Query 026282
Match_columns 241
No_of_seqs 134 out of 850
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xtc_A F-box-like/WD repeat-co 95.5 0.015 5.1E-07 41.5 4.2 34 37-70 2-35 (90)
2 1uuj_A Platelet-activating fac 95.4 0.019 6.4E-07 40.8 4.3 54 40-98 10-63 (88)
3 2d68_A FOP, FGFR1OP; alpha hel 89.1 0.78 2.7E-05 31.9 5.3 34 41-74 19-54 (82)
4 1vyh_C Platelet-activating fac 88.6 0.083 2.8E-06 46.6 0.0 53 40-98 8-61 (410)
5 2nxp_A Transcription initiatio 84.1 1.3 4.4E-05 34.5 4.7 65 95-163 34-99 (156)
6 2j4b_A TAF5, transcription ini 65.7 14 0.00047 28.0 5.9 62 96-162 16-78 (138)
7 2xz2_A CSTF-50, isoform B; RNA 63.1 7.6 0.00026 25.7 3.4 32 39-70 15-46 (66)
8 2j49_A Transcription initiatio 56.1 6.6 0.00022 30.2 2.5 61 96-161 18-79 (148)
9 3u4t_A TPR repeat-containing p 48.2 93 0.0032 24.0 9.5 54 85-143 83-136 (272)
10 2cp9_A EF-TS, EF-TSMT, elongat 47.9 49 0.0017 21.6 5.4 34 60-102 13-48 (64)
11 3u3w_A Transcriptional activat 40.2 1.2E+02 0.0041 24.3 8.2 86 57-143 46-143 (293)
12 2y4t_A DNAJ homolog subfamily 37.9 1.8E+02 0.0061 24.4 11.0 59 83-142 264-322 (450)
13 3q15_A PSP28, response regulat 37.2 80 0.0028 26.4 6.8 29 38-66 7-37 (378)
14 3ieg_A DNAJ homolog subfamily 34.8 1.7E+02 0.0058 23.2 12.8 59 41-101 154-213 (359)
15 1oyi_A Double-stranded RNA-bin 32.2 22 0.00074 24.5 1.8 47 39-92 14-60 (82)
16 2eap_A Lymphocyte cytosolic pr 31.3 38 0.0013 23.7 2.9 24 46-70 26-49 (90)
17 3mkq_A Coatomer beta'-subunit; 29.0 2.3E+02 0.0078 26.1 9.0 77 40-139 629-705 (814)
18 2xpi_A Anaphase-promoting comp 28.3 3E+02 0.01 24.0 10.7 110 28-140 105-225 (597)
19 3mkr_A Coatomer subunit epsilo 27.5 2.4E+02 0.0083 22.7 11.7 94 37-142 61-157 (291)
20 2v5f_A Prolyl 4-hydroxylase su 27.4 1.4E+02 0.0049 20.0 7.0 59 84-142 13-73 (104)
21 4a18_Q RPL36, 60S ribosomal pr 25.7 64 0.0022 23.1 3.4 32 115-146 51-85 (104)
22 1xmk_A Double-stranded RNA-spe 25.5 26 0.0009 23.8 1.3 47 41-93 10-57 (79)
23 2dna_A Unnamed protein product 25.0 29 0.00099 22.9 1.4 17 88-104 44-60 (67)
24 4gcn_A Protein STI-1; structur 24.7 1.7E+02 0.006 20.1 11.3 94 48-144 15-112 (127)
25 2y4t_A DNAJ homolog subfamily 23.7 3.2E+02 0.011 22.7 10.2 112 25-143 11-122 (450)
26 1a17_A Serine/threonine protei 23.0 1.9E+02 0.0065 19.9 11.8 13 88-100 93-105 (166)
27 4b4t_R RPN7, 26S proteasome re 23.0 2.5E+02 0.0085 24.6 7.7 102 41-145 131-238 (429)
28 3sxm_A Transcriptional regulat 21.9 1.1E+02 0.0036 21.8 4.3 27 76-102 99-125 (140)
29 2bwb_A Ubiquitin-like protein 21.6 39 0.0014 20.3 1.4 13 88-100 32-44 (46)
30 1whc_A RSGI RUH-027, UBA/UBX 3 21.1 1E+02 0.0035 19.7 3.5 17 89-105 35-51 (64)
31 2ho1_A Type 4 fimbrial biogene 21.1 2.7E+02 0.0092 20.9 13.5 55 85-142 114-168 (252)
32 2knz_A Ubiquilin-4; cytoplasm, 20.5 1.1E+02 0.0038 18.7 3.4 16 88-103 36-51 (53)
33 1bpo_A Protein (clathrin); cla 20.2 2.2E+02 0.0076 26.1 6.6 102 35-143 326-441 (494)
34 1v85_A Similar to ring finger 20.0 1.5E+02 0.0052 20.1 4.5 26 44-70 22-49 (91)
No 1
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=95.49 E-value=0.015 Score=41.48 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026282 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (241)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~ 70 (241)
.++.+++|.||..||...||..||-+|.+|+++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999877
No 2
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.35 E-value=0.019 Score=40.77 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026282 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEK 98 (241)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~ 98 (241)
+++|++-|++||..+||.+++.+|.+|++++..+.. ..-...+++.+|..++.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~-----~~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEEL-----DKKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHH-----HHHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchh-----hhhhhhhhhhhHHHHHHH
Confidence 468999999999999999999999999988722221 112444666666665543
No 3
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=89.10 E-value=0.78 Score=31.94 Aligned_cols=34 Identities=21% Similarity=0.043 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCC--cCcH
Q 026282 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE--HIDL 74 (241)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~--~~d~ 74 (241)
..++.||.+||...||.=|...|..|+|.+ +.+.
