Query 026279
Match_columns 241
No_of_seqs 250 out of 1721
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.8 8.6E-21 1.9E-25 177.4 7.3 63 173-240 3-65 (371)
2 KOG0713 Molecular chaperone (D 99.8 1.6E-19 3.4E-24 166.0 7.0 64 171-239 13-76 (336)
3 PRK14288 chaperone protein Dna 99.7 1.6E-17 3.4E-22 156.0 6.7 61 174-239 3-63 (369)
4 PRK14296 chaperone protein Dna 99.7 4.8E-17 1E-21 153.0 6.7 60 174-239 4-63 (372)
5 PRK14279 chaperone protein Dna 99.7 9E-17 2E-21 152.0 6.9 61 174-239 9-69 (392)
6 KOG0712 Molecular chaperone (D 99.7 1E-16 2.2E-21 148.4 6.3 59 173-239 3-61 (337)
7 PRK14286 chaperone protein Dna 99.7 1.3E-16 2.8E-21 150.0 7.0 61 174-239 4-64 (372)
8 smart00271 DnaJ DnaJ molecular 99.7 3E-16 6.5E-21 109.7 7.0 60 174-237 1-60 (60)
9 PF00226 DnaJ: DnaJ domain; I 99.7 2.5E-16 5.4E-21 111.9 6.4 61 175-239 1-61 (64)
10 PRK14282 chaperone protein Dna 99.6 1.9E-16 4E-21 148.7 7.2 62 174-239 4-65 (369)
11 PRK14277 chaperone protein Dna 99.6 4.1E-16 9E-21 147.2 7.2 61 174-239 5-65 (386)
12 PTZ00037 DnaJ_C chaperone prot 99.6 4E-16 8.7E-21 149.0 6.6 59 172-239 26-84 (421)
13 PRK14285 chaperone protein Dna 99.6 4.6E-16 9.9E-21 146.0 6.8 61 174-239 3-63 (365)
14 cd06257 DnaJ DnaJ domain or J- 99.6 1E-15 2.3E-20 105.0 6.8 55 175-234 1-55 (55)
15 KOG0716 Molecular chaperone (D 99.6 4.7E-16 1E-20 139.5 6.1 62 173-239 30-91 (279)
16 KOG0717 Molecular chaperone (D 99.6 5E-16 1.1E-20 147.5 6.5 65 171-239 5-69 (508)
17 PRK14295 chaperone protein Dna 99.6 6.1E-16 1.3E-20 146.2 6.8 61 174-239 9-69 (389)
18 KOG0691 Molecular chaperone (D 99.6 7.7E-16 1.7E-20 140.8 6.8 62 173-239 4-65 (296)
19 PRK14283 chaperone protein Dna 99.6 7.4E-16 1.6E-20 145.1 6.7 61 173-239 4-64 (378)
20 PRK14297 chaperone protein Dna 99.6 9.5E-16 2.1E-20 144.4 7.3 61 174-239 4-64 (380)
21 PRK14294 chaperone protein Dna 99.6 9.1E-16 2E-20 143.9 7.1 61 174-239 4-64 (366)
22 PRK14287 chaperone protein Dna 99.6 8.9E-16 1.9E-20 144.3 7.0 60 174-239 4-63 (371)
23 PRK14299 chaperone protein Dna 99.6 9.7E-16 2.1E-20 139.7 6.9 60 174-239 4-63 (291)
24 PRK14301 chaperone protein Dna 99.6 1.1E-15 2.3E-20 143.9 7.2 61 174-239 4-64 (373)
25 PRK14298 chaperone protein Dna 99.6 1.1E-15 2.5E-20 143.9 6.9 60 174-239 5-64 (377)
26 PRK10767 chaperone protein Dna 99.6 1.5E-15 3.2E-20 142.5 7.2 61 174-239 4-64 (371)
27 PRK14276 chaperone protein Dna 99.6 1.3E-15 2.9E-20 143.5 6.8 60 174-239 4-63 (380)
28 PRK14284 chaperone protein Dna 99.6 1.3E-15 2.9E-20 144.0 6.8 60 175-239 2-61 (391)
29 PRK14278 chaperone protein Dna 99.6 1.5E-15 3.3E-20 143.0 6.7 60 174-239 3-62 (378)
30 PRK14281 chaperone protein Dna 99.6 1.8E-15 4E-20 143.3 6.8 61 174-239 3-63 (397)
31 PRK14290 chaperone protein Dna 99.6 2.2E-15 4.8E-20 141.3 7.0 62 174-239 3-64 (365)
32 PRK14291 chaperone protein Dna 99.6 1.8E-15 3.9E-20 142.7 6.3 60 174-239 3-62 (382)
33 PRK14280 chaperone protein Dna 99.6 2.3E-15 5.1E-20 141.6 6.7 60 174-239 4-63 (376)
34 PRK14289 chaperone protein Dna 99.5 6.4E-15 1.4E-19 139.0 7.2 61 174-239 5-65 (386)
35 PRK10266 curved DNA-binding pr 99.5 7E-15 1.5E-19 134.8 6.6 61 173-239 3-63 (306)
36 KOG0715 Molecular chaperone (D 99.5 7.1E-15 1.5E-19 134.2 6.5 60 174-239 43-102 (288)
37 TIGR02349 DnaJ_bact chaperone 99.5 1E-14 2.2E-19 136.0 6.2 59 175-239 1-59 (354)
38 PRK14292 chaperone protein Dna 99.5 1.3E-14 2.8E-19 136.2 6.8 60 174-239 2-61 (371)
39 PRK14300 chaperone protein Dna 99.5 1.6E-14 3.5E-19 135.8 6.4 60 174-239 3-62 (372)
40 COG2214 CbpA DnaJ-class molecu 99.5 3E-14 6.5E-19 119.1 7.0 64 172-239 4-67 (237)
41 PRK14293 chaperone protein Dna 99.5 3.6E-14 7.8E-19 133.5 6.5 60 174-239 3-62 (374)
42 PTZ00341 Ring-infected erythro 99.5 5.3E-14 1.2E-18 143.6 7.6 64 170-239 569-632 (1136)
43 KOG0718 Molecular chaperone (D 99.5 6.6E-14 1.4E-18 133.4 6.3 63 173-239 8-72 (546)
44 KOG0721 Molecular chaperone (D 99.4 9.4E-14 2E-18 121.5 5.9 62 174-240 99-160 (230)
45 KOG0719 Molecular chaperone (D 99.4 1.1E-13 2.3E-18 122.4 5.5 62 174-239 14-76 (264)
46 PRK05014 hscB co-chaperone Hsc 99.4 4.7E-13 1E-17 113.8 7.1 63 175-239 2-68 (171)
47 PRK01356 hscB co-chaperone Hsc 99.4 7.1E-13 1.5E-17 112.3 7.0 64 174-239 2-67 (166)
48 PHA03102 Small T antigen; Revi 99.4 7.3E-13 1.6E-17 111.0 6.0 60 174-240 5-64 (153)
49 PRK00294 hscB co-chaperone Hsc 99.4 1.8E-12 3.8E-17 110.6 7.5 65 173-239 3-71 (173)
50 PTZ00100 DnaJ chaperone protei 99.3 1.9E-12 4.1E-17 103.8 6.2 53 172-233 63-115 (116)
51 PRK03578 hscB co-chaperone Hsc 99.3 2.9E-12 6.3E-17 109.5 7.6 64 174-239 6-73 (176)
52 PRK09430 djlA Dna-J like membr 99.3 1.9E-12 4.2E-17 117.0 6.0 61 171-235 197-263 (267)
53 TIGR03835 termin_org_DnaJ term 99.3 2.3E-12 4.9E-17 129.3 6.8 60 174-239 2-61 (871)
54 KOG0624 dsRNA-activated protei 99.3 2.4E-11 5.2E-16 113.5 9.7 64 173-240 393-458 (504)
55 KOG0720 Molecular chaperone (D 99.2 3.2E-11 6.9E-16 115.1 5.4 62 172-239 233-294 (490)
56 KOG0722 Molecular chaperone (D 99.1 2.1E-11 4.6E-16 109.3 3.2 62 172-239 31-92 (329)
57 KOG0714 Molecular chaperone (D 99.1 3.3E-11 7.2E-16 105.6 4.4 63 174-240 3-65 (306)
58 KOG0550 Molecular chaperone (D 99.1 3.2E-11 7E-16 114.2 4.4 65 171-239 370-434 (486)
59 PRK01773 hscB co-chaperone Hsc 99.1 3.3E-10 7.1E-15 96.7 7.3 65 173-239 1-69 (173)
60 KOG1150 Predicted molecular ch 99.0 3.5E-10 7.6E-15 98.4 6.1 62 173-238 52-113 (250)
61 PHA02624 large T antigen; Prov 99.0 5.6E-10 1.2E-14 110.7 6.3 60 173-239 10-69 (647)
62 COG5407 SEC63 Preprotein trans 98.9 7.9E-10 1.7E-14 105.7 4.3 63 174-240 98-164 (610)
63 TIGR00714 hscB Fe-S protein as 98.9 5E-09 1.1E-13 88.0 6.8 51 189-239 2-56 (157)
64 KOG1789 Endocytosis protein RM 98.6 4.2E-08 9.2E-13 101.4 6.0 63 168-235 1275-1338(2235)
65 COG5269 ZUO1 Ribosome-associat 98.3 7E-07 1.5E-11 81.2 4.3 68 170-239 39-108 (379)
66 KOG0568 Molecular chaperone (D 98.2 1.5E-06 3.3E-11 77.6 4.7 56 173-234 46-102 (342)
67 KOG0723 Molecular chaperone (D 97.9 2E-05 4.3E-10 62.4 5.0 56 171-235 53-108 (112)
