Query 026283
Match_columns 240
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 09:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f2b_A DNA-directed DNA polyme 95.9 0.0031 1.1E-07 65.2 2.5 54 184-239 505-566 (1041)
2 2kdx_A HYPA, hydrogenase/ureas 95.1 0.0074 2.5E-07 46.7 1.8 35 180-214 72-107 (119)
3 2lcq_A Putative toxin VAPC6; P 95.1 0.0081 2.8E-07 48.1 1.9 30 181-211 132-161 (165)
4 1twf_L ABC10-alpha, DNA-direct 94.4 0.011 3.9E-07 43.5 1.1 33 178-210 25-57 (70)
5 3a43_A HYPD, hydrogenase nicke 94.3 0.034 1.2E-06 44.6 3.8 33 182-214 71-124 (139)
6 1dl6_A Transcription factor II 93.0 0.052 1.8E-06 38.1 2.4 31 179-209 9-41 (58)
7 2hf1_A Tetraacyldisaccharide-1 92.9 0.063 2.2E-06 39.1 2.8 33 182-214 9-42 (68)
8 2pk7_A Uncharacterized protein 92.8 0.075 2.6E-06 38.8 3.1 34 181-214 8-42 (69)
9 2jr6_A UPF0434 protein NMA0874 92.8 0.07 2.4E-06 38.9 2.9 33 182-214 9-42 (68)
10 1pft_A TFIIB, PFTFIIBN; N-term 92.7 0.054 1.8E-06 36.1 2.1 29 182-210 6-36 (50)
11 2js4_A UPF0434 protein BB2007; 92.4 0.076 2.6E-06 38.9 2.7 33 182-214 9-42 (70)
12 1lko_A Rubrerythrin all-iron(I 91.6 0.048 1.6E-06 45.3 0.9 26 181-207 155-180 (191)
13 2jny_A Uncharacterized BCR; st 91.4 0.12 4.2E-06 37.6 2.8 33 182-214 11-44 (67)
14 1yuz_A Nigerythrin; rubrythrin 90.9 0.082 2.8E-06 44.6 1.7 26 180-207 170-195 (202)
15 3o9x_A Uncharacterized HTH-typ 90.8 0.07 2.4E-06 40.2 1.1 31 181-211 2-49 (133)
16 3h0g_L DNA-directed RNA polyme 90.8 0.13 4.6E-06 37.4 2.5 36 178-213 18-53 (63)
17 1qxf_A GR2, 30S ribosomal prot 90.6 0.13 4.5E-06 38.0 2.4 36 179-214 5-42 (66)
18 3m7n_A Putative uncharacterize 90.5 0.11 3.7E-06 42.8 2.0 29 179-208 138-166 (179)
19 2apo_B Ribosome biogenesis pro 90.0 0.17 5.9E-06 36.5 2.5 25 183-212 8-32 (60)
20 1gh9_A 8.3 kDa protein (gene M 89.4 0.15 5.2E-06 37.6 1.9 33 183-217 6-39 (71)
21 6rxn_A Rubredoxin; electron tr 89.1 0.13 4.5E-06 35.1 1.2 25 183-207 6-39 (46)
22 2kpi_A Uncharacterized protein 88.2 0.34 1.2E-05 33.9 3.0 32 182-214 11-44 (56)
23 3j20_Y 30S ribosomal protein S 88.2 0.3 1E-05 33.5 2.6 27 183-209 21-48 (50)
24 3pwf_A Rubrerythrin; non heme 88.0 0.18 6.1E-06 41.7 1.6 24 182-207 139-162 (170)
25 2akl_A PHNA-like protein PA012 88.0 0.2 6.9E-06 41.6 1.9 27 182-208 28-54 (138)
26 3ga8_A HTH-type transcriptiona 87.9 0.21 7.1E-06 35.9 1.7 30 181-210 2-48 (78)
27 2aus_D NOP10, ribosome biogene 87.3 0.4 1.4E-05 34.7 2.9 25 183-212 7-31 (60)
28 3j20_W 30S ribosomal protein S 87.1 0.34 1.2E-05 35.5 2.4 35 180-214 14-50 (63)
29 2k5r_A Uncharacterized protein 86.9 0.36 1.2E-05 37.6 2.7 32 182-213 9-68 (97)
30 1dvp_A HRS, hepatocyte growth 86.5 0.37 1.3E-05 40.3 2.7 28 181-209 161-188 (220)
31 1vfy_A Phosphatidylinositol-3- 86.0 0.47 1.6E-05 33.9 2.7 27 181-208 11-37 (73)
32 2yw8_A RUN and FYVE domain-con 85.9 0.47 1.6E-05 34.6 2.7 27 182-209 20-46 (82)
33 3na7_A HP0958; flagellar bioge 85.5 0.38 1.3E-05 41.2 2.3 35 179-213 196-237 (256)
34 2gmg_A Hypothetical protein PF 85.3 0.34 1.2E-05 38.4 1.8 29 179-207 65-93 (105)
35 2xzm_6 RPS27E; ribosome, trans 85.2 0.51 1.7E-05 36.1 2.6 35 180-214 31-67 (81)
36 3zyq_A Hepatocyte growth facto 85.0 0.48 1.6E-05 40.2 2.7 28 181-209 164-191 (226)
37 1x4u_A Zinc finger, FYVE domai 84.9 0.6 2.1E-05 34.1 2.9 27 182-209 15-41 (84)
38 1ryq_A DNA-directed RNA polyme 84.5 0.22 7.7E-06 36.9 0.4 23 180-207 10-32 (69)
39 3t7l_A Zinc finger FYVE domain 84.4 0.59 2E-05 34.7 2.7 26 182-208 21-46 (90)
40 2l6l_A DNAJ homolog subfamily 84.1 0.53 1.8E-05 37.2 2.4 31 181-212 112-147 (155)
41 3u5c_b RP61, YS20, 40S ribosom 83.9 0.48 1.6E-05 36.3 2.0 35 180-214 33-69 (82)
42 2vrw_B P95VAV, VAV1, proto-onc 83.7 0.54 1.8E-05 41.6 2.6 28 182-209 358-385 (406)
43 1joc_A EEA1, early endosomal a 83.7 0.64 2.2E-05 36.6 2.7 28 182-210 70-97 (125)
44 3k7a_M Transcription initiatio 83.1 0.53 1.8E-05 42.0 2.3 30 180-209 20-53 (345)
45 2jrp_A Putative cytoplasmic pr 83.0 0.97 3.3E-05 34.3 3.4 45 182-226 3-65 (81)
46 2kn9_A Rubredoxin; metalloprot 82.5 0.41 1.4E-05 36.3 1.1 31 181-215 27-73 (81)
47 2v3b_B Rubredoxin 2, rubredoxi 81.2 0.46 1.6E-05 33.3 0.9 26 182-207 4-45 (55)
48 3iz6_X 40S ribosomal protein S 80.6 0.58 2E-05 36.1 1.4 36 179-214 34-71 (86)
49 2fiy_A Protein FDHE homolog; F 80.4 0.61 2.1E-05 42.0 1.7 11 180-190 181-191 (309)
50 1z2q_A LM5-1; membrane protein 80.1 1.1 3.7E-05 32.8 2.7 27 182-209 22-48 (84)
51 1e8j_A Rubredoxin; iron-sulfur 80.0 0.8 2.7E-05 31.7 1.8 26 182-207 4-45 (52)
52 1vd4_A Transcription initiatio 79.8 0.73 2.5E-05 30.1 1.5 33 183-215 16-56 (62)
53 1wfk_A Zinc finger, FYVE domai 79.7 1.2 4.1E-05 33.2 2.8 26 182-208 10-35 (88)
54 1s24_A Rubredoxin 2; electron 79.3 0.49 1.7E-05 36.3 0.6 27 180-206 34-76 (87)
55 4esj_A Type-2 restriction enzy 79.2 1.1 3.7E-05 40.4 2.8 40 173-215 29-75 (257)
56 4bbr_M Transcription initiatio 79.2 0.9 3.1E-05 40.9 2.4 30 180-209 20-53 (345)
57 1yk4_A Rubredoxin, RD; electro 78.9 0.71 2.4E-05 32.0 1.2 26 182-207 3-44 (52)
58 1qyp_A RNA polymerase II; tran 78.7 0.86 2.9E-05 31.1 1.6 26 182-207 16-52 (57)
59 1y02_A CARP2, FYVE-ring finger 78.4 1.2 4.1E-05 35.4 2.6 27 181-208 19-45 (120)
60 3k1f_M Transcription initiatio 78.1 0.96 3.3E-05 39.4 2.1 31 179-209 19-53 (197)
61 2k4x_A 30S ribosomal protein S 77.8 1.2 4E-05 31.1 2.1 27 182-208 19-46 (55)
62 1h7b_A Anaerobic ribonucleotid 76.3 0.47 1.6E-05 46.3 -0.3 29 178-206 537-566 (605)
63 1dgs_A DNA ligase; AMP complex 76.1 0.42 1.5E-05 47.3 -0.7 37 180-218 402-441 (667)
64 2jne_A Hypothetical protein YF 75.6 1.7 5.7E-05 34.5 2.7 46 180-226 31-95 (101)
65 3sgi_A DNA ligase; HET: DNA AM 75.4 0.58 2E-05 46.1 0.0 40 180-219 414-458 (615)
66 2kwq_A Protein MCM10 homolog; 75.0 1.7 5.8E-05 33.6 2.5 32 183-215 50-82 (92)
67 1rmd_A RAG1; V(D)J recombinati 74.5 1.6 5.6E-05 32.1 2.3 31 181-211 58-103 (116)
68 1dx8_A Rubredoxin; electron tr 74.3 1.1 3.7E-05 32.8 1.2 27 181-207 7-49 (70)
69 4ayb_P DNA-directed RNA polyme 74.2 1.6 5.4E-05 30.6 2.0 29 183-211 5-36 (48)
70 1vk6_A NADH pyrophosphatase; 1 73.9 1.4 4.7E-05 38.2 2.0 27 181-207 107-134 (269)
71 1vq8_Z 50S ribosomal protein L 73.7 1.4 4.9E-05 33.1 1.8 33 181-215 27-60 (83)
72 2ecm_A Ring finger and CHY zin 72.6 2.2 7.4E-05 27.1 2.3 12 182-193 44-55 (55)
73 3mpx_A FYVE, rhogef and PH dom 72.4 0.76 2.6E-05 40.7 0.0 28 181-209 375-402 (434)
74 3ir9_A Peptide chain release f 72.0 1.3 4.4E-05 36.4 1.3 32 181-212 78-117 (166)
75 3u50_C Telomerase-associated p 71.3 1.2 4.2E-05 37.2 1.1 30 178-207 39-68 (172)
76 4rxn_A Rubredoxin; electron tr 70.9 1.6 5.4E-05 30.7 1.4 25 183-207 5-45 (54)
77 3h99_A Methionyl-tRNA syntheta 70.8 1.1 3.7E-05 41.9 0.7 27 177-207 151-177 (560)
78 2jrp_A Putative cytoplasmic pr 70.8 1.3 4.4E-05 33.6 1.0 35 181-215 31-68 (81)
79 2zjr_Z 50S ribosomal protein L 70.2 1.6 5.5E-05 31.1 1.3 18 184-205 33-50 (60)
80 3v2d_5 50S ribosomal protein L 69.6 1.6 5.3E-05 31.2 1.1 19 183-205 32-50 (60)
81 2owo_A DNA ligase; protein-DNA 68.7 0.61 2.1E-05 46.2 -1.6 40 180-219 404-447 (671)
82 3mhs_C SAGA-associated factor 68.6 6.6 0.00022 30.9 4.6 42 172-215 30-85 (99)
83 3hct_A TNF receptor-associated 68.0 4.3 0.00015 30.2 3.3 30 183-212 55-98 (118)
84 1l8d_A DNA double-strand break 66.4 1.3 4.4E-05 33.1 0.1 12 181-192 47-58 (112)
85 2epq_A POZ-, at HOOK-, and zin 66.2 2 6.7E-05 25.6 1.0 23 183-205 12-45 (45)
86 1yc5_A NAD-dependent deacetyla 65.9 1.6 5.6E-05 37.1 0.7 29 181-209 121-156 (246)
87 2jne_A Hypothetical protein YF 65.5 2.3 8E-05 33.7 1.5 31 179-209 59-92 (101)
88 3bvo_A CO-chaperone protein HS 64.2 3.5 0.00012 34.8 2.5 31 180-210 9-39 (207)
89 1p91_A Ribosomal RNA large sub 64.0 3 0.0001 33.6 1.9 23 183-206 4-26 (269)
90 1q1a_A HST2 protein; ternary c 63.1 1.9 6.6E-05 37.6 0.7 28 182-209 137-174 (289)
91 1dxg_A Desulforedoxin; non-hem 62.7 4.2 0.00014 25.8 2.1 18 195-212 3-20 (36)
92 1l1o_C Replication protein A 7 62.5 3.2 0.00011 33.9 1.9 33 177-209 39-73 (181)
93 4e2x_A TCAB9; kijanose, tetron 62.4 2.2 7.6E-05 37.2 0.9 13 197-209 52-64 (416)
94 3glr_A NAD-dependent deacetyla 62.2 2.1 7.2E-05 38.0 0.8 28 182-209 140-174 (285)
95 1m2k_A Silent information regu 61.9 2.5 8.5E-05 36.1 1.1 29 181-209 121-153 (249)
96 1ptq_A Protein kinase C delta 61.5 5.7 0.00019 25.5 2.6 27 182-208 12-38 (50)
97 2e72_A POGO transposable eleme 61.4 1.3 4.3E-05 31.3 -0.7 31 182-214 13-46 (49)
98 3pih_A Uvrabc system protein A 61.1 3 0.0001 42.4 1.8 24 182-205 250-280 (916)
99 3uk3_C Zinc finger protein 217 61.1 4.2 0.00014 24.9 1.8 27 183-209 6-43 (57)
100 1bbo_A Human enhancer-binding 60.3 6 0.00021 24.1 2.5 28 183-210 3-41 (57)
101 1nui_A DNA primase/helicase; z 60.0 3.5 0.00012 34.5 1.7 31 178-208 11-43 (255)
102 4glx_A DNA ligase; inhibitor, 59.9 1.1 3.6E-05 43.8 -1.7 40 181-220 405-448 (586)
103 3flo_B DNA polymerase alpha ca 59.9 2.8 9.7E-05 35.9 1.1 27 182-208 23-59 (206)
104 2k5c_A Uncharacterized protein 59.9 2.4 8E-05 33.1 0.5 14 182-195 52-65 (95)
105 3p8b_A DNA-directed RNA polyme 59.7 2.5 8.5E-05 32.2 0.6 22 181-207 23-44 (81)
106 2jr7_A DPH3 homolog; DESR1, CS 59.5 3.8 0.00013 31.4 1.7 30 182-212 24-59 (89)
107 3u6p_A Formamidopyrimidine-DNA 58.7 3.4 0.00012 36.2 1.4 32 174-205 234-272 (273)
108 2nn6_I 3'-5' exoribonuclease C 58.2 4.3 0.00015 34.2 2.0 28 179-207 167-194 (209)
109 4ap4_A E3 ubiquitin ligase RNF 57.6 6.7 0.00023 28.5 2.7 30 182-211 49-85 (133)
110 2ct7_A Ring finger protein 31; 56.8 5.9 0.0002 28.8 2.2 24 184-207 28-52 (86)
111 3lpe_B DNA-directed RNA polyme 56.8 3.3 0.00011 29.5 0.8 20 183-207 3-22 (59)
112 2adr_A ADR1; transcription reg 56.5 7.7 0.00026 24.0 2.5 27 183-209 4-41 (60)
113 1s5p_A NAD-dependent deacetyla 55.8 2.6 8.9E-05 35.7 0.2 28 182-209 114-145 (235)
114 3cng_A Nudix hydrolase; struct 55.6 5.5 0.00019 31.2 2.1 23 183-205 5-32 (189)
115 1ltl_A DNA replication initiat 55.0 4.1 0.00014 35.2 1.3 25 183-207 136-165 (279)
116 3uej_A NPKC-delta, protein kin 54.9 8.1 0.00028 26.5 2.6 27 182-208 21-47 (65)
117 1g25_A CDK-activating kinase a 53.8 4 0.00014 27.0 0.9 12 198-209 43-54 (65)
118 1tfi_A Transcriptional elongat 53.7 5.1 0.00018 27.3 1.4 16 183-198 11-26 (50)
119 1wge_A Hypothetical protein 26 53.7 6.1 0.00021 29.8 1.9 30 181-211 30-65 (83)
120 3po3_S Transcription elongatio 53.5 5.6 0.00019 33.1 1.8 24 104-127 64-88 (178)
121 3h0g_I DNA-directed RNA polyme 53.5 5.1 0.00017 30.9 1.5 14 183-196 74-87 (113)
122 1rqg_A Methionyl-tRNA syntheta 53.2 4.8 0.00016 39.4 1.6 25 179-208 138-163 (722)
123 1ma3_A SIR2-AF2, transcription 53.2 3.6 0.00012 35.2 0.6 29 181-209 123-159 (253)
124 1x61_A Thyroid receptor intera 52.8 12 0.00039 25.1 3.1 40 179-220 3-53 (72)
125 3cc2_Z 50S ribosomal protein L 52.8 5.9 0.0002 31.9 1.8 29 180-208 59-88 (116)
126 1yop_A KTI11P; zinc finger, me 52.1 5.7 0.00019 30.0 1.5 29 182-211 24-58 (83)
127 1ard_A Yeast transcription fac 51.6 5.2 0.00018 20.7 0.9 11 183-193 4-14 (29)
128 1bor_A Transcription factor PM 51.5 10 0.00034 24.8 2.5 21 194-214 33-53 (56)
129 2enz_A NPKC-theta, protein kin 50.9 9.6 0.00033 26.2 2.4 27 182-208 24-50 (65)
130 3ky9_A Proto-oncogene VAV; cal 50.4 8 0.00027 36.2 2.6 28 182-209 530-557 (587)
131 2yuu_A NPKC-delta, protein kin 50.1 10 0.00036 27.2 2.6 27 182-208 29-55 (83)
132 1q14_A HST2 protein; histone d 50.1 4.6 0.00016 36.9 0.9 29 181-209 144-182 (361)
133 3r8s_0 50S ribosomal protein L 50.0 6.1 0.00021 27.6 1.3 13 196-208 25-37 (56)
134 3jyw_9 60S ribosomal protein L 49.8 9.5 0.00032 28.3 2.4 34 180-215 25-59 (72)
135 2d9k_A FLN29 gene product; zin 49.8 6.5 0.00022 27.0 1.4 27 183-209 19-54 (75)
136 2dmd_A Zinc finger protein 64, 49.6 6.9 0.00024 26.3 1.5 27 183-209 38-75 (96)
137 2enn_A NPKC-theta, protein kin 49.4 10 0.00035 27.1 2.4 27 182-208 35-61 (77)
138 1wii_A Hypothetical UPF0222 pr 49.1 9.1 0.00031 28.9 2.2 32 182-213 24-62 (85)
139 1p7a_A BF3, BKLF, kruppel-like 48.8 6.3 0.00021 22.0 1.0 11 183-193 13-23 (37)
140 1k3x_A Endonuclease VIII; hydr 48.7 6.7 0.00023 34.0 1.6 23 183-205 236-261 (262)
141 1twf_I B12.6, DNA-directed RNA 48.2 8.4 0.00029 30.0 2.0 33 180-213 71-114 (122)
142 1pqv_S STP-alpha, transcriptio 48.2 6.3 0.00022 35.1 1.4 26 182-207 269-305 (309)
143 2m0e_A Zinc finger and BTB dom 47.6 7.1 0.00024 20.0 1.1 11 183-193 4-14 (29)
144 3j21_i 50S ribosomal protein L 47.4 8.6 0.00029 29.2 1.9 34 180-215 34-68 (83)
145 3izc_m 60S ribosomal protein R 47.3 9.7 0.00033 29.5 2.2 34 180-215 35-69 (92)
146 1ee8_A MUTM (FPG) protein; bet 46.7 7.8 0.00027 33.8 1.7 23 184-206 238-263 (266)
147 1znf_A 31ST zinc finger from X 46.6 7.3 0.00025 19.9 1.0 11 183-193 3-13 (27)
148 2dlq_A GLI-kruppel family memb 46.4 13 0.00045 25.8 2.6 9 183-191 37-45 (124)
149 3j21_e 50S ribosomal protein L 46.4 7.1 0.00024 28.5 1.2 24 181-206 17-40 (62)
150 2lce_A B-cell lymphoma 6 prote 46.2 8.7 0.0003 25.0 1.6 29 182-210 18-57 (74)
151 3vhs_A ATPase wrnip1; zinc fin 46.1 5.2 0.00018 25.2 0.4 10 182-191 7-16 (29)
152 1k82_A Formamidopyrimidine-DNA 45.8 7.5 0.00026 33.8 1.5 27 179-205 234-267 (268)
153 2eli_A Protein kinase C alpha 45.7 14 0.00049 26.8 2.8 27 182-208 29-55 (85)