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~~~~R 54 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGR 54 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC---CCH
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCCCCCCH
Confidence 458899999999999999999999999997 4444
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=88.65 E-value=0.083 Score=46.62 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC-cCcHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026282 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEK 98 (241)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~-~~d~~~~~~r~~I~~~I~~G~~~~Ai~~ 98 (241)
+++++++|++||..+||.+++.+|.+|.+++ ... .......+.++.|+..+..
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence 5789999999999999999999999999876 111 1234455677888777664
No 5
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=84.13 E-value=1.3 Score=34.51 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=45.2
Q ss_pred HHHHHHhhChhhhh-cCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhhh
Q 026282 95 AIEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALL 163 (241)
Q Consensus 95 Ai~~i~~~~p~l~~-~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL 163 (241)
-..|++..- ...+ .=..+.|=+.++-|++|+..|...+|-.|..++-.-+...+ ...++++.++.
T Consensus 34 L~~wv~~sl-d~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~ 99 (156)
T 2nxp_A 34 LKHFIECSL-DCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLT 99 (156)
T ss_dssp HHHHHHTSC-HHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCC
T ss_pred HHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCC
Confidence 356776642 2222 12568999999999999999999999999997765554333 55666655543
No 6
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=65.66 E-value=14 Score=27.96 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHHhhChhhhhc-CCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhhh
Q 026282 96 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL 162 (241)
Q Consensus 96 i~~i~~~~p~l~~~-~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~L 162 (241)
.+|++.. +++.+. =..+.|=+.++-|++|+.+|...+|-.|..++-.-+... ..+++.+.++
T Consensus 16 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~----~~~i~~L~~i 78 (138)
T 2j4b_A 16 KTWIEDS-LDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK----SEEIKQFESI 78 (138)
T ss_dssp HHHHHHS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C----HHHHHHHTTC
T ss_pred HHHHHhC-cHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH----HHHHHHHhcC
Confidence 5677653 222221 156899999999999999999999999998765544321 4556654443
No 7
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=63.09 E-value=7.6 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026282 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (241)
Q Consensus 39 ~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~ 70 (241)
+|+.|=|||..-|..-||...|..|....+..