68 KOG3192 Mitochondrial J-type c 97.5 0.00014 3E-09 61.4 4.6 66 172-239 6-75 (168)
69 COG1076 DjlA DnaJ-domain-conta 96.9 0.00067 1.5E-08 57.7 2.9 55 174-232 113-173 (174)
70 KOG0431 Auxilin-like protein a 96.0 0.011 2.4E-07 57.7 5.2 44 190-233 400-449 (453)
71 COG1076 DjlA DnaJ-domain-conta 95.7 0.0052 1.1E-07 52.2 1.8 62 176-239 3-68 (174)
72 PF03656 Pam16: Pam16; InterP 95.4 0.028 6.2E-07 45.9 5.0 57 170-235 54-110 (127)
73 PF13446 RPT: A repeated domai 92.7 0.26 5.6E-06 34.7 4.7 30 171-204 2-31 (62)
74 PF09333 ATG_C: ATG C terminal 80.4 2.1 4.6E-05 33.1 3.4 36 24-59 49-86 (98)
75 CHL00008 petG cytochrome b6/f 78.1 2.2 4.9E-05 27.6 2.3 21 33-53 9-32 (37)
76 PRK00665 petG cytochrome b6-f 77.9 2.2 4.8E-05 27.6 2.3 21 33-53 9-32 (37)
77 PF14687 DUF4460: Domain of un 77.3 4.6 0.0001 32.2 4.5 47 190-236 6-55 (112)
78 PF02529 PetG: Cytochrome B6-F 72.5 3.2 6.8E-05 27.0 2.0 21 33-53 9-32 (37)
79 PF11240 DUF3042: Protein of u 65.7 7.3 0.00016 27.4 2.8 24 24-47 2-25 (54)
80 PF06724 DUF1206: Domain of Un 52.8 13 0.00029 26.7 2.5 27 29-55 44-70 (73)
81 PF07439 DUF1515: Protein of u 52.5 16 0.00035 29.3 3.0 23 26-48 75-97 (112)
82 PRK12585 putative monovalent c 44.6 1.7E+02 0.0036 25.8 8.3 7 114-120 159-165 (197)
83 KOG4631 NADH:ubiquinone oxidor 41.5 21 0.00045 27.9 2.0 23 25-47 64-86 (100)
84 PF14880 COX14: Cytochrome oxi 41.0 1.2E+02 0.0027 21.1 6.2 16 32-47 16-31 (59)
85 TIGR02811 formate_TAT formate 40.1 23 0.0005 25.6 2.1 22 24-45 12-33 (66)
86 PF08122 NDUF_B12: NADH-ubiqui 37.6 19 0.00042 25.3 1.3 20 23-42 24-43 (57)
87 PF07709 SRR: Seven Residue Re 36.8 28 0.0006 17.6 1.4 13 221-233 2-14 (14)
88 KOG4112 Signal peptidase subun 35.8 56 0.0012 25.7 3.6 26 31-56 30-55 (101)
89 PF01484 Col_cuticle_N: Nemato 31.9 41 0.00088 22.3 2.1 36 30-65 4-39 (53)
90 KOG3442 Uncharacterized conser 31.8 52 0.0011 27.1 3.0 40 170-213 55-94 (132)
91 PF09163 Form-deh_trans: Forma 30.8 57 0.0012 22.0 2.6 18 24-41 9-26 (44)
92 PRK13471 F0F1 ATP synthase sub 28.5 1.4E+02 0.0031 22.7 4.8 33 27-59 15-47 (85)
93 PRK01844 hypothetical protein; 28.4 70 0.0015 23.8 2.9 19 30-48 7-25 (72)
94 COG2879 Uncharacterized small 27.7 1E+02 0.0022 22.5 3.6 28 198-228 27-54 (65)
95 PF12434 Malate_DH: Malate deh 25.7 76 0.0017 19.3 2.2 17 191-207 9-25 (28)
96 PF08802 CytB6-F_Fe-S: Cytochr 25.1 1.1E+02 0.0023 20.2 3.0 20 28-47 10-29 (39)
97 PRK00523 hypothetical protein; 24.5 84 0.0018 23.4 2.8 18 31-48 9-26 (72)
98 PRK07159 F0F1 ATP synthase sub 24.4 1.6E+02 0.0036 23.1 4.6 32 27-59 31-62 (100)
99 PF14654 Epiglycanin_C: Mucin, 24.1 1.3E+02 0.0028 23.8 3.9 26 18-43 6-31 (106)
100 TIGR03322 alt_F1F0_F0_C altern 24.0 2E+02 0.0043 22.0 4.8 32 28-59 10-41 (86)
101 PHA01757 hypothetical protein 23.2 1.1E+02 0.0024 23.5 3.2 21 30-50 9-29 (98)
102 PRK13469 F0F1 ATP synthase sub 23.2 1.9E+02 0.0042 21.5 4.6 32 27-59 10-41 (79)
103 TIGR03180 UraD_2 OHCU decarbox 22.8 2.8E+02 0.0061 23.2 6.0 13 218-230 92-104 (158)
104 PRK11677 hypothetical protein; 22.7 84 0.0018 25.9 2.8 19 30-48 3-21 (134)
105 KOG3491 Predicted membrane pro 22.4 75 0.0016 22.9 2.1 31 21-54 31-61 (65)
106 PF11511 RhodobacterPufX: Intr 22.4 1E+02 0.0022 22.6 2.8 14 35-48 36-49 (67)
107 PRK13798 putative OHCU decarbo 22.4 2.8E+02 0.0061 23.4 6.0 30 201-230 65-109 (166)
108 COG4575 ElaB Uncharacterized c 22.3 55 0.0012 26.0 1.5 13 31-43 86-98 (104)
109 COG2959 HemX Uncharacterized e 22.2 1.1E+02 0.0023 29.7 3.7 36 21-56 26-62 (391)
110 PF13121 DUF3976: Domain of un 22.0 99 0.0022 20.2 2.4 22 22-43 16-37 (41)
111 PF08447 PAS_3: PAS fold; Int 21.8 29 0.00063 24.4 -0.1 28 174-209 6-34 (91)
112 PRK05880 F0F1 ATP synthase sub 21.8 2.3E+02 0.005 21.4 4.8 33 27-59 8-40 (81)
113 PRK09400 secE preprotein trans 21.1 67 0.0014 23.0 1.7 25 21-45 32-56 (61)
114 PF11190 DUF2976: Protein of u 20.7 2.5E+02 0.0055 21.5 4.8 45 25-69 17-61 (87)
115 PRK06876 F0F1 ATP synthase sub 20.6 2.6E+02 0.0057 20.9 4.8 33 27-59 7-39 (78)
116 MTH00222 ATP9 ATP synthase F0 20.3 2.2E+02 0.0048 21.3 4.4 30 27-57 8-37 (77)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.6e-21 Score=177.41 Aligned_cols=63 Identities=43% Similarity=0.713 Sum_probs=59.1
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
..|||+||||+++| |.+|||+|||+||++||||+|+++++ |+++|++|++||+||+||++|+.
T Consensus 3 ~~dyYeiLGV~k~A----s~~EIKkAYRkLA~kyHPD~n~g~~~-AeeKFKEI~eAYEVLsD~eKRa~ 65 (371)
T COG0484 3 KRDYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNPGDKE-AEEKFKEINEAYEVLSDPEKRAA 65 (371)
T ss_pred ccchhhhcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhCCHHHHHH
Confidence 36999999999999 99999999999999999999997655 99999999999999999999974
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-19 Score=166.02 Aligned_cols=64 Identities=33% Similarity=0.593 Sum_probs=60.4
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+|||+||||+.+| +..|||+|||+||++||||||++++. |.++|++|+.||+||+||.+|.
T Consensus 13 ~~~rDfYelLgV~k~A----sd~eIKkAYRKLALk~HPDkNpddp~-A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNA----SDQEIKKAYRKLALKYHPDKNPDDPN-ANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hcCCCHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 3457999999999999 99999999999999999999999876 9999999999999999999985
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.6e-17 Score=156.00 Aligned_cols=61 Identities=34% Similarity=0.626 Sum_probs=57.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+||++||||+|+.+.+ |+++|++|++||+||+||.+|.
T Consensus 3 ~dyY~vLgv~~~A----s~~eIkkayrkla~k~HPD~~~~~~~-a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHS----NQETIKKSYRKLALKYHPDRNAGDKE-AEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCccH-HHHHHHHHHHHHHHhccHHHHH
Confidence 6999999999999 99999999999999999999986544 8999999999999999999985
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.8e-17 Score=152.96 Aligned_cols=60 Identities=32% Similarity=0.535 Sum_probs=56.3
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+||++||||+|++ ..|+++|++|++||+||+||.+|.