154 2lvu_A Zinc finger and BTB dom 51.3 4.4 0.00015 20.9 0.0 11 183-193 4-14 (26)
155 1paa_A Yeast transcription fac 45.2 7.5 0.00026 20.3 0.9 11 183-193 4-14 (30)
156 2kmk_A Zinc finger protein GFI 45.2 8.9 0.0003 24.8 1.5 26 183-208 31-67 (82)
157 3iz5_m 60S ribosomal protein L 45.1 9.9 0.00034 29.4 1.9 34 180-215 35-69 (92)
158 2xzf_A Formamidopyrimidine-DNA 44.9 8 0.00027 33.6 1.5 28 179-206 236-270 (271)
159 3j21_g 50S ribosomal protein L 44.9 8.5 0.00029 26.8 1.4 34 176-212 9-42 (51)
160 1klr_A Zinc finger Y-chromosom 44.7 8.6 0.00029 19.8 1.1 11 183-193 4-14 (30)
161 2ea6_A Ring finger protein 4; 44.7 13 0.00044 24.2 2.2 12 181-192 56-67 (69)
162 3h0g_I DNA-directed RNA polyme 44.4 13 0.00045 28.5 2.6 31 183-213 6-41 (113)
163 1vq8_1 50S ribosomal protein L 44.3 6.8 0.00023 28.2 0.8 24 181-206 17-40 (57)
164 3irb_A Uncharacterized protein 44.1 5.9 0.0002 31.6 0.5 32 173-207 39-70 (145)
165 4g9i_A Hydrogenase maturation 44.1 4.5 0.00015 40.4 -0.2 32 183-214 158-194 (772)
166 2ecv_A Tripartite motif-contai 43.7 13 0.00044 25.0 2.2 13 198-210 59-71 (85)
167 2yt9_A Zinc finger-containing 43.3 12 0.00039 25.1 1.9 26 183-208 37-75 (95)
168 1x6e_A Zinc finger protein 24; 43.2 14 0.00047 23.9 2.2 27 183-209 16-53 (72)
169 2kvf_A Zinc finger and BTB dom 43.1 7.3 0.00025 20.2 0.7 11 183-193 5-15 (28)
170 2qkd_A Zinc finger protein ZPR 43.0 8.2 0.00028 36.3 1.4 28 180-207 219-258 (404)
171 2r6f_A Excinuclease ABC subuni 42.9 8.1 0.00028 40.0 1.5 25 181-205 267-298 (972)
172 1x4j_A Ring finger protein 38; 42.9 13 0.00044 25.1 2.1 11 182-192 61-71 (75)
173 1rik_A E6APC1 peptide; E6-bind 42.0 7.9 0.00027 20.1 0.7 11 183-193 4-14 (29)
174 1iym_A EL5; ring-H2 finger, ub 41.9 11 0.00036 23.8 1.4 8 183-190 45-52 (55)
175 1e4u_A Transcriptional repress 41.9 24 0.00083 25.1 3.5 19 197-215 49-67 (78)
176 1y8f_A UNC-13 homolog A, MUNC1 41.9 16 0.00053 25.2 2.4 27 182-208 25-51 (66)
177 2d9h_A Zinc finger protein 692 41.7 10 0.00034 24.8 1.3 28 183-210 9-50 (78)
178 3h7h_A Transcription elongatio 41.5 1.8 6.2E-05 34.8 -2.8 30 182-211 17-46 (120)
179 3dl0_A Adenylate kinase; phosp 41.3 12 0.00041 29.2 1.9 41 174-214 120-163 (216)
180 1rim_A E6APC2 peptide; E6-bind 41.1 10 0.00034 21.1 1.1 11 183-193 4-14 (33)
181 2d8s_A Cellular modulator of i 41.1 15 0.00052 26.4 2.3 12 182-193 59-70 (80)
182 1x68_A FHL5 protein; four-and- 41.0 14 0.0005 25.1 2.1 39 179-219 3-54 (76)
183 2ecw_A Tripartite motif-contai 41.0 12 0.00042 25.1 1.7 13 198-210 59-71 (85)
184 3axs_A Probable N(2),N(2)-dime 40.9 10 0.00036 34.6 1.7 29 182-210 245-275 (392)
185 2ect_A Ring finger protein 126 40.9 12 0.00041 25.3 1.6 14 199-212 53-66 (78)
186 2elr_A Zinc finger protein 406 40.8 9.5 0.00032 21.0 0.9 12 182-193 10-21 (36)
187 1u6p_A GAG polyprotein; MLV, A 40.7 19 0.00066 25.1 2.7 21 193-219 18-38 (56)
188 2zkr_2 60S ribosomal protein L 40.7 11 0.00036 29.7 1.5 25 181-207 16-40 (97)
189 1vyx_A ORF K3, K3RING; zinc-bi 39.8 17 0.00059 24.8 2.3 12 181-192 47-58 (60)
190 2ygr_A Uvrabc system protein A 39.8 11 0.00036 39.2 1.7 26 180-205 274-307 (993)
191 2ep4_A Ring finger protein 24; 39.6 17 0.00057 24.4 2.2 10 200-209 54-63 (74)
192 2gqj_A Zinc finger protein KIA 39.2 6.4 0.00022 27.5 0.0 29 182-210 25-66 (98)
193 3hcs_A TNF receptor-associated 39.2 23 0.0008 27.5 3.3 30 183-212 55-98 (170)
194 2egp_A Tripartite motif-contai 38.9 9.9 0.00034 25.6 1.0 13 198-210 53-65 (79)
195 2cot_A Zinc finger protein 435 38.9 14 0.00049 24.1 1.7 29 182-210 19-58 (77)
196 2yt5_A Metal-response element- 38.4 25 0.00086 23.8 3.0 28 181-208 6-33 (66)
197 2kvh_A Zinc finger and BTB dom 38.4 9.7 0.00033 19.7 0.7 11 183-193 5-15 (27)
198 2m0f_A Zinc finger and BTB dom 38.0 9.4 0.00032 19.5 0.6 11 183-193 4-14 (29)
199 4gop_C Putative uncharacterize 37.8 7.8 0.00027 35.2 0.4 34 176-209 303-338 (444)
200 1ffk_W Ribosomal protein L37AE 37.7 14 0.00048 27.3 1.7 33 181-215 27-60 (73)
201 2kfq_A FP1; protein, de novo p 37.6 9.5 0.00033 21.0 0.6 11 183-193 4-14 (32)
202 2egq_A FHL1 protein; LIM domai 37.6 17 0.00058 24.6 2.0 35 181-217 15-63 (77)
203 2lvt_A Zinc finger and BTB dom 43.8 6.9 0.00024 20.5 0.0 11 183-193 4-14 (29)
204 2con_A RUH-035 protein, NIN on 37.3 14 0.00048 27.7 1.6 23 183-207 17-39 (79)
205 2elx_A Zinc finger protein 406 37.3 10 0.00034 20.6 0.7 11 183-193 9-19 (35)
206 3qt1_I DNA-directed RNA polyme 37.3 17 0.00057 29.2 2.2 31 183-213 26-61 (133)
207 1chc_A Equine herpes virus-1 r 37.1 20 0.00067 23.5 2.2 11 199-209 41-51 (68)
208 4a17_Y RPL37A, 60S ribosomal p 36.9 11 0.00038 29.8 1.0 34 180-215 35-69 (103)
209 2m0d_A Zinc finger and BTB dom 36.7 10 0.00034 19.5 0.6 11 183-193 5-15 (30)
210 2ytb_A Zinc finger protein 32; 36.7 12 0.00042 21.3 1.0 12 182-193 12-23 (42)
211 2eod_A TNF receptor-associated 36.5 26 0.00089 22.3 2.7 27 183-210 12-49 (66)
212 2dmi_A Teashirt homolog 3; zin 36.5 19 0.00065 25.0 2.2 28 183-210 52-92 (115)
213 3u31_A SIR2A, transcriptional 36.3 10 0.00035 33.6 0.8 27 182-209 155-192 (290)
214 2elp_A Zinc finger protein 406 36.1 11 0.00037 21.0 0.7 11 183-193 11-21 (37)
215 3ng2_A RNF4, snurf, ring finge 35.9 19 0.00065 23.6 2.0 11 182-192 52-62 (71)
216 3q87_A Putative uncharacterize 35.7 17 0.00057 29.3 2.0 17 197-213 98-114 (125)
217 2ckl_B Ubiquitin ligase protei 35.5 14 0.00049 28.7 1.5 28 182-209 55-101 (165)
218 2kvg_A Zinc finger and BTB dom 35.5 7.7 0.00026 20.4 -0.0 11 183-193 5-15 (27)
219 1x4l_A Skeletal muscle LIM-pro 35.4 22 0.00076 23.7 2.3 37 181-219 5-54 (72)
220 3vth_A Hydrogenase maturation 35.3 8 0.00027 38.8 0.0 31 183-213 163-198 (761)
221 2xeu_A Ring finger protein 4; 35.0 22 0.00074 22.7 2.1 12 181-192 44-55 (64)
222 2lvr_A Zinc finger and BTB dom 40.9 8.2 0.00028 20.0 0.0 11 183-193 5-15 (30)
223 3fac_A Putative uncharacterize 34.5 38 0.0013 25.2 3.7 23 189-211 58-80 (118)
224 4fo9_A E3 SUMO-protein ligase 34.3 18 0.00062 33.6 2.2 36 180-215 253-296 (360)
225 2en7_A Zinc finger protein 268 34.3 14 0.00048 21.3 1.0 12 182-193 13-24 (44)
226 1llm_C Chimera of ZIF23-GCN4; 34.2 17 0.0006 24.3 1.6 26 183-208 5-41 (88)
227 2elt_A Zinc finger protein 406 34.1 12 0.00042 20.5 0.7 11 183-193 11-21 (36)
228 2l0b_A E3 ubiquitin-protein li 34.0 20 0.00069 25.4 2.0 10 182-191 78-87 (91)
229 3l11_A E3 ubiquitin-protein li 33.9 20 0.00069 26.1 2.0 13 198-210 50-62 (115)
230 1srk_A Zinc finger protein ZFP 33.7 12 0.00042 20.4 0.7 11 183-193 9-19 (35)
231 2dkt_A Ring finger and CHY zin 33.6 20 0.00068 29.5 2.1 9 183-191 60-68 (143)
232 2elq_A Zinc finger protein 406 33.6 13 0.00043 20.6 0.7 11 183-193 11-21 (36)
233 2ee8_A Protein ODD-skipped-rel 33.4 16 0.00054 25.0 1.3 10 183-192 47-56 (106)
234 3fb4_A Adenylate kinase; psych 33.2 16 0.00054 28.4 1.4 41 173-213 119-162 (216)
235 2elv_A Zinc finger protein 406 33.2 13 0.00044 20.6 0.7 11 183-193 11-21 (36)
236 2wbt_A B-129; zinc finger; 2.7 33.0 14 0.00046 26.5 0.9 28 182-209 75-111 (129)
237 2els_A Zinc finger protein 406 32.9 12 0.00042 20.6 0.6 11 183-193 11-21 (36)
238 2avu_E Flagellar transcription 32.8 21 0.0007 30.6 2.2 39 167-205 120-161 (192)
239 2kiz_A E3 ubiquitin-protein li 32.7 30 0.001 22.7 2.6 12 199-210 52-63 (69)
240 2jvx_A NF-kappa-B essential mo 32.6 5.7 0.00019 24.7 -1.0 16 183-198 5-20 (28)
241 2ctd_A Zinc finger protein 512 32.5 17 0.00057 25.9 1.4 27 183-209 36-73 (96)
242 2ct0_A Non-SMC element 1 homol 32.5 27 0.00091 25.2 2.4 32 183-214 30-68 (74)
243 2i13_A AART; DNA binding, zinc 32.3 17 0.00057 27.7 1.4 11 183-193 23-33 (190)
244 2eos_A B-cell lymphoma 6 prote 32.3 17 0.00057 20.9 1.1 12 182-193 12-23 (42)
245 2djb_A Polycomb group ring fin 32.2 26 0.00088 23.5 2.2 13 199-211 51-63 (72)
246 2db6_A SH3 and cysteine rich d 32.2 14 0.00048 26.1 0.9 27 182-208 29-55 (74)
247 2f93_B Sensory rhodopsin II tr 32.1 39 0.0013 27.2 3.5 24 158-181 64-87 (122)
248 4ioe_A Secreted protein ESXB; 32.0 89 0.003 21.4 5.1 43 46-102 51-93 (93)
249 2yte_A Zinc finger protein 473 31.9 16 0.00054 20.8 0.9 12 182-193 11-22 (42)
250 2f95_B Sensory rhodopsin II tr 31.7 87 0.003 22.7 5.2 10 170-179 74-83 (163)
251 2yti_A Zinc finger protein 347 31.7 17 0.00058 21.3 1.1 12 182-193 13-24 (46)
252 2enf_A Zinc finger protein 347 31.6 17 0.00057 21.3 1.0 12 182-193 13-24 (46)
253 2elm_A Zinc finger protein 406 31.2 12 0.00041 21.2 0.3 11 183-193 11-21 (37)
254 2eon_A ZFP-95, zinc finger pro 31.2 17 0.00058 21.5 1.0 11 183-193 14-24 (46)
255 2eq2_A Zinc finger protein 347 31.1 18 0.00061 21.2 1.1 12 182-193 13-24 (46)
256 1j8f_A SIRT2, sirtuin 2, isofo 30.9 13 0.00044 33.2 0.6 28 182-209 160-196 (323)
257 3qt1_I DNA-directed RNA polyme 30.7 16 0.00055 29.2 1.1 16 198-213 24-39 (133)
258 2elo_A Zinc finger protein 406 30.7 11 0.00038 20.9 0.1 11 183-193 11-21 (37)
259 1vzi_A Desulfoferrodoxin; ferr 30.4 26 0.0009 27.5 2.3 14 197-210 6-19 (126)
260 2csh_A Zinc finger protein 297 30.3 27 0.00092 24.1 2.1 29 182-210 38-77 (110)
261 2emg_A Zinc finger protein 484 30.1 17 0.0006 21.2 0.9 12 182-193 13-24 (46)
262 2yth_A Zinc finger protein 224 30.1 19 0.00065 21.1 1.1 12 182-193 13-24 (46)
263 3dpl_R Ring-box protein 1; ubi 30.0 26 0.00089 26.4 2.1 17 172-191 83-99 (106)
264 1nyp_A Pinch protein; LIM doma 30.0 16 0.00055 24.0 0.8 38 179-218 3-49 (66)
265 2eoh_A Zinc finger protein 28 29.9 19 0.00065 21.1 1.1 12 182-193 13-24 (46)
266 2em6_A Zinc finger protein 224 29.9 18 0.00063 21.2 1.0 12 182-193 13-24 (46)
267 4dgl_A Casein kinase II subuni 29.7 25 0.00085 30.7 2.2 34 178-211 103-147 (215)
268 2gnr_A Conserved hypothetical 29.7 15 0.00051 29.5 0.8 31 174-207 40-70 (145)
269 2cur_A Skeletal muscle LIM-pro 29.6 34 0.0012 22.6 2.4 36 180-217 4-48 (69)
270 3riy_A NAD-dependent deacetyla 29.2 14 0.00047 32.1 0.5 11 182-192 135-145 (273)
271 1g47_A Pinch protein; LIM doma 29.2 29 0.00098 23.3 2.0 38 178-217 8-56 (77)
272 2kr4_A Ubiquitin conjugation f 29.1 30 0.001 24.5 2.2 11 182-192 49-59 (85)
273 1p58_D Envelope protein M; fla 29.0 48 0.0016 24.5 3.3 24 134-157 40-63 (75)
274 1qf8_A Casein kinase II; casei 28.9 29 0.00098 29.4 2.4 33 179-211 104-147 (182)
275 2gag_D Heterotetrameric sarcos 28.9 12 0.00042 29.2 0.1 31 198-232 3-33 (99)
276 3nw0_A Non-structural maintena 28.7 43 0.0015 28.6 3.5 30 46-75 42-71 (238)
277 2eq1_A Zinc finger protein 347 28.3 20 0.00069 20.9 1.0 12 182-193 13-24 (46)
278 2ehe_A Four and A half LIM dom 28.3 35 0.0012 23.3 2.4 34 182-217 16-60 (82)
279 2ep1_A Zinc finger protein 484 28.1 21 0.00073 20.7 1.1 12 182-193 13-24 (46)
280 3f9v_A Minichromosome maintena 28.1 57 0.0019 30.9 4.5 25 182-206 136-170 (595)
281 3gmt_A Adenylate kinase; ssgci 28.1 18 0.00061 30.9 1.0 42 173-214 123-167 (230)
282 1pvm_A Conserved hypothetical 28.1 14 0.0005 28.2 0.4 29 179-207 147-178 (184)
283 1wjp_A Zinc finger protein 295 28.0 17 0.00059 25.1 0.7 27 182-208 43-79 (107)
284 3ttc_A HYPF, transcriptional r 28.0 11 0.00036 37.4 -0.5 30 183-212 69-104 (657)
285 2enh_A Zinc finger protein 28 28.0 20 0.00068 21.0 0.9 12 182-193 13-24 (46)
286 1njq_A Superman protein; zinc- 28.0 17 0.00058 20.6 0.6 11 183-193 8-18 (39)
287 2kv1_A Methionine-R-sulfoxide 27.9 54 0.0018 26.5 3.7 44 190-233 6-55 (124)
288 1v87_A Deltex protein 2; ring- 27.8 37 0.0013 24.4 2.6 16 198-213 82-97 (114)
289 2ecl_A Ring-box protein 2; RNF 27.7 24 0.00082 24.6 1.5 17 177-193 11-27 (81)
290 3pk1_A Induced myeloid leukemi 27.6 2.2E+02 0.0074 23.9 7.5 66 84-149 69-139 (189)
291 2eov_A Zinc finger protein 484 27.6 21 0.00073 20.7 1.0 12 182-193 13-24 (46)
292 1bw3_A Barwin, basic barley SE 27.6 12 0.0004 30.2 -0.3 28 200-238 85-119 (125)
293 2yu5_A Zinc finger protein 473 27.5 16 0.00055 21.2 0.4 11 183-193 14-24 (44)
294 2en9_A Zinc finger protein 28 27.5 21 0.00071 21.0 0.9 12 182-193 13-24 (46)
295 3pfq_A PKC-B, PKC-beta, protei 27.3 31 0.0011 32.7 2.6 31 180-210 112-142 (674)
296 1zbd_B Rabphilin-3A; G protein 27.3 43 0.0015 26.6 3.0 36 180-215 54-89 (134)
297 2cup_A Skeletal muscle LIM-pro 27.3 28 0.00094 24.6 1.7 39 180-220 4-53 (101)
298 2emz_A ZFP-95, zinc finger pro 27.1 23 0.00078 20.8 1.1 12 182-193 13-24 (46)
299 2dj7_A Actin-binding LIM prote 27.0 35 0.0012 23.8 2.2 37 181-220 15-61 (80)
300 2eou_A Zinc finger protein 473 26.9 22 0.00076 20.6 1.0 12 182-193 13-24 (44)
301 3sr0_A Adenylate kinase; phosp 26.6 20 0.00069 29.3 1.0 38 173-214 116-153 (206)
302 2ysl_A Tripartite motif-contai 26.6 26 0.00089 23.1 1.4 16 196-211 55-70 (73)
303 2f9y_B Acetyl-coenzyme A carbo 26.6 18 0.00063 32.0 0.8 29 181-209 24-54 (304)
304 1lv3_A Hypothetical protein YA 26.6 17 0.00058 26.7 0.5 13 180-192 8-20 (68)
305 2em0_A Zinc finger protein 224 26.4 24 0.00082 20.6 1.1 12 182-193 13-24 (46)
306 2eom_A ZFP-95, zinc finger pro 26.4 24 0.00082 20.8 1.1 12 182-193 13-24 (46)
307 2epc_A Zinc finger protein 32; 26.0 20 0.00068 20.4 0.7 11 183-193 13-23 (42)
308 2ely_A Zinc finger protein 224 25.8 25 0.00086 20.6 1.1 12 182-193 13-24 (46)
309 2el5_A Zinc finger protein 268 25.6 18 0.00062 20.6 0.4 11 183-193 12-22 (42)
