln_methyl protei 99.4 5.5E-11 1.2E-15 103.6 17.4 122 70-200 121-271 (284)
69 PRK09328 N5-glutamine S-adenos 99.4 5.3E-11 1.1E-15 102.7 17.2 142 52-201 90-260 (275)
70 TIGR00479 rumA 23S rRNA (uraci 99.4 1.4E-11 3E-16 113.3 14.1 150 55-212 277-431 (431)
71 PRK11783 rlmL 23S rRNA m(2)G24 99.4 2.4E-11 5.3E-16 117.8 16.3 129 69-203 537-680 (702)
72 PRK08317 hypothetical protein; 99.4 2.8E-11 6E-16 101.5 14.7 118 53-176 2-122 (241)
73 PRK00216 ubiE ubiquinone/menaq 99.4 8.2E-11 1.8E-15 98.9 17.5 101 70-176 51-156 (239)
74 PRK05031 tRNA (uracil-5-)-meth 99.3 1.8E-11 3.9E-16 110.1 13.2 148 54-213 191-355 (362)
75 PLN02490 MPBQ/MSBQ methyltrans 99.3 2.7E-10 5.8E-15 101.3 20.2 126 70-203 113-256 (340)
76 PRK10909 rsmD 16S rRNA m(2)G96 99.3 3.2E-11 6.9E-16 99.7 12.6 108 69-182 52-163 (199)
77 PRK01544 bifunctional N5-gluta 99.3 9E-11 2E-15 109.8 17.0 124 71-202 139-292 (506)
78 TIGR02469 CbiT precorrin-6Y C5 99.3 1.5E-10 3.2E-15 87.4 15.1 109 62-178 11-122 (124)
79 TIGR03587 Pse_Me-ase pseudamin 99.3 5.2E-11 1.1E-15 98.9 13.3 98 69-178 42-143 (204)
80 PLN02672 methionine S-methyltr 99.3 7.5E-11 1.6E-15 117.4 16.6 147 53-204 100-304 (1082)
81 TIGR02072 BioC biotin biosynth 99.3 7.5E-11 1.6E-15 99.0 14.3 100 69-177 33-134 (240)
82 PRK11705 cyclopropane fatty ac 99.3 4E-11 8.6E-16 108.6 13.5 106 61-177 158-266 (383)
83 PRK07580 Mg-protoporphyrin IX 99.3 6.3E-11 1.4E-15 99.5 13.8 91 69-166 62-156 (230)
84 PRK11805 N5-glutamine S-adenos 99.3 2.6E-10 5.5E-15 100.4 17.4 120 72-200 135-283 (307)
85 TIGR02143 trmA_only tRNA (urac 99.3 5E-11 1.1E-15 106.9 12.7 146 56-213 184-346 (353)
86 PF05401 NodS: Nodulation prot 99.3 1.9E-11 4.2E-16 99.5 9.0 100 72-179 45-147 (201)
87 TIGR00080 pimt protein-L-isoas 99.3 5.6E-11 1.2E-15 99.4 12.1 114 54-179 61-178 (215)
88 PRK04266 fibrillarin; Provisio 99.3 3.9E-10 8.6E-15 95.0 17.3 151 46-203 44-210 (226)
89 PRK13944 protein-L-isoaspartat 99.3 7.1E-11 1.5E-15 98.1 12.4 111 57-179 59-174 (205)
90 PRK15451 tRNA cmo(5)U34 methyl 99.3 7.8E-11 1.7E-15 100.6 12.5 101 70-178 56-164 (247)
91 TIGR00095 RNA methyltransferas 99.3 7.8E-11 1.7E-15 96.7 11.9 111 67-181 46-162 (189)
92 TIGR01177 conserved hypothetic 99.3 2.2E-10 4.8E-15 101.8 15.6 135 57-201 169-313 (329)
93 PF13649 Methyltransf_25: Meth 99.2 1.4E-11 3.1E-16 90.6 6.4 91 74-168 1-99 (101)
94 PRK05785 hypothetical protein; 99.2 8.4E-11 1.8E-15 99.2 11.7 87 71-168 52-139 (226)
95 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 6.4E-10 1.4E-14 92.5 16.8 101 69-176 38-141 (223)
96 PRK06202 hypothetical protein; 99.2 2.6E-10 5.6E-15 96.3 14.5 93 69-167 59-159 (232)
97 PRK07402 precorrin-6B methylas 99.2 2.7E-09 5.8E-14 87.9 19.7 126 67-201 37-168 (196)
98 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.4E-10 3.1E-15 95.4 11.8 128 70-201 16-156 (194)
99 PRK15128 23S rRNA m(5)C1962 me 99.2 4.5E-10 9.8E-15 102.0 16.1 129 69-201 219-367 (396)
100 TIGR00740 methyltransferase, p 99.2 3E-10 6.6E-15 96.3 14.1 102 70-179 53-162 (239)
101 KOG1499 Protein arginine N-met 99.2 3E-11 6.6E-16 105.7 8.0 133 62-201 52-199 (346)
102 PLN02336 phosphoethanolamine N 99.2 1.9E-10 4E-15 107.0 12.8 103 69-176 36-140 (475)
103 PRK06922 hypothetical protein; 99.2 1.6E-10 3.4E-15 109.3 12.3 105 69-177 417-536 (677)
104 PRK00312 pcm protein-L-isoaspa 99.2 9.6E-10 2.1E-14 91.6 14.2 114 54-179 62-176 (212)
105 PRK13942 protein-L-isoaspartat 99.2 9.6E-10 2.1E-14 91.8 13.9 114 53-178 59-176 (212)
106 smart00650 rADc Ribosomal RNA 99.2 2.6E-09 5.7E-14 85.9 15.9 110 61-178 4-113 (169)
107 COG2265 TrmA SAM-dependent met 99.1 5.3E-10 1.2E-14 102.4 12.8 151 54-212 277-431 (432)
108 KOG1271 Methyltransferases [Ge 99.1 1.7E-09 3.7E-14 86.7 14.0 141 53-200 46-202 (227)
109 COG2242 CobL Precorrin-6B meth 99.1 3.1E-09 6.7E-14 86.0 15.6 124 67-201 31-159 (187)
110 PRK14121 tRNA (guanine-N(7)-)- 99.1 2.2E-09 4.7E-14 96.7 16.0 107 70-180 122-237 (390)
111 TIGR03840 TMPT_Se_Te thiopurin 99.1 8E-10 1.7E-14 92.4 12.1 119 54-178 19-153 (213)
112 PRK13255 thiopurine S-methyltr 99.1 3.6E-09 7.7E-14 88.8 15.7 111 54-168 22-147 (218)
113 PHA03411 putative methyltransf 99.1 1.5E-09 3.3E-14 93.2 13.2 119 71-200 65-211 (279)
114 smart00138 MeTrc Methyltransfe 99.1 7.3E-10 1.6E-14 95.6 11.2 104 70-179 99-243 (264)
115 TIGR02081 metW methionine bios 99.1 1.8E-09 3.9E-14 88.8 12.8 90 70-167 13-103 (194)
116 PF05958 tRNA_U5-meth_tr: tRNA 99.1 6.6E-10 1.4E-14 99.6 10.8 152 50-213 177-345 (352)
117 KOG2920 Predicted methyltransf 99.1 1E-10 2.2E-15 99.9 5.1 126 46-177 89-233 (282)
118 PF07021 MetW: Methionine bios 99.1 1.1E-09 2.3E-14 89.2 10.6 88 70-165 13-101 (193)
119 TIGR02716 C20_methyl_CrtF C-20 99.1 4.3E-09 9.2E-14 92.6 15.3 108 60-176 139-252 (306)
120 PRK11188 rrmJ 23S rRNA methylt 99.1 1.1E-08 2.4E-13 85.2 16.6 110 55-178 36-165 (209)
121 PRK10901 16S rRNA methyltransf 99.1 4.1E-09 9E-14 96.9 14.9 128 69-200 243-398 (427)
122 KOG3010 Methyltransferase [Gen 99.0 5E-10 1.1E-14 93.4 7.4 101 73-179 36-139 (261)
123 cd02440 AdoMet_MTases S-adenos 99.0 2.3E-09 5E-14 76.8 9.9 100 73-177 1-103 (107)
124 PRK14902 16S rRNA methyltransf 99.0 1.5E-08 3.2E-13 93.7 17.6 140 53-201 237-406 (444)
125 KOG1540 Ubiquinone biosynthesi 99.0 7.5E-09 1.6E-13 87.1 13.7 129 67-201 97-237 (296)
126 KOG4300 Predicted methyltransf 99.0 1.9E-09 4.2E-14 88.0 9.8 106 73-183 79-187 (252)
127 PF03602 Cons_hypoth95: Conser 99.0 7.4E-10 1.6E-14 90.5 7.0 109 69-182 41-157 (183)
128 TIGR03438 probable methyltrans 99.0 6.4E-09 1.4E-13 91.4 13.2 109 70-183 63-182 (301)
129 PRK11727 23S rRNA mA1618 methy 99.0 2E-08 4.3E-13 88.7 15.2 82 70-153 114-203 (321)
130 PHA03412 putative methyltransf 99.0 5.3E-09 1.2E-13 88.0 10.8 96 70-177 49-161 (241)
131 PLN03075 nicotianamine synthas 99.0 1.3E-08 2.9E-13 88.5 13.6 103 70-178 123-233 (296)
132 PTZ00146 fibrillarin; Provisio 99.0 3.7E-08 8.1E-13 85.5 16.2 150 47-203 105-271 (293)
133 PLN02781 Probable caffeoyl-CoA 99.0 4.3E-09 9.2E-14 89.3 10.1 104 67-177 65-177 (234)
134 COG2518 Pcm Protein-L-isoaspar 99.0 4.3E-09 9.4E-14 86.8 9.5 146 18-179 24-170 (209)
135 TIGR00438 rrmJ cell division p 99.0 8.4E-08 1.8E-12 78.4 17.1 108 56-177 18-145 (188)
136 TIGR00478 tly hemolysin TlyA f 98.9 4.2E-09 9.1E-14 88.8 9.2 107 50-168 55-164 (228)
137 COG4106 Tam Trans-aconitate me 98.9 9.1E-09 2E-13 84.7 10.7 98 69-177 29-128 (257)
138 PRK00274 ksgA 16S ribosomal RN 98.9 3.1E-08 6.8E-13 85.8 14.7 88 58-152 30-117 (272)
139 PRK04148 hypothetical protein; 98.9 8.6E-09 1.9E-13 79.5 9.2 80 57-145 3-83 (134)
140 PRK13943 protein-L-isoaspartat 98.9 3.5E-08 7.6E-13 87.3 14.0 109 58-178 68-180 (322)
141 KOG1500 Protein arginine N-met 98.9 9.1E-09 2E-13 89.7 9.8 99 64-169 171-275 (517)
142 PRK11088 rrmA 23S rRNA methylt 98.9 4.5E-08 9.7E-13 84.7 13.9 91 70-177 85-180 (272)
143 COG2519 GCD14 tRNA(1-methylade 98.9 6.7E-08 1.5E-12 81.6 14.2 123 67-201 91-218 (256)
144 PRK14901 16S rRNA methyltransf 98.9 5.2E-08 1.1E-12 89.8 14.8 128 68-199 250-409 (434)
145 PRK14904 16S rRNA methyltransf 98.9 5.1E-08 1.1E-12 90.1 14.1 142 49-200 232-403 (445)
146 TIGR00563 rsmB ribosomal RNA s 98.9 7.9E-08 1.7E-12 88.4 15.1 139 53-198 225-392 (426)
147 COG1092 Predicted SAM-dependen 98.8 1.1E-07 2.5E-12 85.8 14.8 130 68-201 215-364 (393)
148 KOG3420 Predicted RNA methylas 98.8 9.3E-09 2E-13 79.6 6.5 84 64-151 42-126 (185)
149 KOG2904 Predicted methyltransf 98.8 1.2E-07 2.6E-12 80.7 13.6 126 52-183 128-290 (328)
150 COG0742 N6-adenine-specific me 98.8 4.4E-08 9.6E-13 79.6 10.5 110 68-182 41-158 (187)
151 KOG1541 Predicted protein carb 98.8 3.7E-08 8E-13 81.4 10.1 125 70-203 50-187 (270)
152 PTZ00338 dimethyladenosine tra 98.8 2.2E-07 4.8E-12 81.3 15.5 88 58-151 24-113 (294)
153 TIGR00446 nop2p NOL1/NOP2/sun 98.8 2.4E-07 5.1E-12 80.0 15.3 137 51-197 56-222 (264)
154 PRK14896 ksgA 16S ribosomal RN 98.8 3.7E-08 8E-13 84.7 10.2 87 58-151 17-103 (258)
155 KOG2187 tRNA uracil-5-methyltr 98.8 6E-08 1.3E-12 88.8 11.2 155 53-212 366-533 (534)
156 PRK00811 spermidine synthase; 98.8 6E-08 1.3E-12 84.5 10.6 103 70-177 76-190 (283)
157 PRK14903 16S rRNA methyltransf 98.8 2.3E-07 4.9E-12 85.5 14.8 129 68-200 235-392 (431)
158 PRK04457 spermidine synthase; 98.7 6.2E-08 1.3E-12 83.5 9.9 102 70-178 66-177 (262)
159 PRK04338 N(2),N(2)-dimethylgua 98.7 7.9E-08 1.7E-12 87.0 10.7 97 71-177 58-157 (382)
160 COG4122 Predicted O-methyltran 98.7 1.2E-07 2.5E-12 79.3 10.3 115 53-177 45-165 (219)
161 PLN02476 O-methyltransferase 98.7 1E-07 2.2E-12 82.5 10.1 102 69-177 117-227 (278)
162 PF01135 PCMT: Protein-L-isoas 98.7 1.9E-07 4.2E-12 77.7 11.5 115 54-180 56-174 (209)
163 PF01596 Methyltransf_3: O-met 98.7 7.1E-08 1.5E-12 80.1 7.4 116 55-177 30-154 (205)
164 TIGR00308 TRM1 tRNA(guanine-26 98.7 2.6E-07 5.6E-12 83.4 11.4 98 71-177 45-146 (374)
165 TIGR00755 ksgA dimethyladenosi 98.6 9.4E-07 2E-11 75.7 14.2 86 58-151 17-105 (253)
166 PF08704 GCD14: tRNA methyltra 98.6 6E-07 1.3E-11 76.5 12.6 130 62-202 32-170 (247)
167 PRK03612 spermidine synthase; 98.6 2.7E-07 5.9E-12 86.9 11.4 126 70-200 297-441 (521)
168 PF10672 Methyltrans_SAM: S-ad 98.6 9.5E-08 2.1E-12 83.1 7.2 117 69-189 122-250 (286)
169 PRK13256 thiopurine S-methyltr 98.6 7.9E-07 1.7E-11 74.8 12.3 129 46-178 20-164 (226)
170 KOG2899 Predicted methyltransf 98.6 3.2E-07 7E-12 76.9 9.2 112 67-183 55-214 (288)
171 PF05724 TPMT: Thiopurine S-me 98.6 9.1E-07 2E-11 74.2 11.8 119 47-169 15-148 (218)
172 PF01861 DUF43: Protein of unk 98.6 2.3E-06 5E-11 72.0 14.1 153 45-203 20-178 (243)
173 PRK01581 speE spermidine synth 98.5 9.2E-07 2E-11 79.0 11.6 125 70-201 150-295 (374)
174 TIGR00417 speE spermidine synt 98.5 7.9E-07 1.7E-11 76.9 11.0 103 70-177 72-185 (270)
175 PF00891 Methyltransf_2: O-met 98.5 1.5E-06 3.3E-11 73.7 11.3 99 66-177 96-198 (241)
176 COG1041 Predicted DNA modifica 98.5 2.8E-06 6.2E-11 75.1 13.1 138 56-205 183-332 (347)
177 PLN02366 spermidine synthase 98.5 1.6E-06 3.4E-11 76.4 11.3 102 70-176 91-204 (308)
178 PF02475 Met_10: Met-10+ like- 98.5 6.6E-07 1.4E-11 74.0 8.2 91 68-167 99-193 (200)
179 PF05219 DREV: DREV methyltran 98.5 3.1E-06 6.8E-11 71.9 12.2 94 70-177 94-187 (265)
180 PF05185 PRMT5: PRMT5 arginine 98.5 1.6E-06 3.5E-11 80.0 11.2 98 70-175 186-294 (448)
181 PLN02589 caffeoyl-CoA O-methyl 98.5 8.8E-07 1.9E-11 75.6 8.8 103 68-177 77-189 (247)
182 COG0357 GidB Predicted S-adeno 98.5 4.8E-06 1E-10 69.4 12.8 122 71-201 68-193 (215)
183 PF01170 UPF0020: Putative RNA 98.4 2E-06 4.3E-11 70.0 10.3 134 57-201 15-169 (179)
184 KOG2361 Predicted methyltransf 98.4 9.4E-07 2E-11 74.0 7.2 107 73-183 74-188 (264)
185 PF09445 Methyltransf_15: RNA 98.3 2.5E-06 5.3E-11 68.2 6.8 100 73-177 2-120 (163)
186 PF06080 DUF938: Protein of un 98.3 6.7E-06 1.4E-10 67.9 9.5 94 73-168 28-133 (204)
187 COG2520 Predicted methyltransf 98.2 2.4E-05 5.1E-10 69.5 12.5 123 70-201 188-318 (341)
188 PF01739 CheR: CheR methyltran 98.2 3.1E-06 6.7E-11 69.9 5.5 104 70-179 31-176 (196)
189 COG2521 Predicted archaeal met 98.2 7.2E-06 1.6E-10 68.6 7.5 132 68-201 132-275 (287)
190 PF03291 Pox_MCEL: mRNA cappin 98.2 1.8E-05 3.9E-10 70.4 10.4 126 51-180 43-188 (331)
191 PF02390 Methyltransf_4: Putat 98.2 2.3E-05 5E-10 64.6 10.3 124 73-200 20-157 (195)
192 PRK11783 rlmL 23S rRNA m(2)G24 98.1 3.5E-05 7.7E-10 75.2 13.2 111 55-167 174-335 (702)
193 KOG2497 Predicted methyltransf 98.1 1.5E-06 3.3E-11 74.4 3.3 125 45-172 65-196 (262)
194 COG1352 CheR Methylase of chem 98.1 2.8E-05 6E-10 67.1 11.0 106 70-181 96-244 (268)
195 PRK10611 chemotaxis methyltran 98.1 1.7E-05 3.6E-10 69.2 8.9 104 71-179 116-263 (287)
196 PF02384 N6_Mtase: N-6 DNA Met 98.1 7E-05 1.5E-09 65.9 12.9 167 56-230 32-235 (311)
197 PRK11760 putative 23S rRNA C24 98.1 0.0001 2.2E-09 65.4 13.5 102 53-168 187-295 (357)
198 PF02527 GidB: rRNA small subu 98.1 9.6E-05 2.1E-09 60.4 12.5 117 73-201 51-173 (184)
199 COG1189 Predicted rRNA methyla 98.0 0.00022 4.8E-09 59.9 14.1 162 50-227 59-241 (245)
200 PF05971 Methyltransf_10: Prot 98.0 5E-05 1.1E-09 66.3 9.8 82 71-154 103-192 (299)
201 COG3963 Phospholipid N-methylt 98.0 0.00012 2.6E-09 58.3 10.9 124 50-180 28-159 (194)
202 COG0030 KsgA Dimethyladenosine 98.0 6.5E-05 1.4E-09 64.3 10.1 89 59-152 19-107 (259)
203 COG0220 Predicted S-adenosylme 98.0 7.3E-05 1.6E-09 63.0 10.1 108 72-183 50-169 (227)
204 KOG2940 Predicted methyltransf 98.0 2.2E-05 4.8E-10 65.6 6.6 100 71-177 73-173 (325)
205 PLN02823 spermine synthase 97.9 7E-05 1.5E-09 66.8 9.8 102 70-178 103-220 (336)
206 TIGR02987 met_A_Alw26 type II 97.9 0.001 2.2E-08 62.9 17.5 80 70-151 31-124 (524)
207 PLN02232 ubiquinone biosynthes 97.8 0.0002 4.4E-09 57.0 9.8 78 96-179 1-83 (160)
208 PF05891 Methyltransf_PK: AdoM 97.8 0.00019 4.1E-09 59.7 9.6 133 70-208 55-206 (218)
209 PF09243 Rsm22: Mitochondrial 97.8 0.00047 1E-08 59.8 12.4 126 67-198 30-163 (274)
210 TIGR01444 fkbM_fam methyltrans 97.8 0.00012 2.6E-09 56.7 7.6 56 73-130 1-59 (143)
211 PF05148 Methyltransf_8: Hypot 97.8 0.0014 3.1E-08 54.3 13.9 148 50-234 53-204 (219)
212 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00041 8.8E-09 59.8 11.2 106 55-166 15-121 (262)
213 KOG0820 Ribosomal RNA adenine 97.7 0.00028 6.1E-09 60.4 9.5 94 46-146 35-130 (315)
214 PRK11933 yebU rRNA (cytosine-C 97.7 0.00077 1.7E-08 62.8 13.2 137 53-195 98-262 (470)
215 COG0116 Predicted N6-adenine-s 97.7 0.00082 1.8E-08 60.4 12.8 115 57-177 178-343 (381)
216 KOG1709 Guanidinoacetate methy 97.7 0.00022 4.8E-09 59.1 8.3 104 69-177 100-205 (271)
217 COG4076 Predicted RNA methylas 97.7 8.4E-05 1.8E-09 60.3 5.5 92 71-168 33-127 (252)
218 COG0500 SmtA SAM-dependent met 97.7 0.0016 3.5E-08 48.6 12.5 101 74-180 52-157 (257)
219 PRK00536 speE spermidine synth 97.6 0.00069 1.5E-08 58.3 11.0 94 70-177 72-170 (262)
220 KOG1975 mRNA cap methyltransfe 97.6 0.00026 5.5E-09 62.0 8.1 119 52-180 105-239 (389)
221 PF08123 DOT1: Histone methyla 97.6 0.00056 1.2E-08 56.8 9.3 123 45-176 21-156 (205)
222 KOG1661 Protein-L-isoaspartate 97.6 0.001 2.2E-08 55.0 10.2 119 47-177 57-192 (237)
223 PF07942 N2227: N2227-like pro 97.5 0.0027 5.9E-08 54.9 13.4 123 70-201 56-240 (270)
224 PF12147 Methyltransf_20: Puta 97.5 0.0054 1.2E-07 53.3 14.9 105 70-178 135-249 (311)
225 PRK10742 putative methyltransf 97.5 0.00077 1.7E-08 57.4 9.5 81 73-157 91-181 (250)
226 KOG1501 Arginine N-methyltrans 97.5 0.00025 5.3E-09 64.4 6.6 96 73-170 69-169 (636)
227 PF13679 Methyltransf_32: Meth 97.5 0.0005 1.1E-08 53.6 7.6 48 69-118 24-77 (141)
228 PRK01544 bifunctional N5-gluta 97.4 0.0013 2.9E-08 61.8 11.1 126 70-199 347-484 (506)
229 PF11968 DUF3321: Putative met 97.4 0.0049 1.1E-07 51.3 12.9 132 52-201 29-179 (219)
230 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00047 1E-08 60.4 7.1 58 69-129 18-78 (296)
231 PF01564 Spermine_synth: Sperm 97.4 0.0016 3.5E-08 55.6 10.1 105 70-178 76-191 (246)
232 COG0293 FtsJ 23S rRNA methylas 97.4 0.021 4.7E-07 47.2 16.2 151 53-229 28-201 (205)
233 KOG2915 tRNA(1-methyladenosine 97.3 0.0085 1.8E-07 51.5 13.5 128 66-204 101-236 (314)
234 PHA01634 hypothetical protein 97.3 0.0012 2.6E-08 50.4 7.4 70 68-144 26-97 (156)
235 PF04816 DUF633: Family of unk 97.3 0.0026 5.6E-08 52.9 10.1 116 74-200 1-121 (205)
236 KOG3045 Predicted RNA methylas 97.3 0.0057 1.2E-07 52.2 12.0 108 70-201 180-289 (325)
237 COG0421 SpeE Spermidine syntha 97.2 0.0032 6.9E-08 54.9 10.1 100 72-177 78-189 (282)
238 PF03141 Methyltransf_29: Puta 97.1 0.0011 2.4E-08 61.3 6.6 128 46-181 89-222 (506)
239 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.0022 4.8E-08 55.0 7.8 131 67-202 53-238 (256)
240 KOG3987 Uncharacterized conser 97.1 0.00035 7.7E-09 57.6 2.7 91 71-173 113-203 (288)
241 COG1568 Predicted methyltransf 97.1 0.0026 5.7E-08 54.7 7.9 130 68-201 150-286 (354)
242 KOG1663 O-methyltransferase [S 97.0 0.006 1.3E-07 51.1 8.8 105 67-178 70-183 (237)
243 TIGR03439 methyl_EasF probable 97.0 0.018 3.9E-07 51.1 12.4 107 70-180 76-199 (319)
244 cd00315 Cyt_C5_DNA_methylase C 96.8 0.049 1.1E-06 47.2 13.9 122 73-201 2-141 (275)
245 COG0144 Sun tRNA and rRNA cyto 96.8 0.072 1.6E-06 48.0 15.0 131 68-201 154-315 (355)
246 PF01728 FtsJ: FtsJ-like methy 96.4 0.0066 1.4E-07 49.0 5.5 50 53-102 4-58 (181)
247 PF03059 NAS: Nicotianamine sy 96.3 0.07 1.5E-06 46.3 11.1 100 72-177 122-229 (276)
248 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.1 0.083 1.8E-06 46.1 11.1 148 47-201 65-246 (283)
249 KOG1269 SAM-dependent methyltr 96.0 0.018 3.9E-07 52.0 6.6 102 69-176 109-213 (364)
250 PF07757 AdoMet_MTase: Predict 95.9 0.012 2.5E-07 43.6 4.0 32 71-102 59-90 (112)
251 KOG2730 Methylase [General fun 95.9 0.0087 1.9E-07 50.0 3.5 81 70-152 94-178 (263)
252 COG3129 Predicted SAM-dependen 95.9 0.027 5.8E-07 47.5 6.3 93 57-152 63-166 (292)
253 KOG4589 Cell division protein 95.8 0.14 3E-06 42.0 10.0 105 67-183 66-189 (232)
254 PF01269 Fibrillarin: Fibrilla 95.7 0.48 1E-05 39.8 13.3 150 45-201 44-210 (229)
255 KOG0024 Sorbitol dehydrogenase 95.7 0.039 8.5E-07 48.6 7.1 144 20-178 125-274 (354)
256 COG5459 Predicted rRNA methyla 95.5 0.029 6.3E-07 50.0 5.6 103 67-177 110-224 (484)
257 PF02005 TRM: N2,N2-dimethylgu 95.3 0.096 2.1E-06 47.6 8.3 99 70-177 49-153 (377)
258 COG2384 Predicted SAM-dependen 95.2 0.93 2E-05 38.0 13.1 122 70-200 16-140 (226)
259 PF04445 SAM_MT: Putative SAM- 95.0 0.096 2.1E-06 44.3 7.0 93 72-166 77-181 (234)
260 KOG2078 tRNA modification enzy 94.9 0.047 1E-06 49.7 5.3 94 35-131 212-311 (495)
261 KOG2352 Predicted spermine/spe 94.8 0.19 4.1E-06 46.7 8.9 93 72-168 50-153 (482)
262 PF00145 DNA_methylase: C-5 cy 94.8 0.6 1.3E-05 40.6 12.0 70 73-150 2-72 (335)
263 PF13578 Methyltransf_24: Meth 94.7 0.0041 8.9E-08 45.6 -1.7 97 75-177 1-104 (106)
264 COG4262 Predicted spermidine s 94.7 0.43 9.3E-06 43.0 10.4 126 71-201 290-434 (508)
265 KOG3178 Hydroxyindole-O-methyl 94.4 0.19 4.1E-06 44.8 7.6 95 72-177 179-275 (342)
266 KOG2798 Putative trehalase [Ca 94.2 0.68 1.5E-05 40.9 10.4 32 71-102 151-182 (369)
267 COG1867 TRM1 N2,N2-dimethylgua 93.7 0.14 3.1E-06 45.9 5.5 90 71-167 53-145 (380)
268 PF07091 FmrO: Ribosomal RNA m 93.5 0.39 8.3E-06 41.0 7.6 104 71-183 106-213 (251)
269 KOG1122 tRNA and rRNA cytosine 93.5 2.3 5E-05 39.0 12.8 131 68-201 239-398 (460)
270 PRK09424 pntA NAD(P) transhydr 93.3 1 2.2E-05 42.7 10.8 43 68-112 162-206 (509)
271 TIGR00675 dcm DNA-methyltransf 92.9 2.7 5.9E-05 37.1 12.5 120 74-201 1-138 (315)
272 COG1064 AdhP Zn-dependent alco 92.7 0.85 1.8E-05 40.8 9.0 96 67-179 163-261 (339)
273 PF10237 N6-adenineMlase: Prob 92.5 4.3 9.3E-05 32.4 11.9 129 54-201 11-142 (162)
274 PF02636 Methyltransf_28: Puta 92.5 0.7 1.5E-05 39.4 7.9 33 71-103 19-61 (252)
275 PF01555 N6_N4_Mtase: DNA meth 92.5 0.5 1.1E-05 38.7 6.9 57 52-111 174-230 (231)
276 KOG1227 Putative methyltransfe 92.4 0.081 1.8E-06 46.2 2.0 71 49-121 167-245 (351)
277 PF03686 UPF0146: Uncharacteri 92.3 0.47 1E-05 36.2 5.8 43 57-102 3-46 (127)
278 TIGR00006 S-adenosyl-methyltra 92.3 0.86 1.9E-05 40.2 8.3 66 60-127 10-77 (305)
279 KOG1331 Predicted methyltransf 91.7 0.31 6.8E-06 42.3 4.8 113 46-176 27-143 (293)
280 PF04672 Methyltransf_19: S-ad 91.6 0.9 1.9E-05 39.3 7.5 107 72-182 70-194 (267)
281 COG1889 NOP1 Fibrillarin-like 91.5 7.4 0.00016 32.4 13.1 155 49-214 51-222 (231)
282 PRK11524 putative methyltransf 91.4 0.92 2E-05 39.5 7.6 45 69-115 207-251 (284)
283 COG1565 Uncharacterized conser 91.4 0.74 1.6E-05 41.4 6.9 47 56-102 60-119 (370)
284 PRK13699 putative methylase; P 91.3 1.1 2.4E-05 37.7 7.8 45 70-116 163-207 (227)
285 KOG2671 Putative RNA methylase 91.2 0.3 6.5E-06 43.6 4.3 80 68-151 206-295 (421)
286 COG1255 Uncharacterized protei 91.0 1.9 4.1E-05 32.5 7.6 98 58-177 4-102 (129)
287 COG0270 Dcm Site-specific DNA 90.8 0.91 2E-05 40.4 7.1 74 72-151 4-79 (328)
288 KOG4058 Uncharacterized conser 90.6 2.3 5E-05 33.6 8.2 94 72-177 74-171 (199)
289 PRK12548 shikimate 5-dehydroge 89.8 6.3 0.00014 34.3 11.4 140 55-200 110-257 (289)
290 KOG1201 Hydroxysteroid 17-beta 89.6 1.9 4E-05 37.8 7.7 78 67-147 34-122 (300)
291 PRK15001 SAM-dependent 23S rib 89.6 16 0.00035 33.3 14.3 120 47-183 23-147 (378)
292 PF03141 Methyltransf_29: Puta 89.5 1.2 2.7E-05 41.6 6.9 117 72-201 367-489 (506)
293 COG1063 Tdh Threonine dehydrog 89.5 1.8 4E-05 38.7 8.0 101 70-182 168-274 (350)
294 COG2961 ComJ Protein involved 89.3 11 0.00024 32.3 11.9 143 50-196 66-215 (279)
295 PRK07523 gluconate 5-dehydroge 89.0 9.4 0.0002 31.8 11.7 79 69-150 8-98 (255)
296 PLN02668 indole-3-acetate carb 88.8 6.4 0.00014 35.9 11.0 33 71-103 64-113 (386)
297 COG1748 LYS9 Saccharopine dehy 88.5 4.2 9.2E-05 37.1 9.6 74 72-151 2-80 (389)
298 PRK06124 gluconate 5-dehydroge 88.5 9.8 0.00021 31.7 11.5 79 68-149 8-98 (256)
299 PF04989 CmcI: Cephalosporin h 88.4 2.8 6.2E-05 34.8 7.7 102 69-176 31-145 (206)
300 KOG3115 Methyltransferase-like 88.3 3 6.4E-05 34.8 7.6 105 72-180 62-185 (249)
301 KOG0725 Reductases with broad 88.3 12 0.00027 32.2 12.1 81 67-149 4-99 (270)
302 TIGR02354 thiF_fam2 thiamine b 87.9 2.7 5.9E-05 34.6 7.4 35 67-101 17-54 (200)
303 PRK01438 murD UDP-N-acetylmura 87.5 2.7 5.9E-05 39.1 8.0 75 67-149 12-88 (480)
304 PRK12549 shikimate 5-dehydroge 87.4 16 0.00035 31.7 12.3 132 56-200 112-248 (284)
305 KOG2651 rRNA adenine N-6-methy 86.9 2.1 4.6E-05 38.9 6.4 33 70-102 153-186 (476)
306 PRK09880 L-idonate 5-dehydroge 86.7 10 0.00022 33.4 11.0 43 68-112 167-212 (343)
307 PRK10458 DNA cytosine methylas 86.7 21 0.00046 33.5 13.3 42 71-114 88-130 (467)
308 PF05206 TRM13: Methyltransfer 86.6 1.6 3.5E-05 37.6 5.5 43 60-102 8-57 (259)
309 cd08281 liver_ADH_like1 Zinc-d 86.4 2.2 4.9E-05 38.1 6.7 43 67-111 188-233 (371)
310 PRK08267 short chain dehydroge 86.0 11 0.00023 31.6 10.3 74 72-149 2-87 (260)
311 PRK07326 short chain dehydroge 85.9 13 0.00028 30.5 10.6 76 70-149 5-92 (237)
312 COG4301 Uncharacterized conser 85.4 12 0.00027 32.2 9.9 114 67-184 75-199 (321)
313 PRK07109 short chain dehydroge 85.3 19 0.00042 31.8 12.0 79 69-149 6-95 (334)
314 TIGR00561 pntA NAD(P) transhyd 84.6 8.8 0.00019 36.4 9.8 92 69-168 162-276 (511)
315 PLN02740 Alcohol dehydrogenase 84.6 2.4 5.1E-05 38.2 5.9 43 67-111 195-240 (381)
316 COG0286 HsdM Type I restrictio 84.4 6.2 0.00013 37.2 8.8 105 70-177 186-327 (489)
317 PF11599 AviRa: RRNA methyltra 84.4 5.2 0.00011 33.6 7.2 45 70-116 51-99 (246)
318 PRK06181 short chain dehydroge 84.2 17 0.00038 30.3 10.8 75 72-149 2-88 (263)
319 TIGR01809 Shik-DH-AROM shikima 83.9 28 0.0006 30.2 12.8 125 68-200 122-252 (282)
320 PF03492 Methyltransf_7: SAM d 83.8 12 0.00025 33.5 9.8 81 70-152 16-120 (334)
321 PRK13699 putative methylase; P 83.8 10 0.00022 31.9 9.0 65 134-201 15-94 (227)
322 PRK08265 short chain dehydroge 83.6 16 0.00035 30.7 10.4 76 69-149 4-90 (261)
323 PF06962 rRNA_methylase: Putat 83.3 12 0.00025 29.2 8.4 85 94-183 1-98 (140)
324 COG3392 Adenine-specific DNA m 82.9 1.5 3.3E-05 37.8 3.6 49 54-102 6-59 (330)
325 PRK05872 short chain dehydroge 82.9 16 0.00034 31.5 10.2 79 68-149 6-95 (296)
326 PRK05867 short chain dehydroge 82.8 7 0.00015 32.6 7.8 79 69-149 7-96 (253)
327 PRK05650 short chain dehydroge 82.5 16 0.00034 30.8 9.9 75 73-149 2-87 (270)
328 PRK07454 short chain dehydroge 82.5 25 0.00054 28.9 10.9 78 70-150 5-94 (241)
329 PF02086 MethyltransfD12: D12 82.3 1.9 4.1E-05 36.4 4.1 45 58-102 8-52 (260)
330 PF10354 DUF2431: Domain of un 82.2 24 0.00051 28.2 11.5 121 78-201 4-150 (166)
331 PRK09291 short chain dehydroge 82.1 8.9 0.00019 31.9 8.1 75 71-148 2-82 (257)
332 TIGR01202 bchC 2-desacetyl-2-h 82.0 6.3 0.00014 34.3 7.4 87 69-178 143-232 (308)
333 TIGR02822 adh_fam_2 zinc-bindi 82.0 29 0.00062 30.5 11.7 92 67-178 162-255 (329)
334 cd00401 AdoHcyase S-adenosyl-L 81.9 2.9 6.2E-05 38.6 5.3 36 67-102 198-235 (413)
335 PRK14027 quinate/shikimate deh 81.6 24 0.00052 30.7 10.7 133 57-200 113-250 (283)
336 PRK06114 short chain dehydroge 81.4 30 0.00065 28.8 11.8 80 69-150 6-97 (254)
337 PRK12475 thiamine/molybdopteri 81.2 4.6 0.0001 36.1 6.3 36 67-102 20-58 (338)
338 PRK12749 quinate/shikimate deh 80.9 28 0.00062 30.3 11.0 137 58-200 111-254 (288)
339 PRK08862 short chain dehydroge 80.7 8.9 0.00019 31.8 7.6 77 69-147 3-91 (227)
340 PRK07904 short chain dehydroge 80.7 24 0.00052 29.6 10.3 75 70-146 7-94 (253)
341 PRK11524 putative methyltransf 80.4 3.1 6.7E-05 36.1 4.8 44 135-180 23-82 (284)
342 PF01488 Shikimate_DH: Shikima 80.2 9.6 0.00021 29.1 7.0 78 67-152 8-88 (135)
343 PF07279 DUF1442: Protein of u 80.2 34 0.00074 28.7 10.9 100 70-180 41-150 (218)
344 cd01080 NAD_bind_m-THF_DH_Cycl 79.8 8.8 0.00019 30.7 6.9 50 50-102 26-78 (168)
345 PRK06035 3-hydroxyacyl-CoA deh 79.7 14 0.0003 32.0 8.7 40 72-113 4-45 (291)
346 PRK05854 short chain dehydroge 79.6 41 0.00089 29.3 12.0 79 69-149 12-103 (313)
347 cd08230 glucose_DH Glucose deh 79.6 16 0.00034 32.3 9.3 33 69-101 171-205 (355)
348 cd08283 FDH_like_1 Glutathione 79.4 5.8 0.00013 35.7 6.5 44 67-112 181-227 (386)
349 PF03721 UDPG_MGDP_dh_N: UDP-g 79.4 3.6 7.8E-05 33.5 4.6 113 73-195 2-139 (185)
350 PRK08628 short chain dehydroge 79.4 25 0.00054 29.2 10.0 77 69-148 5-92 (258)
351 cd08254 hydroxyacyl_CoA_DH 6-h 79.4 13 0.00027 32.2 8.4 42 68-111 163-206 (338)
352 PRK06138 short chain dehydroge 79.4 25 0.00054 29.0 9.9 78 69-149 3-91 (252)
353 COG0686 Ald Alanine dehydrogen 79.3 3 6.5E-05 37.0 4.2 95 72-175 169-265 (371)
354 PRK05876 short chain dehydroge 79.3 12 0.00026 31.9 8.1 79 69-149 4-93 (275)
355 PRK07792 fabG 3-ketoacyl-(acyl 78.9 14 0.0003 32.1 8.5 82 67-149 8-99 (306)
356 cd00755 YgdL_like Family of ac 78.4 2.8 6.1E-05 35.4 3.8 34 69-102 9-45 (231)
357 PF01555 N6_N4_Mtase: DNA meth 78.3 23 0.0005 28.6 9.3 72 155-228 35-110 (231)
358 PF02737 3HCDH_N: 3-hydroxyacy 78.0 5.5 0.00012 32.1 5.3 97 74-177 2-113 (180)
359 TIGR02356 adenyl_thiF thiazole 77.9 6.3 0.00014 32.4 5.7 35 67-101 17-54 (202)
360 PRK07102 short chain dehydroge 77.7 34 0.00073 28.2 10.2 73 72-147 2-84 (243)
361 KOG1253 tRNA methyltransferase 77.6 3.2 7E-05 38.8 4.2 100 70-177 109-215 (525)
362 PRK07035 short chain dehydroge 77.6 14 0.00029 30.7 7.8 78 69-148 6-94 (252)
363 PRK08644 thiamine biosynthesis 77.2 12 0.00025 31.2 7.1 35 67-101 24-61 (212)
364 PRK08213 gluconate 5-dehydroge 77.0 19 0.00041 30.1 8.5 78 69-149 10-99 (259)
365 PRK07063 short chain dehydroge 76.7 15 0.00033 30.7 7.9 79 69-149 5-96 (260)
366 PRK12826 3-ketoacyl-(acyl-carr 76.6 16 0.00035 30.0 8.0 80 69-151 4-95 (251)
367 PRK06949 short chain dehydroge 76.6 22 0.00047 29.5 8.8 78 69-149 7-96 (258)
368 KOG2912 Predicted DNA methylas 76.5 4.4 9.6E-05 36.0 4.5 76 75-152 107-191 (419)
369 KOG1098 Putative SAM-dependent 76.5 4.3 9.3E-05 39.1 4.7 50 53-102 27-79 (780)
370 PRK06139 short chain dehydroge 76.5 17 0.00038 32.1 8.5 78 69-148 5-93 (330)
371 PRK07097 gluconate 5-dehydroge 76.5 17 0.00037 30.5 8.2 80 68-149 7-97 (265)
372 PLN03209 translocon at the inn 76.4 46 0.001 32.1 11.6 77 67-147 76-167 (576)
373 COG1179 Dinucleotide-utilizing 76.4 3.8 8.2E-05 35.0 3.9 43 68-112 27-72 (263)
374 cd01483 E1_enzyme_family Super 76.3 14 0.00031 28.2 7.0 29 73-101 1-32 (143)
375 COG1893 ApbA Ketopantoate redu 76.0 14 0.00031 32.5 7.7 93 73-177 2-100 (307)
376 PRK00421 murC UDP-N-acetylmura 75.9 19 0.00042 33.3 9.0 72 68-151 4-78 (461)
377 PF06859 Bin3: Bicoid-interact 75.7 1.2 2.6E-05 33.2 0.7 40 139-180 1-46 (110)
378 PRK06172 short chain dehydroge 75.6 17 0.00037 30.2 7.9 79 69-149 5-94 (253)
379 cd08277 liver_alcohol_DH_like 75.6 7.6 0.00017 34.6 6.0 42 67-110 181-225 (365)
380 PRK08339 short chain dehydroge 75.6 21 0.00046 30.1 8.6 78 69-148 6-94 (263)
381 PRK07530 3-hydroxybutyryl-CoA 75.5 10 0.00022 32.9 6.6 97 72-175 5-116 (292)
382 KOG2539 Mitochondrial/chloropl 75.1 11 0.00023 35.3 6.7 87 67-155 197-290 (491)
383 PRK05565 fabG 3-ketoacyl-(acyl 75.1 44 0.00095 27.3 10.6 78 69-149 3-93 (247)
384 PRK07890 short chain dehydroge 74.9 19 0.00042 29.8 8.0 79 69-149 3-92 (258)
385 PRK05866 short chain dehydroge 74.6 20 0.00044 30.9 8.3 79 69-149 38-127 (293)
386 PRK07688 thiamine/molybdopteri 74.4 9.4 0.0002 34.2 6.2 34 68-101 21-57 (339)
387 COG1004 Ugd Predicted UDP-gluc 74.2 5.4 0.00012 36.5 4.6 37 73-111 2-40 (414)
388 PRK09242 tropinone reductase; 74.1 19 0.00041 30.0 7.9 79 68-148 6-97 (257)
389 PRK08085 gluconate 5-dehydroge 74.0 19 0.00042 29.9 7.8 79 69-149 7-96 (254)
390 PRK06935 2-deoxy-D-gluconate 3 73.9 23 0.0005 29.5 8.3 77 69-148 13-100 (258)
391 COG0499 SAM1 S-adenosylhomocys 73.7 4.9 0.00011 36.3 4.1 58 46-110 190-249 (420)
392 PF03269 DUF268: Caenorhabditi 73.5 2.3 5E-05 34.0 1.9 97 71-177 2-110 (177)
393 PRK06701 short chain dehydroge 73.4 22 0.00047 30.7 8.2 80 68-148 43-133 (290)
394 PLN02827 Alcohol dehydrogenase 73.4 24 0.00052 31.7 8.7 36 67-102 190-228 (378)
395 PRK12429 3-hydroxybutyrate deh 73.3 51 0.0011 27.1 11.4 76 70-148 3-90 (258)
396 PRK05708 2-dehydropantoate 2-r 72.8 15 0.00033 32.1 7.1 93 72-177 3-103 (305)
397 PRK00258 aroE shikimate 5-dehy 72.7 61 0.0013 27.9 11.4 118 68-200 120-242 (278)
398 KOG1596 Fibrillarin and relate 72.7 62 0.0013 27.9 10.9 69 33-102 116-191 (317)
399 PRK07985 oxidoreductase; Provi 72.7 24 0.00053 30.4 8.3 81 68-148 46-137 (294)
400 PF08468 MTS_N: Methyltransfer 72.5 14 0.0003 29.2 6.1 137 60-226 2-139 (155)
401 PRK06720 hypothetical protein; 72.5 26 0.00057 27.8 7.8 81 69-151 14-105 (169)
402 PRK12823 benD 1,6-dihydroxycyc 72.1 28 0.00062 28.9 8.4 76 69-147 6-92 (260)
403 PRK07478 short chain dehydroge 71.8 24 0.00052 29.3 7.9 79 69-149 4-93 (254)
404 cd01487 E1_ThiF_like E1_ThiF_l 71.7 32 0.0007 27.5 8.2 30 73-102 1-33 (174)
405 PRK08223 hypothetical protein; 71.6 5 0.00011 35.1 3.7 36 67-102 23-61 (287)
406 PRK07066 3-hydroxybutyryl-CoA 71.3 24 0.00052 31.4 8.0 99 72-177 8-117 (321)
407 PRK06194 hypothetical protein; 71.2 22 0.00047 30.2 7.6 78 69-149 4-93 (287)
408 PRK02006 murD UDP-N-acetylmura 71.1 26 0.00057 32.9 8.7 73 70-150 6-80 (498)
409 TIGR03201 dearomat_had 6-hydro 71.0 14 0.00031 32.5 6.7 43 67-111 163-207 (349)
410 PRK01747 mnmC bifunctional tRN 70.9 33 0.00072 33.4 9.6 41 155-201 185-225 (662)
411 PRK08762 molybdopterin biosynt 70.8 16 0.00035 33.0 7.0 34 68-101 132-168 (376)
412 PLN03154 putative allyl alcoho 70.7 16 0.00035 32.4 6.9 36 67-102 155-193 (348)
413 PRK12481 2-deoxy-D-gluconate 3 70.7 26 0.00057 29.2 7.9 77 69-149 6-93 (251)
414 TIGR02818 adh_III_F_hyde S-(hy 70.6 11 0.00024 33.7 5.8 43 67-111 182-227 (368)
415 PRK07677 short chain dehydroge 70.5 26 0.00057 29.0 7.9 75 71-147 1-86 (252)
416 PF05050 Methyltransf_21: Meth 70.4 13 0.00028 28.5 5.6 40 76-117 1-48 (167)
417 PRK08589 short chain dehydroge 70.3 29 0.00063 29.3 8.2 78 69-149 4-92 (272)
418 PRK06113 7-alpha-hydroxysteroi 70.1 31 0.00067 28.7 8.2 79 69-149 9-98 (255)
419 PRK08703 short chain dehydroge 69.7 36 0.00078 27.9 8.5 59 69-130 4-67 (239)
420 PRK07666 fabG 3-ketoacyl-(acyl 69.6 34 0.00074 28.0 8.3 77 69-148 5-93 (239)
421 cd00757 ThiF_MoeB_HesA_family 69.3 13 0.00027 31.2 5.6 35 68-102 18-55 (228)
422 PF02558 ApbA: Ketopantoate re 69.3 10 0.00023 29.0 4.8 91 75-179 2-102 (151)
423 PRK08303 short chain dehydroge 68.9 27 0.00059 30.4 7.9 79 69-147 6-103 (305)
424 PRK06153 hypothetical protein; 68.7 6 0.00013 36.1 3.7 34 69-102 174-210 (393)
425 PRK07814 short chain dehydroge 68.5 37 0.0008 28.5 8.4 76 69-147 8-95 (263)
426 cd01075 NAD_bind_Leu_Phe_Val_D 68.4 27 0.00058 28.6 7.2 43 66-112 23-69 (200)
427 TIGR03366 HpnZ_proposed putati 68.4 18 0.00039 30.9 6.5 34 69-102 119-155 (280)
428 PRK07062 short chain dehydroge 68.1 34 0.00075 28.5 8.1 79 69-149 6-97 (265)
429 PRK05597 molybdopterin biosynt 68.1 17 0.00036 32.7 6.4 35 68-102 25-62 (355)
430 cd08237 ribitol-5-phosphate_DH 68.0 15 0.00032 32.4 6.1 41 69-111 162-206 (341)
431 PRK12935 acetoacetyl-CoA reduc 68.0 40 0.00086 27.7 8.4 80 69-150 4-95 (247)
432 TIGR01832 kduD 2-deoxy-D-gluco 68.0 31 0.00067 28.4 7.7 77 69-149 3-90 (248)
433 TIGR03206 benzo_BadH 2-hydroxy 67.9 39 0.00085 27.7 8.3 76 70-148 2-89 (250)
434 PRK06522 2-dehydropantoate 2-r 67.9 78 0.0017 27.1 10.9 92 73-177 2-99 (304)
435 PRK08277 D-mannonate oxidoredu 67.9 29 0.00063 29.3 7.7 77 69-147 8-95 (278)
436 cd01492 Aos1_SUMO Ubiquitin ac 67.8 23 0.00049 29.0 6.7 36 67-102 17-55 (197)
437 TIGR01963 PHB_DH 3-hydroxybuty 67.8 29 0.00062 28.6 7.5 75 72-149 2-88 (255)
438 PRK06125 short chain dehydroge 67.7 40 0.00086 28.1 8.4 79 69-149 5-91 (259)
439 TIGR00518 alaDH alanine dehydr 67.6 11 0.00024 34.1 5.3 33 70-102 166-200 (370)
440 PRK08324 short chain dehydroge 67.6 90 0.002 30.6 11.9 79 68-149 419-508 (681)
441 PRK07791 short chain dehydroge 67.5 32 0.00069 29.5 7.9 82 69-150 4-103 (286)
442 PRK14106 murD UDP-N-acetylmura 67.3 52 0.0011 30.2 9.7 74 69-149 3-78 (450)
443 PRK07825 short chain dehydroge 67.3 74 0.0016 26.6 10.1 75 69-149 3-88 (273)
444 cd01485 E1-1_like Ubiquitin ac 66.9 9.6 0.00021 31.3 4.3 34 68-101 16-52 (198)
445 COG0677 WecC UDP-N-acetyl-D-ma 66.9 55 0.0012 30.2 9.2 115 72-199 10-152 (436)
446 PF12242 Eno-Rase_NADH_b: NAD( 66.8 19 0.0004 25.1 4.9 43 59-101 27-73 (78)
447 PRK07774 short chain dehydroge 66.7 40 0.00086 27.7 8.2 78 69-149 4-93 (250)
448 PRK00141 murD UDP-N-acetylmura 66.6 23 0.0005 33.1 7.3 73 67-150 11-85 (473)
449 PLN02657 3,8-divinyl protochlo 66.2 50 0.0011 30.0 9.2 76 68-146 57-143 (390)
450 COG0863 DNA modification methy 66.2 33 0.00071 29.4 7.7 56 58-116 211-266 (302)
451 PRK08217 fabG 3-ketoacyl-(acyl 65.7 44 0.00095 27.4 8.2 77 69-148 3-91 (253)
452 TIGR02437 FadB fatty oxidation 65.5 33 0.00072 34.0 8.4 96 72-174 314-424 (714)
453 PRK06128 oxidoreductase; Provi 65.4 43 0.00092 28.8 8.3 81 69-149 53-144 (300)
454 PF00070 Pyr_redox: Pyridine n 65.2 31 0.00067 23.3 6.0 48 74-121 2-57 (80)
455 KOG3924 Putative protein methy 65.2 19 0.00042 32.9 6.1 103 70-177 192-307 (419)
456 PF01795 Methyltransf_5: MraW 65.1 5 0.00011 35.5 2.4 60 68-129 18-79 (310)
457 PRK05786 fabG 3-ketoacyl-(acyl 64.9 36 0.00079 27.7 7.5 78 69-150 3-92 (238)
458 cd05213 NAD_bind_Glutamyl_tRNA 64.9 67 0.0014 28.2 9.5 34 69-102 176-212 (311)
459 PRK11730 fadB multifunctional 64.7 33 0.00071 34.0 8.2 96 72-174 314-424 (715)
460 PLN02494 adenosylhomocysteinas 64.6 10 0.00023 35.5 4.5 35 68-102 251-287 (477)
461 PRK05993 short chain dehydroge 64.6 55 0.0012 27.7 8.8 70 71-149 4-86 (277)
462 PLN02780 ketoreductase/ oxidor 64.5 35 0.00075 30.0 7.7 58 70-129 52-114 (320)
463 PRK09489 rsmC 16S ribosomal RN 64.4 87 0.0019 28.0 10.2 115 63-195 12-129 (342)
464 COG0771 MurD UDP-N-acetylmuram 64.0 32 0.0007 32.1 7.5 75 69-151 5-81 (448)
465 KOG1562 Spermidine synthase [A 63.6 31 0.00066 30.5 6.8 107 70-180 121-238 (337)
466 PRK03369 murD UDP-N-acetylmura 63.6 24 0.00051 33.2 6.8 71 69-151 10-82 (488)
467 PRK08643 acetoin reductase; Va 63.4 41 0.00089 27.8 7.7 75 71-148 2-88 (256)
468 PF00670 AdoHcyase_NAD: S-aden 63.4 18 0.0004 28.8 5.1 129 67-225 19-149 (162)
469 PRK07889 enoyl-(acyl carrier p 63.3 27 0.00058 29.3 6.5 78 69-149 5-95 (256)
470 TIGR00027 mthyl_TIGR00027 meth 63.2 97 0.0021 26.5 10.1 105 72-180 83-199 (260)
471 COG1062 AdhC Zn-dependent alco 63.1 16 0.00035 32.8 5.1 43 68-112 183-228 (366)
472 PF04072 LCM: Leucine carboxyl 62.6 25 0.00055 28.2 6.0 87 72-161 80-181 (183)
473 PF00899 ThiF: ThiF family; I 62.5 8.2 0.00018 29.3 2.9 32 71-102 2-36 (135)
474 PRK06130 3-hydroxybutyryl-CoA 62.4 24 0.00052 30.7 6.2 40 72-113 5-46 (311)
475 cd08239 THR_DH_like L-threonin 62.2 25 0.00054 30.7 6.4 36 67-102 160-198 (339)
476 PRK07576 short chain dehydroge 62.2 53 0.0012 27.5 8.2 76 69-147 7-94 (264)
477 PRK11154 fadJ multifunctional 62.0 42 0.00091 33.2 8.4 97 72-175 310-422 (708)
478 KOG0821 Predicted ribosomal RN 61.9 24 0.00052 30.0 5.6 57 58-116 38-95 (326)
479 PRK07806 short chain dehydroge 61.9 60 0.0013 26.6 8.4 61 69-131 4-68 (248)
480 PRK08936 glucose-1-dehydrogena 61.5 68 0.0015 26.7 8.7 80 68-148 4-94 (261)
481 PRK12825 fabG 3-ketoacyl-(acyl 61.2 61 0.0013 26.3 8.3 77 70-148 5-93 (249)
482 PRK12743 oxidoreductase; Provi 61.2 61 0.0013 26.9 8.3 77 71-149 2-90 (256)
483 PRK08220 2,3-dihydroxybenzoate 61.2 91 0.002 25.6 9.4 71 69-150 6-87 (252)
484 PRK08993 2-deoxy-D-gluconate 3 60.7 47 0.001 27.6 7.6 77 69-149 8-95 (253)
485 PRK12769 putative oxidoreducta 60.7 23 0.00049 34.6 6.2 33 70-102 326-360 (654)
486 COG0275 Predicted S-adenosylme 60.4 51 0.0011 29.2 7.7 57 67-125 20-79 (314)
487 cd08300 alcohol_DH_class_III c 60.4 27 0.00058 31.1 6.3 42 67-110 183-227 (368)
488 PLN02586 probable cinnamyl alc 60.2 24 0.00051 31.5 5.9 34 69-102 182-217 (360)
489 PRK07231 fabG 3-ketoacyl-(acyl 60.2 57 0.0012 26.7 7.9 78 69-149 3-91 (251)
490 TIGR02279 PaaC-3OHAcCoADH 3-hy 60.1 44 0.00094 31.7 7.8 98 72-177 6-118 (503)
491 PRK12939 short chain dehydroge 60.0 54 0.0012 26.8 7.8 76 69-147 5-92 (250)
492 PRK09072 short chain dehydroge 59.9 57 0.0012 27.2 8.0 76 70-148 4-89 (263)
493 PRK05600 thiamine biosynthesis 59.9 22 0.00048 32.2 5.6 36 67-102 37-75 (370)
494 PRK06249 2-dehydropantoate 2-r 59.9 43 0.00092 29.3 7.4 91 72-177 6-105 (313)
495 PRK08416 7-alpha-hydroxysteroi 59.9 63 0.0014 26.9 8.2 79 68-147 5-95 (260)
496 PRK05476 S-adenosyl-L-homocyst 59.6 25 0.00053 32.6 5.9 35 68-102 209-245 (425)
497 TIGR00936 ahcY adenosylhomocys 59.5 19 0.00042 33.1 5.2 35 68-102 192-228 (406)
498 COG0300 DltE Short-chain dehyd 59.3 71 0.0015 27.6 8.4 79 69-149 4-94 (265)
499 TIGR01318 gltD_gamma_fam gluta 59.3 28 0.00062 32.4 6.4 33 70-102 140-174 (467)
500 PRK12937 short chain dehydroge 59.3 69 0.0015 26.1 8.3 80 69-149 3-93 (245)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.96 E-value=9.9e-29 Score=200.16 Aligned_cols=144 Identities=35% Similarity=0.557 Sum_probs=94.4
Q ss_pred eEEEEeccCcCCcceEEeccHHHHHHHHHhc------cCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHH
Q 026274 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEV 106 (241)
Q Consensus 35 ~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~------~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~ 106 (241)
.+|.|.+....++|.++|+++++|++||..+ ...+++++|||||||+|++|+++++. +++|++||+++ +
T Consensus 4 ~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~ 80 (173)
T PF10294_consen 4 KTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---V 80 (173)
T ss_dssp -------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----H
T ss_pred cccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---h
Confidence 4677888888899999999999999999984 56789999999999999999999999 55999999994 9
Q ss_pred HHHHHHHHHHcC----CceEEEEeecCCCCc-C-cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 107 LKNMRRVCEMNK----LNCRVMGLTWGFLDA-S-IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 107 l~~~~~n~~~n~----~~~~~~~l~w~~~~~-~-~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+++++.|++.|+ .++.+..++|++... . ....+||+|+++||+|+...+++|++++.+++++++. +++++..
T Consensus 81 l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~--vl~~~~~ 158 (173)
T PF10294_consen 81 LELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK--VLLAYKR 158 (173)
T ss_dssp HHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT--EEEEEE-
T ss_pred hHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE--EEEEeCE
Confidence 999999999987 478899999998431 1 1235899999999999999999999999999985544 8888887
Q ss_pred cCc
Q 026274 181 RSG 183 (241)
Q Consensus 181 r~~ 183 (241)
|..
T Consensus 159 R~~ 161 (173)
T PF10294_consen 159 RRK 161 (173)
T ss_dssp S-T
T ss_pred ecH
Confidence 754
No 2
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.9e-18 Score=144.92 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=121.6
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
..+.|++....+.++|++ |.+.+..++|.+... ++++|||+|||+|++|++++++|+ +|+++|++| .+++.++
T Consensus 129 ~~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp--~AV~aa~ 202 (300)
T COG2264 129 DELNIELDPGLAFGTGTH--PTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP--QAVEAAR 202 (300)
T ss_pred CceEEEEccccccCCCCC--hhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCH--HHHHHHH
Confidence 467888888888888887 999999999987543 889999999999999999999999 699999996 6999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|++.|++.... ...+..........+||+|+|+= -...+..|...+.++++ |+|.++++---......+....
T Consensus 203 eNa~~N~v~~~~-~~~~~~~~~~~~~~~~DvIVANI---LA~vl~~La~~~~~~lk--pgg~lIlSGIl~~q~~~V~~a~ 276 (300)
T COG2264 203 ENARLNGVELLV-QAKGFLLLEVPENGPFDVIVANI---LAEVLVELAPDIKRLLK--PGGRLILSGILEDQAESVAEAY 276 (300)
T ss_pred HHHHHcCCchhh-hcccccchhhcccCcccEEEehh---hHHHHHHHHHHHHHHcC--CCceEEEEeehHhHHHHHHHHH
Confidence 999999997411 22222222222335899999862 23456688888999998 6777777754444455566666
Q ss_pred HHcCCEEEEEec
Q 026274 192 VKWGLKCVKLVD 203 (241)
Q Consensus 192 ~~~g~~~~~i~~ 203 (241)
.+.||.+.....
T Consensus 277 ~~~gf~v~~~~~ 288 (300)
T COG2264 277 EQAGFEVVEVLE 288 (300)
T ss_pred HhCCCeEeEEEe
Confidence 788999988743
No 3
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.76 E-value=1e-18 Score=140.70 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=123.8
Q ss_pred cCCCCcceEEEEeecCCCCC-CceEEEEecc-CcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH
Q 026274 13 MTDKHMTTVSQHYFVDESDK-PSFSIAIIEN-MKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK 90 (241)
Q Consensus 13 ~~~~~~~~~~~~~f~~~~~~-~~~~i~i~~~-~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~ 90 (241)
+++|..+.++-++-...++. ......+..- ....+|...|.+++.|++|+..+++..+|++|||+|+|+|+.++++++
T Consensus 20 ~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~ 99 (218)
T COG3897 20 LPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAAR 99 (218)
T ss_pred CCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHH
Confidence 45666666666655443321 1111111111 124589999999999999999999999999999999999999999999
Q ss_pred hCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcC
Q 026274 91 VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSS 169 (241)
Q Consensus 91 ~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~ 169 (241)
.|+ .|+.+|+.+ -..++++.|++.|+..+.+...+... .+..||+|+++|++|+......++.+..++..
T Consensus 100 aGA~~v~a~d~~P--~~~~ai~lNa~angv~i~~~~~d~~g-----~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~-- 170 (218)
T COG3897 100 AGAAEVVAADIDP--WLEQAIRLNAAANGVSILFTHADLIG-----SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAE-- 170 (218)
T ss_pred hhhHHHHhcCCCh--HHHHHhhcchhhccceeEEeeccccC-----CCcceeEEEeeceecCchHHHHHHHHHHHHHh--
Confidence 998 799999996 59999999999999998888766543 23479999999999999999999997776654
Q ss_pred CCeEEEEEeeccCc
Q 026274 170 PGSVFITTYHNRSG 183 (241)
Q Consensus 170 ~~~~~~~~~~~r~~ 183 (241)
.|..+++..+.|..
T Consensus 171 ~g~~vlvgdp~R~~ 184 (218)
T COG3897 171 AGAAVLVGDPGRAY 184 (218)
T ss_pred CCCEEEEeCCCCCC
Confidence 45555555555543
No 4
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.3e-19 Score=138.60 Aligned_cols=150 Identities=27% Similarity=0.415 Sum_probs=113.0
Q ss_pred cc-eEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc--
Q 026274 47 YG-LFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-- 120 (241)
Q Consensus 47 ~g-~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~-- 120 (241)
+| .++||+...|+.++++++..++|++|||||.| ||+.|+++|... ..|..||.++ +.++++++....|...
T Consensus 5 tgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMASSL 82 (201)
T ss_pred CCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhccccccc
Confidence 44 58999999999999999999999999999999 999999999874 3899999996 6999999877777321
Q ss_pred eEEEEeecCCCC--cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHH--HHHHcCC
Q 026274 121 CRVMGLTWGFLD--ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEF--LMVKWGL 196 (241)
Q Consensus 121 ~~~~~l~w~~~~--~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~--~~~~~g~ 196 (241)
-+...+.|.... .......||+|+++||+|..+..+.|+++++.+|+|.+.++ +++ +|++..+..| ..+..||
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al-~fs--PRRg~sL~kF~de~~~~gf 159 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRAL-LFS--PRRGQSLQKFLDEVGTVGF 159 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCccccee-Eec--CcccchHHHHHHHHHhcee
Confidence 122233333222 22234589999999999999999999999999999755533 333 3444444444 3577888
Q ss_pred EEEEE
Q 026274 197 KCVKL 201 (241)
Q Consensus 197 ~~~~i 201 (241)
.+..-
T Consensus 160 ~v~l~ 164 (201)
T KOG3201|consen 160 TVCLE 164 (201)
T ss_pred EEEec
Confidence 76654
No 5
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.76 E-value=1.6e-17 Score=144.47 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=114.5
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....|.|...++.++|.+ +++.+..++|.+. ..++++|||+|||||++|++++++|+ +|+++|+++ .+++.++
T Consensus 128 ~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHH
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHH
Confidence 567888888888888888 9999999999876 45778999999999999999999999 799999997 5999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|+..|++..++.... .......+||+|+|+ -..+.+..++..+.++|+ ++|.++++--.......+...+
T Consensus 202 ~N~~~N~~~~~~~v~~----~~~~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l~--~~G~lIlSGIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 202 ENAELNGVEDRIEVSL----SEDLVEGKFDLVVAN---ILADVLLELAPDIASLLK--PGGYLILSGILEEQEDEVIEAY 272 (295)
T ss_dssp HHHHHTT-TTCEEESC----TSCTCCS-EEEEEEE---S-HHHHHHHHHHCHHHEE--EEEEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHcCCCeeEEEEE----ecccccccCCEEEEC---CCHHHHHHHHHHHHHhhC--CCCEEEEccccHHHHHHHHHHH
Confidence 9999999876554321 122234789999986 223456678888888998 5677666654444444444445
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++ ||.+...