T Consensus 4 ~dyY~~Lgv~~~a----~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 4 KDYYEVLGVSKTA----SEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhh
Confidence 6999999999999 99999999999999999999975 348999999999999999999985
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9e-17 Score=152.03 Aligned_cols=61 Identities=34% Similarity=0.559 Sum_probs=57.4
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+||++||||+|+++++ |+++|++|++||+||+||.+|.
T Consensus 9 ~Dyy~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 9 KDFYKELGVSSDA----SAEEIKKAYRKLARELHPDANPGDPA-AEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCChH-HHHHHHHHHHHHHHhcchhhhh
Confidence 6999999999999 99999999999999999999986544 8999999999999999999995
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-16 Score=148.40 Aligned_cols=59 Identities=37% Similarity=0.610 Sum_probs=56.4
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+|+||||+++| |.+|||+|||+||++||||||++ +.++|++|..||+||+||++|.
T Consensus 3 ~~~~y~il~v~~~A----s~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 3 NTKLYDILGVSPDA----SEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred ccccceeeccCCCc----CHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHH
Confidence 46899999999999 99999999999999999999998 7899999999999999999985
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.3e-16 Score=149.98 Aligned_cols=61 Identities=41% Similarity=0.750 Sum_probs=57.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+||++||||+|+++.+ |+++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 4 RSYYDILGVSKSA----NDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchH-HHHHHHHHHHHHHHhccHHHHH
Confidence 6999999999999 99999999999999999999986544 8999999999999999999985
No 8
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.65 E-value=3e-16 Score=109.70 Aligned_cols=60 Identities=43% Similarity=0.715 Sum_probs=54.4
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhh
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~k 237 (241)
.+||+||||++++ +.++||++|+++++++|||++++....+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~----~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDA----SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 3799999999998 99999999999999999999986445589999999999999999853
No 9
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.65 E-value=2.5e-16 Score=111.94 Aligned_cols=61 Identities=34% Similarity=0.658 Sum_probs=56.7
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
++|+||||++++ +.++|+++|+++++++|||++..+...+.+.|..|++||++|+||.+|.
T Consensus 1 ~~y~iLgl~~~~----~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDA----SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTS----SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCC----CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999 9999999999999999999988765558999999999999999999885
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.9e-16 Score=148.69 Aligned_cols=62 Identities=39% Similarity=0.680 Sum_probs=57.8
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+||++||||+|+.+...|+++|++|++||++|+||.+|.
T Consensus 4 ~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 4 KDYYEILGVSRNA----TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 6999999999999 9999999999999999999998654458999999999999999999985
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=4.1e-16 Score=147.17 Aligned_cols=61 Identities=49% Similarity=0.778 Sum_probs=57.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus 5 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 5 KDYYEILGVDRNA----TEEEIKKAYRRLAKKYHPDLNPGDKE-AEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCchH-HHHHHHHHHHHHHHhCCHHHHH
Confidence 6999999999999 99999999999999999999986544 8899999999999999999985
No 12
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.62 E-value=4e-16 Score=148.97 Aligned_cols=59 Identities=36% Similarity=0.521 Sum_probs=54.9
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...|||+||||+++| |.+|||+|||+||++||||+|++ .++|++|++||+||+||.+|.
T Consensus 26 ~~~d~Y~vLGV~~~A----s~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 26 DNEKLYEVLNLSKDC----TTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred cchhHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHH
Confidence 357999999999999 99999999999999999999863 489999999999999999985
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.6e-16 Score=145.96 Aligned_cols=61 Identities=43% Similarity=0.708 Sum_probs=57.0
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.++||+|||+|+++||||+|+++.+ |.++|++|++||++|+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eIk~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGA----SKDEIKKAYRKIAIKYHPDKNKGNKE-AESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHcCcchhH
Confidence 5999999999999 99999999999999999999987544 7899999999999999999985
No 14
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.62 E-value=1e-15 Score=105.03 Aligned_cols=55 Identities=38% Similarity=0.672 Sum_probs=51.2
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 026279 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQ 234 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~d 234 (241)
+||+||||++++ |.++|+++|++|++++|||++++. +.+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~----~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDA----SDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 689999999998 999999999999999999999865 4589999999999999986
No 15
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.7e-16 Score=139.53 Aligned_cols=62 Identities=40% Similarity=0.605 Sum_probs=58.8
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..++|+||||++++ |.++||++||+|+++||||+++++++ +..+|++||+||.||+||.+|.
T Consensus 30 ~~~LYdVLgl~k~a----t~d~IKKaYR~L~~k~HPD~~gd~P~-~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTA----TKDEIKKAYRKLALKYHPDKNGDNPE-ATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred hhHHHHHhCCCccc----chHHHHHHHHHHHHHhCCCcCCCCch-hHHHHHHHHHHHHHhcChhhhh
Confidence 46899999999999 99999999999999999999999865 8999999999999999999986
No 16
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5e-16 Score=147.54 Aligned_cols=65 Identities=29% Similarity=0.553 Sum_probs=61.3
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.....||+||||..++ +..+||++||+|||+||||+|++..+.|++.|+.|+.||+||+||..|+
T Consensus 5 ~~~~c~YE~L~v~~~a----~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDA----DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhhhHHHHHhcccccC----CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 3457899999999999 9999999999999999999999988889999999999999999999885
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=6.1e-16 Score=146.25 Aligned_cols=61 Identities=44% Similarity=0.770 Sum_probs=56.9
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus 9 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 9 KDYYKVLGVPKDA----TEAEIKKAYRKLAREYHPDANKGDAK-AEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCchh-HHHHHHHHHHHHHHHCchhhHH
Confidence 5999999999999 99999999999999999999986543 8999999999999999999885
No 18
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.7e-16 Score=140.80 Aligned_cols=62 Identities=39% Similarity=0.673 Sum_probs=59.7
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..|||+||||++++ |..+|++|||.++++||||||++++. |.++|+.|.+||+||+|+.+|.
T Consensus 4 ~~dyY~lLgi~~~a----t~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDA----TDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 47999999999999 99999999999999999999999988 9999999999999999999985
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.4e-16 Score=145.05 Aligned_cols=61 Identities=39% Similarity=0.665 Sum_probs=56.8
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..|||+||||+++| |.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|.
T Consensus 4 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 4 KRDYYEVLGVDRNA----DKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred cCChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHH
Confidence 46999999999999 99999999999999999999975 348999999999999999999985
No 20
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=9.5e-16 Score=144.42 Aligned_cols=61 Identities=46% Similarity=0.768 Sum_probs=57.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.++||+|||+||++||||+++++.+ |+++|++|++||++|+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 4 KDYYEVLGLEKGA----SDDEIKKAFRKLAIKYHPDKNKGNKE-AEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHhcCHhhhC
Confidence 5999999999999 99999999999999999999986544 8999999999999999999986
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=9.1e-16 Score=143.90 Aligned_cols=61 Identities=41% Similarity=0.686 Sum_probs=57.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+||++||||+++++.+ ++++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 4 RDYYEILGVTRDA----SEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CChHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCchH-HHHHHHHHHHHHHHhccHHHHH
Confidence 6999999999999 99999999999999999999986544 7899999999999999999985
No 22
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=8.9e-16 Score=144.29 Aligned_cols=60 Identities=40% Similarity=0.681 Sum_probs=56.0
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 4 RDYYEVLGVDRNA----SVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHH
Confidence 5999999999999 99999999999999999999974 347899999999999999999985
No 23
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=9.7e-16 Score=139.67 Aligned_cols=60 Identities=35% Similarity=0.635 Sum_probs=55.9
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.++||+|||+||++||||++++ ..++++|++|++||++|+||.+|.
T Consensus 4 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~ 63 (291)
T PRK14299 4 KDYYAILGVPKNA----SQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRR 63 (291)
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHH
Confidence 6999999999999 99999999999999999999974 347899999999999999999884
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.1e-15 Score=143.89 Aligned_cols=61 Identities=44% Similarity=0.695 Sum_probs=57.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus 4 ~~~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 4 RDYYEVLGVSRDA----SEDEIKKAYRKLALQYHPDRNPDNPE-AEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CChHHhcCCCCCC----CHHHHHHHHHHHHHHhCCCcCCCChH-HHHHHHHHHHHHHHhcchhhhh
Confidence 6999999999999 99999999999999999999987544 8899999999999999999985
No 25
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.1e-15 Score=143.88 Aligned_cols=60 Identities=35% Similarity=0.615 Sum_probs=56.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.+|||+|||+||++||||+|++ ..++++|++|++||++|+||.+|.
T Consensus 5 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 5 RDYYEILGLSKDA----SVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCHHHhhCCCCCC----CHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhh
Confidence 6999999999999 99999999999999999999974 347899999999999999999985
No 26
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.5e-15 Score=142.55 Aligned_cols=61 Identities=46% Similarity=0.751 Sum_probs=57.0
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.++||+|||+||++||||+|+++.. |+++|++|++||++|+||.+|.
