Query 026279
Match_columns 241
No_of_seqs 250 out of 1721
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ej7_A HCG3 gene; HCG3 protein 99.8 1.3E-18 4.3E-23 128.9 7.5 64 172-239 7-70 (82)
2 2yua_A Williams-beuren syndrom 99.7 3.5E-18 1.2E-22 131.3 8.3 65 170-239 13-77 (99)
3 2dmx_A DNAJ homolog subfamily 99.7 2E-18 6.9E-23 130.6 6.2 64 172-239 7-70 (92)
4 2dn9_A DNAJ homolog subfamily 99.7 3.2E-18 1.1E-22 125.8 6.6 62 173-239 6-67 (79)
5 2ys8_A RAB-related GTP-binding 99.7 3.9E-18 1.3E-22 129.1 6.4 63 173-241 26-88 (90)
6 2lgw_A DNAJ homolog subfamily 99.7 4.7E-18 1.6E-22 131.1 6.8 63 173-239 1-63 (99)
7 1iur_A KIAA0730 protein; DNAJ 99.7 4.7E-18 1.6E-22 128.8 6.4 66 169-238 11-76 (88)
8 2ctp_A DNAJ homolog subfamily 99.7 1E-17 3.5E-22 123.0 6.6 61 173-239 6-66 (78)
9 1wjz_A 1700030A21RIK protein; 99.7 9.9E-18 3.4E-22 126.9 6.6 65 171-239 13-82 (94)
10 2ctr_A DNAJ homolog subfamily 99.7 1.3E-17 4.5E-22 125.4 7.1 61 173-239 6-66 (88)
11 2och_A Hypothetical protein DN 99.7 1E-17 3.4E-22 121.7 6.1 61 171-239 5-65 (73)
12 2ctw_A DNAJ homolog subfamily 99.7 2.5E-17 8.5E-22 128.8 8.6 63 172-239 15-77 (109)
13 1hdj_A Human HSP40, HDJ-1; mol 99.7 1.5E-17 5E-22 121.9 6.8 60 174-239 3-62 (77)
14 2ctq_A DNAJ homolog subfamily 99.7 1.2E-17 4.3E-22 131.0 6.3 63 172-239 18-80 (112)
15 2cug_A Mkiaa0962 protein; DNAJ 99.7 3.3E-17 1.1E-21 123.2 6.8 61 173-239 16-76 (88)
16 2o37_A Protein SIS1; HSP40, J- 99.7 2.8E-17 9.4E-22 124.7 6.1 61 171-239 5-65 (92)
17 1bq0_A DNAJ, HSP40; chaperone, 99.7 1.8E-17 6.1E-22 128.1 2.7 61 174-239 3-63 (103)
18 1faf_A Large T antigen; J doma 99.7 4.5E-17 1.5E-21 120.7 4.6 59 173-240 10-70 (79)
19 2guz_A Mitochondrial import in 99.6 1.4E-16 4.7E-21 115.7 4.9 60 170-238 10-70 (71)
20 2l6l_A DNAJ homolog subfamily 99.6 2.8E-16 9.7E-21 129.3 6.9 64 172-239 8-76 (155)
21 3apq_A DNAJ homolog subfamily 99.6 2.4E-16 8.1E-21 133.1 5.6 61 174-239 2-62 (210)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.6 3.9E-16 1.3E-20 121.5 5.8 65 172-239 13-79 (109)
23 1gh6_A Large T antigen; tumor 99.6 1.1E-16 3.7E-21 126.7 1.2 58 174-240 8-67 (114)
24 2qwo_B Putative tyrosine-prote 99.6 2.1E-16 7E-21 120.9 2.7 57 174-234 33-91 (92)
25 3hho_A CO-chaperone protein HS 99.6 1.4E-15 4.6E-20 128.2 5.9 64 174-239 4-71 (174)
26 1n4c_A Auxilin; four helix bun 99.6 1.1E-15 3.6E-20 130.1 4.3 63 174-240 117-181 (182)
27 1fpo_A HSC20, chaperone protei 99.6 2.3E-15 7.8E-20 126.5 5.6 63 175-239 2-68 (171)
28 3ag7_A Putative uncharacterize 99.6 7.2E-16 2.5E-20 120.5 2.1 58 174-236 41-104 (106)
29 3lz8_A Putative chaperone DNAJ 99.5 6.8E-16 2.3E-20 141.8 0.0 65 170-240 24-88 (329)
30 3bvo_A CO-chaperone protein HS 99.5 5.9E-15 2E-19 127.6 5.9 65 173-239 42-110 (207)
31 2pf4_E Small T antigen; PP2A, 99.5 3.3E-15 1.1E-19 126.2 0.8 58 174-240 11-70 (174)
32 3uo3_A J-type CO-chaperone JAC 99.5 1.7E-14 5.6E-19 122.5 2.9 60 172-239 9-75 (181)