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~ 46 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKAD 46 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 37889999999999999999999999998866
No 8
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=56.06 E-value=6.6 Score=30.20 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=39.5
Q ss_pred HHHHHhhChhhhhc-CCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhccccccCCHHHHHHHHHHhh
Q 026282 96 IEKVNDLNPEILDT-NPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 161 (241)
Q Consensus 96 i~~i~~~~p~l~~~-~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~ 161 (241)
.+|++..- ++.+. =..+.|=+.++-|++|+..| ..+|-.|..++-.-+.. ....+++.+.+
T Consensus 18 r~wv~~sl-d~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~---~~~~~i~~L~~ 79 (148)
T 2j49_A 18 KNWVDSSL-EIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKD---FHGSEINRLFS 79 (148)
T ss_dssp HHHHHTSC-TTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHH---HHHHHHHTTTT
T ss_pred HHHHHhCc-HhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHH---HHHHHHHHHhc
Confidence 46666532 21111 14589999999999999999 99999999876544432 22345554433
No 9
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=48.24 E-value=93 Score=24.02 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHhcCCHHHHHHHHHhhChhhhhcCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 026282 85 KAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 143 (241)
Q Consensus 85 ~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~ 143 (241)
-....|+++.|+..++..- +.++.. ...+...-.-+...|+..+|+.+.++-+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAV----DRDTTR-LDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHH----HHSTTC-THHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHcccHHHHHHHHHHHH----hcCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 3456677777777776432 222111 12222222223456777777777776554
No 10
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=47.92 E-value=49 Score=21.56 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCcCcHHhHHHHHHHHHHH--hcCCHHHHHHHHHhh
Q 026282 60 AEKFRMESGTEHIDLATITDRMAVKKAV--QCGNVEDAIEKVNDL 102 (241)
Q Consensus 60 a~~l~~es~~~~~d~~~~~~r~~I~~~I--~~G~~~~Ai~~i~~~ 102 (241)
.+.|.+.+|.. +..-+.+| .+||++.|+.|+.+.
T Consensus 13 Vk~LRe~TGag---------~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 13 LMKLRRKTGYS---------FVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHCCC---------HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---------HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34555666654 23344444 468999999999764
No 11
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=40.24 E-value=1.2e+02 Score=24.31 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCC---------cCcHHhHH-HHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhhHHHHHHH--
Q 026282 57 VDAAEKFRMESGTE---------HIDLATIT-DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE-- 124 (241)
Q Consensus 57 ~~ta~~l~~es~~~---------~~d~~~~~-~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L~~q~fIE-- 124 (241)
.++...+++..|++ ..+.+... ....+...+..|+++.|+..+++.-.. ....+.....+.....+-
T Consensus 46 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~ 124 (293)
T 3u3w_A 46 MDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHH
Confidence 34556666666665 11222222 234577888899999999888763211 011111111111111111
Q ss_pred HHhcCCHHHHHHHHHHhcc
Q 026282 125 LIRNGKVEEALEFAQEELA 143 (241)
Q Consensus 125 li~~~~~~~Al~~~r~~l~ 143 (241)
....++.++|+.+.++-+.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHH
Confidence 2245688899998888765
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=37.86 E-value=1.8e+02 Score=24.35 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhc
Q 026282 83 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142 (241)
Q Consensus 83 I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l 142 (241)
..-....|++++|+.+++..-. +...++.....++...-.-+.+.|+..+|+.+.++-+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445677888888877765321 1111111112222222222445677777777777643
No 13
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=37.18 E-value=80 Score=26.41 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHH--HHhCHHHHHHHHHHH
Q 026282 38 IRKEDMNKLVMNFL--VTEGYVDAAEKFRME 66 (241)
Q Consensus 38 ~~~~~l~~LI~~yL--~~~Gy~~ta~~l~~e 66 (241)
++...+..+|-+|- +..+..+.|..+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34666777777665 666666666666554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=34.77 E-value=1.7e+02 Score=23.20 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCHHHHH-HHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 026282 41 EDMNKLVMNFLVTEGYVDAA-EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVND 101 (241)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta-~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~ 101 (241)
......+...+...|-.+.| ..|.+-....+.+......+ -.-....|+++.|+..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI--STLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH--HHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHH
Confidence 33444445555555544433 33333333332222222111 1222345566666555543
No 15
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.22 E-value=22 Score=24.47 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCH
Q 026282 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNV 92 (241)
Q Consensus 39 ~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~ 92 (241)
+-..+.+-|+++|..+| -++..++++.|+.. -.-|+++..+-.+|-+