310 1t1h_A Gspef-atpub14, armadill 25.6 37 0.0013 22.8 2.0 10 199-208 44-53 (78)
311 2ytr_A Zinc finger protein 347 25.5 25 0.00084 20.5 1.0 12 182-193 13-24 (46)
312 2epx_A Zinc finger protein 28 25.4 26 0.00089 20.4 1.1 12 182-193 13-24 (47)
313 2eoq_A Zinc finger protein 224 25.3 26 0.00088 20.4 1.1 12 182-193 13-24 (46)
314 2f9i_B Acetyl-coenzyme A carbo 25.3 14 0.0005 32.5 -0.1 26 182-207 31-58 (285)
315 2epv_A Zinc finger protein 268 25.3 21 0.00071 20.8 0.7 11 183-193 14-24 (44)
316 2emk_A Zinc finger protein 28 25.3 25 0.00086 20.6 1.0 12 182-193 13-24 (46)
317 2iyb_E Testin, TESS, TES; LIM 25.1 32 0.0011 22.7 1.7 36 182-219 3-51 (65)
318 3e20_C Eukaryotic peptide chai 25.1 16 0.00056 34.0 0.2 28 183-211 339-376 (441)
319 1wgm_A Ubiquitin conjugation f 25.0 27 0.00093 25.7 1.4 11 182-192 58-68 (98)
320 2ytn_A Zinc finger protein 347 24.9 25 0.00084 20.5 0.9 12 182-193 13-24 (46)
321 2xzm_9 RPS31E; ribosome, trans 24.9 24 0.00082 29.9 1.2 27 183-209 115-142 (189)
322 2ct2_A Tripartite motif protei 24.9 37 0.0013 23.0 2.0 12 199-210 57-68 (88)
323 2k2d_A Ring finger and CHY zin 24.8 23 0.00079 26.1 0.9 31 177-207 33-64 (79)
324 2yur_A Retinoblastoma-binding 24.8 47 0.0016 22.4 2.5 16 199-214 53-68 (74)
325 1yui_A GAGA-factor; complex (D 24.7 21 0.0007 22.0 0.6 11 183-193 26-36 (54)
326 3lqh_A Histone-lysine N-methyl 24.5 39 0.0013 28.2 2.4 24 183-206 4-29 (183)
327 2ytp_A Zinc finger protein 484 24.5 19 0.00066 21.1 0.4 11 183-193 14-24 (46)
328 2yto_A Zinc finger protein 484 24.4 19 0.00067 21.1 0.4 11 183-193 14-24 (46)
329 2d8t_A Dactylidin, ring finger 24.4 24 0.00081 23.6 0.9 12 199-210 50-61 (71)
330 2epz_A Zinc finger protein 28 24.3 27 0.00091 20.4 1.0 12 182-193 13-24 (46)
331 2eow_A Zinc finger protein 347 24.2 22 0.00075 20.7 0.6 11 183-193 14-24 (46)
332 2vl6_A SSO MCM N-TER, minichro 24.0 26 0.0009 29.7 1.3 24 183-206 143-176 (268)
333 2yrm_A B-cell lymphoma 6 prote 24.0 29 0.00098 20.2 1.1 12 182-193 11-22 (43)
334 2en2_A B-cell lymphoma 6 prote 23.9 22 0.00076 20.2 0.6 11 183-193 13-23 (42)
335 2ytm_A Zinc finger protein 28 23.8 26 0.0009 20.6 0.9 12 182-193 13-24 (46)
336 2em3_A Zinc finger protein 28 23.8 23 0.00079 20.7 0.7 11 183-193 14-24 (46)
337 2emb_A Zinc finger protein 473 23.7 22 0.00076 20.5 0.6 11 183-193 14-24 (44)
338 2emi_A Zinc finger protein 484 23.7 23 0.0008 20.7 0.7 11 183-193 14-24 (46)
339 2j9u_B VPS36, vacuolar protein 23.7 39 0.0013 25.5 2.0 28 180-207 16-49 (76)
340 2ept_A Zinc finger protein 32; 23.7 24 0.00081 20.1 0.7 11 183-193 12-22 (41)
341 2eq4_A Zinc finger protein 224 23.7 26 0.0009 20.3 0.9 12 182-193 13-24 (46)
342 2eop_A Zinc finger protein 268 23.6 27 0.00092 20.3 0.9 12 182-193 13-24 (46)
343 2emj_A Zinc finger protein 28 23.6 24 0.00081 20.7 0.7 11 183-193 14-24 (46)
344 2ytq_A Zinc finger protein 268 23.5 28 0.00097 20.3 1.0 12 182-193 13-24 (46)
345 2eml_A Zinc finger protein 28 23.5 21 0.00071 20.9 0.4 11 183-193 14-24 (46)
346 2d8z_A Four and A half LIM dom 23.4 56 0.0019 21.5 2.6 36 180-217 4-48 (70)
347 2eq3_A Zinc finger protein 347 23.4 16 0.00054 21.3 -0.2 12 182-193 13-24 (46)
348 2elz_A Zinc finger protein 224 23.3 29 0.00098 20.3 1.0 12 182-193 13-24 (46)
349 2gai_A DNA topoisomerase I; zi 23.3 23 0.00078 34.5 0.8 30 183-213 558-588 (633)
350 2dar_A PDZ and LIM domain prot 23.3 56 0.0019 22.8 2.7 37 179-217 23-68 (90)
351 2yts_A Zinc finger protein 484 23.2 24 0.00083 20.5 0.7 11 183-193 14-24 (46)
352 2eoy_A Zinc finger protein 473 23.1 24 0.00083 20.7 0.7 11 183-193 14-24 (46)
353 2epw_A Zinc finger protein 268 23.1 21 0.00073 20.7 0.4 11 183-193 14-24 (46)
354 2csy_A Zinc finger protein 183 23.1 47 0.0016 22.6 2.2 9 200-208 51-59 (81)
355 2l8e_A Polyhomeotic-like prote 22.9 43 0.0015 22.9 1.9 16 197-212 17-32 (49)
356 2yrj_A Zinc finger protein 473 22.9 25 0.00085 20.4 0.7 11 183-193 14-24 (46)
357 2eof_A Zinc finger protein 268 22.8 24 0.00082 20.2 0.6 11 183-193 14-24 (44)
358 4b6d_A RAC GTPase-activating p 22.8 36 0.0012 23.7 1.6 30 179-209 17-46 (61)
359 2ytt_A Zinc finger protein 473 22.6 31 0.0011 20.1 1.1 12 182-193 13-24 (46)
360 3j27_B Matrix protein, small e 22.5 45 0.0015 24.6 2.2 24 134-157 40-63 (75)
361 2riq_A Poly [ADP-ribose] polym 22.5 32 0.0011 28.6 1.5 22 181-203 78-99 (160)
362 2en3_A ZFP-95, zinc finger pro 22.3 26 0.00088 20.4 0.7 11 183-193 14-24 (46)
363 2l4z_A DNA endonuclease RBBP8, 22.1 57 0.0019 24.8 2.7 41 180-220 60-110 (123)
364 2ytj_A Zinc finger protein 484 22.0 23 0.00079 20.7 0.4 11 183-193 14-24 (46)
365 1x0t_A Ribonuclease P protein 22.0 61 0.0021 25.1 2.9 34 181-214 65-110 (120)
366 1z6u_A NP95-like ring finger p 22.0 32 0.0011 27.0 1.3 31 181-211 78-126 (150)
367 2em7_A Zinc finger protein 224 21.8 24 0.00081 20.6 0.4 11 183-193 14-24 (46)
368 2em4_A Zinc finger protein 28 21.7 27 0.00093 20.4 0.7 11 183-193 14-24 (46)
369 2bay_A PRE-mRNA splicing facto 21.6 40 0.0014 22.9 1.6 11 182-192 39-49 (61)
370 1i7d_A DNA topoisomerase III; 21.5 21 0.00072 35.0 0.2 18 197-214 615-632 (659)
371 2cu8_A Cysteine-rich protein 2 21.5 49 0.0017 22.3 2.0 36 180-217 8-53 (76)
372 2ep3_A Zinc finger protein 484 21.5 27 0.00094 20.3 0.7 11 183-193 14-24 (46)
373 2ctt_A DNAJ homolog subfamily 21.4 38 0.0013 24.9 1.6 13 193-205 62-74 (104)
374 2yu8_A Zinc finger protein 347 21.4 24 0.00084 20.6 0.4 11 183-193 14-24 (46)
375 1z60_A TFIIH basal transcripti 21.3 36 0.0012 24.0 1.3 24 183-208 17-40 (59)
376 2eoj_A Zinc finger protein 268 21.2 21 0.00072 20.6 0.1 12 182-193 13-24 (44)
377 3cxl_A N-chimerin; SH2, RHO-GA 21.2 43 0.0015 30.6 2.2 30 181-210 220-249 (463)
378 2ytf_A Zinc finger protein 268 21.2 28 0.00096 20.2 0.7 11 183-193 14-24 (46)
379 2eor_A Zinc finger protein 224 21.0 27 0.00093 20.2 0.6 11 183-193 14-24 (46)
380 2zet_C Melanophilin; complex, 20.9 62 0.0021 26.3 2.9 37 179-215 66-102 (153)
381 2kre_A Ubiquitin conjugation f 20.8 37 0.0013 25.1 1.4 11 182-192 64-74 (100)
382 2el4_A Zinc finger protein 268 20.7 26 0.00088 20.4 0.4 11 183-193 14-24 (46)
383 1skh_A Major prion protein 2; 20.7 51 0.0017 21.1 1.8 13 132-144 4-16 (30)
384 2emp_A Zinc finger protein 347 20.7 26 0.00088 20.5 0.4 11 183-193 14-24 (46)
385 1wyh_A SLIM 2, skeletal muscle 20.7 57 0.002 21.5 2.2 36 180-217 4-50 (72)
386 2emy_A Zinc finger protein 268 20.5 26 0.00089 20.4 0.4 11 183-193 14-24 (46)
387 1ubd_C Protein (YY1 zinc finge 20.5 52 0.0018 22.9 2.1 10 183-192 36-45 (124)
388 2em5_A ZFP-95, zinc finger pro 20.3 30 0.001 20.2 0.7 11 183-193 14-24 (46)
389 2i5o_A DNA polymerase ETA; zin 20.3 45 0.0015 21.9 1.5 14 198-211 9-22 (39)
390 2eq0_A Zinc finger protein 347 20.1 26 0.00088 20.4 0.3 11 183-193 14-24 (46)
391 2em2_A Zinc finger protein 28 20.1 31 0.001 20.2 0.7 11 183-193 14-24 (46)
No 1
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=95.85 E-value=0.0031 Score=65.19 Aligned_cols=54 Identities=28% Similarity=0.428 Sum_probs=36.1
Q ss_pred CCCCCc-cc-------cccccceeecCCCCceeeeeCCCcccCCCCCCCCCCCCCCeeeeeccc
Q 026283 184 CPACKR-EF-------IGSKSQIIRCAGCGNIVWQPEGDFFSRNGGGKKSTKSDDDIIDVDFEE 239 (240)
Q Consensus 184 CPvC~~-eF-------tG~nnt~~~CpnCGe~l~v~~g~F~s~~g~~~~~r~t~pgtIDVe~e~ 239 (240)
||.|+| || .|+.=-.--||.||+.+.-..-+- .=+-+=+..|.++|| |||+|+.
T Consensus 505 c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~~dg~~L-lFERFLnpeR~~~PD-IDlDF~~ 566 (1041)
T 3f2b_A 505 CPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDI-PFETFLGFKGDKVPD-IDLNFSG 566 (1041)
T ss_dssp CTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEEECCCC-CTHHHHTTTSCSCCC-EEEEEET
T ss_pred CccccccccccccccccccCCccccCccccccccccCCCc-ChhhccCCCCCCCCC-cceECCC
Confidence 999998 34 577777889999999976544220 000001567888887 6888763
No 2
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=95.13 E-value=0.0074 Score=46.70 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=25.4
Q ss_pred hcCCCCCCCccccccccceeecCCCCce-eeeeCCC
Q 026283 180 IKGACPACKREFIGSKSQIIRCAGCGNI-VWQPEGD 214 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt~~~CpnCGe~-l~v~~g~ 214 (240)
++..|+.||++|.+-......||.||-+ +.+..|+
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGN 107 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSCCCEEEESS
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCCCcEEecCC
Confidence 3567999999999855443389999987 4444443
No 3
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=95.06 E-value=0.0081 Score=48.11 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=23.8
Q ss_pred cCCCCCCCccccccccceeecCCCCceeeee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIVWQP 211 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l~v~ 211 (240)
+-.|+.|+++|... .....||.||.++...
T Consensus 132 ~y~C~~Cg~~~~~~-~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL-PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp CEEESSSCCEESSC-CGGGBCTTTCCBEEEC
T ss_pred EEECCCCCCcccCC-CCCCcCCCCCCcceeC
Confidence 46799999999875 4446999999997543
No 4
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=94.39 E-value=0.011 Score=43.46 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=27.7
Q ss_pred hhhcCCCCCCCccccccccceeecCCCCceeee
Q 026283 178 FVIKGACPACKREFIGSKSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 178 nLIeg~CPvC~~eFtG~nnt~~~CpnCGe~l~v 210 (240)
+-++-.|+.|+.+|.=.....++||.||.-+..
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 567889999999988888888999999994433
No 5
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=94.32 E-value=0.034 Score=44.63 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=25.4
Q ss_pred CCCCCCCccccccc-----------cc---------eeecCCCCce-eeeeCCC
Q 026283 182 GACPACKREFIGSK-----------SQ---------IIRCAGCGNI-VWQPEGD 214 (240)
Q Consensus 182 g~CPvC~~eFtG~n-----------nt---------~~~CpnCGe~-l~v~~g~ 214 (240)
..|+.|||+|.+-. .- ...||.||-+ +.+..|+
T Consensus 71 ~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~ 124 (139)
T 3a43_A 71 FKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGR 124 (139)
T ss_dssp EEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESS
T ss_pred EECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCC
Confidence 36999999999844 21 6789999987 6676664
No 6
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=92.98 E-value=0.052 Score=38.09 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=23.5
Q ss_pred hhcCCCCCCCc-ccc-ccccceeecCCCCceee
Q 026283 179 VIKGACPACKR-EFI-GSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 179 LIeg~CPvC~~-eFt-G~nnt~~~CpnCGe~l~ 209 (240)
+....||.|+. +++ -.......|.+||-+|.
T Consensus 9 l~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CSCCSBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred cccccCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 44458999987 432 45678999999999885
No 7
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=92.91 E-value=0.063 Score=39.12 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=26.7
Q ss_pred CCCCCCCccccccc-cceeecCCCCceeeeeCCC
Q 026283 182 GACPACKREFIGSK-SQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 182 g~CPvC~~eFtG~n-nt~~~CpnCGe~l~v~~g~ 214 (240)
-.||+|+.++.=-. .+...|++||..--|.+|-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGI 42 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEETTE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCe
Confidence 47999998876332 5778999999999999884
No 8
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=92.81 E-value=0.075 Score=38.82 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=27.1
Q ss_pred cCCCCCCCcccccc-ccceeecCCCCceeeeeCCC
Q 026283 181 KGACPACKREFIGS-KSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 181 eg~CPvC~~eFtG~-nnt~~~CpnCGe~l~v~~g~ 214 (240)
--.||+|+..+.=- ..+...|++||-.--|.+|-
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGI 42 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAYPIRDGI 42 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEEEEETTE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEecCcCCe
Confidence 34899999887622 24778999999999999884
No 9
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=92.78 E-value=0.07 Score=38.88 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=26.8
Q ss_pred CCCCCCCccccccc-cceeecCCCCceeeeeCCC
Q 026283 182 GACPACKREFIGSK-SQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 182 g~CPvC~~eFtG~n-nt~~~CpnCGe~l~v~~g~ 214 (240)
-.||+|+.++.=-. .+...|++||..--|.+|-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGI 42 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEETTE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCCCe
Confidence 48999998876332 4778999999999999884
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=92.71 E-value=0.054 Score=36.09 Aligned_cols=29 Identities=38% Similarity=0.867 Sum_probs=21.9
Q ss_pred CCCCCCCc-ccc-ccccceeecCCCCceeee
Q 026283 182 GACPACKR-EFI-GSKSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 182 g~CPvC~~-eFt-G~nnt~~~CpnCGe~l~v 210 (240)
-.||.|+. +++ -...+...|++||-++..
