BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026279
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
+IK A+R KA ++HPD+N NKE AE KFKEV +YE + + K
Sbjct: 18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
E EI+ A++ A ++HPD+NQG+KE AEAKFKE+ +YE + +K
Sbjct: 17 EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
E EI+ A++ A ++HPD+NQG+KE AEAKFKE+ +YE + +K
Sbjct: 17 EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
E EI+ A++ A ++HPD+NQG+KE AEAKFKE+ +YE + +K
Sbjct: 17 EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
+IK A+R A +HPD+N NKE AE KFK V +YE + +K
Sbjct: 25 DIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 182 LDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
LD R+A +EA IK A+R A ++HPD+N NKE AE +FK+V +YE + +K
Sbjct: 15 LDVPRQAS-SEA-IKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
++ EIK A+R +A +HPD+N+ + AE KFKE+ +Y+ + RK
Sbjct: 16 SDEEIKRAYRRQALRYHPDKNK--EPGAEEKFKEIAEAYDVLSDPRK 60
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 195 IKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
IKTA+R A+++HPD ++ N AEAKFK++ ++E +K E++
Sbjct: 45 IKTAYRRLARKYHPDVSKEND--AEAKFKDLAEAWEVLKDEQR 85
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240
++A+IK A++ A+E+HPD+N+ AE +F ++ +YE + E K N
Sbjct: 30 SQADIKKAYKKLAREWHPDKNK--DPGAEDRFIQISKAYEILSNEEKRTN 77
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI 232
+E +IK AF A ++HPD+N+ AEAKF+E+ +YE +
Sbjct: 20 SERQIKKAFHKLAMKYHPDKNKSPD--AEAKFREIAEAYETL 59
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI 232
T+A+IK A+ + +HPD+N G+ EAAE +F + +Y +
Sbjct: 30 TQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVL 70
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 195 IKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
IKTA+R A+++HPD ++ + AEA+FKEV ++E + E++
Sbjct: 22 IKTAYRRLARKYHPDVSK--EPDAEARFKEVAEAWEVLSDEQR 62
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEV 225
T +IK ++R A ++HPD+N N EAA+ KFKE+
Sbjct: 30 TSDDIKKSYRKLALKYHPDKNPDNPEAAD-KFKEI 63
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
++ EIK A+ AK++HPD N+ + +A E KF ++ +YE + E K
Sbjct: 20 SQKEIKKAYYQLAKKYHPDTNKDDPKAKE-KFSQLAEAYEVLSDEVK 65
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
++ E+K A+R A +FHPD+N E +FK++ +YE + E+K
Sbjct: 21 SDNELKKAYRKMALKFHPDKNPDGAE----QFKQISQAYEVLSDEKK 63
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
T+ E+K A+R A ++HPD+N E KFK++ +YE + +K
Sbjct: 19 TQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKK 61
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 195 IKTAFRAKAKEFHPD--QNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240
+ A+RA A++ HPD +N+ K AE +F+ + +YE +K + N
Sbjct: 33 LAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTN 80
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
EI+ AF+ A + HPD+N N A F ++ +YE +K E
Sbjct: 18 EIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDE 58
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
EI+ AF+ A + HPD+N N A F ++ +YE +K E
Sbjct: 37 EIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDE 77
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
E E+K +R A ++HPD+ G+ E KFKE+ ++E + +K
Sbjct: 22 EQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILNDPQK 63
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
++ ++K A+R A +FHPD+N + A FK + +Y + K
Sbjct: 20 SDEDLKKAYRRLALKFHPDKN--HAPGATEAFKAIGTAYAVLSNPEK 64
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 181 GLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEA-----KFKEVMVSYEA 231
G D L AE F+ +A E HPD++ N +A E K KE++ + E+
Sbjct: 27 GCDELSSVEQILAE----FKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,010,226
Number of Sequences: 62578
Number of extensions: 241547
Number of successful extensions: 439
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 31
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)