T Consensus 14 ~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk-----~aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEK-----REVNKALYDLQRSAMV 60 (82)
T ss_dssp CSHHHHHHHHHHHSSST--EEHHHHHHHSSSCH-----HHHHHHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHcC--CCHHHHHHHHCcCH-----HHHHHHHHHHHHCCCE
Confidence 45667788889999999 99999999999861 1235556666565543
No 16
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.26 E-value=38 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHHHhCHHHHHHHHHHHhCCC
Q 026282 46 LVMNFLVTEGYVDAAEKFRMESGTE 70 (241)
Q Consensus 46 LI~~yL~~~Gy~~ta~~l~~es~~~ 70 (241)
=|++||...||.+ ++.|++...++
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHcCCch-HHHHHHHhccC
Confidence 5889999999999 89998777665
No 17
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=28.97 E-value=2.3e+02 Score=26.13 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhhHH
Q 026282 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 119 (241)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L~~ 119 (241)
...+ .-++.||...|+.+-|..+.++. ..++..++..|+++.|.+.+...... .+.+
T Consensus 629 ~~~~-~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~~~~----------~~W~ 685 (814)
T 3mkq_A 629 KDSL-TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDESAE----------MKWR 685 (814)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTCCCH----------HHHH
T ss_pred hHHH-HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhhCcH----------hHHH
Confidence 4444 77788999999999988875322 34577789999999999998765422 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 026282 120 QRLIELIRNGKVEEALEFAQ 139 (241)
Q Consensus 120 q~fIEli~~~~~~~Al~~~r 139 (241)
+-=-..++.++++.|..+-+
T Consensus 686 ~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 22222344666666666555
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=28.31 E-value=3e+02 Score=24.04 Aligned_cols=110 Identities=17% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhh-
Q 026282 28 EWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEI- 106 (241)
Q Consensus 28 ~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l- 106 (241)
.+.+++.+...+......+..-|.....+.++...|.+-... ..+.......+.-....|++++|++.+++..|.-
T Consensus 105 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 181 (597)
T 2xpi_A 105 FVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181 (597)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccc
Q ss_pred ----------hhcCCcchhhhHHHHHHHHHhcCCHHHHHHHHHH
Q 026282 107 ----------LDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQE 140 (241)
Q Consensus 107 ----------~~~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~ 140 (241)
...........+...-.-+.+.|+.++|+.+.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp ---------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=27.48 E-value=2.4e+02 Score=22.72 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHH-HHHHHHh--CCCcCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcc
Q 026282 37 KIRKEDMNKLVMNFLVTEGYVDAA-EKFRMES--GTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQL 113 (241)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta-~~l~~es--~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l 113 (241)
+.+.-....++.+|+...|-.+.| ..|.+-. +..+.+.... ...=.-....|++++|+++++. | ...
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--~~la~~~~~~g~~~~Al~~l~~--~------~~~ 130 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL--LMAASIYFYDQNPDAALRTLHQ--G------DSL 130 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--HHHHHHHHHTTCHHHHHHHHTT--C------CSH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHCCCHHHHHHHHhC--C------CCH
Confidence 333344567788888888854444 5554422 2222222221 1111234578999999998876 2 112
Q ss_pred hhhhHHHHHHHHHhcCCHHHHHHHHHHhc
Q 026282 114 FFHLQQQRLIELIRNGKVEEALEFAQEEL 142 (241)
Q Consensus 114 ~F~L~~q~fIEli~~~~~~~Al~~~r~~l 142 (241)
. .+...-.=+.+.|+.++|+...++-+
T Consensus 131 ~--~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 131 E--CMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp H--HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 11111222456788888888877643
No 20
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=27.38 E-value=1.4e+02 Score=19.99 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=35.3
Q ss_pred HHHHhcCCHHHHHHHHHhhChhhhhcC--CcchhhhHHHHHHHHHhcCCHHHHHHHHHHhc
Q 026282 84 KKAVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142 (241)
Q Consensus 84 ~~~I~~G~~~~Ai~~i~~~~p~l~~~~--~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l 142 (241)
..+...|++..|+.|.+.--....... ..-.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345678999999999986432221111 11122233332333457789999999988754
No 21
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=25.68 E-value=64 Score=23.15 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhcCC---HHHHHHHHHHhccccc
Q 026282 115 FHLQQQRLIELIRNGK---VEEALEFAQEELAPRG 146 (241)
Q Consensus 115 F~L~~q~fIEli~~~~---~~~Al~~~r~~l~p~~ 146 (241)
|-=+..+.+||++.+. --.|+.|+++.+..+.
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~ 85 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHR 85 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHH
Confidence 4556778999999998 7899999999887664
No 22
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=25.48 E-value=26 Score=23.76 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcCcHHhH-HHHHHHHHHHhcCCHH
Q 026282 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATI-TDRMAVKKAVQCGNVE 93 (241)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~~~d~~~~-~~r~~I~~~I~~G~~~ 93 (241)
.....-|++||..+| .-||..++++.|++ .. .-|+.+..+-.+|-+.