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 47999988 542 345678999999987653
No 11
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=92.41 E-value=0.076 Score=38.89 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCCCCCCccccccc-cceeecCCCCceeeeeCCC
Q 026283 182 GACPACKREFIGSK-SQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 182 g~CPvC~~eFtG~n-nt~~~CpnCGe~l~v~~g~ 214 (240)
-.||+|+.++.=-. .+...|++||..--|.+|-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEETTE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCCCCe
Confidence 47999999876332 4678999999999999884
No 12
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=91.59 E-value=0.048 Score=45.34 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=20.1
Q ss_pred cCCCCCCCccccccccceeecCCCCce
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
.-.|++|||-+.|-.--. .||-||-+
T Consensus 155 ~~~C~~CG~~~~g~~~p~-~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPE-LCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECCS-BCTTTCCB
T ss_pred eEEECCCCCEeeCCCCCC-CCCCCcCC
Confidence 456999999999853333 89999964
No 13
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=91.41 E-value=0.12 Score=37.61 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=26.8
Q ss_pred CCCCCCCcccccc-ccceeecCCCCceeeeeCCC
Q 026283 182 GACPACKREFIGS-KSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 182 g~CPvC~~eFtG~-nnt~~~CpnCGe~l~v~~g~ 214 (240)
-.||+|+.++.=- ..+...|++||-.--|.+|-
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~dGI 44 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRIDDGI 44 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEETTE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccCCCCE
Confidence 4899999987633 25688999999999999884
No 14
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=90.87 E-value=0.082 Score=44.64 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=21.1
Q ss_pred hcCCCCCCCccccccccceeecCCCCce
Q 026283 180 IKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
..-.|++|||-..| .-.-.||-||-+
T Consensus 170 ~~~~C~~CG~i~~g--~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKG--EDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEES--SCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcC--cCCCCCCCCCCC
Confidence 34579999999999 455799999964
No 15
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=90.79 E-value=0.07 Score=40.23 Aligned_cols=31 Identities=26% Similarity=0.659 Sum_probs=22.0
Q ss_pred cCCCCCCCcc------------ccc----ccc-ceeecCCCCceeeee
Q 026283 181 KGACPACKRE------------FIG----SKS-QIIRCAGCGNIVWQP 211 (240)
Q Consensus 181 eg~CPvC~~e------------FtG----~nn-t~~~CpnCGe~l~v~ 211 (240)
++.||.|+.+ +-| +.+ ....|++|||.+.-+
T Consensus 2 ~M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK 49 (133)
T ss_dssp CCBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCH
T ss_pred CcCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecH
Confidence 4689999875 223 234 566799999998654
No 16
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.75 E-value=0.13 Score=37.36 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=28.9
Q ss_pred hhhcCCCCCCCccccccccceeecCCCCceeeeeCC
Q 026283 178 FVIKGACPACKREFIGSKSQIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 178 nLIeg~CPvC~~eFtG~nnt~~~CpnCGe~l~v~~g 213 (240)
.-++-.|..|+.++.=-.+..++||+||.-+....-
T Consensus 18 ~~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 18 ATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp -CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBCCC
T ss_pred CCeEEECCCCCCeeecCCCCceECCCCCcEEEEEec
Confidence 357788999999998556788999999988776543
No 17
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.58 E-value=0.13 Score=38.00 Aligned_cols=36 Identities=36% Similarity=0.766 Sum_probs=29.8
Q ss_pred hhcCCCCCCCcccccc--ccceeecCCCCceeeeeCCC
Q 026283 179 VIKGACPACKREFIGS--KSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~--nnt~~~CpnCGe~l~v~~g~ 214 (240)
.+.-+||.|+++=+=| -+++..|.+||.+|-+|-|.
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGG 42 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGG 42 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSS
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEeecCCc
Confidence 3556899999987655 46788999999999999884
No 18
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=90.47 E-value=0.11 Score=42.83 Aligned_cols=29 Identities=31% Similarity=0.938 Sum_probs=24.6
Q ss_pred hhcCCCCCCCccccccccceeecCCCCcee
Q 026283 179 VIKGACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
.|...|+.|+...+=.. +..+||+||..-
T Consensus 138 vv~a~~~~~g~~m~~~~-~~~~cp~~g~~e 166 (179)
T 3m7n_A 138 VLRALCSNCKTEMVREG-DILKCPECGRVE 166 (179)
T ss_dssp EEECBCTTTCCBCEECS-SSEECSSSCCEE
T ss_pred EEEecccccCCceEECC-CEEECCCCCCEE
Confidence 46789999999997766 899999999754
No 19
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=90.02 E-value=0.17 Score=36.50 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=18.9
Q ss_pred CCCCCCccccccccceeecCCCCceeeeeC
Q 026283 183 ACPACKREFIGSKSQIIRCAGCGNIVWQPE 212 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCGe~l~v~~ 212 (240)
.||+|+.=-. .-+||.||++..++.
T Consensus 8 ~C~~CgvYTL-----k~~CP~CG~~T~~~h 32 (60)
T 2apo_B 8 KCPKCGLYTL-----KEICPKCGEKTVIPK 32 (60)
T ss_dssp ECTTTCCEES-----SSBCSSSCSBCBCCC
T ss_pred eCCCCCCEec-----cccCcCCCCcCCCCC
Confidence 5999963222 567999999987765
No 20
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=89.41 E-value=0.15 Score=37.58 Aligned_cols=33 Identities=24% Similarity=0.672 Sum_probs=24.3
Q ss_pred CCCCCCcccccccc-ceeecCCCCceeeeeCCCccc
Q 026283 183 ACPACKREFIGSKS-QIIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 183 ~CPvC~~eFtG~nn-t~~~CpnCGe~l~v~~g~F~s 217 (240)
-|| |+.-..-=.. --.+|| ||+.+.+.+-..|-
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~ 39 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFG 39 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBS
T ss_pred ECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEE
Confidence 499 9987654433 345899 99999999876544
No 21
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=89.09 E-value=0.13 Score=35.15 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=18.1
Q ss_pred CCCCCCcccccccc-------ce--eecCCCCce
Q 026283 183 ACPACKREFIGSKS-------QI--IRCAGCGNI 207 (240)
Q Consensus 183 ~CPvC~~eFtG~nn-------t~--~~CpnCGe~ 207 (240)
.|++|||.+-.-.+ -. -+||.||..
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 69999999973322 22 389999964
No 22
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=88.22 E-value=0.34 Score=33.88 Aligned_cols=32 Identities=28% Similarity=0.565 Sum_probs=26.8
Q ss_pred CCCCCCCccccccccceeecC--CCCceeeeeCCC
Q 026283 182 GACPACKREFIGSKSQIIRCA--GCGNIVWQPEGD 214 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~Cp--nCGe~l~v~~g~ 214 (240)
-.||+|+.++. +..+...|+ +||..--|.+|-
T Consensus 11 L~CP~c~~~L~-~~~~~L~C~~~~c~~~YPI~dGI 44 (56)
T 2kpi_A 11 LACPACHAPLE-ERDAELICTGQDCGLAYPVRDGI 44 (56)
T ss_dssp CCCSSSCSCEE-EETTEEEECSSSCCCEEEEETTE
T ss_pred eeCCCCCCcce-ecCCEEEcCCcCCCcEEeeECCE
Confidence 38999999876 344889999 999999998884
No 23
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.18 E-value=0.3 Score=33.52 Aligned_cols=27 Identities=30% Similarity=0.886 Sum_probs=21.1
Q ss_pred CCCCCCcc-ccccccceeecCCCCceee
Q 026283 183 ACPACKRE-FIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~e-FtG~nnt~~~CpnCGe~l~ 209 (240)
.||.||.. |..-......|+.||-..+
T Consensus 21 ~CP~CG~~~fm~~~~~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 21 FCPRCGPGVFMADHGDRWACGKCGYTEW 48 (50)
T ss_dssp ECSSSCSSCEEEECSSEEECSSSCCEEE
T ss_pred cCCCCCCceEEecCCCeEECCCCCCEEE
Confidence 59999864 6666777889999997765
No 24
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=88.02 E-value=0.18 Score=41.65 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=18.5
Q ss_pred CCCCCCCccccccccceeecCCCCce
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
-.||+|||-..| ...-.||-||-+
T Consensus 139 ~~C~~CG~i~~~--~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD--EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES--CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC--CCCCCCCCCCCC
Confidence 459999998885 344599999953
No 25
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=88.02 E-value=0.2 Score=41.55 Aligned_cols=27 Identities=22% Similarity=0.706 Sum_probs=25.2
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.||.|+.|+|=-.+....||-||-.-
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCcceEecCCeEECCcccccc
Confidence 689999999999999999999999874
No 26
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=87.86 E-value=0.21 Score=35.93 Aligned_cols=30 Identities=23% Similarity=0.689 Sum_probs=19.6
Q ss_pred cCCCCCCCcc-cc-----------c----ccc-ceeecCCCCceeee
Q 026283 181 KGACPACKRE-FI-----------G----SKS-QIIRCAGCGNIVWQ 210 (240)
Q Consensus 181 eg~CPvC~~e-Ft-----------G----~nn-t~~~CpnCGe~l~v 210 (240)
++.||+|+.. +. | +.| .-..|++|||.+.-
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 4789999863 31 1 123 45679999998753
No 27
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=87.33 E-value=0.4 Score=34.69 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=18.8
Q ss_pred CCCCCCccccccccceeecCCCCceeeeeC
Q 026283 183 ACPACKREFIGSKSQIIRCAGCGNIVWQPE 212 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCGe~l~v~~ 212 (240)
.||+|+.--. .-+||.||++..++.
T Consensus 7 ~C~~Cg~YTL-----k~~CP~CG~~t~~ah 31 (60)
T 2aus_D 7 KCPKCGRYTL-----KETCPVCGEKTKVAH 31 (60)
T ss_dssp ECTTTCCEES-----SSBCTTTCSBCEESS
T ss_pred ECCCCCCEEc-----cccCcCCCCccCCCC
Confidence 5999963221 556999999988876
No 28
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.06 E-value=0.34 Score=35.46 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=29.0
Q ss_pred hcCCCCCCCcccccc--ccceeecCCCCceeeeeCCC
Q 026283 180 IKGACPACKREFIGS--KSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~--nnt~~~CpnCGe~l~v~~g~ 214 (240)
+.-.||.|+++=+=| -++...|.+||..|-+|-|.
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGG 50 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGG 50 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSS
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCC
Confidence 455799999987655 46788999999999999884
No 29
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=86.92 E-value=0.36 Score=37.57 Aligned_cols=32 Identities=3% Similarity=0.017 Sum_probs=26.4
Q ss_pred CCCCCCCccccccc----------------------------cceeecCCCCceeeeeCC
Q 026283 182 GACPACKREFIGSK----------------------------SQIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 182 g~CPvC~~eFtG~n----------------------------nt~~~CpnCGe~l~v~~g 213 (240)
-.||+|+.+..-.. .+...|++||-.--|.+|
T Consensus 9 LaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dG 68 (97)
T 2k5r_A 9 LCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDS 68 (97)
T ss_dssp CCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETT
T ss_pred eECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCC
Confidence 38999999877654 357899999999888887
No 30
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=86.52 E-value=0.37 Score=40.28 Aligned_cols=28 Identities=25% Similarity=0.694 Sum_probs=24.1
Q ss_pred cCCCCCCCccccccccceeecCCCCceee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
...|+.|+.+|+ +.+..-.|.+||+++=
T Consensus 161 ~~~C~~C~~~F~-~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 161 GRVCHRCRVEFT-FTNRKHHCRNCGQVFC 188 (220)
T ss_dssp CSBCTTTCCBCC-SSSCCEECTTTCCEEC
T ss_pred CCccCCCCCccC-CcccccccCCcCCEEC
Confidence 379999999997 7778899999999864
No 31
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=86.01 E-value=0.47 Score=33.86 Aligned_cols=27 Identities=26% Similarity=0.730 Sum_probs=23.2
Q ss_pred cCCCCCCCccccccccceeecCCCCcee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
...|..|+.+|+ +.+..-.|.+||+++
T Consensus 11 ~~~C~~C~~~F~-~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 11 SDACMICSKKFS-LLNRKHHCRSCGGVF 37 (73)
T ss_dssp CSBCTTTCCBCB-TTBCCEECTTTCCEE
T ss_pred CCcccCCCCccC-CccccccCCCCCEEE
Confidence 368999999997 667889999999986
No 32
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=85.88 E-value=0.47 Score=34.58 Aligned_cols=27 Identities=30% Similarity=0.769 Sum_probs=23.0
Q ss_pred CCCCCCCccccccccceeecCCCCceee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
..|..|+.+|+ +.+..-.|.+||+++=
T Consensus 20 ~~C~~C~~~Fs-~~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 20 THCRQCEKEFS-ISRRKHHCRNCGHIFC 46 (82)
T ss_dssp CBCTTTCCBCB-TTBCCEECTTTCCEEC
T ss_pred CcccCcCCccc-CccccccCCCCCCEEC
Confidence 36999999997 6778889999999863
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.48 E-value=0.38 Score=41.20 Aligned_cols=35 Identities=26% Similarity=0.627 Sum_probs=26.7
Q ss_pred hhcCCCCCCCccccc-------cccceeecCCCCceeeeeCC
Q 026283 179 VIKGACPACKREFIG-------SKSQIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 179 LIeg~CPvC~~eFtG-------~nnt~~~CpnCGe~l~v~~g 213 (240)
|..|.|-.|...... -.+..++||+||-+|..+..
T Consensus 196 v~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 196 IKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEGA 237 (256)
T ss_dssp CBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSCC
T ss_pred eeCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeCcc
Confidence 346789999987642 24578999999999987643
No 34
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=85.30 E-value=0.34 Score=38.40 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=22.3
Q ss_pred hhcCCCCCCCccccccccceeecCCCCce
Q 026283 179 VIKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
+.+-.|-.|||.|.--.+...+||.|+-.
T Consensus 65 v~p~~C~~CG~~F~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCCCCSSCCSSCSSSCCC
T ss_pred EECcChhhCcCeecccCCCCCCCcCCCCC
Confidence 56778999999994334566899999843
No 35
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=85.22 E-value=0.51 Score=36.07 Aligned_cols=35 Identities=23% Similarity=0.549 Sum_probs=29.0
Q ss_pred hcCCCCCCCcccccc--ccceeecCCCCceeeeeCCC
Q 026283 180 IKGACPACKREFIGS--KSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~--nnt~~~CpnCGe~l~v~~g~ 214 (240)
+.-.||.|.++=|=| -+++..|.+||.+|-+|-|.
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGG 67 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGG 67 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSS
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCC
Confidence 455899999987655 46788999999999999874
No 36
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.03 E-value=0.48 Score=40.20 Aligned_cols=28 Identities=25% Similarity=0.657 Sum_probs=24.0
Q ss_pred cCCCCCCCccccccccceeecCCCCceee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
...|..|+.+|+ +.+..-.|.+||.++=
T Consensus 164 ~~~C~~C~~~F~-~~~RrhHCR~CG~v~C 191 (226)
T 3zyq_A 164 AEECHRCRVQFG-VMTRKHHCRACGQIFC 191 (226)
T ss_dssp CSBCTTTCCBCB-TTBCCEECTTTCCEEC
T ss_pred CCCCcCcCCCCC-ccccccccCCCcCEeC
Confidence 368999999998 7788899999998853
No 37
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.92 E-value=0.6 Score=34.08 Aligned_cols=27 Identities=30% Similarity=0.770 Sum_probs=23.0
Q ss_pred CCCCCCCccccccccceeecCCCCceee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
..|..|+.+| ++.+..--|.+||+++=
T Consensus 15 ~~C~~C~~~F-~~~~RrHHCR~CG~vfC 41 (84)
T 1x4u_A 15 GNCTGCSATF-SVLKKRRSCSNCGNSFC 41 (84)
T ss_dssp SSCSSSCCCC-CSSSCCEECSSSCCEEC
T ss_pred CcCcCcCCcc-ccchhhhhhcCCCcEEC
Confidence 3799999999 57788889999998853
No 38
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=84.50 E-value=0.22 Score=36.87 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=17.6
Q ss_pred hcCCCCCCCccccccccceeecCCCCce
Q 026283 180 IKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
-|-+|..|++ .+ ....|||||..
T Consensus 10 ~~~AC~~C~~-~~----~~~~CPnC~s~ 32 (69)
T 1ryq_A 10 SEKACRHCHY-IT----SEDRCPVCGSR 32 (69)
T ss_dssp -CEEETTTCB-EE----SSSSCTTTCCC
T ss_pred hhhhHHhCCc-cc----cCCcCCCccCC
Confidence 3668999999 44 67789999954
No 39
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=84.44 E-value=0.59 Score=34.74 Aligned_cols=26 Identities=23% Similarity=0.691 Sum_probs=22.7
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
..|..|+..|+ +.+..-.|.+||+++
T Consensus 21 ~~C~~C~~~F~-~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFT-FTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCC-SSSCCEECTTTCCEE
T ss_pred CcCcCCCCccc-chhhCccccCCCCEE
Confidence 46999999997 667888999999987
No 40
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=84.08 E-value=0.53 Score=37.20 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=24.7
Q ss_pred cCCCCCCCcccccccc-----ceeecCCCCceeeeeC
Q 026283 181 KGACPACKREFIGSKS-----QIIRCAGCGNIVWQPE 212 (240)
Q Consensus 181 eg~CPvC~~eFtG~nn-----t~~~CpnCGe~l~v~~ 212 (240)
.-.|| ||..|.=... ..++|++|...+.|-=
T Consensus 112 ~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~~v~~ 147 (155)
T 2l6l_A 112 YLSCR-CGGKYSVSKDEAEEVSLISCDTCSLIIELLH 147 (155)
T ss_dssp EEECS-SSCEEEEETTHHHHCCEEECSSSSCEEEEEC
T ss_pred EEcCC-CCCeEEecHHHhCCCCEEECCCCceEEEEEE
Confidence 45799 9998876554 6799999999988753
No 41
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=83.93 E-value=0.48 Score=36.28 Aligned_cols=35 Identities=23% Similarity=0.596 Sum_probs=29.0
Q ss_pred hcCCCCCCCcccccc--ccceeecCCCCceeeeeCCC
Q 026283 180 IKGACPACKREFIGS--KSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~--nnt~~~CpnCGe~l~v~~g~ 214 (240)
+.-.||.|+++=+=| -+++..|.+||.+|-+|-|.