33 3apo_A DNAJ homolog subfamily 99.4 7.5E-14 2.6E-18 138.4 0.6 64 171-239 18-81 (780)
34 2guz_B Mitochondrial import in 99.0 4.6E-10 1.6E-14 80.4 5.0 56 172-236 2-60 (65)
35 2y4t_A DNAJ homolog subfamily 98.8 3.1E-09 1.1E-13 94.6 5.4 62 174-239 382-445 (450)
36 2pzi_A Probable serine/threoni 78.5 1.1 3.8E-05 43.3 3.0 44 175-231 630-675 (681)
37 1q90_G Cytochrome B6F complex 73.4 2.2 7.4E-05 26.8 2.3 21 33-53 9-32 (37)
38 1vf5_G Protein PET G; photosyn 68.7 1.9 6.7E-05 27.0 1.3 20 34-53 10-32 (37)
39 3heq_A Major prion protein; ce 33.1 14 0.00047 29.4 1.0 34 12-48 8-42 (142)
40 2dw3_A Intrinsic membrane prot 26.0 50 0.0017 23.8 2.9 14 35-48 38-51 (77)
41 3bo0_B Preprotein translocase 25.0 57 0.002 21.9 3.0 32 14-45 22-56 (65)
42 1ckt_A High mobility group 1 p 24.3 1.3E+02 0.0043 19.9 4.7 37 197-237 14-50 (71)
43 3mp7_B Preprotein translocase 24.3 55 0.0019 22.4 2.8 26 21-46 30-55 (61)
44 1qqr_A Streptokinase domain B; 21.4 44 0.0015 26.6 2.0 32 175-210 33-64 (138)
No 1
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=128.88 Aligned_cols=64 Identities=38% Similarity=0.606 Sum_probs=59.6
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+||+||||++++ |.++||++|++|++++|||+++...+.+.++|++|++||++|+||.+|.
T Consensus 7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQA----SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp SSCCHHHHTTCCTTC----CHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 347999999999999 9999999999999999999998876678999999999999999999885
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=131.29 Aligned_cols=65 Identities=31% Similarity=0.527 Sum_probs=59.1
Q ss_pred CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+...+||+||||++++ +.++||++||+|+++||||+++++.. +.++|++|++||++|+||.+|.
T Consensus 13 ~~~~~~~Y~vLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTA----TQAQIKAAYYRQCFLYHPDRNSGSAE-AAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp SSCSSHHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCSSCSH-HHHHHHHHHHHHHHTTSHHHHH
T ss_pred CCCccCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence 44557999999999999 99999999999999999999986544 7899999999999999999885
No 3
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=130.64 Aligned_cols=64 Identities=39% Similarity=0.630 Sum_probs=59.4
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+.+||+||||++++ +.++||++|++|+++||||+++...+.++++|++|++||++|+||.+|.
T Consensus 7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (92)
T 2dmx_A 7 GMANYYEVLGVQASA----SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70 (92)
T ss_dssp CCCCHHHHHTCCTTC----CTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 457999999999999 9999999999999999999998776678999999999999999999885
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=125.85 Aligned_cols=62 Identities=34% Similarity=0.593 Sum_probs=57.1
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..+||+||||++++ |.++||++|++|++++|||++++.+. +.++|++|++||++|+||.+|.