T Consensus 273 ~~-g~~~~~~ 281 (295)
T PF06325_consen 273 KQ-GFELVEE 281 (295)
T ss_dssp HT-TEEEEEE
T ss_pred HC-CCEEEEE
Confidence 55 9998765
No 6
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.71 E-value=4.2e-17 Score=135.87 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=95.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..|++|||+|||-|+++..+|+.|++|+++|+++ ++++.++..+..+++.+.......++.... .++||+|++.+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se--~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~--~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASE--KPIEVAKLHALESGVNIDYRQATVEDLASA--GGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCCh--HHHHHHHHhhhhccccccchhhhHHHHHhc--CCCccEEEEhhH
Confidence 6889999999999999999999999999999997 699999999999998866555444433221 269999999999
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHH
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLI 187 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~ 187 (241)
+.|.++++.+++.+.+++| |+|.++++...|+.....
T Consensus 134 lEHv~dp~~~~~~c~~lvk--P~G~lf~STinrt~ka~~ 170 (243)
T COG2227 134 LEHVPDPESFLRACAKLVK--PGGILFLSTINRTLKAYL 170 (243)
T ss_pred HHccCCHHHHHHHHHHHcC--CCcEEEEeccccCHHHHH
Confidence 9999999999999999998 778888887776665433
No 7
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.70 E-value=1e-15 Score=129.19 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=128.1
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCC--ce
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKL--NC 121 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~ 121 (241)
..|++.=-.+++|+.|... ...++|||||||+|++|+++|++ . ++++++++.+ ++.+.+++|++.|++ ++
T Consensus 24 ~~~~~~~~DaiLL~~~~~~----~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~--~~a~~A~~nv~ln~l~~ri 97 (248)
T COG4123 24 RCGFRYGTDAILLAAFAPV----PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE--EAAEMAQRNVALNPLEERI 97 (248)
T ss_pred CCccccccHHHHHHhhccc----ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH--HHHHHHHHHHHhCcchhce
Confidence 4778888899999999753 23679999999999999999998 4 6999999995 799999999999987 56
Q ss_pred EEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 122 RVMGLTWGFLDASIFDLNPNIILGADVFYDAS------------------AFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 122 ~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
++.+.|..+........+||+|++++++|... +++.+++...++|+ ++|.+.+.++....
T Consensus 98 ~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk--~~G~l~~V~r~erl 175 (248)
T COG4123 98 QVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK--PGGRLAFVHRPERL 175 (248)
T ss_pred eEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc--CCCEEEEEecHHHH
Confidence 77777776665444444799999999998753 58999999999998 55666666555333
Q ss_pred hhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEeccC
Q 026274 184 HHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHE 230 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~~ 230 (241)
. .+..++++++|.+.++...++.. .-..++-+++..+..+
T Consensus 176 ~-ei~~~l~~~~~~~k~i~~V~p~~------~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 176 A-EIIELLKSYNLEPKRIQFVYPKI------GKAANRVLVEAIKGGK 215 (248)
T ss_pred H-HHHHHHHhcCCCceEEEEecCCC------CCcceEEEEEEecCCC
Confidence 2 34556789999998884433322 3334566666655443
No 8
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.69 E-value=5.7e-16 Score=130.79 Aligned_cols=144 Identities=31% Similarity=0.534 Sum_probs=112.0
Q ss_pred eEEEEeccCcCCcceEEeccHHHHHHHHHhccC------CC-----CCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCC
Q 026274 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RF-----SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 35 ~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~------~~-----~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~ 102 (241)
.++.+......+.+..+|+++-.++.++..+.. .. +..+|||||+|||+.|+.+|. .+++|+.||...
T Consensus 40 ~~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~ 119 (248)
T KOG2793|consen 40 SKTVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK 119 (248)
T ss_pred eeeecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh
Confidence 344444445678899999999999999887654 22 245699999999999999999 578999999986
Q ss_pred cHHHHHHHHHHHHHc-----C--CceEEEEeecCCCCcCcC-CCC-CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeE
Q 026274 103 RIEVLKNMRRVCEMN-----K--LNCRVMGLTWGFLDASIF-DLN-PNIILGADVFYDASAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 103 ~~~~l~~~~~n~~~n-----~--~~~~~~~l~w~~~~~~~~-~~~-fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~ 173 (241)
.+.++..|...| + ..+.+..++|++...... ... +|+|+++||+|++...+.|+.++..+|..+ ++
T Consensus 120 ---~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~--~~ 194 (248)
T KOG2793|consen 120 ---VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKD--GT 194 (248)
T ss_pred ---hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcC--Ce
Confidence 666665554433 2 267889999998764322 224 899999999999999999999999999844 37
Q ss_pred EEEEeeccCc
Q 026274 174 FITTYHNRSG 183 (241)
Q Consensus 174 ~~~~~~~r~~ 183 (241)
+++.++.|..
T Consensus 195 i~l~~~lr~~ 204 (248)
T KOG2793|consen 195 IFLAYPLRRD 204 (248)
T ss_pred EEEEEecccc
Confidence 8888888775
No 9
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.69 E-value=1.5e-15 Score=122.55 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~ 129 (241)
+++.+|++++... ++.+|||+|||+|.+|+.+++.+. +|+++|+++ .+++.+++|++.|+.. +++...|+.
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERNGLENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHTTCTTEEEEESSTT
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCcccccccccccc
Confidence 5777888888765 667899999999999999999876 599999995 7999999999999987 666665554
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 195 (241)
+ ...+.+||+|+++.+++.-. ....+++...++|+ ++|.+++.+....... ..+.+.+|
T Consensus 92 ~---~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk--~~G~l~lv~~~~~~~~--~~l~~~f~ 155 (170)
T PF05175_consen 92 E---ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK--PGGRLFLVINSHLGYE--RLLKELFG 155 (170)
T ss_dssp T---TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE--EEEEEEEEEETTSCHH--HHHHHHHS
T ss_pred c---cccccceeEEEEccchhcccccchhhHHHHHHHHHHhcc--CCCEEEEEeecCCChH--HHHHHhcC
Confidence 4 33357999999999977654 37889999999998 6676665554433322 22445555
No 10
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.67 E-value=4e-15 Score=120.86 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=104.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
+..|..++. ..++.+|||+|||+|.+++.+++.+.+|+++|+++ ++++.+++|+..++.++++...++.+.
T Consensus 8 ~~~l~~~l~----~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~--- 78 (179)
T TIGR00537 8 SLLLEANLR----ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINP--FAVKELRENAKLNNVGLDVVMTDLFKG--- 78 (179)
T ss_pred HHHHHHHHH----hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEcccccc---
Confidence 455555553 34557899999999999999999988999999995 799999999999988877777776543
Q ss_pred cCCCCCcEEEEcCCcCCCcc---------------------HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHH
Q 026274 135 IFDLNPNIILGADVFYDASA---------------------FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVK 193 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~---------------------~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~ 193 (241)
...+||+|+++.++++... ...+++.+.++|+ +||.+++.............++++
T Consensus 79 -~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 79 -VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK--EGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred -cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC--CCCEEEEEEeccCChHHHHHHHHh
Confidence 2348999999988765432 4678899999998 556665555444444455666788
Q ss_pred cCCEEEEEec
Q 026274 194 WGLKCVKLVD 203 (241)
Q Consensus 194 ~g~~~~~i~~ 203 (241)
.||+.+.+..
T Consensus 156 ~gf~~~~~~~ 165 (179)
T TIGR00537 156 RGFRYEIVAE 165 (179)
T ss_pred CCCeEEEEEE
Confidence 9999988843
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=5.8e-15 Score=130.30 Aligned_cols=137 Identities=17% Similarity=0.250 Sum_probs=102.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|.++..+++.|++|+++|.++ ++++.+++++..++. ++.+...+..+. +..+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~--~~i~~Ar~~~~~~~~~~~i~~~~~dae~l--~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVD--KNVKIARLHADMDPVTSTIEYLCTTAEKL--ADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCcccceeEEecCHHHh--hhccCCCCEEEEh
Confidence 4677999999999999999999999999999995 799999988776543 455555544332 2234689999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC-----------------------------chhHHHHHHHHcCCE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS-----------------------------GHHLIEFLMVKWGLK 197 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-----------------------------~~~~~~~~~~~~g~~ 197 (241)
++++|..+...+++.+.++|+ |||.+++....+. ....+..++++.||+
T Consensus 206 ~vLeHv~d~~~~L~~l~r~Lk--PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTI--PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcC--CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 999999999999999999998 6666665532221 223455567889999
Q ss_pred EEEEecCCCCCCccc
Q 026274 198 CVKLVDGFSFLPHYK 212 (241)
Q Consensus 198 ~~~i~~~~~~~p~~~ 212 (241)
+..+.. +.+.|...
T Consensus 284 i~~~~G-~~~~p~~~ 297 (322)
T PLN02396 284 VKEMAG-FVYNPITG 297 (322)
T ss_pred EEEEee-eEEcCcCC
Confidence 988722 33344443
No 12
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=2e-13 Score=111.87 Aligned_cols=139 Identities=22% Similarity=0.291 Sum_probs=103.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
++.+|||+|||+|..++.+++. +++|+++|.++ +|++.+++|++.++.+ +++...+..+.. . ..+||+|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~--~~l~~A~~~~~~~~l~~i~~~~~d~~~~~--~-~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLG--KKIAFLREVAAELGLKNVTVVHGRAEEFG--Q-EEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHcCCCCEEEEeccHhhCC--C-CCCccEEEEc
Confidence 3789999999999999999874 46999999996 6999999999998874 777777665532 1 4589999986
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIV 226 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~ 226 (241)
. ...++.+++.+.++|+ +||.+++.... .....+..+.++.|+.+..... +. -.++.+..++..|+
T Consensus 120 ~----~~~~~~~l~~~~~~Lk--pGG~lv~~~~~-~~~~~l~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ 185 (187)
T PRK00107 120 A----VASLSDLVELCLPLLK--PGGRFLALKGR-DPEEEIAELPKALGGKVEEVIE-LT------LPGLDGERHLVIIR 185 (187)
T ss_pred c----ccCHHHHHHHHHHhcC--CCeEEEEEeCC-ChHHHHHHHHHhcCceEeeeEE-Ee------cCCCCCcEEEEEEe
Confidence 4 3567899999999998 66666655433 3344556677888999887733 11 23566677777665
Q ss_pred e
Q 026274 227 L 227 (241)
Q Consensus 227 ~ 227 (241)
+
T Consensus 186 ~ 186 (187)
T PRK00107 186 K 186 (187)
T ss_pred c
Confidence 4
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=3.9e-14 Score=121.41 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=85.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++.+|||+|||+|..+..+++.|.+|+++|+++ +|++.+++++...+. ++++...+..+.. +..+.+||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~--~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSA--EMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCCCCEEEehh
Confidence 467999999999999999999999999999995 799999999887765 4566665654432 22346899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++++..+...+++.+.++|+ |||.+++.+
T Consensus 121 vl~~~~~~~~~l~~~~~~Lk--pgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLR--PGGALSLMF 149 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcC--CCeEEEEEE
Confidence 99999999999999999998 667665543
No 14
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.59 E-value=9.5e-14 Score=118.77 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=111.3
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....|.+.+.+..++|. .+.+..+.+++... ..++++|||+|||+|.+++.+++.|+ +|+++|+++ .+++.++
T Consensus 86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~--~~l~~A~ 159 (250)
T PRK00517 86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP--QAVEAAR 159 (250)
T ss_pred CeEEEEECCCCccCCCC--CHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 44667777777667776 58888888888754 34678999999999999999999888 599999995 6999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|+..|++...+. +.-+ +.+||+|+++-. ...+..+++.+.++|+ +||.++++.........+...+
T Consensus 160 ~n~~~~~~~~~~~-~~~~-------~~~fD~Vvani~---~~~~~~l~~~~~~~Lk--pgG~lilsgi~~~~~~~v~~~l 226 (250)
T PRK00517 160 ENAELNGVELNVY-LPQG-------DLKADVIVANIL---ANPLLELAPDLARLLK--PGGRLILSGILEEQADEVLEAY 226 (250)
T ss_pred HHHHHcCCCceEE-EccC-------CCCcCEEEEcCc---HHHHHHHHHHHHHhcC--CCcEEEEEECcHhhHHHHHHHH
Confidence 9999998742221 1111 127999998622 3346778889999998 6777777654444444555667
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++.||.....
T Consensus 227 ~~~Gf~~~~~ 236 (250)
T PRK00517 227 EEAGFTLDEV 236 (250)
T ss_pred HHCCCEEEEE
Confidence 8899998776
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=1.1e-14 Score=108.63 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=80.9
Q ss_pred CCCeEEEecCCCCHHHHHHHH--hCCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||||||+|..++.+++ .+++|+++|+++ ++++.+++++...+ .++++...++ .. ......+||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~-~~-~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDA-EF-DPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCC-HG-GTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECcc-cc-CcccCCCCCEEEE
Confidence 468999999999999999999 688999999995 79999999995544 4678888777 21 2223457999999
Q ss_pred cC-CcCC---CccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 AD-VFYD---ASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~d-vly~---~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.. +..+ .+....+++.+.++|+ |||.+++..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~--pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLK--PGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEE--EEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcC--CCcEEEEEE
Confidence 98 4332 2456888999999998 678877764
No 16
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.58 E-value=3.6e-15 Score=125.31 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=80.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE--EEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.|++|||+|||+|++|.-||+.|++|+++|.++ +|++.+++....+-.... .+.+...+...+...++||.|++++
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~--~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASD--DMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccH--HHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 468899999999999999999999999999995 699999887443322111 1122222222233345799999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
++.|..+++.+++.+.++|+| +|.++++.-.|
T Consensus 167 vleHV~dp~~~l~~l~~~lkP--~G~lfittinr 198 (282)
T KOG1270|consen 167 VLEHVKDPQEFLNCLSALLKP--NGRLFITTINR 198 (282)
T ss_pred HHHHHhCHHHHHHHHHHHhCC--CCceEeeehhh
Confidence 999999999999999999994 45555543343
No 17
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.58 E-value=1.1e-13 Score=120.73 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=108.2
Q ss_pred CceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHH
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....|.+...+..++|.+ +.+.+..+++.... .++++|||+|||+|.+++.+++.|+ +|+++|+++ .+++.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~--~al~~a~ 199 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDP--LAVESAR 199 (288)
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 456677777766666655 88888778776542 3678999999999999999999887 899999995 6999999
Q ss_pred HHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 112 ~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
+|+..|+....+... ..+. ......+||+|+++-. ...+..++..+.++|+ |||.++++.-.+.....+...+
T Consensus 200 ~n~~~n~~~~~~~~~-~~~~-~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~Lk--pgG~li~sgi~~~~~~~v~~~~ 272 (288)
T TIGR00406 200 KNAELNQVSDRLQVK-LIYL-EQPIEGKADVIVANIL---AEVIKELYPQFSRLVK--PGGWLILSGILETQAQSVCDAY 272 (288)
T ss_pred HHHHHcCCCcceEEE-eccc-ccccCCCceEEEEecC---HHHHHHHHHHHHHHcC--CCcEEEEEeCcHhHHHHHHHHH
Confidence 999999875332211 1111 1223458999998633 3355678899999998 5676666544433333344444
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++. |+....
T Consensus 273 ~~~-f~~~~~ 281 (288)
T TIGR00406 273 EQG-FTVVEI 281 (288)
T ss_pred Hcc-CceeeE
Confidence 444 776655
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2.8e-14 Score=112.84 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCCHHHHHHHH-h--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++.+|||+|||+|..+..+++ . +++++++|+++ +|++.++.+++.++. ++++...|+.+.... ...+||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEE
Confidence 567999999999999999994 4 56999999995 799999999988877 589999888874322 2368999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+.++++..+...+++.+.++|+ ++|.+++....
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk--~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLK--PGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEE--EEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcC--CCcEEEEEECC
Confidence 9999999999999999999998 56766666544
No 19
>PRK14968 putative methyltransferase; Provisional
Probab=99.58 E-value=2.5e-13 Score=110.37 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=103.6
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l 126 (241)
..|+.+.++.+++.. .++++|||+|||+|..+..+++.+++|+++|+++ ++++.+++|+..++.. +.+...
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINP--YAVECAKCNAKLNNIRNNGVEVIRS 80 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCH--HHHHHHHHHHHHcCCCCcceEEEec
Confidence 346777888887753 4677999999999999999999988999999995 6999999999888764 666666
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC---------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchh
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA---------------------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHH 185 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~---------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~ 185 (241)
|+.+. ..+.+||+|+++.+++.. ..+..+++.+.++|+ ++|.+++.........
T Consensus 81 d~~~~---~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk--~gG~~~~~~~~~~~~~ 155 (188)
T PRK14968 81 DLFEP---FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK--PGGRILLLQSSLTGED 155 (188)
T ss_pred ccccc---ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC--CCeEEEEEEcccCCHH
Confidence 65442 233479999998776542 124668899999998 4454444433333334
Q ss_pred HHHHHHHHcCCEEEEE
Q 026274 186 LIEFLMVKWGLKCVKL 201 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i 201 (241)
....++.+.||+...+
T Consensus 156 ~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 156 EVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHCCCeeeee
Confidence 4566778899987765
No 20
>PRK14967 putative methyltransferase; Provisional
Probab=99.57 E-value=1.8e-13 Score=115.09 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=103.6
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
.+..+++++.... ..++.+|||+|||+|.+++.+++.++ +|+++|+++ ++++.+++|+..++.++.+...++.+.
T Consensus 21 ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~~~~~~d~~~~- 96 (223)
T PRK14967 21 DTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVDVDVRRGDWARA- 96 (223)
T ss_pred cHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCeeEEEECchhhh-
Confidence 5677888876532 34567999999999999999999877 999999995 699999999998888877777776543
Q ss_pred cCcCCCCCcEEEEcCCcCCCc---------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH
Q 026274 133 ASIFDLNPNIILGADVFYDAS---------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM 191 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~---------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~ 191 (241)
..+.+||+|+++.+++... .+..+++.+.++|+ +||.+++.+............+
T Consensus 97 --~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk--~gG~l~~~~~~~~~~~~~~~~l 172 (223)
T PRK14967 97 --VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA--PGGSLLLVQSELSGVERTLTRL 172 (223)
T ss_pred --ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC--CCcEEEEEEecccCHHHHHHHH
Confidence 2345899999987644321 14567888899998 5666666554443333344456
Q ss_pred HHcCCEEEEE
Q 026274 192 VKWGLKCVKL 201 (241)
Q Consensus 192 ~~~g~~~~~i 201 (241)
++.||.+..+
T Consensus 173 ~~~g~~~~~~ 182 (223)
T PRK14967 173 SEAGLDAEVV 182 (223)
T ss_pred HHCCCCeEEE
Confidence 7789887776
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.56 E-value=6.3e-14 Score=115.58 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=81.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..++.+++.|.+|+++|+++ .|++.+++++..+++++.+...+.... + .+.+||+|+++.+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~--~-~~~~fD~I~~~~~ 103 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINAA--A-LNEDYDFIFSTVV 103 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchhc--c-ccCCCCEEEEecc
Confidence 3567999999999999999999999999999995 699999999888887766655554332 1 2357999999999
Q ss_pred cCCC--ccHHHHHHHHHHHhhcCCCeE-EEE
Q 026274 149 FYDA--SAFDDLFATITYLLQSSPGSV-FIT 176 (241)
Q Consensus 149 ly~~--~~~~~ll~~~~~lL~~~~~~~-~~~ 176 (241)
+++. .....+++.+.++|+ |||. +++
T Consensus 104 ~~~~~~~~~~~~l~~~~~~Lk--pgG~lli~ 132 (195)
T TIGR00477 104 FMFLQAGRVPEIIANMQAHTR--PGGYNLIV 132 (195)
T ss_pred cccCCHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 8765 467899999999998 5554 444
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=5e-13 Score=119.25 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=84.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|..+..+++. |++|+++|+++ .+++.+++++..++. ++++...|..+. +..+++||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~--~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP--VQAARANALAAAQGLSDKVSFQVADALNQ--PFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEcCcccC--CCCCCCccEEEE
Confidence 46789999999999999999986 78999999995 699999999888775 467776666543 334568999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
..+++|..+...+++.+.++|+ |||.+++
T Consensus 193 ~~~~~h~~d~~~~l~e~~rvLk--pGG~lvi 221 (340)
T PLN02244 193 MESGEHMPDKRKFVQELARVAA--PGGRIII 221 (340)
T ss_pred CCchhccCCHHHHHHHHHHHcC--CCcEEEE
Confidence 9999999999999999999998 5555444
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=1.2e-13 Score=114.14 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=80.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||+|||+|..++.+|+.|++|+++|+|+ +|++.+++++..++.. +++...++.+.. .+.+||+|+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~--~~i~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~I~~~~ 103 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNP--MSIANLERIKAAENLDNLHTAVVDLNNLT---FDGEYDFILSTV 103 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHcCCCcceEEecChhhCC---cCCCcCEEEEec
Confidence 4567999999999999999999999999999995 7999999998887764 566666654431 245799999999
Q ss_pred CcCCC--ccHHHHHHHHHHHhhcCCCeE
Q 026274 148 VFYDA--SAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 148 vly~~--~~~~~ll~~~~~lL~~~~~~~ 173 (241)
++++. .....+++.+.++|+ |||.
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk--pgG~ 129 (197)
T PRK11207 104 VLMFLEAKTIPGLIANMQRCTK--PGGY 129 (197)
T ss_pred chhhCCHHHHHHHHHHHHHHcC--CCcE
Confidence 98764 367899999999998 4554
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.54 E-value=4.4e-13 Score=118.68 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=102.1
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHH--cCCceEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~--n~~~~~~~~l 126 (241)
..|++....... ..+....++++|||||||+|..+..++..|+ .|+++|.++ .++...+..... +..++.+...
T Consensus 103 ~ew~s~~k~~~l-~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~--~~l~q~~a~~~~~~~~~~i~~~~~ 179 (322)
T PRK15068 103 TEWRSDWKWDRV-LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ--LFLCQFEAVRKLLGNDQRAHLLPL 179 (322)
T ss_pred ceehHHhHHHHH-HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHhcCCCCCeEEEeC
Confidence 458776664433 3333446789999999999999999999887 699999995 466544332222 2345677766
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee-------------ccC----------c
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH-------------NRS----------G 183 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~-------------~r~----------~ 183 (241)
+..+. +. +.+||+|++..++||..+...+++.+.+.|+ +||.+++..- .|+ +
T Consensus 180 d~e~l--p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk--pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps 254 (322)
T PRK15068 180 GIEQL--PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV--PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPS 254 (322)
T ss_pred CHHHC--CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcC--CCcEEEEEEEEecCCCccccCchhHHhcCccceeCCC
Confidence 66544 22 5689999999999999999999999999998 5565554310 011 1
Q ss_pred hhHHHHHHHHcCCEEEEEec
Q 026274 184 HHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 184 ~~~~~~~~~~~g~~~~~i~~ 203 (241)
......++++.||....+.+
T Consensus 255 ~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 255 VPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred HHHHHHHHHHcCCceEEEEe
Confidence 22345567899999888744
No 25
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.6e-12 Score=104.73 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=107.4
Q ss_pred ccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 65 ~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
......|+.|+|||||||.+|+.++.+|+ .|+++|+++ ++++.+++|+.....++.+...|..+. ..++|.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g~v~f~~~dv~~~-----~~~~dtv 112 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLGDVEFVVADVSDF-----RGKFDTV 112 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCCceEEEEcchhhc-----CCccceE
Confidence 34667899999999999999999999998 899999995 799999999999877888877666543 4579999
Q ss_pred EEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE-ecCCCCCCcccccccCC--
Q 026274 144 LGADVFYD--ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL-VDGFSFLPHYKARELNG-- 218 (241)
Q Consensus 144 l~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i-~~~~~~~p~~~~~~~~~-- 218 (241)
+.++++=- ...-.+++....++- -++.+.++..+....+.+.+..|+.+... ...|..++.+..+....
T Consensus 113 imNPPFG~~~rhaDr~Fl~~Ale~s------~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~fH~k~~~~ 186 (198)
T COG2263 113 IMNPPFGSQRRHADRPFLLKALEIS------DVVYSIHKAGSRDFVEKFAADLGGTVTHIERARFPIPRTYPFHRKRVRR 186 (198)
T ss_pred EECCCCccccccCCHHHHHHHHHhh------heEEEeeccccHHHHHHHHHhcCCeEEEEEEEEEecCccCchhhheeee
Confidence 99888743 223344444444442 23444455566777788889999999888 34455555554444433
Q ss_pred -CeEEEEEEe
Q 026274 219 -NIQLAEIVL 227 (241)
Q Consensus 219 -~~~l~~i~~ 227 (241)
.+.++.+.+
T Consensus 187 I~v~i~r~~k 196 (198)
T COG2263 187 IEVDIFRFEK 196 (198)
T ss_pred eeEEEEEEEe
Confidence 445555543
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.52 E-value=5.8e-14 Score=100.95 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=76.1
Q ss_pred EEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc
Q 026274 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS 153 (241)
Q Consensus 75 LElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~ 153 (241)
||+|||+|..+..+++. +.+|+++|+++ ++++.++++....+.. +...+..+. +..+.+||+|++..++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~--~~~~d~~~l--~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVS--FRQGDAEDL--PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEE--EEESBTTSS--SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCch--heeehHHhC--ccccccccccccccceeecc
Confidence 89999999999999999 77999999995 6999999877655544 666666654 45567999999999999999
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 154 AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 154 ~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+...+++.+.++|+ |+|.+++
T Consensus 75 ~~~~~l~e~~rvLk--~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLK--PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEE--EEEEEEE
T ss_pred CHHHHHHHHHHHcC--cCeEEeC
Confidence 99999999999999 6666553
No 27
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.51 E-value=8.1e-13 Score=116.29 Aligned_cols=148 Identities=12% Similarity=0.140 Sum_probs=101.4
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHH--HcCCceEEEEee
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE--MNKLNCRVMGLT 127 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~~l~ 127 (241)
.|.+......++.. ....++++|||+|||+|..+..++..|+ .|+++|.++ .|+..++...+ .+...+.+..++
T Consensus 103 e~~s~~~~~~~l~~-l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~--~ml~q~~~~~~~~~~~~~v~~~~~~ 179 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV--LFLCQFEAVRKLLDNDKRAILEPLG 179 (314)
T ss_pred HHHHHHHHHHHHHh-cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHHhccCCCeEEEECC
Confidence 47766665555543 3456789999999999999999998887 799999996 57765433222 223345555555
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee-------------ccC----------ch
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH-------------NRS----------GH 184 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~-------------~r~----------~~ 184 (241)
..+... ..+||+|++..++||..+...+++.++++|+ +||.+++... .|+ ..
T Consensus 180 ie~lp~---~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk--pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~ 254 (314)
T TIGR00452 180 IEQLHE---LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV--IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSV 254 (314)
T ss_pred HHHCCC---CCCcCEEEEcchhhccCCHHHHHHHHHHhcC--CCCEEEEEEEEecCccccccCchHHHHhccccccCCCH
Confidence 444321 2479999999999999999999999999998 4555443310 010 11
Q ss_pred hHHHHHHHHcCCEEEEEecCCC
Q 026274 185 HLIEFLMVKWGLKCVKLVDGFS 206 (241)
Q Consensus 185 ~~~~~~~~~~g~~~~~i~~~~~ 206 (241)
..+...+++.||+...+.+...
T Consensus 255 ~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 255 SALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred HHHHHHHHHCCCeEEEEEeccC
Confidence 2334457899999988765444
No 28
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=1.1e-12 Score=114.38 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=81.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||+|||+|..++.+++.|.+|+++|+++ .+++.+++++..+++++++...|.... ..+++||+|+++.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~--~ai~~~~~~~~~~~l~v~~~~~D~~~~---~~~~~fD~I~~~~v 193 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQ--QSLENLQEIAEKENLNIRTGLYDINSA---SIQEEYDFILSTVV 193 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCceEEEEechhcc---cccCCccEEEEcch
Confidence 3456999999999999999999999999999995 699999999998888777766665432 23568999999999
Q ss_pred cCCC--ccHHHHHHHHHHHhhcCCCeE
Q 026274 149 FYDA--SAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 149 ly~~--~~~~~ll~~~~~lL~~~~~~~ 173 (241)
+++. +....+++.+.++|+ +||.
T Consensus 194 l~~l~~~~~~~~l~~~~~~Lk--pgG~ 218 (287)
T PRK12335 194 LMFLNRERIPAIIKNMQEHTN--PGGY 218 (287)
T ss_pred hhhCCHHHHHHHHHHHHHhcC--CCcE
Confidence 8864 478899999999998 4554
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=1.3e-12 Score=121.47 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=85.5
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..++.+|||+|||+|..++.+++. +++|+++|+|+ ++++.+++|+.....++.+...|+... +..+.+||+|++.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I~s~ 339 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIGRKCSVEFEVADCTKK--TYPDNSFDVIYSR 339 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhcCCCceEEEEcCcccC--CCCCCCEEEEEEC
Confidence 346779999999999999998875 77999999995 699999988765555677777777653 2234589999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++|..+.+.+++.+.++|+ |||.+++.
T Consensus 340 ~~l~h~~d~~~~l~~~~r~Lk--pgG~l~i~ 368 (475)
T PLN02336 340 DTILHIQDKPALFRSFFKWLK--PGGKVLIS 368 (475)
T ss_pred CcccccCCHHHHHHHHHHHcC--CCeEEEEE
Confidence 999999999999999999998 56666655
No 30
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.50 E-value=1.2e-13 Score=109.01 Aligned_cols=100 Identities=24% Similarity=0.294 Sum_probs=77.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..++++|||+|||+|..+..+++.|.+|+++|+++ .+++. ........+-. .....+.+||+|++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~--~~~~~---------~~~~~~~~~~~--~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISP--QMIEK---------RNVVFDNFDAQ--DPPFPDGSFDLIICND 86 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSH--HHHHH---------TTSEEEEEECH--THHCHSSSEEEEEEES
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHhh---------hhhhhhhhhhh--hhhccccchhhHhhHH
Confidence 45778999999999999999999999999999995 46655 22222222111 1122356899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
+++|.++...+++.+.++|+ |||.+++....+.
T Consensus 87 ~l~~~~d~~~~l~~l~~~Lk--pgG~l~~~~~~~~ 119 (161)
T PF13489_consen 87 VLEHLPDPEEFLKELSRLLK--PGGYLVISDPNRD 119 (161)
T ss_dssp SGGGSSHHHHHHHHHHHCEE--EEEEEEEEEEBTT
T ss_pred HHhhcccHHHHHHHHHHhcC--CCCEEEEEEcCCc
Confidence 99999999999999999999 6687777766553
No 31
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=1.7e-12 Score=116.82 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc----eEEEEe
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRVMGL 126 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~l 126 (241)
.++.+|.+++.. ..+.+|||||||+|.+|+.+++.+ ++|+++|+|+ .|++.+++|++.|+.. +++.
T Consensus 215 ~GtrllL~~lp~----~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~--~Av~~A~~N~~~n~~~~~~~v~~~-- 286 (378)
T PRK15001 215 IGARFFMQHLPE----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP--MAVASSRLNVETNMPEALDRCEFM-- 286 (378)
T ss_pred hHHHHHHHhCCc----ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCcccCceEEEE--
Confidence 344555555432 234589999999999999999974 5999999995 6999999999988743 3443
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC-----ccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA-----SAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~-----~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+++......+.+||+|+++.+++.. .....+++...++|+ +||.+++..
T Consensus 287 -~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk--pGG~L~iV~ 340 (378)
T PRK15001 287 -INNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK--INGELYIVA 340 (378)
T ss_pred -EccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc--cCCEEEEEE
Confidence 3433333334589999998887653 235678888999998 566666554
No 32
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.50 E-value=7.5e-13 Score=122.04 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=109.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA 133 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~ 133 (241)
+..|.+.+.......++.+|||+|||+|.+++.+|+.+.+|+++|+++ +|++.+++|++.|+. ++++...|+.+...
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVE--AMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 455666665544445678999999999999999999988999999995 799999999998886 57888888765322
Q ss_pred C--cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCC
Q 026274 134 S--IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLP 209 (241)
Q Consensus 134 ~--~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p 209 (241)
. ..+.+||+|++..+ |.- ....++.+.++ .++.++|+++.+.........+ .+.||+++.+ .|.|+.++
T Consensus 360 ~~~~~~~~fD~Vi~dPP-r~g--~~~~~~~l~~~---~~~~ivyvSCnp~tlaRDl~~L-~~~gY~l~~i~~~DmFP~T~ 432 (443)
T PRK13168 360 DQPWALGGFDKVLLDPP-RAG--AAEVMQALAKL---GPKRIVYVSCNPATLARDAGVL-VEAGYRLKRAGMLDMFPHTG 432 (443)
T ss_pred hhhhhcCCCCEEEECcC-CcC--hHHHHHHHHhc---CCCeEEEEEeChHHhhccHHHH-hhCCcEEEEEEEeccCCCCC
Confidence 1 22357999997544 331 33445555553 4788899988776655555554 3578999887 88888887
Q ss_pred cccc
Q 026274 210 HYKA 213 (241)
Q Consensus 210 ~~~~ 213 (241)
|.+.
T Consensus 433 HvE~ 436 (443)
T PRK13168 433 HVES 436 (443)
T ss_pred cEEE
Confidence 7753
No 33
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.49 E-value=1.1e-12 Score=107.04 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=89.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|.+++.++..+ ++|+++|.++ +|++.+++|++.++. ++++...++.+.. ...+||+|++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~--~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---~~~~fD~I~s 115 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNH--KKVAFLREVKAELGLNNVEIVNGRAEDFQ---HEEQFDVITS 115 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHhCCCCeEEEecchhhcc---ccCCccEEEe
Confidence 357899999999999999998764 4899999996 699999999988876 4777777776531 2458999987
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH---HHHcCCEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL---MVKWGLKCVKL 201 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~~~i 201 (241)
.. ..+++.+++.+.++|+ +||.+++.+..... .....+ +...|++....
T Consensus 116 ~~----~~~~~~~~~~~~~~Lk--pgG~lvi~~~~~~~-~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 116 RA----LASLNVLLELTLNLLK--VGGYFLAYKGKKYL-DEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred hh----hhCHHHHHHHHHHhcC--CCCEEEEEcCCCcH-HHHHHHHHhhhhcCceEeec
Confidence 54 3457788899999998 66766665443332 223333 33478887776
No 34
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.49 E-value=1.6e-12 Score=109.73 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=93.6
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~ 136 (241)
.-.+|+.......++.+|||||||+|.++..+++.+++|+++|.++ ++++.+++++..++..+.+...++.+... ..
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ 111 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASE--ENIEVARLHALESGLKIDYRQTTAEELAA-EH 111 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCH--HHHHHHHHHHHHcCCceEEEecCHHHhhh-hc
Confidence 3346666655556788999999999999999999999999999995 69999999888777777776666654421 12
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
..+||+|+++.++++..+...+++.+.++|+ ++|.+++..
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~--~gG~l~v~~ 151 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVK--PGGLVFFST 151 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcC--CCcEEEEEe
Confidence 3589999999999999999999999999998 556665553
No 35
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.48 E-value=5e-13 Score=109.38 Aligned_cols=103 Identities=21% Similarity=0.262 Sum_probs=81.3
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
...++.++||||||.|..+++||++|..|+++|+|+ .+++.+++.++..+++++....|..+.. .+..||+|++.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~--~al~~l~~~a~~~~l~i~~~~~Dl~~~~---~~~~yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISP--VALEKLQRLAEEEGLDIRTRVADLNDFD---FPEEYDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSH--HHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHhhcCceeEEEEecchhcc---ccCCcCEEEEE
Confidence 345678999999999999999999999999999995 6999999999999999988888876543 34589999988
Q ss_pred CCcCC--CccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 147 DVFYD--ASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 147 dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
-|+++ ++..+.+++.++..++ |||++++
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~--pGG~~li 131 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATK--PGGYNLI 131 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEE--EEEEEEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcC--CcEEEEE
Confidence 77765 5678889999999998 5665443
No 36
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.47 E-value=1.9e-12 Score=111.57 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
+.+..-+..+.......++.+|||+|||+|..+..+++. +++|+++|+++ ++++.++++... ..++.+...+..+.
T Consensus 35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~--~~~~~a~~~~~~-~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICE--KMVNIAKLRNSD-KNKIEFEANDILKK 111 (263)
T ss_pred CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCH--HHHHHHHHHcCc-CCceEEEECCcccC
Confidence 333434444544445567789999999999999888764 67999999995 699988887654 33466666655432
Q ss_pred CcCcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 132 DASIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+..+.+||+|++.++++|.. +...+++.+.++|+ |||.+++.
T Consensus 112 --~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~Lk--PGG~lvi~ 155 (263)
T PTZ00098 112 --DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLK--PNGILLIT 155 (263)
T ss_pred --CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 33456899999999998864 78899999999998 55655544
No 37
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.47 E-value=1.5e-12 Score=115.02 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.++.+|||+|||+|.+++.+|+.+.+|+++|+++ ++++.+++|++.+++ ++++...|..+.... ...+||+|+..+
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~--~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~dP 248 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISA--EAIACAKQSAAELGLTNVQFQALDSTQFATA-QGEVPDLVLVNP 248 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEECC
Confidence 3567999999999999999999999999999995 799999999999987 477777776543221 234799999876
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCCcccc
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLPHYKA 213 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p~~~~ 213 (241)
+- ......+++.+.. .+++.++|+++.+.........+ .||++..+ .|.|+.++|.+.
T Consensus 249 Pr--~G~~~~~~~~l~~---~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~ 308 (315)
T PRK03522 249 PR--RGIGKELCDYLSQ---MAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEV 308 (315)
T ss_pred CC--CCccHHHHHHHHH---cCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccCCCCCeEEE
Confidence 62 2233445455444 34678999888776666555555 48888877 888888877653
No 38
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.46 E-value=3.6e-12 Score=109.12 Aligned_cols=141 Identities=16% Similarity=0.086 Sum_probs=99.2
Q ss_pred cHHHHHHHHHhccC-CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 54 CSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 54 ~s~~L~~~l~~~~~-~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
.+..|.+.+..... ...+.+|||+|||+|.+++.+++. +.+|+++|+++ .+++.+++|+..|+. ++...|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~~~--~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADAGG--TVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC--EEEEeechh
Confidence 45666666554322 123458999999999999999875 45999999995 799999999998874 566677654
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 131 LDASIFDLNPNIILGADVFYDAS--------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
........+||+|+++.+..-.. .+..+++...++|+ ++|.+++.+...+.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~--~gG~l~l~~~~~~~- 221 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA--PGGHLLVETSERQA- 221 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC--CCCEEEEEECcchH-
Confidence 32221234799999887754211 14577788889998 66777777665444
Q ss_pred hHHHHHHHHcCCEEEEE
Q 026274 185 HLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 185 ~~~~~~~~~~g~~~~~i 201 (241)
..+..+++++||....+
T Consensus 222 ~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 222 PLAVEAFARAGLIARVA 238 (251)
T ss_pred HHHHHHHHHCCCCceee
Confidence 34555677889987776
No 39
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.46 E-value=5e-12 Score=114.31 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~ 130 (241)
+.+..+.+.+..... ++.+|||+|||+|.+++.+++. +++|+++|+|+ +|++.+++|++.++.++++...||.+
T Consensus 236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 556677777765422 4568999999999999999875 45999999995 79999999999988888888888854
Q ss_pred CCcCcCCCCCcEEEEcCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchh
Q 026274 131 LDASIFDLNPNIILGADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHH 185 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~ 185 (241)
...+ ...+||+|+++++..... .+..+++.+.+.|+ ++|.+++..... ...
T Consensus 312 ~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk--pgG~lilEiG~~-Q~e 387 (423)
T PRK14966 312 TDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA--EGGFLLLEHGFD-QGA 387 (423)
T ss_pred cccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC--CCcEEEEEECcc-HHH
Confidence 3211 134799999988753211 24567777788887 566666654443 234
Q ss_pred HHHHHHHHcCCEEEEE
Q 026274 186 LIEFLMVKWGLKCVKL 201 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i 201 (241)
....++++.||....+
T Consensus 388 ~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 388 AVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHCCCcEEEE
Confidence 4566667789876665
No 40
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=6.1e-12 Score=108.32 Aligned_cols=102 Identities=19% Similarity=0.067 Sum_probs=79.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHH----cCCceEEEEeecCCCCcCcCCCCC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM----NKLNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~----n~~~~~~~~l~w~~~~~~~~~~~f 140 (241)
..++.+|||+|||||..+..+++. + .+|+++|+++ +|++.++++... ...++++...+..+. +..+++|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~--~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l--p~~~~sf 146 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS--EQLAVAASRQELKAKSCYKNIEWIEGDATDL--PFDDCYF 146 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhhhhccCCCeEEEEcccccC--CCCCCCE
Confidence 345789999999999999988875 4 4899999995 799999876532 123566666665543 3445689
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
|+|+++.++++.++...+++.+.++|+ |||.++
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLk--pGG~l~ 179 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLK--PGSRVS 179 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcC--cCcEEE
Confidence 999999999999999999999999998 455443
No 41
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=4.7e-12 Score=109.98 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=94.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
+.+..|.+.+...... .+.+|||||||||.+++.+++.+. +|+++|+|+ ++++.+++|+..|++ ++.+...+|.
T Consensus 94 ~dTe~Lve~~l~~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~--~Al~~A~~Na~~~~l~~~~~~~~dlf 170 (280)
T COG2890 94 PDTELLVEAALALLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISP--DALALARENAERNGLVRVLVVQSDLF 170 (280)
T ss_pred CchHHHHHHHHHhhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCH--HHHHHHHHHHHHcCCccEEEEeeecc
Confidence 4455566664421111 111799999999999999999875 999999995 799999999999995 3333444665
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
+. . .++||+|++++++--.+ .+..++..+.+.|+ +++++++.+...+ .
T Consensus 171 ~~---~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~--~~g~l~le~g~~q-~ 243 (280)
T COG2890 171 EP---L-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK--PGGVLILEIGLTQ-G 243 (280)
T ss_pred cc---c-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC--CCcEEEEEECCCc-H
Confidence 43 2 23899999988763322 35667777888887 5677776654433 3
Q ss_pred hHHHHHHHHcC-CEEEEE
Q 026274 185 HLIEFLMVKWG-LKCVKL 201 (241)
Q Consensus 185 ~~~~~~~~~~g-~~~~~i 201 (241)
..+..+..+.| |.....
T Consensus 244 ~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 244 EAVKALFEDTGFFEIVET 261 (280)
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 44566666777 443333
No 42
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.45 E-value=4.5e-12 Score=106.10 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=92.1
Q ss_pred eccHHHHHHHHHhcc----CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEe
Q 026274 52 WPCSVILAEYVWQQR----YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGL 126 (241)
Q Consensus 52 W~~s~~L~~~l~~~~----~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l 126 (241)
|........|+.... ...++.+|||+|||+|..+..+++.+++++++|.++ .+++.+++++..++. ++++...
T Consensus 23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~~~~~ 100 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPLLKIEYRCT 100 (224)
T ss_pred HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCceEEEeC
Confidence 334444455555332 234688999999999999999999888999999995 699999999887776 5666666
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++.+..... ..+||+|+++.++++..+...+++.+.++|+ ++|.+++.
T Consensus 101 d~~~~~~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~--~gG~l~i~ 148 (224)
T TIGR01983 101 SVEDLAEKG-AKSFDVVTCMEVLEHVPDPQAFIRACAQLLK--PGGILFFS 148 (224)
T ss_pred CHHHhhcCC-CCCccEEEehhHHHhCCCHHHHHHHHHHhcC--CCcEEEEE
Confidence 554432221 3589999999999999999999999999998 45555554
No 43
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.45 E-value=2.2e-12 Score=116.54 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=101.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..+.+|||||||+|.+++.+|..+.+|+++|+++ .+++.+++|++.|+. ++++...+..+.... ...+||+|+..+
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEECC
Confidence 3567999999999999999999888999999995 699999999999987 567777666443211 123699999866
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCCcccc
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLPHYKA 213 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p~~~~ 213 (241)
+ | ....+.+++.+..+ .|+.++|+++.+.........+ .||+++.+ .|+|+.++|.+.
T Consensus 309 P-r-~G~~~~~l~~l~~~---~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 309 P-R-RGIGKELCDYLSQM---APKFILYSSCNAQTMAKDIAEL---SGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred C-C-CCCcHHHHHHHHhc---CCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEEeccCCCCCcEEE
Confidence 6 3 24556666666543 4788999998776655555555 58888887 888888877654
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.44 E-value=2.4e-11 Score=99.37 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=89.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..++.+|||+|||+|.+++.+++.+ .+|+++|+++ ++++.+++|+..++. ++++...+.. .. ...+||+|+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~n~~~~~~~~i~~~~~d~~---~~-~~~~~D~v~ 102 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP--DALRLIKENRQRFGCGNIDIIPGEAP---IE-LPGKADAIF 102 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCeEEEecCch---hh-cCcCCCEEE
Confidence 3467899999999999999999874 4899999995 699999999988765 3555543321 11 235799999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
++... ..+..+++.+.++|+ +||.+++.............++++.||....+
T Consensus 103 ~~~~~---~~~~~~l~~~~~~Lk--~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSG---GNLTAIIDWSLAHLH--PGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ECCCc---cCHHHHHHHHHHhcC--CCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 87543 346788999999998 67777766533333344455678889865443
No 45
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=9.4e-12 Score=107.47 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=90.2
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceE-EEEeecCCCCcCc
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VMGLTWGFLDASI 135 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~l~w~~~~~~~ 135 (241)
++.|.++.....+.+|||+|||.|.+|+.+++... +++++|+|. .+++.+++|+..|++... +.. .+..++.
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N~~~~~~v~~---s~~~~~v 221 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAANGVENTEVWA---SNLYEPV 221 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHcCCCccEEEE---ecccccc
Confidence 34444443333344999999999999999999864 899999995 699999999999998753 332 2333343
Q ss_pred CCCCCcEEEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 136 FDLNPNIILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+ +||+|+++++++.-. ....++....+.|++ +|-+.++.... ......+.+.+| +|..+
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~-gGeL~iVan~~---l~y~~~L~~~Fg-~v~~l 286 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP-GGELWIVANRH---LPYEKKLKELFG-NVEVL 286 (300)
T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc-CCEEEEEEcCC---CChHHHHHHhcC-CEEEE
Confidence 34 899999999998732 334788899999984 33445555422 223334445555 44444
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.44 E-value=3.2e-12 Score=109.16 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=79.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
.+.+|||+|||+|..+..+++.|.+|+++|+++ +|++.++++.. ...+...|+.+. +..+.+||+|+++.++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~--~~l~~a~~~~~----~~~~~~~d~~~~--~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP--PMLAQARQKDA----ADHYLAGDIESL--PLATATFDLAWSNLAV 113 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH--HHHHHHHhhCC----CCCEEEcCcccC--cCCCCcEEEEEECchh
Confidence 467899999999999999999899999999995 69988887643 223445555442 3345689999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++..+...+++.+.++|+ |||.+++..
T Consensus 114 ~~~~d~~~~l~~~~~~Lk--~gG~l~~~~ 140 (251)
T PRK10258 114 QWCGNLSTALRELYRVVR--PGGVVAFTT 140 (251)
T ss_pred hhcCCHHHHHHHHHHHcC--CCeEEEEEe
Confidence 999999999999999998 667666553
No 47
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.43 E-value=6.9e-12 Score=104.99 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=78.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..++.+|||+|||+|..+..+++.+.+|+++|+++ +|+..++++...++. ++.+...++.+. ..+||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISE--QMVQMARNRAQGRDVAGNVEFEVNDLLSL-----CGEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECChhhC-----CCCcCEEEE
Confidence 45678999999999999999999888999999995 799999999887764 566666665443 158999999
Q ss_pred cCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDA--SAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
++++++. .....+++.+.++++ ++.++.+
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~--~~~~i~~ 156 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTK--ERVIFTF 156 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhC--CCEEEEE
Confidence 9999774 346677788877765 4544443
No 48
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.42 E-value=8.2e-12 Score=110.04 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=72.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc------CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n------~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.++.+|||+|||+|.+++.+++.|.+|+++|+++ +|++.+++++... ...+++...|+.+ .+++||+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~--~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-----l~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISA--AMVAEAERRAKEALAALPPEVLPKFEANDLES-----LSGKYDT 215 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcccccccccceEEEEcchhh-----cCCCcCE
Confidence 4678999999999999999999999999999995 6999999988754 2345555555432 2468999
Q ss_pred EEEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEE
Q 026274 143 ILGADVFYDASA--FDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 143 Il~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~ 175 (241)
|++.++++|.+. ...+++.+.++ .++++++
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~l---~~g~liI 247 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLASL---AEKRLII 247 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHhh---cCCEEEE
Confidence 999999977544 33455555544 2455544
No 49
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.42 E-value=1.5e-11 Score=103.58 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=81.6
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..++.+|||+|||+|..+..+++. + .+|+++|+++ ++++.+++++..++. ++.+...+..+. +..+.+||+|
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V 118 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHGNAMEL--PFDDNSFDYV 118 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEechhcC--CCCCCCccEE
Confidence 345789999999999999999875 3 4899999995 699999998876655 455555555432 2234689999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+++.++.+.++...+++.+.++|+ +||.+++.
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk--~gG~l~~~ 150 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVK--PGGKVVCL 150 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcC--cCeEEEEE
Confidence 999999898999999999999998 56655543
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.42 E-value=1.8e-12 Score=107.55 Aligned_cols=127 Identities=15% Similarity=-0.034 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec-CCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW-GFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w-~~~~~~~~~~~fDlIl~ 145 (241)
.+.+|||+|||+|..+..+++.. .+|+++|+++ ++++.+++++..++. ++.+...++ ........+.+||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~--~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE--PGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEech--HHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 45789999999999999998863 4899999996 699999999988775 577777776 43221133468999998
Q ss_pred cCCcCCCc--------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 146 ADVFYDAS--------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 146 ~dvly~~~--------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+-+..+.. ..+.+++.+.++|+ |+|.+++....+.........+.+.|+.+..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLK--PGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcC--CCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 64332111 25789999999998 6777777766555544555567788987773
No 51
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.41 E-value=7.9e-12 Score=108.18 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGF 130 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~ 130 (241)
+.....+++.......+|.+|||||||.|-+++.+|+. |++|+++.+|+ +..+.+++.+...++. +.+...||.+
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~--~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE--EQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 34445566666667778999999999999999999998 99999999995 6888999999888864 6666667654
Q ss_pred CCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 131 LDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 131 ~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
. +.+||.|++-+++.|. .+.+.+++.+.++|+ |||.+++.
T Consensus 124 ~-----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk--pgG~~~lq 165 (273)
T PF02353_consen 124 L-----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK--PGGRLVLQ 165 (273)
T ss_dssp --------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE--TTEEEEEE
T ss_pred c-----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC--CCcEEEEE
Confidence 3 2389999999999997 688999999999998 66766543
No 52
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=3.5e-12 Score=109.68 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=92.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~ 129 (241)
++...-.+.+++.....+|++|||||||.|.+++.+|+. |++|+++++|+ +..+.+++.+...|+. +++.-.||.
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~r 132 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYR 132 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccc
Confidence 455555666777777889999999999999999999997 79999999996 6999999999888875 677777887
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhc
Q 026274 130 FLDASIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQS 168 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~ 168 (241)
+.. ++||-|++.+.+.|.. ..+.+++.++++|++
T Consensus 133 d~~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 133 DFE-----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred ccc-----cccceeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 653 3599999999999865 499999999999983
No 53
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.40 E-value=1.5e-11 Score=107.16 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=96.6
Q ss_pred ccHHHHHHHHHhcc-CCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEee
Q 026274 53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLT 127 (241)
Q Consensus 53 ~~s~~L~~~l~~~~-~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~ 127 (241)
+.+..|.+.+.... ....+.+|||+|||+|.+++.+++.. ++|+++|+++ ++++.+++|+..++.. +.+...|
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECc
Confidence 34455555544321 11123689999999999999999874 5899999995 6999999999988874 7788777
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
|.+. ....+||+|+++++..... ....+++.+.++|+ +||.+++......
T Consensus 174 ~~~~---~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~--~gG~l~~e~g~~q 248 (284)
T TIGR00536 174 LFEP---LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK--PNGFLVCEIGNWQ 248 (284)
T ss_pred hhcc---CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc--CCCEEEEEECccH
Confidence 7643 2223799999975442211 35677888888987 6677777766544
Q ss_pred chhHHHHHHHHcCCEEEEE
Q 026274 183 GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~i 201 (241)
.......+....||....+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 249 QKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHhcCCCceeEE
Confidence 4433333333567764444
No 54
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.40 E-value=5.1e-12 Score=107.00 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=80.4
Q ss_pred cc-eEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ce
Q 026274 47 YG-LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NC 121 (241)
Q Consensus 47 ~g-~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~ 121 (241)
.| .+.|.. .+.+.+ ...+|.+|||+|||||.++..+++. + .+|+++|+++ +||+.+++.+...+. ++
T Consensus 29 ~g~~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~--~ML~~a~~k~~~~~~~~i 100 (233)
T PF01209_consen 29 FGQDRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP--GMLEVARKKLKREGLQNI 100 (233)
T ss_dssp --------S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H--HHHHHHHHHHHHTT--SE
T ss_pred CcHHHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH--HHHHHHHHHHHhhCCCCe
Confidence 44 356876 333443 2346779999999999999999875 3 4899999995 799999998887654 67
Q ss_pred EEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCe-EEEEEeecc
Q 026274 122 RVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGS-VFITTYHNR 181 (241)
Q Consensus 122 ~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~-~~~~~~~~r 181 (241)
++...|..+. +..+++||+|.++=.+.+.++.+..++.+.++|+ ||| ++++.+...
T Consensus 101 ~~v~~da~~l--p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk--PGG~l~ile~~~p 157 (233)
T PF01209_consen 101 EFVQGDAEDL--PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK--PGGRLVILEFSKP 157 (233)
T ss_dssp EEEE-BTTB----S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE--EEEEEEEEEEEB-
T ss_pred eEEEcCHHHh--cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC--CCeEEEEeeccCC
Confidence 7777776654 4456799999999999999999999999999999 455 445555443
No 55
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.39 E-value=2.1e-11 Score=103.66 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=102.5
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEee
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLT 127 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~ 127 (241)
.++.+..+.+.+..... ..+.+|||+|||+|..++.+++. +.+++++|+++ .+++.+++|+..++.. +.+...+
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~d 145 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLDNVTFLQSD 145 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECc
Confidence 35667777777665432 24568999999999999999987 45999999995 6999999999888774 6677766
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDAS--------------------------AFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
+.+. ....+||+|+++.++.... ....+++.+.++|+ +||.+++.....
T Consensus 146 ~~~~---~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~--~gG~~~~~~~~~ 220 (251)
T TIGR03534 146 WFEP---LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK--PGGWLLLEIGYD 220 (251)
T ss_pred hhcc---CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc--cCCEEEEEECcc
Confidence 6542 2346899999977654311 12467788889998 566777665443
Q ss_pred CchhHHHHHHHHcCCEEEEEec
Q 026274 182 SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
.. .....+++++||....+..
T Consensus 221 ~~-~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 221 QG-EAVRALFEAAGFADVETRK 241 (251)
T ss_pred HH-HHHHHHHHhCCCCceEEEe
Confidence 33 3345556779997666643
No 56
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.39 E-value=1.1e-13 Score=101.39 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=59.9
Q ss_pred EEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 75 LElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
||+|||+|.+...+... +.+++++|+|+. |++.+++....... ......+.-.+.......++||+|+++.+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999888887 669999999984 88777776665543 22222222222211222258999999999999
Q ss_pred CccHHHHHHHHHHHhhcCCCeEE
Q 026274 152 ASAFDDLFATITYLLQSSPGSVF 174 (241)
Q Consensus 152 ~~~~~~ll~~~~~lL~~~~~~~~ 174 (241)
.++.+.+++.+.++|+ |||.+
T Consensus 79 l~~~~~~l~~~~~~L~--pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLK--PGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-T--SS-EE
T ss_pred hhhHHHHHHHHHHHcC--CCCCC
Confidence 9999999999999998 55643
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=4.4e-11 Score=98.76 Aligned_cols=127 Identities=12% Similarity=0.082 Sum_probs=88.4
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fD 141 (241)
...++.+|||+|||+|.+++.+++. + .+|+++|+++ ++++.+++|++.+++ ++.+...+..+... ....+||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~--~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~-~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE--KAINLTRRNAEKFGVLNNIVLIKGEAPEILF-TINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhCCCCCeEEEEechhhhHh-hcCCCCC
Confidence 4557889999999999999999875 3 4899999995 699999999998874 45665555543211 1235799
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.|+..- ....+..+++.+.++|+ |+|.+++....-.........+++.||+...+
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~Lk--pgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIK--KGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcC--CCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 999743 34567889999999998 56665554322222223334457889855443
No 58
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=7.1e-12 Score=105.82 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=94.1
Q ss_pred cce-EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceE
Q 026274 47 YGL-FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCR 122 (241)
Q Consensus 47 ~g~-~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~ 122 (241)
.|. +.|.....- .....+|.+|||+|||||-+++.+++.. ++|+++|+|+ .||+.+++.+..-+. .++
T Consensus 33 ~g~~~~Wr~~~i~------~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~--~ML~~a~~k~~~~~~~~i~ 104 (238)
T COG2226 33 FGLHRLWRRALIS------LLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE--SMLEVAREKLKKKGVQNVE 104 (238)
T ss_pred CcchHHHHHHHHH------hhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCH--HHHHHHHHHhhccCccceE
Confidence 443 577743332 2222378999999999999999999975 5999999996 699999998876443 377
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeE-EEEEeec
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSV-FITTYHN 180 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~-~~~~~~~ 180 (241)
+...+..+. +..+.+||++.++=.+.+.++.+..++.+.|+|+ |||. +++....
T Consensus 105 fv~~dAe~L--Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK--pgG~~~vle~~~ 159 (238)
T COG2226 105 FVVGDAENL--PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK--PGGRLLVLEFSK 159 (238)
T ss_pred EEEechhhC--CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc--CCeEEEEEEcCC
Confidence 777766654 5667899999999999999999999999999999 5554 3444433
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.39 E-value=1.4e-11 Score=103.19 Aligned_cols=124 Identities=18% Similarity=0.115 Sum_probs=92.7
Q ss_pred CeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++|||+|||+|..+..+++.. .+|+++|+++ ++++.+++++...+. ++++...|.... + ...+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~--~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~-~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP--EQAEVGRERIRALGLQGRIRIFYRDSAKD--P-FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEEEecccccC--C-CCCCCCEeehHH
Confidence 479999999999999988863 5899999995 799999999887765 356666665432 1 235899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEEeecc---------------CchhHHHHHHHHcCCEEEEEe
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITTYHNR---------------SGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r---------------~~~~~~~~~~~~~g~~~~~i~ 202 (241)
++++..+...+++.+.++|+ |||.+++..... .+......++++.||++....
T Consensus 76 ~l~~~~~~~~~l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLK--DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcC--CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 99999999999999999998 555555432110 011223445688999998763
No 60
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.38 E-value=2.2e-11 Score=105.25 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=81.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..++.+|||+|||+|..++.+++. +. +|+++|+++ ++++.+++|....+. ++++...++.+. +..+.+||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~--~~l~~A~~~~~~~g~~~v~~~~~d~~~l--~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP--EMLAKARANARKAGYTNVEFRLGEIEAL--PVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH--HHHHHHHHHHHHcCCCCEEEEEcchhhC--CCCCCceeEE
Confidence 346789999999999988877764 54 799999995 699999999887765 456666665443 2334589999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++.++++.++...+++.+.++|+ |||.+++
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~Lk--pGG~l~i 181 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLK--PGGRFAI 181 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcC--CCcEEEE
Confidence 999999988899999999999998 5565554
No 61
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=5.9e-12 Score=107.86 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=76.7
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
...+.+|||+|||+|.++..+++. +.+|+++|+++ .|++.++++ + +++...|..+.. .+.+||+|++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~~~----~--~~~~~~d~~~~~---~~~~fD~v~~ 95 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAARER----G--VDARTGDVRDWK---PKPDTDVVVS 95 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHhc----C--CcEEEcChhhCC---CCCCceEEEE
Confidence 346789999999999999999987 67999999995 698887652 2 455555544321 2358999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.++++.++...+++.+.++|+ |||.+++.
T Consensus 96 ~~~l~~~~d~~~~l~~~~~~Lk--pgG~l~~~ 125 (255)
T PRK14103 96 NAALQWVPEHADLLVRWVDELA--PGSWIAVQ 125 (255)
T ss_pred ehhhhhCCCHHHHHHHHHHhCC--CCcEEEEE
Confidence 9999999999999999999998 55665553
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.37 E-value=8.9e-12 Score=111.12 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..+|||+|||+|.+++.+++.+ .+|+++|+++ .|++.+++|++.|++..++...|.. .. ..++||+|+++.+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~--~Al~~A~~nl~~n~l~~~~~~~D~~---~~-~~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSA--AALESSRATLAANGLEGEVFASNVF---SD-IKGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCEEEEcccc---cc-cCCCccEEEECCC
Confidence 3479999999999999999975 3899999995 6999999999999987665544332 22 2468999999988
Q ss_pred cCC-----CccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 149 FYD-----ASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 149 ly~-----~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++ ....+.+++.+.++|+ +||.+++
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~Lk--pgG~L~i 301 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLN--SGGELRI 301 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcC--cCCEEEE
Confidence 765 2356889999999998 4444433
No 63
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=1.3e-11 Score=105.72 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=78.0
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..++.+|||||||+|.++..+++. +.+|+++|+++ .|++.++++.. ++.+...|..+.. .+.+||+|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~~----~~~~~~~d~~~~~---~~~~fD~v~~ 99 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRLP----DCQFVEADIASWQ---PPQALDLIFA 99 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhCC----CCeEEECchhccC---CCCCccEEEE
Confidence 346789999999999999999886 46999999995 69998887642 3445544443321 2348999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.++++..+...+++.+.++|+ +||.+++..
T Consensus 100 ~~~l~~~~d~~~~l~~~~~~Lk--pgG~~~~~~ 130 (258)
T PRK01683 100 NASLQWLPDHLELFPRLVSLLA--PGGVLAVQM 130 (258)
T ss_pred ccChhhCCCHHHHHHHHHHhcC--CCcEEEEEC
Confidence 9999999999999999999998 566666643
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.36 E-value=3.7e-11 Score=103.84 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=98.3
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeec
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w 128 (241)
.-|.|......... +-...+|++|||||||.|..+.-++..|+ .|+|+|-+.. ..-+.+-..+.-+....+..+..
T Consensus 96 tEWrSd~KW~rl~p-~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~~~lpl 172 (315)
T PF08003_consen 96 TEWRSDWKWDRLLP-HLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPVFELPL 172 (315)
T ss_pred ccccccchHHHHHh-hhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccEEEcCc
Confidence 35888887766443 33468999999999999999999999999 6999999852 22111111111122222233322
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE-------------eeccCc----------hh
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT-------------YHNRSG----------HH 185 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~-------------~~~r~~----------~~ 185 (241)
+-...+. .+.||+|++.-|+||..+.-..++.++..|++ ||.+++. ...|+. ..
T Consensus 173 gvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~--gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~ 249 (315)
T PF08003_consen 173 GVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRP--GGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVA 249 (315)
T ss_pred chhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCC--CCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHH
Confidence 2211122 45899999999999999999999999999984 3333321 222332 23
Q ss_pred HHHHHHHHcCCEEEEEecC
Q 026274 186 LIEFLMVKWGLKCVKLVDG 204 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i~~~ 204 (241)
.+...+++.||.-.++.+.
T Consensus 250 ~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 250 ALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHHHcCCceEEEecC
Confidence 3455678999988887543
No 65
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=3.4e-12 Score=95.94 Aligned_cols=103 Identities=23% Similarity=0.261 Sum_probs=80.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
|.+|||+|||+|.+++.+++.+ .+++++|+++ .+++.++.|+..++. ++++...|+.+......+.+||+|+++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~--~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDP--EAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSH--HHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECH--HHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 4689999999999999999999 7999999995 799999999999876 5777777776554344567999999998
Q ss_pred CcCCC--------ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDA--------SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~--------~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++... .....+++.+.++|+ ++|.+++.