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGG 69 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGG 69 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSS
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCC
Confidence 455799999987655 46778999999999999874
No 42
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=83.72 E-value=0.54 Score=41.60 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.1
Q ss_pred CCCCCCCccccccccceeecCCCCceee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
-.|-.|+..|.|+-++..+|.+||..+-
T Consensus 358 t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 358 TSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCccccchhceeCCCCCCCCCCcCccc
Confidence 4688999999999999999999998763
No 43
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=83.65 E-value=0.64 Score=36.58 Aligned_cols=28 Identities=32% Similarity=0.691 Sum_probs=23.7
Q ss_pred CCCCCCCccccccccceeecCCCCceeee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l~v 210 (240)
..|+.|+..|+ +.+..-.|.+||.++=-
T Consensus 70 ~~C~~C~~~Fs-~~~RrHHCR~CG~vfC~ 97 (125)
T 1joc_A 70 QNCMACGKGFS-VTVRRHHCRQCGNIFCA 97 (125)
T ss_dssp CBCTTTCCBCC-SSSCCEECTTTCCEECG
T ss_pred CCCcCcCCccc-cccccccCCCCCeEECh
Confidence 47999999997 66788899999998744
No 44
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=83.11 E-value=0.53 Score=41.99 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=23.2
Q ss_pred hcCCCCCCCcc---c-cccccceeecCCCCceee
Q 026283 180 IKGACPACKRE---F-IGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 180 Ieg~CPvC~~e---F-tG~nnt~~~CpnCGe~l~ 209 (240)
+...||.|+.. + +=.......|.+||-+|.
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 47789999884 2 334566889999999985
No 45
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.03 E-value=0.97 Score=34.29 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCCCCCccccccc------------cceeecCCCCceeeeeC--C--CcccCCCCC--CCCC
Q 026283 182 GACPACKREFIGSK------------SQIIRCAGCGNIVWQPE--G--DFFSRNGGG--KKST 226 (240)
Q Consensus 182 g~CPvC~~eFtG~n------------nt~~~CpnCGe~l~v~~--g--~F~s~~g~~--~~~r 226 (240)
..||+|+.+...-. ..+-.||.||.+|.+=+ | +||=..|++ |++|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~LiSkkr 65 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGLISKKR 65 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCCCCTTS
T ss_pred CCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCEeecce
Confidence 46777776654321 12236777777775532 2 444555555 4444
No 46
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=82.49 E-value=0.41 Score=36.28 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=21.7
Q ss_pred cCCCCCCCccccccc--------------cce--eecCCCCceeeeeCCCc
Q 026283 181 KGACPACKREFIGSK--------------SQI--IRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 181 eg~CPvC~~eFtG~n--------------nt~--~~CpnCGe~l~v~~g~F 215 (240)
.-.|++|+|.+.+-. .-. -.||-||. +..+|
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga----~K~~F 73 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA----AKSDF 73 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC----CGGGE
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC----CHHHc
Confidence 457999999998744 222 27999996 34555
No 47
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=81.17 E-value=0.46 Score=33.26 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=19.1
Q ss_pred CCCCCCCcccccccc--------------cee--ecCCCCce
Q 026283 182 GACPACKREFIGSKS--------------QII--RCAGCGNI 207 (240)
Q Consensus 182 g~CPvC~~eFtG~nn--------------t~~--~CpnCGe~ 207 (240)
-.|++|+|.+.+-.+ -.- .||.||..
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 469999999987542 222 89999964
No 48
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=80.56 E-value=0.58 Score=36.10 Aligned_cols=36 Identities=22% Similarity=0.582 Sum_probs=29.6
Q ss_pred hhcCCCCCCCcccccc--ccceeecCCCCceeeeeCCC
Q 026283 179 VIKGACPACKREFIGS--KSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~--nnt~~~CpnCGe~l~v~~g~ 214 (240)
.+.-.||.|+++=+=| -+++..|.+||.+|-+|-|.
T Consensus 34 Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGG 71 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGG 71 (86)
T ss_dssp EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSS
T ss_pred EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCC
Confidence 3456899999987655 46778999999999999874
No 49
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=80.41 E-value=0.61 Score=42.04 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=9.0
Q ss_pred hcCCCCCCCcc
Q 026283 180 IKGACPACKRE 190 (240)
Q Consensus 180 Ieg~CPvC~~e 190 (240)
-.+.|||||..
T Consensus 181 ~~~~CPvCGs~ 191 (309)
T 2fiy_A 181 SRTLCPACGSP 191 (309)
T ss_dssp TCSSCTTTCCC
T ss_pred cCCCCCCCCCc
Confidence 36999999974
No 50
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.12 E-value=1.1 Score=32.77 Aligned_cols=27 Identities=26% Similarity=0.674 Sum_probs=22.5
Q ss_pred CCCCCCCccccccccceeecCCCCceee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
..|..|+.+|+ +.+..-.|.+||+++=
T Consensus 22 ~~C~~C~~~Fs-~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 22 PACNGCGCVFT-TTVRRHHCRNCGYVLC 48 (84)
T ss_dssp CBCTTTCCBCC-TTSCCEECTTTCCEEC
T ss_pred CCCcCcCCccc-cchhcccccCCCcEEC
Confidence 47999999987 5568889999999863
No 51
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=80.01 E-value=0.8 Score=31.67 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=18.9
Q ss_pred CCCCCCCccccccccc--------------e--eecCCCCce
Q 026283 182 GACPACKREFIGSKSQ--------------I--IRCAGCGNI 207 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt--------------~--~~CpnCGe~ 207 (240)
-.|++|+|.+.+-.+. . -.||.||..
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp EECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 4699999999854422 2 279999963
No 52
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=79.76 E-value=0.73 Score=30.15 Aligned_cols=33 Identities=27% Similarity=0.622 Sum_probs=25.2
Q ss_pred CCCCCCccccccc--------cceeecCCCCceeeeeCCCc
Q 026283 183 ACPACKREFIGSK--------SQIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 183 ~CPvC~~eFtG~n--------nt~~~CpnCGe~l~v~~g~F 215 (240)
.||.|++.|.-.. .....|+.||......+...
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~~ 56 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAM 56 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTCS
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCcccc
Confidence 6999999886533 24578999999887776654
No 53
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=79.71 E-value=1.2 Score=33.16 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=21.6
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
..|..|+.+|+ +.+..-.|.+||+++
T Consensus 10 ~~C~~C~~~F~-~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVKFT-LFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCC-SSSCEEECSSSCCEE
T ss_pred CCCcCcCCccc-CccccccCCCCCCEE
Confidence 47999999998 557888899999875
No 54
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=79.34 E-value=0.49 Score=36.25 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=19.6
Q ss_pred hcCCCCCCCccccccc--------------ccee--ecCCCCc
Q 026283 180 IKGACPACKREFIGSK--------------SQII--RCAGCGN 206 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~n--------------nt~~--~CpnCGe 206 (240)
..-.|++|||.+.+-. .-.- .||.||.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 3567999999998743 2222 7999996
No 55
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=79.24 E-value=1.1 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHhhhhhcCCCCCCCc-cccccccc----eeecCCCCceeee--eCCCc
Q 026283 173 TVANNFVIKGACPACKR-EFIGSKSQ----IIRCAGCGNIVWQ--PEGDF 215 (240)
Q Consensus 173 wWlkRnLIeg~CPvC~~-eFtG~nnt----~~~CpnCGe~l~v--~~g~F 215 (240)
-|+.+| +-||.||. ....|.|- ...||+|+|.... .+|.+
T Consensus 29 ~Wv~~n---~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~~~~ 75 (257)
T 4esj_A 29 DWVYRQ---SYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSKKGNF 75 (257)
T ss_dssp HHHHHH---CCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEEESSC
T ss_pred HHHHHC---CcCCCCCChhhhhccCCCcccccccCCcchhheeccccCcc
Confidence 455444 68999999 46566543 3789999997554 44554
No 56
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=79.21 E-value=0.9 Score=40.86 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=22.9
Q ss_pred hcCCCCCCCc---cc-cccccceeecCCCCceee
Q 026283 180 IKGACPACKR---EF-IGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 180 Ieg~CPvC~~---eF-tG~nnt~~~CpnCGe~l~ 209 (240)
++-.||.|+. .+ .=+......|.+||-+|.
T Consensus 20 ~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp --CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEE
T ss_pred cCCcCCCCCCCCCceeEECCCCcEEeCCCCCCcc
Confidence 3668999995 22 356889999999999886
No 57
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=78.89 E-value=0.71 Score=31.96 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=18.9
Q ss_pred CCCCCCCccccccc--------------ccee--ecCCCCce
Q 026283 182 GACPACKREFIGSK--------------SQII--RCAGCGNI 207 (240)
Q Consensus 182 g~CPvC~~eFtG~n--------------nt~~--~CpnCGe~ 207 (240)
-.|++|+|.+.+-. .-.- .||-||..
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 36999999998753 2222 79999964
No 58
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=78.73 E-value=0.86 Score=31.07 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=15.0
Q ss_pred CCCCCCCcccccccccee-----------ecCCCCce
Q 026283 182 GACPACKREFIGSKSQII-----------RCAGCGNI 207 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~-----------~CpnCGe~ 207 (240)
-.||.|+.+=.-+.+.|+ .|++||..
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 457777765554444443 56666654
No 59
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=78.36 E-value=1.2 Score=35.43 Aligned_cols=27 Identities=19% Similarity=0.586 Sum_probs=22.9
Q ss_pred cCCCCCCCccccccccceeecCCCCcee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
+..|..|+.+|+ +.+..-.|.+||+++
T Consensus 19 ~~~C~~C~~~Fs-~~~RkHHCR~CG~if 45 (120)
T 1y02_A 19 EPSCKSCGAHFA-NTARKQTCLDCKKNF 45 (120)
T ss_dssp -CCCTTTCCCCS-SGGGCEECTTTCCEE
T ss_pred cCcccCcCCccc-cccccccCCCCCCee
Confidence 468999999997 567888999999986
No 60
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=78.08 E-value=0.96 Score=39.39 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=24.3
Q ss_pred hhcCCCCCCCc---cc-cccccceeecCCCCceee
Q 026283 179 VIKGACPACKR---EF-IGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 179 LIeg~CPvC~~---eF-tG~nnt~~~CpnCGe~l~ 209 (240)
-+.-.||.|+. ++ +=.......|.+||.+|.
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 34558999997 23 346788999999999985
No 61
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=77.80 E-value=1.2 Score=31.10 Aligned_cols=27 Identities=26% Similarity=0.714 Sum_probs=20.5
Q ss_pred CCCCCCCc-cccccccceeecCCCCcee
Q 026283 182 GACPACKR-EFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~-eFtG~nnt~~~CpnCGe~l 208 (240)
-.||.||. .|..-......|+.||-..
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 46999997 5555555688999999875
No 62
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=76.34 E-value=0.47 Score=46.32 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=4.4
Q ss_pred hhhcCCCCCCCcccc-ccccceeecCCCCc
Q 026283 178 FVIKGACPACKREFI-GSKSQIIRCAGCGN 206 (240)
Q Consensus 178 nLIeg~CPvC~~eFt-G~nnt~~~CpnCGe 206 (240)
|.--+.||+|||.-. |.....-.||.||+
T Consensus 537 n~~~~~C~~CGy~~~~~~~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 537 NMPVDKCFTCGSTHEMTPTENGFVCSICGE 566 (605)
T ss_dssp ECCEEET-----------------------
T ss_pred CCCCccCcccCCcCccCccccCCcCCCCCC
Confidence 344578999997432 33334578999995
No 63
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=76.10 E-value=0.42 Score=47.31 Aligned_cols=37 Identities=27% Similarity=0.639 Sum_probs=27.4
Q ss_pred hcCCCCCCCcccccccc-ceeecCC--CCceeeeeCCCcccC
Q 026283 180 IKGACPACKREFIGSKS-QIIRCAG--CGNIVWQPEGDFFSR 218 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nn-t~~~Cpn--CGe~l~v~~g~F~s~ 218 (240)
.-..||+|+.++ ..+ ...+|+| |-..+...=-||.|+
T Consensus 402 ~P~~CP~Cgs~l--~~g~~~~~C~n~~Cpaq~~~~l~hf~sr 441 (667)
T 1dgs_A 402 WPEACPECGHRL--VKEGKVHRCPNPLCPAKRFEAIRHYASR 441 (667)
T ss_dssp CCSBCTTTCCBC--EEETTEEECCCTTCGGGHHHHHHHHHST
T ss_pred CCCCCCCCCCCc--cCCCeEEEeCCCCChhHHHHHHHHHhcc
Confidence 346899999999 444 6689999 887776666677443
No 64
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.57 E-value=1.7 Score=34.47 Aligned_cols=46 Identities=24% Similarity=0.576 Sum_probs=30.3
Q ss_pred hcCCCCCCCcccccccc-------------ceeecCCCCceeeeeC--C--CcccCCCCC--CCCC
Q 026283 180 IKGACPACKREFIGSKS-------------QIIRCAGCGNIVWQPE--G--DFFSRNGGG--KKST 226 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nn-------------t~~~CpnCGe~l~v~~--g--~F~s~~g~~--~~~r 226 (240)
.+..||.|+.|.+= ++ .+-.||-|+++|++=+ | +||=..|.+ |++|
T Consensus 31 M~~~CP~Cq~eL~~-~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgLiSKkR 95 (101)
T 2jne_A 31 MELHCPQCQHVLDQ-DNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKR 95 (101)
T ss_dssp CCCBCSSSCSBEEE-ETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEEECTTT
T ss_pred ccccCccCCCccee-cCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCceeecce
Confidence 66789999999752 22 3346888888887755 2 555556665 4444
No 65
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=75.36 E-value=0.58 Score=46.09 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=0.9
Q ss_pred hcCCCCCCCccccc-ccc-ceeecCC---CCceeeeeCCCcccCC
Q 026283 180 IKGACPACKREFIG-SKS-QIIRCAG---CGNIVWQPEGDFFSRN 219 (240)
Q Consensus 180 Ieg~CPvC~~eFtG-~nn-t~~~Cpn---CGe~l~v~~g~F~s~~ 219 (240)
+-..||+|+.+.+= ..+ ...+|+| |-..+...=-||.|+.
T Consensus 414 ~P~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~~~~l~hf~Sr~ 458 (615)
T 3sgi_A 414 MPTTCPECGSPLAPEKEGDADIRCPNARGCPGQLRERVFHVASRN 458 (615)
T ss_dssp CC-------------------------------------------
T ss_pred CCCCCCCCCCeeeecCCCCEEEEcCCCCCCHHHHHHHHHHHhccC
Confidence 34689999999864 233 4689998 9988888888996654
No 66
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=75.03 E-value=1.7 Score=33.58 Aligned_cols=32 Identities=28% Similarity=0.720 Sum_probs=27.4
Q ss_pred CCCCCCcccccccccee-ecCCCCceeeeeCCCc
Q 026283 183 ACPACKREFIGSKSQII-RCAGCGNIVWQPEGDF 215 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~-~CpnCGe~l~v~~g~F 215 (240)
.|+ |+++.|.+.--.. .|++||+.-|..-|-+
T Consensus 50 kC~-C~~Rt~sl~r~P~~~C~~Cg~~~wer~~M~ 82 (92)
T 2kwq_A 50 KCP-CGNRTISLDRLPKKHCSTCGLFKWERVGML 82 (92)
T ss_dssp ECT-TSCEEEESSSSCCSCCTTTCSCCCEEECCC
T ss_pred ECC-CCCceeEeeeCCCCCCCCCCCCceEEeecc
Confidence 598 9999999965544 8999999999888876
No 67
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=74.52 E-value=1.6 Score=32.15 Aligned_cols=31 Identities=23% Similarity=0.639 Sum_probs=22.7
Q ss_pred cCCCCCCCcccccc-------------ccceeecCC--CCceeeee
Q 026283 181 KGACPACKREFIGS-------------KSQIIRCAG--CGNIVWQP 211 (240)
Q Consensus 181 eg~CPvC~~eFtG~-------------nnt~~~Cpn--CGe~l~v~ 211 (240)
...||+|..++..- ++-...||| |++.+...
T Consensus 58 ~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~gC~~~~~~~ 103 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLE 103 (116)
T ss_dssp CSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCSTTCCCEEEHH
T ss_pred cCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCCCCcchhhHh
Confidence 45899999998752 235678996 99887653
No 68
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=74.26 E-value=1.1 Score=32.77 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=19.6
Q ss_pred cCCCCCCCccccccc--------------cce--eecCCCCce
Q 026283 181 KGACPACKREFIGSK--------------SQI--IRCAGCGNI 207 (240)
Q Consensus 181 eg~CPvC~~eFtG~n--------------nt~--~~CpnCGe~ 207 (240)
.-.|++|+|.+.+-. .-. -.||-||..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 357999999998644 222 289999974
No 69
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=74.16 E-value=1.6 Score=30.62 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=22.3
Q ss_pred CCCCCCcccccccc---ceeecCCCCceeeee
Q 026283 183 ACPACKREFIGSKS---QIIRCAGCGNIVWQP 211 (240)
Q Consensus 183 ~CPvC~~eFtG~nn---t~~~CpnCGe~l~v~ 211 (240)
.|--|+.+|+--.- ..++||.||--+-..
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEEC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEE
Confidence 58899999987654 357999999776543
No 70
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=73.90 E-value=1.4 Score=38.19 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=20.9
Q ss_pred cCCCCCCCcccc-ccccceeecCCCCce
Q 026283 181 KGACPACKREFI-GSKSQIIRCAGCGNI 207 (240)
Q Consensus 181 eg~CPvC~~eFt-G~nnt~~~CpnCGe~ 207 (240)
.--||.||.... .-.....+||+||.+
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred CCccccCCCcCccCCCceeeeCCCCCCE
Confidence 468999998873 444567799999975
No 71
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=73.71 E-value=1.4 Score=33.09 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=22.0
Q ss_pred cCCCCCCCccc-cccccceeecCCCCceeeeeCCCc
Q 026283 181 KGACPACKREF-IGSKSQIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 181 eg~CPvC~~eF-tG~nnt~~~CpnCGe~l~v~~g~F 215 (240)
+-.||.|+... .-.-..+-.|+.||.. +..|-+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~--~aggay 60 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYK--FTGGSY 60 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCE--EECCSS
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCE--ecCCEe
Confidence 55799999843 2233457899999984 344433
No 72
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=72.63 E-value=2.2 Score=27.05 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=8.9
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
..||+|..++.|
T Consensus 44 ~~CP~Cr~~~~g 55 (55)
T 2ecm_A 44 YRCPLCSGPSSG 55 (55)
T ss_dssp CCCTTSCCSSCC
T ss_pred CcCCCCCCcCCC
Confidence 678888777765
No 73
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=72.39 E-value=0.76 Score=40.71 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=0.0
Q ss_pred cCCCCCCCccccccccceeecCCCCceee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
...|+.|+.+|+ +....-.|.+||.++=
T Consensus 375 ~~~c~~c~~~f~-~~~r~h~Cr~Cg~~~C 402 (434)
T 3mpx_A 375 VMMCMNCGCDFS-LTLRRHHCHACGKIVC 402 (434)
T ss_dssp -----------------------------
T ss_pred CCcCCCcCCCCC-CcchhhhcccCcCEee
Confidence 367999999997 7778899999998764
No 74
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=71.98 E-value=1.3 Score=36.36 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=21.3
Q ss_pred cCCCCCCCcccccc--------ccceeecCCCCceeeeeC
Q 026283 181 KGACPACKREFIGS--------KSQIIRCAGCGNIVWQPE 212 (240)
Q Consensus 181 eg~CPvC~~eFtG~--------nnt~~~CpnCGe~l~v~~ 212 (240)
+-.||.|+++-+-. ......||.||+.+.+..