T Consensus 6 ~~~~y~iLgv~~~a----~~~~Ik~ayr~l~~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 6 SGDYYQILGVPRNA----SQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp CSCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCSSCTT-HHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence 36899999999999 99999999999999999999986543 7899999999999999999885
No 5
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=129.11 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=57.3
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcCC
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS 241 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~~ 241 (241)
..+||+||||++++ |.++||++||+|+++||||++++. .+.++|++|++||++|+||.+|..+
T Consensus 26 ~~~~y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~~~ 88 (90)
T 2ys8_A 26 SKDSWDMLGVKPGA----SRDEVNKAYRKLAVLLHPDKCVAP--GSEDAFKAVVNARTALLKNIKSGPS 88 (90)
T ss_dssp CSSHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTTCCCT--THHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCcccccCC
Confidence 36999999999999 999999999999999999999763 2788999999999999999998753
No 6
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-18 Score=131.08 Aligned_cols=63 Identities=41% Similarity=0.665 Sum_probs=58.8
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
+.+||+||||++++ |.++||++|++|++++|||+++...+.+.+.|++|++||++|+||.+|.
T Consensus 1 M~d~Y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~ 63 (99)
T 2lgw_A 1 MASYYEILDVPRSA----SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63 (99)
T ss_dssp CCCHHHHSSSCTTS----CHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 36899999999999 9999999999999999999998876678999999999999999999884
No 7
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.72 E-value=4.7e-18 Score=128.79 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=59.6
Q ss_pred CCCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhh
Q 026279 169 ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 238 (241)
Q Consensus 169 ~~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR 238 (241)
......++|+||||++++ |.++||+|||+|+++||||+++++.+.++++|++|++||++|+|...|
T Consensus 11 ~~~~~~~~y~vLgv~~~a----s~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 11 RGSILKEVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SSSCHHHHHHHHHHTTSS----CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 345568999999999999 999999999999999999999988777899999999999999997643
No 8
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=122.98 Aligned_cols=61 Identities=30% Similarity=0.559 Sum_probs=56.5
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..+||+||||++++ +.++||++|++|++++|||+++. +.+.++|++|++||++|+||.+|.
T Consensus 6 ~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 6 SGDYYEILGVSRGA----SDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp SCCHHHHHTCCTTC----CHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHH
Confidence 46999999999999 99999999999999999999976 347899999999999999999885
No 9
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.71 E-value=9.9e-18 Score=126.89 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=58.5
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~-----~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
+...+||+||||++++ +.++||++||+|+++||||+++.. .+.+.++|++|++||++|+||.+|.
T Consensus 13 ~~~~~~y~iLgv~~~a----s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 82 (94)
T 1wjz_A 13 TLKKDWYSILGADPSA----NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK 82 (94)
T ss_dssp SSCSCHHHHTTCCTTC----CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred CCCCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4567999999999999 999999999999999999998742 2458899999999999999999885
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=125.39 Aligned_cols=61 Identities=34% Similarity=0.632 Sum_probs=56.5
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..+||+||||++++ |.++||++||+|++++|||+++. +.+.++|++|++||++|+||.+|.
T Consensus 6 ~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~ 66 (88)
T 2ctr_A 6 SGSYYDILGVPKSA----SERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRK 66 (88)
T ss_dssp CCSHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHH
Confidence 46999999999999 99999999999999999999985 348999999999999999999885
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.71 E-value=1e-17 Score=121.70 Aligned_cols=61 Identities=33% Similarity=0.590 Sum_probs=55.4
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
....+||+||||++++ |.++||++|++|++++|||++++. .+.|+.|++||++|+||.+|.
T Consensus 5 ~~~~~~y~iLgl~~~a----~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 5 VKETGYYDVLGVKPDA----SDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp -CCCCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred cCCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHH
Confidence 3457999999999999 999999999999999999999863 579999999999999999885
No 12
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=2.5e-17 Score=128.80 Aligned_cols=63 Identities=38% Similarity=0.547 Sum_probs=58.1
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...++|+||||++++ |.++||++|++|++++|||+++++++ +.++|++|++||++|+||.+|.