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~--~gG~~~~~ 114 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLK--PGGVLVFI 114 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEE--EEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 88753 245788999999998 55655543
No 66
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.36 E-value=6.6e-13 Score=109.71 Aligned_cols=125 Identities=23% Similarity=0.311 Sum_probs=90.9
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
-+++||||||||+.|..+-.+..+.+++|+|+ .|++.+.+ .++-....+.+...+.....+++||+|.++||+-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~--nMl~kA~e----Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISE--NMLAKAHE----KGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhH--HHHHHHHh----ccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 46899999999999999999988999999996 48876654 2321111111111122233456899999999999
Q ss_pred CCccHHHHHHHHHHHhhcCCCeEEEEEe-------------eccCc--hhHHHHHHHHcCCEEEEEec
Q 026274 151 DASAFDDLFATITYLLQSSPGSVFITTY-------------HNRSG--HHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 151 ~~~~~~~ll~~~~~lL~~~~~~~~~~~~-------------~~r~~--~~~~~~~~~~~g~~~~~i~~ 203 (241)
|...++.++-....+|+ +||.|.++. +.|+. ...+...++..||++..+.+
T Consensus 200 YlG~Le~~~~~aa~~L~--~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 200 YLGALEGLFAGAAGLLA--PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred hhcchhhHHHHHHHhcC--CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 99999999999999998 666666553 23333 33566678889999888743
No 67
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.6e-11 Score=96.13 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=114.1
Q ss_pred ccHHHHHHHHHhccCCCC---CCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 53 PCSVILAEYVWQQRYRFS---GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~---~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
+.+++|.+-|.+.....+ .+-++|||||+|.++-++++. + +.+.+||+|+ .+++...+.++.|+..+.+.+-
T Consensus 23 EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp--~A~~~Tl~TA~~n~~~~~~V~t 100 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP--EALEATLETARCNRVHIDVVRT 100 (209)
T ss_pred chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhcCCccceeeh
Confidence 456777777765433222 456999999999999999986 3 3799999995 7999999999999998777776
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC---------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchh
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA---------------------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHH 185 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~---------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~ 185 (241)
|...... .++.|+++-+.++--. .....|+..+..+|+ |.|+||+-.-.++..+
T Consensus 101 dl~~~l~---~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS--p~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 101 DLLSGLR---NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS--PRGVFYLVALRANKPK 175 (209)
T ss_pred hHHhhhc---cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC--cCceEEeeehhhcCHH
Confidence 6654332 3689999877654221 125667777888886 7788887766677666
Q ss_pred HHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEe
Q 026274 186 LIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVL 227 (241)
Q Consensus 186 ~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~ 227 (241)
.+-.+++..||.....+.+ ........+++++|
T Consensus 176 ei~k~l~~~g~~~~~~~~R---------k~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 176 EILKILEKKGYGVRIAMQR---------KAGGETLSILKFTR 208 (209)
T ss_pred HHHHHHhhcccceeEEEEE---------ecCCceEEEEEEEe
Confidence 6666888999998887554 23334556666654
No 68
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.36 E-value=5.5e-11 Score=103.61 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=89.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.+.+|||+|||+|.+++.+++. +++|+++|+++ ++++.+++|+..++. ++.+...|+.+. ..+.+||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~--~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP--DALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEE
Confidence 3568999999999999999987 45999999995 799999999999886 467777776432 22347999999
Q ss_pred cCCcCCCc-------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 146 ADVFYDAS-------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 146 ~dvly~~~-------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+++..... ....+++.+.++|+ +||.+++.... ....+..++...||....
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~--~gG~l~~e~g~--~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN--ENGVLVVEVGN--SMEALEEAYPDVPFTWLE 271 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC--CCCEEEEEECc--CHHHHHHHHHhCCCceee
Confidence 86643211 23567888888998 66777766543 223455566677776543
No 69
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=5.3e-11 Score=102.70 Aligned_cols=142 Identities=19% Similarity=0.196 Sum_probs=100.1
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHH-HcCCceEEEEeec
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVMGLTW 128 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~-~n~~~~~~~~l~w 128 (241)
.+.+..+.+++.......++.+|||+|||+|.+++.+++.. .+|+++|+++ .+++.+++|+. ....++.+...++
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~--~~l~~a~~n~~~~~~~~i~~~~~d~ 167 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP--EALAVARRNAKHGLGARVEFLQGDW 167 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhCCCCcEEEEEccc
Confidence 45566777777644444567799999999999999999875 5899999995 69999999988 2234577777777
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCC--------------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 129 GFLDASIFDLNPNIILGADVFYDA--------------------------SAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~--------------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
.+.. ...+||+|+++.+.... ..+..+++.+.++|+ +||.+++......
T Consensus 168 ~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk--~gG~l~~e~g~~~ 242 (275)
T PRK09328 168 FEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK--PGGWLLLEIGYDQ 242 (275)
T ss_pred cCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc--cCCEEEEEECchH
Confidence 4432 24589999987664321 124567778889998 5677776654433
Q ss_pred chhHHHHHHHHcCCEEEEE
Q 026274 183 GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 183 ~~~~~~~~~~~~g~~~~~i 201 (241)
. ..+..++++.||.....
T Consensus 243 ~-~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 243 G-EAVRALLAAAGFADVET 260 (275)
T ss_pred H-HHHHHHHHhCCCceeEE
Confidence 3 34555667889874444
No 70
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.35 E-value=1.4e-11 Score=113.30 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA 133 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~ 133 (241)
+..+.+.+.......++.+|||+|||+|.+++.+|+.+.+|+++|+++ ++++.+++|+..|+. ++++...|+.+...
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~--~av~~a~~n~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVP--ESVEKAQQNAELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCH--HHHHHHHHHHHHhCCCceEEEeCCHHHHHH
Confidence 334444444433334567999999999999999999888999999995 699999999999886 57777776654221
Q ss_pred C--cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCC
Q 026274 134 S--IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLP 209 (241)
Q Consensus 134 ~--~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p 209 (241)
. ..+.+||+|+...+-. .....+++.+.+ ++ +++++|+++.+.........+ .+.||++..+ .|+|+.++
T Consensus 355 ~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~--~~~ivyvsc~p~tlard~~~l-~~~gy~~~~~~~~DmFP~T~ 428 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LK--PERIVYVSCNPATLARDLEFL-CKEGYGITWVQPVDMFPHTA 428 (431)
T ss_pred HHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cC--CCEEEEEcCCHHHHHHHHHHH-HHCCeeEEEEEEeccCCCCC
Confidence 1 1134699999755532 335666666665 33 677888887654443344444 4567877776 88888887
Q ss_pred ccc
Q 026274 210 HYK 212 (241)
Q Consensus 210 ~~~ 212 (241)
|.+
T Consensus 429 HvE 431 (431)
T TIGR00479 429 HVE 431 (431)
T ss_pred CCC
Confidence 753
No 71
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.35 E-value=2.4e-11 Score=117.76 Aligned_cols=129 Identities=22% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.++++|||||||||.+|+.+++.|+ +|+++|+|+ .+++.+++|++.|+.. +++...|..+.... ...+||+|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~--~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~-~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSN--TYLEWAERNFALNGLSGRQHRLIQADCLAWLKE-AREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCccceEEEEccHHHHHHH-cCCCcCEEE
Confidence 3578999999999999999999988 699999995 6999999999999874 67777765443222 145899999
Q ss_pred EcCCcCCC-----------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 145 GADVFYDA-----------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 145 ~~dvly~~-----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
+..+.+-. .++..++..+.++|+ +||+++++...+..... ...+.+.|+.+..+..
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~--~gG~l~~~~~~~~~~~~-~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR--PGGTLYFSNNKRGFKMD-EEGLAKLGLKAEEITA 680 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC--CCCEEEEEeCCccCChh-HHHHHhCCCeEEEEec
Confidence 87765532 245678888889998 56666665544433322 4455778999988843
No 72
>PRK08317 hypothetical protein; Provisional
Probab=99.35 E-value=2.8e-11 Score=101.48 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
|-....-+.+.......++.+|||+|||+|..+..+++.. .+|+++|+++ .+++.++++......++.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~--~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 2 PDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE--AMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred chHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHHHHhhCCCCceEEEecccc
Confidence 3444444555555555678899999999999999988763 4899999995 6888888874444455666666554
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.. +..+.+||+|++..++.+..+...+++.+.++|+ +||.+++
T Consensus 80 ~~--~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~--~gG~l~~ 122 (241)
T PRK08317 80 GL--PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLR--PGGRVVV 122 (241)
T ss_pred cC--CCCCCCceEEEEechhhccCCHHHHHHHHHHHhc--CCcEEEE
Confidence 43 2334689999999999999999999999999998 4554443
No 73
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.35 E-value=8.2e-11 Score=98.91 Aligned_cols=101 Identities=21% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
++.+|||+|||+|..+..+++.+ .+++++|+++ .+++.+++++..++. ++.+...++.+.. ....+||+|+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDLGLSGNVEFVQGDAEALP--FPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhcccccccCeEEEecccccCC--CCCCCccEEE
Confidence 56899999999999999998876 6999999996 699999998876433 4566666655432 2245899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
++.++++..+...+++.+.++|+ ++|.+++
T Consensus 127 ~~~~l~~~~~~~~~l~~~~~~L~--~gG~li~ 156 (239)
T PRK00216 127 IAFGLRNVPDIDKALREMYRVLK--PGGRLVI 156 (239)
T ss_pred EecccccCCCHHHHHHHHHHhcc--CCcEEEE
Confidence 99999999999999999999998 4554443
No 74
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.33 E-value=1.8e-11 Score=110.08 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=103.7
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~ 132 (241)
.+..|.+++...... .+.+||||+||+|.+|+.+++...+|+++|+++ .+++.+++|+..|++ ++++...|..+..
T Consensus 191 ~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~--~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 191 VNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISK--PSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 355566665543221 235799999999999999998877999999995 699999999999987 5777777765432
Q ss_pred cCcC--------------CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEE
Q 026274 133 ASIF--------------DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKC 198 (241)
Q Consensus 133 ~~~~--------------~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 198 (241)
.... ..+||+|+.-++ + ....+.+++.+.+ ++.++|+++.+.........+.+ ||++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~-----~~~ivyvSC~p~tlarDl~~L~~--gY~l 338 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA-----YERILYISCNPETLCENLETLSQ--THKV 338 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc-----cCCEEEEEeCHHHHHHHHHHHcC--CcEE
Confidence 1110 125899998555 4 3445555555533 46788988887555455555543 8998
Q ss_pred EEE--ecCCCCCCcccc
Q 026274 199 VKL--VDGFSFLPHYKA 213 (241)
Q Consensus 199 ~~i--~~~~~~~p~~~~ 213 (241)
+.+ .|+|+.++|.+.
T Consensus 339 ~~v~~~DmFPqT~HvE~ 355 (362)
T PRK05031 339 ERFALFDQFPYTHHMEC 355 (362)
T ss_pred EEEEEcccCCCCCcEEE
Confidence 887 888888877653
No 75
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.33 E-value=2.7e-10 Score=101.28 Aligned_cols=126 Identities=20% Similarity=0.137 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+.+|||||||+|..++.+++. +.+|+++|.++ +|++.++++...++ +++...+..+. +..+.+||+|+++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~--i~~i~gD~e~l--p~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKE--CKIIEGDAEDL--PFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccC--CeEEeccHHhC--CCCCCceeEEEEcC
Confidence 4679999999999998888875 35899999995 69999988765433 44555555432 23346899999999
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEE-Eee-c-----c---------CchhHHHHHHHHcCCEEEEEec
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFIT-TYH-N-----R---------SGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~-~~~-~-----r---------~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
++++..+.+.+++.+.++|+ +||.+++ ... . + ...+....++++.||+...+.+
T Consensus 187 ~L~~~~d~~~~L~e~~rvLk--PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLK--IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcC--CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 99998899999999999998 4555443 211 1 0 1123344567889999888743
No 76
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=3.2e-11 Score=99.72 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..+.+|||||||+|.+|+.++..+ ++|+++|.++ ++++.+++|++.++. ++++...|+.+.... ...+||+|++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~-~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATLKAGNARVVNTNALSFLAQ-PGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCCcEEEEEchHHHHHhh-cCCCceEEEEC
Confidence 456799999999999999755555 4999999995 799999999998886 467777666543211 23469999977
Q ss_pred CCcCCCccHHHHHHHHHHH--hhcCCCeEEEEEeeccC
Q 026274 147 DVFYDASAFDDLFATITYL--LQSSPGSVFITTYHNRS 182 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~l--L~~~~~~~~~~~~~~r~ 182 (241)
++ |.....+.+++.+... |+ +++++++.+..+.
T Consensus 129 PP-y~~g~~~~~l~~l~~~~~l~--~~~iv~ve~~~~~ 163 (199)
T PRK10909 129 PP-FRKGLLEETINLLEDNGWLA--DEALIYVESEVEN 163 (199)
T ss_pred CC-CCCChHHHHHHHHHHCCCcC--CCcEEEEEecCCC
Confidence 76 6666677777777663 43 6889999876643
No 77
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=9e-11 Score=109.81 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=89.6
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
+.+|||+|||+|.+++.+++. +++|+++|+|+ ++++.+++|+..+++ ++.+...+|.+. ....+||+|+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~~~l~~~v~~~~~D~~~~---~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIKYEVTDRIQIIHSNWFEN---IEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHcCCccceeeeecchhhh---CcCCCccEEEEC
Confidence 468999999999999998875 46999999995 699999999998876 466676666432 223579999997
Q ss_pred CCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 147 DVFYDAS--------------------------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 147 dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.+..... .+..+++.+.++|+ ++|.+++..... ....+..++.+.||....
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~--~gG~l~lEig~~-q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK--PNGKIILEIGFK-QEEAVTQIFLDHGYNIES 290 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc--CCCEEEEEECCc-hHHHHHHHHHhcCCCceE
Confidence 6543211 24456777888887 667777765443 334455566778988766
Q ss_pred Ee
Q 026274 201 LV 202 (241)
Q Consensus 201 i~ 202 (241)
+.
T Consensus 291 ~~ 292 (506)
T PRK01544 291 VY 292 (506)
T ss_pred EE
Confidence 53
No 78
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.31 E-value=1.5e-10 Score=87.39 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=78.3
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~ 138 (241)
+.......++.+|||+|||+|..+..+++. +.+|+++|+++ .+++.+++|++.++. ++.+...+..... +....
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNP--EALRLIERNARRFGVSNIVIVEGDAPEAL-EDSLP 87 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCH--HHHHHHHHHHHHhCCCceEEEeccccccC-hhhcC
Confidence 333333445779999999999999999986 34899999996 699999999887765 3555544433211 11234
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+||+|++.... .....+++.+.++|+ ++|.+++..
T Consensus 88 ~~D~v~~~~~~---~~~~~~l~~~~~~Lk--~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSG---GLLQEILEAIWRRLR--PGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcc---hhHHHHHHHHHHHcC--CCCEEEEEe
Confidence 89999986543 345789999999998 667776653
No 79
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.30 E-value=5.2e-11 Score=98.92 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=69.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++. +.+++++|+|+ +|++.++++.. .+.+...+..+ +..+.+||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~~----~~~~~~~d~~~---~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYLP----NINIIQGSLFD---PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhCC----CCcEEEeeccC---CCCCCCEEEEEEC
Confidence 35678999999999999999886 56999999995 69998887642 23444555443 3345689999999
Q ss_pred CCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 147 DVFYDAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 147 dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.+++|.. ....+++.+.+++ ++.+++..+
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~---~~~v~i~e~ 143 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS---NRYILIAEY 143 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc---CcEEEEEEe
Confidence 9998864 3445555555553 455555543
No 80
>PLN02672 methionine S-methyltransferase
Probab=99.30 E-value=7.5e-11 Score=117.41 Aligned_cols=147 Identities=18% Similarity=0.117 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHhccC-CCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC----------
Q 026274 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL---------- 119 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~-~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~---------- 119 (241)
+.+..|.+.+...+. .+++++|||||||+|.+++.+++.. ++|+++|+++ ++++.+++|+..|++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~--~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP--RAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCccccccccccc
Confidence 667777777654432 2467799999999999999999874 4899999995 799999999998753
Q ss_pred -------ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc--------------------------------------c
Q 026274 120 -------NCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS--------------------------------------A 154 (241)
Q Consensus 120 -------~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~--------------------------------------~ 154 (241)
++++...||.+.... ...+||+|+++.+.--.. .
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~ 256 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGL 256 (1082)
T ss_pred ccccccccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHH
Confidence 367777777654311 112699999987742111 1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecC
Q 026274 155 FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDG 204 (241)
Q Consensus 155 ~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~ 204 (241)
++.++....++|+ ++|.+++....+........++++.||....++..
T Consensus 257 yr~i~~~a~~~L~--pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 257 IARAVEEGISVIK--PMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHHHhcc--CCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 2566777778887 67888888777766555435777899999888553
No 81
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=7.5e-11 Score=99.00 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++.+. +++++|+++ ++++.++.+.. .++.+...+..+. +..+.+||+|+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~---~~~~~~~~d~~~~--~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLS---ENVQFICGDAEKL--PLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcC---CCCeEEecchhhC--CCCCCceeEEEEh
Confidence 4457899999999999999999864 689999995 68877776554 2455555665543 2234689999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++..+...+++.+.++|+ ++|.+++.
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~--~~G~l~~~ 134 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLK--PGGLLAFS 134 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcC--CCcEEEEE
Confidence 999999999999999999998 56666654
No 82
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.30 E-value=4e-11 Score=108.59 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=81.5
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCC
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
++.+.....++.+|||+|||+|.+++.+++. |++|+++|+++ ++++.+++++. +..+++...++.+. +++
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~--~~l~~A~~~~~--~l~v~~~~~D~~~l-----~~~ 228 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA--EQQKLAQERCA--GLPVEIRLQDYRDL-----NGQ 228 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhc--cCeEEEEECchhhc-----CCC
Confidence 3444444457889999999999999999875 78999999995 79999998874 44556655555432 358
Q ss_pred CcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 140 PNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 140 fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
||.|++..++++. .+.+.+++.+.++|+ |||.+++.
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk--pGG~lvl~ 266 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLK--PDGLFLLH 266 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 9999999999886 456889999999998 55655543
No 83
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.30 E-value=6.3e-11 Score=99.45 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=71.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.++++....+. .+.+...++.. .+.+||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISP--QMVEEARERAPEAGLAGNITFEVGDLES-----LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccCcEEEEcCchh-----ccCCcCEEEEc
Confidence 4567999999999999999999999999999995 699999998877665 56666555322 24579999999
Q ss_pred CCcCCC--ccHHHHHHHHHHHh
Q 026274 147 DVFYDA--SAFDDLFATITYLL 166 (241)
Q Consensus 147 dvly~~--~~~~~ll~~~~~lL 166 (241)
+++++. +....+++.+.+++
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhc
Confidence 999663 35556667776664
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=2.6e-10 Score=100.43 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=86.4
Q ss_pred CeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+|||+|||+|.+++.+++. +++|+++|+++ .+++.+++|++.++. ++.+...|+.+. ..+.+||+|+++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~--~al~~A~~n~~~~~l~~~i~~~~~D~~~~---l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISP--DALAVAEINIERHGLEDRVTLIESDLFAA---LPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCcEEEEECchhhh---CCCCCccEEEECC
Confidence 68999999999999999987 45999999995 799999999998886 467777776432 2234799999986
Q ss_pred CcCCC-------------------------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 148 VFYDA-------------------------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 148 vly~~-------------------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+.... .....+++.+.++|+ +||.+++..... ...+..++...|+....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~--pgG~l~~E~g~~--~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT--EDGVLVVEVGNS--RVHLEEAYPDVPFTWLE 283 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC--CCCEEEEEECcC--HHHHHHHHhhCCCEEEE
Confidence 54221 123577888889998 667777654432 22344455566665433
No 85
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.28 E-value=5e-11 Score=106.85 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDAS 134 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~ 134 (241)
..|.+++.+.... .+.+|||||||+|.+|+.+++...+|+++|+++ ++++.+++|+..|++ ++++...+..+....
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~--~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNFRRVLATEIAK--PSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 4444454443221 234699999999999999999877999999995 799999999999987 577777676543221
Q ss_pred c-----C---------CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 135 I-----F---------DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 135 ~-----~---------~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
. . ..+||+|+.-++ .....+.+++.+. + ++.++|+++.+.........+.+ ||++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~--~~~ivYvsC~p~tlaRDl~~L~~--~Y~l~~ 331 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---A--YERILYISCNPETLKANLEQLSE--THRVER 331 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---c--CCcEEEEEcCHHHHHHHHHHHhc--CcEEEE
Confidence 0 0 124899998555 2344555555543 3 57899999888766666666653 377766
Q ss_pred E--ecCCCCCCcccc
Q 026274 201 L--VDGFSFLPHYKA 213 (241)
Q Consensus 201 i--~~~~~~~p~~~~ 213 (241)
+ .|+|+.++|.+.
T Consensus 332 v~~~DmFP~T~HvE~ 346 (353)
T TIGR02143 332 FALFDQFPYTHHMEC 346 (353)
T ss_pred EEEcccCCCCCcEEE
Confidence 6 888888877754
No 86
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=1.9e-11 Score=99.53 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=73.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
.++||+|||.|.++..||....+++++|+++ .+++.+++.... ...+++...+..+. .++++||+|+.++++||
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~--~Al~~Ar~Rl~~-~~~V~~~~~dvp~~---~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISP--RALARARERLAG-LPHVEWIQADVPEF---WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-H--HHHHHHHHHTTT--SSEEEEES-TTT------SS-EEEEEEES-GGG
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCH--HHHHHHHHhcCC-CCCeEEEECcCCCC---CCCCCeeEEEEehHhHc
Confidence 4799999999999999999988999999995 699999887763 24677777665443 34579999999999999
Q ss_pred Ccc---HHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 152 ASA---FDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 152 ~~~---~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..+ +..+++.+...|+ |||.+++++.
T Consensus 119 L~~~~~L~~~l~~l~~~L~--pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALA--PGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEE--EEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 865 4567777888887 7788887754
No 87
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.27 E-value=5.6e-11 Score=99.36 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
++..+...+.......++.+|||+|||+|..+..+++... +|+++|+++ ++++.+++|++.++. ++++...|..
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~--~~~~~A~~~~~~~g~~~v~~~~~d~~ 138 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP--ELAEKAERRLRKLGLDNVIVIVGDGT 138 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHCCCCCeEEEECCcc
Confidence 3344444554444456788999999999999999998743 599999995 799999999998876 4666665554
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+... ...+||+|++.....+ +.+.+.+.|+ +||.+++...
T Consensus 139 ~~~~--~~~~fD~Ii~~~~~~~------~~~~~~~~L~--~gG~lv~~~~ 178 (215)
T TIGR00080 139 QGWE--PLAPYDRIYVTAAGPK------IPEALIDQLK--EGGILVMPVG 178 (215)
T ss_pred cCCc--ccCCCCEEEEcCCccc------ccHHHHHhcC--cCcEEEEEEc
Confidence 3221 1247999998755433 3455778887 6777776643
No 88
>PRK04266 fibrillarin; Provisional
Probab=99.27 E-value=3.9e-10 Score=95.04 Aligned_cols=151 Identities=12% Similarity=0.070 Sum_probs=90.6
Q ss_pred CcceEEeccHH-HHHHHHHh---ccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 46 EYGLFVWPCSV-ILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 46 ~~g~~~W~~s~-~L~~~l~~---~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
..+.++|.... .++.++.. .....++.+|||+|||+|..++.+++.. .+|+++|+++ +|++.+.++++.. .
T Consensus 44 ~~~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~--~ml~~l~~~a~~~-~ 120 (226)
T PRK04266 44 GVEYREWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP--RPMRELLEVAEER-K 120 (226)
T ss_pred CcEEEEECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCH--HHHHHHHHHhhhc-C
Confidence 34556775422 22222222 2344577899999999999999999873 4899999995 6998887776643 3
Q ss_pred ceEEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-----cCch----hHHHH
Q 026274 120 NCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-----RSGH----HLIEF 189 (241)
Q Consensus 120 ~~~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-----r~~~----~~~~~ 189 (241)
++.+...|..+... .....+||+|+..-. .+.....+++.+.++|+ |||.+++..+. +... .....
T Consensus 121 nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LK--pGG~lvI~v~~~~~d~~~~~~~~~~~~~~ 196 (226)
T PRK04266 121 NIIPILADARKPERYAHVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLK--DGGYLLLAIKARSIDVTKDPKEIFKEEIR 196 (226)
T ss_pred CcEEEECCCCCcchhhhccccCCEEEECCC--ChhHHHHHHHHHHHhcC--CCcEEEEEEecccccCcCCHHHHHHHHHH
Confidence 34444444332110 112346999985311 12233456899999998 55655553221 1111 11224
Q ss_pred HHHHcCCEEEEEec
Q 026274 190 LMVKWGLKCVKLVD 203 (241)
Q Consensus 190 ~~~~~g~~~~~i~~ 203 (241)
.+++.||+.....+
T Consensus 197 ~l~~aGF~~i~~~~ 210 (226)
T PRK04266 197 KLEEGGFEILEVVD 210 (226)
T ss_pred HHHHcCCeEEEEEc
Confidence 56788999988744
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=7.1e-11 Score=98.12 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=79.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFL 131 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~ 131 (241)
.+..++.+.....++.+|||+|||+|..+..+++. +.+|+++|+++ ++++.+++|+..++.. +++...|..+.
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~--~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK--ELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 33444444434456789999999999999888875 35899999995 6999999999888763 56666555432
Q ss_pred CcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 132 DASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 132 ~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.. ...+||+|++..++.+. .+.+.+.|+ +||.++++..
T Consensus 137 ~~--~~~~fD~Ii~~~~~~~~------~~~l~~~L~--~gG~lvi~~~ 174 (205)
T PRK13944 137 LE--KHAPFDAIIVTAAASTI------PSALVRQLK--DGGVLVIPVE 174 (205)
T ss_pred Cc--cCCCccEEEEccCcchh------hHHHHHhcC--cCcEEEEEEc
Confidence 21 13589999988776543 346778887 6777777653
No 90
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.26 E-value=7.8e-11 Score=100.57 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+.+|||+|||+|..+..+++. +.+|+++|.++ +|++.+++++..++. ++++...+..+.. ...+|+|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~----~~~~D~v 129 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIRDIA----IENASMV 129 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEeCChhhCC----CCCCCEE
Confidence 5679999999999998888772 46999999995 799999999987655 5666665554321 2359999
Q ss_pred EEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 144 LGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 144 l~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+++-++++.+ ....+++.+.+.|+ |||.+++..
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~Lk--pGG~l~l~e 164 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLN--PGGALVLSE 164 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcC--CCCEEEEEE
Confidence 9998887754 34689999999998 666666653
No 91
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=7.8e-11 Score=96.73 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=80.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC-CCCCcE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF-DLNPNI 142 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~-~~~fDl 142 (241)
....+.+||||+||+|.+|+.++++|+ +|+++|.++ .+++.+++|++.++.. +++...|..+...... ..+++.
T Consensus 46 ~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 46 PEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred HhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCce
Confidence 345788999999999999999999998 899999996 6999999999999864 5555555433211111 223455
Q ss_pred EEEcCCcCCCccHHHHHHHHHH--HhhcCCCeEEEEEeecc
Q 026274 143 ILGADVFYDASAFDDLFATITY--LLQSSPGSVFITTYHNR 181 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~--lL~~~~~~~~~~~~~~r 181 (241)
|+..|+-|.......+++.+.. +| ++++++++.+..+
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~~~~l--~~~~iiv~E~~~~ 162 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCENNWIL--EDTVLIVVEEDRE 162 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHHCCCC--CCCeEEEEEecCC
Confidence 5557888877777777776654 34 3778888876654
No 92
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.26 E-value=2.2e-10 Score=101.80 Aligned_cols=135 Identities=16% Similarity=0.027 Sum_probs=94.7
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI 135 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~ 135 (241)
.++..+.......++.+|||.|||||.+.+.++..|++|+++|+++ .|+..++.|++..+.. +.+...|..+. +.
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~--~~~~~a~~nl~~~g~~~i~~~~~D~~~l--~~ 244 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDW--KMVAGARINLEHYGIEDFFVKRGDATKL--PL 244 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCH--HHHHHHHHHHHHhCCCCCeEEecchhcC--Cc
Confidence 4555555444445678999999999999999999999999999995 6999999999887764 34555554432 23
Q ss_pred CCCCCcEEEEcCCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 136 FDLNPNIILGADVFYDA---------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.+.+||+|+++.++-.. .....+++.+.+.|+ +||.+++....+. ....+++++|| +...
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk--~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK--SEGWIVYAVPTRI---DLESLAEDAFR-VVKR 313 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc--CCcEEEEEEcCCC---CHHHHHhhcCc-chhe
Confidence 34689999987654221 225788999999998 4554444433322 24456788899 6554
No 93
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.25 E-value=1.4e-11 Score=90.58 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=71.7
Q ss_pred EEEecCCCCHHHHHHHHhC-----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
|||+|||+|.....+++.. .+++++|+++ +|++.++++....+.++++...|+.+. +...++||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~~~~~~~D~~~l--~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPKVRFVQADARDL--PFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTTSEEEESCTTCH--HHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCceEEEECCHhHC--cccCCCeeEEEEcCC
Confidence 7999999999999999874 6999999995 799999999888777888888888664 223458999999655
Q ss_pred -cCC--CccHHHHHHHHHHHhhc
Q 026274 149 -FYD--ASAFDDLFATITYLLQS 168 (241)
Q Consensus 149 -ly~--~~~~~~ll~~~~~lL~~ 168 (241)
+.| .+....+++.+.++++|
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCC
Confidence 555 34688999999999984
No 94
>PRK05785 hypothetical protein; Provisional
Probab=99.25 E-value=8.4e-11 Score=99.15 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=71.2
Q ss_pred CCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+.+|||+|||||..+..+++. +.+|+++|+++ +|++.++... .....+..+. +..+++||+|+++.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~~~~-------~~~~~d~~~l--p~~d~sfD~v~~~~~l 120 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNLVAD-------DKVVGSFEAL--PFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHHhcc-------ceEEechhhC--CCCCCCEEEEEecChh
Confidence 579999999999999999988 67999999995 6999877531 1233444332 4456789999999999
Q ss_pred CCCccHHHHHHHHHHHhhc
Q 026274 150 YDASAFDDLFATITYLLQS 168 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~ 168 (241)
++.++.+.+++.+.++|++
T Consensus 121 ~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 121 HASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred hccCCHHHHHHHHHHHhcC
Confidence 9999999999999999984
No 95
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.24 E-value=6.4e-10 Score=92.47 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=78.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+|||+|||+|..+..+++.+. +++++|+++ .+++.++++.. ...++.+...+..+.. ....+||+|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~-~~~~i~~~~~d~~~~~--~~~~~~D~i~~ 112 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSE-LPLNIEFIQADAEALP--FEDNSFDAVTI 112 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhc-cCCCceEEecchhcCC--CCCCcEEEEEE
Confidence 3678999999999999998888654 899999995 68888888775 2334566665554432 22458999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+.++.+..+...+++.+.++|+ +||.+++
T Consensus 113 ~~~~~~~~~~~~~l~~~~~~L~--~gG~l~~ 141 (223)
T TIGR01934 113 AFGLRNVTDIQKALREMYRVLK--PGGRLVI 141 (223)
T ss_pred eeeeCCcccHHHHHHHHHHHcC--CCcEEEE
Confidence 9999999999999999999998 4555443
No 96
>PRK06202 hypothetical protein; Provisional
Probab=99.24 E-value=2.6e-10 Score=96.30 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=69.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh----C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~----g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.++.+|||||||+|.++..+++. | .+|+++|+++ +|++.++++...++..+ ...+-+... ..+.+||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~--~~~~~~~l~--~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGVTF--RQAVSDELV--AEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCCeE--EEEeccccc--ccCCCccE
Confidence 35679999999999988888753 4 4899999996 69999988766555443 333332221 23468999
Q ss_pred EEEcCCcCCCcc--HHHHHHHHHHHhh
Q 026274 143 ILGADVFYDASA--FDDLFATITYLLQ 167 (241)
Q Consensus 143 Il~~dvly~~~~--~~~ll~~~~~lL~ 167 (241)
|+++.+++|.++ ...+++.+.++++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC
Confidence 999999999766 4568888888875
No 97
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.23 E-value=2.7e-09 Score=87.86 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=83.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
...++.+|||+|||+|..++.+++. +.+|+++|.++ ++++.+++|++.++. ++++...+..+.... ....+|.+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~--~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~-~~~~~d~v 113 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE--EVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ-LAPAPDRV 113 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCeEEEECchHHHHhh-CCCCCCEE
Confidence 3446789999999999999999875 35999999995 799999999988775 455555444321111 12245666
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH---HHcCCEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM---VKWGLKCVKL 201 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~---~~~g~~~~~i 201 (241)
+.. .......+++.+.++|+ +||.+++..............+ +..++++..+
T Consensus 114 ~~~----~~~~~~~~l~~~~~~Lk--pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 114 CIE----GGRPIKEILQAVWQYLK--PGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred EEE----CCcCHHHHHHHHHHhcC--CCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 542 23456889999999998 5666666544432222222223 2357777666
No 98
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.22 E-value=1.4e-10 Score=95.42 Aligned_cols=128 Identities=13% Similarity=0.015 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcC-CCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIF-DLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~-~~~fDlIl~ 145 (241)
...++||||||+|..+..+|+. ..+|+++|+++ ++++.+++++..+++ ++++...+..+...... +..+|.|+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~--~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT--PIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 3458999999999999999987 34899999996 699999999887765 57777766654322222 347999987
Q ss_pred cC--CcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHc-CCEEEEE
Q 026274 146 AD--VFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 146 ~d--vly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~i 201 (241)
+- +.+... ..+.+++.+.++|+ +||.+++..........+...+.+. +|.....
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk--pgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLK--KGGVIHFKTDNEPLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHhCCCeEeccc
Confidence 63 222211 12679999999998 6777777665554333333333334 4766544
No 99
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.22 E-value=4.5e-10 Score=102.02 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=88.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCcCc--CCCCCcE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDASI--FDLNPNI 142 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~~~--~~~~fDl 142 (241)
.++++|||+|||||.+++.++..|+ +|+++|+++ .+++.+++|+..|++ ++++...|+.+..... ...+||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~--~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQ--EALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 3678999999999999998887777 899999995 699999999999987 3567766655432211 1347999
Q ss_pred EEEcCCcCCCc---------cHHHHHHHHHHHhhcCCCeEEEE-EeeccCchhHHHHH----HHHcCCEEEEE
Q 026274 143 ILGADVFYDAS---------AFDDLFATITYLLQSSPGSVFIT-TYHNRSGHHLIEFL----MVKWGLKCVKL 201 (241)
Q Consensus 143 Il~~dvly~~~---------~~~~ll~~~~~lL~~~~~~~~~~-~~~~r~~~~~~~~~----~~~~g~~~~~i 201 (241)
|++..+.|... .+..++....++|+ +||.+++ ++......+.+..+ +.+.|-++..+
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk--~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN--PGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC--CCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 99777765432 35566667788887 5565554 43333333333332 34556666555
No 100
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.22 E-value=3e-10 Score=96.31 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHh----CCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~----g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+.+|||+|||+|..+..+++. +.+|+++|+++ +|++.+++++...+ .++++...++.+.. ...+|+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~d~v 126 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCNDIRHVE----IKNASMV 126 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECChhhCC----CCCCCEE
Confidence 5678999999999999988874 45899999995 79999999887644 35677776665432 1258999
Q ss_pred EEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 144 LGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 144 l~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+++.++++.. ....+++.+.+.|+ |||.+++...
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~Lk--pgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLN--PNGVLVLSEK 162 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcC--CCeEEEEeec
Confidence 9999887754 45789999999998 6677776643
No 101
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.22 E-value=3e-11 Score=105.71 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=93.4
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCC
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~ 138 (241)
+.+++..++++.|||+|||||++|+++|+.|| +|.++|.+. +++.+++.+..|+.. +++.+....+...| .+
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~---ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~e 126 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS---IADFARKIVKDNGLEDVITVIKGKVEDIELP--VE 126 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH---HHHHHHHHHHhcCccceEEEeecceEEEecC--cc
Confidence 44566789999999999999999999999999 899999994 889999999999885 44444444444223 46
Q ss_pred CCcEEEEc---CCcCCCccHHHHHHHHHHHhhcCCCeEE--------EEEeeccCchhH-HHHHHHHcCCEEEEE
Q 026274 139 NPNIILGA---DVFYDASAFDDLFATITYLLQSSPGSVF--------ITTYHNRSGHHL-IEFLMVKWGLKCVKL 201 (241)
Q Consensus 139 ~fDlIl~~---dvly~~~~~~~ll~~~~~lL~~~~~~~~--------~~~~~~r~~~~~-~~~~~~~~g~~~~~i 201 (241)
+.|+|++- -++++...+..++-.-.+.|+ +||++ +.+...+..... +.+...-+||....+
T Consensus 127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~--~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~ 199 (346)
T KOG1499|consen 127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLK--EGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCI 199 (346)
T ss_pred ceeEEeehhhhHHHHHhhhhhhhhhhhhhccC--CCceEccccceEEEEeccCchhhhhhcCccccccccchhhh
Confidence 89999842 344455667777777778887 44443 344444433322 334556667666555
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.20 E-value=1.9e-10 Score=107.00 Aligned_cols=103 Identities=22% Similarity=0.209 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.++.+|||||||+|..+..+++.+.+|+++|+++ +|++.++.... ...++.+...+......+..+.+||+|+++.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~--~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIE--SVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH--HHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 4567999999999999999999988999999996 68875543211 12356666666654323344568999999999
Q ss_pred cCCCcc--HHHHHHHHHHHhhcCCCeEEEE
Q 026274 149 FYDASA--FDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 149 ly~~~~--~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+++..+ ...+++.+.++|+ ++|.+++
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk--~gG~l~~ 140 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLK--VGGYIFF 140 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcC--CCeEEEE
Confidence 998765 6789999999998 5666554
No 103
>PRK06922 hypothetical protein; Provisional
Probab=99.20 E-value=1.6e-10 Score=109.28 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=79.6
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++.+|||+|||+|..+..+++. +.+|+++|+++ .|++.++++...++.++.+...+..+......+++||+|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~--~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE--NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 46789999999999998888875 45999999995 699999988876666666666555443212345689999998
Q ss_pred CCcCC-------------CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYD-------------ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~-------------~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++++ ......+++.+.++|+ |||.+++.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK--PGGrLII~ 536 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK--PGGRIIIR 536 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcC--CCcEEEEE
Confidence 87754 2456889999999998 56655554
No 104
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.17 E-value=9.6e-10 Score=91.60 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~ 132 (241)
++..+..++.......++.+|||+|||+|..+..+++.+.+|+++|+++ ++++.+++|+..++. ++++...+..+..
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIK--TLQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCH--HHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 3444445554444455778999999999999999998877999999995 799999999987766 4666665543321
Q ss_pred cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 133 ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
. ...+||+|++...+. .+.+.+.++|+ +||.+++...
T Consensus 140 ~--~~~~fD~I~~~~~~~------~~~~~l~~~L~--~gG~lv~~~~ 176 (212)
T PRK00312 140 P--AYAPFDRILVTAAAP------EIPRALLEQLK--EGGILVAPVG 176 (212)
T ss_pred C--cCCCcCEEEEccCch------hhhHHHHHhcC--CCcEEEEEEc
Confidence 1 125799999865443 33456778887 6677666654
No 105
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=9.6e-10 Score=91.83 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
-++-.+..++.......++.+|||+|||+|..+..+++. + .+|+++|+++ ++++.+++|++.++. ++++...|.
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~--~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP--ELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCeEEEECCc
Confidence 344555555555555567889999999999999998886 3 4899999995 799999999988776 466665553
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 129 GFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
.... ....+||+|++...+.+ +.+.+.+.|+ +||.+++..
T Consensus 137 ~~~~--~~~~~fD~I~~~~~~~~------~~~~l~~~Lk--pgG~lvi~~ 176 (212)
T PRK13942 137 TLGY--EENAPYDRIYVTAAGPD------IPKPLIEQLK--DGGIMVIPV 176 (212)
T ss_pred ccCC--CcCCCcCEEEECCCccc------chHHHHHhhC--CCcEEEEEE
Confidence 3221 12358999998654432 3345667887 667776654
No 106
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.16 E-value=2.6e-09 Score=85.91 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=72.6
Q ss_pred HHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCC
Q 026274 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 61 ~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~f 140 (241)
.+........+.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++|+.. ..++++...|..+... .+.+|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~-~~~v~ii~~D~~~~~~--~~~~~ 78 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAA-ADNLTVIHGDALKFDL--PKLQP 78 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhcc-CCCEEEEECchhcCCc--cccCC
Confidence 333333445677999999999999999999988999999996 699999988854 2356666666655421 22369
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+|+++. .|+.. .+++..+......-+++++++-.
T Consensus 79 d~vi~n~-Py~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNL-PYNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECC-CcccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 9998764 45532 33333333222122566666653
No 107
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=5.3e-10 Score=102.36 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=109.1
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~ 132 (241)
.+..|..+........++.++||+-||.|.+|+.+|+...+|+++++++ ++++.+++|++.|++. +.+...+-.+..
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~--~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISP--EAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCH--HHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 3455666666655556778999999999999999999999999999995 7999999999999985 777766655543
Q ss_pred cCc-CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE--ecCCCCCC
Q 026274 133 ASI-FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL--VDGFSFLP 209 (241)
Q Consensus 133 ~~~-~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i--~~~~~~~p 209 (241)
... ....||+|+..++-- ...+.+++.+.++ ++..++|+++.+-........ +...|+.+..+ .|+|.+++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~--G~~~~~lk~l~~~---~p~~IvYVSCNP~TlaRDl~~-L~~~gy~i~~v~~~DmFP~T~ 428 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRA--GADREVLKQLAKL---KPKRIVYVSCNPATLARDLAI-LASTGYEIERVQPFDMFPHTH 428 (432)
T ss_pred hhccccCCCCEEEECCCCC--CCCHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHH-HHhCCeEEEEEEEeccCCCcc
Confidence 322 124789999643322 1334666666655 477889998877554444444 35678777766 88888887
Q ss_pred ccc
Q 026274 210 HYK 212 (241)
Q Consensus 210 ~~~ 212 (241)
|.+
T Consensus 429 HvE 431 (432)
T COG2265 429 HVE 431 (432)
T ss_pred ccC
Confidence 764
No 108
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.15 E-value=1.7e-09 Score=86.74 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=96.6
Q ss_pred ccHHHHHHHHHhccC---CCCCC-eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEE
Q 026274 53 PCSVILAEYVWQQRY---RFSGA-NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVM 124 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~---~~~~~-~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~ 124 (241)
++-..+.+|+..+.. ..+.. +|||||||.|.+-.-|++.|. +.+++|+++ ++++.|+..++.++.. ++++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~--~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE--KAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH--HHHHHHHHHHHhcCCCcceeEE
Confidence 455677888876543 22333 899999999999999999887 599999996 6999988888888875 8999
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCC---cCC-C----ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCC
Q 026274 125 GLTWGFLDASIFDLNPNIILGADV---FYD-A----SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGL 196 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dv---ly~-~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 196 (241)
++|..++ ..+..+||+|+--.+ +-- + .-+..-+..+.++|+ ++++|++...+..-.++.+. .+..||
T Consensus 124 q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~--~~gifvItSCN~T~dELv~~-f~~~~f 198 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS--PGGIFVITSCNFTKDELVEE-FENFNF 198 (227)
T ss_pred EeeccCC--cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC--CCcEEEEEecCccHHHHHHH-HhcCCe
Confidence 9988765 344568888863322 211 1 122445688999998 77877776444333333333 345666
Q ss_pred EEEE
Q 026274 197 KCVK 200 (241)
Q Consensus 197 ~~~~ 200 (241)
....
T Consensus 199 ~~~~ 202 (227)
T KOG1271|consen 199 EYLS 202 (227)
T ss_pred EEEE
Confidence 5543
No 109
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.14 E-value=3.1e-09 Score=85.96 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=89.3
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC-CCcE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL-NPNI 142 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~-~fDl 142 (241)
...+|.+++|+|||||-+++.++..+. +|+++|.++ ++++.+++|++..+. ++.+...+.-+.. .+. +||.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L---~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARFGVDNLEVVEGDAPEAL---PDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCCcEEEEeccchHhh---cCCCCCCE
Confidence 445788999999999999999997654 899999996 799999999998875 4555544333222 222 6999
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCC-EEEEE
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGL-KCVKL 201 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~i 201 (241)
|+..-- ..++.+++++...|+ +++.+++..-.-.........++++|+ +++.+
T Consensus 106 iFIGGg----~~i~~ile~~~~~l~--~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 106 IFIGGG----GNIEEILEAAWERLK--PGGRLVANAITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred EEECCC----CCHHHHHHHHHHHcC--cCCeEEEEeecHHHHHHHHHHHHHcCCceEEEE
Confidence 987644 688999999999998 566666554332222223334678888 66665
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.14 E-value=2.2e-09 Score=96.67 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=79.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.+..+||||||+|...+.+|+.. ..++|+|+++ .++..+.+++..+++ ++.+...|.........++++|.|+.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~--~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHT--PSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 45689999999999999999974 5899999995 699999999988876 577777776543333445789999876
Q ss_pred CCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 147 DVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 147 dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
-+..++. ..+.+++.+.++|+ +||.+.+....
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLk--pGG~l~l~TD~ 237 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLK--PGGTLELRTDS 237 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcC--CCcEEEEEEEC
Confidence 4333322 12689999999998 56666665444
No 111
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.13 E-value=8e-10 Score=92.37 Aligned_cols=119 Identities=17% Similarity=0.052 Sum_probs=81.0
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-------------cCCc
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------------NKLN 120 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-------------n~~~ 120 (241)
....|.+++..... .++.+|||+|||.|.-++++|++|.+|+++|+|+ .+++.+...... .+.+
T Consensus 19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~--~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (213)
T TIGR03840 19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSE--IAVEQFFAENGLTPTVTQQGEFTRYRAGN 95 (213)
T ss_pred CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCH--HHHHHHHHHcCCCcceeccccceeeecCc
Confidence 45566677654321 2567999999999999999999999999999996 588765331111 1234
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCe-EEEEEe
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGS-VFITTY 178 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~-~~~~~~ 178 (241)
+++...|..+.... ...+||.|+-.-++.+. +..+..++.+.++|+ ||| ++++++
T Consensus 96 v~~~~~D~~~~~~~-~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk--pgG~~ll~~~ 153 (213)
T TIGR03840 96 IEIFCGDFFALTAA-DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP--PGARQLLITL 153 (213)
T ss_pred eEEEEccCCCCCcc-cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC--CCCeEEEEEE
Confidence 55666665543221 12479999987776553 455678999999998 444 455554
No 112
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.12 E-value=3.6e-09 Score=88.78 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-------------cCCc
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------------NKLN 120 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-------------n~~~ 120 (241)
..-.|.+|+.... ..++.+||++|||.|.-+++||++|.+|+++|+++ .+++.+...... ...+
T Consensus 22 p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 22 VNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFFAENGLTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHHHHcCCCccccccccccccccCc
Confidence 3445556664321 13567999999999999999999999999999996 588765321100 1123
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhc
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQS 168 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~ 168 (241)
+++...|..+.... ....||.|+-.-++.+. +.....++.+.++|++
T Consensus 99 v~~~~~D~~~l~~~-~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 99 ITIYCGDFFALTAA-DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA 147 (218)
T ss_pred eEEEECcccCCCcc-cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence 45555554443211 12379999987776553 4567889999999984
No 113
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=1.5e-09 Score=93.24 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=83.0
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
+.+|||+|||+|.+++.+++. +.+|+++|+++ .|++.+++|.. ++.+...|..+. ....+||+|+++++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp--~al~~Ar~n~~----~v~~v~~D~~e~---~~~~kFDlIIsNPP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP--EFARIGKRLLP----EAEWITSDVFEF---ESNEKFDVVISNPP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHhCc----CCEEEECchhhh---cccCCCcEEEEcCC
Confidence 458999999999999988875 45999999995 69998888642 344444444332 12358999999999
Q ss_pred cCCCcc--------------------HHHHHHHHHHHhhcCCCeEEEEEeeccCc------hhHHHHHHHHcCCEEEE
Q 026274 149 FYDASA--------------------FDDLFATITYLLQSSPGSVFITTYHNRSG------HHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 149 ly~~~~--------------------~~~ll~~~~~lL~~~~~~~~~~~~~~r~~------~~~~~~~~~~~g~~~~~ 200 (241)
+++... +..+++....+|++ +|.+++++..+.. ......++++.||....
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p--~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP--TGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC--CceEEEEEeccccccccCCHHHHHHHHHhcCcEecC
Confidence 987321 35677777888874 4455555443322 34556678899998654
No 114
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.11 E-value=7.3e-10 Score=95.57 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCH----HHHHHHHh-------CCEEEEEcCCCcHHHHHHHHHHHH----HcC----------------
Q 026274 70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVCE----MNK---------------- 118 (241)
Q Consensus 70 ~~~~VLElGcGtGl----~sl~la~~-------g~~V~~tD~~~~~~~l~~~~~n~~----~n~---------------- 118 (241)
++.+|+|+|||||- +++.+++. +.+|++||+|+ +||+.+++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~--~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL--KALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH--HHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 45799999999995 45666654 24899999995 69999987541 011
Q ss_pred --------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 119 --------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 119 --------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..+.+...+..+.. ...++||+|++..++.|.+ ....+++.+.++|+ |||.+++++.
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~--~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~--pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAES--PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK--PGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCC--CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC--CCeEEEEECc
Confidence 13455555554432 2356899999999997764 56689999999998 7888888753
No 115
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.10 E-value=1.8e-09 Score=88.76 Aligned_cols=90 Identities=8% Similarity=0.004 Sum_probs=67.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.+.+|||+|||+|..+..+++. +.+++++|+++ ++++.++. ++ +++...+..+...+..+.+||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~~----~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACVA----RG--VNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHHH----cC--CeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 4678999999999998888764 55899999995 57776643 23 3455555543222233468999999999
Q ss_pred cCCCccHHHHHHHHHHHhh
Q 026274 149 FYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~ 167 (241)
++|..+...+++.+.+.++
T Consensus 85 l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGR 103 (194)
T ss_pred hHcCcCHHHHHHHHHHhCC
Confidence 9999999999888877754
No 116
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.10 E-value=6.6e-10 Score=99.64 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=97.8
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeec
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w 128 (241)
.-+.....|.+++.......++ +||||-||+|.+|+.+|+.+.+|+++|+++ ++++.+++|++.|++ ++++...+.
T Consensus 177 vN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 177 VNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHcCCCcceEEEeec
Confidence 3455666777777665554444 799999999999999999999999999995 799999999999998 467766544
Q ss_pred CCCCcC--------------cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHc
Q 026274 129 GFLDAS--------------IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKW 194 (241)
Q Consensus 129 ~~~~~~--------------~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 194 (241)
.+.... .....+|+|+.-++--- ..+.+++.+. + ..-++|+++.+.........+.+
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G--~~~~~~~~~~---~--~~~ivYvSCnP~tlaRDl~~L~~-- 324 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG--LDEKVIELIK---K--LKRIVYVSCNPATLARDLKILKE-- 324 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHHHHHHHH---H--SSEEEEEES-HHHHHHHHHHHHC--
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC--chHHHHHHHh---c--CCeEEEEECCHHHHHHHHHHHhh--
Confidence 332110 11226898886443322 2234444443 2 35789999888766666666643
Q ss_pred CCEEEEE--ecCCCCCCcccc
Q 026274 195 GLKCVKL--VDGFSFLPHYKA 213 (241)
Q Consensus 195 g~~~~~i--~~~~~~~p~~~~ 213 (241)
||++..+ .|+|+.++|.+.
T Consensus 325 ~y~~~~v~~~DmFP~T~HvE~ 345 (352)
T PF05958_consen 325 GYKLEKVQPVDMFPQTHHVET 345 (352)
T ss_dssp CEEEEEEEEE-SSTTSS--EE
T ss_pred cCEEEEEEEeecCCCCCcEEE
Confidence 8888877 888888877754
No 117
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=1e-10 Score=99.95 Aligned_cols=126 Identities=29% Similarity=0.474 Sum_probs=87.6
Q ss_pred CcceEEeccHHHHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHH-----HHHHHHHH
Q 026274 46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-----NMRRVCEM 116 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~-----~~~~n~~~ 116 (241)
..|+++|.++..|..++... .-.+.+++|||||||+|+.++.+...|+ .+.+.|++. +.++ ++..|...
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na--~vl~~~t~pn~~~~~~~ 166 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA--EVLRLVTLPNILVNSHA 166 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecch--hheeeecccceecchhh
Confidence 58899999999999999854 4567899999999999999999999995 899999994 5662 22222211
Q ss_pred c------CCceEEEEe---ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHH-HHHHHHHhhcCCCeEEEEE
Q 026274 117 N------KLNCRVMGL---TWGFLDASIFDLNPNIILGADVFYDASAFDDL-FATITYLLQSSPGSVFITT 177 (241)
Q Consensus 117 n------~~~~~~~~l---~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~l-l~~~~~lL~~~~~~~~~~~ 177 (241)
+ .....+..- ||.-.... ...||+|+++..+|.....+.+ ......+++ ++++++.+
T Consensus 167 ~~~~~e~~~~~~i~~s~l~dg~~~~t~--~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~--~D~~~~~a 233 (282)
T KOG2920|consen 167 GVEEKENHKVDEILNSLLSDGVFNHTE--RTHYDLILSSETIYSIDSLAVLYLLHRPCLLK--TDGVFYVA 233 (282)
T ss_pred hhhhhhcccceeccccccccchhhhcc--ccchhhhhhhhhhhCcchhhhhHhhhhhhcCC--ccchhhhh
Confidence 1 111122222 45211111 1389999999999999999888 455555544 56665554
No 118
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.09 E-value=1.1e-09 Score=89.17 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
+|.+|||||||.|.+-..|.. ++.+..++|+++ +.+ .+ +-.+|++ +.+.|..+......+.+||+||.+.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~--~~v---~~-cv~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP--DNV---AA-CVARGVS--VIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH--HHH---HH-HHHcCCC--EEECCHHHhHhhCCCCCccEEehHhH
Confidence 578999999999966666665 678999999996 222 22 2235665 57888887766677889999999999
Q ss_pred cCCCccHHHHHHHHHHH
Q 026274 149 FYDASAFDDLFATITYL 165 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~l 165 (241)
+.+....+.+++.+.++
T Consensus 85 LQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV 101 (193)
T ss_pred HHhHhHHHHHHHHHHHh
Confidence 99999999998887666
No 119
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.08 E-value=4.3e-09 Score=92.55 Aligned_cols=108 Identities=9% Similarity=0.081 Sum_probs=79.0
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI 135 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~ 135 (241)
+.+.......++.+|||+|||+|..++.+++.. .+++++|.. ++++.+++|+...+.. +++...|..+. +
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~---~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~- 212 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP---GAIDLVNENAAEKGVADRMRGIAVDIYKE--S- 212 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecH---HHHHHHHHHHHhCCccceEEEEecCccCC--C-
Confidence 333333344456799999999999999999874 489999984 5999999999888763 56666655432 2
Q ss_pred CCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 136 FDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
. ..+|+|+.+.++|+.. ....+++.+.+.|+ |||.+++
T Consensus 213 ~-~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~--pgG~l~i 252 (306)
T TIGR02716 213 Y-PEADAVLFCRILYSANEQLSTIMCKKAFDAMR--SGGRLLI 252 (306)
T ss_pred C-CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcC--CCCEEEE
Confidence 2 2479999999988653 34679999999998 4454443
No 120
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.07 E-value=1.1e-08 Score=85.25 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
.+.|.+.........++.+|||||||||.++..+++.. .+|+++|+++ |. +..++.+.+.|+.+.
T Consensus 36 ~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~---------~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 36 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MD---------PIVGVDFLQGDFRDE 103 (209)
T ss_pred HHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---cc---------CCCCcEEEecCCCCh
Confidence 33343333333334567899999999999999888863 3899999985 21 112356777777653
Q ss_pred C------cCcCCCCCcEEEEcCCcCCCcc-----------HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 132 D------ASIFDLNPNIILGADVFYDASA-----------FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 132 ~------~~~~~~~fDlIl~~dvly~~~~-----------~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
. ......+||+|+++.+.+.... ...+++.+.++|+ +||.+++..
T Consensus 104 ~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk--pGG~~vi~~ 165 (209)
T PRK11188 104 LVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA--PGGSFVVKV 165 (209)
T ss_pred HHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC--CCCEEEEEE
Confidence 2 1123468999998765544321 2568899999998 566666643
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=4.1e-09 Score=96.85 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=85.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.+|.+|||+|||+|..++.+++.+ .+|+++|+++ .+++.+++|++.++..+++...|..+........+||.|++.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~--~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDA--QRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 467899999999999999999874 4899999996 699999999999988777666665432111123579999965
Q ss_pred CCcCCC---------------c-------cHHHHHHHHHHHhhcCCCeEEEEEe---eccCchhHHHHHHHHc-CCEEEE
Q 026274 147 DVFYDA---------------S-------AFDDLFATITYLLQSSPGSVFITTY---HNRSGHHLIEFLMVKW-GLKCVK 200 (241)
Q Consensus 147 dvly~~---------------~-------~~~~ll~~~~~lL~~~~~~~~~~~~---~~r~~~~~~~~~~~~~-g~~~~~ 200 (241)
.+.... . ....+++...++|+ |||.++.+. ........+..+++++ +|.+..
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk--pGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK--PGGTLLYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 443211 1 12468888999998 445444332 2233334455555444 666543
No 122
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.05 E-value=5e-10 Score=93.44 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=72.7
Q ss_pred eEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC-CCCcCcC--CCCCcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG-FLDASIF--DLNPNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~-~~~~~~~--~~~fDlIl~~dvl 149 (241)
.++|+|||+|..++.+|..-.+|++||+++ +||+.+++.-....... ..... +...++. +++.|+|+++.++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~--~mL~~a~k~~~~~y~~t---~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSE--AMLKVAKKHPPVTYCHT---PSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCH--HHHHHhhcCCCcccccC---CccccccccccccCCCcceeeehhhhhH
Confidence 799999999999999999877999999996 69987765322111111 00111 1111222 5699999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
++. +++.+.+.++++|++++|.+.+-.|.
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 886 67799999999999876666666665
No 123
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.04 E-value=2.3e-09 Score=76.76 Aligned_cols=100 Identities=25% Similarity=0.266 Sum_probs=75.9
Q ss_pred eEEEecCCCCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+++|+|||+|..+..+++ .+.+++++|.++ ++++.++++...+. ..+++...++.+... ....+||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999988887 455999999996 57777775433332 356666666665432 1345899999999999
Q ss_pred C-CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 151 D-ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 151 ~-~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+ ......+++.+.++++ ++|.+++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~--~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLK--PGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcC--CCCEEEEE
Confidence 8 8899999999999997 56666654
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=1.5e-08 Score=93.66 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=91.3
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w 128 (241)
.++..++.++. ..++.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++.+++. +++...|+
T Consensus 237 ~~s~lv~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~--~~l~~~~~n~~~~g~~~v~~~~~D~ 310 (444)
T PRK14902 237 ESSMLVAPALD----PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE--HKLKLIEENAKRLGLTNIETKALDA 310 (444)
T ss_pred hHHHHHHHHhC----CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 34445554442 245679999999999999999885 34899999995 6999999999988863 56666666
Q ss_pred CCCCcCcCCCCCcEEEEcCCcCCCc---------------c-------HHHHHHHHHHHhhcCCCeEEE-EEe--eccCc
Q 026274 129 GFLDASIFDLNPNIILGADVFYDAS---------------A-------FDDLFATITYLLQSSPGSVFI-TTY--HNRSG 183 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~dvly~~~---------------~-------~~~ll~~~~~lL~~~~~~~~~-~~~--~~r~~ 183 (241)
.+.... ...+||+|++..+.+... . ...+++.+.++|+ +||.++ .++ .....
T Consensus 311 ~~~~~~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk--pGG~lvystcs~~~~En 387 (444)
T PRK14902 311 RKVHEK-FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK--KGGILVYSTCTIEKEEN 387 (444)
T ss_pred ccccch-hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC--CCCEEEEEcCCCChhhh
Confidence 543222 225799999754432211 1 2457888889998 455444 322 22223
Q ss_pred hhHHHHHHHHc-CCEEEEE
Q 026274 184 HHLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 184 ~~~~~~~~~~~-g~~~~~i 201 (241)
...+..+++++ +|+...+
T Consensus 388 e~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 388 EEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHHHHhCCCcEEecc
Confidence 33455556655 4776655
No 125
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.03 E-value=7.5e-09 Score=87.14 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=94.1
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--------CCEEEEEcCCCcHHHHHHHHHHHHHcCCc----eEEEEeecCCCCcC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRVMGLTWGFLDAS 134 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~----~~~~~l~w~~~~~~ 134 (241)
...++.++||++||||-++.-+.+. ..+|++.|+|+ +||...++.+...++. ..+...|..+ .+
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp--~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~--Lp 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP--HMLAVGKQRAKKRPLKASSRVEWVEGDAED--LP 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH--HHHHHHHHHHhhcCCCcCCceEEEeCCccc--CC
Confidence 4567799999999999887777664 14899999995 7999888888665553 2333333333 24
Q ss_pred cCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 135 IFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
..+.+||....+--|-+..+++..+++.+++|| |||.|++---.....+.+.++..++-|++..+
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLK--pGGrf~cLeFskv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLK--PGGRFSCLEFSKVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHHHHHHhcC--CCcEEEEEEccccccHHHHHHHHhhhhhhhch
Confidence 556799999999889999999999999999999 56655533222233345677788888877554
No 126
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.9e-09 Score=88.03 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=77.8
Q ss_pred eEEEecCCCCHHHHHHH-HhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceE-EEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCR-VMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la-~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~-~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
.|||+|||||..--+.- +.+.+|++.|-++ .|-+.+.+.+..+.. ++. ++..+-.+ ...+.+.++|+|++.=|+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~--~mee~~~ks~~E~k~~~~~~fvva~ge~-l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNE--KMEEIADKSAAEKKPLQVERFVVADGEN-LPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcH--HHHHHHHHHHhhccCcceEEEEeechhc-CcccccCCeeeEEEEEEE
Confidence 58999999995544443 2466999999996 588888888877643 343 44433333 234567899999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
....+....++.+.++|+ |||.+++--|-+..
T Consensus 156 CSve~~~k~L~e~~rlLR--pgG~iifiEHva~~ 187 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLR--PGGRIIFIEHVAGE 187 (252)
T ss_pred eccCCHHHHHHHHHHhcC--CCcEEEEEeccccc
Confidence 999999999999999998 56655554444433
No 127
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.01 E-value=7.4e-10 Score=90.45 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc--CCCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI--FDLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~--~~~~fDlI 143 (241)
..|.++|||-||||.+|+.+.++|| +|+++|.+. .++..+++|++.-+.. +.+...|........ ...+||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 6899999999999999999999998 899999995 7999999999987764 444444432222111 24689999
Q ss_pred EEcCCcCCCcc-HHHHHHHHH--HHhhcCCCeEEEEEeeccC
Q 026274 144 LGADVFYDASA-FDDLFATIT--YLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 144 l~~dvly~~~~-~~~ll~~~~--~lL~~~~~~~~~~~~~~r~ 182 (241)
++ |+-|.... ...+++.+. .+|+ +++++++.+..+.
T Consensus 119 fl-DPPY~~~~~~~~~l~~l~~~~~l~--~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 119 FL-DPPYAKGLYYEELLELLAENNLLN--EDGLIIIEHSKKE 157 (183)
T ss_dssp EE---STTSCHHHHHHHHHHHHTTSEE--EEEEEEEEEETTS
T ss_pred EE-CCCcccchHHHHHHHHHHHCCCCC--CCEEEEEEecCCC
Confidence 85 56666665 488888877 5665 7889999887763
No 128
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.01 E-value=6.4e-09 Score=91.37 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCC---CCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDL---NPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~---~fD 141 (241)
.+.+|||||||||..+..+++. +.+|+++|+|+ +||+.+++++.... +++.....|..+.. +.... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~--~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA--DALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRR 139 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH--HHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCe
Confidence 5678999999999998888876 56999999996 79999988876543 45555555554321 11111 133
Q ss_pred -EEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 142 -IILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 142 -lIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
+++..-++++. +....+++.+.+.|+ |||.++++......
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~--pgG~~lig~d~~~~ 182 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLG--PGGGLLIGVDLVKD 182 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcC--CCCEEEEeccCCCC
Confidence 44444566654 456789999999998 67888876544433
No 129
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.98 E-value=2e-08 Score=88.67 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=59.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHc-CCc--eEEEE-eecCCCCcCc--CCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLN--CRVMG-LTWGFLDASI--FDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~--~~~~~-l~w~~~~~~~--~~~~fD 141 (241)
.+.++||||||+|.+...++.. +.++++||+++ .+++.+++|++.| ++. +.+.. -+-.+..... ..++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~--~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDP--QALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 4578999999999777666654 66999999995 7999999999999 664 33322 1212211111 245899
Q ss_pred EEEEcCCcCCCc
Q 026274 142 IILGADVFYDAS 153 (241)
Q Consensus 142 lIl~~dvly~~~ 153 (241)
+|++++++|...