T Consensus 10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit-----~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 10 AEIKEKICDYLFNVS-DSSALNLAKNIGLT-----KARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHHTC-CEEHHHHHHHHCGG-----GHHHHHHHHHHHHHTTSEE
T ss_pred hhHHHHHHHHHHHcC-CcCHHHHHHHcCCC-----cHHHHHHHHHHHHHCCCEE
Confidence 457788999999999 56799999999986 22 3466777766777665
No 23
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.97 E-value=29 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.0
Q ss_pred hcCCHHHHHHHHHhhCh
Q 026282 88 QCGNVEDAIEKVNDLNP 104 (241)
Q Consensus 88 ~~G~~~~Ai~~i~~~~p 104 (241)
..||++.|++|+-.+.+
T Consensus 44 t~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 44 TDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp TTSCHHHHHHHHHHCCS
T ss_pred cCCCHHHHHHHHHhCCC
Confidence 46899999999987654
No 24
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=24.72 E-value=1.7e+02 Score=20.09 Aligned_cols=94 Identities=7% Similarity=0.081 Sum_probs=50.1
Q ss_pred HHHHHHhC-HHHHHHHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCCcchhhh---HHHHHH
Q 026282 48 MNFLVTEG-YVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL---QQQRLI 123 (241)
Q Consensus 48 ~~yL~~~G-y~~ta~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L---~~q~fI 123 (241)
..-+...| |.++...|.+...+.+.+...+..+-.+ ....|++++|++.++.-- .+..........+ +...=.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~--~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAV--YFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHH--HHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHHHH
Confidence 33344444 5555566666555555555444444333 457899999999887531 1111111111111 111111
Q ss_pred HHHhcCCHHHHHHHHHHhccc
Q 026282 124 ELIRNGKVEEALEFAQEELAP 144 (241)
Q Consensus 124 Eli~~~~~~~Al~~~r~~l~p 144 (241)
-....|+..+|+++.++-+..
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 133568999999998887653
No 25
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=23.72 E-value=3.2e+02 Score=22.73 Aligned_cols=112 Identities=15% Similarity=0.106 Sum_probs=56.2
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhCh
Q 026282 25 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNP 104 (241)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p 104 (241)
....|.+.+..-+.+......+...|+....|.++...|.+-....+.+...+ .....-....|+++.|+..+...-
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al- 87 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAY--YRRATVFLAMGKSKAALPDLTKVI- 87 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHH--HHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 34455555544444444455565566655556666666665544333333222 333445678899999999887532
Q ss_pred hhhhcCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 026282 105 EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 143 (241)
Q Consensus 105 ~l~~~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l~ 143 (241)
+.++.. ...+...-.-+.+.|+..+|+.+.++-+.
T Consensus 88 ---~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 88 ---QLKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp ---HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---hcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222221 11222222224567899999999887654
No 26
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=23.05 E-value=1.9e+02 Score=19.94 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=6.2
Q ss_pred hcCCHHHHHHHHH
Q 026282 88 QCGNVEDAIEKVN 100 (241)
Q Consensus 88 ~~G~~~~Ai~~i~ 100 (241)
..|++++|+.++.
T Consensus 93 ~~~~~~~A~~~~~ 105 (166)
T 1a17_A 93 ALGKFRAALRDYE 105 (166)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 3455555554443
No 27
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.96 E-value=2.5e+02 Score=24.62 Aligned_cols=102 Identities=16% Similarity=0.028 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHh-----CCCcCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc-CCcch
Q 026282 41 EDMNKLVMNFLVTEGYVDAAEKFRMES-----GTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT-NPQLF 114 (241)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~l~~es-----~~~~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~-~~~l~ 114 (241)
.+...-.++|+...|-.+.|...-.+. +.. .-.+ -....|+-++..|||..|...+++......+. +....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid--~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKID--VMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 345556788888888555443332222 111 1111 23567888999999999999998875443332 23344
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhcccc
Q 026282 115 FHLQQQRLIELIRNGKVEEALEFAQEELAPR 145 (241)
Q Consensus 115 F~L~~q~fIEli~~~~~~~Al~~~r~~l~p~ 145 (241)
-.+++..=+-.+..++..+|-.+..+-+..+
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4455555555556678888777666554444
No 28
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=21.89 E-value=1.1e+02 Score=21.78 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 026282 76 TITDRMAVKKAVQCGNVEDAIEKVNDL 102 (241)
Q Consensus 76 ~~~~r~~I~~~I~~G~~~~Ai~~i~~~ 102 (241)
.+.+-..|.++|.+||.+.|...+..|
T Consensus 99 ~~~eH~~I~~Ai~~~D~~~A~~~~~~H 125 (140)
T 3sxm_A 99 SNREHKELIERIISGDKEGAIEKLKEH 125 (140)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556677777777777777666654
No 29
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.62 E-value=39 Score=20.27 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.6
Q ss_pred hcCCHHHHHHHHH
Q 026282 88 QCGNVEDAIEKVN 100 (241)
Q Consensus 88 ~~G~~~~Ai~~i~ 100 (241)
..||++.|++|+-
T Consensus 32 ~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 32 SGGSVQGALDSLL 44 (46)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 5689999999874
No 30
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.08 E-value=1e+02 Score=19.68 Aligned_cols=17 Identities=12% Similarity=0.226 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHhhChh
Q 026282 89 CGNVEDAIEKVNDLNPE 105 (241)
Q Consensus 89 ~G~~~~Ai~~i~~~~p~ 105 (241)
+|+++.|++|+-.+.+.