T Consensus 4 ~d~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 4 RDYYEVLGVSRNA----SEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCcHH-HHHHHHHHHHHHHHhcchhhhh
Confidence 6999999999999 99999999999999999999986544 8899999999999999999885
No 27
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.3e-15 Score=143.49 Aligned_cols=60 Identities=37% Similarity=0.632 Sum_probs=56.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+||++||||+|++ ..|+++|++|++||++|+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 4 TEYYDRLGVSKDA----SQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhh
Confidence 6999999999999 99999999999999999999975 237899999999999999999985
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.3e-15 Score=143.95 Aligned_cols=60 Identities=40% Similarity=0.718 Sum_probs=56.4
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
|||+||||+++| |.++||+|||+||++||||+|+++.. |+++|++|++||++|+||.+|.
T Consensus 2 d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTA----SPEEIKKAYRKLAVKYHPDKNPGDAE-AEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 899999999999 99999999999999999999987544 8999999999999999999885
No 29
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.5e-15 Score=143.02 Aligned_cols=60 Identities=43% Similarity=0.708 Sum_probs=56.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.++||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNA----SDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCC----CHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhh
Confidence 5899999999999 99999999999999999999984 348899999999999999999985
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.8e-15 Score=143.31 Aligned_cols=61 Identities=44% Similarity=0.689 Sum_probs=56.9
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+||++||||+++++.+ |+++|++|++||++|+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSA----DKDEIKKAYRKLALKYHPDKNPDNKE-AEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCchH-HHHHHHHHHHHHHHhhhhhhhh
Confidence 5999999999999 99999999999999999999986544 7899999999999999999885
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.2e-15 Score=141.26 Aligned_cols=62 Identities=44% Similarity=0.730 Sum_probs=58.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.+|||+|||+|+++||||+++++.+.|.++|++|++||++|+||.+|.
T Consensus 3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNA----SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 5999999999999 9999999999999999999998776568999999999999999999885
No 32
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.8e-15 Score=142.71 Aligned_cols=60 Identities=38% Similarity=0.657 Sum_probs=56.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+||++||||+|++ +.++++|++|++||++|+||.+|.
T Consensus 3 ~d~Y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNA----TQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHH
Confidence 5999999999999 99999999999999999999976 337899999999999999999985
No 33
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.3e-15 Score=141.64 Aligned_cols=60 Identities=38% Similarity=0.698 Sum_probs=56.0
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||+++| |.++||+|||+||++||||++++ ..|+++|++|++||++|+||.+|.
T Consensus 4 ~~~y~iLgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 4 RDYYEVLGVSKSA----SKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHH
Confidence 5999999999999 99999999999999999999975 237899999999999999999985
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=6.4e-15 Score=138.98 Aligned_cols=61 Identities=44% Similarity=0.722 Sum_probs=57.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.+|||+|||+||++||||+++++.+ |.++|++|++||++|+||.+|.
T Consensus 5 ~~~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 5 RDYYEVLGVSKTA----TVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 6999999999999 99999999999999999999987654 8999999999999999999885
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.54 E-value=7e-15 Score=134.83 Aligned_cols=61 Identities=34% Similarity=0.619 Sum_probs=56.2
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..|||+||||++++ |.++||+|||+||++||||++++. .++++|++|++||++|+||.+|.
T Consensus 3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~k~HPD~~~~~--~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 3 LKDYYAIMGVKPTD----DLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred cCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhhhHHHHH
Confidence 36999999999999 999999999999999999998752 48999999999999999999884
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.1e-15 Score=134.22 Aligned_cols=60 Identities=45% Similarity=0.687 Sum_probs=56.9
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |..|||+||++||++||||.|.+. .|.++|++|.+||++|+|+.+|.
T Consensus 43 ~d~Y~vLgv~~~A----t~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 43 EDYYKVLGVSRNA----TLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred cchhhhhCcCCCC----CHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHH
Confidence 4999999999999 999999999999999999999886 48999999999999999999985
No 37
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.53 E-value=1e-14 Score=136.02 Aligned_cols=59 Identities=41% Similarity=0.705 Sum_probs=54.7
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
|||+||||++++ |.++||+|||+||++||||+++. ..+.++|++|++||++|+|+.+|.
T Consensus 1 d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHH
Confidence 699999999999 99999999999999999999973 337899999999999999999885
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.3e-14 Score=136.19 Aligned_cols=60 Identities=32% Similarity=0.592 Sum_probs=55.9
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+|+++||||++++ ..+.++|++|++||++|+||.+|.
T Consensus 2 ~d~y~~Lgv~~~a----~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 2 MDYYELLGVSRTA----SADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence 5899999999999 99999999999999999999974 348899999999999999999885
No 39
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.6e-14 Score=135.81 Aligned_cols=60 Identities=35% Similarity=0.686 Sum_probs=55.6
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.+|||+|||+|+++||||++++ ..++++|++|++||++|+||.+|.
T Consensus 3 ~~~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTA----SQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhh
Confidence 5999999999999 99999999999999999999874 237889999999999999999885
No 40
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3e-14 Score=119.11 Aligned_cols=64 Identities=36% Similarity=0.609 Sum_probs=58.9
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+||+||||++++ +..+|+++||+++++||||+++.+...+.++|+.|++||++|+|+.+|.
T Consensus 4 ~~~~~y~iLgv~~~a----s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNA----SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 457999999999999 9999999999999999999999765458999999999999999999885
No 41
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.6e-14 Score=133.47 Aligned_cols=60 Identities=33% Similarity=0.625 Sum_probs=55.7
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+|+++||||++++ ..++++|+.|++||++|+||.+|.
T Consensus 3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDA----DKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHH
Confidence 5899999999999 99999999999999999999975 237899999999999999999885
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.48 E-value=5.3e-14 Score=143.62 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+...+||+||||+++| |..+||+|||+||++||||+++++ .|..+|+.|++||+||+||.+|.
T Consensus 569 ~~~d~dYYdILGVs~dA----S~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNA----DMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred cCCCCChHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHH
Confidence 44557999999999999 999999999999999999999875 37889999999999999999985
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.6e-14 Score=133.45 Aligned_cols=63 Identities=35% Similarity=0.585 Sum_probs=58.3
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~--~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..++|.+|+|+++| |.+||++|||++++.|||||..+ .++.|+++|+.|..||+||+||.+|.
T Consensus 8 e~e~Ya~LNlpkdA----t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 8 EIELYALLNLPKDA----TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred hhhHHHHhCCCccc----CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 35999999999999 99999999999999999999863 46679999999999999999999986
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.4e-14 Score=121.46 Aligned_cols=62 Identities=32% Similarity=0.572 Sum_probs=56.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
-|+|+||||++++ |..|||+|||+|++++||||++.. +..++.|..|.+||+.|+|+..|.+
T Consensus 99 fDPyEILGl~pga----s~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN 160 (230)
T KOG0721|consen 99 FDPYEILGLDPGA----SEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSREN 160 (230)
T ss_pred CCcHHhhCCCCCC----CHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHH
Confidence 5899999999999 999999999999999999998764 3368899999999999999988753
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-13 Score=122.36 Aligned_cols=62 Identities=34% Similarity=0.596 Sum_probs=56.8
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~-~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.++|+||||..++ |..+|++||++|++.+|||+++. +...|+++|+.|+.||.||+|+++|.
T Consensus 14 ~d~YevLGVer~a----~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 14 KDLYEVLGVERDA----TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred cCHHHHhhhcccC----CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4999999999999 99999999999999999999852 34459999999999999999999985
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=4.7e-13 Score=113.81 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=54.6
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~----~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
+||+||||++.+ .++..+|+++|++|++++|||+..+.. ..+.+.|..||+||++|+||.+|.
T Consensus 2 ~yf~llgl~~~~--~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 2 DYFTLFGLPARY--DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 799999999964 448999999999999999999976432 236789999999999999999885
No 47
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=7.1e-13 Score=112.31 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=54.5
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+||+||||++.. .++..+|+++|++|++++|||++.+.. ..+...+..||+||++|+||.+|+
T Consensus 2 ~~yf~llgl~~~f--~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 2 QNYFQLLGLPQEY--NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5899999999964 458999999999999999999986532 224567889999999999999885
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.37 E-value=7.3e-13 Score=110.96 Aligned_cols=60 Identities=28% Similarity=0.432 Sum_probs=53.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
+.+|+||||++++- .|.++||+|||++++++|||++++ .++|++|++||++|+|+.+|..