T Consensus 78 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e 117 (166)
T 3ir9_A 78 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTD 117 (166)
T ss_dssp EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEE
T ss_pred EEECCCCCceeEEEeecChhhcccccccccccCccchhhh
Confidence 45799999753221 123457999999887653
No 75
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=71.26 E-value=1.2 Score=37.18 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=26.3
Q ss_pred hhhcCCCCCCCccccccccceeecCCCCce
Q 026283 178 FVIKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 178 nLIeg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
++...+||.|+.-.+-..+..-+|+.|++.
T Consensus 39 ~~~Y~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 39 KLYYYRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp CCEEEECTTSCCCEEEETTTEEEETTTTEE
T ss_pred cEEehhchhhCCEeeeCCCCeEECCCCCCC
Confidence 678889999999998666778899999997
No 76
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=70.92 E-value=1.6 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=17.7
Q ss_pred CCCCCCccccccccc----------------eeecCCCCce
Q 026283 183 ACPACKREFIGSKSQ----------------IIRCAGCGNI 207 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt----------------~~~CpnCGe~ 207 (240)
.|++|+|.+-.-.+- .-.||.||..
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 699999988654321 1289999974
No 77
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=70.80 E-value=1.1 Score=41.94 Aligned_cols=27 Identities=33% Similarity=0.700 Sum_probs=17.1
Q ss_pred hhhhcCCCCCCCccccccccceeecCCCCce
Q 026283 177 NFVIKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 177 RnLIeg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
...|+|.||.|+++= ..--+|.+||..
T Consensus 151 ~~~v~g~cp~c~~~~----~~gd~ce~cg~~ 177 (560)
T 3h99_A 151 DRFVKGTCPKCKSPD----QYGDNCEVCGAT 177 (560)
T ss_dssp GGGEEEECTTTCCSS----EETTBCTTTCCB
T ss_pred chhcCCCCCCCCCcc----cccchhhhcccc
Confidence 456789999998641 111257777753
No 78
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=70.79 E-value=1.3 Score=33.62 Aligned_cols=35 Identities=17% Similarity=0.412 Sum_probs=24.2
Q ss_pred cCCCCCCCccccccc---cceeecCCCCceeeeeCCCc
Q 026283 181 KGACPACKREFIGSK---SQIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 181 eg~CPvC~~eFtG~n---nt~~~CpnCGe~l~v~~g~F 215 (240)
+.-||-|+.+.--++ -....|++|+|.+.=..=.|
T Consensus 31 ~afCPeCgq~Le~lkACGA~~yFC~~C~~LiSkkrv~f 68 (81)
T 2jrp_A 31 QALCPDCRQPLQVLKACGAVDYFCQNGHGLISKKRVNF 68 (81)
T ss_dssp EEECSSSCSCCCEEEETTEEEECCTTTTCCCCTTSSEE
T ss_pred cccCcchhhHHHHHHhcCCcCeeeccCCCEeecceEEE
Confidence 447898888875442 23678999999876555554
No 79
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=70.18 E-value=1.6 Score=31.06 Aligned_cols=18 Identities=39% Similarity=1.036 Sum_probs=9.6
Q ss_pred CCCCCccccccccceeecCCCC
Q 026283 184 CPACKREFIGSKSQIIRCAGCG 205 (240)
Q Consensus 184 CPvC~~eFtG~nnt~~~CpnCG 205 (240)
||.||.. .-.-..||+||
T Consensus 33 c~~cG~~----~~pH~vc~~CG 50 (60)
T 2zjr_Z 33 CPQCHGK----KLSHHICPNCG 50 (60)
T ss_dssp CTTTCCE----ECTTBCCTTTC
T ss_pred CCCCCCE----eCCceEcCCCC
Confidence 5555543 34445556665
No 80
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=69.57 E-value=1.6 Score=31.16 Aligned_cols=19 Identities=42% Similarity=1.048 Sum_probs=10.0
Q ss_pred CCCCCCccccccccceeecCCCC
Q 026283 183 ACPACKREFIGSKSQIIRCAGCG 205 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCG 205 (240)
.||.||. +.-.-..||+||
T Consensus 32 ~c~~cGe----~~~~H~vc~~CG 50 (60)
T 3v2d_5 32 PCPECKA----MKPPHTVCPECG 50 (60)
T ss_dssp ECTTTCC----EECTTSCCTTTC
T ss_pred ECCCCCC----eecceEEcCCCC
Confidence 3566654 344444566665
No 81
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.69 E-value=0.61 Score=46.25 Aligned_cols=40 Identities=28% Similarity=0.637 Sum_probs=29.5
Q ss_pred hcCCCCCCCcccccccc-ceeecCC---CCceeeeeCCCcccCC
Q 026283 180 IKGACPACKREFIGSKS-QIIRCAG---CGNIVWQPEGDFFSRN 219 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nn-t~~~Cpn---CGe~l~v~~g~F~s~~ 219 (240)
.-..||+|+.+.+=..+ ...+|+| |-..+...=-||.||.
T Consensus 404 ~P~~CP~Cgs~l~~~~~~~~~rC~n~~~Cpaq~~~~l~hf~sr~ 447 (671)
T 2owo_A 404 FPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRR 447 (671)
T ss_dssp CCSBCTTTCCBEEECTTCSCEEECCGGGCHHHHHHHHHHHHSTT
T ss_pred CCCCCCCCCCEeEEecCCEEEECCCCCCCHHHHHHHHHHHhhhh
Confidence 44689999999875544 7788994 8877776667885543
No 82
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=68.57 E-value=6.6 Score=30.92 Aligned_cols=42 Identities=24% Similarity=0.506 Sum_probs=28.4
Q ss_pred HHHHhhhhhcCCCCCCCcccc---------c-----cccceeecCCCCceeeeeCCCc
Q 026283 172 GTVANNFVIKGACPACKREFI---------G-----SKSQIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 172 ~wWlkRnLIeg~CPvC~~eFt---------G-----~nnt~~~CpnCGe~l~v~~g~F 215 (240)
+-.-+..++++.+|.|+--.. | -.+..+.|||||..| ..+.|
T Consensus 30 ~e~~~~k~l~~r~p~~k~y~~~~~~~lDIfG~~~~~~~s~~~~C~nC~R~v--aa~RF 85 (99)
T 3mhs_C 30 RETTQQQLLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDV--SANRL 85 (99)
T ss_dssp HHHHHHHHHHHHCTTCCCCCCCTTSCSCTTSCCCCCTTSCEEECTTTCCEE--EGGGH
T ss_pred HHHHHHHHHhccCCCCCCceecCCCCcccCCCcCcccCCCeEECCCCCCCc--hhhhh
Confidence 346778888999998853321 1 345678999999965 34444
No 83
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=67.95 E-value=4.3 Score=30.21 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCCCCCccccc------------cccceeecC--CCCceeeeeC
Q 026283 183 ACPACKREFIG------------SKSQIIRCA--GCGNIVWQPE 212 (240)
Q Consensus 183 ~CPvC~~eFtG------------~nnt~~~Cp--nCGe~l~v~~ 212 (240)
.||+|..++.- +++-...|| +|++.+...+
T Consensus 55 ~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~ 98 (118)
T 3hct_A 55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRH 98 (118)
T ss_dssp BCTTTCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGG
T ss_pred CCCCCCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHH
Confidence 89999998875 234568896 8999888765
No 84
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.44 E-value=1.3 Score=33.09 Aligned_cols=12 Identities=58% Similarity=1.351 Sum_probs=9.7
Q ss_pred cCCCCCCCcccc
Q 026283 181 KGACPACKREFI 192 (240)
Q Consensus 181 eg~CPvC~~eFt 192 (240)
.+.||+||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 667999998765
No 85
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=66.25 E-value=2 Score=25.56 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=14.3
Q ss_pred CCCCCCcccccc-----------ccceeecCCCC
Q 026283 183 ACPACKREFIGS-----------KSQIIRCAGCG 205 (240)
Q Consensus 183 ~CPvC~~eFtG~-----------nnt~~~CpnCG 205 (240)
.|+.|++.|.-- .....+||.||
T Consensus 12 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 12 SCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp EETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred cCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 588888877542 22345677775
No 86
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=65.91 E-value=1.6 Score=37.12 Aligned_cols=29 Identities=17% Similarity=0.598 Sum_probs=20.2
Q ss_pred cCCCCCCCccccc-------cccceeecCCCCceee
Q 026283 181 KGACPACKREFIG-------SKSQIIRCAGCGNIVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG-------~nnt~~~CpnCGe~l~ 209 (240)
...|..|++++.- -....-.||.||.+|.
T Consensus 121 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lr 156 (246)
T 1yc5_A 121 EYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIR 156 (246)
T ss_dssp EEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEE
T ss_pred eeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCccC
Confidence 3569999987532 0114679999998874
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.47 E-value=2.3 Score=33.65 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=18.2
Q ss_pred hhcCCCCCCCcccccccc---ceeecCCCCceee
Q 026283 179 VIKGACPACKREFIGSKS---QIIRCAGCGNIVW 209 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~nn---t~~~CpnCGe~l~ 209 (240)
..+.-||-|+.+.-=++- ..-.|.+|-+.+.
T Consensus 59 ~~~a~CPdC~q~LevLkACGAvdYFC~~chgLiS 92 (101)
T 2jne_A 59 EMKALCPDCHQPLQVLKACGAVDYFCQHGHGLIS 92 (101)
T ss_dssp EEEEECTTTCSBCEEEEETTEEEEEETTTTEEEC
T ss_pred hccccCcchhhHHHHHHHhcCcchhhccCCceee
Confidence 346677877777654442 3345666665543
No 88
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=64.17 E-value=3.5 Score=34.80 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=22.4
Q ss_pred hcCCCCCCCccccccccceeecCCCCceeee
Q 026283 180 IKGACPACKREFIGSKSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt~~~CpnCGe~l~v 210 (240)
....|+.|+..-.........|++|+.+.-.
T Consensus 9 ~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~ 39 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPGREDRFFCPQCRALQAP 39 (207)
T ss_dssp --CBCSSSCCBCCSSCSCCCBCTTTCCBCCC
T ss_pred CCCCCCCCCCCcccccccccccccccccCCC
Confidence 4578999998754456778999999965443
No 89
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=63.98 E-value=3 Score=33.62 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=16.4
Q ss_pred CCCCCCccccccccceeecCCCCc
Q 026283 183 ACPACKREFIGSKSQIIRCAGCGN 206 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCGe 206 (240)
.||.|+....- .....+|++|..
T Consensus 4 ~Cp~C~~~~~~-~~~~~~C~~~~~ 26 (269)
T 1p91_A 4 SCPLCHQPLSR-EKNSYICPQRHQ 26 (269)
T ss_dssp BCTTTCCBCEE-ETTEEECTTCCE
T ss_pred cCCCCCcccee-CCCEEECCCCCc
Confidence 69999886544 223579999954
No 90
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=63.14 E-value=1.9 Score=37.60 Aligned_cols=28 Identities=21% Similarity=0.636 Sum_probs=19.9
Q ss_pred CCCCCCCccccc------c---c-cceeecCCCCceee
Q 026283 182 GACPACKREFIG------S---K-SQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG------~---n-nt~~~CpnCGe~l~ 209 (240)
..|..|++.+.. + + .....||.||.+|.
T Consensus 137 ~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~lr 174 (289)
T 1q1a_A 137 CHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVK 174 (289)
T ss_dssp EEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEE
T ss_pred eEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEEC
Confidence 569999987653 1 1 13579999998774
No 91
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=62.73 E-value=4.2 Score=25.77 Aligned_cols=18 Identities=28% Similarity=0.673 Sum_probs=14.6
Q ss_pred ccceeecCCCCceeeeeC
Q 026283 195 KSQIIRCAGCGNIVWQPE 212 (240)
Q Consensus 195 nnt~~~CpnCGe~l~v~~ 212 (240)
++....|+.||++|.+-.
T Consensus 3 ~~~fY~C~~CGnivev~~ 20 (36)
T 1dxg_A 3 EGDVYKCELCGQVVKVLE 20 (36)
T ss_dssp TTCEEECTTTCCEEEEEE
T ss_pred cccEEEcCCCCcEEEEEe
Confidence 456779999999999843
No 92
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=62.48 E-value=3.2 Score=33.92 Aligned_cols=33 Identities=24% Similarity=0.637 Sum_probs=25.9
Q ss_pred hhhhcCCCCC--CCccccccccceeecCCCCceee
Q 026283 177 NFVIKGACPA--CKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 177 RnLIeg~CPv--C~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
.|+...+||. |+.-.+--.+..-+|+.|++...
T Consensus 39 d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 39 ENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp STTEEEBCCSTTCCCBCEEETTTEEEETTTTEEES
T ss_pred CCEEECCCCchhcCCccccCCCCeEECCCCCCcCC
Confidence 4677889999 99988754556789999997643
No 93
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=62.36 E-value=2.2 Score=37.19 Aligned_cols=13 Identities=23% Similarity=0.619 Sum_probs=9.4
Q ss_pred ceeecCCCCceee
Q 026283 197 QIIRCAGCGNIVW 209 (240)
Q Consensus 197 t~~~CpnCGe~l~ 209 (240)
...+|++||-+-.
T Consensus 52 ~~~~C~~Cg~v~~ 64 (416)
T 4e2x_A 52 AVGRCDSCEMVQL 64 (416)
T ss_dssp EEEEETTTCCEEE
T ss_pred eEEECCCCCceee
Confidence 4578999996543
No 94
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=62.19 E-value=2.1 Score=38.02 Aligned_cols=28 Identities=32% Similarity=0.837 Sum_probs=20.6
Q ss_pred CCCCCCCcccccc-------ccceeecCCCCceee
Q 026283 182 GACPACKREFIGS-------KSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~-------nnt~~~CpnCGe~l~ 209 (240)
..|..|+.++..- ....-.||.||.+|.
T Consensus 140 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 174 (285)
T 3glr_A 140 ATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVK 174 (285)
T ss_dssp EEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCBEE
T ss_pred EEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCccC
Confidence 4799999887542 234578999998765
No 95
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=61.86 E-value=2.5 Score=36.11 Aligned_cols=29 Identities=24% Similarity=0.661 Sum_probs=20.0
Q ss_pred cCCCCCCCccccc---ccc-ceeecCCCCceee
Q 026283 181 KGACPACKREFIG---SKS-QIIRCAGCGNIVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG---~nn-t~~~CpnCGe~l~ 209 (240)
...|..|++.+.- +.. ..-.||.||.+|.
T Consensus 121 ~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~lr 153 (249)
T 1m2k_A 121 VVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLR 153 (249)
T ss_dssp EEEESSSSCEEECSSCCCSSSCCBCSSSSSBEE
T ss_pred eeEeCCCCCcccchhhccCCCCCCCCCCCCCcC
Confidence 3469999987532 112 2579999998875
No 96
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=61.55 E-value=5.7 Score=25.55 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.4
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-.-|+..|-.+|..|+-.+
T Consensus 12 t~C~~C~~~l~g~~~qg~~C~~C~~~~ 38 (50)
T 1ptq_A 12 TFCDHCGSLLWGLVKQGLKCEDCGMNV 38 (50)
T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CCcCCCCceeeccCCccCEeCCCCCeE
Confidence 458899999999999999999998654
No 97
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.41 E-value=1.3 Score=31.25 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=22.8
Q ss_pred CCCCCCCcccc---ccccceeecCCCCceeeeeCCC
Q 026283 182 GACPACKREFI---GSKSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 182 g~CPvC~~eFt---G~nnt~~~CpnCGe~l~v~~g~ 214 (240)
-.||-|+.+|. .|++-+. .-||+.|.++++.
T Consensus 13 ~~CPrCn~~f~~~~sLr~Hmk--ycCp~~v~~~~~~ 46 (49)
T 2e72_A 13 KICPRCNAQFRVTEALRGHMC--YCCPEMVEYQSGP 46 (49)
T ss_dssp CCCTTTCCCCSSHHHHHHHHH--HHCTTTCCCCCSC
T ss_pred eeCCcccccccchHHHHhhhh--hcCcchhhhhccC
Confidence 47999999987 4555554 5599999877763
No 98
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=61.11 E-value=3 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=21.2
Q ss_pred CCCCCCCccc-------cccccceeecCCCC
Q 026283 182 GACPACKREF-------IGSKSQIIRCAGCG 205 (240)
Q Consensus 182 g~CPvC~~eF-------tG~nnt~~~CpnCG 205 (240)
-+||.|++.| ..||+..--||.|.
T Consensus 250 ~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~ 280 (916)
T 3pih_A 250 LMCPVCGIGFPEITPKLFSFNSPYGACPNCH 280 (916)
T ss_dssp CBCTTTCCCCCCCSGGGGCTTSTTTBCTTTT
T ss_pred ccCcccCCccCCCCHhhcCCCCCCCcCCeee
Confidence 4799999875 88999999999994
No 99
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=61.10 E-value=4.2 Score=24.88 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=19.7
Q ss_pred CCCCCCccccccc-----------cceeecCCCCceee
Q 026283 183 ACPACKREFIGSK-----------SQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~eFtG~n-----------nt~~~CpnCGe~l~ 209 (240)
.|+.|++.|.-.. .....|+-||....
T Consensus 6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp BCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred cCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 6999999986532 34578999997643
No 100
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=60.32 E-value=6 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=19.6
Q ss_pred CCCCCCcccccc-----------ccceeecCCCCceeee
Q 026283 183 ACPACKREFIGS-----------KSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 183 ~CPvC~~eFtG~-----------nnt~~~CpnCGe~l~v 210 (240)
.|+.|++.|.-. ......|+-||.....
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 599999988642 2345789999876543
No 101
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=59.98 E-value=3.5 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=20.4
Q ss_pred hhhcCCCCCCCcc--ccccccceeecCCCCcee
Q 026283 178 FVIKGACPACKRE--FIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 178 nLIeg~CPvC~~e--FtG~nnt~~~CpnCGe~l 208 (240)
.+-.+.||+|+-. |.=++..-..|-+||.-.