T Consensus 192 livcNPPf~~s~ 203 (321)
T PRK11727 192 ATLCNPPFHASA 203 (321)
T ss_pred EEEeCCCCcCcc
Confidence 999999988654
No 130
>PHA03412 putative methyltransferase; Provisional
Probab=98.98 E-value=5.3e-09 Score=88.03 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=68.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-----CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-----g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+.+|||+|||+|.+++.+++. ..+|+++|+++ .+++.+++|.. .+.+...|.... ..+.+||+||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~--~Al~~Ar~n~~----~~~~~~~D~~~~---~~~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH--TYYKLGKRIVP----EATWINADALTT---EFDTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH--HHHHHHHhhcc----CCEEEEcchhcc---cccCCccEEE
Confidence 4679999999999999999874 34899999996 69999998763 244444444322 1345899999
Q ss_pred EcCCcCCCc------------cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDAS------------AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~------------~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++++++... ....++....++++ +|+. +++
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~--~G~~-ILP 161 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIAR--QGTF-IIP 161 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcC--CCEE-EeC
Confidence 999988432 25567888888765 5554 443
No 131
>PLN03075 nicotianamine synthase; Provisional
Probab=98.97 E-value=1.3e-08 Score=88.49 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=78.4
Q ss_pred CCCeEEEecCCCC-HHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHH-cCC--ceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTS-LPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEM-NKL--NCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtG-l~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~-n~~--~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.+++|+|+|||.| +.++.+++. +.+++++|+++ ++++.+++++.. .++ .++|...|..+... ...+||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--SANDVARRLVSSDPDLSKRMFFHTADVMDVTE--SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHhhhccCccCCcEEEECchhhccc--ccCCcCE
Confidence 6789999999955 767777653 34899999995 799999999864 443 47777777655321 1357999
Q ss_pred EEEcCCcCC-CccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYD-ASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~-~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|++.-++|. .+..+.+++.+.+.|+ |||.+++..
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~Lk--PGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMA--PGALLMLRS 233 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcC--CCcEEEEec
Confidence 999944444 3899999999999998 778887774
No 132
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=3.7e-08 Score=85.50 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=92.0
Q ss_pred cceEEeccHH-HHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC
Q 026274 47 YGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (241)
Q Consensus 47 ~g~~~W~~s~-~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (241)
.-.++|.--. .|+.-|... ....++.+|||||||+|..+..+|.. + ..|+++|+++ .|++.+...+... .
T Consensus 105 ~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~--r~~~dLl~~ak~r-~ 181 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH--RSGRDLTNMAKKR-P 181 (293)
T ss_pred ceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH--HHHHHHHHHhhhc-C
Confidence 4489997532 344344322 23457889999999999999999986 3 3799999995 5665554433321 2
Q ss_pred ceEEEEeecCCCC-cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCch------hHH---HH
Q 026274 120 NCRVMGLTWGFLD-ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGH------HLI---EF 189 (241)
Q Consensus 120 ~~~~~~l~w~~~~-~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~------~~~---~~ 189 (241)
++.+...|..... ......++|+|++.- ..+.....++..+.++|+ +++.|++....+... ..+ ..
T Consensus 182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LK--pGG~~vI~ika~~id~g~~pe~~f~~ev~ 257 (293)
T PTZ00146 182 NIVPIIEDARYPQKYRMLVPMVDVIFADV--AQPDQARIVALNAQYFLK--NGGHFIISIKANCIDSTAKPEVVFASEVQ 257 (293)
T ss_pred CCEEEECCccChhhhhcccCCCCEEEEeC--CCcchHHHHHHHHHHhcc--CCCEEEEEEeccccccCCCHHHHHHHHHH
Confidence 3444444443221 011224799998654 245566677778999998 556666554433321 111 23
Q ss_pred HHHHcCCEEEEEec
Q 026274 190 LMVKWGLKCVKLVD 203 (241)
Q Consensus 190 ~~~~~g~~~~~i~~ 203 (241)
.+++.||+.....+
T Consensus 258 ~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 258 KLKKEGLKPKEQLT 271 (293)
T ss_pred HHHHcCCceEEEEe
Confidence 46788999887743
No 133
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.97 E-value=4.3e-09 Score=89.25 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=76.5
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc----CC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI----FD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~----~~ 137 (241)
...+.++|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++.+++. +++...++.+....+ ..
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 3456789999999999988888764 34999999995 7999999999999874 566666654432211 13
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+||+|+.. . ..+....+++.+.++|+ +||++++.
T Consensus 143 ~~fD~VfiD-a--~k~~y~~~~~~~~~ll~--~GG~ii~d 177 (234)
T PLN02781 143 PEFDFAFVD-A--DKPNYVHFHEQLLKLVK--VGGIIAFD 177 (234)
T ss_pred CCCCEEEEC-C--CHHHHHHHHHHHHHhcC--CCeEEEEE
Confidence 589999863 2 12456678888889998 67777764
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.3e-09 Score=86.78 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=94.0
Q ss_pred cceEEEEeecCCCCCCceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEE
Q 026274 18 MTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTL 97 (241)
Q Consensus 18 ~~~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~ 97 (241)
|..+.|+.|-+.. +.=.-..++.-..|.-.|-++-.+...+.......++.+|||||||+|..+-.+|+...+|+.
T Consensus 24 ~~~vPRe~FVp~~----~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~s 99 (209)
T COG2518 24 FLAVPRELFVPAA----YKHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVS 99 (209)
T ss_pred HHhCCHHhccCch----hhcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEE
Confidence 4455666665532 111112222233444455555555555555556678899999999999999999999889999
Q ss_pred EcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 98 TDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 98 tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
+|..+ ++.+.+++|.+..+. ++.+...|-.....+ ..+||.|+.+-..- .+-+.+.+.|+ +||..++
T Consensus 100 iEr~~--~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~--~aPyD~I~Vtaaa~------~vP~~Ll~QL~--~gGrlv~ 167 (209)
T COG2518 100 IERIE--ELAEQARRNLETLGYENVTVRHGDGSKGWPE--EAPYDRIIVTAAAP------EVPEALLDQLK--PGGRLVI 167 (209)
T ss_pred EEEcH--HHHHHHHHHHHHcCCCceEEEECCcccCCCC--CCCcCEEEEeeccC------CCCHHHHHhcc--cCCEEEE
Confidence 99995 699999999998887 666665553322111 24899998643332 23344556676 5666665
Q ss_pred Eee
Q 026274 177 TYH 179 (241)
Q Consensus 177 ~~~ 179 (241)
+..
T Consensus 168 PvG 170 (209)
T COG2518 168 PVG 170 (209)
T ss_pred EEc
Confidence 544
No 135
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.96 E-value=8.4e-08 Score=78.43 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=70.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
+.+.+.........++.+|||+|||+|.++..+++.. .+|+++|+++. + . ..++.+...++.+..
T Consensus 18 ~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------~--~~~i~~~~~d~~~~~ 85 (188)
T TIGR00438 18 FKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------P--IENVDFIRGDFTDEE 85 (188)
T ss_pred HHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------c--CCCceEEEeeCCChh
Confidence 3455555555566688999999999999988888763 37999999962 2 1 123455666665421
Q ss_pred c------CcCCCCCcEEEEcCCcC-----CCc------cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 133 A------SIFDLNPNIILGADVFY-----DAS------AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 133 ~------~~~~~~fDlIl~~dvly-----~~~------~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
. .....+||+|++.-..+ ... ..+.+++.+.++|+ +||.+++.
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~lvi~ 145 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLK--PKGNFVVK 145 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc--CCCEEEEE
Confidence 0 12245799999753321 111 23678899999998 55555553
No 136
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.95 E-value=4.2e-09 Score=88.77 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=74.0
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHH-HHHHHHHHc-CCceEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRVCEMN-KLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~-~~~~n~~~n-~~~~~~~~l 126 (241)
.++.++..|...+.......++++|||+|||||.++..+++.|+ +|+++|+++ +++. .++.+.+-. -....+..+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~--~~l~~~l~~~~~v~~~~~~ni~~~ 132 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY--NQLAEKLRQDERVKVLERTNIRYV 132 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH--HHHHHHHhcCCCeeEeecCCcccC
Confidence 67899999999998877667899999999999999999999987 899999996 3554 355443210 001122345
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
+|.+...+. ..+|++++|- ..++..+..+|++
T Consensus 133 ~~~~~~~d~--~~~DvsfiS~--------~~~l~~i~~~l~~ 164 (228)
T TIGR00478 133 TPADIFPDF--ATFDVSFISL--------ISILPELDLLLNP 164 (228)
T ss_pred CHhHcCCCc--eeeeEEEeeh--------HhHHHHHHHHhCc
Confidence 666543111 2567666542 2357788888874
No 137
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.94 E-value=9.1e-09 Score=84.72 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..-.+|.|||||+|.....++++ ++.++++|-|+ +|++.++. ...++++...|..++. .+.+.|+|+++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~--~Mla~Aa~----rlp~~~f~~aDl~~w~---p~~~~dllfaN 99 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP--AMLAKAAQ----RLPDATFEEADLRTWK---PEQPTDLLFAN 99 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH--HHHHHHHH----hCCCCceecccHhhcC---CCCccchhhhh
Confidence 34568999999999999999887 67999999995 79987754 4556777666655442 23479999999
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
-++.+.+++..++..+-..|. |||++-+-
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~--Pgg~LAVQ 128 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLA--PGGVLAVQ 128 (257)
T ss_pred hhhhhccccHHHHHHHHHhhC--CCceEEEE
Confidence 999999999999999999998 66665544
No 138
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.94 E-value=3.1e-08 Score=85.80 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=64.5
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+++.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ +|++.++++... .++.+...|+.+...+ +
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~--~~~~~~~~~~~~--~~v~~i~~D~~~~~~~--~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDR--DLAPILAETFAE--DNLTIIEGDALKVDLS--E 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCH--HHHHHHHHhhcc--CceEEEEChhhcCCHH--H
Confidence 445555544455778999999999999999999988999999996 699999887743 4567777777654221 1
Q ss_pred CCCcEEEEcCCcCCC
Q 026274 138 LNPNIILGADVFYDA 152 (241)
Q Consensus 138 ~~fDlIl~~dvly~~ 152 (241)
..++.|+++-+ |+.
T Consensus 104 ~~~~~vv~NlP-Y~i 117 (272)
T PRK00274 104 LQPLKVVANLP-YNI 117 (272)
T ss_pred cCcceEEEeCC-ccc
Confidence 11588888866 443
No 139
>PRK04148 hypothetical protein; Provisional
Probab=98.92 E-value=8.6e-09 Score=79.53 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=56.9
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCH-HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl-~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~ 135 (241)
.+++||..+....+++++||+|||+|. ++..|++.|.+|+++|+++ ++++.++++ + ..+...|+.+.....
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~----~--~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKL----G--LNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHh----C--CeEEECcCCCCCHHH
Confidence 477888876655677899999999996 9999999999999999996 566666554 3 345566665432211
Q ss_pred CCCCCcEEEE
Q 026274 136 FDLNPNIILG 145 (241)
Q Consensus 136 ~~~~fDlIl~ 145 (241)
-..+|+|.+
T Consensus 75 -y~~a~liys 83 (134)
T PRK04148 75 -YKNAKLIYS 83 (134)
T ss_pred -HhcCCEEEE
Confidence 124566654
No 140
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.91 E-value=3.5e-08 Score=87.32 Aligned_cols=109 Identities=16% Similarity=0.050 Sum_probs=73.3
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~ 133 (241)
+..++.+.....++.+|||+|||+|..+..+++.. .+|+++|+++ ++++.+++|++.++.. +.+...|..+...
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence 33344443344567899999999999999999863 2699999995 7999999999888763 5555544332211
Q ss_pred CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 134 SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
. ..+||+|+.+-.+. .+...+.+.|+ ++|.+++..
T Consensus 146 ~--~~~fD~Ii~~~g~~------~ip~~~~~~Lk--pgG~Lvv~~ 180 (322)
T PRK13943 146 E--FAPYDVIFVTVGVD------EVPETWFTQLK--EGGRVIVPI 180 (322)
T ss_pred c--cCCccEEEECCchH------HhHHHHHHhcC--CCCEEEEEe
Confidence 1 24799999864332 23345667787 566655543
No 141
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.90 E-value=9.1e-09 Score=89.69 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=74.5
Q ss_pred hccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCC
Q 026274 64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~f 140 (241)
.+...++++.|||+|||+|+++.++|+.|+ +|.+++.+ +|.+.+++-++.|++. +.++....++. ..+++.
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS---~MAqyA~~Lv~~N~~~~rItVI~GKiEdi---eLPEk~ 244 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS---EMAQYARKLVASNNLADRITVIPGKIEDI---ELPEKV 244 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh---HHHHHHHHHHhcCCccceEEEccCccccc---cCchhc
Confidence 455678999999999999999999999998 89999999 4999999999988774 44554444433 345789
Q ss_pred cEEEEcCC---cCCCccHHHHHHHHHHHhhcC
Q 026274 141 NIILGADV---FYDASAFDDLFATITYLLQSS 169 (241)
Q Consensus 141 DlIl~~dv---ly~~~~~~~ll~~~~~lL~~~ 169 (241)
|+||+-+. +++...++.-+..- +.|+|+
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~ 275 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHAR-KWLKPN 275 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHH-hhcCCC
Confidence 99996553 34445555554443 778754
No 142
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.89 E-value=4.5e-08 Score=84.72 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC-----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+.+|||+|||+|..+..+++.. .+|+++|+++ +|++.++++. .++.+...+..+. +..+++||+|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~--~~l~~A~~~~----~~~~~~~~d~~~l--p~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK--VAIKYAAKRY----PQVTFCVASSHRL--PFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH--HHHHHHHHhC----CCCeEEEeecccC--CCcCCceeEEE
Confidence 45689999999999988887652 3799999995 6888876642 3455555554432 33456899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.. .+ ..++.+.++|+ |||.+++.
T Consensus 157 ~~~---~~----~~~~e~~rvLk--pgG~li~~ 180 (272)
T PRK11088 157 RIY---AP----CKAEELARVVK--PGGIVITV 180 (272)
T ss_pred Eec---CC----CCHHHHHhhcc--CCCEEEEE
Confidence 753 22 23577889998 55555544
No 143
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=6.7e-08 Score=81.62 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=87.0
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHH-hCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~-~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fD 141 (241)
....|.+|||.|.|+|.++.++|+ .|. +|+..|+.+ +.++.|++|++.-++. +.+.. ++..+......||
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~--d~~k~A~~Nl~~~~l~d~v~~~~---~Dv~~~~~~~~vD 165 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE--DFAKTARENLSEFGLGDRVTLKL---GDVREGIDEEDVD 165 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH--HHHHHHHHHHHHhccccceEEEe---ccccccccccccC
Confidence 456889999999999999999997 343 899999995 7999999999986653 33333 4443334445899
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
.|+. +.+++...++.++.+|++++..++++++- .+..+..+ .+++.||.-.+.
T Consensus 166 av~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v-eQv~kt~~-~l~~~g~~~ie~ 218 (256)
T COG2519 166 AVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTV-EQVEKTVE-ALRERGFVDIEA 218 (256)
T ss_pred EEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCH-HHHHHHHH-HHHhcCccchhh
Confidence 9986 78899999999999999654444554432 11222222 245668765444
No 144
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=5.2e-08 Score=89.77 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=85.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcC--cCCCCCc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDAS--IFDLNPN 141 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~--~~~~~fD 141 (241)
..+|.+|||+|||+|..++.+++.. .+|+++|+++ ++++.+++|++.++. ++.+...|..+.... ....+||
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA--SRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH--HHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 3467899999999999999998862 4899999995 699999999999887 456665555433211 2245799
Q ss_pred EEEEcC------CcCCCcc----------------HHHHHHHHHHHhhcCCCeE-EEEE--eeccCchhHHHHHHHHc-C
Q 026274 142 IILGAD------VFYDASA----------------FDDLFATITYLLQSSPGSV-FITT--YHNRSGHHLIEFLMVKW-G 195 (241)
Q Consensus 142 lIl~~d------vly~~~~----------------~~~ll~~~~~lL~~~~~~~-~~~~--~~~r~~~~~~~~~~~~~-g 195 (241)
.|+... ++...++ ...+++.+.++|+ +||. +|.. ..+......+..+++++ +
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk--pgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK--PGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999632 2222221 4678888899998 4454 4443 23333344555566555 5
Q ss_pred CEEE
Q 026274 196 LKCV 199 (241)
Q Consensus 196 ~~~~ 199 (241)
|+..
T Consensus 406 ~~~~ 409 (434)
T PRK14901 406 WKLE 409 (434)
T ss_pred cEec
Confidence 7643
No 145
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=5.1e-08 Score=90.12 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=91.6
Q ss_pred eEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEE
Q 026274 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVM 124 (241)
Q Consensus 49 ~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~ 124 (241)
..+++.+..++..+.. ..+|.+|||+|||+|..++.+++. +.+|+++|+++ ++++.+++|++..++. +++.
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~--~~l~~~~~~~~~~g~~~v~~~ 306 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP--QKLEKIRSHASALGITIIETI 306 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHhCCCeEEEE
Confidence 4677655555555443 346789999999999999888874 34899999996 6999999999988874 5666
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCC------cC-------CC--c-------cHHHHHHHHHHHhhcCCCeEEEEEe-e--
Q 026274 125 GLTWGFLDASIFDLNPNIILGADV------FY-------DA--S-------AFDDLFATITYLLQSSPGSVFITTY-H-- 179 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dv------ly-------~~--~-------~~~~ll~~~~~lL~~~~~~~~~~~~-~-- 179 (241)
..|..+.. .+.+||+|+.-.+ +. .. . ....++..+.++|+ +||.++.+. .
T Consensus 307 ~~Da~~~~---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk--pgG~lvystcs~~ 381 (445)
T PRK14904 307 EGDARSFS---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK--PGGVLVYATCSIE 381 (445)
T ss_pred eCcccccc---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEeCCCC
Confidence 66654432 2357999985211 11 11 1 13468889999998 455444332 2
Q ss_pred ccCchhHHHHHHHHc-CCEEEE
Q 026274 180 NRSGHHLIEFLMVKW-GLKCVK 200 (241)
Q Consensus 180 ~r~~~~~~~~~~~~~-g~~~~~ 200 (241)
+......+..+++++ +|....
T Consensus 382 ~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 382 PEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred hhhHHHHHHHHHHhCCCCEEec
Confidence 222333445566555 566543
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.86 E-value=7.9e-08 Score=88.39 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=88.9
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEE--EEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV--MGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~--~~l~w 128 (241)
.++..++.++. ..+|.+|||+|||+|..++.+++. + ++|+++|+++ ++++.+++|++..+..+.+ ...+.
T Consensus 225 ~~s~~~~~~L~----~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~--~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 225 ASAQWVATWLA----PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHE--HRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred HHHHHHHHHhC----CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEecccc
Confidence 45666666653 346789999999999999999885 3 5999999996 6999999999998876544 32232
Q ss_pred CCCCcCcCCCCCcEEEEc------CCcCCCcc----------------HHHHHHHHHHHhhcCCCeEEEEEe--eccCch
Q 026274 129 GFLDASIFDLNPNIILGA------DVFYDASA----------------FDDLFATITYLLQSSPGSVFITTY--HNRSGH 184 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~~------dvly~~~~----------------~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~ 184 (241)
..........+||.|+.. .++...+. ...+++...++|++ +|.++|..+ ....+.
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvystcs~~~~Ene 377 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYATCSVLPEENS 377 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCChhhCH
Confidence 211110123579999853 23332222 36788889999984 233444332 223344
Q ss_pred hHHHHHHHHc-CCEE
Q 026274 185 HLIEFLMVKW-GLKC 198 (241)
Q Consensus 185 ~~~~~~~~~~-g~~~ 198 (241)
..+..+++++ +|..
T Consensus 378 ~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 378 EQIKAFLQEHPDFPF 392 (426)
T ss_pred HHHHHHHHhCCCCee
Confidence 4556666655 4543
No 147
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.83 E-value=1.1e-07 Score=85.78 Aligned_cols=130 Identities=22% Similarity=0.166 Sum_probs=90.8
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCce---EEEEeecCCCCc--CcCCCCCc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC---RVMGLTWGFLDA--SIFDLNPN 141 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~l~w~~~~~--~~~~~~fD 141 (241)
..+|++||++-|=||..|+.+|..|| +||.+|+|. .+|+.+++|+++|++.. .+...|.-+... .....+||
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 34699999999999999999999999 999999996 59999999999999853 344433322221 11234899
Q ss_pred EEEEcCCcCCC---------ccHHHHHHHHHHHhhcCCCeEEEEEe--eccCchhHHHHH---HHHcCCEEEEE
Q 026274 142 IILGADVFYDA---------SAFDDLFATITYLLQSSPGSVFITTY--HNRSGHHLIEFL---MVKWGLKCVKL 201 (241)
Q Consensus 142 lIl~~dvly~~---------~~~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~~~~~~~---~~~~g~~~~~i 201 (241)
+|+.-++-|-. .++..|+..+.++|+ |+|+++++. .........+.+ ....|.....+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~--pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA--PGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcC--CCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 99987777653 367889999999998 455544443 333333333333 23445555555
No 148
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.3e-09 Score=79.62 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=68.4
Q ss_pred hccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 64 ~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.....+.|+.++|||||+|.+++.++-.+. .|+|.|+++ ++|+..++|++.-.+++.+.+.+..+.... .+.||.
T Consensus 42 ~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNaeEfEvqidlLqcdildle~~--~g~fDt 117 (185)
T KOG3420|consen 42 NTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAEEFEVQIDLLQCDILDLELK--GGIFDT 117 (185)
T ss_pred hhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchHHhhhhhheeeeeccchhcc--CCeEee
Confidence 344668999999999999999988888777 799999995 799999999998888877777776654322 357999
Q ss_pred EEEcCCcCC
Q 026274 143 ILGADVFYD 151 (241)
Q Consensus 143 Il~~dvly~ 151 (241)
.+.+..+-.
T Consensus 118 aviNppFGT 126 (185)
T KOG3420|consen 118 AVINPPFGT 126 (185)
T ss_pred EEecCCCCc
Confidence 998877754
No 149
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=1.2e-07 Score=80.71 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred eccHHHHHHHHHh---ccCCCCCCeEEEecCCCCHHHHHHHHh-C-CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEE
Q 026274 52 WPCSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVM 124 (241)
Q Consensus 52 W~~s~~L~~~l~~---~~~~~~~~~VLElGcGtGl~sl~la~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~ 124 (241)
|+... +.+++.. +...+++..+||+|||+|.+|+.++.. + ..|+++|.++ .++..+.+|+..+++. +.++
T Consensus 128 pETEE-~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~--~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 128 PETEE-WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK--AAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred ccHHH-HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH--HHHHHHHHHHHHHhhcCceEEE
Confidence 55444 4455433 234456678999999999999998885 3 3799999996 5999999999988764 3344
Q ss_pred ----EeecCCCCcCcCCCCCcEEEEcCCcCCCc--------------------------cHHHHHHHHHHHhhcCCCeEE
Q 026274 125 ----GLTWGFLDASIFDLNPNIILGADVFYDAS--------------------------AFDDLFATITYLLQSSPGSVF 174 (241)
Q Consensus 125 ----~l~w~~~~~~~~~~~fDlIl~~dvly~~~--------------------------~~~~ll~~~~~lL~~~~~~~~ 174 (241)
..+|.+. .+...+++|+++++.++-... .+-.++.-..++|+ +|+.+
T Consensus 205 ~~~me~d~~~~-~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq--~gg~~ 281 (328)
T KOG2904|consen 205 HNIMESDASDE-HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ--PGGFE 281 (328)
T ss_pred ecccccccccc-cccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc--cCCeE
Confidence 3344433 234567999999987764322 34455666778887 57777
Q ss_pred EEEeeccCc
Q 026274 175 ITTYHNRSG 183 (241)
Q Consensus 175 ~~~~~~r~~ 183 (241)
.+....|..
T Consensus 282 ~le~~~~~~ 290 (328)
T KOG2904|consen 282 QLELVERKE 290 (328)
T ss_pred EEEeccccc
Confidence 777764433
No 150
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.82 E-value=4.4e-08 Score=79.56 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCC-CCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFD-LNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~-~~fDlI 143 (241)
.+.|.++|||-||+|.+|+.+.++|| +++++|.+. .++..+++|++.-+. ++.+...|-......... .+||+|
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence 47899999999999999999999998 899999995 699999999988774 444444443322112111 259999
Q ss_pred EEcCCcCCCccHHHHHHHHH----HHhhcCCCeEEEEEeeccC
Q 026274 144 LGADVFYDASAFDDLFATIT----YLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~----~lL~~~~~~~~~~~~~~r~ 182 (241)
+. |+-|+....+.....+. .+|+ +++.+++.++...
T Consensus 119 fl-DPPy~~~l~~~~~~~~~~~~~~~L~--~~~~iv~E~~~~~ 158 (187)
T COG0742 119 FL-DPPYAKGLLDKELALLLLEENGWLK--PGALIVVEHDKDV 158 (187)
T ss_pred Ee-CCCCccchhhHHHHHHHHHhcCCcC--CCcEEEEEeCCCc
Confidence 95 66666555533333333 4454 7888888876653
No 151
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.82 E-value=3.7e-08 Score=81.39 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=84.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+..-|||||||||+.|-.+...|+..+++|+|+ .||+.+.+ -+ +.-.+.-.|.+.. .+..++.||-+|+--.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSp--sML~~a~~-~e---~egdlil~DMG~G-lpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISP--SMLEQAVE-RE---LEGDLILCDMGEG-LPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCH--HHHHHHHH-hh---hhcCeeeeecCCC-CCCCCCccceEEEeeee
Confidence 556799999999999999999999999999995 69998876 11 1223455677754 35556789977643333
Q ss_pred ---------CCCc--cHHHHHHHHHHHhhcCCCeEEEEEeeccCchh--HHHHHHHHcCCEEEEEec
Q 026274 150 ---------YDAS--AFDDLFATITYLLQSSPGSVFITTYHNRSGHH--LIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 150 ---------y~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~--~~~~~~~~~g~~~~~i~~ 203 (241)
+|.+ -+..++.++..+|+ .++..++-+.+.+..+ .+..-..+.||.--.+.+
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~--rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd 187 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLK--RGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVD 187 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhc--cCceeEEEecccchHHHHHHHHHHHhhccCCceeee
Confidence 2221 24557888999998 5566666666655533 333334567876655544
No 152
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.81 E-value=2.2e-07 Score=81.34 Aligned_cols=88 Identities=8% Similarity=0.009 Sum_probs=65.2
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCc
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASI 135 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~ 135 (241)
+.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++++..++ .++++...|+.+..
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~--~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--- 98 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDP--RMVAELKKRFQNSPLASKLEVIEGDALKTE--- 98 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCH--HHHHHHHHHHHhcCCCCcEEEEECCHhhhc---
Confidence 344555544555778999999999999999999888999999995 69999999987665 35666666654432
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
-..||.|+++-++|-
T Consensus 99 -~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 99 -FPYFDVCVANVPYQI 113 (294)
T ss_pred -ccccCEEEecCCccc
Confidence 136898887544443
No 153
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.80 E-value=2.4e-07 Score=79.98 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=87.2
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEe
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGL 126 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l 126 (241)
.-.++.+.+..+ . ..+|.+|||+|||+|..++.+++. ...|+++|+++ .+++.+++|++.++. ++.+...
T Consensus 56 qd~~s~~~~~~l-~---~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~~l~~~~~n~~~~g~~~v~~~~~ 129 (264)
T TIGR00446 56 QEASSMIPPLAL-E---PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK--SRTKVLIANINRCGVLNVAVTNF 129 (264)
T ss_pred ECHHHHHHHHHh-C---CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHHcCCCcEEEecC
Confidence 345555444433 2 346789999999999999998875 24899999995 699999999999886 4555555
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCC---------------c-------cHHHHHHHHHHHhhcCCCeE-EEEEee--cc
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDA---------------S-------AFDDLFATITYLLQSSPGSV-FITTYH--NR 181 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~---------------~-------~~~~ll~~~~~lL~~~~~~~-~~~~~~--~r 181 (241)
|..... ....+||.|+...+.... . ....+++...++|+ +||. +|.++. ..
T Consensus 130 D~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk--pgG~lvYstcs~~~~ 205 (264)
T TIGR00446 130 DGRVFG--AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK--PGGVLVYSTCSLEPE 205 (264)
T ss_pred CHHHhh--hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCChH
Confidence 543321 123469999865433221 1 23458888888887 4444 444322 22
Q ss_pred CchhHHHHHHHHc-CCE
Q 026274 182 SGHHLIEFLMVKW-GLK 197 (241)
Q Consensus 182 ~~~~~~~~~~~~~-g~~ 197 (241)
.....+.++++++ ++.
T Consensus 206 Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 206 ENEAVVDYLLEKRPDVV 222 (264)
T ss_pred HHHHHHHHHHHhCCCcE
Confidence 2244556666654 454
No 154
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.80 E-value=3.7e-08 Score=84.67 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=65.0
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++++.. ..++.+...|+.+...
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~-~~~v~ii~~D~~~~~~---- 89 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIA-AGNVEIIEGDALKVDL---- 89 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhcc-CCCEEEEEeccccCCc----
Confidence 445555544555778999999999999999999988999999996 699999988754 2356666666654321
Q ss_pred CCCcEEEEcCCcCC
Q 026274 138 LNPNIILGADVFYD 151 (241)
Q Consensus 138 ~~fDlIl~~dvly~ 151 (241)
..||.|+++-+++.
T Consensus 90 ~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 PEFNKVVSNLPYQI 103 (258)
T ss_pred hhceEEEEcCCccc
Confidence 25899998877543
No 155
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=6e-08 Score=88.83 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFL 131 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~ 131 (241)
.++.+|..++..+.....++.+||+-||||++|+++|+.-.+|+++++++ ++++.|+.|+..|++ +++|....-.+.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~--~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISP--DAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecCh--hhcchhhhcchhcCccceeeeecchhhc
Confidence 57788999999888877889999999999999999999888999999995 799999999999998 577777644444
Q ss_pred CcCcCCC---CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHH-------HHcCCEEEEE
Q 026274 132 DASIFDL---NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLM-------VKWGLKCVKL 201 (241)
Q Consensus 132 ~~~~~~~---~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~-------~~~g~~~~~i 201 (241)
...+... +-+++...|.-- ......+++.+...-+ +.-++|++...+........++ .+-+|....+
T Consensus 444 ~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~--~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~ 520 (534)
T KOG2187|consen 444 FPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKN--PRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKA 520 (534)
T ss_pred cchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccC--ccceEEEEcCHHHhhhhHHHhhcCccccccccccceeee
Confidence 3333332 345555444433 4456677777777643 5666676665543222233332 2234555555
Q ss_pred --ecCCCCCCccc
Q 026274 202 --VDGFSFLPHYK 212 (241)
Q Consensus 202 --~~~~~~~p~~~ 212 (241)
.+.|.+.||.+
T Consensus 521 ~~VDlfP~T~h~E 533 (534)
T KOG2187|consen 521 VGVDLFPHTPHCE 533 (534)
T ss_pred eecccCCCCCcCC
Confidence 56677666653
No 156
>PRK00811 spermidine synthase; Provisional
Probab=98.77 E-value=6e-08 Score=84.50 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHc------CCceEEEEeecCCCCcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN------KLNCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n------~~~~~~~~l~w~~~~~~~~~~~fD 141 (241)
+.++||+||||+|..+..+++. +. +|+++|+++ ++++.++++.... ..++++...|....... .+.+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCccc
Confidence 4679999999999999988886 43 899999996 6999999877532 33455655554333222 345899
Q ss_pred EEEEc--CCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 142 IILGA--DVFYDAS--AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 142 lIl~~--dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+|++. |...-.. .-..+++.+++.|+ ++|++++-
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~--~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALK--EDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcC--CCcEEEEe
Confidence 99963 2221111 12677889999998 66776654
No 157
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=2.3e-07 Score=85.47 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=84.4
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+|.+|||+|||+|..++.++.. +.+|+++|+++ .+++.+++|++..++. +++...|+.... ....++||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~--~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR--EKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 346789999999999999988886 45999999995 6999999999988874 566666655432 1224579999
Q ss_pred EEcCCcCCC------c----------------cHHHHHHHHHHHhhcCCCeEEEEEee--ccCchhHHHHHHHH-cCCEE
Q 026274 144 LGADVFYDA------S----------------AFDDLFATITYLLQSSPGSVFITTYH--NRSGHHLIEFLMVK-WGLKC 198 (241)
Q Consensus 144 l~~dvly~~------~----------------~~~~ll~~~~~lL~~~~~~~~~~~~~--~r~~~~~~~~~~~~-~g~~~ 198 (241)
++..+.... + ....++..+.++|++ +|.++|..+. .......+..++++ -+|..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK-GGILLYSTCTVTKEENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCCChhhCHHHHHHHHHhCCCcEE
Confidence 864333211 1 235678888899883 2334443332 22233444545543 46664
Q ss_pred EE
Q 026274 199 VK 200 (241)
Q Consensus 199 ~~ 200 (241)
..
T Consensus 391 ~~ 392 (431)
T PRK14903 391 ID 392 (431)
T ss_pred ec
Confidence 43
No 158
>PRK04457 spermidine synthase; Provisional
Probab=98.75 E-value=6.2e-08 Score=83.52 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
++++|||||||+|.++..+++. +.+|+++|+++ ++++.++++...++ .++++...|..+.... ...+||+|+.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp--~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP--QVIAVARNHFELPENGERFEVIEADGAEYIAV-HRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCEEEE
Confidence 4578999999999999988876 35899999995 79999999876553 4566666554433221 2358999986
Q ss_pred cCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 ADVFYDAS------AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|. |+.. ....+++.+.++|+ ++|++++..
T Consensus 143 -D~-~~~~~~~~~l~t~efl~~~~~~L~--pgGvlvin~ 177 (262)
T PRK04457 143 -DG-FDGEGIIDALCTQPFFDDCRNALS--SDGIFVVNL 177 (262)
T ss_pred -eC-CCCCCCccccCcHHHHHHHHHhcC--CCcEEEEEc
Confidence 33 2211 23789999999998 677777653
No 159
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.74 E-value=7.9e-08 Score=87.04 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
+.+|||++||+|..|+.+++. ++ +|++.|+++ ++++.+++|++.|++. ..+...|....... ..+||+|+. |
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~~fD~V~l-D 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELNGLENEKVFNKDANALLHE--ERKFDVVDI-D 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cCCCCEEEE-C
Confidence 468999999999999999875 43 899999995 6999999999999875 34555554332111 347999998 5
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+. ....++++.....++ ++++++++
T Consensus 133 P~---Gs~~~~l~~al~~~~--~~gilyvS 157 (382)
T PRK04338 133 PF---GSPAPFLDSAIRSVK--RGGLLCVT 157 (382)
T ss_pred CC---CCcHHHHHHHHHHhc--CCCEEEEE
Confidence 52 455677777555555 57777766
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.72 E-value=1.2e-07 Score=79.27 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceE--EEE-e
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMG-L 126 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~-l 126 (241)
+..-.+..+|.+ ....++|||||.++|.-++.+|.. . .+++.+|+++ ++.+.+++|++.-+..-+ ... +
T Consensus 45 ~e~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~--e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDE--ERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH--HHHHHHHHHHHHcCCcceEEEEecC
Confidence 444444444443 346789999999999999999985 2 3899999996 799999999999987544 333 3
Q ss_pred ecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 127 TWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 127 ~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++.+.......++||+|+.- ......+..++.+.++|+ +||++++.
T Consensus 120 dal~~l~~~~~~~fDliFID---adK~~yp~~le~~~~lLr--~GGliv~D 165 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFID---ADKADYPEYLERALPLLR--PGGLIVAD 165 (219)
T ss_pred cHHHHHHhccCCCccEEEEe---CChhhCHHHHHHHHHHhC--CCcEEEEe
Confidence 44443333345799999853 235677888999999998 78888876
No 161
>PLN02476 O-methyltransferase
Probab=98.71 E-value=1e-07 Score=82.54 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCc----CCCC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASI----FDLN 139 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~----~~~~ 139 (241)
.+.++|||+|+|+|..++.+|+. +.+|+.+|.++ +.++.+++|++..|.. +++...+..+..... ...+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45689999999999999999984 34799999995 7999999999999885 555544443322111 1357
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
||+|+.-- ........++.+.++|+ +||++++.
T Consensus 195 FD~VFIDa---~K~~Y~~y~e~~l~lL~--~GGvIV~D 227 (278)
T PLN02476 195 YDFAFVDA---DKRMYQDYFELLLQLVR--VGGVIVMD 227 (278)
T ss_pred CCEEEECC---CHHHHHHHHHHHHHhcC--CCcEEEEe
Confidence 99998532 24567888888889987 67877766
No 162
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.71 E-value=1.9e-07 Score=77.74 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=76.5
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh-CC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWG 129 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~ 129 (241)
++-.+...+.+.....+|.+|||||||||..+-.+|.+ |. +|+++|.++ ++.+.+++|+...+. ++.+...|-.
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhccCceeEEEcchh
Confidence 44444444444455678899999999999999999986 44 799999995 699999999998887 5677666543
Q ss_pred CCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 130 FLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 130 ~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.... ...+||.|+..-.+.. +-..+.+.|+ +||.++++...
T Consensus 134 ~g~~--~~apfD~I~v~~a~~~------ip~~l~~qL~--~gGrLV~pi~~ 174 (209)
T PF01135_consen 134 EGWP--EEAPFDRIIVTAAVPE------IPEALLEQLK--PGGRLVAPIGQ 174 (209)
T ss_dssp GTTG--GG-SEEEEEESSBBSS--------HHHHHTEE--EEEEEEEEESS
T ss_pred hccc--cCCCcCEEEEeeccch------HHHHHHHhcC--CCcEEEEEEcc
Confidence 3221 1247999998765543 2234556677 67888877654
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.66 E-value=7.1e-08 Score=80.13 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=83.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWG 129 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~ 129 (241)
+..-+++|.......+.++|||||||+|.-++.+|+. +++|+.+|.++ +..+.++++++..+. ++++...+..
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 3344444443333456689999999999999999985 56999999995 799999999998886 4666665554
Q ss_pred CCCcCc----CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 130 FLDASI----FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 130 ~~~~~~----~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+....+ ..++||+|+.-. ........++.+.++|+ +||++++.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~--~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLR--PGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEE--EEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcc---cccchhhHHHHHhhhcc--CCeEEEEc
Confidence 332211 124799999642 35677788888889998 78888887
No 164
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.65 E-value=2.6e-07 Score=83.41 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=72.9
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CC-EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
+.+|||+.||+|..|+.+++. |+ +|++.|+++ ++++.+++|++.|+.. +.+...|....... ...+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-~~~~fDvIdl- 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYNSVENIEVPNEDAANVLRY-RNRKFHVIDI- 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-hCCCCCEEEe-
Confidence 358999999999999999997 55 899999995 7999999999999874 56665555433221 1247999987
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+ |. ...++++.+.+.++ .++++++.
T Consensus 121 DP-fG--s~~~fld~al~~~~--~~glL~vT 146 (374)
T TIGR00308 121 DP-FG--TPAPFVDSAIQASA--ERGLLLVT 146 (374)
T ss_pred CC-CC--CcHHHHHHHHHhcc--cCCEEEEE
Confidence 66 53 44578887777776 44554444
No 165
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.65 E-value=9.4e-07 Score=75.68 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=60.6
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~ 137 (241)
+.+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.++.+... ..++.+...|+.+...+
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~--~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP--RLAEILRKLLSL-YERLEVIEGDALKVDLP--- 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH--HHHHHHHHHhCc-CCcEEEEECchhcCChh---
Confidence 344444444445678999999999999999999988999999996 699998887753 33556666565443222
Q ss_pred CCCc---EEEEcCCcCC
Q 026274 138 LNPN---IILGADVFYD 151 (241)
Q Consensus 138 ~~fD---lIl~~dvly~ 151 (241)
.+| +|+++-+ |+
T Consensus 91 -~~d~~~~vvsNlP-y~ 105 (253)
T TIGR00755 91 -DFPKQLKVVSNLP-YN 105 (253)
T ss_pred -HcCCcceEEEcCC-hh
Confidence 355 7776544 44
No 166
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.64 E-value=6e-07 Score=76.53 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=84.5
Q ss_pred HHhccCCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCC-CcCc
Q 026274 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFL-DASI 135 (241)
Q Consensus 62 l~~~~~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~-~~~~ 135 (241)
|....+..+|.+|||-|.|+|.++.++++. | .+|.-.|..+ +.++.+++|++.+++ ++++..-|..+. ....
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~--~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE--DRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH--HHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 344456678999999999999999999985 4 3899999995 799999999999987 467777776432 1112
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHh-hcCCCeEEEEEeeccCchhHHH--HHHHHcCCEEEEEe
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLL-QSSPGSVFITTYHNRSGHHLIE--FLMVKWGLKCVKLV 202 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL-~~~~~~~~~~~~~~r~~~~~~~--~~~~~~g~~~~~i~ 202 (241)
.+..+|.|+. +.+.+-..+..+.+.| + +||. +++|.+ .-.+... ..+++.||....+.
T Consensus 110 ~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~--~gG~-i~~fsP-~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPWEAIPHAKRALKK--PGGR-ICCFSP-CIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp -TTSEEEEEE-----ESSSGGGGHHHHHHHE-E--EEEE-EEEEES-SHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccCcccEEEE-----eCCCHHHHHHHHHHHHhc--CCce-EEEECC-CHHHHHHHHHHHHHCCCeeeEEE
Confidence 2357999885 6777888888899999 5 3332 222221 1122222 23567899776653
No 167
>PRK03612 spermidine synthase; Provisional
Probab=98.63 E-value=2.7e-07 Score=86.90 Aligned_cols=126 Identities=16% Similarity=0.068 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH---c-----CCceEEEEeecCCCCcCcCCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---N-----KLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~---n-----~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
+.++||+||||+|..+..+++.+ .+|+++|+++ ++++.+++|... | +.++++...|..+.... .+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-LAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-CCCC
Confidence 56799999999999998888874 4899999996 799999985322 1 23455555443332211 2358
Q ss_pred CcEEEEcCCcCCCc-----cHHHHHHHHHHHhhcCCCeEEEEEeeccC-ch---hHHHHHHHHcCCEEEE
Q 026274 140 PNIILGADVFYDAS-----AFDDLFATITYLLQSSPGSVFITTYHNRS-GH---HLIEFLMVKWGLKCVK 200 (241)
Q Consensus 140 fDlIl~~dvly~~~-----~~~~ll~~~~~lL~~~~~~~~~~~~~~r~-~~---~~~~~~~~~~g~~~~~ 200 (241)
||+|++.-.-...+ .-+.+++.++++|+ ++|++++...... .. ......+++.||.+..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~--pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA--PDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcC--CCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence 99999852211111 12457889999998 6777776432211 11 1223346788894433
No 168
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.62 E-value=9.5e-08 Score=83.06 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc---eEEEEeecCCCCcCc-CCCCCcEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASI-FDLNPNII 143 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~---~~~~~l~w~~~~~~~-~~~~fDlI 143 (241)
.+|++||++-|=||-+|++++..|| +|+.+|.|. .+++.+++|+.+|+++ +++...|..+..... ...+||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~--~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK--RALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-H--HHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999998 799999995 6999999999999964 456655544322111 23589999
Q ss_pred EEcCCcCCC------ccHHHHHHHHHHHhhcCCCeEEEEE-eeccCchhHHHH
Q 026274 144 LGADVFYDA------SAFDDLFATITYLLQSSPGSVFITT-YHNRSGHHLIEF 189 (241)
Q Consensus 144 l~~dvly~~------~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~~~~~~ 189 (241)
|+-++-|-. .++..|+..+.++|+ +||.++++ +...-..+.+..
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~--~gG~l~~~scs~~i~~~~l~~ 250 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLK--PGGLLLTCSCSHHISPDFLLE 250 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEE--EEEEEEEEE--TTS-HHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEcCCcccCHHHHHH
Confidence 988777653 256778888888887 56655544 333333343333
No 169
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.61 E-value=7.9e-07 Score=74.83 Aligned_cols=129 Identities=8% Similarity=-0.065 Sum_probs=85.5
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHH-----------
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC----------- 114 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~----------- 114 (241)
.+|+..=...-.|.+|+..... .++.+||..|||.|.-.+.||.+|++|+++|+|+ .+++.+.+..
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~ 96 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGND 96 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccc
Confidence 4444333445566677655332 2567999999999999999999999999999996 5777654411
Q ss_pred --HHcCCceEEEEeecCCCCcC-cCCCCCcEEEEcCCcC--CCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 115 --EMNKLNCRVMGLTWGFLDAS-IFDLNPNIILGADVFY--DASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 115 --~~n~~~~~~~~l~w~~~~~~-~~~~~fDlIl~~dvly--~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
...+..+++...|+.+.... ....+||+|+=.-++. .++.-...++.+.++|+++ +..+++.+
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg-g~llll~~ 164 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN-TQILLLVM 164 (226)
T ss_pred cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC-cEEEEEEE
Confidence 01234667777776654321 1124799987554443 4567788889999999853 33444443
No 170
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=3.2e-07 Score=76.85 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=77.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCC-----c-------------------
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKL-----N------------------- 120 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~-----~------------------- 120 (241)
..+.++.+||+||-+|.+++.+|+. |+ .|+++||++ -+++.|+++++.-.- .
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~--~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP--VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccH--HHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 4567889999999999999999995 66 799999996 488999988764210 0
Q ss_pred ------------eEEE----EeecCCCCcCcCCCCCcEEEEcCCcC------CCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 121 ------------CRVM----GLTWGFLDASIFDLNPNIILGADVFY------DASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 121 ------------~~~~----~l~w~~~~~~~~~~~fDlIl~~dvly------~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.++ .++-.++. ......||+|+|--+-- +.+-+..++..+.++|. |||++++..
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~--pgGiLvvEP 209 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH--PGGILVVEP 209 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC--cCcEEEEcC
Confidence 0000 01111111 11234799999876653 35678999999999998 788888875
Q ss_pred eccCc
Q 026274 179 HNRSG 183 (241)
Q Consensus 179 ~~r~~ 183 (241)
.....
T Consensus 210 QpWks 214 (288)
T KOG2899|consen 210 QPWKS 214 (288)
T ss_pred CchHH
Confidence 55443
No 171
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.58 E-value=9.1e-07 Score=74.23 Aligned_cols=119 Identities=14% Similarity=-0.000 Sum_probs=77.7
Q ss_pred cceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHH-HHHH-Hc-------
Q 026274 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR-RVCE-MN------- 117 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~-~n~~-~n------- 117 (241)
+|+..=..+..|.+|+... ....+.+||..|||.|.-.+.||..|.+|+++|+++ .+++.+. +|.. .+
T Consensus 15 ~~w~~~~~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~--~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP--TAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp -TT--TTSTHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H--HHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCCCCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH--HHHHHHHHHhccCCCcccccce
Confidence 4443334477788888762 234567999999999999999999999999999996 5777663 2221 11
Q ss_pred ----CCceEEEEeecCCCCcCcCCCCCcEEEEcCCc--CCCccHHHHHHHHHHHhhcC
Q 026274 118 ----KLNCRVMGLTWGFLDASIFDLNPNIILGADVF--YDASAFDDLFATITYLLQSS 169 (241)
Q Consensus 118 ----~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl--y~~~~~~~ll~~~~~lL~~~ 169 (241)
..++++...|.-+.... ..++||+|+=.-++ -.++.-+.-.+.+.++|+++
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~-~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPE-DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGS-CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred eeecCCceEEEEcccccCChh-hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 01345555555443222 11379999855544 34678888999999999843
No 172
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.57 E-value=2.3e-06 Score=72.00 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=98.7
Q ss_pred CCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceE
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~ 122 (241)
-+.+..+++.++.=+.|+.+.. ...|++||=+|=+ =+.|+++|.. ..+|+..|+++ .+++.+++.++..+++++
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~g-dL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDe--Rll~fI~~~a~~~gl~i~ 95 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERG-DLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDE--RLLDFINRVAEEEGLPIE 95 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT--STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-H--HHHHHHHHHHHHHT--EE
T ss_pred cccccccHHHHHHHHHHHHhcC-cccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCH--HHHHHHHHHHHHcCCceE
Confidence 3677888899999889988754 4689999999833 3777777765 45999999996 599999999999999999
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCch--h--HHHHHHHHcCCEE
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGH--H--LIEFLMVKWGLKC 198 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~--~--~~~~~~~~~g~~~ 198 (241)
+...|..+...+...++||+++ .|+.|..+.+.-++..--..|+ ++|+..++++..+... . .++.+.-+.||-+
T Consensus 96 ~~~~DlR~~LP~~~~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk-~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 96 AVHYDLRDPLPEELRGKFDVFF-TDPPYTPEGLKLFLSRGIEALK-GEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp EE---TTS---TTTSS-BSEEE-E---SSHHHHHHHHHHHHHTB--STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred EEEecccccCCHHHhcCCCEEE-eCCCCCHHHHHHHHHHHHHHhC-CCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence 9999998877666678999998 6889999999999988888887 4566778887776532 1 2344455899999
Q ss_pred EEEec
Q 026274 199 VKLVD 203 (241)
Q Consensus 199 ~~i~~ 203 (241)
+.+..
T Consensus 174 ~dii~ 178 (243)
T PF01861_consen 174 TDIIP 178 (243)
T ss_dssp EEEEE
T ss_pred HHHHh
Confidence 98843
No 173
>PRK01581 speE spermidine synthase; Validated
Probab=98.55 E-value=9.2e-07 Score=79.00 Aligned_cols=125 Identities=20% Similarity=0.154 Sum_probs=79.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHH---H-----cCCceEEEEeecCCCCcCcCCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE---M-----NKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~---~-----n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
..++||+||||+|.....+.+.. .+|+++|+++ +|++.++..-. . .+.++++...|..+.... ...+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp--eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG--SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH--HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCCC
Confidence 45799999999998888777764 4899999995 79999886211 1 233555555554433222 2458
Q ss_pred CcEEEEcCCcCCCc-------cHHHHHHHHHHHhhcCCCeEEEEEeeccCch-hH---HHHHHHHcCCEEEEE
Q 026274 140 PNIILGADVFYDAS-------AFDDLFATITYLLQSSPGSVFITTYHNRSGH-HL---IEFLMVKWGLKCVKL 201 (241)
Q Consensus 140 fDlIl~~dvly~~~-------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~-~~---~~~~~~~~g~~~~~i 201 (241)
||+|+.. + .++. .-..+++.+++.|+ |||++++-....... .. +...+++.++.+...
T Consensus 227 YDVIIvD-l-~DP~~~~~~~LyT~EFy~~~~~~Lk--PgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 227 YDVIIID-F-PDPATELLSTLYTSELFARIATFLT--EDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred ccEEEEc-C-CCccccchhhhhHHHHHHHHHHhcC--CCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 9999964 2 1211 12568899999998 677766543221111 11 223357778877655
No 174
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.55 E-value=7.9e-07 Score=76.95 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=68.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcC-----CceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~-----~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||+||||+|.++..+++.. .+|+++|+++ ++++.++++....+ .++++...|..+... ....+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~-~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA-DTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhHhhcccccCCceEEEECchHHHHH-hCCCCccE
Confidence 45699999999998888877764 3899999995 69999998764322 234444433222111 12458999
Q ss_pred EEEcCCc--CCCcc--HHHHHHHHHHHhhcCCCeEEEEE
Q 026274 143 ILGADVF--YDASA--FDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 143 Il~~dvl--y~~~~--~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+..-.- ..... ...+++.+.++|+ ++|++++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~--pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALN--EDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhC--CCcEEEEc
Confidence 9974331 11111 4677889999998 66766654
No 175
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.50 E-value=1.5e-06 Score=73.69 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=72.0
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
......++|+|||+|+|..+..+++. +.+++..|.. ++++.+++ ..++++...|+.+ +. +. +|++
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~v~~~~~~-----~~rv~~~~gd~f~---~~-P~-~D~~ 162 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP---EVIEQAKE-----ADRVEFVPGDFFD---PL-PV-ADVY 162 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H---HHHCCHHH-----TTTEEEEES-TTT---CC-SS-ESEE
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccH---hhhhcccc-----ccccccccccHHh---hh-cc-ccce
Confidence 33345578999999999999999987 4489999994 68887777 5567777777652 32 23 9999
Q ss_pred EEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYD--ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.+.++++ .+....+++.+.+.|+|++.+.+++.
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99999976 46778899999999985422544433
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.49 E-value=2.8e-06 Score=75.05 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=99.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEe-ecCCCCc
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGL-TWGFLDA 133 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l-~w~~~~~ 133 (241)
-.||+.+.......+|..|||==||||-+-+.+...|++++|+|++. .|+.-++.|.+.-++. ..+... |..+.
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~--~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-- 258 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDE--RMVRGAKINLEYYGIEDYPVLKVLDATNL-- 258 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHH--HHHhhhhhhhhhhCcCceeEEEecccccC--
Confidence 46777777666777899999999999999999999999999999996 6999999999988753 222222 33332
Q ss_pred CcCCCCCcEEEEcCCcCCCc----------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEec
Q 026274 134 SIFDLNPNIILGADVFYDAS----------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 203 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~----------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~ 203 (241)
++.+.++|.|+ .|+-|-.. ....+++++++.|+ +||.+.+... +. ........||++.....
T Consensus 259 pl~~~~vdaIa-tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk--~gG~~vf~~p-~~----~~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 259 PLRDNSVDAIA-TDPPYGRSTKIKGEGLDELYEEALESASEVLK--PGGRIVFAAP-RD----PRHELEELGFKVLGRFT 330 (347)
T ss_pred CCCCCccceEE-ecCCCCcccccccccHHHHHHHHHHHHHHHhh--cCcEEEEecC-Cc----chhhHhhcCceEEEEEE
Confidence 34444699987 46666542 37888999999998 4565555544 11 22335678999988755
Q ss_pred CC
Q 026274 204 GF 205 (241)
Q Consensus 204 ~~ 205 (241)
.+
T Consensus 331 ~~ 332 (347)
T COG1041 331 MR 332 (347)
T ss_pred Ee
Confidence 44
No 177
>PLN02366 spermidine synthase
Probab=98.48 E-value=1.6e-06 Score=76.40 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||+||||.|.+...+++.. .+|+++|+++ ++++.+++.... ++.++++...|.........+++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46899999999999988888873 3899999995 699999887643 23355555555332222222457999
Q ss_pred EEEcCCcCC--Cc---cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 143 ILGADVFYD--AS---AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 143 Il~~dvly~--~~---~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
|+. |..-. +. .-..+++.+++.|+ ++|+++.
T Consensus 169 Ii~-D~~dp~~~~~~L~t~ef~~~~~~~L~--pgGvlv~ 204 (308)
T PLN02366 169 IIV-DSSDPVGPAQELFEKPFFESVARALR--PGGVVCT 204 (308)
T ss_pred EEE-cCCCCCCchhhhhHHHHHHHHHHhcC--CCcEEEE
Confidence 996 33211 11 13467889999998 6777654
No 178
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.47 E-value=6.6e-07 Score=73.99 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=62.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHH--hCCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+|..|+|+.||.|..++.+|+ .+..|++.|++| .+++.+++|++.|++. +.+...|..+... ...+|-|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEE
Confidence 34678999999999999999999 566899999995 7999999999999986 4556666554432 5689999
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhh
Q 026274 144 LGADVFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~ 167 (241)
++.- +.....++..+..+++
T Consensus 174 im~l----p~~~~~fl~~~~~~~~ 193 (200)
T PF02475_consen 174 IMNL----PESSLEFLDAALSLLK 193 (200)
T ss_dssp EE------TSSGGGGHHHHHHHEE
T ss_pred EECC----hHHHHHHHHHHHHHhc
Confidence 9864 3334456667777776
No 179
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.46 E-value=3.1e-06 Score=71.94 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+..++||||||.|-+...++..-.+|.+|+.|. .|...++ ..|.++ +-..+|.+. +.+||+|.|..++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~--~Mr~rL~----~kg~~v-l~~~~w~~~-----~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASP--PMRWRLS----KKGFTV-LDIDDWQQT-----DFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCH--HHHHHHH----hCCCeE-Eehhhhhcc-----CCceEEEeehhhh
Confidence 567899999999999999999888999999995 3544333 345443 223456532 3579999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
=....+..|++.+++.|+| +|.++++
T Consensus 162 DRc~~P~~LL~~i~~~l~p--~G~lilA 187 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKP--NGRLILA 187 (265)
T ss_pred hccCCHHHHHHHHHHHhCC--CCEEEEE
Confidence 8888999999999999985 5554443
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.46 E-value=1.6e-06 Score=80.04 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC-----C-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG-----S-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPN 141 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g-----~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fD 141 (241)
+++.|+|+|||+|.++.++++.| + +|.+++.++ .+...+++.+..|+. .+++...+..+... +.++|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~--~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l---pekvD 260 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP--NAVVTLQKRVNANGWGDKVTVIHGDMREVEL---PEKVD 260 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST--HHHHHHHHHHHHTTTTTTEEEEES-TTTSCH---SS-EE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH--hHHHHHHHHHHhcCCCCeEEEEeCcccCCCC---CCcee
Confidence 57889999999999999988876 3 899999997 366666666677765 57778777766543 34899
Q ss_pred EEEEcCCc---CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 142 IILGADVF---YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 142 lIl~~dvl---y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
+||+ +.+ -.-+.....+....+.|++ +|+++
T Consensus 261 IIVS-ElLGsfg~nEl~pE~Lda~~rfLkp--~Gi~I 294 (448)
T PF05185_consen 261 IIVS-ELLGSFGDNELSPECLDAADRFLKP--DGIMI 294 (448)
T ss_dssp EEEE----BTTBTTTSHHHHHHHGGGGEEE--EEEEE
T ss_pred EEEE-eccCCccccccCHHHHHHHHhhcCC--CCEEe
Confidence 9983 333 1223555678888899984 45444
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.46 E-value=8.8e-07 Score=75.59 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=75.1
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcC-----C
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIF-----D 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~-----~ 137 (241)
..+.++|||||+++|.-++.+|+. +.+|+.+|.++ +..+.++.+++..+.. +++...+..+....+. .
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--ENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 345679999999999999999874 45899999995 6889999999988863 5555544433222211 2
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++||+|+.- .+.......++.+.++|+ +||++++.
T Consensus 155 ~~fD~iFiD---adK~~Y~~y~~~~l~ll~--~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVD---ADKDNYINYHKRLIDLVK--VGGVIGYD 189 (247)
T ss_pred CcccEEEec---CCHHHhHHHHHHHHHhcC--CCeEEEEc
Confidence 589999853 224456677777788987 78887766
No 182
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=4.8e-06 Score=69.44 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=82.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCC-CcEEEEc
Q 026274 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLN-PNIILGA 146 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~-fDlIl~~ 146 (241)
+++++|||+|.|++|+.+|-.. .+|+..|-... =+..++.-...-+++ +++.....++.... .+ ||+|.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~~~RaE~~~~~---~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIVHGRAEEFGQE---KKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEehhhHhhcccc---cccCcEEEee
Confidence 6899999999999999999653 37999999863 444555554444544 66666555543221 13 9999873
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
-...+..+.+.+..+++.+++.+++.....+.-....+..+..+|+.+..+
T Consensus 143 ----Ava~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 143 ----AVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ----hccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 456888999999999985444444444444433444555667888887776
No 183
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.44 E-value=2e-06 Score=70.00 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=83.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC--E---------EEEEcCCCcHHHHHHHHHHHHHcCCc--eEE
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--N---------VTLTDDSNRIEVLKNMRRVCEMNKLN--CRV 123 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~--~---------V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~ 123 (241)
.+|.-|.......++..|||--||+|.+-+.++..+. . +++.|+++ ++++.+++|++..+.. +.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~--~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP--KAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH--HHHHHHHHHHHHTT-CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH--HHHHHHHHHHHhcccCCceEE
Confidence 3444444444445678999999999999999888754 3 67999995 7999999999988774 455
Q ss_pred EEeecCCCCcCcCCCCCcEEEEcCCcCCC--------ccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC
Q 026274 124 MGLTWGFLDASIFDLNPNIILGADVFYDA--------SAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~dvly~~--------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 195 (241)
...|..+. +..++++|+|+++.++-.. ..+..+++.+.++++ +..+++++ ..+. +.......+
T Consensus 93 ~~~D~~~l--~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~--~~~v~l~~-~~~~----~~~~~~~~~ 163 (179)
T PF01170_consen 93 IQWDAREL--PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK--PRAVFLTT-SNRE----LEKALGLKG 163 (179)
T ss_dssp EE--GGGG--GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST--TCEEEEEE-SCCC----HHHHHTSTT
T ss_pred Eecchhhc--ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC--CCEEEEEE-CCHH----HHHHhcchh
Confidence 55555443 3345689999988777553 234455666777776 45555554 3222 344444557
Q ss_pred CEEEEE
Q 026274 196 LKCVKL 201 (241)
Q Consensus 196 ~~~~~i 201 (241)
+...+.
T Consensus 164 ~~~~~~ 169 (179)
T PF01170_consen 164 WRKRKL 169 (179)
T ss_dssp SEEEEE
T ss_pred hceEEE
Confidence 766655
No 184
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=9.4e-07 Score=74.05 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=75.4
Q ss_pred eEEEecCCCCHHHHHHHHhC----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC--CcCcCCCCCcEEEEc
Q 026274 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASIFDLNPNIILGA 146 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~--~~~~~~~~fDlIl~~ 146 (241)
+|||+|||.|-...-+.+-. -+|.+.|.++ .+++.+++|...+...+..-..|.... ..+...+++|+|.+-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp--~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP--RAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCCh--HHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 69999999997777766643 3799999996 599999988766554443322332222 234445689998776
Q ss_pred CCcC--CCccHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 147 DVFY--DASAFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 147 dvly--~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
=|+- +++.....++.+.++|| |||.+++....++.
T Consensus 152 FvLSAi~pek~~~a~~nl~~llK--PGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLK--PGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhC--CCcEEEEeecccch
Confidence 5553 46788999999999998 67777766444433
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.27 E-value=2.5e-06 Score=68.22 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=64.8
Q ss_pred eEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCC-CcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLN-PNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~-fDlIl~~dvl 149 (241)
.|+|+.||.|--++.+|+.+.+|+++|+++ ..++.++.|++.-|+ ++.+...||.+......... +|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~--~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDP--ERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-H--HHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 699999999999999999999999999995 799999999999986 57888888887543322222 8999988754
Q ss_pred C----------CC------ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 150 Y----------DA------SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y----------~~------~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
= .. -+...+++...++ .+..+++++
T Consensus 80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LP 120 (163)
T PF09445_consen 80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLP 120 (163)
T ss_dssp SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEE
T ss_pred CCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeC
Confidence 2 22 1355555555555 355555554
No 186
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.27 E-value=6.7e-06 Score=67.87 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=68.4
Q ss_pred eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-e-EEEEeecCCCCcCc------CCCCCcE
Q 026274 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-C-RVMGLTWGFLDASI------FDLNPNI 142 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~-~~~~l~w~~~~~~~------~~~~fDl 142 (241)
+|||||||||.=+.++|+.-. ...-+|.++ ..+..++..+...+.. + ....+|......+. ...+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~--~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDD--NLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh--HHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 699999999999999998743 778899996 4667777766655432 1 12344444332222 2458999
Q ss_pred EEEcCCcCCC--ccHHHHHHHHHHHhhc
Q 026274 143 ILGADVFYDA--SAFDDLFATITYLLQS 168 (241)
Q Consensus 143 Il~~dvly~~--~~~~~ll~~~~~lL~~ 168 (241)
|++..+++-. ...+.|++...++|++
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~ 133 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKP 133 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCC
Confidence 9999999875 5788999999999984
No 187
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=2.4e-05 Score=69.54 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=81.8
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceE--EEEeecCCCCcCcCCCCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~--~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.|.+|||+=||.|-+++.+|+.|+ +|+++|+|| .+++.+++|+++|+.... ....|-.+..... ..+|-|++.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~ 263 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRIIMG 263 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEEeC
Confidence 588999999999999999999998 499999995 799999999999998654 4444444332221 579999986
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe-eccC----chhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTY-HNRS----GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~-~~r~----~~~~~~~~~~~~g~~~~~i 201 (241)
- +.....++.....+++. ++.+-+-.. +... ....+...+.+.|.++...
T Consensus 264 ~----p~~a~~fl~~A~~~~k~-~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 264 L----PKSAHEFLPLALELLKD-GGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred C----CCcchhhHHHHHHHhhc-CcEEEEEeccchhhcccchHHHHHHHHhhccCcceEE
Confidence 3 33445566666667763 232222221 1111 1233444566677655544
No 188
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.17 E-value=3.1e-06 Score=69.87 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCCeEEEecCCCC--H--HHHHHHHh-----C--CEEEEEcCCCcHHHHHHHHHHH----HHcC----------------
Q 026274 70 SGANVVELGAGTS--L--PGLVAAKV-----G--SNVTLTDDSNRIEVLKNMRRVC----EMNK---------------- 118 (241)
Q Consensus 70 ~~~~VLElGcGtG--l--~sl~la~~-----g--~~V~~tD~~~~~~~l~~~~~n~----~~n~---------------- 118 (241)
+..+|+-.||+|| . +++.+... + .+|++||+|+ .+|+.|++-+ ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~--~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP--SALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H--HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH--HHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 4468999999999 3 34444441 2 2899999995 6898887521 0001
Q ss_pred ---------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 119 ---------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYD--ASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 119 ---------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
..++|...+..+. ......||+|+|-+|+.| .+....+++.+.+.|+ |||.+++++.