T Consensus 15 ~~~~~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~~-a~~~f~~i~~Ay~vL~d~~~R~ 77 (109)
T 2ctw_A 15 SGESLYHVLGLDKNA----TSDDIKKSYRKLALKYHPDKNPDNPE-AADKFKEINNAHAILTDATKRN 77 (109)
T ss_dssp CSCCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTSTTCHH-HHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHHcCHHHHH
Confidence 346999999999999 99999999999999999999987654 8999999999999999999885
No 13
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=1.5e-17 Score=121.87 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.5
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+||+||||++++ |.++||++|++|++++|||++++. .+.+.|+.|++||++|+||.+|.
T Consensus 3 ~~~y~iLgv~~~a----s~~~Ik~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 3 KDYYQTLGLARGA----SDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp CCSHHHHTCCTTC----CHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCHHHHH
Confidence 5899999999999 999999999999999999999763 27899999999999999999885
No 14
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=131.00 Aligned_cols=63 Identities=27% Similarity=0.469 Sum_probs=57.9
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+||+||||++++ +.++||++||+|+++||||+++++.. +.++|++|++||++|+||.+|.
T Consensus 18 ~~~d~Y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~vL~d~~~R~ 80 (112)
T 2ctq_A 18 DTEDYYTLLGCDELS----SVEQILAEFKVRALECHPDKHPENPK-AVETFQKLQKAKEILTNEESRA 80 (112)
T ss_dssp CCCCHHHHTTCCTTS----CHHHHHHHHHHHHHTTCTTTCTTCST-HHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence 347999999999999 99999999999999999999986543 8999999999999999999885
No 15
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=3.3e-17 Score=123.22 Aligned_cols=61 Identities=36% Similarity=0.635 Sum_probs=56.3
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..+||+||||++++ |.++||++||+|++++|||++++. .+.++|++|++||++|+||.+|.
T Consensus 16 ~~d~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 16 DFDPYRVLGVSRTA----SQADIKKAYKKLAREWHPDKNKDP--GAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp SSCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCCST--THHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCh--hHHHHHHHHHHHHHHHCCHHHHH
Confidence 46999999999999 999999999999999999999863 37899999999999999999885
No 16
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.8e-17 Score=124.71 Aligned_cols=61 Identities=30% Similarity=0.576 Sum_probs=55.7
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
....+||+||||++++ |.++||++|++|++++|||+++.+ .++|++|++||++|+||.+|.
T Consensus 5 ~~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 5 VKETKLYDLLGVSPSA----NEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp CSCCHHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred ccCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHH
Confidence 3457999999999999 999999999999999999999864 569999999999999999885
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.66 E-value=1.8e-17 Score=128.09 Aligned_cols=61 Identities=43% Similarity=0.758 Sum_probs=56.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+||+||||++++ |.++||++||+|++++|||+++.... ++++|++|++||++|+||.+|.
T Consensus 3 ~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~ 63 (103)
T 1bq0_A 3 QDYYEILGVSKTA----EEREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQKRA 63 (103)
T ss_dssp CCSTTTTSSCSSC----CHHHHHHHHHHHHTTTCTTTCTTTCT-HHHHHHHHTTTTTSTTCSHHHH
T ss_pred CCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence 5899999999999 99999999999999999999986443 7899999999999999999885
No 18
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.66 E-value=4.5e-17 Score=120.73 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=54.1
Q ss_pred ccccchhcccCCC--CCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 173 LSHHYSVLGLDRL--RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 173 ~~d~Y~ILGl~~~--a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
..++|+||||+++ + |.++||++||+|++++|||++++ .++|++|++||++|+|+.+|..