T Consensus 5 ~~l~~vLGl~~~A~--~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 5 KELMDLLGLPRSAW--GNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHcCCCCCCC--CCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhcc
Confidence 67999999988762 289999999999999999999764 5799999999999999998753
No 49
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=1.8e-12 Score=110.64 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=56.7
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~----~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..+||++|||++.. .++..+|+++||+|++++|||++.+.. ..+.+.|..||+||++|+||.+|+
T Consensus 3 ~~~~F~l~~l~~~f--~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 3 TPCHFALFDLQPSF--RLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCChhhhcCcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 46899999999865 668999999999999999999986532 236788999999999999999886
No 50
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.34 E-value=1.9e-12 Score=103.81 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=48.0
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK 233 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~ 233 (241)
+..++|+||||++++ |.++|+++||+|++++|||++++ .+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~A----s~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTA----SKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence 447999999999999 99999999999999999999643 578999999999995
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=2.9e-12 Score=109.53 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=54.6
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~----~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+||+||||++.. .++..+|+++|++|++++|||++....+ .+.+.+..||+||++|+||.+|+
T Consensus 6 ~dyf~llglp~~f--~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARF--ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 6999999999964 4589999999999999999999865322 24566799999999999999886
No 52
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.32 E-value=1.9e-12 Score=117.03 Aligned_cols=61 Identities=36% Similarity=0.547 Sum_probs=53.6
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C---hHHHHHHHHHHHHHHHHhcCh
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQE 235 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~---~---~~~a~ekF~~I~~AYevL~dp 235 (241)
.+..++|+||||++++ |.++||++||+|+++||||++.+ + .+.++++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~a----s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESD----DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCC----CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999 99999999999999999999642 1 245899999999999999864
No 53
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.31 E-value=2.3e-12 Score=129.34 Aligned_cols=60 Identities=38% Similarity=0.619 Sum_probs=55.9
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ +..+||++||+|+++||||++++ ..+..+|++|++||++|+||.+|.
T Consensus 2 ~DYYeVLGVs~dA----S~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDA----DEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHH
Confidence 5899999999999 99999999999999999999876 347889999999999999999886
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=2.4e-11 Score=113.46 Aligned_cols=64 Identities=31% Similarity=0.524 Sum_probs=58.6
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~--~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
.+|||+||||.+++ ++.||.+|||++|.+||||-..+. +..|+.+|.-|-.|-+||+||++|.+
T Consensus 393 kRDYYKILGVkRnA----sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq 458 (504)
T KOG0624|consen 393 KRDYYKILGVKRNA----SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ 458 (504)
T ss_pred cchHHHHhhhcccc----cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence 36999999999999 999999999999999999998765 44599999999999999999999864
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.2e-11 Score=115.08 Aligned_cols=62 Identities=35% Similarity=0.519 Sum_probs=57.5
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
+..|+|.+|||++++ +.++||+.||++|+..|||||.. +.|++.|+.|..||++|+|+.+|.
T Consensus 233 ~~~daYsvlGl~~d~----sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 233 NILDAYSALGLPSDC----SDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred cCCCchhhcCCCCCC----CHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence 357999999999998 99999999999999999999985 448999999999999999999885
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.1e-11 Score=109.29 Aligned_cols=62 Identities=29% Similarity=0.555 Sum_probs=56.6
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..+|+|+||||.+++ ++.+|.+|||+||++||||++++.. +.+.|+.|-.||++|+|...|.
T Consensus 31 G~enCYdVLgV~Rea----~KseIakAYRqLARrhHPDr~r~~e--~k~~F~~iAtayeilkd~e~rt 92 (329)
T KOG0722|consen 31 GAENCYDVLGVAREA----NKSEIAKAYRQLARRHHPDRNRDPE--SKKLFVKIATAYEILKDNETRT 92 (329)
T ss_pred cchhHHHHhhhhhhc----cHHHHHHHHHHHHHHhCCcccCCch--hhhhhhhhhcccccccchhhHH
Confidence 347999999999999 9999999999999999999998754 4689999999999999998775
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.3e-11 Score=105.61 Aligned_cols=63 Identities=41% Similarity=0.682 Sum_probs=56.4
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
.|+|+||+|.+.+ +..+|++||+++++++|||+++.....+..+|++|.+||++|+|+.+|..
T Consensus 3 ~d~~~~l~i~~~a----s~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~ 65 (306)
T KOG0714|consen 3 KDYYKILGIARSA----SEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKI 65 (306)
T ss_pred ccHHHHhCccccc----cHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhh
Confidence 6899999999988 88899999999999999999887644466689999999999999998863
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.2e-11 Score=114.25 Aligned_cols=65 Identities=38% Similarity=0.593 Sum_probs=60.0
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
....|+|.||||...+ +..+|+++||++++.+|||++......++.+|++|-+||.+|+||.+|.
T Consensus 370 SkRkd~ykilGi~~~a----s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~ 434 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNA----SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRV 434 (486)
T ss_pred hhhhhHHHHhhhhhhc----ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 3457999999999999 9999999999999999999998886669999999999999999999875
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.07 E-value=3.3e-10 Score=96.74 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=56.1
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~----~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
+.|||++|||++.. .++...|++.|+.|.+++|||+.... ...+.+....||+||.+|+||.+|+
T Consensus 1 ~~nyF~lf~lp~~F--~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 1 MNNPFALFDLPVDF--QLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred CCChHHhcCCCCCC--CCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 36899999999964 67999999999999999999997543 2346777899999999999999986
No 60
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.5e-10 Score=98.36 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=58.3
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhh
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 238 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR 238 (241)
..++|+||.|.|.. +.++||+.||+|++..|||||+++.+.|...|--|.+||..|-|+..|
T Consensus 52 nLNpfeVLqIdpev----~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~r 113 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEV----TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR 113 (250)
T ss_pred ccChHHHHhcCCCC----CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 36899999999998 999999999999999999999999888999999999999999998744
No 61
>PHA02624 large T antigen; Provisional
Probab=98.99 E-value=5.6e-10 Score=110.74 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=52.5
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..++|+||||++++ -.+..+||+|||+++++||||++++ +++|++|+.||++|+|+.++.
T Consensus 10 ~~elyelLGL~~~A--~gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~ 69 (647)
T PHA02624 10 SKELMDLLGLPMAA--WGNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSA 69 (647)
T ss_pred HHHHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhh
Confidence 36899999999865 1388999999999999999999753 689999999999999988764
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.92 E-value=7.9e-10 Score=105.68 Aligned_cols=63 Identities=27% Similarity=0.539 Sum_probs=56.7
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG----NKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~----~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
-|+|+||||+.++ +..+||++||+|++++||||.+. .+...+++++.|++||..|+|...|.+
T Consensus 98 fDPyEILGI~~~t----s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 98 FDPYEILGIDQDT----SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred CChHHhhcccCCC----cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4899999999999 99999999999999999999754 355689999999999999999988753
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.86 E-value=5e-09 Score=88.01 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 189 PYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 189 ~~t~~eIKkAYRklakk~HPDk~~~~----~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.++..+|+++|++|++++|||+.... ...+...|..||+||++|+||.+|+
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 45889999999999999999996432 2347789999999999999999886
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.2e-08 Score=101.36 Aligned_cols=63 Identities=24% Similarity=0.416 Sum_probs=52.8
Q ss_pred CCCCCccccchhcccCCCCCCCCCH-HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCh
Q 026279 168 SESYSLSHHYSVLGLDRLRKAPYTE-AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235 (241)
Q Consensus 168 ~~~~~~~d~Y~ILGl~~~a~~~~t~-~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp 235 (241)
+.+++..++|+||.|+-+. .+.++ +.||++|++||.+||||||+. ..++|..||+||+.|...
T Consensus 1275 P~~mS~d~A~eiL~i~l~n-~~hD~~~KirrqY~kLA~kYHPDKNPE----GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTN-EEHDKPAKIRRQYYKLAAKYHPDKNPE----GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred CCccchHHHHHHhccccCC-CCcccHHHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHHHHHH
Confidence 4456677999999998763 33344 899999999999999999997 589999999999999844
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7e-07 Score=81.21 Aligned_cols=68 Identities=25% Similarity=0.479 Sum_probs=55.2
Q ss_pred CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--GNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~--~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+...|+|.+|||+.-. ...+..+|.+++++.+.+||||+.. ++. ...+.|+.|+.||+||+|+..|.
T Consensus 39 ~Wk~~DlYa~lgLskyR-~ka~~~qi~kah~kkv~kyHPDk~aa~g~~-~~d~fFk~iqkA~evL~D~~~R~ 108 (379)
T COG5269 39 NWKKVDLYALLGLSKYR-TKAIPPQILKAHKKKVYKYHPDKTAAGGNK-GCDEFFKLIQKAREVLGDRKLRL 108 (379)
T ss_pred hhhhhhHHHHhchHhhh-cCCCcHHHHHHHHHHHHHhCccchhccCCC-CcHHHHHHHHHHHHHhccHHHHh
Confidence 45557999999999653 2337788999999999999999962 222 26889999999999999999885
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.5e-06 Score=77.59 Aligned_cols=56 Identities=21% Similarity=0.501 Sum_probs=49.6
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH-HhcC
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE-AIKQ 234 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYe-vL~d 234 (241)
...+|.||||..++ +.++++.+|.+|++++|||...... ..+.|..|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~----~adevr~af~~lakq~hpdsgs~~a--daa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGA----DADEVREAFHDLAKQVHPDSGSEEA--DAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccC----chhHHHHHHHHHHHHcCCCCCCccc--cHHHHHHHHHHHHHHHHH
Confidence 46899999999999 9999999999999999999987643 5789999999998 6653
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2e-05 Score=62.41 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCh
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp 235 (241)
++..++--||||.++. +.+.||.++|++....|||+.++.- .-.+||+|+++|...