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~--pgG~L~lG~s 176 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK--PGGYLFLGHS 176 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE--EEEEEEE-TT
T ss_pred ceeEChHHcCceEEEecccCCC--CcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC--CCCEEEEecC
Confidence 1367777766651 223458999999999954 5677899999999998 7899998854
No 189
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.16 E-value=7.2e-06 Score=68.56 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=90.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+|.+|||-..|.|..++.+.+.|| +|+-++.+++ +|+.+.-|-=..++ .+++...|.-+.-....+.+||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 34789999999999999999999999 9999999974 88877765322222 344444444333345556789999
Q ss_pred EEcCCcCCCc---cHHHHHHHHHHHhhcCCCeEEEEEeec-----cCchhHHHHHHHHcCCEEEEE
Q 026274 144 LGADVFYDAS---AFDDLFATITYLLQSSPGSVFITTYHN-----RSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 144 l~~dvly~~~---~~~~ll~~~~~lL~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~g~~~~~i 201 (241)
+--++-|... .-+.+.+.+.++|+++++..-|++.+. +....-+...+.+.||..+..
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 9655555432 356788999999997655555665332 222333344568899996554
No 190
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.15 E-value=1.8e-05 Score=70.43 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=79.6
Q ss_pred EeccHHHHHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-c------CC---
Q 026274 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-N------KL--- 119 (241)
Q Consensus 51 ~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-n------~~--- 119 (241)
-|=-+.++..|+.......++.+|||||||-| =+.-.....-..++++|++. +.++.+++.... + ..
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERYKQLKKRNNSKQYRFD 120 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhcccccccccccc
Confidence 48889999998875544447889999999966 34444444344899999995 688888876621 1 11
Q ss_pred -ceEEEEeecCCCC--cCcCC--CCCcEEEEcCCcCCC----ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 120 -NCRVMGLTWGFLD--ASIFD--LNPNIILGADVFYDA----SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 120 -~~~~~~l~w~~~~--~~~~~--~~fDlIl~~dvly~~----~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
...+...|-.... ....+ .+||+|=+--.++|. +....+++.+..+|+ |||.|+.+...
T Consensus 121 f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk--~GG~FIgT~~d 188 (331)
T PF03291_consen 121 FIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK--PGGYFIGTTPD 188 (331)
T ss_dssp CEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE--EEEEEEEEEE-
T ss_pred chhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCEEEEEecC
Confidence 2223332211110 11122 489999988888773 567789999999998 78888877554
No 191
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=2.3e-05 Score=64.62 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=77.5
Q ss_pred eEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcC-CCCCcEEEE--c
Q 026274 73 NVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIF-DLNPNIILG--A 146 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~-~~~fDlIl~--~ 146 (241)
.+||||||.|-..+.+|+. ...++|+|+.. ..+..+.+.+...++ ++.+...+........+ ++++|-|.. .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~--~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRK--KRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-H--HHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecch--HHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 7999999999888888887 44899999995 577777666666565 67777766655333233 357777654 3
Q ss_pred CCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHH--cCCEEEE
Q 026274 147 DVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVK--WGLKCVK 200 (241)
Q Consensus 147 dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~--~g~~~~~ 200 (241)
|+..... .-.++++.+.++|+ +||.+.+..............+.. .+|+...
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~--~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLK--PGGELYFATDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEE--EEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 4433321 46789999999998 567776665554443333333344 4777664
No 192
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.14 E-value=3.5e-05 Score=75.16 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=77.0
Q ss_pred HHHHHHHHHhccCC-CCCCeEEEecCCCCHHHHHHHHhC-----------------------------------------
Q 026274 55 SVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVG----------------------------------------- 92 (241)
Q Consensus 55 s~~L~~~l~~~~~~-~~~~~VLElGcGtGl~sl~la~~g----------------------------------------- 92 (241)
-..||.-|...... ..+..++|-+||+|.+.+.+|..+
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34555555544332 346789999999999988887631
Q ss_pred ---CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC----ccHHHHHHHHH
Q 026274 93 ---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGADVFYDA----SAFDDLFATIT 163 (241)
Q Consensus 93 ---~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~----~~~~~ll~~~~ 163 (241)
.+++++|+++ ++++.+++|+..+++. +.+...|+.+...+...++||+|+++.++... .....+.+.+-
T Consensus 254 ~~~~~i~G~Did~--~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 254 ELPSKFYGSDIDP--RVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccCceEEEEECCH--HHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 2699999995 7999999999999884 56666677654333223479999998887543 23445555555
Q ss_pred HHhh
Q 026274 164 YLLQ 167 (241)
Q Consensus 164 ~lL~ 167 (241)
+.++
T Consensus 332 ~~lk 335 (702)
T PRK11783 332 RRLK 335 (702)
T ss_pred HHHH
Confidence 5554
No 193
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=1.5e-06 Score=74.43 Aligned_cols=125 Identities=25% Similarity=0.308 Sum_probs=83.8
Q ss_pred CCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC---C--
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK---L-- 119 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~---~-- 119 (241)
..+|..+|+++..|.+++.+++....+.++.++|||+++.++..++..-.|...+.... +.-++..+...+. .
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 142 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC--AGLLLEEIILLSRDLSLEV 142 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCc--HHHHHHHHHhccccccccc
Confidence 47999999999999999999988888999999999999999777776544444444432 2223333332221 1
Q ss_pred ceEEEEeecCCCC--cCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCe
Q 026274 120 NCRVMGLTWGFLD--ASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGS 172 (241)
Q Consensus 120 ~~~~~~l~w~~~~--~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~ 172 (241)
..+...+.|.... +......+|+|+++||+|. ....+++.++..+|....++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~~~~~~ 196 (262)
T KOG2497|consen 143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLLRWRGT 196 (262)
T ss_pred cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHHhcccc
Confidence 1122223332111 1111235999999999999 88888999988877654443
No 194
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.14 E-value=2.8e-05 Score=67.10 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred CCCeEEEecCCCC----HHHHHHHHhC-------CEEEEEcCCCcHHHHHHHHHHHHH-----cCC--------------
Q 026274 70 SGANVVELGAGTS----LPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEM-----NKL-------------- 119 (241)
Q Consensus 70 ~~~~VLElGcGtG----l~sl~la~~g-------~~V~~tD~~~~~~~l~~~~~n~~~-----n~~-------------- 119 (241)
+.-+|+-.||+|| -+++.+...+ .+|++||+|. .+|+.|+.-+-. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~ 173 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARAGIYPSRELLRGLPPELLRRYFERGGD 173 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhcCCCChhHhhccCCHHHHhhhEeecCC
Confidence 4568999999999 3444454443 2899999996 599888642110 110
Q ss_pred -----------ceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 120 -----------NCRVMGLTWGFLDASIFDLNPNIILGADVFYD--ASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 120 -----------~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
.+.|..++...... ....||+|+|-+|+-+ .+.-..+++.++..|+ +||.+++++...
T Consensus 174 ~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~--~gG~LflG~sE~ 244 (268)
T COG1352 174 GSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK--PGGLLFLGHSET 244 (268)
T ss_pred CcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC--CCCEEEEccCcc
Confidence 14444444433211 4568999999999844 5678899999999998 788899886543
No 195
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.10 E-value=1.7e-05 Score=69.20 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=71.4
Q ss_pred CCeEEEecCCCC--H--HHHHHHHhC------CEEEEEcCCCcHHHHHHHHHHHHH-----------------------c
Q 026274 71 GANVVELGAGTS--L--PGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEM-----------------------N 117 (241)
Q Consensus 71 ~~~VLElGcGtG--l--~sl~la~~g------~~V~~tD~~~~~~~l~~~~~n~~~-----------------------n 117 (241)
..+|+-.||.|| . +++.+...+ .+|++||+|+ .+|+.+++.+-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~--~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~ 193 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT--EVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE 193 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH--HHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence 368999999999 3 344444431 3799999995 699888764200 0
Q ss_pred C---------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 118 K---------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 118 ~---------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+ ..++|...+..+...+ ...+||+|+|-+|+.|. +....+++.+.+.|+ |||.+++++.
T Consensus 194 ~~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~--pgG~L~lG~s 263 (287)
T PRK10611 194 GLVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK--PDGLLFAGHS 263 (287)
T ss_pred ceEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC--CCcEEEEeCc
Confidence 1 0245555555432111 13589999999998654 678999999999998 7788888863
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.09 E-value=7e-05 Score=65.86 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=88.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH---------hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE---E
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---------VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR---V 123 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~---------~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~---~ 123 (241)
..+++++.......++.+|+|-.||+|.+-+.+.+ ...++.|.|+++ .++..++.|+..++.... +
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~--~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP--EAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H--HHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcH--HHHHHHHhhhhhhccccccccc
Confidence 33445555544555677899999999977666665 244899999995 688888888877765433 3
Q ss_pred EEeecCCCCcCcCCCCCcEEEEcCCcCCC--c-------------------cHHHHHHHHHHHhhcCCCeEEEEEeec--
Q 026274 124 MGLTWGFLDASIFDLNPNIILGADVFYDA--S-------------------AFDDLFATITYLLQSSPGSVFITTYHN-- 180 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~dvly~~--~-------------------~~~~ll~~~~~lL~~~~~~~~~~~~~~-- 180 (241)
...+.-.........+||+|++++++-.. . ..-.++....+.|++++...++++...
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~ 189 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLF 189 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhh
Confidence 33332211111113589999999877432 0 112466667778875544456666322
Q ss_pred cCc--hhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEeccC
Q 026274 181 RSG--HHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVLNHE 230 (241)
Q Consensus 181 r~~--~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~~~~ 230 (241)
+.. ....+.++++.........-.--+ ..-.....++.+.+...
T Consensus 190 ~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F------~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 190 SSSSEKKIRKYLLENGYIEAVISLPSNLF------KPTGVPTSILILNKKKP 235 (311)
T ss_dssp GSTHHHHHHHHHHHHEEEEEEEE--TTSS------SSSSS-EEEEEEEESSS
T ss_pred ccchHHHHHHHHHhhchhhEEeeccccee------cccCcCceEEEEeeccc
Confidence 222 234455666655544332111111 12333566666665553
No 197
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.08 E-value=0.0001 Score=65.42 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHhcc-------CCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE
Q 026274 53 PCSVILAEYVWQQR-------YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (241)
Q Consensus 53 ~~s~~L~~~l~~~~-------~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (241)
.|++.|.+.+..-. ...+|+++|||||++|-++-.+.+.|++|+++|..+ |-+.+. +...+....
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~---l~~~L~-----~~~~V~h~~ 258 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP---MAQSLM-----DTGQVEHLR 258 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh---cCHhhh-----CCCCEEEEe
Confidence 45555555544322 235789999999999999999999999999999774 433332 233344443
Q ss_pred eecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 126 LTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 126 l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
.+-.....+ ..++|+++ +|++..+. .+++.+.+.+..
T Consensus 259 ~d~fr~~p~--~~~vDwvV-cDmve~P~---rva~lm~~Wl~~ 295 (357)
T PRK11760 259 ADGFKFRPP--RKNVDWLV-CDMVEKPA---RVAELMAQWLVN 295 (357)
T ss_pred ccCcccCCC--CCCCCEEE-EecccCHH---HHHHHHHHHHhc
Confidence 332222111 45799988 57776554 445555566653
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.08 E-value=9.6e-05 Score=60.40 Aligned_cols=117 Identities=20% Similarity=0.321 Sum_probs=75.1
Q ss_pred eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
+++|+|+|.|++|+.+|-... +++++|-.. .=+..++.-+..-+++ +++...+.++ .....+||+|++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~--KK~~FL~~~~~~L~L~nv~v~~~R~E~---~~~~~~fd~v~aR--- 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVG--KKVAFLKEVVRELGLSNVEVINGRAEE---PEYRESFDVVTAR--- 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSH--HHHHHHHHHHHHHT-SSEEEEES-HHH---TTTTT-EEEEEEE---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCc--hHHHHHHHHHHHhCCCCEEEEEeeecc---cccCCCccEEEee---
Confidence 799999999999999998743 899999995 3444555544444443 6677666554 2345689999984
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH---HHHcCCEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL---MVKWGLKCVKL 201 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~~~i 201 (241)
-...+..+++.+..+++ ++|.+++- ..+...+..... .+..+.+...+
T Consensus 123 -Av~~l~~l~~~~~~~l~--~~G~~l~~-KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 123 -AVAPLDKLLELARPLLK--PGGRLLAY-KGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -SSSSHHHHHHHHGGGEE--EEEEEEEE-ESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred -hhcCHHHHHHHHHHhcC--CCCEEEEE-cCCChHHHHHHHHhHHHHhCCEEeee
Confidence 34578899999999988 55554443 333333333333 34555555555
No 199
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.00022 Score=59.95 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=100.0
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceE-EEEee
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VMGLT 127 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~l~ 127 (241)
.+=.+++.|...+....-..+|+.+||+|+-||-+...+.+.|| +|+++|..-+ ++-..+|. ..++. ....+
T Consensus 59 yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~-Ql~~kLR~-----d~rV~~~E~tN 132 (245)
T COG1189 59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG-QLHWKLRN-----DPRVIVLERTN 132 (245)
T ss_pred ccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC-ccCHhHhc-----CCcEEEEecCC
Confidence 34478899999998888888999999999999999999999998 8999999964 23233332 22222 23333
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec-------------cCc--h----hHHH
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN-------------RSG--H----HLIE 188 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~-------------r~~--~----~~~~ 188 (241)
......+.+.+.+|+|++- +=|- .+..++..+..+++++...+.++-... |.. + ..+.
T Consensus 133 ~r~l~~~~~~~~~d~~v~D-vSFI--SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 133 VRYLTPEDFTEKPDLIVID-VSFI--SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred hhhCCHHHcccCCCeEEEE-eehh--hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 3333333344578888853 3332 567778888888874433333322110 111 1 1223
Q ss_pred HHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEEEEe
Q 026274 189 FLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIVL 227 (241)
Q Consensus 189 ~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~i~~ 227 (241)
.++...||.+..+... |- .+-.+++|.+-.-+
T Consensus 210 ~~~~~~g~~~~gl~~S----pi---~G~~GNiE~l~~~~ 241 (245)
T COG1189 210 NFAKELGFQVKGLIKS----PI---KGGKGNIEFLLLLK 241 (245)
T ss_pred HHHhhcCcEEeeeEcc----Cc---cCCCCcEeeeeeee
Confidence 3466779999887321 11 24455777665543
No 200
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.99 E-value=5e-05 Score=66.32 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=45.7
Q ss_pred CCeEEEecCCCC-HHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHc-CCc--eEEEEeec-CCCCcCc--CCCCCcE
Q 026274 71 GANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-KLN--CRVMGLTW-GFLDASI--FDLNPNI 142 (241)
Q Consensus 71 ~~~VLElGcGtG-l~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~--~~~~~l~w-~~~~~~~--~~~~fDl 142 (241)
..++||||+|.. +..+..++ .|-++++||+++ ..++.|++|++.| ++. +++....= ....... ..+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~--~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDP--KSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCH--HHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 457999999966 55666666 477999999995 6999999999999 664 54443321 1111111 1248999
Q ss_pred EEEcCCcCCCcc
Q 026274 143 ILGADVFYDASA 154 (241)
Q Consensus 143 Il~~dvly~~~~ 154 (241)
.+|++++|....
T Consensus 181 tmCNPPFy~s~~ 192 (299)
T PF05971_consen 181 TMCNPPFYSSQE 192 (299)
T ss_dssp EEE-----SS--
T ss_pred EecCCccccChh
Confidence 999999998543
No 201
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.99 E-value=0.00012 Score=58.32 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=84.9
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
.+=|+|-.+|+-+.+.-..-.|.-|||+|.|||.+.-.+.+.|. +++++++++ +....+.+.... .++...
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~--dF~~~L~~~~p~----~~ii~g 101 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP--DFVCHLNQLYPG----VNIING 101 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH--HHHHHHHHhCCC----cccccc
Confidence 34588888888888877777899999999999999999888875 799999995 677766653321 122333
Q ss_pred ecCCCC---cCcCCCCCcEEEEcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 127 TWGFLD---ASIFDLNPNIILGADVFYDASA--FDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 127 ~w~~~~---~~~~~~~fDlIl~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
|..+.. .+..+..||.|+++=++-+.+. --++++.+...|. .+|.++.+.|.+
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYgp 159 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYGP 159 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEecC
Confidence 322221 1223447999999888766543 3455666666664 356677777663
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=6.5e-05 Score=64.33 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=61.6
Q ss_pred HHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~ 138 (241)
.+.+.......++.+|||||+|.|.+...|++.+++|+++++++ .+++.+++... ...++++...|.-....+...
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~- 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKERFA-PYDNLTVINGDALKFDFPSLA- 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHhcc-cccceEEEeCchhcCcchhhc-
Confidence 45555555555678999999999999999999999999999996 58888887654 334455555444433211111
Q ss_pred CCcEEEEcCCcCCC
Q 026274 139 NPNIILGADVFYDA 152 (241)
Q Consensus 139 ~fDlIl~~dvly~~ 152 (241)
.++.|+++=+ |+.
T Consensus 95 ~~~~vVaNlP-Y~I 107 (259)
T COG0030 95 QPYKVVANLP-YNI 107 (259)
T ss_pred CCCEEEEcCC-Ccc
Confidence 5778886644 443
No 203
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.97 E-value=7.3e-05 Score=63.05 Aligned_cols=108 Identities=16% Similarity=0.037 Sum_probs=81.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCC-CCcEEEE--
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL-NPNIILG-- 145 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~-~fDlIl~-- 145 (241)
..+||||||.|-.-+.+|+... .++|+++.. ..+..+.+.+...++ ++++...|.....+...+. +.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~--~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV--PGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh--HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 4799999999999999999865 799999996 477777777888888 8988887776655555554 7776653
Q ss_pred cCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 146 ADVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 146 ~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
.|+.+-.. ....+++.+.+.|+ +||.+.+.......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk--~gG~l~~aTD~~~y 169 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLK--PGGVLHFATDNEEY 169 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcc--CCCEEEEEecCHHH
Confidence 45554322 46789999999998 67777777655444
No 204
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=2.2e-05 Score=65.59 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
...++|||||.|.++-.+...|. +++.+|.|- .|++.++. ++.+++.......| +...+..++++|+|+++-.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~--~M~~s~~~-~qdp~i~~~~~v~D--EE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSY--DMIKSCRD-AQDPSIETSYFVGD--EEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecch--HHHHHhhc-cCCCceEEEEEecc--hhcccccccchhhhhhhhhh
Confidence 35799999999999988888776 899999995 68887775 33344443333222 22224456799999999999
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
++..+++.-+..++..|| |++.|+.+
T Consensus 148 HW~NdLPg~m~~ck~~lK--PDg~Fias 173 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALK--PDGLFIAS 173 (325)
T ss_pred hhhccCchHHHHHHHhcC--CCccchhH
Confidence 999999999999999998 77887755
No 205
>PLN02823 spermine synthase
Probab=97.93 E-value=7e-05 Score=66.78 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=69.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||.||+|.|.....+.+.. .+|+++|+++ ++++.+++....+ +.++++...|...... ...++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~-~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDARAELE-KRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhHHHHh-hCCCCccE
Confidence 45789999999998888777753 3899999995 7999999887644 2345555544333321 22458999
Q ss_pred EEEcCCcCCC-----c---cHHHHHH-HHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDA-----S---AFDDLFA-TITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~-----~---~~~~ll~-~~~~lL~~~~~~~~~~~~ 178 (241)
|+. |+. .+ . .-..+++ .+++.|+ ++|++++-.
T Consensus 180 Ii~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~--p~Gvlv~q~ 220 (336)
T PLN02823 180 IIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLN--PGGIFVTQA 220 (336)
T ss_pred EEe-cCC-CccccCcchhhccHHHHHHHHHHhcC--CCcEEEEec
Confidence 995 331 21 1 1235666 7889998 677776543
No 206
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.89 E-value=0.001 Score=62.95 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=53.1
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC----------CEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCC---cCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLD---ASI 135 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g----------~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~---~~~ 135 (241)
...+|||.|||+|.+.+.++... .++++.|+++ .+++.++.|+...+ ....+...+..... ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~--~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK--TLLKRAKKLLGEFALLEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH--HHHHHHHHHHhhcCCCCceeeeccccccccccccc
Confidence 45689999999998877776532 3689999995 69999998887654 22333322211110 011
Q ss_pred CCCCCcEEEEcCCcCC
Q 026274 136 FDLNPNIILGADVFYD 151 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~ 151 (241)
..++||+|+++++.-.
T Consensus 109 ~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 109 YLDLFDIVITNPPYGR 124 (524)
T ss_pred ccCcccEEEeCCCccc
Confidence 1247999999998753
No 207
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.82 E-value=0.0002 Score=57.01 Aligned_cols=78 Identities=13% Similarity=-0.048 Sum_probs=58.0
Q ss_pred EEEcCCCcHHHHHHHHHHHHHcC----CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCC
Q 026274 96 TLTDDSNRIEVLKNMRRVCEMNK----LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPG 171 (241)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~ 171 (241)
+++|+|+ +||+.++++....+ .++++...+..+. +..+++||+|+++.++.+..+...+++.+.++|+ ||
T Consensus 1 ~GvD~S~--~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk--pG 74 (160)
T PLN02232 1 MGLDFSS--EQLAVAATRQSLKARSCYKCIEWIEGDAIDL--PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK--PG 74 (160)
T ss_pred CeEcCCH--HHHHHHHHhhhcccccCCCceEEEEechhhC--CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC--cC
Confidence 4789995 79999987665322 2467777666543 3445689999999999999999999999999998 55
Q ss_pred eEEE-EEee
Q 026274 172 SVFI-TTYH 179 (241)
Q Consensus 172 ~~~~-~~~~ 179 (241)
|.++ +.+.
T Consensus 75 G~l~i~d~~ 83 (160)
T PLN02232 75 SRVSILDFN 83 (160)
T ss_pred eEEEEEECC
Confidence 5544 4443
No 208
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.80 E-value=0.00019 Score=59.73 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=80.7
Q ss_pred CCCeEEEecCCCCHHHHHH-HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~l-a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
...++||.|||.|.++-.+ ...-.+|-++|..+ ..++.+++....... ..++...-..++..+ ..+||+|++-=
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~--~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE--KFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H--HHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCH--HHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEEehH
Confidence 4568999999999988755 44545899999995 588888876554222 234444333333211 35899999887
Q ss_pred CcCCC--ccHHHHHHHHHHHhhcCCCeEEEEE----------eec-----cCchhHHHHHHHHcCCEEEEEecCCCCC
Q 026274 148 VFYDA--SAFDDLFATITYLLQSSPGSVFITT----------YHN-----RSGHHLIEFLMVKWGLKCVKLVDGFSFL 208 (241)
Q Consensus 148 vly~~--~~~~~ll~~~~~lL~~~~~~~~~~~----------~~~-----r~~~~~~~~~~~~~g~~~~~i~~~~~~~ 208 (241)
|+-|. .++-.+++.++..|+ |+|+|++- +.. .++...+..+.++.|+++..-..+-.++
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~--~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALK--PNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEE--EEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--
T ss_pred hhccCCHHHHHHHHHHHHHhCc--CCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC
Confidence 77664 578889999999998 45665532 111 1123456777899999998874443333
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.79 E-value=0.00047 Score=59.82 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPN 141 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~~fD 141 (241)
..++..+|||+|||+|....++... + .+++++|.|+ .|++..+.-... ..... ...|..... ...-...|
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~--~~~~l~~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~D 104 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP--EMLELAKRLLRA-GPNNR--NAEWRRVLYRDFLPFPPDD 104 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH--HHHHHHHHHHhc-ccccc--cchhhhhhhcccccCCCCc
Confidence 3567789999999999766555543 2 3799999995 688877664432 22111 111211110 11112459
Q ss_pred EEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH---HHHcCCEE
Q 026274 142 IILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL---MVKWGLKC 198 (241)
Q Consensus 142 lIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~---~~~~g~~~ 198 (241)
+|+++.++-..+. +...+.+..+-+...+.++++....+.+...+..+ +.+.|+.+
T Consensus 105 Lvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 105 LVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred EEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence 9999999988766 55555566553333446777776666665544433 33445444
No 210
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.76 E-value=0.00012 Score=56.65 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=46.8
Q ss_pred eEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCC
Q 026274 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGF 130 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~ 130 (241)
.+||+|||+|..++.+++.+. +|++.|.++ ++.+.+++|++.|+. ++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~--~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP--DAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH--HHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999876 699999995 799999999998875 46666665554
No 211
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.75 E-value=0.0014 Score=54.29 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=80.1
Q ss_pred EEeccHH--HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEee
Q 026274 50 FVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (241)
Q Consensus 50 ~~W~~s~--~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (241)
..||..- .+.+||.+. .++..|-|+|||-+.++..+. .+.+|...|+-.. +. .+..-|
T Consensus 53 ~~WP~nPvd~iI~~l~~~---~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~--------------n~--~Vtacd 112 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR---PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP--------------NP--RVTACD 112 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-S--------------ST--TEEES-
T ss_pred hcCCCCcHHHHHHHHHhc---CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC--------------CC--CEEEec
Confidence 3577654 345565532 345689999999998885543 3457999998731 11 234444
Q ss_pred cCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE-EEeeccCch-hHHHHHHHHcCCEEEEEecCC
Q 026274 128 WGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI-TTYHNRSGH-HLIEFLMVKWGLKCVKLVDGF 205 (241)
Q Consensus 128 w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~-~~~~~r~~~-~~~~~~~~~~g~~~~~i~~~~ 205 (241)
... -|+.+++.|+++.+=.+-. .+....+....++|+ ++|.++ .....|-.. ..+....++.||++....
T Consensus 113 ia~--vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK--~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d--- 184 (219)
T PF05148_consen 113 IAN--VPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLK--PGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD--- 184 (219)
T ss_dssp TTS---S--TT-EEEEEEES---S-S-HHHHHHHHHHHEE--EEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---
T ss_pred Ccc--CcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheec--cCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc---
Confidence 433 2566778999987655554 478899999999999 556554 445555542 233344689999988751
Q ss_pred CCCCcccccccCCCeEEEEEEeccCCCCC
Q 026274 206 SFLPHYKARELNGNIQLAEIVLNHESPEE 234 (241)
Q Consensus 206 ~~~p~~~~~~~~~~~~l~~i~~~~~~~~~ 234 (241)
.......++++.+.....++
T Consensus 185 ---------~~n~~F~~f~F~K~~~~~~~ 204 (219)
T PF05148_consen 185 ---------ESNKHFVLFEFKKIRKKEPK 204 (219)
T ss_dssp -----------STTEEEEEEEE-SSS-TT
T ss_pred ---------cCCCeEEEEEEEEcCccccc
Confidence 23445677777766655443
No 212
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.74 E-value=0.00041 Score=59.76 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=71.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~ 134 (241)
..-+++.+.......++..|||+|+|+|.++..+++.+.+|+++++++ .+.+.+++... ...++++...|.-+....
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~--~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDP--DLAKHLKERFA-SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSH--HHHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcH--hHHHHHHHHhh-hcccceeeecchhccccH
Confidence 344555555555555888999999999999999999999999999995 68888887665 455677777766654332
Q ss_pred c-CCCCCcEEEEcCCcCCCccHHHHHHHHHHHh
Q 026274 135 I-FDLNPNIILGADVFYDASAFDDLFATITYLL 166 (241)
Q Consensus 135 ~-~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL 166 (241)
. .......|+++=+ |+ .-.+++..+...-
T Consensus 92 ~~~~~~~~~vv~NlP-y~--is~~il~~ll~~~ 121 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLP-YN--ISSPILRKLLELY 121 (262)
T ss_dssp GHCSSSEEEEEEEET-GT--GHHHHHHHHHHHG
T ss_pred HhhcCCceEEEEEec-cc--chHHHHHHHhhcc
Confidence 1 1234557777643 43 3345555555443
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.71 E-value=0.00028 Score=60.40 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=64.5
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC--CceEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRV 123 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~--~~~~~ 123 (241)
+.|.++-.-..++...+. ......+..|||+|-|||.+...+...|++|+++++++ .|+..+.+..+.-. ...++
T Consensus 35 d~GQHilkNp~v~~~I~~-ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLqV 111 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVE-KADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQV 111 (315)
T ss_pred ccchhhhcCHHHHHHHHh-ccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceeeE
Confidence 455555555555544443 33445667899999999999999999999999999997 59988888776433 23455
Q ss_pred EEeecCCCCcCcCCCCCcEEEEc
Q 026274 124 MGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 124 ~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
...|.-..+. ..||+++++
T Consensus 112 ~~gD~lK~d~----P~fd~cVsN 130 (315)
T KOG0820|consen 112 LHGDFLKTDL----PRFDGCVSN 130 (315)
T ss_pred EecccccCCC----cccceeecc
Confidence 5555443322 257887753
No 214
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.71 E-value=0.00077 Score=62.77 Aligned_cols=137 Identities=9% Similarity=0.090 Sum_probs=84.9
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeec
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w 128 (241)
++|...+..+.. ...+|.+|||++||.|--+..+|... ..|++.|+++ .-++.+++|++.-|+. +.+...|-
T Consensus 98 ~sS~l~~~~L~~--~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~--~R~~~L~~nl~r~G~~nv~v~~~D~ 173 (470)
T PRK11933 98 ASSMLPVAALFA--DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA--SRVKVLHANISRCGVSNVALTHFDG 173 (470)
T ss_pred HHHHHHHHHhcc--CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCeEEEEeCch
Confidence 344444444432 23467899999999998888888752 3899999996 5889999999988874 34444333
Q ss_pred CCCCcCcCCCCCcEEEE----c--CCcCCCc----------------cHHHHHHHHHHHhhcCCCeEEEEEe--eccCch
Q 026274 129 GFLDASIFDLNPNIILG----A--DVFYDAS----------------AFDDLFATITYLLQSSPGSVFITTY--HNRSGH 184 (241)
Q Consensus 129 ~~~~~~~~~~~fDlIl~----~--dvly~~~----------------~~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~ 184 (241)
.... ......||.|+. | -++...+ ....+++...++|++ +|.++|.++ ......
T Consensus 174 ~~~~-~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp-GG~LVYSTCT~~~eENE 251 (470)
T PRK11933 174 RVFG-AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP-GGTLVYSTCTLNREENQ 251 (470)
T ss_pred hhhh-hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECCCCCHHHHH
Confidence 2211 123457999983 2 1121111 236778888888883 334455443 233344
Q ss_pred hHHHHHHHHcC
Q 026274 185 HLIEFLMVKWG 195 (241)
Q Consensus 185 ~~~~~~~~~~g 195 (241)
..+.+++++++
T Consensus 252 ~vV~~~L~~~~ 262 (470)
T PRK11933 252 AVCLWLKETYP 262 (470)
T ss_pred HHHHHHHHHCC
Confidence 55667777764
No 215
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00082 Score=60.42 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=81.9
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-----------------------------------------EE
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-----------------------------------------NV 95 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-----------------------------------------~V 95 (241)
.||.-|.....-..+..++|-=||+|.+.+.+|..+. .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3444444444444557899999999999999999875 27
Q ss_pred EEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCCCCcEEEEcCCcCC----Cc----cHHHHHHHHHHH
Q 026274 96 TLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGADVFYD----AS----AFDDLFATITYL 165 (241)
Q Consensus 96 ~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~----~~----~~~~ll~~~~~l 165 (241)
++.|+++ .+++.++.|++..|+. +.+.+.+..+...+. ..+|+||++.+.=. .. ....+.+++++.
T Consensus 258 ~G~Did~--r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 258 YGSDIDP--RHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred EEecCCH--HHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 7999995 6999999999999885 777777777664443 58999998877633 11 344555667677
Q ss_pred hhcCCCeEEEEE
Q 026274 166 LQSSPGSVFITT 177 (241)
Q Consensus 166 L~~~~~~~~~~~ 177 (241)
++ +...++++
T Consensus 334 ~~--~ws~~v~t 343 (381)
T COG0116 334 LA--GWSRYVFT 343 (381)
T ss_pred hc--CCceEEEE
Confidence 65 44444444
No 216
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00022 Score=59.09 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=81.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
.+|.+||++|=|.|++.-++..... .=+.++.++ ++++.++++.-...-++.+....|.+....+.+..||=|+ -|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp--~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~-yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP--DVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY-YD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH--HHHHHHHhcccccccceEEEecchHhhhccccccCcceeE-ee
Confidence 5788999999999999888887654 556677774 7999999877666667778888999988888888999987 34
Q ss_pred Cc-CCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VF-YDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vl-y~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+ .+-++...+.+-+-+||| |+|++-..
T Consensus 177 Ty~e~yEdl~~~hqh~~rLLk--P~gv~Syf 205 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVRLLK--PEGVFSYF 205 (271)
T ss_pred chhhHHHHHHHHHHHHhhhcC--CCceEEEe
Confidence 44 445677788888999999 55655443
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.68 E-value=8.4e-05 Score=60.34 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEEc--C
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA--D 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~~--d 147 (241)
...+-|||+|+|.+|+.+|+...+|++++.++ .....+.+|+..++. +.++...|..+.. + ++.|+|+|- |
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP--k~a~~a~eN~~v~g~~n~evv~gDA~~y~---f-e~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDP--KRARLAEENLHVPGDVNWEVVVGDARDYD---F-ENADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCc--HHHHHhhhcCCCCCCcceEEEeccccccc---c-cccceeHHHHhh
Confidence 35799999999999999999966999999997 478899999887775 5666665544331 2 367888753 3
Q ss_pred CcCCCccHHHHHHHHHHHhhc
Q 026274 148 VFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~ 168 (241)
+.--.+...+.+..+...|+.
T Consensus 107 TaLi~E~qVpV~n~vleFLr~ 127 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRY 127 (252)
T ss_pred HHhhcccccHHHHHHHHHhhc
Confidence 333344555666666667763
No 218
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.67 E-value=0.0016 Score=48.59 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=61.9
Q ss_pred EEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCC-CCCcEEEEcCC
Q 026274 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFD-LNPNIILGADV 148 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~-~~fDlIl~~dv 148 (241)
++|+|||+|... .++... ..++++|.++ .++...+......... +.+...++.....+... ..||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSP--EMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCH--HHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999876 444443 3789999995 5676644333222221 34555554432122222 37999944444
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.++.. ...++..+.+.++ +++.+++....
T Consensus 129 ~~~~~-~~~~~~~~~~~l~--~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLLP-PAKALRELLRVLK--PGGRLVLSDLL 157 (257)
T ss_pred hhcCC-HHHHHHHHHHhcC--CCcEEEEEecc
Confidence 44444 8889999999998 46666555433
No 219
>PRK00536 speE spermidine synthase; Provisional
Probab=97.64 E-value=0.00069 Score=58.35 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=67.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHH-----HHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-----EMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~-----~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
+.++||=+|.|-|.....+.+...+|+.+|+++ ++++.+++-. ..++.++++.. |-. ....++||+||
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~--~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~---~~~~~~fDVII 144 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE--KILDSFISFFPHFHEVKNNKNFTHAK--QLL---DLDIKKYDLII 144 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH--HHHHHHHHHCHHHHHhhcCCCEEEee--hhh---hccCCcCCEEE
Confidence 458999999999999999999866999999996 6998888722 22334454443 321 11235899999
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.|..|. +.+.+.+++.|+ ++|+++.-
T Consensus 145 -vDs~~~----~~fy~~~~~~L~--~~Gi~v~Q 170 (262)
T PRK00536 145 -CLQEPD----IHKIDGLKRMLK--EDGVFISV 170 (262)
T ss_pred -EcCCCC----hHHHHHHHHhcC--CCcEEEEC
Confidence 566554 567788999998 67776653
No 220
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.63 E-value=0.00026 Score=62.01 Aligned_cols=119 Identities=20% Similarity=0.182 Sum_probs=75.4
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHc---CC----ceEE
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN---KL----NCRV 123 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n---~~----~~~~ 123 (241)
|--+.++-.|. .++..+++||||-|-=-+---+.|. .++++||.+. .++.+++..+.. .. .+.+
T Consensus 105 wIKs~LI~~y~------~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev--SI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 105 WIKSVLINLYT------KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV--SINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred HHHHHHHHHHh------ccccccceeccCCcccHhHhhhhcccceEeeehhhc--cHHHHHHHHHHHHhhhhcccceeEE
Confidence 55555555543 2456799999998844333334455 7999999974 777777654321 11 2344
Q ss_pred EEeecCCCC-c---CcCCCCCcEEEEcCCcCC----CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 124 MGLTWGFLD-A---SIFDLNPNIILGADVFYD----ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 124 ~~l~w~~~~-~---~~~~~~fDlIl~~dvly~----~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
...|-.... . +..+.+||+|=+-=++++ .+...-++..+..+|+ |||+|+-+.+.
T Consensus 177 ~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk--pGG~FIgTiPd 239 (389)
T KOG1975|consen 177 IAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK--PGGVFIGTIPD 239 (389)
T ss_pred EEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC--CCcEEEEecCc
Confidence 443322111 1 112345999977777765 3577888999999998 88888887654
No 221
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.58 E-value=0.00056 Score=56.84 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=58.3
Q ss_pred CCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH-------HHH
Q 026274 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR-------VCE 115 (241)
Q Consensus 45 ~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~-------n~~ 115 (241)
..+|=..+..- ++.+ ......++...+|||||.|-+-+.+|. .++ +.+|+++.+ ...+.++. ..+
T Consensus 21 ~~YGEi~~~~~---~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~--~~~~~a~~~~~~~~~~~~ 94 (205)
T PF08123_consen 21 ETYGEISPEFV---SKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILP--ELHDLAEELLEELKKRMK 94 (205)
T ss_dssp CCGGGCHHHHH---HHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SH--HHHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHH---HHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEech--HHHHHHHHHHHHHHHHHH
Confidence 35665544332 2222 223345677899999999977666664 466 599999996 34433332 222
Q ss_pred HcCCceEEEEeecCCCCcCcC----CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 116 MNKLNCRVMGLTWGFLDASIF----DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 116 ~n~~~~~~~~l~w~~~~~~~~----~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
..+....-..+.-+++..... -...|+|+++...|.++....|.+.+. -|+ +|..|+.
T Consensus 95 ~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~-~lk--~G~~IIs 156 (205)
T PF08123_consen 95 HYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLL-ELK--PGARIIS 156 (205)
T ss_dssp HCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHT-TS---TT-EEEE
T ss_pred HhhcccccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHh-cCC--CCCEEEE
Confidence 333322222232333322110 025799999999998776666644443 333 5666554
No 222
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.001 Score=55.00 Aligned_cols=119 Identities=14% Similarity=0.091 Sum_probs=73.8
Q ss_pred cceEEeccHHHHHHHHHhccC--CCCCCeEEEecCCCCHHHHHHHHh-CC---EEEEEcCCCcHHHHHHHHHHHHHcC--
Q 026274 47 YGLFVWPCSVILAEYVWQQRY--RFSGANVVELGAGTSLPGLVAAKV-GS---NVTLTDDSNRIEVLKNMRRVCEMNK-- 118 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~--~~~~~~VLElGcGtGl~sl~la~~-g~---~V~~tD~~~~~~~l~~~~~n~~~n~-- 118 (241)
.|..+--++..+-.++..... ..+|.+.||+|+|||.++..++++ |+ .++++|.-+ ++++..++|+...-
T Consensus 57 ~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~--eLVe~Sk~nl~k~i~~ 134 (237)
T KOG1661|consen 57 IGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP--ELVEYSKKNLDKDITT 134 (237)
T ss_pred cCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH--HHHHHHHHHHHhhccC
Confidence 443333455555555554433 568999999999999998888865 44 458999884 79999999887532
Q ss_pred ---------CceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 119 ---------LNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 119 ---------~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+..+...|-..... ...+||.|... .....+.+.+-..|+ ++|.++++
T Consensus 135 ~e~~~~~~~~~l~ivvGDgr~g~~--e~a~YDaIhvG------Aaa~~~pq~l~dqL~--~gGrllip 192 (237)
T KOG1661|consen 135 SESSSKLKRGELSIVVGDGRKGYA--EQAPYDAIHVG------AAASELPQELLDQLK--PGGRLLIP 192 (237)
T ss_pred chhhhhhccCceEEEeCCccccCC--ccCCcceEEEc------cCccccHHHHHHhhc--cCCeEEEe
Confidence 123333333322211 13489998754 344455566666676 44444544
No 223
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.55 E-value=0.0027 Score=54.86 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=76.7
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC----c----------------------eE-
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL----N----------------------CR- 122 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~----~----------------------~~- 122 (241)
...+||==|||.|.++..+|++|..+.+.+.|- -|+ +..|.-+|+. . +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~--~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSY--FML--LASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchH--HHH--HHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 456899999999999999999999999999994 243 3333333320 0 00
Q ss_pred -------------EEEeecCCCCcCcC----CCCCcEEEEcCCcCC---CccHHHHHHHHHHHhhcCCCeEEE-EE---e
Q 026274 123 -------------VMGLTWGFLDASIF----DLNPNIILGADVFYD---ASAFDDLFATITYLLQSSPGSVFI-TT---Y 178 (241)
Q Consensus 123 -------------~~~l~w~~~~~~~~----~~~fDlIl~~dvly~---~~~~~~ll~~~~~lL~~~~~~~~~-~~---~ 178 (241)
-..+-+|++.+-.. .++||.|+.+ |. ..++-..++++.++|| |||+.+ ++ |
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLk--pgG~WIN~GPLly 206 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLK--PGGYWINFGPLLY 206 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhc--cCCEEEecCCccc
Confidence 01122333322111 2489999987 43 3467778899999998 455443 11 2
Q ss_pred eccC-----------chhHHHHHHHHcCCEEEEE
Q 026274 179 HNRS-----------GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 179 ~~r~-----------~~~~~~~~~~~~g~~~~~i 201 (241)
+... +.+.+..+.++.||+...-
T Consensus 207 h~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 207 HFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred cCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 2222 1334556678999998764
No 224
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.54 E-value=0.0054 Score=53.28 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCCeEEEecCCCCHHHHHHH-HhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCc-CcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAA-KVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDA-SIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la-~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~-~~~~~~fDl 142 (241)
+.-+||||-||.|.-=+-+. +.. .+|.+.|+++ ..++.-++-++.+++. +++.+.|..+... .....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~--~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSP--INVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCH--HHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 45689999999995433333 332 3899999996 5888888888888874 3777777655321 122347899
Q ss_pred EEEcCCcCCCcc---HHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILGADVFYDASA---FDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~~dvly~~~~---~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
++.+-++...++ +...++.+..++. |||.++.+.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~--pgG~lIyTg 249 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALE--PGGYLIYTG 249 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhC--CCcEEEEcC
Confidence 999998876555 5566777888886 566555543
No 225
>PRK10742 putative methyltransferase; Provisional
Probab=97.52 E-value=0.00077 Score=57.36 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=57.0
Q ss_pred eEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc------C----CceEEEEeecCCCCcCcCCCCCcE
Q 026274 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------K----LNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n------~----~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+|||+-||+|..|+.++..|++|+++|.++ .+...+++|++.- + -++++...+-.+.... ....||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p--~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNP--VVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-ITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-CCCCCcE
Confidence 899999999999999999999999999996 5777888887652 1 1244444443333222 2237999
Q ss_pred EEEcCCcCCCccHHH
Q 026274 143 ILGADVFYDASAFDD 157 (241)
Q Consensus 143 Il~~dvly~~~~~~~ 157 (241)
|+ .|+.|-...-..
T Consensus 168 VY-lDPMfp~~~ksa 181 (250)
T PRK10742 168 VY-LDPMFPHKQKSA 181 (250)
T ss_pred EE-ECCCCCCCcccc
Confidence 99 566665544333
No 226
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00025 Score=64.39 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=61.9
Q ss_pred eEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC-CCCCcEEEEcCCcC
Q 026274 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGADVFY 150 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~-~~~fDlIl~~dvly 150 (241)
-|||+|+|||++|+++++.|+ +|++.+.-. -|.+.+++....|+....+....-...+-... ....|+++..+..-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk--PM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt 146 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK--PMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT 146 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhc--hHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence 489999999999999999998 899999986 39999999999998643332221111100000 12466666554432
Q ss_pred C---CccHHHHHHHHHHHhhcCC
Q 026274 151 D---ASAFDDLFATITYLLQSSP 170 (241)
Q Consensus 151 ~---~~~~~~ll~~~~~lL~~~~ 170 (241)
. ...++.+-.....|+.++.
T Consensus 147 EligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhccccchhHHHHHHHhcccCC
Confidence 2 2345555555666666543
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.50 E-value=0.0005 Score=53.56 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHH-----h-CCEEEEEcCCCcHHHHHHHHHHHHHcC
Q 026274 69 FSGANVVELGAGTSLPGLVAAK-----V-GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~-----~-g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (241)
.+...|+|+|||-|.+|..++. . +.+|+++|.++ ..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE--SLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc--HHHHHHHHHHHHhc
Confidence 4567899999999999999999 3 55999999996 47777776665544
No 228
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.44 E-value=0.0013 Score=61.85 Aligned_cols=126 Identities=9% Similarity=0.007 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCcCcCCCCCcEEEE-
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILG- 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~~~~~~~fDlIl~- 145 (241)
.+..+||||||.|-..+.+|+... .++|+|+.. ..+..+.+.+...++ ++.+...++........+.++|-|..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~--~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYL--NGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 356799999999988888888754 799999996 355444444555554 45555444332222233456777654
Q ss_pred -cCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHc-CCEEE
Q 026274 146 -ADVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKW-GLKCV 199 (241)
Q Consensus 146 -~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~ 199 (241)
.|+.+... .-+.+++.+.++|+ +||.+.+................+. +|+..
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk--~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLK--DNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcC--CCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 45554322 46788999999998 6677766654433332222223334 36543
No 229
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.43 E-value=0.0049 Score=51.33 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=86.1
Q ss_pred eccHHHHHHHHHhccCCCC----CCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 52 WPCSVILAEYVWQQRYRFS----GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~----~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
-+++..|.+||.......+ ..++||+||=+.-.. ++..+. .|+.+|+++. . -.+.+.
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~--------------~--~~I~qq 90 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQ--------------H--PGILQQ 90 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCC--------------C--CCceee
Confidence 4789999999987643332 258999999744322 223333 7999999962 1 133456
Q ss_pred ecCCCCcC-cCCCCCcEEEEcCCcCCCcc---HHHHHHHHHHHhhcCCC-----eEEEEEe----eccCc-hhHHHHHHH
Q 026274 127 TWGFLDAS-IFDLNPNIILGADVFYDASA---FDDLFATITYLLQSSPG-----SVFITTY----HNRSG-HHLIEFLMV 192 (241)
Q Consensus 127 ~w~~~~~~-~~~~~fDlIl~~dvly~~~~---~~~ll~~~~~lL~~~~~-----~~~~~~~----~~r~~-~~~~~~~~~ 192 (241)
|+-+...+ ...++||+|.+|=|+-+.++ --..++.+.++|++++. ..++++. ..|+. .+.+..+++
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~ 170 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIME 170 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHH
Confidence 66554322 23468999999999977554 44678888899986554 3333332 22333 345567889
Q ss_pred HcCCEEEEE
Q 026274 193 KWGLKCVKL 201 (241)
Q Consensus 193 ~~g~~~~~i 201 (241)
..||.....
T Consensus 171 ~LGf~~~~~ 179 (219)
T PF11968_consen 171 SLGFTRVKY 179 (219)
T ss_pred hCCcEEEEE
Confidence 999998875
No 230
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.41 E-value=0.00047 Score=60.38 Aligned_cols=58 Identities=5% Similarity=-0.093 Sum_probs=44.2
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.++..+||.+||.|--+..+++.. .+|++.|.++ +|++.++++... ..++.+...+..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~--~al~~ak~~L~~-~~ri~~i~~~f~ 78 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP--DAIAAAKDRLKP-FGRFTLVHGNFS 78 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH--HHHHHHHHhhcc-CCcEEEEeCCHH
Confidence 456799999999999999999873 5899999995 799999877654 334555444443
No 231
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.39 E-value=0.0016 Score=55.61 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHH-----cCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-----NKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~-----n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
+.++||-||-|.|...-.+.+.. .+|+++|+++ ++++.+++-... ++.++++...|-..........+||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 57899999999998888888865 4899999995 699988875443 23456666544433322222228999
Q ss_pred EEE--cCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 143 ILG--ADVFYDAS--AFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 143 Il~--~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
|+. .|...... .-..+++.+++.|+ ++|++++-.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~--~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLK--PDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEE--EEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcC--CCcEEEEEc
Confidence 995 33222111 24688999999998 677766554
No 232
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.021 Score=47.24 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-C--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
.+++.|.+...++.-..++.+|+||||-.|-++..++++. . .|+++|+.|- +.+ ..+.+.+.|..
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-~~~-----------~~V~~iq~d~~ 95 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-KPI-----------PGVIFLQGDIT 95 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-ccC-----------CCceEEeeecc
Confidence 5677787777777444567899999999999999999873 3 4999999972 111 12566667666
Q ss_pred CCCc------CcCCCCCcEEEEcCCcCCC------------ccHHHHHHHHHHHhhcCCCeEEEEE-eeccCchhHHHHH
Q 026274 130 FLDA------SIFDLNPNIILGADVFYDA------------SAFDDLFATITYLLQSSPGSVFITT-YHNRSGHHLIEFL 190 (241)
Q Consensus 130 ~~~~------~~~~~~fDlIl~~dvly~~------------~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~~~~~~~ 190 (241)
+... .....++|+|++ |.--+. .....+++.....|+ ++|.|++- ++.......+..+
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~--~~G~fv~K~fqg~~~~~~l~~~ 172 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLK--PGGSFVAKVFQGEDFEDLLKAL 172 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC--CCCeEEEEEEeCCCHHHHHHHH
Confidence 5431 111234699882 322211 234455566667776 55555554 4444444444444
Q ss_pred HHHcCCEEEEEecCCCCCCccccc-ccCCCeEEEEEEecc
Q 026274 191 MVKWGLKCVKLVDGFSFLPHYKAR-ELNGNIQLAEIVLNH 229 (241)
Q Consensus 191 ~~~~g~~~~~i~~~~~~~p~~~~~-~~~~~~~l~~i~~~~ 229 (241)
.+ .|....+. ++. ..+...|++-+-+..
T Consensus 173 ~~--~F~~v~~~---------KP~aSR~~S~E~y~v~~~~ 201 (205)
T COG0293 173 RR--LFRKVKIF---------KPKASRKRSREIYLVAKGF 201 (205)
T ss_pred HH--hhceeEEe---------cCccccCCCceEEEEEecc
Confidence 33 34444331 112 233445777776554
No 233
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0085 Score=51.51 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=77.8
Q ss_pred cCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCC
Q 026274 66 RYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~f 140 (241)
.+...|.+|||-|.|+|-+|.++++.- .++.-.|+.+ .-.+.+++-.+..++ ++++..-|............+
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~--~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE--TRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH--HHHHHHHHHHHHhCCCcceEEEEeecccCCcccccccc
Confidence 345678999999999999999999963 2799999985 355666666777765 455555554433222223466
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHH---HHHHHcCCEEEEEecC
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIE---FLMVKWGLKCVKLVDG 204 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~---~~~~~~g~~~~~i~~~ 204 (241)
|.|+. +.+.+-..+.-+..+|+..++ .++++.+ .-+..+ ..+.+.||.-..+.+.
T Consensus 179 DaVFL-----DlPaPw~AiPha~~~lk~~g~--r~csFSP--CIEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 179 DAVFL-----DLPAPWEAIPHAAKILKDEGG--RLCSFSP--CIEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred ceEEE-----cCCChhhhhhhhHHHhhhcCc--eEEeccH--HHHHHHHHHHHHHhCCCceEEEEEe
Confidence 66664 344444455555557774433 3333321 111111 2356789877666443
No 234
>PHA01634 hypothetical protein
Probab=97.32 E-value=0.0012 Score=50.41 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=54.9
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceE-EEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~~l~w~~~~~~~~~~~fDlIl 144 (241)
.+++++|+|+|++.|--+++++..|| .|++.+.++ .+.+..++|++.|.+-.. +....|... -++||+..
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~--kl~k~~een~k~nnI~DK~v~~~eW~~~-----Y~~~Di~~ 97 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE--KLRKKWEEVCAYFNICDKAVMKGEWNGE-----YEDVDIFV 97 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCH--HHHHHHHHHhhhheeeeceeeccccccc-----CCCcceEE
Confidence 46899999999999999999999999 799999996 588899999998876432 233467541 23677654
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.31 E-value=0.0026 Score=52.87 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=68.1
Q ss_pred EEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCCC-CCcEEEEcCC
Q 026274 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDL-NPNIILGADV 148 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~~-~fDlIl~~dv 148 (241)
|.|+||-=|.++++|.+.|. +++++|+++ .-++.+++|+..+++. +.++. ++....+... ..|+|+.+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~--gpL~~A~~~i~~~~l~~~i~~rl---gdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINP--GPLEKAKENIAKYGLEDRIEVRL---GDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTT-TTTEEEEE----SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCcccEEEEE---CCcccccCCCCCCCEEEEecC
Confidence 68999999999999999987 799999995 6999999999998864 44333 3333333332 3677764422
Q ss_pred cCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 149 FYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 149 ly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
=- ..+..+++.....++ +...+++.. .. ....++..+.++||....
T Consensus 76 GG--~lI~~ILe~~~~~~~--~~~~lILqP-~~-~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 76 GG--ELIIEILEAGPEKLS--SAKRLILQP-NT-HAYELRRWLYENGFEIID 121 (205)
T ss_dssp -H--HHHHHHHHHTGGGGT--T--EEEEEE-SS--HHHHHHHHHHTTEEEEE
T ss_pred CH--HHHHHHHHhhHHHhc--cCCeEEEeC-CC-ChHHHHHHHHHCCCEEEE
Confidence 11 133344444433332 223455542 22 334455666788988765
No 236
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.30 E-value=0.0057 Score=52.23 Aligned_cols=108 Identities=14% Similarity=0.160 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
....|-|+|||-+-++. +...+|...|+-.. +-++...|..+ -++.+++.|+++.+=.+
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~----------------~~~V~~cDm~~--vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVAV----------------NERVIACDMRN--VPLEDESVDVAVFCLSL 238 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeecC----------------CCceeeccccC--CcCccCcccEEEeeHhh
Confidence 44579999999986554 44457888888741 22344445544 35667899999876544
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEEEE-eeccCch-hHHHHHHHHcCCEEEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFITT-YHNRSGH-HLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~~~-~~~r~~~-~~~~~~~~~~g~~~~~i 201 (241)
.- .++..+++...++|+ +||.++++ ...|... ..+.......||.+.+.
T Consensus 239 Mg-tn~~df~kEa~RiLk--~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 239 MG-TNLADFIKEANRILK--PGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred hc-ccHHHHHHHHHHHhc--cCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 43 578899999999998 56666655 4444332 12333457889998876
No 237
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0032 Score=54.87 Aligned_cols=100 Identities=11% Similarity=0.086 Sum_probs=68.3
Q ss_pred CeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHc-----CCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
++||-||-|.|-..-.+.+.. .+++.+|+++ ++++.+++-...- ..++.+..-|-.++... ...+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-CEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HHHHHHHHhccCcccccCCCceEEEeccHHHHHHh-CCCcCCEEE
Confidence 699999999999999999986 4899999996 6998888754322 23444444443333222 233899999
Q ss_pred Ec--CCcCCC---ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GA--DVFYDA---SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~--dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.- |.. -+ -.-..+++.++++|+ ++|+++.-
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~--~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALK--EDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcC--CCcEEEEe
Confidence 42 221 11 124788999999998 66766655
No 238
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.14 E-value=0.0011 Score=61.33 Aligned_cols=128 Identities=9% Similarity=-0.004 Sum_probs=77.1
Q ss_pred CcceEEeccHHHHHHHHHhccCC-CCC---CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCc-HHHHHHHHHHHHHcCCc
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYR-FSG---ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR-IEVLKNMRRVCEMNKLN 120 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~-~~~---~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~-~~~l~~~~~n~~~n~~~ 120 (241)
+.|.....++..-.++|.+.... ..+ ..+||+|||+|.+|..+..++..+..+-..+. +..++.+. ..|+.
T Consensus 89 gggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal----eRGvp 164 (506)
T PF03141_consen 89 GGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL----ERGVP 164 (506)
T ss_pred CCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh----hcCcc
Confidence 45555555666656666554332 122 35899999999999999998864433333211 11222222 23543
Q ss_pred eEEEEeecCCCCcCcCCCCCcEEEEcCCcCC-CccHHHHHHHHHHHhhcCCCeEEEEEeecc
Q 026274 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYD-ASAFDDLFATITYLLQSSPGSVFITTYHNR 181 (241)
Q Consensus 121 ~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~-~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r 181 (241)
.-+.. .+....+.++..||+|-++.|+-. ...-.-++-.+.++|+ |||.|+.+...-
T Consensus 165 a~~~~--~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR--pGGyfv~S~ppv 222 (506)
T PF03141_consen 165 AMIGV--LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR--PGGYFVLSGPPV 222 (506)
T ss_pred hhhhh--hccccccCCccchhhhhcccccccchhcccceeehhhhhhc--cCceEEecCCcc
Confidence 22111 122224666789999999998843 3333567888999998 778888775543
No 239
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.11 E-value=0.0022 Score=55.02 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHc----------------CC----------
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN----------------KL---------- 119 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n----------------~~---------- 119 (241)
...+|.++||+|||.-+..+..|..-+ +++++|+.+ .-.+.+++-++.. |.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~--~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSE--QNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSH--HHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccH--hhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 445788999999999877665555544 799999996 3444444433221 10
Q ss_pred -c--e-EEEEeecCCCCcCc-----CCCCCcEEEEcCCcCC----CccHHHHHHHHHHHhhcCCCeEEEEEeec------
Q 026274 120 -N--C-RVMGLTWGFLDASI-----FDLNPNIILGADVFYD----ASAFDDLFATITYLLQSSPGSVFITTYHN------ 180 (241)
Q Consensus 120 -~--~-~~~~l~w~~~~~~~-----~~~~fDlIl~~dvly~----~~~~~~ll~~~~~lL~~~~~~~~~~~~~~------ 180 (241)
+ + .+...|..... ++ .+.+||+|+++=|+.. .+.....++.+.++|| |||.+++..-.
T Consensus 131 lR~~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk--pGG~Lil~~~l~~t~Y~ 207 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK--PGGHLILAGVLGSTYYM 207 (256)
T ss_dssp HHHHEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE--EEEEEEEEEESS-SEEE
T ss_pred HHHhhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC--CCcEEEEEEEcCceeEE
Confidence 0 2 12333333221 11 1235999999887754 4567788888899998 55655544111
Q ss_pred ---------cCchhHHHHHHHHcCCEEEEEe
Q 026274 181 ---------RSGHHLIEFLMVKWGLKCVKLV 202 (241)
Q Consensus 181 ---------r~~~~~~~~~~~~~g~~~~~i~ 202 (241)
.-....+...+++.||.+....
T Consensus 208 vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 1123455556789999988874
No 240
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.10 E-value=0.00035 Score=57.61 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=67.0
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+.++||||+|-|-++..++..-.+|.+|+.|. .|...++. .+-++ ...++|.+. +-+||+|.|-.++-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~--tMr~rL~k----k~ynV-l~~~ew~~t-----~~k~dli~clNlLD 180 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSW--TMRDRLKK----KNYNV-LTEIEWLQT-----DVKLDLILCLNLLD 180 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhH--HHHHHHhh----cCCce-eeehhhhhc-----CceeehHHHHHHHH
Confidence 47899999999999988887766899999995 36554443 23222 234566542 34799999988886
Q ss_pred CCccHHHHHHHHHHHhhcCCCeE
Q 026274 151 DASAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 151 ~~~~~~~ll~~~~~lL~~~~~~~ 173 (241)
-..+.-.|++-++..|+|+.|-+
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrv 203 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRV 203 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcE
Confidence 66678899999999999755443
No 241
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.08 E-value=0.0026 Score=54.69 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCc-eEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...|+.|+=+| ---+.|+++|.-|- +|..+|+++ .+++.+.+-++.-+.+ +.+..+|..++..+....+||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDE--Rli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDE--RLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechH--HHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 45788999999 66688888887654 899999997 4899999988888876 777888887776555567999887
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhc-CCCeEEEEEeeccCchh--HHHH-HHHHcCCEEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQS-SPGSVFITTYHNRSGHH--LIEF-LMVKWGLKCVKL 201 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~-~~~~~~~~~~~~r~~~~--~~~~-~~~~~g~~~~~i 201 (241)
.|+.+....+..++..=-..|+. +..|.|.++....+-.. .++. +...+||-.+.+
T Consensus 227 -TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 227 -TDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI 286 (354)
T ss_pred -cCchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence 67777777777777554444542 22256666654433222 2223 457788877776
No 242
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.96 E-value=0.006 Score=51.13 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcC----cCC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDAS----IFD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~----~~~ 137 (241)
...+.+++||||.=||.-++..|.. +.+|++.|+++ +..+...+-++..+. .+++.+..--+...+ ...
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~--~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA--DAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh--HHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCC
Confidence 3467789999999999887777765 56999999996 577777776766665 455555443332221 123
Q ss_pred CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 138 LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+.||.++.- .+-.+.....+.+-+|++ +||++++..
T Consensus 148 ~tfDfaFvD---adK~nY~~y~e~~l~Llr--~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFVD---ADKDNYSNYYERLLRLLR--VGGVIVVDN 183 (237)
T ss_pred CceeEEEEc---cchHHHHHHHHHHHhhcc--cccEEEEec
Confidence 489999853 223344477788888988 678777663
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.95 E-value=0.018 Score=51.08 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=64.4
Q ss_pred CCCeEEEecCCCCHH-HHHHHHh-----CCEEEEEcCCCcHHHHHHHHHHHH-HcCCceEE--EEeecCCCCcCc----C
Q 026274 70 SGANVVELGAGTSLP-GLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRV--MGLTWGFLDASI----F 136 (241)
Q Consensus 70 ~~~~VLElGcGtGl~-sl~la~~-----g~~V~~tD~~~~~~~l~~~~~n~~-~n~~~~~~--~~l~w~~~~~~~----~ 136 (241)
.+..++|||||.|.= .+.|..+ ...++.+|+|. ++|+.+..++. ..-..+.+ ...+..+....+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~--~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR--SELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH--HHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 456899999999953 3333332 34799999995 69988888887 33233444 333333221111 1
Q ss_pred CCCCcEEEEc-CCcCC--CccHHHHHHHHHH-HhhcCCCeEEEEEeec
Q 026274 137 DLNPNIILGA-DVFYD--ASAFDDLFATITY-LLQSSPGSVFITTYHN 180 (241)
Q Consensus 137 ~~~fDlIl~~-dvly~--~~~~~~ll~~~~~-lL~~~~~~~~~~~~~~ 180 (241)
.....+++.- -.+-+ +.....+++.+.+ .|+ +++.++++...
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~--~~d~lLiG~D~ 199 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS--PSDSFLIGLDG 199 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC--CCCEEEEecCC
Confidence 2235566543 35544 4566688888888 886 55666666433
No 244
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.82 E-value=0.049 Score=47.23 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=70.3
Q ss_pred eEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
+|+||-||.|.+++.+.+.|++ |.++|+++ .+++..+.|....-....+..++..+ ....+|+|+++.+.-.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~--~a~~~~~~N~~~~~~~~Di~~~~~~~-----~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK--SAAETYEANFPNKLIEGDITKIDEKD-----FIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH--HHHHHHHHhCCCCCccCccccCchhh-----cCCCCCEEEeCCCChh
Confidence 6999999999999999999985 78899995 58887777764221111222222211 1246999998876532
Q ss_pred C----------ccHHHHHHHHHHHhhcCCCeEEEEEeecc-------CchhHHHHHHHHcCCEEEEE
Q 026274 152 A----------SAFDDLFATITYLLQSSPGSVFITTYHNR-------SGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 152 ~----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r-------~~~~~~~~~~~~~g~~~~~i 201 (241)
. +.-..|+..+.++++.-.-.+|++.--.. .....+...+++.|+.+...
T Consensus 75 fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 75 FSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 1 12233554444555432223444432111 11122333457889887654
No 245
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.072 Score=47.98 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhC----CEEEEEcCCCcHHHHHHHHHHHHHcCCce-EEEEeecCCCCcCcCC-CCCc
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFD-LNPN 141 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~l~w~~~~~~~~~-~~fD 141 (241)
...|.+|||+.++.|-=+..+|++. ..|++.|.++ .=++.++.|++.-|... .+...|-......... .+||
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~--~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP--KRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH--HHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 4567899999999997777777764 3589999996 58889999999888763 3344333222212122 2599
Q ss_pred EEEEc------CCc-------CCC---------ccHHHHHHHHHHHhhcCCCeEEEEE--eeccCchhHHHHHHHHc-CC
Q 026274 142 IILGA------DVF-------YDA---------SAFDDLFATITYLLQSSPGSVFITT--YHNRSGHHLIEFLMVKW-GL 196 (241)
Q Consensus 142 lIl~~------dvl-------y~~---------~~~~~ll~~~~~lL~~~~~~~~~~~--~~~r~~~~~~~~~~~~~-g~ 196 (241)
.|+.- -++ +.. .....+++...+++++ +|.++|.. .....+...+..+++++ ++
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~-GG~LVYSTCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP-GGVLVYSTCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEccCCchhcCHHHHHHHHHhCCCc
Confidence 99842 222 111 1356778888888873 33344433 23344455566666554 77
Q ss_pred EEEEE
Q 026274 197 KCVKL 201 (241)
Q Consensus 197 ~~~~i 201 (241)
+...+
T Consensus 311 ~~~~~ 315 (355)
T COG0144 311 ELEPV 315 (355)
T ss_pred eeecc
Confidence 77665
No 246
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.43 E-value=0.0066 Score=48.99 Aligned_cols=50 Identities=22% Similarity=0.116 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhccCCC--CCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCC
Q 026274 53 PCSVILAEYVWQQRYRF--SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~--~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~ 102 (241)
.|++.|.+.+....... .+.+||||||++|-++.++.+.+ .+|+++|+.+
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 46778888877766222 45899999999999999999988 5899999997
No 247
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.25 E-value=0.07 Score=46.33 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=59.3
Q ss_pred CeEEEecCC-CCHHHHHHHHh---CCEEEEEcCCCcHHHHHHHHHHHH-Hc--CCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE-MN--KLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 72 ~~VLElGcG-tGl~sl~la~~---g~~V~~tD~~~~~~~l~~~~~n~~-~n--~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
++|+=|||| .-+.++.+++. ++.|++.|+++ ++.+.+++-+. .. +..+++...|..+...+ -..||+|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~--~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--l~~~DvV~ 197 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP--EANELARRLVASDLGLSKRMSFITADVLDVTYD--LKEYDVVF 197 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSH--HHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH--HHHHHHHHHHhhcccccCCeEEEecchhccccc--cccCCEEE
Confidence 599999999 66999999975 45899999995 68888887666 22 34567776665433211 13799998
Q ss_pred EcCCcC-CCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 145 GADVFY-DASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 145 ~~dvly-~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+-.+. ..+.-..+++.+.+.++ +|+.+++=
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~--~ga~l~~R 229 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMA--PGARLVVR 229 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS---TTSEEEEE
T ss_pred EhhhcccccchHHHHHHHHHhhCC--CCcEEEEe
Confidence 777776 46688899999999987 66766654
No 248
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.13 E-value=0.083 Score=46.07 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=92.0
Q ss_pred cceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC---CEEEEEcCCCcHHHHHHHHHHHHHcCCc-eE
Q 026274 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CR 122 (241)
Q Consensus 47 ~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~~ 122 (241)
....+++.+-.++..+.. ...+.+|||+.||.|-=+..++... ..|++.|++. .-+..++.|++..|.. +.