T Consensus 10 ~~~~y~iLgl~~~~~a----~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 10 KERLLELLKLPRQLWG----DFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHHHTCCSSSTT----CHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHH
Confidence 3689999999999 8 99999999999999999999865 6899999999999999988764
No 19
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.4e-16 Score=115.71 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=53.3
Q ss_pred CCCccccchhcccCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhh
Q 026279 170 SYSLSHHYSVLGLDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 238 (241)
Q Consensus 170 ~~~~~d~Y~ILGl~~-~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR 238 (241)
.++..++|+||||++ ++ |.++||++||+|++++|||++++ .++|++|++||++|+++..|
T Consensus 10 ~m~~~~~y~iLgl~~~~a----~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 10 KMNSKEALQILNLTENTL----TKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp SCCHHHHHHHTTCCTTTC----CHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHcCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence 345679999999998 68 99999999999999999999754 56999999999999998655
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=129.30 Aligned_cols=64 Identities=22% Similarity=0.399 Sum_probs=57.6
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK-----EAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~-----~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+||+||||++++ +.++||++||+|++++|||+++... +.+.++|+.|++||++|+||.+|.
T Consensus 8 ~~~~~y~iLgv~~~a----~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~ 76 (155)
T 2l6l_A 8 PKKDWYSILGADPSA----NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR 76 (155)
T ss_dssp CCSHHHHHHTCCTTC----CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred CCCChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 447999999999999 9999999999999999999987542 347899999999999999999985
No 21
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.62 E-value=2.4e-16 Score=133.05 Aligned_cols=61 Identities=33% Similarity=0.585 Sum_probs=56.8
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.|||+||||++++ |.++||+|||+|++++|||+++++.+ +.++|+.|++||++|+||.+|.
T Consensus 2 ~~~y~~l~~~~~a----~~~~ik~ay~~l~~~~HPD~~~~~~~-~~~~f~~i~~Ay~~L~~~~~r~ 62 (210)
T 3apq_A 2 QNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLRK 62 (210)
T ss_dssp CCHHHHHTCCTTC----CHHHHHHHHHHHHHHHCGGGCTTCTT-HHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCChH-HHHHHHHHHHHHHHhCCHHHHH
Confidence 6899999999999 99999999999999999999976554 7899999999999999999885
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.61 E-value=3.9e-16 Score=121.54 Aligned_cols=65 Identities=29% Similarity=0.592 Sum_probs=57.4
Q ss_pred CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~--~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
...+||+||||++++ +|.++||++||+|++++|||++++ ..+.+.++|++|++||++|+||.+|.
T Consensus 13 ~~~~~y~iLgv~~~a---~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 13 GLENCYDVLEVNREE---FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp TTSCHHHHTTCCGGG---CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC---CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 347999999999875 499999999999999999999975 23458999999999999999999885
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.60 E-value=1.1e-16 Score=126.73 Aligned_cols=58 Identities=29% Similarity=0.462 Sum_probs=54.0
Q ss_pred cccchhcccCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 174 SHHYSVLGLDRLRKAPYTE--AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~--~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
.++|+||||++++ +. ++||+|||+|++++|||++++ .++|++|++||+||+||.+|..
T Consensus 8 ~~~Y~iLgv~~~a----s~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~ 67 (114)
T 1gh6_A 8 LQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH 67 (114)
T ss_dssp HHHHHHTTCCTTS----CSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHH
Confidence 6899999999998 77 999999999999999999886 5799999999999999999874
No 24
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.60 E-value=2.1e-16 Score=120.91 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=51.7
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcC
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQ 234 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~d 234 (241)
.++|++|||++.+ |.++||+|||+++++||||+++++. ..|+++|++|++||++|++
T Consensus 33 ~~~y~~Lgv~~~a----s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS----SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 4789999999999 9999999999999999999998653 3488999999999999975
No 25
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.58 E-value=1.4e-15 Score=128.18 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=56.4
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~----~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+||+||||++++ +++..+||++||+|+++||||++++..+ .+.++|+.|++||++|+||.+|.
T Consensus 4 ~d~Y~iLgl~~~a--~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 71 (174)
T 3hho_A 4 MNYFELFGLPIQF--ELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRA 71 (174)
T ss_dssp CCHHHHTTCCSSS--CCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCHHHHcCcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 6999999999987 3349999999999999999999876532 37789999999999999999885
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.57 E-value=1.1e-15 Score=130.10 Aligned_cols=63 Identities=19% Similarity=0.366 Sum_probs=57.1
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
.++|+||||++.+ |.++||+|||+|++++|||++++.. ..|+++|++|++||++|+||.+|..