T Consensus 35 ~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 35 NQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp SCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 57899999999887543
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=21.08 E-value=2.7e+02 Score=20.92 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=26.1
Q ss_pred HHHhcCCHHHHHHHHHhhChhhhhcCCcchhhhHHHHHHHHHhcCCHHHHHHHHHHhc
Q 026282 85 KAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 142 (241)
Q Consensus 85 ~~I~~G~~~~Ai~~i~~~~p~l~~~~~~l~F~L~~q~fIEli~~~~~~~Al~~~r~~l 142 (241)
-....|++++|++++++... ....+. ....+...-.-+...|+.++|+.+.++-+
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ--DTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT--CTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHh--CccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566777777777665432 001111 11111111112345567777777766543
No 32
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=20.45 E-value=1.1e+02 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.7
Q ss_pred hcCCHHHHHHHHHhhC
Q 026282 88 QCGNVEDAIEKVNDLN 103 (241)
Q Consensus 88 ~~G~~~~Ai~~i~~~~ 103 (241)
..||++.|++|+-.+.
T Consensus 36 t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 36 TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HTSCHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHcC
Confidence 5689999999987653
No 33
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=20.17 E-value=2.2e+02 Score=26.05 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=64.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC-cCcHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcC---
Q 026282 35 DVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE-HIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTN--- 110 (241)
Q Consensus 35 ~~~~~~~~l~~LI~~yL~~~Gy~~ta~~l~~es~~~-~~d~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~--- 110 (241)
.+.++.+.+.--|.+-| ...+.|..++...|++ ..+. -.+++.+++..|++.+|...+......+++..
T Consensus 326 ~v~v~e~~ivpyi~~~l---~n~~lA~~lA~R~~LpGAd~L----~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti 398 (494)
T 1bpo_A 326 SVCVEEENIIPYITNVL---QNPDLALRMAVRNNLAGAEEL----FARKFNALFAQGNYSEAAKVAANAPKGILRTPDTI 398 (494)
T ss_dssp EEEECTTTHHHHHHHTT---CCHHHHHHHHHHTTCSSCHHH----HHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHH
T ss_pred EEEEccccchhhhhhcc---CCHHHHHHHHHhcCCccHHHH----HHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHH
Confidence 44555555555555544 6778999999999998 3333 35668899999999999888765432232211
Q ss_pred ------C--cchhhhHHHHHHHHHhcC--CHHHHHHHHHHhcc
Q 026282 111 ------P--QLFFHLQQQRLIELIRNG--KVEEALEFAQEELA 143 (241)
Q Consensus 111 ------~--~l~F~L~~q~fIEli~~~--~~~~Al~~~r~~l~ 143 (241)
+ .=.-.-..|.|--|+..| +..+.++.+|--+.
T Consensus 399 ~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r~vL~ 441 (494)
T 1bpo_A 399 RRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQ 441 (494)
T ss_dssp HHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHHhHHHHh
Confidence 0 000112455666677666 45678888775543
No 34
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=20.02 E-value=1.5e+02 Score=20.07 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCH--HHHHHHHHHHhCCC
Q 026282 44 NKLVMNFLVTEGY--VDAAEKFRMESGTE 70 (241)
Q Consensus 44 ~~LI~~yL~~~Gy--~~ta~~l~~es~~~ 70 (241)
..=|.+||...|+ .+-+..|.+. .+.
T Consensus 22 ~~dV~~WL~~~gl~~~~Y~~~F~~~-~Id 49 (91)
T 1v85_A 22 TEEVVLWLEQLGPWASLYRDRFLSE-RVN 49 (91)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHT-TCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh-CCC
Confidence 3457899999999 8888889765 444
Done!