BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026283
         (240 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4AA72|DNLJ_MYCHJ DNA ligase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
           NCTC 10110) GN=ligA PE=3 SV=2
          Length = 692

 Score = 37.0 bits (84), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 168 PLLIGTVAN----NFVIKGACPACKREFIGSKS---QIIRCAGCGNIVWQPEGDFFSRNG 220
           P +IG+V N    NF I   CP C  E + S+S   Q  +   C  I+ Q    F S+N 
Sbjct: 396 PQIIGSVHNYPKTNFSIVKNCPKCNSELVNSESGLDQFCQNQFCPEIILQKIVHFCSKNA 455


>sp|Q601T8|DNLJ_MYCH2 DNA ligase OS=Mycoplasma hyopneumoniae (strain 232) GN=ligA PE=3
           SV=1
          Length = 692

 Score = 37.0 bits (84), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 168 PLLIGTVAN----NFVIKGACPACKREFIGSKS---QIIRCAGCGNIVWQPEGDFFSRNG 220
           P +IG+V N    NF I   CP C  E + S+S   Q  +   C  I+ Q    F S+N 
Sbjct: 396 PQIIGSVHNYPKTNFSIVKNCPKCNSELVNSESGLDQFCQNQFCPEIILQKIVHFCSKNA 455


>sp|Q4A899|DNLJ_MYCH7 DNA ligase OS=Mycoplasma hyopneumoniae (strain 7448) GN=ligA PE=3
           SV=2
          Length = 692

 Score = 37.0 bits (84), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 168 PLLIGTVAN----NFVIKGACPACKREFIGSKS---QIIRCAGCGNIVWQPEGDFFSRNG 220
           P +IG+V N    NF I   CP C  E + S+S   Q  +   C  I+ Q    F S+N 
Sbjct: 396 PQIIGSVHNYPKTNFSIVKNCPKCNSELVNSESGLDQFCQNQFCPEIILQKIVHFCSKNA 455


>sp|P54028|RS27_METJA 30S ribosomal protein S27e OS=Methanocaldococcus jannaschii (strain
           ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
           GN=rps27e PE=3 SV=1
          Length = 62

 Score = 33.1 bits (74), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 184 CPACKREFI--GSKSQIIRCAGCGNIVWQPEGDFFSRNGGGKKSTK 227
           CP C  E I  GS + +++C  CG ++ +P G      G GK   K
Sbjct: 17  CPECNNEQIVFGSPATVVKCLTCGKVLVEPRG------GKGKVKAK 56


>sp|Q9FJD6|RBOHH_ARATH Putative respiratory burst oxidase homolog protein H OS=Arabidopsis
           thaliana GN=RBOHH PE=3 SV=1
          Length = 886

 Score = 32.7 bits (73), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 9   PLQLQPKTTLHIGRRRA--ATVRAFRRSDFDRFARRMTSGEAWRDAWRTANNGFEQLVFD 66
           P    PK T   G +R    T  A R     RF  R  +G   RDAWR+  N F Q   D
Sbjct: 84  PTNAVPKKT---GPQRVERTTSSAARGLQSLRFLDRTVTGRE-RDAWRSIENRFNQFSVD 139

Query: 67  AKKTAERIDRQYSVSRRLNSAART--AAVRARELDREFAI 104
            K   E+      +   +  AA    A  R R+++ E  I
Sbjct: 140 GKLPKEKFGVCIGMGDTMEFAAEVYEALGRRRQIETENGI 179


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,494,837
Number of Sequences: 539616
Number of extensions: 3276178
Number of successful extensions: 10922
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10920
Number of HSP's gapped (non-prelim): 10
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)