T Consensus 65 G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~--~Rl~~l~~~~~r~g~~~v~ 139 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP--KRLKRLKENLKRLGVFNVI 139 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH--HHHHHHHHHHHHTT-SSEE
T ss_pred CcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccCH--HHHHHHHHHHHhcCCceEE
Confidence 335677777666666553 3467789999999998888888763 3899999995 6888899999887774 33
Q ss_pred EEEeecCCCCcCcCCCCCcEEEEcC------CcCCCc----------------cHHHHHHHHHHHh----hcCCCe-EEE
Q 026274 123 VMGLTWGFLDASIFDLNPNIILGAD------VFYDAS----------------AFDDLFATITYLL----QSSPGS-VFI 175 (241)
Q Consensus 123 ~~~l~w~~~~~~~~~~~fDlIl~~d------vly~~~----------------~~~~ll~~~~~lL----~~~~~~-~~~ 175 (241)
+...|............||.|+.-. ++...+ ....+++...+++ + +|| ++|
T Consensus 140 ~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k--~gG~lvY 217 (283)
T PF01189_consen 140 VINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK--PGGRLVY 217 (283)
T ss_dssp EEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE--EEEEEEE
T ss_pred EEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc--CCCeEEE
Confidence 3333332221112233699998422 122111 3456677777787 7 444 455
Q ss_pred EEe--eccCchhHHHHHHHHc-CCEEEEE
Q 026274 176 TTY--HNRSGHHLIEFLMVKW-GLKCVKL 201 (241)
Q Consensus 176 ~~~--~~r~~~~~~~~~~~~~-g~~~~~i 201 (241)
..+ ........++.+++++ .|.+..+
T Consensus 218 sTCS~~~eENE~vV~~fl~~~~~~~l~~~ 246 (283)
T PF01189_consen 218 STCSLSPEENEEVVEKFLKRHPDFELVPI 246 (283)
T ss_dssp EESHHHGGGTHHHHHHHHHHSTSEEEECC
T ss_pred EeccHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 443 3444455666666655 6666554
No 249
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.04 E-value=0.018 Score=51.97 Aligned_cols=102 Identities=22% Similarity=0.375 Sum_probs=69.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHH--HcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCE--MNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~--~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
..+..++++|||.|-+....+..+ +.+++.|+++. ++...-..+.. .++ ...++.-+... .+..+..||.+-+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~-e~~~~~~~~~~~~l~~-k~~~~~~~~~~--~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAY-EAFRANELAKKAYLDN-KCNFVVADFGK--MPFEDNTFDGVRF 184 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHH-HHHHHHHHHHHHHhhh-hcceehhhhhc--CCCCccccCcEEE
Confidence 455679999999999999999875 69999999963 22211111111 111 11222222222 1334568999999
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.|+..|.++...+++.+.+.++ |||+++.
T Consensus 185 ld~~~~~~~~~~~y~Ei~rv~k--pGG~~i~ 213 (364)
T KOG1269|consen 185 LEVVCHAPDLEKVYAEIYRVLK--PGGLFIV 213 (364)
T ss_pred EeecccCCcHHHHHHHHhcccC--CCceEEe
Confidence 9999999999999999999988 6666553
No 250
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.92 E-value=0.012 Score=43.64 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=28.7
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
....+|||||.|++--.|.+.|.+-.++|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 34699999999999999999999999999864
No 251
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.87 E-value=0.0087 Score=49.95 Aligned_cols=81 Identities=11% Similarity=0.031 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCc--CCCCCcEEEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASI--FDLNPNIILG 145 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~--~~~~fDlIl~ 145 (241)
....|+|.-||.|-..+..|..|+.|+++|+++ .-+..++.|++.-|+ .+.+.+.||-+....+ ....+|++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 445799999999999999999999999999996 688999999998887 4778888887643221 1124678887
Q ss_pred cCCcCCC
Q 026274 146 ADVFYDA 152 (241)
Q Consensus 146 ~dvly~~ 152 (241)
+...-.+
T Consensus 172 sppwggp 178 (263)
T KOG2730|consen 172 SPPWGGP 178 (263)
T ss_pred CCCCCCc
Confidence 7766444
No 252
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.85 E-value=0.027 Score=47.49 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHhccCCC--CCCeEEEecCCCCH--HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCC
Q 026274 57 ILAEYVWQQRYRF--SGANVVELGAGTSL--PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFL 131 (241)
Q Consensus 57 ~L~~~l~~~~~~~--~~~~VLElGcGtGl--~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~ 131 (241)
.|++.|.+..... ++.++||+|.|.-- +-+-.-..|.+.+++|+++ ..++.++.++..| ++.-. ..+.-...
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~--~sl~sA~~ii~~N~~l~~~-I~lr~qk~ 139 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDS--QSLSSAKAIISANPGLERA-IRLRRQKD 139 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCH--HHHHHHHHHHHcCcchhhh-eeEEeccC
Confidence 3555555433322 45578999888542 2222333477999999996 5999999999988 44211 11111111
Q ss_pred CcCc------CCCCCcEEEEcCCcCCC
Q 026274 132 DASI------FDLNPNIILGADVFYDA 152 (241)
Q Consensus 132 ~~~~------~~~~fDlIl~~dvly~~ 152 (241)
.... ..+.||..+|++++|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 1111 23589999999999874
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=0.14 Score=41.96 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=58.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhC-C--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC------cCcCC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD------ASIFD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g-~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~------~~~~~ 137 (241)
...++.+|||+||-.|.++..+-+.. . .|.++|+-. .. ...|.. -+...|..+.. +.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---~~-------p~~Ga~-~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---IE-------PPEGAT-IIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---cc-------CCCCcc-cccccccCCHHHHHHHHHhCCC
Confidence 34468899999999999999988863 3 699999863 11 011111 01111332221 12234
Q ss_pred CCCcEEEEcCCcCCC-----ccHHHHHHHHHHHhhc-----CCCeEEEEEeeccCc
Q 026274 138 LNPNIILGADVFYDA-----SAFDDLFATITYLLQS-----SPGSVFITTYHNRSG 183 (241)
Q Consensus 138 ~~fDlIl~~dvly~~-----~~~~~ll~~~~~lL~~-----~~~~~~~~~~~~r~~ 183 (241)
.+.|+|+ ||...+. .++..+++.+..+|.- -|+|.|++-.-.-..
T Consensus 135 r~VdvVl-SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 135 RPVDVVL-SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred CcccEEE-eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 5789888 5666664 3455555544333211 266777766544333
No 254
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.73 E-value=0.48 Score=39.79 Aligned_cols=150 Identities=16% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCcceEEeccHH-HHHHHHHhc---cCCCCCCeEEEecCCCCHHHHHHHHh-CC--EEEEEcCCCcHHHHHHHHHHHHHc
Q 026274 45 EEYGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMN 117 (241)
Q Consensus 45 ~~~g~~~W~~s~-~L~~~l~~~---~~~~~~~~VLElGcGtGl~sl~la~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n 117 (241)
...+.++|.--. .|+..+... ....+|.+||=||+.+|..--.++.. |. .|.+++.++ ...+.+-.-+ ..
T Consensus 44 ~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~--r~~rdL~~la-~~ 120 (229)
T PF01269_consen 44 KKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP--RSMRDLLNLA-KK 120 (229)
T ss_dssp --EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHH-HH
T ss_pred CccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc--hhHHHHHHHh-cc
Confidence 456788997532 455555433 24457899999999999776666664 42 899999996 3554444322 23
Q ss_pred CCceEEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC------chhHHHH-
Q 026274 118 KLNCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS------GHHLIEF- 189 (241)
Q Consensus 118 ~~~~~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~------~~~~~~~- 189 (241)
..++-..--|...+.. ...-+..|+|++ |+- .+...+-++......|+ +||.+++....|. +...+..
T Consensus 121 R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk--~gG~~~i~iKa~siD~t~~p~~vf~~e 196 (229)
T PF01269_consen 121 RPNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLK--PGGHLIISIKARSIDSTADPEEVFAEE 196 (229)
T ss_dssp STTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEE--EEEEEEEEEEHHHH-SSSSHHHHHHHH
T ss_pred CCceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhcc--CCcEEEEEEecCcccCcCCHHHHHHHH
Confidence 3444333333332211 111237888884 444 56778888899999998 5666666654432 2222222
Q ss_pred --HHHHcCCEEEEE
Q 026274 190 --LMVKWGLKCVKL 201 (241)
Q Consensus 190 --~~~~~g~~~~~i 201 (241)
.+++.||+....
T Consensus 197 ~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 197 VKKLKEEGFKPLEQ 210 (229)
T ss_dssp HHHHHCTTCEEEEE
T ss_pred HHHHHHcCCChheE
Confidence 246678998776
No 255
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.72 E-value=0.039 Score=48.64 Aligned_cols=144 Identities=21% Similarity=0.226 Sum_probs=86.8
Q ss_pred eEEEEeecCCCCCCceEEEEeccCcCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEE
Q 026274 20 TVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVT 96 (241)
Q Consensus 20 ~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~ 96 (241)
...+|+..+ ..+-.++.++.+.+-|..+=| +..+-...+......|.+||=+||| .|++.+..|+ .|+ +|+
T Consensus 125 ~la~y~~~~----~dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VV 198 (354)
T KOG0024|consen 125 TLAEYYVHP----ADFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVV 198 (354)
T ss_pred ceEEEEEec----hHheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEE
Confidence 556666664 458888888888777776655 4444444555566789999999999 8988888887 587 899
Q ss_pred EEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE---cCCcCCCccHHHHHHHHHHHhhcCCCeE
Q 026274 97 LTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG---ADVFYDASAFDDLFATITYLLQSSPGSV 173 (241)
Q Consensus 97 ~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~---~dvly~~~~~~~ll~~~~~lL~~~~~~~ 173 (241)
++|+++ .-|+.+++ + |...... .-.....+...+...-.++ .|+.|+-.-.+.-+++.-..++. +|.+
T Consensus 199 i~d~~~--~Rle~Ak~-~---Ga~~~~~--~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~-gGt~ 269 (354)
T KOG0024|consen 199 ITDLVA--NRLELAKK-F---GATVTDP--SSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRS-GGTV 269 (354)
T ss_pred EeecCH--HHHHHHHH-h---CCeEEee--ccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhcc-CCEE
Confidence 999996 47777776 2 2221111 0000000000000111111 44445566677777777777763 4455
Q ss_pred EEEEe
Q 026274 174 FITTY 178 (241)
Q Consensus 174 ~~~~~ 178 (241)
+++.+
T Consensus 270 vlvg~ 274 (354)
T KOG0024|consen 270 VLVGM 274 (354)
T ss_pred EEecc
Confidence 55553
No 256
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.029 Score=50.01 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=60.6
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-----Cc-CC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-----SI-FD 137 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-----~~-~~ 137 (241)
..++.++|||+|+|.|....++-..-. +++..+.|+ ++..+-..+..|-.. ...+|....- ++ ..
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp---~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP---ALRKVGDTLAENVST---EKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH---HHHHHHHHHHhhccc---ccCCCCCCccchhccCCCcc
Confidence 567788999999998865555544422 677788775 555444444444322 2245543221 11 12
Q ss_pred CCCcEEEEcCCcCCCccHHHHH---HHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDASAFDDLF---ATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~~~~~~ll---~~~~~lL~~~~~~~~~~~ 177 (241)
..|++++..|=+-+.....++. +.+..++. +|+.++++
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~--~gg~lViv 224 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLA--PGGHLVIV 224 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhcc--CCCeEEEE
Confidence 3689999888887766655554 44555555 35544443
No 257
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.25 E-value=0.096 Score=47.59 Aligned_cols=99 Identities=22% Similarity=0.211 Sum_probs=65.0
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CC-EEEEEcCCCcHHHHHHHHHHHHHcCCce---EEEEeecCCCCcCcCCCCCcEE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC---RVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~---~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+.+|||-=||||+=|+-.++. +. +|++-|+++ ++++.+++|++.|++.. ++...|...... .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~--~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISP--EAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-H--HHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCH--HHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEE
Confidence 3458999999999999999987 33 899999995 79999999999999865 333333332211 134589998
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
=. |++ ....++++..-+.++ .||++.++
T Consensus 126 Dl-DPf---GSp~pfldsA~~~v~--~gGll~vT 153 (377)
T PF02005_consen 126 DL-DPF---GSPAPFLDSALQAVK--DGGLLCVT 153 (377)
T ss_dssp EE---S---S--HHHHHHHHHHEE--EEEEEEEE
T ss_pred Ee-CCC---CCccHhHHHHHHHhh--cCCEEEEe
Confidence 53 222 356788888888887 45665554
No 258
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.18 E-value=0.93 Score=38.00 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCC-CCCcEEEEc
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGA 146 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~-~~fDlIl~~ 146 (241)
++.++.|+||-=|.+..+|-+.+. .+++.|+++ ..++.+.+|+..+++.-++ ..+-++...+... ..+|+|+-+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~--gpl~~a~~~v~~~~l~~~i-~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVP--GPLESAIRNVKKNNLSERI-DVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeeccc--CHHHHHHHHHHhcCCcceE-EEeccCCccccCccCCcCEEEEe
Confidence 455699999999999999999764 799999997 4899999999999875332 2233343333332 368887754
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.+= -..+..+++.-..-|+ +-..+++. +.-+.. .++.++..++|....
T Consensus 93 GMG--G~lI~~ILee~~~~l~--~~~rlILQ-Pn~~~~-~LR~~L~~~~~~I~~ 140 (226)
T COG2384 93 GMG--GTLIREILEEGKEKLK--GVERLILQ-PNIHTY-ELREWLSANSYEIKA 140 (226)
T ss_pred CCc--HHHHHHHHHHhhhhhc--CcceEEEC-CCCCHH-HHHHHHHhCCceeee
Confidence 321 1245555555555553 11233433 222233 344455667766543
No 259
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.00 E-value=0.096 Score=44.34 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=46.0
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcH-HHHHHHHHHHHHcC-C------ceEEEEeecCCCCcCcCCCCCcEE
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-EVLKNMRRVCEMNK-L------NCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~-~~l~~~~~n~~~n~-~------~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+|||.-||.|.=++.+|..|++|++++.|+.- .+++..-+++..+. . ++++...+..+... ..+.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCCEE
Confidence 389999999999999999999999999999620 12222222333222 1 35555555444433 345689999
Q ss_pred EEcCCcCCCccHH----HHHHHHHHHh
Q 026274 144 LGADVFYDASAFD----DLFATITYLL 166 (241)
Q Consensus 144 l~~dvly~~~~~~----~ll~~~~~lL 166 (241)
.. |++|-...-. .=++.++.+.
T Consensus 156 Y~-DPMFp~~~ksa~vkk~m~~lr~L~ 181 (234)
T PF04445_consen 156 YF-DPMFPERKKSALVKKEMRVLRDLA 181 (234)
T ss_dssp EE---S-----TTTT-SHHHHHHHHHH
T ss_pred EE-CCCCCCcccccccccchHHHHHhh
Confidence 96 7777543322 2345555554
No 260
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.94 E-value=0.047 Score=49.73 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=67.2
Q ss_pred eEEEEeccC---cCCcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHH
Q 026274 35 FSIAIIENM---KEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 35 ~~i~i~~~~---~~~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~ 111 (241)
+...+++.- ..++|-.-|.+-+..-+--... -...|..|-|+-||.|-.++-+++.|+.|++-|.++ ++++.++
T Consensus 212 ~vtevre~~~~Fk~DfskVYWnsRL~~Eherlsg-~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp--esik~Lk 288 (495)
T KOG2078|consen 212 LVTEVREGGERFKFDFSKVYWNSRLSHEHERLSG-LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP--ESIKWLK 288 (495)
T ss_pred eEEEEecCCeeEEEecceEEeeccchhHHHHHhh-ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCH--HHHHHHH
Confidence 444444443 2367778899544433332222 233577899999999999999999999999999995 7999999
Q ss_pred HHHHHcCCc---eEEEEeecCCC
Q 026274 112 RVCEMNKLN---CRVMGLTWGFL 131 (241)
Q Consensus 112 ~n~~~n~~~---~~~~~l~w~~~ 131 (241)
.|+..|.+. +.+..+|..++
T Consensus 289 ~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 289 ANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred HhccccccchhheeeecccHHHH
Confidence 999999874 44555554443
No 261
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.80 E-value=0.19 Score=46.65 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=61.4
Q ss_pred CeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc-
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF- 149 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl- 149 (241)
-++|.+|||.--++..+-+-|. .|+.+|+|+. .+......|+ .......+...+.... ...+++||+|+.-..+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V-~V~~m~~~~~-~~~~~~~~~~~d~~~l--~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSV-VVAAMQVRNA-KERPEMQMVEMDMDQL--VFEDESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHH-HHHHHHhccc-cCCcceEEEEecchhc--cCCCcceeEEEecCccc
Confidence 4899999999999999999888 7999999973 2333445554 2333344444444332 3345689998854332
Q ss_pred ---------CCCccHHHHHHHHHHHhhc
Q 026274 150 ---------YDASAFDDLFATITYLLQS 168 (241)
Q Consensus 150 ---------y~~~~~~~ll~~~~~lL~~ 168 (241)
++......-+..+++++++
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~ 153 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAP 153 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhcc
Confidence 2233455667888999984
No 262
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.79 E-value=0.6 Score=40.64 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=45.6
Q ss_pred eEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcC
Q 026274 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (241)
Q Consensus 73 ~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly 150 (241)
+++||-||.|.+++.+.+.|. -|.++|+++ .+.+..+.|.. .....|..+......+..+|+++++.+.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~--~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP--DACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH--HHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH--HHHHhhhhccc------ccccccccccccccccccceEEEeccCCc
Confidence 699999999999999999997 589999995 57777777776 22333333322111111599999887653
No 263
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.70 E-value=0.0041 Score=45.58 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=31.1
Q ss_pred EEecCCCCHHHHHHHHh----C-CEEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 75 VELGAGTSLPGLVAAKV----G-SNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 75 LElGcGtGl~sl~la~~----g-~~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
||+|+..|..++.+++. + .+++++|..+ . .+..+++++..+. ++++...+..+........++|+|+. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~--~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i-D 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP--G-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI-D 76 (106)
T ss_dssp --------------------------EEEESS---------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE-E
T ss_pred CccccccccccccccccccccccCCEEEEECCC--c-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE-C
Confidence 79999999888777663 2 2799999996 1 3334444443332 34444433322212222358898884 3
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.-+..+....-++.+...|+ +++++++.
T Consensus 77 g~H~~~~~~~dl~~~~~~l~--~ggviv~d 104 (106)
T PF13578_consen 77 GDHSYEAVLRDLENALPRLA--PGGVIVFD 104 (106)
T ss_dssp S---HHHHHHHHHHHGGGEE--EEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCeEEEEe
Confidence 32223344445555566665 66766653
No 264
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.68 E-value=0.43 Score=43.04 Aligned_cols=126 Identities=12% Similarity=0.059 Sum_probs=75.1
Q ss_pred CCeEEEecCCCCHHHHHHHHhC-C-EEEEEcCCCcHHHHHHHHHHHHH---cC-----CceEEEEeecCCCCcCcCCCCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCEM---NK-----LNCRVMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g-~-~V~~tD~~~~~~~l~~~~~n~~~---n~-----~~~~~~~l~w~~~~~~~~~~~f 140 (241)
-.+||=||-|-|+....+.+.- . +++.+|.+| +|++.+++|.-. |+ .++++..-|..++... ....|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP--~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~-a~~~f 366 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDP--RMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT-AADMF 366 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCH--HHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-hcccc
Confidence 3579999999999999999874 3 899999995 799999876433 32 2344444443333222 23489
Q ss_pred cEEEEcCCcCCCcc-----HHHHHHHHHHHhhcCCCeEEEEE----eeccCchhHHHHHHHHcCCEEEEE
Q 026274 141 NIILGADVFYDASA-----FDDLFATITYLLQSSPGSVFITT----YHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 141 DlIl~~dvly~~~~-----~~~ll~~~~~lL~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
|.||--=.=-..+. -.++...+++.|+ ++|++++- |..+.....+..-.++.|+.+...
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~--e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA--ETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC--cCceEEEecCCCccCCceeeeehhHHHhCcceeeee
Confidence 99884211111112 2345556667776 55655543 222323333344467888776543
No 265
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.37 E-value=0.19 Score=44.76 Aligned_cols=95 Identities=11% Similarity=0.002 Sum_probs=62.1
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~ 151 (241)
...+|+|.|.|.+.-.+.+.-.+|-+++.+. |.+++.+.. .. .+ +.... ++..... .+-|+|+.-=|+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p~v~~~a~~-~~-~g--V~~v~---gdmfq~~--P~~daI~mkWiLhd 248 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-PFVLAAAPY-LA-PG--VEHVA---GDMFQDT--PKGDAIWMKWILHD 248 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCH-HHHHhhhhh-hc-CC--cceec---ccccccC--CCcCeEEEEeeccc
Confidence 5789999999966555555655788888886 344444433 32 33 32222 3333332 25779999999987
Q ss_pred --CccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 152 --ASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 152 --~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.++...+++.++..|++ +|.+++..
T Consensus 249 wtDedcvkiLknC~~sL~~-~GkIiv~E 275 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPP-GGKIIVVE 275 (342)
T ss_pred CChHHHHHHHHHHHHhCCC-CCEEEEEe
Confidence 56788999999999974 44455544
No 266
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.15 E-value=0.68 Score=40.87 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=28.2
Q ss_pred CCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
..+||==|||.|.++..+|..|.++-+-+.|-
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy 182 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSY 182 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHH
Confidence 45799999999999999999999888887773
No 267
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.66 E-value=0.14 Score=45.90 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=62.1
Q ss_pred CCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
..+|+|-=||||+=|+-.|.. +. +|++-|+|+ ++.+.+++|++.| +.+..+..-|........ ...||+|= -|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp--~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~ID-iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISP--KAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVID-ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCH--HHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEe-cC
Confidence 678999999999999999985 55 899999995 7999999999999 445444433332221111 24788873 12
Q ss_pred CcCCCccHHHHHHHHHHHhh
Q 026274 148 VFYDASAFDDLFATITYLLQ 167 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~ 167 (241)
++ ....|+++...+..+
T Consensus 129 PF---GSPaPFlDaA~~s~~ 145 (380)
T COG1867 129 PF---GSPAPFLDAALRSVR 145 (380)
T ss_pred CC---CCCchHHHHHHHHhh
Confidence 22 245566666666665
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.48 E-value=0.39 Score=41.04 Aligned_cols=104 Identities=10% Similarity=0.008 Sum_probs=60.9
Q ss_pred CCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
..+|+|||||.=-+++..... ++.+++.|++. .+++.+..-...-+.+.++...|.-. .......|+.+.-=+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~--~~ve~l~~~l~~l~~~~~~~v~Dl~~---~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDS--QLVEFLNAFLAVLGVPHDARVRDLLS---DPPKEPADLALLLKT 180 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBH--HHHHHHHHHHHHTT-CEEEEEE-TTT---SHTTSEESEEEEET-
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCH--HHHHHHHHHHHhhCCCcceeEeeeec---cCCCCCcchhhHHHH
Confidence 568999999988777755544 46999999995 69999988888778777766554432 233456899886544
Q ss_pred cCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 149 FYDASA--FDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 149 ly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
+.-.+. -...++.+..+ ..-.++++++.|+.
T Consensus 181 lp~le~q~~g~g~~ll~~~----~~~~~vVSfPtrSL 213 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDAL----RSPHVVVSFPTRSL 213 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHS----CESEEEEEEES---
T ss_pred HHHHHHHhcchHHHHHHHh----CCCeEEEecccccc
Confidence 432111 11222233333 23466777776554
No 269
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.45 E-value=2.3 Score=39.01 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=82.3
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCce-EEEEeecCCCCcCcCCCCCcEE
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~-~~~~l~w~~~~~~~~~~~fDlI 143 (241)
+.+|.||||+.|-.|-=..++|.+ . ..|++.|.+. .-+..++.|+..-|.+- -+..+|-.++....+..+||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~--~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNE--NRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccch--HHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 347889999999988655555554 2 2799999996 48889999999888753 3344555444333444589988
Q ss_pred E----EcC--CcCCCc----------------cHHHHHHHHHHHhhcCCCeEEEEEeec--cCchhHHHHHHHHc-CCEE
Q 026274 144 L----GAD--VFYDAS----------------AFDDLFATITYLLQSSPGSVFITTYHN--RSGHHLIEFLMVKW-GLKC 198 (241)
Q Consensus 144 l----~~d--vly~~~----------------~~~~ll~~~~~lL~~~~~~~~~~~~~~--r~~~~~~~~~~~~~-g~~~ 198 (241)
+ ||- +++-+. ....|+....+++++ +|.++|..+.. ......+.++++++ .++.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~-GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL 395 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA-GGVLVYSTCSITVEENEAVVDYALKKRPEVKL 395 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC-CcEEEEEeeecchhhhHHHHHHHHHhCCceEe
Confidence 7 333 444432 456677777778873 33345544322 22344556666666 5555
Q ss_pred EEE
Q 026274 199 VKL 201 (241)
Q Consensus 199 ~~i 201 (241)
...
T Consensus 396 ~p~ 398 (460)
T KOG1122|consen 396 VPT 398 (460)
T ss_pred ccc
Confidence 443
No 270
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.30 E-value=1 Score=42.66 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=34.4
Q ss_pred CCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHH
Q 026274 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
...+.+|+=+||| .|+.++..|+ +|+.|+++|.++ +.++.++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~--~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP--EVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH
Confidence 3468899999999 7888888887 599999999995 46655554
No 271
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.90 E-value=2.7 Score=37.14 Aligned_cols=120 Identities=17% Similarity=0.063 Sum_probs=65.8
Q ss_pred EEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCcCCC
Q 026274 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDA 152 (241)
Q Consensus 74 VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvly~~ 152 (241)
|+||-||.|-+++.+.+.|.+ +.+.|+++ .+.+..+.|.... +...|..+...... ..+|+++++.+.-..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~--~a~~ty~~N~~~~-----~~~~Di~~~~~~~~-~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK--YAQKTYEANFGNK-----VPFGDITKISPSDI-PDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH--HHHHHHHHhCCCC-----CCccChhhhhhhhC-CCcCEEEecCCCccc
Confidence 689999999999999999986 56799995 5777777765421 11122222211111 258999887654321
Q ss_pred ----------ccHHHHHHHHHHHhhcCCCeEEEEEeecc-----C--chhHHHHHHHHcCCEEEEE
Q 026274 153 ----------SAFDDLFATITYLLQSSPGSVFITTYHNR-----S--GHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 153 ----------~~~~~ll~~~~~lL~~~~~~~~~~~~~~r-----~--~~~~~~~~~~~~g~~~~~i 201 (241)
+.-..|+..+.++++.-.-.+|++.--.. . ....+...++..|+.+...
T Consensus 73 S~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 73 SIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred chhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE
Confidence 12224555555555432223444442211 1 1122223356789887553
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.74 E-value=0.85 Score=40.80 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=56.9
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC-cCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-ASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~-~~~~~~~fDlI 143 (241)
...+|++|+=.|+| .|..++.+|+ +|++|++.|.++ +-++.+++ -+.+. ..++.+.. .+...+.||+|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~--~K~e~a~~----lGAd~---~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE--EKLELAKK----LGADH---VINSSDSDALEAVKEIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh--HHHHHHHH----hCCcE---EEEcCCchhhHHhHhhCcEE
Confidence 44578999999998 4466777787 799999999996 35555554 22222 22333111 11111248888
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
+-.-. ...+....++|++ +|.+++++..
T Consensus 234 i~tv~-------~~~~~~~l~~l~~-~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG-------PATLEPSLKALRR-GGTLVLVGLP 261 (339)
T ss_pred EECCC-------hhhHHHHHHHHhc-CCEEEEECCC
Confidence 85322 4455555566663 4556666655
No 273
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.53 E-value=4.3 Score=32.43 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHH-HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 54 ~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~l-a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
++..|++.+.+.. ..+.+|+=|||=+-...+.- ...+.++.+.|++.. ...-+.+ .+.-.|...+.
T Consensus 11 T~~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R----------F~~~~~~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 11 TAEFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR----------FEQFGGD-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch----------HHhcCCc-ceEECCCCChh
Confidence 4455666665532 24578999998776555554 122458999999962 2222333 45566665543
Q ss_pred c--CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 133 A--SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 133 ~--~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
. ....++||+|++-+++...+.......+++.+++ +++.++++... .....+.+.+|++....
T Consensus 78 ~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k--~~~kii~~Tg~----~~~~~~~~ll~~~~~~f 142 (162)
T PF10237_consen 78 ELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLK--PGGKIILCTGE----EMEELIKKLLGLRMCDF 142 (162)
T ss_pred hhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhC--ccceEEEecHH----HHHHHHHHHhCeeEEeE
Confidence 2 1224689999988888777777888899999987 35555555322 22233334446665543
No 274
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.48 E-value=0.7 Score=39.39 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCHHHHHHHHh----------CCEEEEEcCCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNR 103 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~----------g~~V~~tD~~~~ 103 (241)
.-+|+|+|+|+|.++.-+.+. ..+++.++.|+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 468999999999776665553 127999999983
No 275
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.46 E-value=0.5 Score=38.69 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=39.6
Q ss_pred eccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHH
Q 026274 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 52 W~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~ 111 (241)
-+-...|.+.+..... .+|..|||-=||+|..++++.++|.+.+++|+++ +..+.++
T Consensus 174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~--~y~~~a~ 230 (231)
T PF01555_consen 174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE--EYCEIAK 230 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH--HHHHHHH
T ss_pred ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH--HHHHHhc
Confidence 3444555566554332 3578999999999999999999999999999995 5776654
No 276
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.40 E-value=0.081 Score=46.21 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=55.7
Q ss_pred eEEeccHHHHHHHH--Hhcc----CCCCCCeEEEecCCCCHHHH-HHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCc
Q 026274 49 LFVWPCSVILAEYV--WQQR----YRFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (241)
Q Consensus 49 ~~~W~~s~~L~~~l--~~~~----~~~~~~~VLElGcGtGl~sl-~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (241)
...|++.+.+-.+= .... -...+..|.||-+|.|...+ ++-++|| .|.+.|.+| ..++.+++|++.|+..
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp--~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP--WSVEALRRNAEANNVM 244 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH--HHHHHHHHHHHhcchH
Confidence 36899988886661 1111 11245679999999999999 8889998 799999995 7999999999999875
Q ss_pred e
Q 026274 121 C 121 (241)
Q Consensus 121 ~ 121 (241)
.
T Consensus 245 ~ 245 (351)
T KOG1227|consen 245 D 245 (351)
T ss_pred H
Confidence 3
No 277
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.28 E-value=0.47 Score=36.25 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCC
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~ 102 (241)
.+++|+.... ...+|+|+|-|-= -.+..|+..|..|++||+++
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 4778887533 2349999999955 67888999999999999996
No 278
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.27 E-value=0.86 Score=40.21 Aligned_cols=66 Identities=5% Similarity=-0.123 Sum_probs=45.7
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEee
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (241)
+-+.......++..++|--+|.|-=+.++++. ..+|++.|.++ ++++.+++.....+.++.+...+
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~--~Al~~ak~~L~~~~~R~~~i~~n 77 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP--QAIAFAKERLSDFEGRVVLIHDN 77 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHhhcCCcEEEEeCC
Confidence 33333333346678999999999888888875 25899999995 79988888765443344444333
No 279
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=91.71 E-value=0.31 Score=42.26 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=68.6
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEE
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (241)
.+-...||....+.+.. ..+..++|.|||.| ..+.. -...+++.|++. .++.-+++ .+.. ...
T Consensus 27 ~tr~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~--~l~~~ak~----~~~~-~~~ 90 (293)
T KOG1331|consen 27 ATRAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCT--GLLGGAKR----SGGD-NVC 90 (293)
T ss_pred ccccCccHHHHHHHhcc------CCcceeeecccCCcccCcCC---Ccceeeecchhh--hhcccccc----CCCc-eee
Confidence 45567898665554442 23678999999999 22221 123689999985 34433332 2221 111
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCCcCCCc---cHHHHHHHHHHHhhcCCCeEEEE
Q 026274 125 GLTWGFLDASIFDLNPNIILGADVFYDAS---AFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dvly~~~---~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
.-|.-+ .+..+.+||.+++.-+++|.. --..+++.+.+.+++++...+++
T Consensus 91 ~ad~l~--~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 91 RADALK--LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhc--CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 112211 234456899999999999964 45667788888888665555553
No 280
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.59 E-value=0.9 Score=39.26 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=60.4
Q ss_pred CeEEEecCC---CCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCC-ceEEEEeecCCCCc--------CcCC
Q 026274 72 ANVVELGAG---TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA--------SIFD 137 (241)
Q Consensus 72 ~~VLElGcG---tGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~-~~~~~~l~w~~~~~--------~~~~ 137 (241)
...|||||| .|-+-..+.+. .++|+-+|.++ -++...+.-...+.. ...+...|..+... ...+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 469999999 34443333332 56999999995 578777776655432 35666777665431 1111
Q ss_pred -CCCcEEEEcCCcCCC---ccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 138 -LNPNIILGADVFYDA---SAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 138 -~~fDlIl~~dvly~~---~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
..+=-++...++++. ++...++.++...|. +|..+.+++....
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la--pGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA--PGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS---TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC--CCceEEEEecCCC
Confidence 123357778888774 468888888888886 7788888876544
No 281
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.47 E-value=7.4 Score=32.44 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=81.6
Q ss_pred eEEecc--HHHHHHHHHhc--cCCCCCCeEEEecCCCCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHHHHHH-cCCce
Q 026274 49 LFVWPC--SVILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEM-NKLNC 121 (241)
Q Consensus 49 ~~~W~~--s~~L~~~l~~~--~~~~~~~~VLElGcGtGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~n~~~-n~~~~ 121 (241)
.+.|+. |.+.|..+... ....+|.+||=||+-+|..--..+. .|. .+.+++.++. +...+-.-++. +++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R--~~reLl~~a~~R~Ni-- 126 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPR--PMRELLDVAEKRPNI-- 126 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecch--hHHHHHHHHHhCCCc--
Confidence 578876 34444444432 2445789999999999976656665 353 7999999973 44433333322 222
Q ss_pred EEEEeecCCCCc-CcCCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC------chhHHHH---HH
Q 026274 122 RVMGLTWGFLDA-SIFDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS------GHHLIEF---LM 191 (241)
Q Consensus 122 ~~~~l~w~~~~~-~~~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~------~~~~~~~---~~ 191 (241)
-..-.|...+.. ...-+..|+|.. |+ -.+...+-+.......|+++ |..+++...|. +...+.. .+
T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~--G~~~i~iKArSIdvT~dp~~vf~~ev~kL 202 (231)
T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKG--GYVVIAIKARSIDVTADPEEVFKDEVEKL 202 (231)
T ss_pred eeeecccCCcHHhhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccC--CeEEEEEEeecccccCCHHHHHHHHHHHH
Confidence 111112221100 001124555542 22 12456667778889999844 33333333332 2223332 24
Q ss_pred HHcCCEEEEEecCCCCCCccccc
Q 026274 192 VKWGLKCVKLVDGFSFLPHYKAR 214 (241)
Q Consensus 192 ~~~g~~~~~i~~~~~~~p~~~~~ 214 (241)
.+.+|+..... ...|+.+.+
T Consensus 203 ~~~~f~i~e~~---~LePye~DH 222 (231)
T COG1889 203 EEGGFEILEVV---DLEPYEKDH 222 (231)
T ss_pred HhcCceeeEEe---ccCCcccce
Confidence 67788887763 334555443
No 282
>PRK11524 putative methyltransferase; Provisional
Probab=91.42 E-value=0.92 Score=39.45 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=39.9
Q ss_pred CCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH
Q 026274 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (241)
.+|..|||-=||+|..++++.++|-+.+|+|+++ +..+.+++.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~--~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS--EYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH--HHHHHHHHHHH
Confidence 4678999999999999999999999999999995 68888877664
No 283
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.36 E-value=0.74 Score=41.39 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=30.3
Q ss_pred HHHHHHHHhcc---CCCCCCeEEEecCCCCHHHHHHHH-h---------CCEEEEEcCCC
Q 026274 56 VILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAK-V---------GSNVTLTDDSN 102 (241)
Q Consensus 56 ~~L~~~l~~~~---~~~~~~~VLElGcGtGl~sl~la~-~---------g~~V~~tD~~~ 102 (241)
..++.|+.+.- .......++|||+|+|.+.--+.+ . ..++..++.|+
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 34555554422 222345799999999966554443 3 34899999996
No 284
>PRK13699 putative methylase; Provisional
Probab=91.29 E-value=1.1 Score=37.68 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
+|..|||-=||+|..++++.++|.+.+++|+++ +..+.+.+.++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~--~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE--QYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCH--HHHHHHHHHHHH
Confidence 677899999999999999999999999999995 577766665543
No 285
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=91.22 E-value=0.3 Score=43.59 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHH-------HHHHHHHHcCCc---eEEEEeecCCCCcCcCC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-------NMRRVCEMNKLN---CRVMGLTWGFLDASIFD 137 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~-------~~~~n~~~n~~~---~~~~~l~w~~~~~~~~~ 137 (241)
...|+-|.|==.|||-+-+.+|..|+.|+|+||+-. ++. +++.|.+.-+.. +.+...|..+..... .
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr--~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs-n 282 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYR--TVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS-N 282 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchh--eeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh-c
Confidence 446888999999999999999999999999999963 553 455566655542 233444444332211 3
Q ss_pred CCCcEEEEcCCcCC
Q 026274 138 LNPNIILGADVFYD 151 (241)
Q Consensus 138 ~~fDlIl~~dvly~ 151 (241)
..||.|+| |+-|-
T Consensus 283 ~~fDaIvc-DPPYG 295 (421)
T KOG2671|consen 283 LKFDAIVC-DPPYG 295 (421)
T ss_pred ceeeEEEe-CCCcc
Confidence 47999995 44444
No 286
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.96 E-value=1.9 Score=32.46 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~ 136 (241)
+++|+... ....+|.|+|.|-= -++-.+++.|..|++||+++. ++. .+ +++..-|..++
T Consensus 4 ~a~~iAre---~~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---------~a~-~g--~~~v~DDitnP----- 63 (129)
T COG1255 4 VAEYIARE---NARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---------TAP-EG--LRFVVDDITNP----- 63 (129)
T ss_pred HHHHHHHH---hcCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---------cCc-cc--ceEEEccCCCc-----
Confidence 44555432 22348999999965 568888999999999999961 122 23 33444333322
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
..-+=-++|.+|.....+.+.+.+.++-+.=+-.+++.+
T Consensus 64 --~~~iY~~A~lIYSiRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 64 --NISIYEGADLIYSIRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred --cHHHhhCccceeecCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 233344667777777777777777777654333345544
No 287
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.85 E-value=0.91 Score=40.36 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.5
Q ss_pred CeEEEecCCCCHHHHHHHHhCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCC-CCcEEEEcCCc
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGADVF 149 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~-~fDlIl~~dvl 149 (241)
.+++||-||.|-+++.+...|.+ +.+.|+++ .+++..+.|... ..+...|........... .+|+|++..+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~--~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP--PAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH--HHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 57999999999999999999985 88999995 577666666543 122222222221111122 78999988776
Q ss_pred CC
Q 026274 150 YD 151 (241)
Q Consensus 150 y~ 151 (241)
-.
T Consensus 78 Q~ 79 (328)
T COG0270 78 QD 79 (328)
T ss_pred cc
Confidence 44
No 288
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.64 E-value=2.3 Score=33.62 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=55.6
Q ss_pred CeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCC--ceEEEEee-cCCCCcCcCCCCCcEEEEcC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLT-WGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~--~~~~~~l~-w~~~~~~~~~~~fDlIl~~d 147 (241)
.+.+|||+|-|.+-+.++++|. .-+++++++ =++...+-.+-..+. ..++..-| |.- .+.+-.+-+|++++
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNp--wLVaysrl~a~R~g~~k~trf~RkdlwK~---dl~dy~~vviFgae 148 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNP--WLVAYSRLHAWRAGCAKSTRFRRKDLWKV---DLRDYRNVVIFGAE 148 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccH--HHHHHHHHHHHHHhcccchhhhhhhhhhc---cccccceEEEeehH
Confidence 3699999999999999999996 899999996 355555554443333 33333222 332 12222455566543
Q ss_pred CcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 148 VFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 148 vly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.....|-..+..-+. .++.++.+
T Consensus 149 -----s~m~dLe~KL~~E~p--~nt~vvac 171 (199)
T KOG4058|consen 149 -----SVMPDLEDKLRTELP--ANTRVVAC 171 (199)
T ss_pred -----HHHhhhHHHHHhhCc--CCCeEEEE
Confidence 333445555554442 34555554
No 289
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.76 E-value=6.3 Score=34.34 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEecCCCCHH---HHHHHHhCC-EEEEEcCCCc-HHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 55 SVILAEYVWQQRYRFSGANVVELGAGTSLP---GLVAAKVGS-NVTLTDDSNR-IEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 55 s~~L~~~l~~~~~~~~~~~VLElGcGtGl~---sl~la~~g~-~V~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
..-+...|.......+++++|=+|+| |.. ...+++.|+ +|++++.++. .+-.+.+.+.+...+..+.+...+|.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~ 188 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLN 188 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechh
Confidence 34444555444334578899999998 633 223456687 5999998841 01233333333333333334445665
Q ss_pred CCCc-CcCCCCCcEEEEcCCcCCCc--cHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 130 FLDA-SIFDLNPNIILGADVFYDAS--AFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 130 ~~~~-~~~~~~fDlIl~~dvly~~~--~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
+... ...-..+|+|+.+-++-..+ +..++.. ...|. +...++=+.|.++.+ .+...+++.|..+..
T Consensus 189 ~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~--~~~l~-~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 189 DTEKLKAEIASSDILVNATLVGMKPNDGETNIKD--TSVFR-KDLVVADTVYNPKKT--KLLEDAEAAGCKTVG 257 (289)
T ss_pred hhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCc--HHhcC-CCCEEEEecCCCCCC--HHHHHHHHCCCeeeC
Confidence 3211 00112579999877664322 1111101 13343 122333355655543 344556778876654
No 290
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.63 E-value=1.9 Score=37.82 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCCCCCeEEEecCCCC---HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC------c--
Q 026274 67 YRFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------I-- 135 (241)
Q Consensus 67 ~~~~~~~VLElGcGtG---l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~------~-- 135 (241)
...+|..||==|.|.| .+++.+|++|+++++.|++.. -.+...+.++.+| .+.....|..+..+- .
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3457889999999988 578889999999999999973 4444444444445 566666666554320 0
Q ss_pred CCCCCcEEEEcC
Q 026274 136 FDLNPNIILGAD 147 (241)
Q Consensus 136 ~~~~fDlIl~~d 147 (241)
.-+..|+++.+-
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 113678887654
No 291
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=89.61 E-value=16 Score=33.29 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=73.5
Q ss_pred cceEEeccHH-HHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE-EE
Q 026274 47 YGLFVWPCSV-ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VM 124 (241)
Q Consensus 47 ~g~~~W~~s~-~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-~~ 124 (241)
.-++.|+++- .|.+++.... ..+ +||=++=.-|.++..++..+.. ..+|-- -.-..++.|++.|++... +.
T Consensus 23 ~~l~awdaade~ll~~~~~~~--~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~---~~~~~~~~n~~~n~~~~~~~~ 95 (378)
T PRK15001 23 NPLQAWEAADEYLLQQLDDTE--IRG-PVLILNDAFGALSCALAEHKPY-SIGDSY---ISELATRENLRLNGIDESSVK 95 (378)
T ss_pred CcccccccHHHHHHHHHhhcc--cCC-CEEEEcCchhHHHHHHHhCCCC-eeehHH---HHHHHHHHHHHHcCCCcccce
Confidence 4589999885 3333433321 122 7999999999999999965543 234443 244577889999988644 33
Q ss_pred EeecCCCCcCcCCCCCcEEEEcCCcCCCcc---HHHHHHHHHHHhhcCCCeEEEEEeeccCc
Q 026274 125 GLTWGFLDASIFDLNPNIILGADVFYDASA---FDDLFATITYLLQSSPGSVFITTYHNRSG 183 (241)
Q Consensus 125 ~l~w~~~~~~~~~~~fDlIl~~dvly~~~~---~~~ll~~~~~lL~~~~~~~~~~~~~~r~~ 183 (241)
.++-. ++ ....+|+|+. |.+.. ++..+..+...+. +++.++++...+..
T Consensus 96 ~~~~~---~~-~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~--~~~~ii~g~~~k~i 147 (378)
T PRK15001 96 FLDST---AD-YPQQPGVVLI----KVPKTLALLEQQLRALRKVVT--SDTRIIAGAKARDI 147 (378)
T ss_pred eeccc---cc-ccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCC--CCCEEEEEEecCCC
Confidence 33222 22 3346999884 55554 4444555556665 67777776655544
No 292
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.53 E-value=1.2 Score=41.63 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=73.6
Q ss_pred CeEEEecCCCCHHHHHHHHhCC---EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCC
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dv 148 (241)
.+|+|..+|.|-++.+|..... +|+-++... .|. .+-..|+-- .-.||.+... ..+..||+|-++.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~n---tL~----vIydRGLIG--~yhDWCE~fs-TYPRTYDLlHA~~l 436 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPN---TLP----VIYDRGLIG--VYHDWCEAFS-TYPRTYDLLHADGL 436 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCC---cch----hhhhcccch--hccchhhccC-CCCcchhheehhhh
Confidence 4799999999977766665543 444443322 222 222234321 2357887643 35679999998877
Q ss_pred cCC---CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 149 FYD---ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 149 ly~---~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
+-. .-.++.++-.+.++|+ |+|.+++-...- .-..++.+++...+++...
T Consensus 437 fs~~~~rC~~~~illEmDRILR--P~G~~iiRD~~~-vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILR--PGGWVIIRDTVD-VLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcC--CCceEEEeccHH-HHHHHHHHHHhCcceEEEE
Confidence 633 3468899999999998 677777642221 1123445677788887766
No 293
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.50 E-value=1.8 Score=38.73 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCCeEEEecCC-CCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEee--cCCCCcCcC-CCCCcEE
Q 026274 70 SGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT--WGFLDASIF-DLNPNII 143 (241)
Q Consensus 70 ~~~~VLElGcG-tGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~--w~~~~~~~~-~~~fDlI 143 (241)
.+.+|+=+||| .|++++.+++. |+ +|+++|.++ +=++.+++-. +....+.... ......... ...+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~--~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP--ERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHHHHHhC---CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 44489999999 89998888875 66 899999996 4566555411 1111110000 000000111 1258887
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccC
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRS 182 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~ 182 (241)
+=+- -....+....+++++ +|.+.+++.....
T Consensus 243 ie~~------G~~~~~~~ai~~~r~-gG~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAV------GSPPALDQALEALRP-GGTVVVVGVYGGE 274 (350)
T ss_pred EECC------CCHHHHHHHHHHhcC-CCEEEEEeccCCc
Confidence 7322 244566677777763 4567777765544
No 294
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.28 E-value=11 Score=32.31 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=90.5
Q ss_pred EEeccH---HHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe
Q 026274 50 FVWPCS---VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (241)
Q Consensus 50 ~~W~~s---~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (241)
++|.+. -.|..|+..-.....+.+ |..-||+-+++-.+.+..-++.++++.+. =...++.|.. .+-++++...
T Consensus 66 RL~~a~~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~--D~~~L~~~f~-~d~~vrv~~~ 141 (279)
T COG2961 66 RLWQAADLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPS--DAPLLRNNFA-GDRRVRVLRG 141 (279)
T ss_pred HHHhcCCchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCcc--HHHHHHHHhC-CCcceEEEec
Confidence 556543 345666655444334433 89999999988888887779999999974 4456666665 4456666666
Q ss_pred e-cCCCCcCcCC-CCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHH--HHHcCC
Q 026274 127 T-WGFLDASIFD-LNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFL--MVKWGL 196 (241)
Q Consensus 127 ~-w~~~~~~~~~-~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~--~~~~g~ 196 (241)
| |......+.+ ++--+|+.-.++....+.+.+++++.+.++.=++|++.+=|+.........++ +++.|.
T Consensus 142 DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 142 DGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred CcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCc
Confidence 5 3322222222 24557777667667789999999999999876666555444444333333333 455554
No 295
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.98 E-value=9.4 Score=31.84 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=48.1
Q ss_pred CCCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
+++++||=.|+ +|-+|..+++ .|++|++++.++ +.++.+...++..+.++.+...|..+... ...
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 56889999996 4444555444 588999999985 34455555555445556666666655321 001
Q ss_pred CCCCcEEEEcCCcC
Q 026274 137 DLNPNIILGADVFY 150 (241)
Q Consensus 137 ~~~fDlIl~~dvly 150 (241)
-.+.|+++.+--..
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 13578888665443
No 296
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.85 E-value=6.4 Score=35.92 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCeEEEecCCCCHHHHHHHHh------------C-----CEEEEEcCCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKV------------G-----SNVTLTDDSNR 103 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~------------g-----~~V~~tD~~~~ 103 (241)
..+|+|+|||+|..++.+... + .+|...|...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 457999999999777665332 1 37999999864
No 297
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.52 E-value=4.2 Score=37.12 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=45.6
Q ss_pred CeEEEecCC-CC-HHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCCCCCcEEEEc
Q 026274 72 ANVVELGAG-TS-LPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIILGA 146 (241)
Q Consensus 72 ~~VLElGcG-tG-l~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~~fDlIl~~ 146 (241)
++||=|||| .| .++..||+.+ .+|++.|.+. +- +++-....+.++++..+|..+... ... ..+|+||.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~--~~---~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK--EK---CARIAELIGGKVEALQVDAADVDALVALI-KDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH--HH---HHHHHhhccccceeEEecccChHHHHHHH-hcCCEEEEe
Confidence 479999996 44 3344456667 5999999995 23 333333334477788888776531 111 256888876
Q ss_pred CCcCC
Q 026274 147 DVFYD 151 (241)
Q Consensus 147 dvly~ 151 (241)
-.-|+
T Consensus 76 ~p~~~ 80 (389)
T COG1748 76 APPFV 80 (389)
T ss_pred CCchh
Confidence 55544
No 298
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=88.51 E-value=9.8 Score=31.70 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=49.5
Q ss_pred CCCCCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC-----
Q 026274 68 RFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
..+++++|=.|++.|+ |.. +++.|++|++++.++ +.++.+...++..+..+.+...|..+... ...
T Consensus 8 ~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 8 SLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNA--ATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3578899999976554 443 344589999999985 45555555555555566677777765431 000
Q ss_pred -CCCCcEEEEcCCc
Q 026274 137 -DLNPNIILGADVF 149 (241)
Q Consensus 137 -~~~fDlIl~~dvl 149 (241)
-.++|.++.+-..
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 1367888866443
No 299
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=88.37 E-value=2.8 Score=34.79 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=51.4
Q ss_pred CCCCeEEEecCCCCHHHHHHHHh------CCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCc--CcC--
Q 026274 69 FSGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA--SIF-- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~~------g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~--~~~-- 136 (241)
.+.+.|+|+|.=.|--.++.|.. .++|+++|++.. ..-+..++.+ ...+++.+.+..+... ...
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir----~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR----PHNRKAIESHPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT----T--S-GGGG----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc----hhchHHHhhccccCceEEEECCCCCHHHHHHHHHh
Confidence 46679999999998777766653 248999999632 1111112211 2467777777655431 111
Q ss_pred -CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEE
Q 026274 137 -DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFIT 176 (241)
Q Consensus 137 -~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~ 176 (241)
...--+++.-|.=+...+.-.-++....+++ +|..+++
T Consensus 107 ~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~--~G~Y~IV 145 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTHEHVLAELEAYAPLVS--PGSYLIV 145 (206)
T ss_dssp ----SSEEEEESS----SSHHHHHHHHHHT----TT-EEEE
T ss_pred hccCCceEEEECCCccHHHHHHHHHHhCccCC--CCCEEEE
Confidence 1122345567777777888888888999987 5555553
No 300
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=88.32 E-value=3 Score=34.78 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=58.5
Q ss_pred CeEEEecCCCCHHHHHHHHhCC--EEEEEcCCCcHHHHHHHHHHHHHcC-------C-ceEEEEeecCCCCcCcCC---C
Q 026274 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNK-------L-NCRVMGLTWGFLDASIFD---L 138 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~-------~-~~~~~~l~w~~~~~~~~~---~ 138 (241)
-.+.|||||-|-+-+.++-+-. -+++.+|-. .+-+.+++.+++-. . ++.+....-.......+. -
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~--KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD--KVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhH--HHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4589999999988888887744 588888875 47777776665432 1 233333222222111111 1
Q ss_pred CCcEEEEcCCcCCCc------cHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 139 NPNIILGADVFYDAS------AFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 139 ~fDlIl~~dvly~~~------~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+-+..+--|.=|... .-..++....-+|+ .+|.++.....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~--~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLR--EGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhh--cCceEEEEeeH
Confidence 334444444433321 22356677777777 56666655444
No 301
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=88.30 E-value=12 Score=32.22 Aligned_cols=81 Identities=17% Similarity=0.115 Sum_probs=52.6
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCC---ceEEEEeecCCCCc-------
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA------- 133 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~---~~~~~~l~w~~~~~------- 133 (241)
..+.++.+|-=|+..|+ ++..+++.|++|+.++.++ +.++.+.......+. ++.....|..+...
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~ 81 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE--ERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEF 81 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence 35688999999999884 4677888999999999996 566655554444333 34444555443221
Q ss_pred --CcCCCCCcEEEEcCCc
Q 026274 134 --SIFDLNPNIILGADVF 149 (241)
Q Consensus 134 --~~~~~~fDlIl~~dvl 149 (241)
..+..+.|+++.+.-.
T Consensus 82 ~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 82 AVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHhCCCCCEEEEcCCc
Confidence 1123578988866544
No 302
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.89 E-value=2.7 Score=34.63 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~ 101 (241)
...+..+|+=+||| .| -++..+++.|. ++++.|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34567899999999 45 56777888888 79999998
No 303
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.48 E-value=2.7 Score=39.13 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=45.3
Q ss_pred CCCCCCeEEEecCC-CCH-HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl-~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...++++|+=+|+| +|+ ++..|++.|.+|+++|.++. +....+.+.++..++.+.. +.... ....+|+|+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~~-----~~~~~--~~~~~D~Vv 83 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVRL-----GPGPT--LPEDTDLVV 83 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEEE-----CCCcc--ccCCCCEEE
Confidence 34567899999998 664 34455567999999997762 3444444445555654421 11101 123589888
Q ss_pred EcCCc
Q 026274 145 GADVF 149 (241)
Q Consensus 145 ~~dvl 149 (241)
.+.-+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 77554
No 304
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=87.39 E-value=16 Score=31.71 Aligned_cols=132 Identities=19% Similarity=0.048 Sum_probs=66.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC
Q 026274 56 VILAEYVWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (241)
Q Consensus 56 ~~L~~~l~~~~~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~ 132 (241)
.-+..-|.......++++|+=|||| .| .+...+++.|+ +|+.+|.+. +-.+.+.+.+........+ ..|.+..
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~--~~~~~~~ 187 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP--ARAAALADELNARFPAARA--TAGSDLA 187 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHHHhhCCCeEE--EeccchH
Confidence 3344444333334567899999999 33 34445556787 899999985 3334343333222222222 2233211
Q ss_pred cCcCCCCCcEEEEcCCcCCCccH-HHHHHHHHHHhhcCCCe-EEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 133 ASIFDLNPNIILGADVFYDASAF-DDLFATITYLLQSSPGS-VFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~~-~~ll~~~~~lL~~~~~~-~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.. -..+|+||.+-++--.+.. .++- ...++ ++. ++=+.|.+..+ .+...+++.|..+..
T Consensus 188 ~~--~~~aDiVInaTp~Gm~~~~~~~~~---~~~l~--~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 188 AA--LAAADGLVHATPTGMAKHPGLPLP---AELLR--PGLWVADIVYFPLET--ELLRAARALGCRTLD 248 (284)
T ss_pred hh--hCCCCEEEECCcCCCCCCCCCCCC---HHHcC--CCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence 11 1358999987655421111 0111 13344 333 33355655443 344556778876654
No 305
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=86.91 E-value=2.1 Score=38.87 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCCeEEEecCCCCHHHHHHHH-hCCEEEEEcCCC
Q 026274 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~g~~V~~tD~~~ 102 (241)
.-..|+|+|+|.|-++-+++- .|.+|.++|-+.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 346799999999999999886 477999999995
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.75 E-value=10 Score=33.38 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHHH
Q 026274 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
..++.+||=.||| .|+.++.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHHH
Confidence 3468889988886 5556666666 377 699999985 45555443
No 307
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.72 E-value=21 Score=33.48 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=34.1
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHH
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~ 114 (241)
..+++||-||.|-+++.+-+.|. -|.++|+++ .+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~--~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK--HAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH--HHHHHHHHHc
Confidence 45899999999999999988888 478899995 4666666664
No 308
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.60 E-value=1.6 Score=37.58 Aligned_cols=43 Identities=23% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhC-------CEEEEEcCCC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN 102 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g-------~~V~~tD~~~ 102 (241)
..|....-..++..++|+|||.|.+|-++++.- ..++++|...
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 344443333456689999999999999999863 3799999975
No 309
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.44 E-value=2.2 Score=38.12 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....+.+||=.|+| .|++.+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~--~r~~~a~ 233 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE--DKLALAR 233 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHHH
Confidence 34567888888876 4555555555 488 699999985 3444443
No 310
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.05 E-value=11 Score=31.60 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=43.5
Q ss_pred CeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--C----c---CCCC
Q 026274 72 ANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--S----I---FDLN 139 (241)
Q Consensus 72 ~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~----~---~~~~ 139 (241)
+++|=.|++.|+ ++..+++.|++|++++.++ +-++.+..... +..+.+...|..+... . . ...+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINE--AGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 467888876542 2333445588999999885 35555444332 4456677777765431 0 0 0246
Q ss_pred CcEEEEcCCc
Q 026274 140 PNIILGADVF 149 (241)
Q Consensus 140 fDlIl~~dvl 149 (241)
+|+++.+--+
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 7988865443
No 311
>PRK07326 short chain dehydrogenase; Provisional
Probab=85.86 E-value=13 Score=30.45 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=43.2
Q ss_pred CCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++||=.|+ +|.+|..++ ..|++|++++.++ +-++.+.+.+... ..+.+...|..+... ... -
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQ--KELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCH--HHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678999996 555555544 3488999999885 3444444333322 345555666554321 001 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
..+|+|+.+.-.
T Consensus 81 ~~~d~vi~~ag~ 92 (237)
T PRK07326 81 GGLDVLIANAGV 92 (237)
T ss_pred CCCCEEEECCCC
Confidence 268888866443
No 312
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=85.41 E-value=12 Score=32.20 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCCCCeEEEecCCCCHHHHH----HHHhCC--EEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCcCcCCC
Q 026274 67 YRFSGANVVELGAGTSLPGLV----AAKVGS--NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~----la~~g~--~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~~~~~~ 138 (241)
....+...+|||+|+-.-.-. ++..|. ..+.+|++. ..|....+.+... ++.+.....+...........
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a--~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSA--SILRATATAILREYPGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccH--HHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCC
Confidence 344578999999997744333 344454 899999995 4665444433333 334433333333222222221
Q ss_pred CCcE-EEEcCCc--CCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCch
Q 026274 139 NPNI-ILGADVF--YDASAFDDLFATITYLLQSSPGSVFITTYHNRSGH 184 (241)
Q Consensus 139 ~fDl-Il~~dvl--y~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~ 184 (241)
+--+ ++..-.+ +.+..-..++..+...++ ||-.|+++...+...
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~--pGd~~LlGvDl~k~A 199 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALR--PGDYFLLGVDLRKPA 199 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCC--CcceEEEeccccCHH
Confidence 2222 2222333 446677888899999987 677788776555543
No 313
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.34 E-value=19 Score=31.78 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=49.6
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------~ 137 (241)
.++++||=.|++.|+- ...+++.|++|++++.++ +-++.+.+.+...+.++.+...|..+...- .. -
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE--EGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4677899999766532 233455689999999885 456656555655566666667776654310 00 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+++.+--+
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 368998866543
No 314
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.59 E-value=8.8 Score=36.38 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCC-----------cC-
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-----------AS- 134 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~-----------~~- 134 (241)
..+.+|+=+||| .|+..+.+++ +|+.|+++|.++ +.++.++. -+. ++..++..+.. .+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~--~rle~a~~----lGa--~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP--EVKEQVQS----MGA--EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH----cCC--eEEeccccccccccccceeecCHHH
Confidence 356799999999 6777776666 589999999995 35444443 222 22222211100 00
Q ss_pred -------cC--CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhc
Q 026274 135 -------IF--DLNPNIILGADVFYDASAFDDLFATITYLLQS 168 (241)
Q Consensus 135 -------~~--~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~ 168 (241)
.. -..+|+|+.+-.+--.+...-+.+...+.+++
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 00 13689998776554433333355666777774
No 315
>PLN02740 Alcohol dehydrogenase-like
Probab=84.59 E-value=2.4 Score=38.21 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
...+|.+||=.||| .|+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~--~r~~~a~ 240 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP--EKFEKGK 240 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHH
Confidence 44568899999876 4555555555 477 699999985 3555554
No 316
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=84.44 E-value=6.2 Score=37.18 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=65.4
Q ss_pred CCCeEEEecCCCCHHHHHHHH-hC-----CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc-Cc-----CC
Q 026274 70 SGANVVELGAGTSLPGLVAAK-VG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI-----FD 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~-~g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~-~~-----~~ 137 (241)
...+|.|--||+|-+-+.+++ .+ ....|.++++ .....++.|.-.++++. ......++... +. ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~--~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND--TTYRLAKMNLILHGIEG-DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH--HHHHHHHHHHHHhCCCc-cccccccccccCCcccccCCc
Confidence 445899999999954444333 22 3588999985 68999999999998864 11222222111 11 22
Q ss_pred CCCcEEEEcCCcCCC-------------------------ccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 138 LNPNIILGADVFYDA-------------------------SAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 138 ~~fDlIl~~dvly~~-------------------------~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.+||+|++++++.-. ......+..+...|++++.+.++++
T Consensus 263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 479999998887510 1225566667777765444555555
No 317
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=84.39 E-value=5.2 Score=33.64 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-C---CEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-G---SNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g---~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
.+-++-|=.||.|.+--.+.-+ + ..|+++|+++ ++|+.+++|..+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~--~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE--DALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H--HHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH--HHHHHHHHhhhh
Confidence 3457999999999554444433 2 2799999995 799999999865
No 318
>PRK06181 short chain dehydrogenase; Provisional
Probab=84.19 E-value=17 Score=30.30 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=42.8
Q ss_pred CeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCC
Q 026274 72 ANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLN 139 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~ 139 (241)
++||=.|+.. .+|..+ ++.|++|++++.++ .-.+.+...+...+..+.+...|..+... ... -..
T Consensus 2 ~~vlVtGasg-~iG~~la~~l~~~g~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGASE-GIGRALAVRLARAGAQLVLAARNE--TRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecCCc-HHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4677777544 444444 44588999999885 34444444444444456666666655321 000 125
Q ss_pred CcEEEEcCCc
Q 026274 140 PNIILGADVF 149 (241)
Q Consensus 140 fDlIl~~dvl 149 (241)
.|+|+.+-..
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7888866544
No 319
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=83.95 E-value=28 Score=30.20 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..++++||=|||| +| .+...+++.|+ +|+.++.+. +-.+.+.+..... . .+..+.+.+.... .-..+|+||
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~--~ka~~La~~~~~~-~--~~~~~~~~~~~~~-~~~~~DiVI 195 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP--DKLSRLVDLGVQV-G--VITRLEGDSGGLA-IEKAAEVLV 195 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHhhhc-C--cceeccchhhhhh-cccCCCEEE
Confidence 3578899999999 44 33444566786 799998884 2223332222211 1 1122222111011 113689999
Q ss_pred EcCCcCCCccHHHHHHHHHHHh---hcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLL---QSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL---~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.+=.+-.+.....+......++ .++...++=+.|.++.+ .+....++.|..+..