T Consensus 11 ~~~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~~ 43 (255)
T 1nui_A 11 FLYHIPCDNCGSSDGNSLFSDGHTFCYVCEKWT 43 (255)
T ss_dssp EEEEECCSSSCCSSCEEEETTSCEEETTTCCEE
T ss_pred eecCCcCCCCCCCCCceEeCCCCeecccCCCcC
Confidence 3456899999773 221233248999999753
No 102
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=59.87 E-value=1.1 Score=43.84 Aligned_cols=40 Identities=28% Similarity=0.633 Sum_probs=29.2
Q ss_pred cCCCCCCCcccccccc-ceeecCC---CCceeeeeCCCcccCCC
Q 026283 181 KGACPACKREFIGSKS-QIIRCAG---CGNIVWQPEGDFFSRNG 220 (240)
Q Consensus 181 eg~CPvC~~eFtG~nn-t~~~Cpn---CGe~l~v~~g~F~s~~g 220 (240)
-..||+|+.+..=..+ ...+|+| |-..+...=-||+|+.+
T Consensus 405 P~~CP~Cgs~~~~~~~~~~~rC~n~~~Cpaq~~~~l~hf~sr~a 448 (586)
T 4glx_A 405 PTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRA 448 (586)
T ss_dssp CSBCTTTCCBEECCTTCSCCEESCGGGCHHHHHHHHHHHHSTTT
T ss_pred CCcCCCCCCchhhhhcccccEeCCCcCcHHHHHhHHHhhhcccc
Confidence 4579999998765544 4678987 98877776678866443
No 103
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=59.87 E-value=2.8 Score=35.91 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=18.4
Q ss_pred CCCCCCC--ccccccccc--------eeecCCCCcee
Q 026283 182 GACPACK--REFIGSKSQ--------IIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~--~eFtG~nnt--------~~~CpnCGe~l 208 (240)
-.||.|+ ++|.|+... -.+||+|+..+
T Consensus 23 l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 23 LSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp EECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred EECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence 3699996 455666432 46799999865
No 104
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=59.85 E-value=2.4 Score=33.15 Aligned_cols=14 Identities=43% Similarity=0.978 Sum_probs=11.9
Q ss_pred CCCCCCCccccccc
Q 026283 182 GACPACKREFIGSK 195 (240)
Q Consensus 182 g~CPvC~~eFtG~n 195 (240)
-.||+||-||-|-+
T Consensus 52 FkCP~CgEEFyG~~ 65 (95)
T 2k5c_A 52 FKCPVCGEEFYGKT 65 (95)
T ss_dssp EECTTTCCEEETTS
T ss_pred hcCCCccHHHhccc
Confidence 36999999999865
No 105
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=59.70 E-value=2.5 Score=32.22 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=16.5
Q ss_pred cCCCCCCCccccccccceeecCCCCce
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
+-+|-.|++=-+. -+|||||..
T Consensus 23 ~rAC~~C~~v~~~-----d~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSE-----DRCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESS-----SSCTTTCCC
T ss_pred HHHHhhCCCccCC-----CCCCCCCCC
Confidence 4579999987543 379999974
No 106
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=59.49 E-value=3.8 Score=31.42 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=22.6
Q ss_pred CCCCCCCccccccc------cceeecCCCCceeeeeC
Q 026283 182 GACPACKREFIGSK------SQIIRCAGCGNIVWQPE 212 (240)
Q Consensus 182 g~CPvC~~eFtG~n------nt~~~CpnCGe~l~v~~ 212 (240)
-.|| ||-.|.=-. ....+||+|--.++|--
T Consensus 24 ypCr-CGd~F~IteedLe~ge~iv~C~sCSL~IkV~y 59 (89)
T 2jr7_A 24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLIIKVIY 59 (89)
T ss_dssp EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEEEEEC
T ss_pred EcCC-CCCEEEECHHHHhCCCEEEECCCCccEEEEEE
Confidence 4699 998886431 24799999999988853
No 107
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=58.70 E-value=3.4 Score=36.18 Aligned_cols=32 Identities=16% Similarity=0.461 Sum_probs=19.1
Q ss_pred HHhhhhhcC----CCCCCCcccccc---ccceeecCCCC
Q 026283 174 VANNFVIKG----ACPACKREFIGS---KSQIIRCAGCG 205 (240)
Q Consensus 174 WlkRnLIeg----~CPvC~~eFtG~---nnt~~~CpnCG 205 (240)
+-+...|.+ .||+||....=. ..+-..||+|+
T Consensus 234 ~~~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 234 FQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp ---CCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred ccceEEEeCCCcCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 334445553 599999875432 24556799997
No 108
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=58.23 E-value=4.3 Score=34.24 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=21.3
Q ss_pred hhcCCCCCCCccccccccceeecCCCCce
Q 026283 179 VIKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
+|...|+. +....=..-+..+||+||..
T Consensus 167 Vv~A~c~~-g~~m~~~~~~~m~cp~cg~~ 194 (209)
T 2nn6_I 167 VVVAHSES-GIQMVPISWCEMQCPKTHTK 194 (209)
T ss_dssp ECCCBCSS-SCBCEEEETTEEECTTTTCC
T ss_pred EEEEEcCC-CCEEEEccCCEEECCCCCCE
Confidence 46678888 66666555578999999964
No 109
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=57.60 E-value=6.7 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCCCCCccccc-------cccceeecCCCCceeeee
Q 026283 182 GACPACKREFIG-------SKSQIIRCAGCGNIVWQP 211 (240)
Q Consensus 182 g~CPvC~~eFtG-------~nnt~~~CpnCGe~l~v~ 211 (240)
..||+|+..+.. ++.....|+-|.+.+..+
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~ 85 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEI 85 (133)
T ss_dssp SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHH
T ss_pred CCCCCCCCcCccccccccccCCCCCCCCCCCCccccc
Confidence 499999998874 356778899999876543
No 110
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=56.80 E-value=5.9 Score=28.78 Aligned_cols=24 Identities=25% Similarity=0.625 Sum_probs=15.1
Q ss_pred CCCCCccccccc-cceeecCCCCce
Q 026283 184 CPACKREFIGSK-SQIIRCAGCGNI 207 (240)
Q Consensus 184 CPvC~~eFtG~n-nt~~~CpnCGe~ 207 (240)
||.|++-+..-. +...+||.||..
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~ 52 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQT 52 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCE
T ss_pred CcCCCchheecCCCCceEeCCCCCc
Confidence 888887654322 344678877754
No 111
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=56.78 E-value=3.3 Score=29.53 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=14.0
Q ss_pred CCCCCCccccccccceeecCCCCce
Q 026283 183 ACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
+|-.|++=-+. ..|||||..
T Consensus 3 AC~~C~~v~~~-----~~CpnC~~~ 22 (59)
T 3lpe_B 3 ACLKCKYLTND-----EICPICHSP 22 (59)
T ss_dssp EETTTCBEESS-----SBCTTTCCB
T ss_pred ccccCCcccCC-----CCCCCCCCC
Confidence 58888876432 279999973
No 112
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=56.47 E-value=7.7 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=19.4
Q ss_pred CCCCCCcccccc-----------ccceeecCCCCceee
Q 026283 183 ACPACKREFIGS-----------KSQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~eFtG~-----------nnt~~~CpnCGe~l~ 209 (240)
.|+.|++.|.-. ......|+-||....
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 699999988642 123578999998654
No 113
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=55.79 E-value=2.6 Score=35.70 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=13.3
Q ss_pred CCCCCCCccccc---c-ccceeecCCCCceee
Q 026283 182 GACPACKREFIG---S-KSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG---~-nnt~~~CpnCGe~l~ 209 (240)
..|..|++.+.- + ....+.|++||.+|.
T Consensus 114 ~~C~~C~~~~~~~~~~~~~~~p~c~~Cgg~lr 145 (235)
T 1s5p_A 114 VRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLR 145 (235)
T ss_dssp EEETTTCCEEECCSCCCSSCCC-------CEE
T ss_pred EEeCCCCCcccchhhccCCCCCCCCCCCCeec
Confidence 459999976542 1 235789999998764
No 114
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=55.64 E-value=5.5 Score=31.24 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=17.7
Q ss_pred CCCCCCccccc-----cccceeecCCCC
Q 026283 183 ACPACKREFIG-----SKSQIIRCAGCG 205 (240)
Q Consensus 183 ~CPvC~~eFtG-----~nnt~~~CpnCG 205 (240)
-||.||.+..- -....-.|+.||
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cCchhCCccccccccCCCCcceECCCCC
Confidence 59999999863 334566899998
No 115
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=54.95 E-value=4.1 Score=35.16 Aligned_cols=25 Identities=24% Similarity=0.624 Sum_probs=16.5
Q ss_pred CCCCCCcccc-----ccccceeecCCCCce
Q 026283 183 ACPACKREFI-----GSKSQIIRCAGCGNI 207 (240)
Q Consensus 183 ~CPvC~~eFt-----G~nnt~~~CpnCGe~ 207 (240)
.|+.|++++. |--.....||+|++.
T Consensus 136 ~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 136 ECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 7999997631 111234679999974
No 116
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=54.89 E-value=8.1 Score=26.49 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.4
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-.-|+..|-.+|..|+-.+
T Consensus 21 t~C~~C~~~l~Gl~~qg~~C~~C~~~~ 47 (65)
T 3uej_A 21 TFCDHCGSLLWGLVKQGLKCEDCGMNV 47 (65)
T ss_dssp CBCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CcccccChhhhccCceeeECCCCCCeE
Confidence 468899999999999999999998554
No 117
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.82 E-value=4 Score=26.98 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.6
Q ss_pred eeecCCCCceee
Q 026283 198 IIRCAGCGNIVW 209 (240)
Q Consensus 198 ~~~CpnCGe~l~ 209 (240)
..+||-|+.++.
T Consensus 43 ~~~CP~Cr~~~~ 54 (65)
T 1g25_A 43 AGNCPECGTPLR 54 (65)
T ss_dssp SSSCTTTCCCCS
T ss_pred CCcCCCCCCccc
Confidence 346777776664
No 118
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=53.67 E-value=5.1 Score=27.26 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=9.0
Q ss_pred CCCCCCccccccccce
Q 026283 183 ACPACKREFIGSKSQI 198 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~ 198 (240)
.||.|+++=.-+.+.|
T Consensus 11 ~Cp~Cg~~~a~f~q~Q 26 (50)
T 1tfi_A 11 TCGKCKKKNCTYTQVQ 26 (50)
T ss_dssp CCSSSCSSCEEEEEEC
T ss_pred CCCCCCCCEEEEEEec
Confidence 5666666555544444
No 119
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=53.65 E-value=6.1 Score=29.81 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=22.5
Q ss_pred cCCCCCCCccccccc------cceeecCCCCceeeee
Q 026283 181 KGACPACKREFIGSK------SQIIRCAGCGNIVWQP 211 (240)
Q Consensus 181 eg~CPvC~~eFtG~n------nt~~~CpnCGe~l~v~ 211 (240)
.-.|| ||-.|.=-. ....+||+|--.|+|-
T Consensus 30 ~y~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I~V~ 65 (83)
T 1wge_A 30 FYPCP-CGDNFAITKEDLENGEDVATCPSCSLIIKVI 65 (83)
T ss_dssp EECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEEEEE
T ss_pred EEeCC-CCCEEEECHHHHhCCCEEEECCCCceEEEEE
Confidence 34699 998885431 2479999999998884
No 120
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=53.50 E-value=5.6 Score=33.09 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=12.9
Q ss_pred hhHhHHhhhhhhhh-hchhHHHHHH
Q 026283 104 ISVRWRSFRMDFSR-NWPRYRKQLN 127 (240)
Q Consensus 104 i~rR~R~f~~D~~r-~wP~yrrql~ 127 (240)
-+.++|+...-+.. +=|..++.+.
T Consensus 64 Yk~k~Rsl~~NLKd~~N~~Lr~~vl 88 (178)
T 3po3_S 64 YKARYRIIYSNVISKNNPDLKHKIA 88 (178)
T ss_dssp HHHHHHHHHHHHHSSSCSHHHHHHH
T ss_pred hhhhhhHHHHHcCCCCCHHHHHHHh
Confidence 45566666655552 2266666553
No 121
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.47 E-value=5.1 Score=30.86 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=6.2
Q ss_pred CCCCCCcccccccc
Q 026283 183 ACPACKREFIGSKS 196 (240)
Q Consensus 183 ~CPvC~~eFtG~nn 196 (240)
.||.|++.=.-|.+
T Consensus 74 ~Cp~C~~~~a~~~q 87 (113)
T 3h0g_I 74 ECPRCHQHEAVFYQ 87 (113)
T ss_dssp CCSSSCCSCEEEEC
T ss_pred CCCCCCCceEEEEE
Confidence 35555544333333
No 122
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=53.24 E-value=4.8 Score=39.41 Aligned_cols=25 Identities=36% Similarity=0.853 Sum_probs=16.8
Q ss_pred hhcCCCCCCCcc-ccccccceeecCCCCcee
Q 026283 179 VIKGACPACKRE-FIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 179 LIeg~CPvC~~e-FtG~nnt~~~CpnCGe~l 208 (240)
.|+|.||.|+++ --| .+|-+||..+
T Consensus 138 ~v~gtcP~c~~~~~~G-----d~c~~~G~~l 163 (722)
T 1rqg_A 138 FVIGTCPYCGAEDQKG-----DQCEVCGRPL 163 (722)
T ss_dssp GCCSBCSSSCCSCCCT-----TTCSSSCCCC
T ss_pred hcccccCccCCccCCc-----chhhhccccc
Confidence 467899999985 222 3467777654
No 123
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=53.24 E-value=3.6 Score=35.22 Aligned_cols=29 Identities=38% Similarity=0.675 Sum_probs=19.7
Q ss_pred cCCCCCCCcccccc-------ccceeecCCCCc-eee
Q 026283 181 KGACPACKREFIGS-------KSQIIRCAGCGN-IVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG~-------nnt~~~CpnCGe-~l~ 209 (240)
+..|..|++++.-- ....-.||.||. +|.
T Consensus 123 ~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~lr 159 (253)
T 1ma3_A 123 KLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVK 159 (253)
T ss_dssp EEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEE
T ss_pred eeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCCcccc
Confidence 34699999875321 123579999999 664
No 124
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.81 E-value=12 Score=25.10 Aligned_cols=40 Identities=15% Similarity=0.471 Sum_probs=26.5
Q ss_pred hhcCCCCCCCccccccc------c-----ceeecCCCCceeeeeCCCcccCCC
Q 026283 179 VIKGACPACKREFIGSK------S-----QIIRCAGCGNIVWQPEGDFFSRNG 220 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~n------n-----t~~~CpnCGe~l~v~~g~F~s~~g 220 (240)
+-...|+.|+....+-. + .=.+|..|+.+| .+..|+..+|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L--~~~~~~~~~~ 53 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL--RGQHFYAVER 53 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC--TTSCEEESSS
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcC--CcCcCEeeCC
Confidence 44578999998777521 1 116899999999 3555655433
No 125
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=52.75 E-value=5.9 Score=31.88 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=20.1
Q ss_pred hcCCCCCCCc-cccccccceeecCCCCcee
Q 026283 180 IKGACPACKR-EFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 180 Ieg~CPvC~~-eFtG~nnt~~~CpnCGe~l 208 (240)
.+-.||.|+. .+.-.-..+-+|+.||..+
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEE
Confidence 3567999998 3333334567899999854
No 126
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=52.14 E-value=5.7 Score=29.99 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=21.7
Q ss_pred CCCCCCCcccccc-----c-cceeecCCCCceeeee
Q 026283 182 GACPACKREFIGS-----K-SQIIRCAGCGNIVWQP 211 (240)
Q Consensus 182 g~CPvC~~eFtG~-----n-nt~~~CpnCGe~l~v~ 211 (240)
-.|| ||-.|.=- + ....+||+|--.|+|-
T Consensus 24 ypCr-CGd~F~it~edL~~ge~iv~C~sCSL~I~V~ 58 (83)
T 1yop_A 24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMIDVV 58 (83)
T ss_dssp EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEEECB
T ss_pred EeCC-CCCeEEECHHHHhCCCEEEECCCCccEEEEE
Confidence 4599 99777533 1 3589999999988884
No 127
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=51.63 E-value=5.2 Score=20.71 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=8.4
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 1ard_A 4 VCEVCTRAFAR 14 (29)
T ss_dssp BCTTTCCBCSS
T ss_pred ECCCCCcccCC
Confidence 58888888763
No 128
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.53 E-value=10 Score=24.83 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=14.4
Q ss_pred cccceeecCCCCceeeeeCCC
Q 026283 194 SKSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 194 ~nnt~~~CpnCGe~l~v~~g~ 214 (240)
+......||-|...+.++.+.
T Consensus 33 i~~~~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 33 LEASGMQCPICQAPWPLGADT 53 (56)
T ss_dssp CSSSSSSCSSCCSSSSCCSSC
T ss_pred HccCCCCCCcCCcEeecCCcC
Confidence 333456788888888776654
No 129
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=50.94 E-value=9.6 Score=26.18 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=23.3
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-.-|+..|-.+|..|+-.+
T Consensus 24 t~C~~C~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 24 TFCEHCGTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp CBCSSSCCBCCCSSSCSEEESSSCCEE
T ss_pred cCchhcChhheecCCcccccCCCCCcc
Confidence 458899999999999999999998654
No 130
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=50.36 E-value=8 Score=36.22 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.4
Q ss_pred CCCCCCCccccccccceeecCCCCceee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
-.|-+|+..+-|+..|-.+|..||-.+-
T Consensus 530 t~C~~C~~~l~gl~~qg~~C~~C~~~vH 557 (587)
T 3ky9_A 530 TSCKACQMLLRGTFYQGYRCHRCRASAH 557 (587)
T ss_dssp CBCTTTCSBCCSSSCCEEEETTTCCEEC
T ss_pred cccccccccccccccCCcCCCCCCCccc
Confidence 4677999999999999999999997663
No 131
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.13 E-value=10 Score=27.24 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=23.5
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-.-|+..|-.+|..|+-.+
T Consensus 29 t~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 29 TFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp CCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred cChhhcChhhccccccccccCCcCCee
Confidence 469999999999999999999998554
No 132
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=50.08 E-value=4.6 Score=36.93 Aligned_cols=29 Identities=21% Similarity=0.624 Sum_probs=19.8
Q ss_pred cCCCCCCCccccc------cc----cceeecCCCCceee
Q 026283 181 KGACPACKREFIG------SK----SQIIRCAGCGNIVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG------~n----nt~~~CpnCGe~l~ 209 (240)
...|..|++.+.. +. ...-.||.||.+|.
T Consensus 144 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~lr 182 (361)
T 1q14_A 144 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVK 182 (361)
T ss_dssp EEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBEE
T ss_pred ccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCEeC
Confidence 3569999987643 11 12369999998774
No 133
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=50.00 E-value=6.1 Score=27.61 Aligned_cols=13 Identities=8% Similarity=-0.010 Sum_probs=10.4
Q ss_pred cceeecCCCCcee
Q 026283 196 SQIIRCAGCGNIV 208 (240)
Q Consensus 196 nt~~~CpnCGe~l 208 (240)
.+...||+|||..
T Consensus 25 p~l~~c~~cGe~~ 37 (56)
T 3r8s_0 25 TSLSVDKTSGEKH 37 (56)
T ss_dssp CCEEECTTTCCEE
T ss_pred CceeECCCCCCee
Confidence 4578999999964
No 134
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=49.83 E-value=9.5 Score=28.30 Aligned_cols=34 Identities=18% Similarity=0.525 Sum_probs=21.6
Q ss_pred hcCCCCCCCccccccccc-eeecCCCCceeeeeCCCc
Q 026283 180 IKGACPACKREFIGSKSQ-IIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt-~~~CpnCGe~l~v~~g~F 215 (240)
.+-.||.|+..-+-=..+ +=.|..||+. +..|-+
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~--~AGGAy 59 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKT--VAGGAY 59 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCC--CCCSSS
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCE--EeCCcc
Confidence 467899999764333222 2489999974 344444
No 135
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.80 E-value=6.5 Score=26.99 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=19.5
Q ss_pred CCCCCCccccccc---------cceeecCCCCceee
Q 026283 183 ACPACKREFIGSK---------SQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~eFtG~n---------nt~~~CpnCGe~l~ 209 (240)
.|+.|+..|...+ .....|++||..+.