T Consensus 53 Msr~EA~lIL~v~~s~----~k~KikeaHrriM~~NHPD~GGSPY-----lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSL----DKDKIKEAHRRIMLANHPDRGGSPY-----LASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccc----cHHHHHHHHHHHHHcCCCcCCCCHH-----HHHHHHHHHHHHhcc
Confidence 4456788999999988 9999999999999999999998742 223599999999753
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00014 Score=61.36 Aligned_cols=66 Identities=20% Similarity=0.401 Sum_probs=54.1
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ----GNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~----~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+||.+||..... .+++.-+.-.|....+++|||+.. ++..-|.+...+||+||.+|+||-.|+
T Consensus 6 ~~~~ff~~Fg~e~~~--~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA 75 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSF--KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA 75 (168)
T ss_pred hHHHHHHHhccccCC--CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 346899999988754 557777887999999999999942 233457888999999999999999886
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00067 Score=57.68 Aligned_cols=55 Identities=33% Similarity=0.500 Sum_probs=47.7
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CC----hHHHHHHHHHHHHHHHHh
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--GN----KEAAEAKFKEVMVSYEAI 232 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~--~~----~~~a~ekF~~I~~AYevL 232 (241)
.+.|.+||+.... +..+|+++|+.+..++|||+-. +. -+.+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~----~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKA----DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhh----hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999 9999999999999999999842 21 345889999999999865
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.95 E-value=0.011 Score=57.68 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHHhc
Q 026279 190 YTEAEIKTAFRAKAKEFHPDQNQGN------KEAAEAKFKEVMVSYEAIK 233 (241)
Q Consensus 190 ~t~~eIKkAYRklakk~HPDk~~~~------~~~a~ekF~~I~~AYevL~ 233 (241)
+|.+.||++||+.++..||||.+.. +-.|++.|-.+.+|+....
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 4899999999999999999997543 1235666666777766543
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.0052 Score=52.24 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=47.7
Q ss_pred cchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcChhhhc
Q 026279 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 176 ~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~----~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
++.++|+++.+ .+..+.++..|+.+.+.+|||+...... .+.+.+..++.||.+|++|-.|+
T Consensus 3 ~~~~~~~~~~f--~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra 68 (174)
T COG1076 3 GFVLFGLPRAF--QIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA 68 (174)
T ss_pred cccccccHHHH--HHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44566666644 3466778999999999999999754322 25678999999999999998875
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.42 E-value=0.028 Score=45.95 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCh
Q 026279 170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235 (241)
Q Consensus 170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp 235 (241)
.+++.+++.||+|++.. +.++|.+.|..|-...+|+++++. -.=.+|..|.+.|..+
T Consensus 54 ~Mtl~EA~~ILnv~~~~----~~eeI~k~y~~Lf~~Nd~~kGGSf-----YLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 54 GMTLDEARQILNVKEEL----SREEIQKRYKHLFKANDPSKGGSF-----YLQSKVFRAKERLEQE 110 (127)
T ss_dssp ---HHHHHHHHT--G------SHHHHHHHHHHHHHHT-CCCTS-H-----HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCcc----CHHHHHHHHHHHHhccCCCcCCCH-----HHHHHHHHHHHHHHHH
Confidence 57778999999999977 999999999999999999988752 2233466676666543
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.73 E-value=0.26 Score=34.72 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.8
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAK 204 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklak 204 (241)
++..++|++|||+++. +.+.|-.+|.....
T Consensus 2 ~~~~~Ay~~Lgi~~~~----~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDT----DDDFIISAFQSKVN 31 (62)
T ss_pred CCHHHHHHHhCcCCCC----CHHHHHHHHHHHHH
Confidence 3557899999999988 99999999999888
No 74
>PF09333 ATG_C: ATG C terminal domain; InterPro: IPR015412 Eukaryotes have developed an evolutionarily conserved process, termed autophagy, to survive starvation conditions. The vacuole or lysosome mediates the turnover and recycling of non-essential intracellular material for re-use in critical biosynthetic reactions. ATG2 (also known as Apg2) is required for the formation and/or completion of cytosolic sequestering vesicles that are needed for vacuolar import through both the Cvt pathway and autophagy, as well as for the specific degradation of peroxisomes. Apg2 is a peripheral membrane protein that localises to the previously identified perivacuolar compartment that contains Apg9 []. This entry represents the C-terminal domain of Apg2 and related proteins.
Probab=80.38 E-value=2.1 Score=33.14 Aligned_cols=36 Identities=14% Similarity=-0.067 Sum_probs=31.4
Q ss_pred cchhHHHHHHHHHHHHHhhhHhhhh--HHHHHHHHHHh
Q 026279 24 KADVKLWGVFLFGLIGATATTFAVG--QLRKTVDWVYS 59 (241)
Q Consensus 24 ~g~~k~~g~~~~~~i~~~~~~~~v~--q~~r~~~~~~~ 59 (241)
.|+++|++-+|+++|.-|++++.=+ ++..||.|.+.
T Consensus 49 ~g~~~gv~kgvp~~vvkP~iG~~ea~s~~l~Gi~N~l~ 86 (98)
T PF09333_consen 49 KGFVKGVGKGVPGAVVKPMIGATEAVSKTLQGIRNQLD 86 (98)
T ss_pred HHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999998766 99999998544
No 75
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=78.07 E-value=2.2 Score=27.55 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhHhhhh---HHHHH
Q 026279 33 FLFGLIGATATTFAVG---QLRKT 53 (241)
Q Consensus 33 ~~~~~i~~~~~~~~v~---q~~r~ 53 (241)
.|+|+|-.|++|+.|. |.+||
T Consensus 9 iVLGlipvTl~GlfvaAylQYrRg 32 (37)
T CHL00008 9 IVLGLIPITLAGLFVTAYLQYRRG 32 (37)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhc
Confidence 4678999999999987 77765
No 76
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=77.88 E-value=2.2 Score=27.58 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHHHHHHhhhHhhhh---HHHHH
Q 026279 33 FLFGLIGATATTFAVG---QLRKT 53 (241)
Q Consensus 33 ~~~~~i~~~~~~~~v~---q~~r~ 53 (241)
.|+|+|-.|++|+.|. |.+||
T Consensus 9 iVLGlipiTl~GlfvaAylQYrRg 32 (37)
T PRK00665 9 IVLGLIPVTLAGLFVAAWNQYKRG 32 (37)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcc
Confidence 4679999999999987 77765
No 77
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=77.32 E-value=4.6 Score=32.22 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHHhcChh
Q 026279 190 YTEAEIKTAFRAKAKEFHPDQNQGNK---EAAEAKFKEVMVSYEAIKQER 236 (241)
Q Consensus 190 ~t~~eIKkAYRklakk~HPDk~~~~~---~~a~ekF~~I~~AYevL~dp~ 236 (241)
++..+++.+.|.+-++.|||.....+ ..-++-++.|+.-.+.|..+.
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 37789999999999999999865443 334667888888888887654
No 78
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=72.49 E-value=3.2 Score=26.96 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhHhhhh---HHHHH
Q 026279 33 FLFGLIGATATTFAVG---QLRKT 53 (241)
Q Consensus 33 ~~~~~i~~~~~~~~v~---q~~r~ 53 (241)
.|+|+|-.|++|+.|. |..||
T Consensus 9 iVlGli~vtl~Glfv~Ay~QY~Rg 32 (37)
T PF02529_consen 9 IVLGLIPVTLAGLFVAAYLQYRRG 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcc
Confidence 3678888888888886 65554
No 79
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=65.75 E-value=7.3 Score=27.40 Aligned_cols=24 Identities=17% Similarity=-0.118 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHHhhhHhhh
Q 026279 24 KADVKLWGVFLFGLIGATATTFAV 47 (241)
Q Consensus 24 ~g~~k~~g~~~~~~i~~~~~~~~v 47 (241)
+.|.+|+-+|+++-|++.++++.+
T Consensus 2 kkF~~G~l~G~~~t~aa~a~av~~ 25 (54)
T PF11240_consen 2 KKFGKGFLTGVAATLAAIAGAVFT 25 (54)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHH
Confidence 458899999999999998888877
No 80
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=52.83 E-value=13 Score=26.70 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhHhhhhHHHHHHH
Q 026279 29 LWGVFLFGLIGATATTFAVGQLRKTVD 55 (241)
Q Consensus 29 ~~g~~~~~~i~~~~~~~~v~q~~r~~~ 55 (241)
++|-.|+++|++.+.++++.|+.+++.
T Consensus 44 p~G~~ll~~vg~gli~~gi~~~~~a~~ 70 (73)
T PF06724_consen 44 PFGRWLLGAVGLGLIGYGIWQFVKAVY 70 (73)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999988764
No 81
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=52.50 E-value=16 Score=29.27 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHhhhHhhhh
Q 026279 26 DVKLWGVFLFGLIGATATTFAVG 48 (241)
Q Consensus 26 ~~k~~g~~~~~~i~~~~~~~~v~ 48 (241)
--|.+|+|.+|+||+..+.++|.