T Consensus 196 naTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 196 STVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT--PLVAIVSAAGWRVIS 252 (282)
T ss_pred ECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC--HHHHHHHHCCCEEEC
Confidence 8866654433322211111111 01122233355655544 344556778876654
No 320
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=83.82 E-value=12 Score=33.52 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=40.5
Q ss_pred CCCeEEEecCCCCHHHHHHHHh------------C------CEEEEEcCCCcHH---HHHHHHHHHHH--cCCceEEEEe
Q 026274 70 SGANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNRIE---VLKNMRRVCEM--NKLNCRVMGL 126 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~------------g------~~V~~tD~~~~~~---~l~~~~~n~~~--n~~~~~~~~l 126 (241)
+.-+|+|+||.+|-.++.+... + .+|+..|+..+ + +...+-.+... ...++ +...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N-DFn~lF~~l~~~~~~~~~~~~~-f~~g 93 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN-DFNTLFKSLPSFQQSLKKFRNY-FVSG 93 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS--HHHHHHCHHHHHHHHHHTTSE-EEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc-cHHHHHHhChhhhhccCCCceE-EEEe
Confidence 3458999999999888876553 2 28999999875 2 33333332211 11222 2222
Q ss_pred ecCCCCcCcC-CCCCcEEEEcCCcCCC
Q 026274 127 TWGFLDASIF-DLNPNIILGADVFYDA 152 (241)
Q Consensus 127 ~w~~~~~~~~-~~~fDlIl~~dvly~~ 152 (241)
--+.+...++ +.+.|+++++-.+++.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-
T ss_pred cCchhhhccCCCCceEEEEEechhhhc
Confidence 2233333333 3478888877777663
No 321
>PRK13699 putative methylase; Provisional
Probab=83.75 E-value=10 Score=31.89 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=38.0
Q ss_pred CcCCCCCcEEEEcCCcCC---------------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEE
Q 026274 134 SIFDLNPNIILGADVFYD---------------ASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKC 198 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~---------------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 198 (241)
.+.++++|+|+..++... .+.....++.+.++|++ |+.+++-...+.... +...+++.||.+
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKp--gg~l~if~~~~~~~~-~~~al~~~GF~l 91 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKK--DALMVSFYGWNRVDR-FMAAWKNAGFSV 91 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCC--CCEEEEEeccccHHH-HHHHHHHCCCEE
Confidence 445678899987665531 02245778889999984 454443222222222 233457889987
Q ss_pred EEE
Q 026274 199 VKL 201 (241)
Q Consensus 199 ~~i 201 (241)
...
T Consensus 92 ~~~ 94 (227)
T PRK13699 92 VGH 94 (227)
T ss_pred eeE
Confidence 653
No 322
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.58 E-value=16 Score=30.65 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=44.4
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ +...+++.|++|+++|.++ +-++.+.+.. +..+.+...|..+... ... -
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 467889999976552 3334555699999999985 2333322211 3345666777765431 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--.
T Consensus 79 g~id~lv~~ag~ 90 (261)
T PRK08265 79 GRVDILVNLACT 90 (261)
T ss_pred CCCCEEEECCCC
Confidence 367988866443
No 323
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=83.30 E-value=12 Score=29.24 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=43.3
Q ss_pred EEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCC-CCCcEEEEcC---------CcCCCccHHHHHHH
Q 026274 94 NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFD-LNPNIILGAD---------VFYDASAFDDLFAT 161 (241)
Q Consensus 94 ~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~-~~fDlIl~~d---------vly~~~~~~~ll~~ 161 (241)
+|.+.|+-+ +++++.++..+.++.. +++..-.-... ....+ .++|+++.+= ++=.++.--..++.
T Consensus 1 kVyaFDIQ~--~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQE--EAIENTRERLEEAGLEDRVTLILDSHENL-DEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-H--HHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHH--HHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 689999995 7999999999888763 44443222222 12223 3788887431 11111233445566
Q ss_pred HHHHhhcCCCeE-EEEEeeccCc
Q 026274 162 ITYLLQSSPGSV-FITTYHNRSG 183 (241)
Q Consensus 162 ~~~lL~~~~~~~-~~~~~~~r~~ 183 (241)
+..+|+ +||+ .++.|....+
T Consensus 78 al~lL~--~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 78 ALELLK--PGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHHEE--EEEEEEEEE--STCH
T ss_pred HHHhhc--cCCEEEEEEeCCCCC
Confidence 666776 4554 5555554443
No 324
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=82.89 E-value=1.5 Score=37.79 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhc-----cCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 54 CSVILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 54 ~s~~L~~~l~~~-----~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
+-..|..|+... .+..+|+.+.||=+|||++|-.+.+.|..|++-|+..
T Consensus 6 sK~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 6 SKYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred hHHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 345677787754 2456788999999999999999999999999999864
No 325
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.89 E-value=16 Score=31.52 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=46.0
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
..+++++|=.|++.|+ ++..+++.|++|++++.++ +-++.+.+.+.. +..+.....|..+... ...
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE--AELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3578899999977663 3444555689999999985 344444333321 2333344466654321 000
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.++|+++.+--+
T Consensus 83 ~g~id~vI~nAG~ 95 (296)
T PRK05872 83 FGGIDVVVANAGI 95 (296)
T ss_pred cCCCCEEEECCCc
Confidence 1368999876554
No 326
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.84 E-value=7 Score=32.62 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=49.4
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++ +.++.+...+...+.++.+...|..+... ... -
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 468899999987663 3344555689999999985 45555555555445555566666654321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 368998876544
No 327
>PRK05650 short chain dehydrogenase; Provisional
Probab=82.49 E-value=16 Score=30.83 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=43.1
Q ss_pred eEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCCCc
Q 026274 73 NVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLNPN 141 (241)
Q Consensus 73 ~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~fD 141 (241)
+||=.|+..|+ ++..+++.|++|++++.+. +-++.+...+...+.++.+...|+.+... ... -.++|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNE--EGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 57777765543 2333445588999999885 34444444444445566666777765321 001 13688
Q ss_pred EEEEcCCc
Q 026274 142 IILGADVF 149 (241)
Q Consensus 142 lIl~~dvl 149 (241)
+++.+--+
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 88866443
No 328
>PRK07454 short chain dehydrogenase; Provisional
Probab=82.46 E-value=25 Score=28.89 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
+.+++|=.|+ +|.+|..++ +.|++|++++.++ +-.+.+...+...+.++.+...|..+... ... -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQ--DALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888885 455555544 4588999999985 33444444344334456666677665421 001 1
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
.+.|+++.+.-..
T Consensus 82 ~~id~lv~~ag~~ 94 (241)
T PRK07454 82 GCPDVLINNAGMA 94 (241)
T ss_pred CCCCEEEECCCcc
Confidence 3589998766543
No 329
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=82.34 E-value=1.9 Score=36.42 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCC
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~ 102 (241)
|+.+|..........+++|.=||+|.+++.+.+.+..|++-|+++
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 556666543322678999999999999999988888999999995
No 330
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=82.24 E-value=24 Score=28.18 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=72.9
Q ss_pred cCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHH---HHHHHHHH---cCCceEEEEeecCCCCcCc--CCCCCcEEEEc
Q 026274 78 GAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLK---NMRRVCEM---NKLNCRVMGLTWGFLDASI--FDLNPNIILGA 146 (241)
Q Consensus 78 GcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~---~~~~n~~~---n~~~~~~~~l~w~~~~~~~--~~~~fDlIl~~ 146 (241)
|=|-=-.|+.+++. + .++++|-++...++++ .+..|++. .+..+ ....|..+..... ...+||.|+-+
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V-~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTV-LHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcc-ccCCCCCcccccccccCCcCCEEEEe
Confidence 44444566777765 3 3899999987433443 23344432 23322 1234443333222 34589999855
Q ss_pred CCcCC-------------CccHHHHHHHHHHHhhcCCCeEEEEEeeccCc--hhHHHHHHHHcCCEEEEE
Q 026274 147 DVFYD-------------ASAFDDLFATITYLLQSSPGSVFITTYHNRSG--HHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 147 dvly~-------------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~--~~~~~~~~~~~g~~~~~i 201 (241)
-+--- ...+..+++....+|+ ++|.|.++.....+ ...+..++++.||.+...
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~--~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLK--PDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence 33222 2357778888899987 56777777655533 456778889999999876
No 331
>PRK09291 short chain dehydrogenase; Provisional
Probab=82.09 E-value=8.9 Score=31.88 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=46.4
Q ss_pred CCeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCCCCCcEEE
Q 026274 71 GANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIIL 144 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~~fDlIl 144 (241)
++++|=.|++.| +|..+ ++.|++|++++.++ .-++.++......+..+.+...|+.+... .....+.|+++
T Consensus 2 ~~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 2 SKTILITGAGSG-FGREVALRLARKGHNVIAGVQIA--PQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 357888888655 34443 44588999999875 34444444444445567777888876432 11223789888
Q ss_pred EcCC
Q 026274 145 GADV 148 (241)
Q Consensus 145 ~~dv 148 (241)
.+--
T Consensus 79 ~~ag 82 (257)
T PRK09291 79 NNAG 82 (257)
T ss_pred ECCC
Confidence 7643
No 332
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.97 E-value=6.3 Score=34.28 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=46.7
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH-hCCE-EEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEE
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~-~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~ 145 (241)
.++.+||=+||| .|++++.+|+ .|++ |+++|.++ +-++.+... . + .+-.+ . ....+|+|+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~--~rl~~a~~~----~----~--i~~~~---~-~~~g~Dvvid 206 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP--RRRDGATGY----E----V--LDPEK---D-PRRDYRAIYD 206 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHhhhhc----c----c--cChhh---c-cCCCCCEEEE
Confidence 356788888887 5666666665 4875 77788874 344433321 1 0 11000 0 1235777763
Q ss_pred cCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 146 ADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 146 ~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
+ ..-...++...+++++ +|.+++++.
T Consensus 207 ~------~G~~~~~~~~~~~l~~-~G~iv~~G~ 232 (308)
T TIGR01202 207 A------SGDPSLIDTLVRRLAK-GGEIVLAGF 232 (308)
T ss_pred C------CCCHHHHHHHHHhhhc-CcEEEEEee
Confidence 2 2233456666677773 344455554
No 333
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=81.96 E-value=29 Score=30.46 Aligned_cols=92 Identities=10% Similarity=-0.095 Sum_probs=50.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...+|.+||=.|+| .|...+.+|+ .|++|++++.++ +-++.+++ .|....+ +-.+. ....+|+++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~--~~~~~a~~----~Ga~~vi---~~~~~----~~~~~d~~i 228 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA--AARRLALA----LGAASAG---GAYDT----PPEPLDAAI 228 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHH----hCCceec---ccccc----CcccceEEE
Confidence 34468899999975 4444455555 488999999986 33444433 3332211 10110 123578776
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEe
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTY 178 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~ 178 (241)
-.+.. ...+....+++++ +|.+++++.
T Consensus 229 ~~~~~------~~~~~~~~~~l~~-~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDR-GGVLAVAGI 255 (329)
T ss_pred ECCCc------HHHHHHHHHhhCC-CcEEEEEec
Confidence 55443 2356666677763 344555554
No 334
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.88 E-value=2.9 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=27.9
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~ 102 (241)
....|++|+=+||| .|......++ .|++|+++|.++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 34689999999999 6755444444 589999999996
No 335
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=81.57 E-value=24 Score=30.73 Aligned_cols=133 Identities=11% Similarity=-0.015 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCCCCeEEEecCCCCHH--HHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc
Q 026274 57 ILAEYVWQQRYRFSGANVVELGAGTSLP--GLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 57 ~L~~~l~~~~~~~~~~~VLElGcGtGl~--sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~ 133 (241)
-+.+-|.......++++||=||||-..- ...+++.|+ +++..+.+. +-.+.+.+.+........+...++....
T Consensus 113 Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~--~ka~~La~~~~~~~~~~~~~~~~~~~~~- 189 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT--SRAQALADVINNAVGREAVVGVDARGIE- 189 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH--HHHHHHHHHHhhccCcceEEecCHhHHH-
Confidence 3444444333345688999999994433 333455676 799999885 2223332222211111111122222111
Q ss_pred CcCCCCCcEEEEcCCcCCCccH-HHHHHHHHHHhhcCCCeE-EEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 134 SIFDLNPNIILGADVFYDASAF-DDLFATITYLLQSSPGSV-FITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 134 ~~~~~~fDlIl~~dvly~~~~~-~~ll~~~~~lL~~~~~~~-~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
. ....+|+|+-+-++-..+.. .++ . . ..+. ++.+ +=+.|.++.+ .+...+++.|..+..
T Consensus 190 ~-~~~~~divINaTp~Gm~~~~~~~~-~-~-~~l~--~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 190 D-VIAAADGVVNATPMGMPAHPGTAF-D-V-SCLT--KDHWVGDVVYMPIET--ELLKAARALGCETLD 250 (283)
T ss_pred H-HHhhcCEEEEcCCCCCCCCCCCCC-C-H-HHcC--CCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence 0 11368999977665322111 111 1 1 2343 3332 2244555443 344556778876654
No 336
>PRK06114 short chain dehydrogenase; Provisional
Probab=81.43 E-value=30 Score=28.80 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=47.1
Q ss_pred CCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.+++.+|=.|++.| +|..++ +.|++|++++.++. ..++.+.+.+...+.++.+...|..+... ...
T Consensus 6 ~~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 6 LDGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTD-DGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788998886655 444444 45889999998752 23444444444444455556666654321 000
Q ss_pred CCCCcEEEEcCCcC
Q 026274 137 DLNPNIILGADVFY 150 (241)
Q Consensus 137 ~~~fDlIl~~dvly 150 (241)
-.+.|+++.+--+.
T Consensus 84 ~g~id~li~~ag~~ 97 (254)
T PRK06114 84 LGALTLAVNAAGIA 97 (254)
T ss_pred cCCCCEEEECCCCC
Confidence 13579888776554
No 337
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.19 E-value=4.6 Score=36.11 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=28.6
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
...++++||=+||| .| .++..|++.|. +++++|.+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34577899999999 45 56777888887 899999974
No 338
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=80.86 E-value=28 Score=30.32 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=64.1
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHH--HHHhCC-EEEEEcCCCc-HHHHHHHHHHHHHcCCceEEEEeecCCCC-
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLV--AAKVGS-NVTLTDDSNR-IEVLKNMRRVCEMNKLNCRVMGLTWGFLD- 132 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~--la~~g~-~V~~tD~~~~-~~~l~~~~~n~~~n~~~~~~~~l~w~~~~- 132 (241)
+.+-|.......+++++|=||||-..-++. ++..|+ +++.++.++. .+-.+.+.+.+.... ...+....|.+..
T Consensus 111 f~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~~~~~~~~~ 189 (288)
T PRK12749 111 HIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQA 189 (288)
T ss_pred HHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEEechhhhhh
Confidence 333443333345788999999994433333 455676 8999999841 012222222222111 1111223332210
Q ss_pred cCcCCCCCcEEEEcCCcCCCccH-HHHHHHHHHHhhcCCCeEEE-EEeeccCchhHHHHHHHHcCCEEEE
Q 026274 133 ASIFDLNPNIILGADVFYDASAF-DDLFATITYLLQSSPGSVFI-TTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 133 ~~~~~~~fDlIl~~dvly~~~~~-~~ll~~~~~lL~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.......+|+|+.+-++=..+.. ..+... ...++ ++.+++ +.|.+..+ .+...+++.|..+..
T Consensus 190 l~~~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~--~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 190 FAEALASADILTNGTKVGMKPLENESLVND-ISLLH--PGLLVTECVYNPHMT--KLLQQAQQAGCKTID 254 (288)
T ss_pred hhhhcccCCEEEECCCCCCCCCCCCCCCCc-HHHCC--CCCEEEEecCCCccC--HHHHHHHHCCCeEEC
Confidence 00011368999987766322211 101100 12343 344333 55555433 344455777876654
No 339
>PRK08862 short chain dehydrogenase; Provisional
Probab=80.75 E-value=8.9 Score=31.84 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=48.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc-------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI-------F 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~-------~ 136 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++ +.++.+.+.+...+..+.....|..+... .. +
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999999885 4555666799999999885 46655555455445444445555443321 00 1
Q ss_pred CCCCcEEEEcC
Q 026274 137 DLNPNIILGAD 147 (241)
Q Consensus 137 ~~~fDlIl~~d 147 (241)
..++|+++.+-
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 12689888764
No 340
>PRK07904 short chain dehydrogenase; Provisional
Probab=80.74 E-value=24 Score=29.61 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=44.4
Q ss_pred CCCeEEEecCCCCHHHHHH----HHhC-CEEEEEcCCCcHHHHHHHHHHHHHcC-CceEEEEeecCCCCc------CcC-
Q 026274 70 SGANVVELGAGTSLPGLVA----AKVG-SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA------SIF- 136 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~l----a~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~-~~~~~~~l~w~~~~~------~~~- 136 (241)
.+++||=.||+.|+ |..+ ++.| ++|++++.++. ..++.+.+.+...+ .++.+..+|..+... ...
T Consensus 7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~-~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDD-PRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcc-hhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 56789999997663 3333 3444 79999998863 22444444444433 356777777765431 000
Q ss_pred CCCCcEEEEc
Q 026274 137 DLNPNIILGA 146 (241)
Q Consensus 137 ~~~fDlIl~~ 146 (241)
....|+++.+
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 1368977754
No 341
>PRK11524 putative methyltransferase; Provisional
Probab=80.35 E-value=3.1 Score=36.12 Aligned_cols=44 Identities=7% Similarity=0.050 Sum_probs=28.7
Q ss_pred cCCCCCcEEEEcCCcCCC----------------ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 135 IFDLNPNIILGADVFYDA----------------SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 135 ~~~~~fDlIl~~dvly~~----------------~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
..+++||+|+++.+++.. ..+..++..+.++|+ ++|.+++.+..
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK--~~G~i~i~~~~ 82 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK--KQGTMYIMNST 82 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC--CCcEEEEEcCc
Confidence 345689999987776421 123578899999998 55555554333
No 342
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.23 E-value=9.6 Score=29.07 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEE
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlI 143 (241)
..+++++||=+|+| +| .+...++..|+ +|+.+.-+. +-.+.+.+.. .+..+. ...|.+... .-..+|+|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~--~ra~~l~~~~--~~~~~~--~~~~~~~~~--~~~~~Div 79 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP--ERAEALAEEF--GGVNIE--AIPLEDLEE--ALQEADIV 79 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH--HHHHHHHHHH--TGCSEE--EEEGGGHCH--HHHTESEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHc--Cccccc--eeeHHHHHH--HHhhCCeE
Confidence 35689999999998 33 44555666787 599999984 3333333333 223333 345554321 12379999
Q ss_pred EEcCCcCCC
Q 026274 144 LGADVFYDA 152 (241)
Q Consensus 144 l~~dvly~~ 152 (241)
+.+-..-..
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 988666544
No 343
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=80.19 E-value=34 Score=28.67 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCeEEEecCCCC----HHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecCCCCcCcCC--CC
Q 026274 70 SGANVVELGAGTS----LPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFD--LN 139 (241)
Q Consensus 70 ~~~~VLElGcGtG----l~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~~~~~~~~~--~~ 139 (241)
+-+.++|..|+-| .+++++|.. |.+++++-.++ +-+...++.+...+.. .+|.. ++..+.... ..
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~--~~~~~~~~~l~~~~~~~~vEfvv---g~~~e~~~~~~~~ 115 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE--QSLSEYKKALGEAGLSDVVEFVV---GEAPEEVMPGLKG 115 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh--hhHHHHHHHHhhccccccceEEe---cCCHHHHHhhccC
Confidence 4467999977644 234444433 66788877775 3455555555544443 24332 332111111 25
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
.|+++- |+ ..+.....+.++++.++.|.+++++..
T Consensus 116 iDF~vV-Dc-----~~~d~~~~vl~~~~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 116 IDFVVV-DC-----KREDFAARVLRAAKLSPRGAVVVCYNA 150 (218)
T ss_pred CCEEEE-eC-----CchhHHHHHHHHhccCCCceEEEEecc
Confidence 777763 22 233344334445555667777777654
No 344
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.83 E-value=8.8 Score=30.73 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=36.4
Q ss_pred EEeccHHHHHHHHHhccCCCCCCeEEEecCC--CCH-HHHHHHHhCCEEEEEcCCC
Q 026274 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAG--TSL-PGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 50 ~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG--tGl-~sl~la~~g~~V~~tD~~~ 102 (241)
.+|.++..+++.+ .....+++||=+|+| .|. +.-.|...|++|+.++...
T Consensus 26 ~~~~a~v~l~~~~---~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 26 CTPAGILELLKRY---GIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred ChHHHHHHHHHHc---CCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3455555544443 346789999999999 376 6777778898999998774
No 345
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.73 E-value=14 Score=31.97 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=28.0
Q ss_pred CeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHH
Q 026274 72 ANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (241)
Q Consensus 72 ~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n 113 (241)
++|.=+||| .| .++..+++.|.+|++.|.++ +.++.+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~--~~l~~~~~~ 45 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE--EILKNAMEL 45 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH--HHHHHHHHH
Confidence 357778888 33 45566667788999999995 577655443
No 346
>PRK05854 short chain dehydrogenase; Provisional
Probab=79.59 E-value=41 Score=29.27 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=47.1
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCcC------c--
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDAS------I-- 135 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~~------~-- 135 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.+. +-.+.+...+... +..+.+..+|..+...- .
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR--AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999987764 2333455689999999885 3333333333222 33566777777654310 0
Q ss_pred CCCCCcEEEEcCCc
Q 026274 136 FDLNPNIILGADVF 149 (241)
Q Consensus 136 ~~~~fDlIl~~dvl 149 (241)
...+.|+++.+--+
T Consensus 90 ~~~~iD~li~nAG~ 103 (313)
T PRK05854 90 EGRPIHLLINNAGV 103 (313)
T ss_pred hCCCccEEEECCcc
Confidence 11368988866433
No 347
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=79.59 E-value=16 Score=32.32 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCC
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDS 101 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~ 101 (241)
..+.+||=.||| .|.+.+.+|+ .|++|++++.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 467899999986 4555555555 48899999873
No 348
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=79.44 E-value=5.8 Score=35.74 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=33.0
Q ss_pred CCCCCCeEEEecCCC-CHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHH
Q 026274 67 YRFSGANVVELGAGT-SLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 67 ~~~~~~~VLElGcGt-Gl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
...++.+||.+|||+ |...+.+|+. |+ +|+++|.++ +.++.+++
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~--~~~~~~~~ 227 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP--ERLEMARS 227 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHH
Confidence 345678999999986 7777777764 76 699999985 56666665
No 349
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.42 E-value=3.6 Score=33.45 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=53.4
Q ss_pred eEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHH------------HHHc--CCceEEEEeecCCCCcCcC
Q 026274 73 NVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV------------CEMN--KLNCRVMGLTWGFLDASIF 136 (241)
Q Consensus 73 ~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n------------~~~n--~~~~~~~~l~w~~~~~~~~ 136 (241)
+|-=+|.| .| .++..+|+.|.+|+++|+++ +.++.+++- ++.+ +.+.++. .++...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~--~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a----- 73 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE--EKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA----- 73 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H--HHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH-----
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh--HHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh-----
Confidence 44556777 56 34666777899999999995 455544421 0000 1222221 222210
Q ss_pred CCCCcEEEE-cCCcCC------CccHHHHHHHHHHHhhcCCCeEEEEEe--eccCchhHHHHHHHHcC
Q 026274 137 DLNPNIILG-ADVFYD------ASAFDDLFATITYLLQSSPGSVFITTY--HNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 137 ~~~fDlIl~-~dvly~------~~~~~~ll~~~~~lL~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g 195 (241)
-...|+++. -++-++ ...+...++.+...++ ++.++++.. ....+......++++.+
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~--~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLR--PGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHC--SCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHh--hcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 013566543 333333 2346777888888887 456655542 22333334445555444
No 350
>PRK08628 short chain dehydrogenase; Provisional
Probab=79.40 E-value=25 Score=29.23 Aligned_cols=77 Identities=8% Similarity=-0.017 Sum_probs=45.2
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC------
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD------ 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~------ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++. .+ .+...+...+.++.+...|..+... ...+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~--~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP--DD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh--hH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 567889999976553 23334455889999988862 33 2333334345556667777665431 0011
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
.+.|+|+.+--
T Consensus 82 ~~id~vi~~ag 92 (258)
T PRK08628 82 GRIDGLVNNAG 92 (258)
T ss_pred CCCCEEEECCc
Confidence 36788886654
No 351
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.40 E-value=13 Score=32.24 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=29.2
Q ss_pred CCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 68 RFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
...+.+||-.||| +|...+.+|+ .|++|++++.++ +..+.++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~--~~~~~~~ 206 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE--EKLELAK 206 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHH
Confidence 4467788888876 4666666666 588999999985 4555553
No 352
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.35 E-value=25 Score=28.96 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=45.1
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.||..|+- ...+++.|++|++++.+. +.++.....+. .+..+.+...|..+... ... -
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA--EAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH--HHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678899999864432 223444588999999885 34444444343 34445666666655321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+|+.+-..
T Consensus 80 ~~id~vi~~ag~ 91 (252)
T PRK06138 80 GRLDVLVNNAGF 91 (252)
T ss_pred CCCCEEEECCCC
Confidence 368988765443
No 353
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.29 E-value=3 Score=36.99 Aligned_cols=95 Identities=22% Similarity=0.299 Sum_probs=53.7
Q ss_pred CeEEEecCC-CCHHHH-HHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 72 ANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 72 ~~VLElGcG-tGl~sl-~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
.+|.=||-| .|.-+- .+..+|++|+..|.|. +-|+++.. .-+.++....-...+..+. -.+.|++|++=.+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~--~rl~~ldd---~f~~rv~~~~st~~~iee~--v~~aDlvIgaVLI 241 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI--DRLRQLDD---LFGGRVHTLYSTPSNIEEA--VKKADLVIGAVLI 241 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCH--HHHhhhhH---hhCceeEEEEcCHHHHHHH--hhhccEEEEEEEe
Confidence 456777766 343322 2233588999999995 34444333 2233333332221111111 1379999998777
Q ss_pred CCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 150 YDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 150 y~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
--...+.-..+...+.++ ||++++
T Consensus 242 pgakaPkLvt~e~vk~Mk--pGsViv 265 (371)
T COG0686 242 PGAKAPKLVTREMVKQMK--PGSVIV 265 (371)
T ss_pred cCCCCceehhHHHHHhcC--CCcEEE
Confidence 777777777777777777 444433
No 354
>PRK05876 short chain dehydrogenase; Provisional
Probab=79.27 E-value=12 Score=31.94 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
++++++|=.|++.|+- +..+++.|++|+++|.++ +-++.+...+...+.++.+...|..+... ... -
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~--~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK--PGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 5678899999876642 333455689999999885 34444444444445556666667665321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
++.|+++.+--+
T Consensus 82 g~id~li~nAg~ 93 (275)
T PRK05876 82 GHVDVVFSNAGI 93 (275)
T ss_pred CCCCEEEECCCc
Confidence 357988866543
No 355
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.85 E-value=14 Score=32.13 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=49.7
Q ss_pred CCCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC-----
Q 026274 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
..++++++|=.|++.|+ ++..+++.|++|+++|.+.. +.++.+...+...+..+.+...|..+... ...
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34678899999998774 34445666999999998642 34444444444445556666666654321 000
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-++.|+++.+--+
T Consensus 87 ~g~iD~li~nAG~ 99 (306)
T PRK07792 87 LGGLDIVVNNAGI 99 (306)
T ss_pred hCCCCEEEECCCC
Confidence 1368988865443
No 356
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.37 E-value=2.8 Score=35.42 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 69 ~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
.++.+||=+||| .| .+...|++.|. +++++|.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 466789999998 56 66777888887 899999874
No 357
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.34 E-value=23 Score=28.63 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeeccCchh-HHHHHHHHcC-CEEEEE--ecCCCCCCcccccccCCCeEEEEEEec
Q 026274 155 FDDLFATITYLLQSSPGSVFITTYHNRSGHH-LIEFLMVKWG-LKCVKL--VDGFSFLPHYKARELNGNIQLAEIVLN 228 (241)
Q Consensus 155 ~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~-~~~~~~~~~g-~~~~~i--~~~~~~~p~~~~~~~~~~~~l~~i~~~ 228 (241)
....++.+.++|+ ++|.+++....+.... ....+.+.+| |..... +..-.-.+......+....|.+-+-.+
T Consensus 35 ~~~~~~~~~rvLk--~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~K~~~~~~~~~~~~~~~~E~il~~~K 110 (231)
T PF01555_consen 35 MEEWLKECYRVLK--PGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWNKPNGMPKSNKKRFSNSHEYILVFSK 110 (231)
T ss_dssp HHHHHHHHHHHEE--EEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE-SSSTTSSTCCS-B--EEEEEEEES
T ss_pred HHHHHHHHHhhcC--CCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeEecCccccccccccccchhhhhcccc
Confidence 6778889999998 5666555555544443 4555667777 777654 433222333333244444444444333
No 358
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=78.05 E-value=5.5 Score=32.12 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=50.3
Q ss_pred EEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH--------cCCc-----eEEEEeecCCCCcCcCCC
Q 026274 74 VVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM--------NKLN-----CRVMGLTWGFLDASIFDL 138 (241)
Q Consensus 74 VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~--------n~~~-----~~~~~l~w~~~~~~~~~~ 138 (241)
|-=+|+| .| -++..++..|.+|++.|.++ +.++.+++.++. .... .....+.+....... .
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~--~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~-~- 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP--EALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA-V- 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH--HHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG-C-
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh--HHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH-h-
Confidence 4557777 23 44555666699999999995 577665554433 1111 001112222222222 1
Q ss_pred CCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 139 NPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 139 ~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
..|+|+=+ +....+.-..+++.+.+++. ++.+|...
T Consensus 78 ~adlViEa-i~E~l~~K~~~~~~l~~~~~--~~~ilasn 113 (180)
T PF02737_consen 78 DADLVIEA-IPEDLELKQELFAELDEICP--PDTILASN 113 (180)
T ss_dssp TESEEEE--S-SSHHHHHHHHHHHHCCS---TTSEEEE-
T ss_pred hhheehhh-ccccHHHHHHHHHHHHHHhC--CCceEEec
Confidence 67888843 22344556778888888864 56655544
No 359
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=77.92 E-value=6.3 Score=32.40 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=28.1
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~ 101 (241)
...++.+||=+||| .| .+...|++.|. ++++.|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 34577899999999 45 56777888887 89999988
No 360
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.70 E-value=34 Score=28.18 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=40.5
Q ss_pred CeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHH-cCCceEEEEeecCCCCc--Cc---CCCCCc
Q 026274 72 ANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDA--SI---FDLNPN 141 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~l~w~~~~~--~~---~~~~fD 141 (241)
+++|=.|+. |-+|.. +++.|++|++++.++ +-++.+..++.. .+.++.+...|..+... .. ...++|
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDV--ERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 467878855 444444 444488999999986 233333333322 23456666666655421 00 112578
Q ss_pred EEEEcC
Q 026274 142 IILGAD 147 (241)
Q Consensus 142 lIl~~d 147 (241)
+++.+-
T Consensus 79 ~vv~~a 84 (243)
T PRK07102 79 IVLIAV 84 (243)
T ss_pred EEEECC
Confidence 888543
No 361
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=77.63 E-value=3.2 Score=38.81 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCCeEEEecCCCCHHHHHHHHh--CC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEE--EeecCCC--CcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM--GLTWGFL--DASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~--g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~--~l~w~~~--~~~~~~~~fDl 142 (241)
++.+|||-=|+||+-++--|+. |. +|++-|.++ .+++.+++|++.|+..-.+. ..|.+.. ........||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~--~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNE--NAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCH--HHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 4568999999999999999986 33 899999996 59999999999997642222 1111110 01122357888
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|=. |++ ....++++..-+.++ .||++++.
T Consensus 187 IDL-DPy---Gs~s~FLDsAvqav~--~gGLL~vT 215 (525)
T KOG1253|consen 187 IDL-DPY---GSPSPFLDSAVQAVR--DGGLLCVT 215 (525)
T ss_pred Eec-CCC---CCccHHHHHHHHHhh--cCCEEEEE
Confidence 842 222 233455655555555 45555544
No 362
>PRK07035 short chain dehydrogenase; Provisional
Probab=77.56 E-value=14 Score=30.74 Aligned_cols=78 Identities=12% Similarity=0.184 Sum_probs=47.2
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------~ 137 (241)
.++++||=.|++.|+- ...+++.|++|++++.++ +-++.+.+.+...+.+..+...|..+...- .. -
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL--DGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678899999887743 334555689999999885 344544444444444555566666554310 00 1
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
.++|+++.+-.
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 35899885543
No 363
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=77.17 E-value=12 Score=31.15 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~ 101 (241)
...+..+|+=+||| .| .+...|++.|. ++++.|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 44577899999999 45 66777888887 79999998
No 364
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=76.96 E-value=19 Score=30.05 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=48.3
Q ss_pred CCCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------
Q 026274 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------ 136 (241)
.+++++|=.|+ +|.+|..+++ .|++|++++.+. +-++.+...+...+.++.+...|..+...- ..
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKA--EELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789999995 5555665554 488999999885 345555554544555566667777653210 00
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
..++|.|+.+-..
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1368988866443
No 365
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.70 E-value=15 Score=30.67 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=48.0
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH--cCCceEEEEeecCCCCc--CcC-----
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~--n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
.+++++|=.|++.|+ +...+++.|++|++++.++ +.++.+...+.. .+.++.+...|..+... ...
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA--ALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999987653 2334555689999999985 355555444443 24456666677655321 111
Q ss_pred -CCCCcEEEEcCCc
Q 026274 137 -DLNPNIILGADVF 149 (241)
Q Consensus 137 -~~~fDlIl~~dvl 149 (241)
-+.+|+++.+--+
T Consensus 83 ~~g~id~li~~ag~ 96 (260)
T PRK07063 83 AFGPLDVLVNNAGI 96 (260)
T ss_pred HhCCCcEEEECCCc
Confidence 1368888866543
No 366
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.65 E-value=16 Score=29.99 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=48.3
Q ss_pred CCCCeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
..+++||=.|++ |.+|..+ ++.|++|++++.++ +-+..+...+...+.++.+...|+.+... ...
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICG--DDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789988865 5555554 44588999999885 34444444454445556777777765421 000
Q ss_pred CCCCcEEEEcCCcCC
Q 026274 137 DLNPNIILGADVFYD 151 (241)
Q Consensus 137 ~~~fDlIl~~dvly~ 151 (241)
-.++|+|+.+-..+.
T Consensus 81 ~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 81 FGRLDILVANAGIFP 95 (251)
T ss_pred hCCCCEEEECCCCCC
Confidence 126888887654443
No 367
>PRK06949 short chain dehydrogenase; Provisional
Probab=76.59 E-value=22 Score=29.53 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=46.7
Q ss_pred CCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
..+++||=.|++ |.+|..++ +.|++|++++.++ +-++.+.......+.++.+...|..+... ...
T Consensus 7 ~~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRV--ERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 467889999954 44444444 4488999999985 45555555444444455666666654321 000
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.++|+|+.+.-.
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1367988876554
No 368
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=76.54 E-value=4.4 Score=36.02 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=45.8
Q ss_pred EEecCCCCHH-HHH-HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCc--eEEEEeecC-----CCCcCcCCCCCcEEEE
Q 026274 75 VELGAGTSLP-GLV-AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG-----FLDASIFDLNPNIILG 145 (241)
Q Consensus 75 LElGcGtGl~-sl~-la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~--~~~~~l~w~-----~~~~~~~~~~fDlIl~ 145 (241)
+|||.|+-.+ .+. +.+.+...++||+++. .+..+..|+..|+.. +.+....-. +......+..||..++
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~--s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDM--SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeecccc--ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 6777665522 222 2223557999999974 778999999999874 222222111 0001112346999999
Q ss_pred cCCcCCC
Q 026274 146 ADVFYDA 152 (241)
Q Consensus 146 ~dvly~~ 152 (241)
+.++|..
T Consensus 185 NPPFfe~ 191 (419)
T KOG2912|consen 185 NPPFFEN 191 (419)
T ss_pred CCchhhc
Confidence 9999875
No 369
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.50 E-value=4.3 Score=39.12 Aligned_cols=50 Identities=18% Similarity=0.034 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHh---CCEEEEEcCCC
Q 026274 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSN 102 (241)
Q Consensus 53 ~~s~~L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~---g~~V~~tD~~~ 102 (241)
.+++.|.+.=.++...-++..||||||-.|-+...+++. |.-|+++|+-|
T Consensus 27 RsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 27 RSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 456666555444545557788999999999888888875 44799999986
No 370
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.47 E-value=17 Score=32.12 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=51.2
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.++++||=.|++.|+ +...+++.|++|++++.++ +.++.+.+.+...+.++.+...|..+... ... .
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE--EALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 467889999986653 3334555699999999985 46666666666566666667777765431 000 1
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
.++|+++.+--
T Consensus 83 g~iD~lVnnAG 93 (330)
T PRK06139 83 GRIDVWVNNVG 93 (330)
T ss_pred CCCCEEEECCC
Confidence 46899886643
No 371
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.47 E-value=17 Score=30.53 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=50.7
Q ss_pred CCCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------
Q 026274 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------ 136 (241)
..+++++|=.|++.|+- ...++..|++|++++.++ +-++.+..+....+.++.+...|..+...- ..
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ--ELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 34778999999887643 333555689999998885 355555555554455666677776654310 00
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.++|+++.+--+
T Consensus 85 ~~~id~li~~ag~ 97 (265)
T PRK07097 85 VGVIDILVNNAGI 97 (265)
T ss_pred CCCCCEEEECCCC
Confidence 1368998866554
No 372
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=76.42 E-value=46 Score=32.12 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=43.7
Q ss_pred CCCCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHc-----C----CceEEEEeecCCCCc
Q 026274 67 YRFSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMN-----K----LNCRVMGLTWGFLDA 133 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n-----~----~~~~~~~l~w~~~~~ 133 (241)
....|+.||=.|+. |.+|..++ +.|++|++++.+. +-++.+...+... + .++.+...|..+...
T Consensus 76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~--ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSA--QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 44567888888874 55555544 4488999998885 3343333332211 1 235666677665321
Q ss_pred --CcCCCCCcEEEEcC
Q 026274 134 --SIFDLNPNIILGAD 147 (241)
Q Consensus 134 --~~~~~~fDlIl~~d 147 (241)
..+ ...|+||.+-
T Consensus 153 I~~aL-ggiDiVVn~A 167 (576)
T PLN03209 153 IGPAL-GNASVVICCI 167 (576)
T ss_pred HHHHh-cCCCEEEEcc
Confidence 111 3578887653
No 373
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=76.39 E-value=3.8 Score=34.99 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=31.4
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCCcHHHHHHHHH
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
.++..+|+=+|+| .| +..-+|++.|. +++++|.+.. .+.|+.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v--~vTN~NR 72 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV--CVTNTNR 72 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc--cccccch
Confidence 3566789999998 66 66677888887 8999999863 4444433
No 374
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=76.26 E-value=14 Score=28.16 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=21.7
Q ss_pred eEEEecCC-CC-HHHHHHHHhCC-EEEEEcCC
Q 026274 73 NVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 73 ~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~ 101 (241)
+|+=+||| .| .+...|++.|. +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 47778988 55 45666777787 89999987
No 375
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=76.02 E-value=14 Score=32.49 Aligned_cols=93 Identities=25% Similarity=0.281 Sum_probs=55.3
Q ss_pred eEEEecCC--CCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEe--ecC--CCCcCcCCCCCcEEEEc
Q 026274 73 NVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL--TWG--FLDASIFDLNPNIILGA 146 (241)
Q Consensus 73 ~VLElGcG--tGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l--~w~--~~~~~~~~~~fDlIl~~ 146 (241)
+|+=+||| .|++|..|++.|..|++.-.++ .++.+++ +|+.+.-... ... ....+.....+|+|+.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~---~~~~l~~----~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR---RLEALKK----KGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH---HHHHHHh----CCeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 67889999 4588999999997777777764 3444443 3543321111 000 00001112379998864
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
- .....+..++.+..+++ +.+.+++-
T Consensus 75 v---Ka~q~~~al~~l~~~~~--~~t~vl~l 100 (307)
T COG1893 75 V---KAYQLEEALPSLAPLLG--PNTVVLFL 100 (307)
T ss_pred e---ccccHHHHHHHhhhcCC--CCcEEEEE
Confidence 2 23467888889999886 55555544
No 376
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=75.92 E-value=19 Score=33.34 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=45.1
Q ss_pred CCCCCeEEEecCC-CCHH--HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAG-TSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~--sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..++++|+=+|.| +|+. +.+|.+.|++|+++|..+.+ .. .+ .+..++.+ . .+... ... ..+|+|+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~-~~---~~-l~~~gi~~--~---~~~~~-~~~-~~~d~vv 71 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESA-VT---QR-LLELGAII--F---IGHDA-ENI-KDADVVV 71 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCCh-HH---HH-HHHCCCEE--e---CCCCH-HHC-CCCCEEE
Confidence 4567788888888 7865 56778889999999998642 22 22 33334332 2 12211 112 2699999
Q ss_pred EcCCcCC
Q 026274 145 GADVFYD 151 (241)
Q Consensus 145 ~~dvly~ 151 (241)
.+.-+..
T Consensus 72 ~spgi~~ 78 (461)
T PRK00421 72 YSSAIPD 78 (461)
T ss_pred ECCCCCC
Confidence 9987754
No 377
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=75.73 E-value=1.2 Score=33.16 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=29.4
Q ss_pred CCcEEEEcCCcCC------CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 139 NPNIILGADVFYD------ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 139 ~fDlIl~~dvly~------~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
+||+|+|-.|.-+ .+.+..+++.+.++|+ |||.+++..++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~--pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR--PGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE--EEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC--CCCEEEEeCCC
Confidence 4899999888754 3568889999999998 78888887443
No 378
>PRK06172 short chain dehydrogenase; Provisional
Probab=75.64 E-value=17 Score=30.16 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=47.7
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+- ...+++.|++|++++.++ +-++.+...+...+.++.+...|..+... ... -
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA--AGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4678999999865533 223445588999999985 34444444444445556666677655321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+|+.+-..
T Consensus 83 g~id~li~~ag~ 94 (253)
T PRK06172 83 GRLDYAFNNAGI 94 (253)
T ss_pred CCCCEEEECCCC
Confidence 367998866543
No 379
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=75.61 E-value=7.6 Score=34.60 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=27.4
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~ 110 (241)
...++.+||=.|+| .|+..+.+|+ .|+ +|+++|.++ +-++.+
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~--~~~~~~ 225 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE--DKFEKA 225 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHH
Confidence 44568889888875 4444444555 477 799999885 344444
No 380
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.57 E-value=21 Score=30.09 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=47.5
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-cCCceEEEEeecCCCCc--CcC-----C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDA--SIF-----D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~l~w~~~~~--~~~-----~ 137 (241)
++++++|=.|++.|+ ++..+++.|++|++++.++ +-++.+.+.+.. .+.++.+...|..+... ... -
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE--ENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 568889999988774 3444555699999999985 344444444332 24456666677665421 011 1
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
+++|+++.+--
T Consensus 84 g~iD~lv~nag 94 (263)
T PRK08339 84 GEPDIFFFSTG 94 (263)
T ss_pred CCCcEEEECCC
Confidence 35888876543
No 381
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.55 E-value=10 Score=32.88 Aligned_cols=97 Identities=21% Similarity=0.193 Sum_probs=50.5
Q ss_pred CeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc------CCceE-------EEEeecCCCCcCcC
Q 026274 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------KLNCR-------VMGLTWGFLDASIF 136 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n------~~~~~-------~~~l~w~~~~~~~~ 136 (241)
++|.=||+|+ | -++..+++.|.+|++.|.++ +.++.+...+..+ ...+. ...+.+....+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA--DRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH--
Confidence 4577788872 2 44555666788999999995 4665543322211 11100 000111111111
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
-...|+|+.+ +.........+++.+...++ ++.+++
T Consensus 81 ~~~aD~Viea-vpe~~~~k~~~~~~l~~~~~--~~~ii~ 116 (292)
T PRK07530 81 LADCDLVIEA-ATEDETVKRKIFAQLCPVLK--PEAILA 116 (292)
T ss_pred hcCCCEEEEc-CcCCHHHHHHHHHHHHhhCC--CCcEEE
Confidence 1357888864 21222345567777777765 555554
No 382
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=75.14 E-value=11 Score=35.27 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=50.8
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh--C--CEEEEEcCCCcHHHHHHHHHHHHH--cCCceEEEEeecCCCCcCcCC-CC
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV--G--SNVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGLTWGFLDASIFD-LN 139 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~--g--~~V~~tD~~~~~~~l~~~~~n~~~--n~~~~~~~~l~w~~~~~~~~~-~~ 139 (241)
..++...+.++|+|+|.-+-++..+ + ..+..+|.+. .|+.+...+.+. .....-+..+...+...+... ..
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~--~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~ 274 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSR--AMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNG 274 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccch--HHHHHHHHhhcChhhcCchhccccchhcccCCCCcccc
Confidence 4456667889999977433333332 2 2699999996 588777776654 111111222222222222222 35
Q ss_pred CcEEEEcCCcCCCccH
Q 026274 140 PNIILGADVFYDASAF 155 (241)
Q Consensus 140 fDlIl~~dvly~~~~~ 155 (241)
||+|+++..+++..+-
T Consensus 275 yDlvi~ah~l~~~~s~ 290 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSK 290 (491)
T ss_pred eeeEEeeeeeeccCCc
Confidence 9999999999886543
No 383
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.12 E-value=44 Score=27.27 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=45.8
Q ss_pred CCCCeEEEecCCCCHHHHHH----HHhCCEEEEE-cCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC----
Q 026274 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLT-DDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD---- 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~l----a~~g~~V~~t-D~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~---- 137 (241)
+.++++|=.|+ +|-+|..+ ++.|++|+++ +.++ +-++.+.......+..+.+...|..+... ....
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINE--EAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678888885 45555544 4458899888 8875 34444444444445556667777765431 0010
Q ss_pred --CCCcEEEEcCCc
Q 026274 138 --LNPNIILGADVF 149 (241)
Q Consensus 138 --~~fDlIl~~dvl 149 (241)
.++|+|+.+--.
T Consensus 80 ~~~~id~vi~~ag~ 93 (247)
T PRK05565 80 KFGKIDILVNNAGI 93 (247)
T ss_pred HhCCCCEEEECCCc
Confidence 268988866543
No 384
>PRK07890 short chain dehydrogenase; Provisional
Probab=74.91 E-value=19 Score=29.84 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=47.7
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.++++||=.|++.|+ ++..+++.|++|++++.++ +-++.+...+...+.++.....|..+... ... -
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA--ERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 356889988876653 2334555689999999985 34455544444445556666676654321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+|+.+-..
T Consensus 81 g~~d~vi~~ag~ 92 (258)
T PRK07890 81 GRVDALVNNAFR 92 (258)
T ss_pred CCccEEEECCcc
Confidence 368998876544
No 385
>PRK05866 short chain dehydrogenase; Provisional
Probab=74.60 E-value=20 Score=30.92 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=47.8
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
..++++|=.|++.|+- ...+++.|++|++++.++ +.++.+.+.+...+..+.+...|..+... ... -
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678899999866532 223445588999999985 45555555454334455566666655321 001 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
+..|+++.+--.
T Consensus 116 g~id~li~~AG~ 127 (293)
T PRK05866 116 GGVDILINNAGR 127 (293)
T ss_pred CCCCEEEECCCC
Confidence 368998866443
No 386
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=74.40 E-value=9.4 Score=34.17 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=27.6
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCC
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~ 101 (241)
..+..+||=+||| .| .++..|++.|. +++++|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4567899999999 55 56777888887 89999987
No 387
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.22 E-value=5.4 Score=36.48 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=26.4
Q ss_pred eEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHH
Q 026274 73 NVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 73 ~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~ 111 (241)
+|--+|+| .| ..|..+|+.|++|+++|+++ +-++.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~--~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE--SKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHh
Confidence 45557777 56 34677888899999999996 3554443
No 388
>PRK09242 tropinone reductase; Provisional
Probab=74.12 E-value=19 Score=29.97 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCc------Cc-
Q 026274 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA------SI- 135 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~------~~- 135 (241)
..+++++|=.|++.|+- ...+++.|++|++++.++ +-++.+..++... +..+.+...|..+... ..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA--DALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 35688999999866533 333445589999999885 4555555555433 3455556666654321 00
Q ss_pred -CCCCCcEEEEcCC
Q 026274 136 -FDLNPNIILGADV 148 (241)
Q Consensus 136 -~~~~fDlIl~~dv 148 (241)
.-.++|+++.+--
T Consensus 84 ~~~g~id~li~~ag 97 (257)
T PRK09242 84 DHWDGLHILVNNAG 97 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 0136888876554
No 389
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=73.98 E-value=19 Score=29.90 Aligned_cols=79 Identities=9% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
..++++|=.|++.|+ +...+++.|++|++++.++ +-++.+...+...+..+.....|+.+... ... -
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA--ERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 467889999977653 2333445589999999985 34444444444334445556666665421 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+++.+--.
T Consensus 85 ~~id~vi~~ag~ 96 (254)
T PRK08085 85 GPIDVLINNAGI 96 (254)
T ss_pred CCCCEEEECCCc
Confidence 368998876544
No 390
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.94 E-value=23 Score=29.53 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=45.5
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------~ 137 (241)
.++++||=.|++.|+- +..+++.|++|++++.++ -++.+.+.....+.++.+...|..+...- .. -
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT---NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5788999999977633 333456699999998874 23333333333344556666666553210 01 1
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
+..|+++.+--
T Consensus 90 g~id~li~~ag 100 (258)
T PRK06935 90 GKIDILVNNAG 100 (258)
T ss_pred CCCCEEEECCC
Confidence 25788886543
No 391
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=73.72 E-value=4.9 Score=36.34 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=36.1
Q ss_pred CcceEEeccHHHHHHHHHhccCCCCCCeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHH
Q 026274 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNM 110 (241)
Q Consensus 46 ~~g~~~W~~s~~L~~~l~~~~~~~~~~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~ 110 (241)
++|..+|++=.--. .-...||.++=.|-| +| -++..+...|++|+.|+++|- .+++.+
T Consensus 190 GtgqS~~DgI~RaT------n~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI-~AleA~ 249 (420)
T COG0499 190 GTGQSLLDGILRAT------NVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPI-RALEAA 249 (420)
T ss_pred ccchhHHHHHHhhh------ceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCch-HHHHHh
Confidence 45555565433322 234688999888777 55 334445556999999999983 455433
No 392
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=73.48 E-value=2.3 Score=34.01 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=55.4
Q ss_pred CCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcCCc
Q 026274 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~dvl 149 (241)
|++++=+|+..=.+-..+.+.|| +|.-+++++- +.-+..+..+.. -....+. -+|.. ..++||.+.+...+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L-~i~~~~~dr~ss-i~p~df~-~~~~~-----y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKL-EIQEEFRDRLSS-ILPVDFA-KNWQK-----YAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeeccc-ccCccccccccc-ccHHHHH-HHHHH-----hhccchhhheechh
Confidence 67899999998888888888888 6999998841 111111110000 0000000 11221 23468888777777
Q ss_pred CCCc-----------cHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 150 YDAS-----------AFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 150 y~~~-----------~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
.|.. -....+..++.+|| +||.++++
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK--~GG~L~l~ 110 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLK--PGGLLFLG 110 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhc--cCCeEEEE
Confidence 5531 23455677889998 55655554
No 393
>PRK06701 short chain dehydrogenase; Provisional
Probab=73.43 E-value=22 Score=30.65 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
..+++++|=.|++.|+ ++..+++.|++|++++.++. ..++.+...+...+.++.+...|..+... ...
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH-EDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567899999986664 33334556899999988752 23444444444445556666666654321 011
Q ss_pred CCCCcEEEEcCC
Q 026274 137 DLNPNIILGADV 148 (241)
Q Consensus 137 ~~~fDlIl~~dv 148 (241)
-.++|+++.+-.
T Consensus 122 ~~~iD~lI~~Ag 133 (290)
T PRK06701 122 LGRLDILVNNAA 133 (290)
T ss_pred cCCCCEEEECCc
Confidence 126788885543
No 394
>PLN02827 Alcohol dehydrogenase-like
Probab=73.40 E-value=24 Score=31.73 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~ 102 (241)
...+|.+||=.|+| .|++.+.+|+ .|+ .|+++|.++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~ 228 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP 228 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 34568899999875 4444444554 477 588999875
No 395
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.26 E-value=51 Score=27.14 Aligned_cols=76 Identities=17% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
++++||=.|+ +|.+|..+++ .|++|++++.++ +-++.+...+...+.++.+...|..+... ... .
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLND--EAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4577887776 4555666555 388999999985 34444444454455566666666654321 000 1
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
..+|+|+.+--
T Consensus 80 ~~~d~vi~~a~ 90 (258)
T PRK12429 80 GGVDILVNNAG 90 (258)
T ss_pred CCCCEEEECCC
Confidence 26898886543
No 396
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=72.83 E-value=15 Score=32.10 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=53.1
Q ss_pred CeEEEecCC--CCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE------EEEeecCCCCcCcCCCCCcEE
Q 026274 72 ANVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR------VMGLTWGFLDASIFDLNPNII 143 (241)
Q Consensus 72 ~~VLElGcG--tGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~------~~~l~w~~~~~~~~~~~fDlI 143 (241)
.+|+=+||| -|+++..|++.|.+|++++-.. +-++.+++ .+|+.+. ........ +.....||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~--~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~---~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR--QRLAAYQQ---AGGLTLVEQGQASLYAIPAET---ADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech--HHHHHHhh---cCCeEEeeCCcceeeccCCCC---cccccccCEE
Confidence 468889999 4478888999999999999974 34444443 1233211 00010000 1112478988
Q ss_pred EEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 144 LGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 144 l~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
+.+==-| +.+..++.+..++. +++.+++.
T Consensus 75 iv~vK~~---~~~~al~~l~~~l~--~~t~vv~l 103 (305)
T PRK05708 75 LLACKAY---DAEPAVASLAHRLA--PGAELLLL 103 (305)
T ss_pred EEECCHH---hHHHHHHHHHhhCC--CCCEEEEE
Confidence 7542112 35566777777775 55554444
No 397
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=72.75 E-value=61 Score=27.87 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=59.2
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhC-CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
...+++||=+|+| .| .+...++..| .+|++++.+. +-.+.+.+...... .+.+ .+. . .. .-..+|+|+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~--~~a~~l~~~~~~~~-~~~~---~~~-~-~~-~~~~~DivI 190 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV--ERAEELAKLFGALG-KAEL---DLE-L-QE-ELADFDLII 190 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHhhhcc-ceee---ccc-c-hh-ccccCCEEE
Confidence 4678899999997 33 2333345568 5899999985 34444443332111 1111 111 0 11 113689999
Q ss_pred EcCCcCCCcc--HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEE
Q 026274 145 GADVFYDASA--FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVK 200 (241)
Q Consensus 145 ~~dvly~~~~--~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 200 (241)
.+-..-..+. ..++. ...++ ....++=+.|.++.+ .+...+++.|..+..
T Consensus 191 naTp~g~~~~~~~~~~~---~~~l~-~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 191 NATSAGMSGELPLPPLP---LSLLR-PGTIVYDMIYGPLPT--PFLAWAKAQGARTID 242 (278)
T ss_pred ECCcCCCCCCCCCCCCC---HHHcC-CCCEEEEeecCCCCC--HHHHHHHHCcCeecC
Confidence 8766533211 11111 13343 122333355555433 344556777876654
No 398
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=72.74 E-value=62 Score=27.91 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=45.0
Q ss_pred CceEEEEeccCcCCcceEEeccHH-HHHHHHH---hccCCCCCCeEEEecCCCCHHHHHHHH-hCC--EEEEEcCCC
Q 026274 33 PSFSIAIIENMKEEYGLFVWPCSV-ILAEYVW---QQRYRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSN 102 (241)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~s~-~L~~~l~---~~~~~~~~~~VLElGcGtGl~sl~la~-~g~--~V~~tD~~~ 102 (241)
.+-+|++... .+.+-.++|..-. .||.-|. .+.....|.+||=||+++|..--..+. .|. -|.+++.++
T Consensus 116 gEkRisv~~~-~~kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 116 GEKRISVENE-DGKVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred CceEEEeecC-CCcEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 4456666666 3577889998532 3444443 233456789999999999955444444 354 588888886
No 399
>PRK07985 oxidoreductase; Provisional
Probab=72.66 E-value=24 Score=30.37 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=47.1
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc------C
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------F 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~------~ 136 (241)
..+++++|=.|++.|+ ++..+++.|++|++++.+...+.++.+.......+..+.+...|..+... .. .
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3577899999976553 34445556999999876532233444444444445555566667665321 00 0
Q ss_pred CCCCcEEEEcCC
Q 026274 137 DLNPNIILGADV 148 (241)
Q Consensus 137 ~~~fDlIl~~dv 148 (241)
-.+.|+++.+.-
T Consensus 126 ~g~id~lv~~Ag 137 (294)
T PRK07985 126 LGGLDIMALVAG 137 (294)
T ss_pred hCCCCEEEECCC
Confidence 135788876543
No 400
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=72.54 E-value=14 Score=29.21 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=68.1
Q ss_pred HHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCC
Q 026274 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (241)
Q Consensus 60 ~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~ 139 (241)
+.|.++.+.+.|++||=+|.=.-.+...+...+.+|.+...+ .-...... ...++.+. .+.. ......
T Consensus 2 qvllR~~~~f~~k~vL~~g~~~D~~~~~L~~~~~~v~~~~~~----~~~~~~~~---~~~~~~~~---f~~~--~~~~~~ 69 (155)
T PF08468_consen 2 QVLLRNSDLFEGKSVLFAGDPQDDLPAQLPAIAVSVHVFSYH----HWYALQKQ---AQSNVQFH---FGAE--LPADQD 69 (155)
T ss_dssp HHHHTTHHHHTT-EEEEEE---SSHHHHS--SEEEEEESBHH----HHHHHHHH---HGGGEEE----SS----HHHHTT
T ss_pred hhhhhhHHHHCCCeEEEEcCCchhhHHHhhhcCCEEEEEEch----HHHHHhHh---cccCceEe---eecc--CCcccC
Confidence 456677788899999999876666666666555566655543 11211111 11222221 1111 111246
Q ss_pred CcEEEEcCCcCCCccHHHHHHHHHHHhhc-CCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecCCCCCCcccccccCC
Q 026274 140 PNIILGADVFYDASAFDDLFATITYLLQS-SPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNG 218 (241)
Q Consensus 140 fDlIl~~dvly~~~~~~~ll~~~~~lL~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~ 218 (241)
||.||. |++..-+.+--.+..++.. ++|+-+++.-++|.+-+....+++.+| .+.++ ....
T Consensus 70 ~D~vvl----y~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~-~~~Ki-------------DSAR 131 (155)
T PF08468_consen 70 FDTVVL----YWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG-KINKI-------------DSAR 131 (155)
T ss_dssp -SEEEE----E--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS---EEE----------------T
T ss_pred CCEEEE----EccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC-Cccee-------------eccc
Confidence 999984 7776654444333333332 367777777799999777777777774 55555 3445
Q ss_pred CeEEEEEE
Q 026274 219 NIQLAEIV 226 (241)
Q Consensus 219 ~~~l~~i~ 226 (241)
++.++...
T Consensus 132 hC~Ly~~~ 139 (155)
T PF08468_consen 132 HCSLYSGQ 139 (155)
T ss_dssp TEEEEEEE
T ss_pred ccEEEEEE
Confidence 66666663
No 401
>PRK06720 hypothetical protein; Provisional
Probab=72.47 E-value=26 Score=27.84 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=47.5
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++.+|=.|+|.|+ +...+++.|++|+++|.++ +.++.+...+...+....+...|..+... ... -
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ--ESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467889999988764 3444556689999999885 34444433343334445556666654321 100 1
Q ss_pred CCCcEEEEcCCcCC
Q 026274 138 LNPNIILGADVFYD 151 (241)
Q Consensus 138 ~~fDlIl~~dvly~ 151 (241)
+..|+++.+--++.
T Consensus 92 G~iDilVnnAG~~~ 105 (169)
T PRK06720 92 SRIDMLFQNAGLYK 105 (169)
T ss_pred CCCCEEEECCCcCC
Confidence 35788887654443
No 402
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.08 E-value=28 Score=28.92 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=45.4
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|+++|.++ ..+.+...+...+..+.+...|..+... ... -
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE---LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch---HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 567889999977653 3344555689999999884 2333333344445556666677665321 000 1
Q ss_pred CCCcEEEEcC
Q 026274 138 LNPNIILGAD 147 (241)
Q Consensus 138 ~~fDlIl~~d 147 (241)
..+|+++.+-
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 3689887654
No 403
>PRK07478 short chain dehydrogenase; Provisional
Probab=71.84 E-value=24 Score=29.32 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=47.6
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ +...+++.|++|++++.++ +-++.+...+...+.++.+...|..+... ... -
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ--AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 457789988887663 2344555689999999885 34555555455445556666666654321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 82 ~~id~li~~ag~ 93 (254)
T PRK07478 82 GGLDIAFNNAGT 93 (254)
T ss_pred CCCCEEEECCCC
Confidence 268888765443
No 404
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.66 E-value=32 Score=27.48 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=23.5
Q ss_pred eEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 73 NVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 73 ~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
+|+=+||| .| .+...+++.|. ++++.|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47889998 45 56777788887 799999884
No 405
>PRK08223 hypothetical protein; Validated
Probab=71.59 E-value=5 Score=35.13 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
...+..+||=+||| .| .+...||+.|. +++++|.+.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34577899999999 45 56888888887 899999885
No 406
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.30 E-value=24 Score=31.38 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=54.8
Q ss_pred CeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-------cCCceE--EEEeecCCCCcCcCCCCC
Q 026274 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------NKLNCR--VMGLTWGFLDASIFDLNP 140 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-------n~~~~~--~~~l~w~~~~~~~~~~~f 140 (241)
++|-=||+|+ | -++..++..|.+|++.|.++ +.++.++..+.. .+.... ...+........ .-...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~-av~~a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP--GAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA-CVADA 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH-HhcCC
Confidence 4677788872 3 34455666799999999995 566554443321 121100 000111111001 01357
Q ss_pred cEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 141 NIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 141 DlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+|+-+ +....+.-..+++.+.+.++ +++ ++.+
T Consensus 85 DlViEa-vpE~l~vK~~lf~~l~~~~~--~~a-IlaS 117 (321)
T PRK07066 85 DFIQES-APEREALKLELHERISRAAK--PDA-IIAS 117 (321)
T ss_pred CEEEEC-CcCCHHHHHHHHHHHHHhCC--CCe-EEEE
Confidence 888865 55566667788888888875 555 4444
No 407
>PRK06194 hypothetical protein; Provisional
Probab=71.25 E-value=22 Score=30.18 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=45.5
Q ss_pred CCCCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.+++++|=.|++.| +|.. +++.|++|+++|.+. +.++.+...+...+.++.+...|..+... ...
T Consensus 4 ~~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 4 FAGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQ--DALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCCh--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35678998886544 3444 444588999999885 34444444344335556666666654321 111
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.++|+|+.+--+
T Consensus 81 ~g~id~vi~~Ag~ 93 (287)
T PRK06194 81 FGAVHLLFNNAGV 93 (287)
T ss_pred cCCCCEEEECCCC
Confidence 1257988866544
No 408
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.05 E-value=26 Score=32.85 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=41.2
Q ss_pred CCCeEEEecCC-CCH-HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEcC
Q 026274 70 SGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (241)
Q Consensus 70 ~~~~VLElGcG-tGl-~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~d 147 (241)
++++|+=+|.| +|+ ++.+|.+.|++|++.|..+.....+. ....+..+.+.. +.......+ .+|+|+.+.
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~----L~~~~~~~~~~~---g~~~~~~~~-~~d~vv~sp 77 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAA----LRAELPDAEFVG---GPFDPALLD-GVDLVALSP 77 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHH----HHhhcCCcEEEe---CCCchhHhc-CCCEEEECC
Confidence 46788888888 563 23455667999999998753112222 233333333332 221111122 589999987
Q ss_pred CcC
Q 026274 148 VFY 150 (241)
Q Consensus 148 vly 150 (241)
-+-
T Consensus 78 ~I~ 80 (498)
T PRK02006 78 GLS 80 (498)
T ss_pred CCC
Confidence 664
No 409
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=71.02 E-value=14 Score=32.54 Aligned_cols=43 Identities=30% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~~~~~l~~~~ 111 (241)
...++.+||=.||| .|+..+.+|+ .|++|+++|.++ +-++.++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~--~~~~~~~ 207 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP--EKLEMMK 207 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH--HHHHHHH
Confidence 34468899999985 3555555565 478999999985 3455443
No 410
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=70.89 E-value=33 Score=33.45 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEE
Q 026274 155 FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 201 (241)
Q Consensus 155 ~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i 201 (241)
-+.+++.+.++++ +++. +.+|. ....+..-+.+.||++...