T Consensus 117 ~d~Y~vLgv~~~A----s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~ 181 (182)
T 1n4c_A 117 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL 181 (182)
T ss_dssp CCCCCCCCGGGGS----SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cchhhcCCCCCCC----CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhh
Confidence 5899999999999 9999999999999999999987543 2378999999999999999999863
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.56 E-value=2.3e-15 Score=126.53 Aligned_cols=63 Identities=13% Similarity=0.310 Sum_probs=56.2
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcChhhhc
Q 026279 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~----~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
+||+||||++++ .+|..+||++||+|+++||||++++..+ .|.++|+.|++||++|+||.+|.
T Consensus 2 d~y~lLgl~~~a--~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 68 (171)
T 1fpo_A 2 DYFTLFGLPARY--QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA 68 (171)
T ss_dssp HHHHHTTCCSSS--CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 799999999876 5699999999999999999999876532 36789999999999999999985
No 28
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.55 E-value=7.2e-16 Score=120.48 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=51.4
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C---hHHHHHHHHHHHHHHHHhcChh
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQER 236 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~---~---~~~a~ekF~~I~~AYevL~dp~ 236 (241)
.+||+|||++. + |.++||+|||+|+++|||||+++ + ...|+++|++|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-A----s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-I----EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-C----SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-C----CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 68999999996 8 99999999999999999999763 2 2247899999999999999985
No 29
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.53 E-value=6.8e-16 Score=141.79 Aligned_cols=65 Identities=35% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
.+...|||+||||++++ |.++||+|||+|+++||||++++. .|+++|++|++||++|+||.+|..
T Consensus 24 ~m~~~d~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vL~d~~~R~~ 88 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTD----DLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRRAE 88 (329)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCCCCCCCh--HHHHHHHHHHHHHHHhhhhhhhcc
Confidence 34567999999999999 999999999999999999999863 489999999999999999999863
No 30
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=127.61 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=56.2
Q ss_pred ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~----~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
..+||+||||++.+ .+|..+||++||+|++++|||++++.. ..|.++|+.|++||++|+||.+|.
T Consensus 42 ~~d~y~lLgv~~~~--~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~ 110 (207)
T 3bvo_A 42 TRDYFSLMDCNRSF--RVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG 110 (207)
T ss_dssp TCCHHHHTTSCSCS--CCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 36999999999863 239999999999999999999987642 346789999999999999999985
No 31
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.48 E-value=3.3e-15 Score=126.25 Aligned_cols=58 Identities=29% Similarity=0.451 Sum_probs=50.8
Q ss_pred cccchhcccCCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279 174 SHHYSVLGLDRLRKAPYT--EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 240 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t--~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~ 240 (241)
.++|+||||++++ + .++||+|||+|++++|||++++ .++|++|++||++|+||.+|..
T Consensus 11 ~d~Y~vLGl~~~a----s~~~~eIKkAYRkLa~~~HPDk~~~-----~e~F~~I~~AYevLsdp~kR~~ 70 (174)
T 2pf4_E 11 LQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH 70 (174)
T ss_dssp HHHHHTTTCCGGG----TTCHHHHHHHHHHHGGGCSCC---C-----CTTTTHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999999998 6 6999999999999999999876 4789999999999999999863
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.46 E-value=1.7e-14 Score=122.46 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=53.7
Q ss_pred Cccccchhc------ccCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 172 SLSHHYSVL------GLDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 172 ~~~d~Y~IL------Gl~~-~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.+.+||+|| |+++ ++ |..+||++||+|+++||||++++ +.++|+.|++||++|+||.+|.
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a----~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~ 75 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTI----DQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRS 75 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCC----CHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCC----CHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHH
Confidence 357999999 4665 56 99999999999999999999987 5789999999999999999885
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.36 E-value=7.5e-14 Score=138.37 Aligned_cols=64 Identities=31% Similarity=0.527 Sum_probs=35.0
Q ss_pred CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279 171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
....+||+||||++++ |.++||+|||+|+++||||+++++.+ +.++|++|++||++|+||.+|.