T Consensus 75 rwklmG~GaLgvigig~aalgvt 97 (112)
T PF07439_consen 75 RWKLMGMGALGVIGIGGAALGVT 97 (112)
T ss_pred HHHHhccchhhhhhHhHHHHHhh
Confidence 34788999999999988888875
No 82
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=44.58 E-value=1.7e+02 Score=25.85 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 026279 114 NRERNKY 120 (241)
Q Consensus 114 ~~er~k~ 120 (241)
.++|++-
T Consensus 159 ~~~~~~~ 165 (197)
T PRK12585 159 EQERERE 165 (197)
T ss_pred HHHHHHH
Confidence 3444443
No 83
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=41.53 E-value=21 Score=27.85 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHhhhHhhh
Q 026279 25 ADVKLWGVFLFGLIGATATTFAV 47 (241)
Q Consensus 25 g~~k~~g~~~~~~i~~~~~~~~v 47 (241)
=+++||++|+++.+++...-.+.
T Consensus 64 ~~f~G~k~Gfaaf~a~v~vEyal 86 (100)
T KOG4631|consen 64 VFFKGFKWGFAAFVAAVGVEYAL 86 (100)
T ss_pred hhcccchHHHHHHHHHHHHHHHH
Confidence 46789999998887766554444
No 84
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=40.99 E-value=1.2e+02 Score=21.12 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhHhhh
Q 026279 32 VFLFGLIGATATTFAV 47 (241)
Q Consensus 32 ~~~~~~i~~~~~~~~v 47 (241)
..++++||+|+.+.++
T Consensus 16 ~tV~~Lig~T~~~g~~ 31 (59)
T PF14880_consen 16 TTVLGLIGFTVYGGGL 31 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777777766555
No 85
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=40.13 E-value=23 Score=25.64 Aligned_cols=22 Identities=27% Similarity=-0.070 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHHHHhhhHh
Q 026279 24 KADVKLWGVFLFGLIGATATTF 45 (241)
Q Consensus 24 ~g~~k~~g~~~~~~i~~~~~~~ 45 (241)
-.|.||+|++.+++.++++++.
T Consensus 12 R~Flk~lg~~aaa~~aa~~~~~ 33 (66)
T TIGR02811 12 RDLLKGLGVGAAAGAVAAATGR 33 (66)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3688988876654444444443
No 86
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=37.63 E-value=19 Score=25.29 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=13.4
Q ss_pred ccchhHHHHHHHHHHHHHhh
Q 026279 23 EKADVKLWGVFLFGLIGATA 42 (241)
Q Consensus 23 ~~g~~k~~g~~~~~~i~~~~ 42 (241)
-+..+.|+|+|++++++..+
T Consensus 24 ~~~~fpG~~~G~aaf~~~v~ 43 (57)
T PF08122_consen 24 FKNMFPGFGIGFAAFAVYVA 43 (57)
T ss_pred HHHhcCCcHHHHHHHHHHHH
Confidence 35667888888776665443
No 87
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=36.79 E-value=28 Score=17.61 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhc
Q 026279 221 KFKEVMVSYEAIK 233 (241)
Q Consensus 221 kF~~I~~AYevL~ 233 (241)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4777888888774
No 88
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.80 E-value=56 Score=25.65 Aligned_cols=26 Identities=31% Similarity=0.181 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhHhhhhHHHHHHHH
Q 026279 31 GVFLFGLIGATATTFAVGQLRKTVDW 56 (241)
Q Consensus 31 g~~~~~~i~~~~~~~~v~q~~r~~~~ 56 (241)
++.++++|.+-+.|+++.|+.-+|.-
T Consensus 30 ~ilti~aiVg~i~Gf~~Qqls~tvy~ 55 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQQQLSVTVYI 55 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999987766554
No 89
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=31.85 E-value=41 Score=22.28 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhHhhhhHHHHHHHHHHhhhcccc
Q 026279 30 WGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQ 65 (241)
Q Consensus 30 ~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~~~~~~~ 65 (241)
.|+.+++++++.++.+.+..+..-+.++..++....
T Consensus 4 ~~a~~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em 39 (53)
T PF01484_consen 4 YGAIVVSTVAILSCLITVPSIYNDIQNFQSELDDEM 39 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655554443
No 90
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.81 E-value=52 Score=27.09 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 026279 170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG 213 (241)
Q Consensus 170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~ 213 (241)
.+++.....||+|++.. +.++|.+.|-.|-....+.+.+.
T Consensus 55 ~iTlqEa~qILnV~~~l----n~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 55 KITLQEAQQILNVKEPL----NREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccHHHHhhHhCCCCCC----CHHHHHHHHHHHHhccCcccCcc
Confidence 37788999999998876 99999999999999987777655
No 91
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=30.85 E-value=57 Score=21.96 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHHHHHHh
Q 026279 24 KADVKLWGVFLFGLIGAT 41 (241)
Q Consensus 24 ~g~~k~~g~~~~~~i~~~ 41 (241)
||..|.+|++.+++.++.
T Consensus 9 Kg~~Kpl~~~~~~~~~~~ 26 (44)
T PF09163_consen 9 KGVLKPLGAAGMGATAAA 26 (44)
T ss_dssp HTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 578888877665554443
No 92
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=28.54 E-value=1.4e+02 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.080 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHh
Q 026279 27 VKLWGVFLFGLIGATATTFAVGQLRKTVDWVYS 59 (241)
Q Consensus 27 ~k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~ 59 (241)
.|.+|+++...+++..+++++|.+......++.
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~ava 47 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMA 47 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466677777667777788888877777666554
No 93
>PRK01844 hypothetical protein; Provisional
Probab=28.38 E-value=70 Score=23.81 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhHhhhh
Q 026279 30 WGVFLFGLIGATATTFAVG 48 (241)
Q Consensus 30 ~g~~~~~~i~~~~~~~~v~ 48 (241)
++++++++|+..+.||.++
T Consensus 7 I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777773
No 94
>COG2879 Uncharacterized small protein [Function unknown]
Probab=27.68 E-value=1e+02 Score=22.46 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 026279 198 AFRAKAKEFHPDQNQGNKEAAEAKFKEVMVS 228 (241)
Q Consensus 198 AYRklakk~HPDk~~~~~~~a~ekF~~I~~A 228 (241)
.|-.-.++.|||+.+-. -.+.|++-.+|
T Consensus 27 nYVehmr~~hPd~p~mT---~~EFfrec~da 54 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT---YEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHhCcCCCccc---HHHHHHHHHHh
Confidence 57788899999998753 35677766654
No 95
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=25.74 E-value=76 Score=19.33 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHhC
Q 026279 191 TEAEIKTAFRAKAKEFH 207 (241)
Q Consensus 191 t~~eIKkAYRklakk~H 207 (241)
..++.+.+.|+.|+.||
T Consensus 9 ~~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYH 25 (28)
T ss_pred chHHHHHHHHHHHHHhc
Confidence 34778899999999999
No 96
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=25.10 E-value=1.1e+02 Score=20.17 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhHhhh
Q 026279 28 KLWGVFLFGLIGATATTFAV 47 (241)
Q Consensus 28 k~~g~~~~~~i~~~~~~~~v 47 (241)
..+...++|+|++++.+..+
T Consensus 10 ~lmN~ll~Gava~~a~~~ly 29 (39)
T PF08802_consen 10 QLMNLLLGGAVAVPAGGMLY 29 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhh
Confidence 45678888988888887765
No 97
>PRK00523 hypothetical protein; Provisional
Probab=24.52 E-value=84 Score=23.38 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhHhhhh
Q 026279 31 GVFLFGLIGATATTFAVG 48 (241)
Q Consensus 31 g~~~~~~i~~~~~~~~v~ 48 (241)
+++++++|+..+.|+.++
T Consensus 9 ~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777777777777773
No 98
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=24.36 E-value=1.6e+02 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHh
Q 026279 27 VKLWGVFLFGLIGATATTFAVGQLRKTVDWVYS 59 (241)
Q Consensus 27 ~k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~ 59 (241)
++.+|+|+.. +++..+++++|.+......++.
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiA 62 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIA 62 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 4566777776 7777788888777666655444
No 99
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=24.09 E-value=1.3e+02 Score=23.80 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=18.7
Q ss_pred CCcccccchhHHHHHHHHHHHHHhhh
Q 026279 18 NGPQQEKADVKLWGVFLFGLIGATAT 43 (241)
Q Consensus 18 ~~~~~~~g~~k~~g~~~~~~i~~~~~ 43 (241)
..+..-.|..|+|-|+|..|+++.|+
T Consensus 6 vs~~KPsGsL~PWeIfLItLasVvva 31 (106)
T PF14654_consen 6 VSEVKPSGSLKPWEIFLITLASVVVA 31 (106)
T ss_pred ccccccCCCccchHHHHHHHHHHHHH
Confidence 33445569999999999887765543
No 100
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=24.02 E-value=2e+02 Score=21.97 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHh
Q 026279 28 KLWGVFLFGLIGATATTFAVGQLRKTVDWVYS 59 (241)
Q Consensus 28 k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~ 59 (241)
+.+|+++...+++..+++++|++......++.