T Consensus 185 ~~~~~~~l~~~~~--~~~~-~~t~t---~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 185 SPNLFNALARLAR--PGAT-LATFT---SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred cHHHHHHHHHHhC--CCCE-EEEee---hHHHHHHHHHHcCCeeeec
Confidence 4788999999987 4443 33443 2344666678899998765
No 411
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=70.79 E-value=16 Score=33.04 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.1
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCC
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~ 101 (241)
..++++||=+||| .| .+...|++.|. +++++|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3467899999998 45 56777788887 89999987
No 412
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=70.74 E-value=16 Score=32.35 Aligned_cols=36 Identities=25% Similarity=0.082 Sum_probs=27.6
Q ss_pred CCCCCCeEEEecC-C-CCHHHHHHHH-hCCEEEEEcCCC
Q 026274 67 YRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGc-G-tGl~sl~la~-~g~~V~~tD~~~ 102 (241)
...+|.+||=.|+ | .|.+.+.+|+ .|++|++++.++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 3456889999998 3 6777776776 488999999885
No 413
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=70.73 E-value=26 Score=29.19 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=45.5
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++. +.+...++..+.++.+...|..+... ... -
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 467899999987773 23345556999999987642 22233333334456666666655431 001 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
++.|+++.+--+
T Consensus 82 g~iD~lv~~ag~ 93 (251)
T PRK12481 82 GHIDILINNAGI 93 (251)
T ss_pred CCCCEEEECCCc
Confidence 368988866544
No 414
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=70.59 E-value=11 Score=33.68 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=29.6
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~~ 111 (241)
....+.+||=.||| .|++.+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~--~~~~~a~ 227 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP--AKFELAK 227 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHHH
Confidence 34567899999986 4555565666 487 799999985 3455443
No 415
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.52 E-value=26 Score=29.04 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=43.8
Q ss_pred CCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CCC
Q 026274 71 GANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DLN 139 (241)
Q Consensus 71 ~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~~ 139 (241)
++++|=.|++.|+ ++..+++.|++|++++.++ +.++.+...+...+..+.+...|..+... ... -.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 4678888887663 2333455688999999885 34554544444334455666666554321 000 136
Q ss_pred CcEEEEcC
Q 026274 140 PNIILGAD 147 (241)
Q Consensus 140 fDlIl~~d 147 (241)
.|+++.+-
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 79888654
No 416
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=70.36 E-value=13 Score=28.53 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=25.1
Q ss_pred EecCCCC--HHHHHHH--Hh--CCEEEEEcCCCcHHHHHHHHHH--HHHc
Q 026274 76 ELGAGTS--LPGLVAA--KV--GSNVTLTDDSNRIEVLKNMRRV--CEMN 117 (241)
Q Consensus 76 ElGcGtG--l~sl~la--~~--g~~V~~tD~~~~~~~l~~~~~n--~~~n 117 (241)
|+||+.| .....+. .. +.+|++++.++ ..++.+++| +..|
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p--~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNP--SNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---H--HHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCH--HHHHHHhHHHHHHhc
Confidence 7999999 3333332 33 45899999995 688899998 6666
No 417
>PRK08589 short chain dehydrogenase; Validated
Probab=70.28 E-value=29 Score=29.33 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=47.0
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------~ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|++++.++ -++.+...+...+.++.+...|..+...- .. -
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAE---AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH---HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467889999987763 2334555689999999883 33333333444444566667776654210 00 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
++.|+++.+--+
T Consensus 81 g~id~li~~Ag~ 92 (272)
T PRK08589 81 GRVDVLFNNAGV 92 (272)
T ss_pred CCcCEEEECCCC
Confidence 367988866544
No 418
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=70.08 E-value=31 Score=28.68 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=46.7
Q ss_pred CCCCeEEEecCCCCHHH---HHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC------c--CC
Q 026274 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------I--FD 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~s---l~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~------~--~~ 137 (241)
..+++||=.|++.|+-. ..+++.|++|++++.++ +.++.+...+...+.++.+...|..+...- . .-
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA--DAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46889999997766432 23445588999998875 355544443433344555566666654310 0 01
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+++.+-.+
T Consensus 87 ~~~d~li~~ag~ 98 (255)
T PRK06113 87 GKVDILVNNAGG 98 (255)
T ss_pred CCCCEEEECCCC
Confidence 367888765443
No 419
>PRK08703 short chain dehydrogenase; Provisional
Probab=69.71 E-value=36 Score=27.91 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=35.3
Q ss_pred CCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCC
Q 026274 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGF 130 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~ 130 (241)
.+++++|=.||+. .+|..++ +.|++|++++.++ +-++.+...+... +....+...|..+
T Consensus 4 l~~k~vlItG~sg-giG~~la~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 4 LSDKTILVTGASQ-GLGEQVAKAYAAAGATVILVARHQ--KKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCh--HHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 4678999999654 4444444 4588999999985 3444444444322 2234455566543
No 420
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.58 E-value=34 Score=28.01 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.+++++|=.|+ +|.+|..+++ .|++|++++.++ +-++.+...+...+.++.+...|..+... ...
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTE--ENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35678888885 5656665544 488999999985 33444433344344455555555543321 000
Q ss_pred CCCCcEEEEcCC
Q 026274 137 DLNPNIILGADV 148 (241)
Q Consensus 137 ~~~fDlIl~~dv 148 (241)
-...|+|+.+--
T Consensus 82 ~~~id~vi~~ag 93 (239)
T PRK07666 82 LGSIDILINNAG 93 (239)
T ss_pred cCCccEEEEcCc
Confidence 125788886543
No 421
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=69.34 E-value=13 Score=31.16 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=27.3
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
..+..+|+=+||| .| .+...|++.|. +++++|.+.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4567899999999 55 66777888887 888887764
No 422
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=69.29 E-value=10 Score=28.99 Aligned_cols=91 Identities=20% Similarity=0.227 Sum_probs=48.1
Q ss_pred EEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE-------EEE-eecCCCCcCcCCCCCcEEE
Q 026274 75 VELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR-------VMG-LTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 75 LElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~-------~~~-l~w~~~~~~~~~~~fDlIl 144 (241)
+=+|+| .| +++-.|++.|.+|++.+-.+ -++. ++.+++.++ +.. ..+... .....++|+|+
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~---~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~vi 72 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSP---RLEA----IKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVI 72 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHH---HHHH----HHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEE
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccc---cHHh----hhheeEEEEecccceecccccccCcc--hhccCCCcEEE
Confidence 445666 33 44555555688999999872 2222 333343221 111 111110 11235799998
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEee
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYH 179 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~ 179 (241)
.+= -....+.+++.++..+. +++.+++...
T Consensus 73 v~v---Ka~~~~~~l~~l~~~~~--~~t~iv~~qN 102 (151)
T PF02558_consen 73 VAV---KAYQLEQALQSLKPYLD--PNTTIVSLQN 102 (151)
T ss_dssp E-S---SGGGHHHHHHHHCTGEE--TTEEEEEESS
T ss_pred EEe---cccchHHHHHHHhhccC--CCcEEEEEeC
Confidence 762 22356778888888887 5565555543
No 423
>PRK08303 short chain dehydrogenase; Provisional
Probab=68.95 E-value=27 Score=30.40 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=45.8
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCc--------HHHHHHHHHHHHHcCCceEEEEeecCCCCcC---
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNR--------IEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--- 134 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~--------~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--- 134 (241)
.+++.+|=.|++.|+ ++..+++.|++|++++.+.. ++-++.+.+.+...+..+.+...|..+...-
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 578899999988773 33445556899999988631 1233434444444444455566666543210
Q ss_pred ---cC--CCCCcEEEEcC
Q 026274 135 ---IF--DLNPNIILGAD 147 (241)
Q Consensus 135 ---~~--~~~fDlIl~~d 147 (241)
.. -++.|+++.+-
T Consensus 86 ~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 00 13689888654
No 424
>PRK06153 hypothetical protein; Provisional
Probab=68.69 E-value=6 Score=36.10 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 69 ~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
+++.+|+=+||| +| .+...||+.|. +++++|.+.
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 456799999999 77 67888999987 899999883
No 425
>PRK07814 short chain dehydrogenase; Provisional
Probab=68.52 E-value=37 Score=28.46 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCCCeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------
Q 026274 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------ 136 (241)
.+++++|=.|++. .+|..+ ++.|++|++++.++ +-++.+.+.+...+..+.+...|..+...- ..
T Consensus 8 ~~~~~vlItGasg-gIG~~~a~~l~~~G~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 8 LDDQVAVVTGAGR-GLGAAIALAFAEAGADVLIAARTE--SQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678899999654 444444 44588999999985 345544444443344556666666553210 00
Q ss_pred CCCCcEEEEcC
Q 026274 137 DLNPNIILGAD 147 (241)
Q Consensus 137 ~~~fDlIl~~d 147 (241)
-.++|+|+.+-
T Consensus 85 ~~~id~vi~~A 95 (263)
T PRK07814 85 FGRLDIVVNNV 95 (263)
T ss_pred cCCCCEEEECC
Confidence 13689888654
No 426
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=68.39 E-value=27 Score=28.65 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred cCCCCCCeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHH
Q 026274 66 RYRFSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 66 ~~~~~~~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~ 112 (241)
....+|++|+=+|.| -+|..+ .+.|++|+++|.++ +.++.+..
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~--~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINE--EAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHH
Confidence 455789999999998 344444 44589999999985 44544433
No 427
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.37 E-value=18 Score=30.87 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=24.2
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH-hCCE-EEEEcCCC
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~-~g~~-V~~tD~~~ 102 (241)
.++.+||=.|+| .|++.+.+|+ .|++ |+++|.++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 478899999886 4555555555 4775 99998875
No 428
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.08 E-value=34 Score=28.54 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=47.2
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecCCCCcC------c--
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDAS------I-- 135 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~~~~~~------~-- 135 (241)
.+++.+|=.|++.|+ ++..+++.|++|++++.++ +-++.+.+.+... +..+.+...|..+...- .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE--ERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999987763 3344555689999999985 3444444333322 23455566676654210 0
Q ss_pred CCCCCcEEEEcCCc
Q 026274 136 FDLNPNIILGADVF 149 (241)
Q Consensus 136 ~~~~fDlIl~~dvl 149 (241)
.-...|+++.+--+
T Consensus 84 ~~g~id~li~~Ag~ 97 (265)
T PRK07062 84 RFGGVDMLVNNAGQ 97 (265)
T ss_pred hcCCCCEEEECCCC
Confidence 01368988766543
No 429
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.07 E-value=17 Score=32.74 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=27.1
Q ss_pred CCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 68 RFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 68 ~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
..++.+||=+||| .| .+...|+..|. +++++|.+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4567899999999 45 56677788776 788888874
No 430
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.04 E-value=15 Score=32.45 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=28.1
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH--hC-CEEEEEcCCCcHHHHHHHH
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK--VG-SNVTLTDDSNRIEVLKNMR 111 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~--~g-~~V~~tD~~~~~~~l~~~~ 111 (241)
..|.+||=+||| .|++.+.+++ .| ++|+++|.++ +-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~--~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ--EKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH--hHHHHHh
Confidence 468899999987 5666555555 24 4899999985 3445444
No 431
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=68.01 E-value=40 Score=27.72 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.+++++|=.|+ +|.+|..+++ .|++|+++.-.. ++.++.+...+...+.++.+...|..+... ...
T Consensus 4 ~~~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 4 LNGKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSS-KEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCc-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35788999995 5666666554 488888765432 234444433344445566677777765421 000
Q ss_pred CCCCcEEEEcCCcC
Q 026274 137 DLNPNIILGADVFY 150 (241)
Q Consensus 137 ~~~fDlIl~~dvly 150 (241)
-.+.|+|+.+-...
T Consensus 82 ~~~id~vi~~ag~~ 95 (247)
T PRK12935 82 FGKVDILVNNAGIT 95 (247)
T ss_pred cCCCCEEEECCCCC
Confidence 13578888665443
No 432
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=67.96 E-value=31 Score=28.40 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=44.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--c------CC
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--I------FD 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~------~~ 137 (241)
++++++|=.|++.|+ +...+++.|++|++++.++. +.+...+...+..+.+...|..+...- . .-
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP----SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH----HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 568899999997663 23334445889999998641 223333333344556666666654210 0 01
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.++|+++.+--+
T Consensus 79 ~~~d~li~~ag~ 90 (248)
T TIGR01832 79 GHIDILVNNAGI 90 (248)
T ss_pred CCCCEEEECCCC
Confidence 368988866543
No 433
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=67.91 E-value=39 Score=27.73 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=44.7
Q ss_pred CCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 70 SGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
+++++|=.|++. .+|..++ +.|++|++++.+. +..+.+...+...+.++.+...|..+... ... -
T Consensus 2 ~~~~ilItGas~-~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGGGG-GIGGATCRRFAEEGAKVAVFDLNR--EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567888888654 4444444 4488999999885 34444555454445556666666654321 000 1
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
.+.|+++.+-.
T Consensus 79 ~~~d~vi~~ag 89 (250)
T TIGR03206 79 GPVDVLVNNAG 89 (250)
T ss_pred CCCCEEEECCC
Confidence 25787775553
No 434
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=67.88 E-value=78 Score=27.10 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=50.1
Q ss_pred eEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceE---E-EEeecCCCCcCcCCCCCcEEEEc
Q 026274 73 NVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR---V-MGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 73 ~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~---~-~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
+|+=+||| .| .++..+++.|.+|++.+.++ +.++.+++ ++..+. . ........... ...+|+|+.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~--~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG--AHLDALNE----NGLRLEDGEITVPVLAADDPAE--LGPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh--HHHHHHHH----cCCcccCCceeecccCCCChhH--cCCCCEEEEe
Confidence 57778887 23 55666667788999999864 34444433 233220 0 00000010011 1478988866
Q ss_pred CCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 147 DVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 147 dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
=--+ ..+.+++.+...+. ++..+++.
T Consensus 74 ~k~~---~~~~~~~~l~~~l~--~~~~iv~~ 99 (304)
T PRK06522 74 VKAY---QLPAALPSLAPLLG--PDTPVLFL 99 (304)
T ss_pred cccc---cHHHHHHHHhhhcC--CCCEEEEe
Confidence 4333 46777888877764 45544443
No 435
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=67.86 E-value=29 Score=29.28 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=46.3
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ +...+++.|++|++++.++ +.++.+...+...+.++.+...|..+... ... -
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ--EKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467889999987663 2333455689999999985 34554444444444455566666654321 000 1
Q ss_pred CCCcEEEEcC
Q 026274 138 LNPNIILGAD 147 (241)
Q Consensus 138 ~~fDlIl~~d 147 (241)
.++|+++.+-
T Consensus 86 g~id~li~~a 95 (278)
T PRK08277 86 GPCDILINGA 95 (278)
T ss_pred CCCCEEEECC
Confidence 3688888653
No 436
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=67.81 E-value=23 Score=29.02 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=25.5
Q ss_pred CCCCCCeEEEecCCC-C-HHHHHHHHhCC-EEEEEcCCC
Q 026274 67 YRFSGANVVELGAGT-S-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcGt-G-l~sl~la~~g~-~V~~tD~~~ 102 (241)
...+..+||=+|||. | -+...|+..|. +++..|.+.
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 345678999999984 3 44555666676 799998874
No 437
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=67.80 E-value=29 Score=28.60 Aligned_cols=75 Identities=17% Similarity=0.048 Sum_probs=43.9
Q ss_pred CeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc------Cc--CCCC
Q 026274 72 ANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--FDLN 139 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~------~~--~~~~ 139 (241)
+++|=.|++ |.+|..+++ .|++|++++.++ +-.+.+.......+.++.+...|+.+... .. ....
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGE--AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 467777854 444555443 488999999985 34444444444445566667777765431 00 0135
Q ss_pred CcEEEEcCCc
Q 026274 140 PNIILGADVF 149 (241)
Q Consensus 140 fDlIl~~dvl 149 (241)
.|+|+.+-..
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 7888766543
No 438
>PRK06125 short chain dehydrogenase; Provisional
Probab=67.70 E-value=40 Score=28.08 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-CCceEEEEeecCCCCc--Cc--CCCCC
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDA--SI--FDLNP 140 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~~~~~~l~w~~~~~--~~--~~~~f 140 (241)
.+++++|=.|++.|+- ...+++.|++|++++.++ +.++.+...+... +.++.+...|..+... .. .-.+.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA--DALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 4678999999866632 233455689999999885 4455444444332 4455566666654321 00 01368
Q ss_pred cEEEEcCCc
Q 026274 141 NIILGADVF 149 (241)
Q Consensus 141 DlIl~~dvl 149 (241)
|+++.+--+
T Consensus 83 d~lv~~ag~ 91 (259)
T PRK06125 83 DILVNNAGA 91 (259)
T ss_pred CEEEECCCC
Confidence 888876543
No 439
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=67.65 E-value=11 Score=34.06 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCC
Q 026274 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 70 ~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~ 102 (241)
.+.+|+=+|+| .|......++ +|++|+++|.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 55679999887 5544444443 588999999985
No 440
>PRK08324 short chain dehydrogenase; Validated
Probab=67.60 E-value=90 Score=30.61 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=44.6
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
...+++||=.|++.|+ +...+++.|++|+++|.++ +-++.+...+... ..+.+...|..+... ...
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~--~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE--EAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH--HHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3467899999975442 2333444588999999985 3444443333222 245555666554321 001
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-+++|+|+.+--+
T Consensus 496 ~g~iDvvI~~AG~ 508 (681)
T PRK08324 496 FGGVDIVVSNAGI 508 (681)
T ss_pred cCCCCEEEECCCC
Confidence 1368998866544
No 441
>PRK07791 short chain dehydrogenase; Provisional
Probab=67.50 E-value=32 Score=29.48 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=48.1
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCC-------cHHHHHHHHHHHHHcCCceEEEEeecCCCCc--C--
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSN-------RIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--S-- 134 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~-------~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~-- 134 (241)
.+++++|=.|++.|+- +..+++.|++|+++|.+. ..+.++.+.+.+...+.++.+...|..+... .
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 5678999999888743 334556699999998763 0123444434344445555566666655321 0
Q ss_pred --cC--CCCCcEEEEcCCcC
Q 026274 135 --IF--DLNPNIILGADVFY 150 (241)
Q Consensus 135 --~~--~~~fDlIl~~dvly 150 (241)
.. -++.|+++.+--+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 00 13689888765443
No 442
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.30 E-value=52 Score=30.17 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=41.3
Q ss_pred CCCCeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
.++++|+=+|+|. | .++..+++.|++|+++|.++. +.++...+.+...+.. +...+..+ . ....+|+|+.+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~~l~~~~~~--~~~~~~~~---~-~~~~~d~vv~~ 75 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-DQLKEALEELGELGIE--LVLGEYPE---E-FLEGVDLVVVS 75 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHHHHhcCCE--EEeCCcch---h-HhhcCCEEEEC
Confidence 3678899999885 2 223334455999999999863 3333333333433433 33322221 1 12368988776
Q ss_pred CCc
Q 026274 147 DVF 149 (241)
Q Consensus 147 dvl 149 (241)
.-+
T Consensus 76 ~g~ 78 (450)
T PRK14106 76 PGV 78 (450)
T ss_pred CCC
Confidence 544
No 443
>PRK07825 short chain dehydrogenase; Provisional
Probab=67.27 E-value=74 Score=26.65 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=43.2
Q ss_pred CCCCeEEEecCCCCHHH---HHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC------c--CC
Q 026274 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------I--FD 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~s---l~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~------~--~~ 137 (241)
.+++++|=.|++.|+-. ..+++.|++|++++.++ +-++.+..... .+.+...|+.+...- . .-
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDE--ALAKETAAELG----LVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhc----cceEEEccCCCHHHHHHHHHHHHHHc
Confidence 35678999998766332 23445589999999885 34443333221 345566676654210 0 01
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
...|+++.+--+
T Consensus 77 ~~id~li~~ag~ 88 (273)
T PRK07825 77 GPIDVLVNNAGV 88 (273)
T ss_pred CCCCEEEECCCc
Confidence 367888866443
No 444
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=66.88 E-value=9.6 Score=31.25 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=24.6
Q ss_pred CCCCCeEEEecCCC-C-HHHHHHHHhCC-EEEEEcCC
Q 026274 68 RFSGANVVELGAGT-S-LPGLVAAKVGS-NVTLTDDS 101 (241)
Q Consensus 68 ~~~~~~VLElGcGt-G-l~sl~la~~g~-~V~~tD~~ 101 (241)
..++.+|+=+|||. | -+...|++.|. +++.+|.+
T Consensus 16 ~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 16 KLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 34567899999993 4 44555666676 79898876
No 445
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=66.86 E-value=55 Score=30.18 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=62.5
Q ss_pred CeEEEecCC-CCHH-HHHHHHhCCEEEEEcCCCcHHHHHHHHH----------------HHHHcCCceEEEEeecCCCCc
Q 026274 72 ANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNRIEVLKNMRR----------------VCEMNKLNCRVMGLTWGFLDA 133 (241)
Q Consensus 72 ~~VLElGcG-tGl~-sl~la~~g~~V~~tD~~~~~~~l~~~~~----------------n~~~n~~~~~~~~l~w~~~~~ 133 (241)
.+|-=+|=| .|++ +.++|+.|++|++.|+++ ..++.+.+ .+....+.. .....
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~--~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra-------Ttd~~ 80 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQ--KKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA-------TTDPE 80 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCH--HHHHHHhCCcceeecCcHHHHHHHHHhcCCceE-------ecChh
Confidence 456666666 6754 666777899999999995 45554432 111111111 01001
Q ss_pred CcCCCCCcEEE-EcCCc---CCCc---cHHHHHHHHHHHhhcCCCeEEEEE--eeccCchhHHHHHHHH-cCCEEE
Q 026274 134 SIFDLNPNIIL-GADVF---YDAS---AFDDLFATITYLLQSSPGSVFITT--YHNRSGHHLIEFLMVK-WGLKCV 199 (241)
Q Consensus 134 ~~~~~~fDlIl-~~dvl---y~~~---~~~~ll~~~~~lL~~~~~~~~~~~--~~~r~~~~~~~~~~~~-~g~~~~ 199 (241)
. -...|+++ +-.+. |..+ .++...+++...|+ +|-++++. .++-.+.+....+.+. -|+.+.
T Consensus 81 ~--l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~--kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~ 152 (436)
T COG0677 81 E--LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLK--KGDLVILESTTPPGTTEEVVKPLLEERSGLKFG 152 (436)
T ss_pred h--cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcC--CCCEEEEecCCCCCcHHHHHHHHHhhcCCCccc
Confidence 1 11456544 33333 2333 45666778888888 44444443 3444556666667665 666663
No 446
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=66.83 E-value=19 Score=25.09 Aligned_cols=43 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred HHHHHhccCCCCCCeEEEecCCCC--HHHHHHHHh--CCEEEEEcCC
Q 026274 59 AEYVWQQRYRFSGANVVELGAGTS--LPGLVAAKV--GSNVTLTDDS 101 (241)
Q Consensus 59 ~~~l~~~~~~~~~~~VLElGcGtG--l~sl~la~~--g~~V~~tD~~ 101 (241)
.+|+.........++||=+||-|| +.+-..+.. |++.+++-.+
T Consensus 27 I~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 27 IEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 345555444433489999999887 454444443 5688887665
No 447
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.72 E-value=40 Score=27.73 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=44.4
Q ss_pred CCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------
Q 026274 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------ 136 (241)
.+++++|=.|+ +|.+|..++ +.|++|++++.++ +-++.+...+...+........|..+...- ..
T Consensus 4 ~~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 4 FDDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINA--EGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46778998885 444455544 4588999999885 344444444433333444555665543210 00
Q ss_pred CCCCcEEEEcCCc
Q 026274 137 DLNPNIILGADVF 149 (241)
Q Consensus 137 ~~~fDlIl~~dvl 149 (241)
-.++|+|+.+-.+
T Consensus 81 ~~~id~vi~~ag~ 93 (250)
T PRK07774 81 FGGIDYLVNNAAI 93 (250)
T ss_pred hCCCCEEEECCCC
Confidence 1258999876554
No 448
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.62 E-value=23 Score=33.06 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=42.0
Q ss_pred CCCCCCeEEEecCC-CCH-HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAG-TSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl-~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
..+.+++|+=+|+| +|. +..++.+.|++|++.|.+.. ... +-....++. +....+. .... ..+|+|+
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~--~~~---~~l~~~gi~--~~~~~~~---~~~~-~~~d~vV 79 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET--ARH---KLIEVTGVA--DISTAEA---SDQL-DSFSLVV 79 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH--HHH---HHHHhcCcE--EEeCCCc---hhHh-cCCCEEE
Confidence 34567889999998 664 34556667999999997641 111 111222433 2221111 1111 2689999
Q ss_pred EcCCcC
Q 026274 145 GADVFY 150 (241)
Q Consensus 145 ~~dvly 150 (241)
.|.-+-
T Consensus 80 ~Spgi~ 85 (473)
T PRK00141 80 TSPGWR 85 (473)
T ss_pred eCCCCC
Confidence 888764
No 449
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=66.20 E-value=50 Score=29.96 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCCCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHH--HHHHHHHHcCCceEEEEeecCCCCc--CcCCC-
Q 026274 68 RFSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLK--NMRRVCEMNKLNCRVMGLTWGFLDA--SIFDL- 138 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~--~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~~- 138 (241)
..++++||=.| |||.+|..+++ .|++|++++.+.. -+. ............+.+...|+.+... .....
T Consensus 57 ~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~--~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 57 EPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKS--GIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred CCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechh--hccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence 34677899998 68888877765 3889999998752 111 0111111112345667777766431 11112
Q ss_pred --CCcEEEEc
Q 026274 139 --NPNIILGA 146 (241)
Q Consensus 139 --~fDlIl~~ 146 (241)
.+|+|+.+
T Consensus 134 ~~~~D~Vi~~ 143 (390)
T PLN02657 134 GDPVDVVVSC 143 (390)
T ss_pred CCCCcEEEEC
Confidence 58998853
No 450
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=66.15 E-value=33 Score=29.40 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=43.5
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
|...+... ....+..|||-=+|+|..++++.+.|...++.++++ +.++.+.+.+..
T Consensus 211 l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~--~y~~~~~~r~~~ 266 (302)
T COG0863 211 LIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINP--EYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCH--HHHHHHHHHHHh
Confidence 33333333 456788999999999999999999999999999995 677776665554
No 451
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.67 E-value=44 Score=27.38 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=44.0
Q ss_pred CCCCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC------cC--
Q 026274 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS------IF-- 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~------~~-- 136 (241)
.+++++|=.|++.|+ |.. +++.|++|+++|.++ +-++.+.+.+...+.++.+...|..+.... ..
T Consensus 3 ~~~~~~lItG~~g~i-G~~~a~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQGL-GRAMAEYLAQKGAKLALIDLNQ--EKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467889999975553 333 444588999999985 344444444444444555555554432110 00
Q ss_pred CCCCcEEEEcCC
Q 026274 137 DLNPNIILGADV 148 (241)
Q Consensus 137 ~~~fDlIl~~dv 148 (241)
-.++|.|+.+--
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 135788886543
No 452
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=65.55 E-value=33 Score=33.96 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=57.6
Q ss_pred CeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-------C-Cc-----eEEEEeecCCCCcCcC
Q 026274 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------K-LN-----CRVMGLTWGFLDASIF 136 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-------~-~~-----~~~~~l~w~~~~~~~~ 136 (241)
++|-=||+|+ | -++..+|..|..|++.|.++ +.++.++..+..+ + +. .....+.........
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ--HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF- 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 3688889994 2 44555667799999999995 6776555444321 1 10 000001111111111
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVF 174 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~ 174 (241)
...|+|+=+ +..+.+.-..++..+..+++ +++++
T Consensus 391 -~~aDlViEa-v~E~l~~K~~vf~~l~~~~~--~~~il 424 (714)
T TIGR02437 391 -DNVDIVVEA-VVENPKVKAAVLAEVEQHVR--EDAIL 424 (714)
T ss_pred -cCCCEEEEc-CcccHHHHHHHHHHHHhhCC--CCcEE
Confidence 368999865 66667788899999999986 55543
No 453
>PRK06128 oxidoreductase; Provisional
Probab=65.35 E-value=43 Score=28.84 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=45.5
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ +...+++.|++|+++..+....-.+.+.+.+...+.++.+...|..+... ... -
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 567899999976553 23334455889998877542122333333344445555566666654321 011 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 133 g~iD~lV~nAg~ 144 (300)
T PRK06128 133 GGLDILVNIAGK 144 (300)
T ss_pred CCCCEEEECCcc
Confidence 368998866543
No 454
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=65.17 E-value=31 Score=23.34 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=28.3
Q ss_pred EEEecCC-CC-HHHHHHHHhCCEEEEEcCCCc------HHHHHHHHHHHHHcCCce
Q 026274 74 VVELGAG-TS-LPGLVAAKVGSNVTLTDDSNR------IEVLKNMRRVCEMNKLNC 121 (241)
Q Consensus 74 VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~------~~~l~~~~~n~~~n~~~~ 121 (241)
|+=+|+| +| -++..++..|.+|+..+.++. +++.+.+++..+..++++
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v 57 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEV 57 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEE
Confidence 4445555 23 233444455889999998873 234455666666666643
No 455
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=65.16 E-value=19 Score=32.87 Aligned_cols=103 Identities=11% Similarity=0.030 Sum_probs=54.9
Q ss_pred CCCeEEEecCCCCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHHHHHHc-------CC---ceEEEEeecCCCCc-CcC
Q 026274 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN-------KL---NCRVMGLTWGFLDA-SIF 136 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n-------~~---~~~~~~l~w~~~~~-~~~ 136 (241)
++....|||+|.|-+-.++|.. +. .-+|..+.+. .-+.+..|...+ |. .+...+.++-+... ...
T Consensus 192 ~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~--pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 192 PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDK--PSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred CCCcccCCCcccchhhHHHHHhhccccccceeeecC--cHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 4567899999999665555554 44 5667766653 223333222221 22 23333333322110 112
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
....++|+.+.+.|.++..-.+-+-+.. + .+|+.++.+
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~-c--k~gtrIiS~ 307 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSKEILQK-C--KDGTRIISS 307 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhHHHHhh-C--CCcceEecc
Confidence 3468999999999987655554422222 2 256666655
No 456
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=65.12 E-value=5 Score=35.48 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=38.5
Q ss_pred CCCCCeEEEecCCCCHHHHHHHHh--CCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecC
Q 026274 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~sl~la~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~ 129 (241)
..++..++|.--|.|--+..+.+. +.+|++.|.++ ++++.++++......++.+...++.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~--~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDP--EALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-H--HHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCH--HHHHHHHHHHhhccceEEEEeccHH
Confidence 446678999999999777777764 45999999995 7998887766544444544444433
No 457
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.91 E-value=36 Score=27.73 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=44.1
Q ss_pred CCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------
Q 026274 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------ 136 (241)
.++++||=.|++.| +|..++ +.|++|++++.++ +-++.+.......+ .+.+...|+.+...- ..
T Consensus 3 ~~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 3 LKGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNE--NKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred cCCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHH
Confidence 35788999998644 344333 4488999999985 34444433333222 455566677653210 00
Q ss_pred CCCCcEEEEcCCcC
Q 026274 137 DLNPNIILGADVFY 150 (241)
Q Consensus 137 ~~~fDlIl~~dvly 150 (241)
-.+.|.++.+-..+
T Consensus 79 ~~~id~ii~~ag~~ 92 (238)
T PRK05786 79 LNAIDGLVVTVGGY 92 (238)
T ss_pred hCCCCEEEEcCCCc
Confidence 12468777655443
No 458
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=64.86 E-value=67 Score=28.19 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCCeEEEecCC-CCHH-HHHHHHhCC-EEEEEcCCC
Q 026274 69 FSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~-sl~la~~g~-~V~~tD~~~ 102 (241)
..+++|+=+||| .|.. ...+...|+ +|+++|.++
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 578899999986 4432 222333354 899999985
No 459
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=64.67 E-value=33 Score=34.00 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=58.0
Q ss_pred CeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-------C-Cce-----EEEEeecCCCCcCcC
Q 026274 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------K-LNC-----RVMGLTWGFLDASIF 136 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-------~-~~~-----~~~~l~w~~~~~~~~ 136 (241)
++|-=||+|+ | -++..+|..|.+|++.|.++ +.++.+...+..+ + ..- ....+.........
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ--KALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 4688999995 3 55666777899999999995 6776554433221 1 100 00011111111111
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVF 174 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~ 174 (241)
...|+|+=+ +....+.-..+++.+..+++ +++++
T Consensus 391 -~~aDlViEa-v~E~l~~K~~vf~~l~~~~~--~~~il 424 (715)
T PRK11730 391 -ERVDVVVEA-VVENPKVKAAVLAEVEQKVR--EDTIL 424 (715)
T ss_pred -cCCCEEEec-ccCcHHHHHHHHHHHHhhCC--CCcEE
Confidence 368888855 55667777889999999976 55444
No 460
>PLN02494 adenosylhomocysteinase
Probab=64.63 E-value=10 Score=35.51 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCCCCeEEEecCC-CCHH-HHHHHHhCCEEEEEcCCC
Q 026274 68 RFSGANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~-sl~la~~g~~V~~tD~~~ 102 (241)
...|++|+=+|+| .|.. +..+...|++|+++|.++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999 5522 333333588999999996
No 461
>PRK05993 short chain dehydrogenase; Provisional
Probab=64.56 E-value=55 Score=27.70 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=40.0
Q ss_pred CCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc------C---cCC
Q 026274 71 GANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------S---IFD 137 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~------~---~~~ 137 (241)
+++||=.||+.| +|.. +++.|++|++++.++ +.++.+.. .+ +.+...|..+... . ...
T Consensus 4 ~k~vlItGasgg-iG~~la~~l~~~G~~Vi~~~r~~--~~~~~l~~----~~--~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGCSSG-IGAYCARALQSDGWRVFATCRKE--EDVAALEA----EG--LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCH--HHHHHHHH----CC--ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567898897544 4444 444588999999885 34443322 22 3445566554321 0 011
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
+..|+++.+--+
T Consensus 75 g~id~li~~Ag~ 86 (277)
T PRK05993 75 GRLDALFNNGAY 86 (277)
T ss_pred CCccEEEECCCc
Confidence 367998876433
No 462
>PLN02780 ketoreductase/ oxidoreductase
Probab=64.52 E-value=35 Score=29.99 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc--CCceEEEEeecC
Q 026274 70 SGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWG 129 (241)
Q Consensus 70 ~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n--~~~~~~~~l~w~ 129 (241)
.|+.+|=.||+.|+ ++..+++.|++|++++.++ +-++.+.+.+... +..+.....|..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~--~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP--DKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 47889999987774 4444566699999999985 4666655555443 234555566654
No 463
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=64.41 E-value=87 Score=28.04 Aligned_cols=115 Identities=15% Similarity=0.055 Sum_probs=63.0
Q ss_pred HhccCCCCCCeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 63 WQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 63 ~~~~~~~~~~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
.++...+.+++||=+|--...+...++....+|...+++. . ..+..+ .+..+.+- +... ......||+
T Consensus 12 ~r~~~~~~~~~~l~~~~~~d~~~~~l~~~~~~~~~~~~~~---~-~~~~~~---~~~~~~f~-~~~~----~~~~~~~d~ 79 (342)
T PRK09489 12 LRHSDDFEQRRVLFAGDLQDDLPAQLDAASVRVHTQQFHH---W-QVLSRQ---MGDNARFS-LVAT----AEDVADCDT 79 (342)
T ss_pred HhhHHHhCCCcEEEEcCcchhhHHhhhccceEEehhhhHH---H-HHHHhh---cCCceEec-cccC----CccCCCCCE
Confidence 3444557888999999776655545542222566666652 1 111111 12222221 1111 112247998
Q ss_pred EEEcCCcCCCcc---HHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcC
Q 026274 143 ILGADVFYDASA---FDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWG 195 (241)
Q Consensus 143 Il~~dvly~~~~---~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 195 (241)
|+. |.+.. .+-++..+...|. +|+.+++.-+.+.+.+....+++.++
T Consensus 80 ~~~----~~pk~k~~~~~~l~~~~~~l~--~g~~i~~~G~~~~g~~s~~k~~~~~~ 129 (342)
T PRK09489 80 LIY----YWPKNKQEAQFQLMNLLSLLP--VGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred EEE----ECCCCHHHHHHHHHHHHHhCC--CCCEEEEEEeccccHHHHHHHHHHhc
Confidence 874 56654 3444555556664 67888888888888666666555553
No 464
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=63.95 E-value=32 Score=32.08 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=44.4
Q ss_pred CCCCeEEEecCC-CCHH-HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~-sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
+.+++|+=+|=| +|+. .-+|.+.|+.|++.|..+. . +..... ..+...+.+....... .....+|+|+.|
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~--~-~~~~~~-~~~~~~i~~~~g~~~~----~~~~~~d~vV~S 76 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA--P-EGLAAQ-PLLLEGIEVELGSHDD----EDLAEFDLVVKS 76 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC--c-cchhhh-hhhccCceeecCccch----hccccCCEEEEC
Confidence 347899999988 7744 5556677999999999974 2 211111 2122223333222111 112368999999
Q ss_pred CCcCC
Q 026274 147 DVFYD 151 (241)
Q Consensus 147 dvly~ 151 (241)
+-+-.
T Consensus 77 PGi~~ 81 (448)
T COG0771 77 PGIPP 81 (448)
T ss_pred CCCCC
Confidence 87744
No 465
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=63.63 E-value=31 Score=30.53 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=64.2
Q ss_pred CCCeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHH-----HcCCceEEEEeecCCCCcCcCCCCCcE
Q 026274 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE-----MNKLNCRVMGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~-----~n~~~~~~~~l~w~~~~~~~~~~~fDl 142 (241)
..++||=+|-|-|-.--..++.. .++...|++. .+++.-++=.. -.+.++.....|-..+......++||+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~--~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDE--NVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhH--HHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45789999999775444444442 2799999996 35554443222 123455555444443333444568999
Q ss_pred EE--EcCCcCC--CccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 143 IL--GADVFYD--ASAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 143 Il--~~dvly~--~~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
|+ ++|++-- .-..++.+..+.+.|+ |++++++-..+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk--~dgv~~~q~ec 238 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALK--GDGVVCTQGEC 238 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhC--CCcEEEEecce
Confidence 98 4455533 1246777888889987 56655544333
No 466
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.62 E-value=24 Score=33.16 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCCCeEEEecCC-CCHHHHH-HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEEEc
Q 026274 69 FSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~-la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl~~ 146 (241)
..+++|+=+|.| +|+..+. |.+.|++|+++|..+ ..++. ++..+.. +....+. .... ..+|+|+.|
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~--~~~~~----l~~~g~~--~~~~~~~---~~~l-~~~D~VV~S 77 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP--DALRP----HAERGVA--TVSTSDA---VQQI-ADYALVVTS 77 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH--HHHHH----HHhCCCE--EEcCcch---HhHh-hcCCEEEEC
Confidence 467899999998 6755443 445699999999764 23332 2223432 2221111 1111 258999988
Q ss_pred CCcCC
Q 026274 147 DVFYD 151 (241)
Q Consensus 147 dvly~ 151 (241)
.-+-.
T Consensus 78 pGi~~ 82 (488)
T PRK03369 78 PGFRP 82 (488)
T ss_pred CCCCC
Confidence 87743
No 467
>PRK08643 acetoin reductase; Validated
Probab=63.44 E-value=41 Score=27.84 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=43.8
Q ss_pred CCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CC
Q 026274 71 GANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DL 138 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~ 138 (241)
++.+|=.|+..| +|.. +++.|++|++++.++ +.++.+...+...+..+.+...|..+... ... -.
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNE--ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467787886655 3333 444588999999885 34444444444444455566666665421 001 13
Q ss_pred CCcEEEEcCC
Q 026274 139 NPNIILGADV 148 (241)
Q Consensus 139 ~fDlIl~~dv 148 (241)
+.|+++.+--
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 6788876543
No 468
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=63.43 E-value=18 Score=28.83 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcCcCCCCCcEEE
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~~~~~~fDlIl 144 (241)
....|++++=+|-| +| -++..+..+|++|+.+|.+|- .+++ +...+..+ ..+ .+ .-...|+++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi-~alq-----A~~dGf~v--~~~--~~-----a~~~adi~v 83 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI-RALQ-----AAMDGFEV--MTL--EE-----ALRDADIFV 83 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH-HHHH-----HHHTT-EE--E-H--HH-----HTTT-SEEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH-HHHH-----hhhcCcEe--cCH--HH-----HHhhCCEEE
Confidence 45688999988776 44 334445556999999999962 2332 22234432 211 11 123578888
Q ss_pred EcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEEeeccCchhHHHHHHHHcCCEEEEEecCCCCCCcccccccCCCeEEEE
Q 026274 145 GADVFYDASAFDDLFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAE 224 (241)
Q Consensus 145 ~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~i~~~~~~~p~~~~~~~~~~~~l~~ 224 (241)
.+----+.-..+. -+.|+ ++++++..-.....-.+..+ ++.+.+...+. |+.....++....++-
T Consensus 84 taTG~~~vi~~e~-----~~~mk---dgail~n~Gh~d~Eid~~~L-~~~~~~~~~v~------~~v~~y~l~~G~~i~l 148 (162)
T PF00670_consen 84 TATGNKDVITGEH-----FRQMK---DGAILANAGHFDVEIDVDAL-EANAVEREEVR------PQVDRYTLPDGRRIIL 148 (162)
T ss_dssp E-SSSSSSB-HHH-----HHHS----TTEEEEESSSSTTSBTHHHH-HTCTSEEEEEE------TTEEEEEETTSEEEEE
T ss_pred ECCCCccccCHHH-----HHHhc---CCeEEeccCcCceeEeeccc-cccCcEEEEcC------CCeeEEEeCCCCEEEE
Confidence 7522222111111 12343 45666654443343344444 44577766652 3344445554444444
Q ss_pred E
Q 026274 225 I 225 (241)
Q Consensus 225 i 225 (241)
+
T Consensus 149 L 149 (162)
T PF00670_consen 149 L 149 (162)
T ss_dssp E
T ss_pred E
Confidence 3
No 469
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.34 E-value=27 Score=29.33 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=44.1
Q ss_pred CCCCeEEEecCC-CCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--Cc------
Q 026274 69 FSGANVVELGAG-TSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------ 135 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~------ 135 (241)
.+++++|=.|+| ++-+|..+ ++.|++|++++.+..++.++.+.... +..+.+...|..+... ..
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---PEPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---CCCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999984 34444444 44589999999764223444443322 2234455566654321 00
Q ss_pred CCCCCcEEEEcCCc
Q 026274 136 FDLNPNIILGADVF 149 (241)
Q Consensus 136 ~~~~fDlIl~~dvl 149 (241)
.-.++|+++.+--+
T Consensus 82 ~~g~iD~li~nAG~ 95 (256)
T PRK07889 82 HVDGLDGVVHSIGF 95 (256)
T ss_pred HcCCCcEEEEcccc
Confidence 01368988765433
No 470
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=63.19 E-value=97 Score=26.53 Aligned_cols=105 Identities=24% Similarity=0.218 Sum_probs=59.0
Q ss_pred CeEEEecCCCCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcC----CceEEEEee----cCCCCc-CcC-CCCCc
Q 026274 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK----LNCRVMGLT----WGFLDA-SIF-DLNPN 141 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~----~~~~~~~l~----w~~~~~-~~~-~~~fD 141 (241)
..|+.||||.=.-..-+.. ...+...|++- |++++.=++.+..++ .+..+...| |.+... ..+ ....-
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 3699999996544443432 22345555554 467766555555432 223333333 332111 111 12455
Q ss_pred EEEEcCCcCCC--ccHHHHHHHHHHHhhcCCCeEEEEEeec
Q 026274 142 IILGADVFYDA--SAFDDLFATITYLLQSSPGSVFITTYHN 180 (241)
Q Consensus 142 lIl~~dvly~~--~~~~~ll~~~~~lL~~~~~~~~~~~~~~ 180 (241)
++++-.+++|. +....+++.+..+.. +|+.+++.+..
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~--~gs~l~~d~~~ 199 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSA--PGSRLAFDYVR 199 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCC--CCcEEEEEecc
Confidence 77777777664 467788888888754 67777776543
No 471
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=63.07 E-value=16 Score=32.80 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCCCCeEEEecCC-CCHHHHHHHHh-CC-EEEEEcCCCcHHHHHHHHH
Q 026274 68 RFSGANVVELGAG-TSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRR 112 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~la~~-g~-~V~~tD~~~~~~~l~~~~~ 112 (241)
...|.+|.=+||| .|+.++.-|+. |+ +++++|+++ +-++.+++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~--~Kl~~A~~ 228 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP--EKLELAKK 228 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH--HHHHHHHh
Confidence 4467889999998 88988888875 76 899999996 45655554
No 472
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=62.61 E-value=25 Score=28.19 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=43.6
Q ss_pred CeEEEecCCCCHHHHHHHHhC--CEEEEEcCCCcHHHHHHHHHHHHHcCC----ceEEEEeecCCCCc------CcC-CC
Q 026274 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL----NCRVMGLTWGFLDA------SIF-DL 138 (241)
Q Consensus 72 ~~VLElGcGtGl~sl~la~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~----~~~~~~l~w~~~~~------~~~-~~ 138 (241)
+.|+.||||.=..+.-+.... ..++=+|. |++++.-++.+..++. +.++...|..+... ..+ ..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~---p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL---PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE----HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC---HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 489999999887777777643 35555555 4677655555444422 23345555543210 111 12
Q ss_pred CCcEEEEcCCcCCC--ccHHHHHHH
Q 026274 139 NPNIILGADVFYDA--SAFDDLFAT 161 (241)
Q Consensus 139 ~fDlIl~~dvly~~--~~~~~ll~~ 161 (241)
.+-++++-.|++|. +....+++.
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHH
Confidence 44566666666653 334444443
No 473
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=62.45 E-value=8.2 Score=29.26 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=25.6
Q ss_pred CCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 71 GANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 71 ~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
.++|+=+||| .| .+...|++.|. +++.+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999998 66 67788888888 899999874
No 474
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.38 E-value=24 Score=30.72 Aligned_cols=40 Identities=33% Similarity=0.366 Sum_probs=26.8
Q ss_pred CeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHH
Q 026274 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n 113 (241)
++|.=||+|. | .++..+++.|.+|++.|.++ +.++.++..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~--~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME--GALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH--HHHHHHHHH
Confidence 3566778872 2 44555566688999999985 466655543
No 475
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=62.24 E-value=25 Score=30.66 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCCE-EEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~~-V~~tD~~~ 102 (241)
....+.+||=+|+| .|+..+.+|+ .|++ |++++.++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 34468888888875 4444444554 4787 99999885
No 476
>PRK07576 short chain dehydrogenase; Provisional
Probab=62.16 E-value=53 Score=27.55 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=43.2
Q ss_pred CCCCeEEEecCCCCHHHHH----HHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~----la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.+++++|=.|++.| +|.. ++..|++|++++.++ +-++.+.......+..+.+..+|..+... ...
T Consensus 7 ~~~k~ilItGasgg-IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 7 FAGKNVVVVGGTSG-INLGIAQAFARAGANVAVASRSQ--EKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788999986444 3443 444588999999885 34433333333333344556666654321 000
Q ss_pred CCCCcEEEEcC
Q 026274 137 DLNPNIILGAD 147 (241)
Q Consensus 137 ~~~fDlIl~~d 147 (241)
..++|+++.+-
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 13579987553
No 477
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.96 E-value=42 Score=33.20 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=57.6
Q ss_pred CeEEEecCCC-C-HHHHHHH-HhCCEEEEEcCCCcHHHHHHHHHHHHHc-------C-Cc-----eEEEEeecCCCCcCc
Q 026274 72 ANVVELGAGT-S-LPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMN-------K-LN-----CRVMGLTWGFLDASI 135 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la-~~g~~V~~tD~~~~~~~l~~~~~n~~~n-------~-~~-----~~~~~l~w~~~~~~~ 135 (241)
++|.=||+|+ | -++..+| ..|..|++.|.++ +.++.+...+... + .. .....+.........
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP--QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHh
Confidence 5689999995 3 3444455 6699999999995 6776665444321 1 10 000011111111111
Q ss_pred CCCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEE
Q 026274 136 FDLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFI 175 (241)
Q Consensus 136 ~~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~ 175 (241)
...|+|+=+ +..+.+.-..+++.+.+.++ +++++.
T Consensus 388 --~~aDlViEa-v~E~~~~K~~v~~~le~~~~--~~~ila 422 (708)
T PRK11154 388 --KHADVVIEA-VFEDLALKQQMVAEVEQNCA--PHTIFA 422 (708)
T ss_pred --ccCCEEeec-ccccHHHHHHHHHHHHhhCC--CCcEEE
Confidence 368888865 55666777899999999986 555443
No 478
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=61.93 E-value=24 Score=29.96 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=37.4
Q ss_pred HHHHHHhccCCCCCCeEEEecCCCCHHHHHHHHhCC-EEEEEcCCCcHHHHHHHHHHHHH
Q 026274 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM 116 (241)
Q Consensus 58 L~~~l~~~~~~~~~~~VLElGcGtGl~sl~la~~g~-~V~~tD~~~~~~~l~~~~~n~~~ 116 (241)
+.+-+.++........|.|+|-|.|-+.-.+...|+ +...++.+.. .++-++.-.++
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~R--Fip~LQ~L~EA 95 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTR--FIPGLQMLSEA 95 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccc--cChHHHHHhhc
Confidence 444555566666777899999999977777776665 5666666642 55444443333
No 479
>PRK07806 short chain dehydrogenase; Provisional
Probab=61.86 E-value=60 Score=26.63 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=35.6
Q ss_pred CCCCeEEEecCCCCHHHHHH----HHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCC
Q 026274 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~l----a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~ 131 (241)
.+++++|=.|+..| +|..+ ++.|++|++++.+.. ..++.+...++..+.++.+...|..+.
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~ 68 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKA-PRANKVVAEIEAAGGRASAVGADLTDE 68 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCch-HhHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 45788999997544 44443 345889999887642 233444333333344555566666553
No 480
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=61.47 E-value=68 Score=26.68 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=46.6
Q ss_pred CCCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------
Q 026274 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------ 136 (241)
.++++++|=.|++.|+- +..+++.|++|+++..+. ++.++.+...+...+.++.+...|..+... ...
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD-EEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35788999999877642 233455588888876654 234444444454445556666677665421 000
Q ss_pred CCCCcEEEEcCC
Q 026274 137 DLNPNIILGADV 148 (241)
Q Consensus 137 ~~~fDlIl~~dv 148 (241)
-.++|+++.+--
T Consensus 83 ~g~id~lv~~ag 94 (261)
T PRK08936 83 FGTLDVMINNAG 94 (261)
T ss_pred cCCCCEEEECCC
Confidence 136788875543
No 481
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.24 E-value=61 Score=26.28 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=44.8
Q ss_pred CCCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 70 ~~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
+.++||=.|+ +|.+|..+++ .|++|+++..+. ...++.+.......+.++.+...|..+... ... -
T Consensus 5 ~~~~vlItGa-sg~iG~~l~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (249)
T PRK12825 5 MGRVALVTGA-ARGLGRAIALRLARAGADVVVHYRSD-EEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERF 82 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHc
Confidence 4568888886 6667766665 378877755554 234555555555445556666666654321 000 1
Q ss_pred CCCcEEEEcCC
Q 026274 138 LNPNIILGADV 148 (241)
Q Consensus 138 ~~fDlIl~~dv 148 (241)
.++|.|+.+-.
T Consensus 83 ~~id~vi~~ag 93 (249)
T PRK12825 83 GRIDILVNNAG 93 (249)
T ss_pred CCCCEEEECCc
Confidence 36788875543
No 482
>PRK12743 oxidoreductase; Provisional
Probab=61.18 E-value=61 Score=26.94 Aligned_cols=77 Identities=12% Similarity=0.061 Sum_probs=45.6
Q ss_pred CCeEEEecCCCCHHHHHHHH----hCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------CC
Q 026274 71 GANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------DL 138 (241)
Q Consensus 71 ~~~VLElGcGtGl~sl~la~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~~ 138 (241)
+++||=.|++.| +|..+++ .|++|++++..+ .+.++.+...+...+.++.+...|..+... ... -.
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGFDIGITWHSD-EEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCC-hHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467888997655 4555444 488998886543 234454445555556666777777665421 000 13
Q ss_pred CCcEEEEcCCc
Q 026274 139 NPNIILGADVF 149 (241)
Q Consensus 139 ~fDlIl~~dvl 149 (241)
+.|+++.+--.
T Consensus 80 ~id~li~~ag~ 90 (256)
T PRK12743 80 RIDVLVNNAGA 90 (256)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 483
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=61.15 E-value=91 Score=25.55 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=41.0
Q ss_pred CCCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+- ...+++.|++|++++.+. ....+..+.+...|..+... ... -
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAET 74 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----------hhhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678888888776532 333445588999998872 11123345556666654321 000 1
Q ss_pred CCCcEEEEcCCcC
Q 026274 138 LNPNIILGADVFY 150 (241)
Q Consensus 138 ~~fDlIl~~dvly 150 (241)
.++|+++.+--..
T Consensus 75 ~~id~vi~~ag~~ 87 (252)
T PRK08220 75 GPLDVLVNAAGIL 87 (252)
T ss_pred CCCCEEEECCCcC
Confidence 3579988765443
No 484
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=60.68 E-value=47 Score=27.60 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=43.0
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|+..|+ ++..+++.|++|+++|.+...+..+. +...+..+.....|..+... ... -
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQ----VTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHH----HHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 567899999986553 33344456899999988752222222 22234445555566544221 001 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 84 ~~~D~li~~Ag~ 95 (253)
T PRK08993 84 GHIDILVNNAGL 95 (253)
T ss_pred CCCCEEEECCCC
Confidence 368988865433
No 485
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.65 E-value=23 Score=34.60 Aligned_cols=33 Identities=33% Similarity=0.348 Sum_probs=25.8
Q ss_pred CCCeEEEecCCCC--HHHHHHHHhCCEEEEEcCCC
Q 026274 70 SGANVVELGAGTS--LPGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 70 ~~~~VLElGcGtG--l~sl~la~~g~~V~~tD~~~ 102 (241)
.+++|+=+|+|.+ ..+..|++.|++|++.|-.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5789999999954 33566777899999998753
No 486
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=60.45 E-value=51 Score=29.15 Aligned_cols=57 Identities=4% Similarity=-0.105 Sum_probs=41.9
Q ss_pred CCCCCCeEEEecCCCCHHHHHHHHh-C--CEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEE
Q 026274 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (241)
Q Consensus 67 ~~~~~~~VLElGcGtGl~sl~la~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (241)
....+...+|.--|.|--|-.+... + .++++.|.++ .+++.+++.....+.++++.+
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~--~Ai~~a~~~l~~~~~r~~~v~ 79 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDP--QAIAIAKERLKEFDGRVTLVH 79 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCH--HHHHHHHHHhhccCCcEEEEe
Confidence 3445678999999988776666654 3 4799999995 699999988776655554444
No 487
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.41 E-value=27 Score=31.09 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCCCCCeEEEecCC-CCHHHHHHHH-hCC-EEEEEcCCCcHHHHHHH
Q 026274 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tGl~sl~la~-~g~-~V~~tD~~~~~~~l~~~ 110 (241)
....+.+||=+|+| .|++.+.+|+ .|+ +|+++|.++ +-++.+
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~--~~~~~~ 227 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP--DKFELA 227 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHH
Confidence 34568889888875 4444444554 488 799999985 344444
No 488
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=60.23 E-value=24 Score=31.47 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=24.7
Q ss_pred CCCCeEEEecCC-CCHHHHHHHH-hCCEEEEEcCCC
Q 026274 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (241)
Q Consensus 69 ~~~~~VLElGcG-tGl~sl~la~-~g~~V~~tD~~~ 102 (241)
..+.+||=.||| .|+..+.+|+ .|++|++++.++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367788888886 5556666665 488999888875
No 489
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.16 E-value=57 Score=26.68 Aligned_cols=78 Identities=13% Similarity=0.041 Sum_probs=44.3
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCcC--cC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~~--~~------~ 137 (241)
.+++++|=.|+..|+ +...+++.|++|++++.++ +-++.+...+.. +..+.+...|..+...- .. -
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE--EAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 456788888876543 2333455588999999985 234433333332 33455566665543210 00 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
..+|+|+.+-..
T Consensus 80 ~~~d~vi~~ag~ 91 (251)
T PRK07231 80 GSVDILVNNAGT 91 (251)
T ss_pred CCCCEEEECCCC
Confidence 268988876543
No 490
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=60.08 E-value=44 Score=31.68 Aligned_cols=98 Identities=22% Similarity=0.206 Sum_probs=52.5
Q ss_pred CeEEEecCCC-C-HHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHc-------C-Cc-----eEEEEeecCCCCcCcC
Q 026274 72 ANVVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------K-LN-----CRVMGLTWGFLDASIF 136 (241)
Q Consensus 72 ~~VLElGcGt-G-l~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n-------~-~~-----~~~~~l~w~~~~~~~~ 136 (241)
++|-=||+|+ | -++..+++.|.+|++.|.++ +.++.+..+++.+ + .. .....+.+.......
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~--e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l- 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA--EALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL- 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-
Confidence 4677788872 3 44555667799999999995 5776554433211 1 10 000001111111111
Q ss_pred CCCCcEEEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 137 DLNPNIILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 137 ~~~fDlIl~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
...|+|+-+ +......-..++..+..+++ ++. ++.+
T Consensus 83 -~~aDlVIEa-v~E~~~vK~~vf~~l~~~~~--~~~-Ilas 118 (503)
T TIGR02279 83 -ADAGLVIEA-IVENLEVKKALFAQLEELCP--ADT-IIAS 118 (503)
T ss_pred -CCCCEEEEc-CcCcHHHHHHHHHHHHhhCC--CCe-EEEE
Confidence 257888864 34445556667777777764 444 4443
No 491
>PRK12939 short chain dehydrogenase; Provisional
Probab=60.04 E-value=54 Score=26.80 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCCCeEEEecCCCCHHHHHHH----HhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcCC-----
Q 026274 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl~sl~la----~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~~----- 137 (241)
.+++++|=.|++ |.+|..++ +.|++|++++.++ +-++.+...++..+.++.+...|..+... ....
T Consensus 5 ~~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 5 LAGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLA--AEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457889988864 44455444 4588999998875 34444444443334456666667664321 0010
Q ss_pred -CCCcEEEEcC
Q 026274 138 -LNPNIILGAD 147 (241)
Q Consensus 138 -~~fDlIl~~d 147 (241)
.++|+|+.+-
T Consensus 82 ~~~id~vi~~a 92 (250)
T PRK12939 82 LGGLDGLVNNA 92 (250)
T ss_pred cCCCCEEEECC
Confidence 3688887654
No 492
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.94 E-value=57 Score=27.19 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred CCCeEEEecCCCCHH---HHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC-----CCC
Q 026274 70 SGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF-----DLN 139 (241)
Q Consensus 70 ~~~~VLElGcGtGl~---sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~-----~~~ 139 (241)
+++++|=.|++.|+- ...+++.|++|++++.++ +-++.+...+ ..+.++.+...|..+... ... -.+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA--EKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 567888888876642 333455699999999985 3444444333 223355566666655321 000 135
Q ss_pred CcEEEEcCC
Q 026274 140 PNIILGADV 148 (241)
Q Consensus 140 fDlIl~~dv 148 (241)
+|.++.+--
T Consensus 81 id~lv~~ag 89 (263)
T PRK09072 81 INVLINNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 788876643
No 493
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=59.94 E-value=22 Score=32.23 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=28.0
Q ss_pred CCCCCCeEEEecCC-CC-HHHHHHHHhCC-EEEEEcCCC
Q 026274 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (241)
Q Consensus 67 ~~~~~~~VLElGcG-tG-l~sl~la~~g~-~V~~tD~~~ 102 (241)
...++.+||=+||| .| .+...|++.|. +++++|.+.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34577899999999 45 56777777786 899999883
No 494
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.92 E-value=43 Score=29.30 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=51.6
Q ss_pred CeEEEecCC--CCHHHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEE-------EEeecCCCCcCcCCCCCcE
Q 026274 72 ANVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV-------MGLTWGFLDASIFDLNPNI 142 (241)
Q Consensus 72 ~~VLElGcG--tGl~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~-------~~l~w~~~~~~~~~~~fDl 142 (241)
.+|+=+|+| -|.++..+++.|.+|++...++. +. +..+++.+.. .........+ ....+|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~----~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~ 75 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY----EA----VRENGLQVDSVHGDFHLPPVQAYRSAE--DMPPCDW 75 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH----HH----HHhCCeEEEeCCCCeeecCceEEcchh--hcCCCCE
Confidence 578889988 34778888888999999988751 22 2233433211 0011111101 1246899
Q ss_pred EEEcCCcCCCccHHHHHHHHHHHhhcCCCeEEEEE
Q 026274 143 ILGADVFYDASAFDDLFATITYLLQSSPGSVFITT 177 (241)
Q Consensus 143 Il~~dvly~~~~~~~ll~~~~~lL~~~~~~~~~~~ 177 (241)
|+.+=--|. ...+++.+..+++ +++.++..
T Consensus 76 vilavK~~~---~~~~~~~l~~~~~--~~~~iv~l 105 (313)
T PRK06249 76 VLVGLKTTA---NALLAPLIPQVAA--PDAKVLLL 105 (313)
T ss_pred EEEEecCCC---hHhHHHHHhhhcC--CCCEEEEe
Confidence 887644443 3567777777775 45554433
No 495
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=59.86 E-value=63 Score=26.93 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=46.2
Q ss_pred CCCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHH-HcCCceEEEEeecCCCCc--CcC-----
Q 026274 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVMGLTWGFLDA--SIF----- 136 (241)
Q Consensus 68 ~~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~-~n~~~~~~~~l~w~~~~~--~~~----- 136 (241)
..+++++|=.|++.|+ +...+++.|++|+++.... .+.++.+.+.+. ..+.++.+...|..+... ...
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSN-VEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE 83 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3578899999988773 3444556699998886543 234444433333 234556666777655321 000
Q ss_pred -CCCCcEEEEcC
Q 026274 137 -DLNPNIILGAD 147 (241)
Q Consensus 137 -~~~fDlIl~~d 147 (241)
-.++|+++.+-
T Consensus 84 ~~g~id~lv~nA 95 (260)
T PRK08416 84 DFDRVDFFISNA 95 (260)
T ss_pred hcCCccEEEECc
Confidence 13689888654
No 496
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=59.61 E-value=25 Score=32.62 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=25.8
Q ss_pred CCCCCeEEEecCC-CCHH-HHHHHHhCCEEEEEcCCC
Q 026274 68 RFSGANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~-sl~la~~g~~V~~tD~~~ 102 (241)
...|++|+=+|+| .|.. +..+...|++|+++|.++
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3588999999998 4422 333334588999999996
No 497
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=59.52 E-value=19 Score=33.09 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCCCeEEEecCC-CCHHHHHH-HHhCCEEEEEcCCC
Q 026274 68 RFSGANVVELGAG-TSLPGLVA-AKVGSNVTLTDDSN 102 (241)
Q Consensus 68 ~~~~~~VLElGcG-tGl~sl~l-a~~g~~V~~tD~~~ 102 (241)
...|++|+=+|+| .|...... ...|++|+++|.++
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4689999999999 56443333 33588999999986
No 498
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=59.29 E-value=71 Score=27.64 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHH-cCCceEEEEeecCCCCcC------cCC-
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDAS------IFD- 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~-n~~~~~~~~l~w~~~~~~------~~~- 137 (241)
..++++|=-|+-.|+ ++-.+|+.|++|+++--+. +-|+.+.+.++. .+..+.+...|..+...- ...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~--~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARRE--DKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH--HHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 456788888987774 3455666799999999995 577777666654 467888888888776421 111
Q ss_pred -CCCcEEEEcCCc
Q 026274 138 -LNPNIILGADVF 149 (241)
Q Consensus 138 -~~fDlIl~~dvl 149 (241)
..+|+.|.+--+
T Consensus 82 ~~~IdvLVNNAG~ 94 (265)
T COG0300 82 GGPIDVLVNNAGF 94 (265)
T ss_pred CCcccEEEECCCc
Confidence 268998866433
No 499
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=59.28 E-value=28 Score=32.40 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCC-H-HHHHHHHhCCEEEEEcCCC
Q 026274 70 SGANVVELGAGTS-L-PGLVAAKVGSNVTLTDDSN 102 (241)
Q Consensus 70 ~~~~VLElGcGtG-l-~sl~la~~g~~V~~tD~~~ 102 (241)
.+++|+=+|+|.. + .+..+++.|++|+..|..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5789999999954 3 3445666799999998764
No 500
>PRK12937 short chain dehydrogenase; Provisional
Probab=59.26 E-value=69 Score=26.11 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=44.4
Q ss_pred CCCCeEEEecCCCCH---HHHHHHHhCCEEEEEcCCCcHHHHHHHHHHHHHcCCceEEEEeecCCCCc--CcC------C
Q 026274 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (241)
Q Consensus 69 ~~~~~VLElGcGtGl---~sl~la~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~~~~~~l~w~~~~~--~~~------~ 137 (241)
.+++++|=.|++.|+ ++..+++.|++|+++..+. +...+.+.+.....+.++.+...|..+... ... -
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGS-AAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC-HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 456789999986553 2333455588888887654 233444444444445556666666654321 000 1
Q ss_pred CCCcEEEEcCCc
Q 026274 138 LNPNIILGADVF 149 (241)
Q Consensus 138 ~~fDlIl~~dvl 149 (241)
.+.|+++.+--+
T Consensus 82 ~~id~vi~~ag~ 93 (245)
T PRK12937 82 GRIDVLVNNAGV 93 (245)
T ss_pred CCCCEEEECCCC
Confidence 257888765443
Done!