T Consensus 18 ~~~~~~y~~lg~~~~a----~~~~i~~ay~~l~~~~hpd~~~~~~~-~~~~f~~i~~ay~~L~~~~~r~ 81 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLRK 81 (780)
T ss_dssp -----CHHHHTCCTTC----CHHHHHHHHCC------------------------CTHHHHHHSHHHHH
T ss_pred CCCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCChH-HHHHHHHHHHHHHHHcChHHHH
Confidence 3446999999999999 99999999999999999999976543 8899999999999999999885
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.98 E-value=4.6e-10 Score=80.43 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=48.9
Q ss_pred CccccchhcccCCC---CCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChh
Q 026279 172 SLSHHYSVLGLDRL---RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236 (241)
Q Consensus 172 ~~~d~Y~ILGl~~~---a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~ 236 (241)
+..++|.||||+++ + +.++|+++||+|....|||++++ .-...+|+.|+++|..+.
T Consensus 2 t~~EA~~ILgv~~~~~~a----~~~~Ik~~yr~Lm~~nhPDkGGS-----~yl~~ki~~Ake~l~~~~ 60 (65)
T 2guz_B 2 TLDESCKILNIEESKGDL----NMDKINNRFNYLFEVNDKEKGGS-----FYLQSKVYRAAERLKWEL 60 (65)
T ss_dssp CHHHHHHHTTCCGGGTCC----SHHHHHHHHHHHHHHTCGGGTCC-----HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCcCcC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHHH
Confidence 45689999999998 7 99999999999999999999865 566778999999997543
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.81 E-value=3.1e-09 Score=94.60 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=56.2
Q ss_pred cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcChhhhc
Q 026279 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM 239 (241)
Q Consensus 174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~dp~kR~ 239 (241)
.++|.+||+...+ +.++|+++|+++++++|||+.+.+. +.+.++|+.|++||++|+||.+|.
T Consensus 382 ~~~y~~lg~~~~~----~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 382 RDYYKILGVKRNA----KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSGGGSCSSTTC----CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hhHHHHhCCCccC----CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3899999999998 9999999999999999999998653 568999999999999999999985
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=78.47 E-value=1.1 Score=43.35 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=34.1
Q ss_pred ccchhcccCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Q 026279 175 HHYSVLGLDRLRKAPYTE--AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEA 231 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~--~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYev 231 (241)
++|.|||++... .. .+|+++||+|++..+++ .+++..|..|+.|
T Consensus 630 ~~~~~lG~~~~~----~~lr~~~~~ayr~la~~~~~~---------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 630 STNHILGFPFTS----HGLRLGVEASLRSLARVAPTQ---------RHRYTLVDMANKV 675 (681)
T ss_dssp SSSEETTEESSH----HHHHHHHHHHHHHHHHHCSSH---------HHHHHHHHHHHHH
T ss_pred CCcccCCCCCCh----HHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHhccc
Confidence 589999996654 33 56999999999966544 4678888888876
No 37
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=73.38 E-value=2.2 Score=26.78 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhHhhhh---HHHHH
Q 026279 33 FLFGLIGATATTFAVG---QLRKT 53 (241)
Q Consensus 33 ~~~~~i~~~~~~~~v~---q~~r~ 53 (241)
.|+|+|-.|++|+.|. |..||
T Consensus 9 IVlGlipvtlaGLfv~Ay~QyrRg 32 (37)
T 1q90_G 9 IVLGLVPVTIAGLFVTAYLQYLRG 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhc
Confidence 4678888899988886 76665
No 38
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=68.69 E-value=1.9 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHhhhh---HHHHH
Q 026279 34 LFGLIGATATTFAVG---QLRKT 53 (241)