T Consensus 10 ~~igagl~~gla~igagiG~G~~~~~a~e~ia 41 (86)
T TIGR03322 10 SIVTAGLTIAIGSIGPALGEGRAVAQALTALA 41 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677776667777788888887777766554
No 101
>PHA01757 hypothetical protein
Probab=23.19 E-value=1.1e+02 Score=23.46 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhHhhhhHH
Q 026279 30 WGVFLFGLIGATATTFAVGQL 50 (241)
Q Consensus 30 ~g~~~~~~i~~~~~~~~v~q~ 50 (241)
.=-|.|+++|+.+.+|.||-+
T Consensus 9 al~gf~a~~g~l~~~fii~e~ 29 (98)
T PHA01757 9 ALYGFFAVTGALSASFIIGEI 29 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334677788888888888743
No 102
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=23.15 E-value=1.9e+02 Score=21.53 Aligned_cols=32 Identities=6% Similarity=0.040 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHh
Q 026279 27 VKLWGVFLFGLIGATATTFAVGQLRKTVDWVYS 59 (241)
Q Consensus 27 ~k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~ 59 (241)
.+.+|+|+.. +++..+++++|.+......++.
T Consensus 10 ~~~igagla~-laalGagig~G~~~~~a~~a~a 41 (79)
T PRK13469 10 MSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVG 41 (79)
T ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 4566778777 7778888888877766666554
No 103
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.75 E-value=2.8e+02 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 026279 218 AEAKFKEVMVSYE 230 (241)
Q Consensus 218 a~ekF~~I~~AYe 230 (241)
..+.|..+|.+|+
T Consensus 92 ~~~~L~~lN~~Y~ 104 (158)
T TIGR03180 92 TRAALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 5678899999997
No 104
>PRK11677 hypothetical protein; Provisional
Probab=22.75 E-value=84 Score=25.93 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhHhhhh
Q 026279 30 WGVFLFGLIGATATTFAVG 48 (241)
Q Consensus 30 ~g~~~~~~i~~~~~~~~v~ 48 (241)
|-++|+|+|...+.|+.++
T Consensus 3 W~~a~i~livG~iiG~~~~ 21 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888883
No 105
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=22.44 E-value=75 Score=22.87 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=20.1
Q ss_pred ccccchhHHHHHHHHHHHHHhhhHhhhhHHHHHH
Q 026279 21 QQEKADVKLWGVFLFGLIGATATTFAVGQLRKTV 54 (241)
Q Consensus 21 ~~~~g~~k~~g~~~~~~i~~~~~~~~v~q~~r~~ 54 (241)
+.++-++-+| |+|+....|+|-++-||.|.+
T Consensus 31 ~e~kypvgPw---LlglFvFVVcGSa~FqIIr~~ 61 (65)
T KOG3491|consen 31 KEKKYPVGPW---LLGLFVFVVCGSALFQIIRTA 61 (65)
T ss_pred ccccCCcchH---HHHHHHHHhhcHHHHHHHHHH
Confidence 4444444444 555556667888888998876
No 106
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=22.41 E-value=1e+02 Score=22.65 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=5.5
Q ss_pred HHHHHHhhhHhhhh
Q 026279 35 FGLIGATATTFAVG 48 (241)
Q Consensus 35 ~~~i~~~~~~~~v~ 48 (241)
|+++.+.+...++|
T Consensus 36 ~~~~~~l~~~~~iG 49 (67)
T PF11511_consen 36 LGLWFLLVALYFIG 49 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444443
No 107
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=22.35 E-value=2.8e+02 Score=23.41 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHHHhCCCCCCCC---------------hHHHHHHHHHHHHHHH
Q 026279 201 AKAKEFHPDQNQGN---------------KEAAEAKFKEVMVSYE 230 (241)
Q Consensus 201 klakk~HPDk~~~~---------------~~~a~ekF~~I~~AYe 230 (241)
..++..|||..... .+...+.|..+|.+|+
T Consensus 65 ~~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 65 DEALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred HHHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 34677899986411 1235778999999997
No 108
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.25 E-value=55 Score=26.03 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhh
Q 026279 31 GVFLFGLIGATAT 43 (241)
Q Consensus 31 g~~~~~~i~~~~~ 43 (241)
+|||.|+||+.+.
T Consensus 86 ~VGvaAaVGlllG 98 (104)
T COG4575 86 GVGVAAAVGLLLG 98 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777776543
No 109
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=22.23 E-value=1.1e+02 Score=29.69 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=23.9
Q ss_pred ccccchhHHH-HHHHHHHHHHhhhHhhhhHHHHHHHH
Q 026279 21 QQEKADVKLW-GVFLFGLIGATATTFAVGQLRKTVDW 56 (241)
Q Consensus 21 ~~~~g~~k~~-g~~~~~~i~~~~~~~~v~q~~r~~~~ 56 (241)
...+|...+. +++|++++|+.+.+++++|.-....+
T Consensus 26 ~~k~g~g~~l~~~all~aLgLGagg~~f~QqQ~~~~~ 62 (391)
T COG2959 26 VSKNGAGLLLSLAALLLALGLGAGGYYFGQQQNVLQT 62 (391)
T ss_pred cCCCCchhHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 3344443444 77888888888899999865544444
No 110
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=21.99 E-value=99 Score=20.16 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.0
Q ss_pred cccchhHHHHHHHHHHHHHhhh
Q 026279 22 QEKADVKLWGVFLFGLIGATAT 43 (241)
Q Consensus 22 ~~~g~~k~~g~~~~~~i~~~~~ 43 (241)
-..||.|.+|-.++.+||..|.
T Consensus 16 tkrgfykligclvvmfigiivm 37 (41)
T PF13121_consen 16 TKRGFYKLIGCLVVMFIGIIVM 37 (41)
T ss_pred ehhhHHHHHHHHHHHHHHHHhe
Confidence 3459999999999999987764
No 111
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=21.84 E-value=29 Score=24.42 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=19.7
Q ss_pred cccchhcccCCCCCCCCCHHHH-HHHHHHHHHHhCCC
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEI-KTAFRAKAKEFHPD 209 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eI-KkAYRklakk~HPD 209 (241)
..+++|||+++ +++ ......+....|||
T Consensus 6 ~~~~~i~G~~~--------~~~~~~~~~~~~~~ihpd 34 (91)
T PF08447_consen 6 DNFYEIFGYSP--------EEIGKPDFEEWLERIHPD 34 (91)
T ss_dssp THHHHHHTS-H--------HHHTCBEHHHHHHHB-TT
T ss_pred HHHHHHhCCCH--------HHhccCCHHHHHhhcCHH
Confidence 46889999954 456 55667788889998
No 112
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=21.80 E-value=2.3e+02 Score=21.38 Aligned_cols=33 Identities=18% Similarity=-0.047 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHh
Q 026279 27 VKLWGVFLFGLIGATATTFAVGQLRKTVDWVYS 59 (241)
Q Consensus 27 ~k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~ 59 (241)
.+.+|+|+...+++..+++++|-+......++.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaia 40 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVA 40 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777776666666777777655555555443
No 113
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=21.13 E-value=67 Score=22.95 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=18.4
Q ss_pred ccccchhHHHHHHHHHHHHHhhhHh
Q 026279 21 QQEKADVKLWGVFLFGLIGATATTF 45 (241)
Q Consensus 21 ~~~~g~~k~~g~~~~~~i~~~~~~~ 45 (241)
......+-|+|+++.|+||-.+--+
T Consensus 32 f~~ia~~~~iG~~i~G~iGf~Ikli 56 (61)
T PRK09400 32 FLLVAKVTGLGILLIGLIGFIIYLI 56 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788999999998776544
No 114
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=20.68 E-value=2.5e+02 Score=21.49 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHhhhcccccccc
Q 026279 25 ADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWK 69 (241)
Q Consensus 25 g~~k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~~~~~~~~~w~ 69 (241)
+..|+.+--.+.++|+.+++++..=++..+.--+.+...+..-|-
T Consensus 17 ~~i~~y~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~ 61 (87)
T PF11190_consen 17 ETIKGYAKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWG 61 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHH
Confidence 445666444444444444444443334444445555555654443
No 115
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=20.57 E-value=2.6e+02 Score=20.90 Aligned_cols=33 Identities=9% Similarity=-0.059 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHh
Q 026279 27 VKLWGVFLFGLIGATATTFAVGQLRKTVDWVYS 59 (241)
Q Consensus 27 ~k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~~~ 59 (241)
.+.+|+|+...+++..+++++|-+.-....++.
T Consensus 7 ~~~i~agla~glaaiGagiG~G~~~~~a~~~ia 39 (78)
T PRK06876 7 LTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAA 39 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777667777778887766666666554
No 116
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=20.26 E-value=2.2e+02 Score=21.25 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHhhhHhhhhHHHHHHHHH
Q 026279 27 VKLWGVFLFGLIGATATTFAVGQLRKTVDWV 57 (241)
Q Consensus 27 ~k~~g~~~~~~i~~~~~~~~v~q~~r~~~~~ 57 (241)
.+.+|+|+.. +++..+++++|.+......+
T Consensus 8 ~~~igaGla~-iaa~GagiG~G~~~~~~~e~ 37 (77)
T MTH00222 8 AKFVGAGAAT-IGAAGSGAGIGTVFGNLIIG 37 (77)
T ss_pred HHHHHHHHHH-HHhhhhHHHHHHHHHHHHHH
Confidence 4667777765 77777777777655555443
Done!