Q Consensus 34 ~~~~i~~~~~~~~v~---q~~r~ 53 (241)
|+|+|-.|++|+.|. |.+||
T Consensus 10 VlGlipvtl~GLfv~Ay~QyrRg 32 (37)
T 1vf5_G 10 VLGLVFATLGGLFYAAYQQYKRP 32 (37)
T ss_dssp HHHHHHHHHHHHTHHHHHHTCC-
T ss_pred HHhhHHHHHHHHHHHHHHHHhhc
Confidence 678888888888886 65554
No 39
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=33.06 E-value=14 Score=29.45 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=4.0
Q ss_pred CCCCCCCCcccccchhHHH-HHHHHHHHHHhhhHhhhh
Q 026279 12 NPWPSPNGPQQEKADVKLW-GVFLFGLIGATATTFAVG 48 (241)
Q Consensus 12 ~~~~~~~~~~~~~g~~k~~-g~~~~~~i~~~~~~~~v~ 48 (241)
+.|..|+-+ |...|-+ |++.+|+|+..++|.++|
T Consensus 8 ~~w~kp~k~---Ktn~k~vAgaAaAGAVvGGlgGy~lG 42 (142)
T 3heq_A 8 SQWNKPSKP---KTNMKHMAGAAAAGAVVGGLGGYMLG 42 (142)
T ss_dssp --------------------------------CCCEEC
T ss_pred cccCCCCCC---cccHHHHHHHHHhhhhhhccchHHHH
Confidence 446555432 4444555 666667777777777773
No 40
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=26.03 E-value=50 Score=23.80 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=5.3
Q ss_pred HHHHHHhhhHhhhh
Q 026279 35 FGLIGATATTFAVG 48 (241)
Q Consensus 35 ~~~i~~~~~~~~v~ 48 (241)
|+++.+.+...++|
T Consensus 38 ~~~~~~lv~l~~iG 51 (77)
T 2dw3_A 38 FGTLLLIGFFRVVG 51 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333343
No 41
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=25.01 E-value=57 Score=21.93 Aligned_cols=32 Identities=28% Similarity=0.539 Sum_probs=19.0
Q ss_pred CCCCCCcccccc---hhHHHHHHHHHHHHHhhhHh
Q 026279 14 WPSPNGPQQEKA---DVKLWGVFLFGLIGATATTF 45 (241)
Q Consensus 14 ~~~~~~~~~~~g---~~k~~g~~~~~~i~~~~~~~ 45 (241)
||+....-+|.. .+-++++++.+++|+.+..+
T Consensus 22 wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~li 56 (65)
T 3bo0_B 22 WPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVP 56 (65)
T ss_dssp CTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666644445555 56666777777766655443
No 42
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=24.30 E-value=1.3e+02 Score=19.88 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhh
Q 026279 197 TAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237 (241)
Q Consensus 197 kAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~k 237 (241)
+..|...+.-||+...+ ..+..+.|.+.|..|+++++
T Consensus 14 ~~~r~~~~~~~p~~~~~----~~eisk~lg~~Wk~ls~~eK 50 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVN----FSEFSKKCSERWKTMSAKEK 50 (71)
T ss_dssp HHHHHHHHHHCTTCCCC----HHHHHHHHHHHHHTCCTTTS
T ss_pred HHHHHHHHHHCCCCCCc----HHHHHHHHHHHHhhCCHHHH
Confidence 44566667788987543 35677888899999987764
No 43
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=24.27 E-value=55 Score=22.39 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=18.6
Q ss_pred ccccchhHHHHHHHHHHHHHhhhHhh
Q 026279 21 QQEKADVKLWGVFLFGLIGATATTFA 46 (241)
Q Consensus 21 ~~~~g~~k~~g~~~~~~i~~~~~~~~ 46 (241)
......+-|+|+++.|+||-.+--+.
T Consensus 30 f~~iak~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 30 YKRAAKITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888887765443
No 44
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=21.39 E-value=44 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=27.2
Q ss_pred ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 026279 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQ 210 (241)
Q Consensus 175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk 210 (241)
-++..|.|.... +.++++++=..+..++|||=
T Consensus 33 ~~l~~k~ig~~I----ts~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTI----TSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEE----EHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCccc----CHHHHHHHHHHHHHhcCCCc
Confidence 457777887666 99999999999999999983
Done!