T Consensus 19 ~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 19 VCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVL 54 (75)
T ss_dssp ECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred CCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCc
Confidence 5889999886333 24578999999754
No 136
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=49.60 E-value=6.9 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=14.4
Q ss_pred CCCCCCcccccc-----------ccceeecCCCCceee
Q 026283 183 ACPACKREFIGS-----------KSQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~eFtG~-----------nnt~~~CpnCGe~l~ 209 (240)
.|+.|++.|.-. ......|+-||....
T Consensus 38 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 38 KCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75 (96)
T ss_dssp ECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES
T ss_pred eCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 466666666432 123356666665543
No 137
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=49.44 E-value=10 Score=27.10 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-.-|+..|-.+|..|+-.+
T Consensus 35 t~C~~C~~~lwGl~kqG~~C~~C~~~~ 61 (77)
T 2enn_A 35 TFCSVCHEFVWGLNKQGYQCRQCNAAI 61 (77)
T ss_dssp EECSSSCCEECCTTCCEEECSSSCCEE
T ss_pred cCccccChhhccccccccCcCCCCCcC
Confidence 358899999999999999999998655
No 138
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=49.09 E-value=9.1 Score=28.93 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=23.2
Q ss_pred CCCCCCCcc-ccccc------cceeecCCCCceeeeeCC
Q 026283 182 GACPACKRE-FIGSK------SQIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 182 g~CPvC~~e-FtG~n------nt~~~CpnCGe~l~v~~g 213 (240)
=+||.|+++ .+..+ --.+.|-+||+.-+.+=.
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~ 62 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPIT 62 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECC
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccC
Confidence 479999999 44432 356899999998766433
No 139
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=48.78 E-value=6.3 Score=21.99 Aligned_cols=11 Identities=45% Similarity=1.201 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 13 ~C~~C~k~f~~ 23 (37)
T 1p7a_A 13 QCPDCDRSFSR 23 (37)
T ss_dssp CCTTTCCCBSS
T ss_pred cCCCCCcccCc
Confidence 69999988863
No 140
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=48.65 E-value=6.7 Score=33.97 Aligned_cols=23 Identities=22% Similarity=0.641 Sum_probs=14.4
Q ss_pred CCCCCCcccccc---ccceeecCCCC
Q 026283 183 ACPACKREFIGS---KSQIIRCAGCG 205 (240)
Q Consensus 183 ~CPvC~~eFtG~---nnt~~~CpnCG 205 (240)
.||+||....=. ..+-..||+|+
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCEeEEEEECCCCeEECCCCC
Confidence 388888754322 23445788886
No 141
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=48.20 E-value=8.4 Score=30.00 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=24.2
Q ss_pred hcCCCCCCCcccccccccee-----------ecCCCCceeeeeCC
Q 026283 180 IKGACPACKREFIGSKSQII-----------RCAGCGNIVWQPEG 213 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt~~-----------~CpnCGe~l~v~~g 213 (240)
++-.||.|+++=.-|.+.|+ .|.+||.. |.+++
T Consensus 71 t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~-w~~nn 114 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI-FTSDQ 114 (122)
T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE-EECCT
T ss_pred cCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE-eccCC
Confidence 45679999998777766663 79999986 44444
No 142
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=48.17 E-value=6.3 Score=35.11 Aligned_cols=26 Identities=27% Similarity=0.568 Sum_probs=20.9
Q ss_pred CCCCCCCccccccccce-----------eecCCCCce
Q 026283 182 GACPACKREFIGSKSQI-----------IRCAGCGNI 207 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~-----------~~CpnCGe~ 207 (240)
-.||.|++.=..|.+.| ..|.+||..
T Consensus 269 ~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred ccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 37999999888887766 479999874
No 143
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=47.59 E-value=7.1 Score=19.96 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=8.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|+..|.-
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 2m0e_A 4 KCPHCDKKFNQ 14 (29)
T ss_dssp CCSSCCCCCCT
T ss_pred cCCCCCcccCC
Confidence 58888887753
No 144
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.38 E-value=8.6 Score=29.23 Aligned_cols=34 Identities=32% Similarity=0.726 Sum_probs=22.4
Q ss_pred hcCCCCCCCcccccccc-ceeecCCCCceeeeeCCCc
Q 026283 180 IKGACPACKREFIGSKS-QIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nn-t~~~CpnCGe~l~v~~g~F 215 (240)
.+-.||.|+..-+-=.. .+=.|..||+. +..|-+
T Consensus 34 ~ky~CpfCGk~~vkR~a~GIW~C~kCg~~--~AGGAy 68 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTGIWQCQKCGAT--FAGGAY 68 (83)
T ss_dssp SCBCCSSSCSSCEEEEETTEEEETTTCCE--EECCSS
T ss_pred cccCCCCCCCceeEecCcCeEEcCCCCCE--EeCCcc
Confidence 36789999987332222 23489999996 455554
No 145
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=47.33 E-value=9.7 Score=29.50 Aligned_cols=34 Identities=18% Similarity=0.497 Sum_probs=22.3
Q ss_pred hcCCCCCCCccccccccc-eeecCCCCceeeeeCCCc
Q 026283 180 IKGACPACKREFIGSKSQ-IIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt-~~~CpnCGe~l~v~~g~F 215 (240)
.+-.||.|+..-+-=..+ +-.|..||+ ++..|-+
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~C~~--~~AGGAy 69 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGIWTCSCCKK--TVAGGAY 69 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTEEECTTTCC--EEECCSS
T ss_pred cCCcCCCCCCceeeecccceEEcCCCCC--EEeCCcc
Confidence 467899999764322222 348999999 4556655
No 146
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=46.68 E-value=7.8 Score=33.76 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=13.5
Q ss_pred CCCCCcccccc---ccceeecCCCCc
Q 026283 184 CPACKREFIGS---KSQIIRCAGCGN 206 (240)
Q Consensus 184 CPvC~~eFtG~---nnt~~~CpnCGe 206 (240)
||+||....=. ..+-..||+|+.
T Consensus 238 C~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 238 CPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp CTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCEeeEEEECCCceEECCCCCC
Confidence 88887654322 234456888864
No 147
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=46.65 E-value=7.3 Score=19.92 Aligned_cols=11 Identities=36% Similarity=1.065 Sum_probs=8.2
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T 1znf_A 3 KCGLCERSFVE 13 (27)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCCCCCcCCC
Confidence 58888888754
No 148
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=46.43 E-value=13 Score=25.79 Aligned_cols=9 Identities=33% Similarity=1.254 Sum_probs=5.3
Q ss_pred CCCCCCccc
Q 026283 183 ACPACKREF 191 (240)
Q Consensus 183 ~CPvC~~eF 191 (240)
.|+.|++.|
T Consensus 37 ~C~~C~~~f 45 (124)
T 2dlq_A 37 ECPKCGKCY 45 (124)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCchh
Confidence 466666555
No 149
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.35 E-value=7.1 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.7
Q ss_pred cCCCCCCCccccccccceeecCCCCc
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGN 206 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe 206 (240)
---|.-||.. .|+-|.-+|.+||-
T Consensus 17 H~lCrRCG~~--syH~qK~~Ca~CGy 40 (62)
T 3j21_e 17 HIRCRRCGRV--SYNVKKGYCAACGF 40 (62)
T ss_dssp CCBCSSSCSB--CEETTTTEETTTCT
T ss_pred eeeecccCcc--hhccccccccccCC
Confidence 4579999987 78999999999996
No 150
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.21 E-value=8.7 Score=24.97 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=20.7
Q ss_pred CCCCCCCcccccc-----------ccceeecCCCCceeee
Q 026283 182 GACPACKREFIGS-----------KSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 182 g~CPvC~~eFtG~-----------nnt~~~CpnCGe~l~v 210 (240)
-.|+.|++.|.-. ......|+-||.....
T Consensus 18 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp BCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred eECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 4799999999642 2234789999986543
No 151
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=46.13 E-value=5.2 Score=25.24 Aligned_cols=10 Identities=30% Similarity=0.993 Sum_probs=7.1
Q ss_pred CCCCCCCccc
Q 026283 182 GACPACKREF 191 (240)
Q Consensus 182 g~CPvC~~eF 191 (240)
-+||||+.-.
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 4799998643
No 152
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=45.78 E-value=7.5 Score=33.82 Aligned_cols=27 Identities=19% Similarity=0.643 Sum_probs=16.4
Q ss_pred hhcCC----CCCCCcccccc---ccceeecCCCC
Q 026283 179 VIKGA----CPACKREFIGS---KSQIIRCAGCG 205 (240)
Q Consensus 179 LIeg~----CPvC~~eFtG~---nnt~~~CpnCG 205 (240)
.|.+. ||+||....=. ..+-..||+|+
T Consensus 234 ~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 234 QVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SSTTCTTSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred EEcccCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 45544 88888764322 23445788886
No 153
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.68 E-value=14 Score=26.75 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-..|+..|-.+|..|+-.+
T Consensus 29 t~C~~C~~~l~Gl~kqG~~C~~C~~~~ 55 (85)
T 2eli_A 29 TFCDHCGSLLYGLIHQGMKCDTCDMNV 55 (85)
T ss_dssp CBCSSSCCBCCCSSSCEEECSSSCCEE
T ss_pred cCCcccCccccccccCCCcCCCcCCcc
Confidence 458899999999999999999998654
No 154
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=51.31 E-value=4.4 Score=20.92 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=7.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 57888877753
No 155
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=45.20 E-value=7.5 Score=20.31 Aligned_cols=11 Identities=45% Similarity=1.014 Sum_probs=8.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1paa_A 4 ACGLCNRAFTR 14 (30)
T ss_dssp BCTTTCCBCSS
T ss_pred CCcccCcccCC
Confidence 58888887753
No 156
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=45.18 E-value=8.9 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.676 Sum_probs=15.1
Q ss_pred CCCCCCccccccc-----------cceeecCCCCcee
Q 026283 183 ACPACKREFIGSK-----------SQIIRCAGCGNIV 208 (240)
Q Consensus 183 ~CPvC~~eFtG~n-----------nt~~~CpnCGe~l 208 (240)
.|+.|++.|.-.. .....|+.||...
T Consensus 31 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 67 (82)
T 2kmk_A 31 PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEE
T ss_pred eCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhh
Confidence 5777777765421 2346677776543
No 157
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=45.13 E-value=9.9 Score=29.41 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=22.4
Q ss_pred hcCCCCCCCccccccccc-eeecCCCCceeeeeCCCc
Q 026283 180 IKGACPACKREFIGSKSQ-IIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt-~~~CpnCGe~l~v~~g~F 215 (240)
.+-.||.|+..-+-=..+ +=.|..||+ ++..|-+
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~Cg~--~~AGGAy 69 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKRKAVGIWGCKDCGK--VKAGGAY 69 (92)
T ss_dssp SCBCCTTTCSSCBEEEETTEEECSSSCC--EEECCSS
T ss_pred ccccCcccCCCeeEecCcceEEcCCCCC--EEeCCcc
Confidence 456899999874332222 348999999 4556655
No 158
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=44.94 E-value=8 Score=33.65 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=17.3
Q ss_pred hhcCC----CCCCCcccccc---ccceeecCCCCc
Q 026283 179 VIKGA----CPACKREFIGS---KSQIIRCAGCGN 206 (240)
Q Consensus 179 LIeg~----CPvC~~eFtG~---nnt~~~CpnCGe 206 (240)
.|.+. ||+||....=. ..+-..||+|+.
T Consensus 236 ~VygR~G~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 236 QVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SSTTCTTSBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred EEccCCCCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 46644 88888765322 234457888874
No 159
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.86 E-value=8.5 Score=26.77 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=25.0
Q ss_pred hhhhhcCCCCCCCccccccccceeecCCCCceeeeeC
Q 026283 176 NNFVIKGACPACKREFIGSKSQIIRCAGCGNIVWQPE 212 (240)
Q Consensus 176 kRnLIeg~CPvC~~eFtG~nnt~~~CpnCGe~l~v~~ 212 (240)
++..-.-.||.|+.. .-.....|..||....-+.
T Consensus 9 ~r~~~k~iCpkC~a~---~~~gaw~CrKCG~~~lr~k 42 (51)
T 3j21_g 9 ARIFKKYVCLRCGAT---NPWGAKKCRKCGYKRLRPK 42 (51)
T ss_dssp HHSSSEEECTTTCCE---ECTTCSSCSSSSSCCCEEE
T ss_pred HHHhCCccCCCCCCc---CCCCceecCCCCCcccccc
Confidence 455666789999998 4466788999998744443
No 160
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=44.69 E-value=8.6 Score=19.79 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=8.4
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1klr_A 4 QCQYCEFRSAD 14 (30)
T ss_dssp CCSSSSCCCSC
T ss_pred cCCCCCCccCC
Confidence 68888888764
No 161
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.67 E-value=13 Score=24.15 Aligned_cols=12 Identities=25% Similarity=1.016 Sum_probs=7.7
Q ss_pred cCCCCCCCcccc
Q 026283 181 KGACPACKREFI 192 (240)
Q Consensus 181 eg~CPvC~~eFt 192 (240)
...||+|..++.
T Consensus 56 ~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 56 ANTCPTCRKKIN 67 (69)
T ss_dssp CSSCTTTCCCCC
T ss_pred CCCCCCCCCccC
Confidence 457777776653
No 162
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.38 E-value=13 Score=28.50 Aligned_cols=31 Identities=13% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCCCCCcccccc-----ccceeecCCCCceeeeeCC
Q 026283 183 ACPACKREFIGS-----KSQIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 183 ~CPvC~~eFtG~-----nnt~~~CpnCGe~l~v~~g 213 (240)
-||.|++-+.=- +.....|++||-.-.+.+.
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~ 41 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATS 41 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCS
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCC
Confidence 499999877433 3347899999988776654
No 163
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=44.28 E-value=6.8 Score=28.18 Aligned_cols=24 Identities=21% Similarity=0.625 Sum_probs=19.6
Q ss_pred cCCCCCCCccccccccceeecCCCCc
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGN 206 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe 206 (240)
.-.|.-||.. .|+.|.-+|.+||-
T Consensus 17 H~~CrRCG~~--syH~qK~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRRCGEK--SYHTKKKVCSSCGF 40 (57)
T ss_dssp EEECTTTCSE--EEETTTTEETTTCT
T ss_pred cccccccCCh--hhhccccccccccC
Confidence 3468889887 78888999999985
No 164
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=44.06 E-value=5.9 Score=31.59 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=25.0
Q ss_pred HHHhhhhhcCCCCCCCccccccccceeecCCCCce
Q 026283 173 TVANNFVIKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 173 wWlkRnLIeg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
-..+..|+-..|+.|+.-+.-= ...||+||..
T Consensus 39 ~l~~grL~~~rC~~CG~~~~PP---r~~Cp~C~s~ 70 (145)
T 3irb_A 39 GLKQNKIIGSKCSKCGRIFVPA---RSYCEHCFVK 70 (145)
T ss_dssp HHHTTCCEEEECTTTCCEEESC---CSEETTTTEE
T ss_pred HHHcCeEEEEEeCCCCcEEcCc---hhhCcCCCCC
Confidence 3456788889999999887654 4569999965
No 165
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=44.06 E-value=4.5 Score=40.44 Aligned_cols=32 Identities=22% Similarity=0.492 Sum_probs=25.9
Q ss_pred CCCCCCccccc-----cccceeecCCCCceeeeeCCC
Q 026283 183 ACPACKREFIG-----SKSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 183 ~CPvC~~eFtG-----~nnt~~~CpnCGe~l~v~~g~ 214 (240)
-||.|..|+.- |--|.+-||.||=.|+..+.+
T Consensus 158 mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l~l~~~~ 194 (772)
T 4g9i_A 158 MCDFCRSEYEDPLNRRYHAEPTACPVCGPSYRLYTSD 194 (772)
T ss_dssp CCHHHHHHHHCSSSTTTTCTTCCCTTTSCCEEEESSS
T ss_pred CChhHHHHhCCCCCCCCcCCCCCCccCCceEEEEcCC
Confidence 49999999874 455778899999999987654
No 166
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.68 E-value=13 Score=24.96 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=9.9
Q ss_pred eeecCCCCceeee
Q 026283 198 IIRCAGCGNIVWQ 210 (240)
Q Consensus 198 ~~~CpnCGe~l~v 210 (240)
...||-|+..+..
T Consensus 59 ~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 59 ESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCCSSCS
T ss_pred CCcCCCCCCccCH
Confidence 5678888887764
No 167
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=43.28 E-value=12 Score=25.09 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=18.0
Q ss_pred CCCCCCcccccc-------------ccceeecCCCCcee
Q 026283 183 ACPACKREFIGS-------------KSQIIRCAGCGNIV 208 (240)
Q Consensus 183 ~CPvC~~eFtG~-------------nnt~~~CpnCGe~l 208 (240)
.|+.|++.|.-. ......|+.||...
T Consensus 37 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f 75 (95)
T 2yt9_A 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF 75 (95)
T ss_dssp ECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred cCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence 688998888532 12567888888754
No 168
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.21 E-value=14 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=19.4
Q ss_pred CCCCCCcccccc-----------ccceeecCCCCceee
Q 026283 183 ACPACKREFIGS-----------KSQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~eFtG~-----------nnt~~~CpnCGe~l~ 209 (240)
.|+.|++.|.-. ......|+-|+....
T Consensus 16 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp ECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred cCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 699999988642 234578999987654
No 169
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=43.11 E-value=7.3 Score=20.21 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 5 ~C~~C~k~f~~ 15 (28)
T 2kvf_A 5 SCSVCGKRFSL 15 (28)
T ss_dssp ECSSSCCEESC
T ss_pred cCCCCCcccCC
Confidence 59999988864
No 170
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=42.98 E-value=8.2 Score=36.29 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=18.1
Q ss_pred hcCCCCCCCccccc---------ccc---ceeecCCCCce
Q 026283 180 IKGACPACKREFIG---------SKS---QIIRCAGCGNI 207 (240)
Q Consensus 180 Ieg~CPvC~~eFtG---------~nn---t~~~CpnCGe~ 207 (240)
++..||+|+..-+= |+. .-..|++||--
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr 258 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHR 258 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCc
Confidence 56789999976431 111 23579999954
No 171
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=42.90 E-value=8.1 Score=39.96 Aligned_cols=25 Identities=32% Similarity=0.684 Sum_probs=21.3
Q ss_pred cCCCCCCCcc-------ccccccceeecCCCC
Q 026283 181 KGACPACKRE-------FIGSKSQIIRCAGCG 205 (240)
Q Consensus 181 eg~CPvC~~e-------FtG~nnt~~~CpnCG 205 (240)
.-+||.|++. ...||+-.--||.|.
T Consensus 267 ~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~ 298 (972)
T 2r6f_A 267 KHACPYCGFSIGELEPRLFSFNSPFGACPDCD 298 (972)
T ss_dssp SEECTTTCCEEECCCGGGGCSSSTTTBCTTTT
T ss_pred cccCCCCCCcCCCCChhhcCcCCCCCCCCCCc
Confidence 4579999985 578899999999997
No 172
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.88 E-value=13 Score=25.12 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=7.0
Q ss_pred CCCCCCCcccc
Q 026283 182 GACPACKREFI 192 (240)
Q Consensus 182 g~CPvC~~eFt 192 (240)
..||+|..++.
T Consensus 61 ~~CP~Cr~~~~ 71 (75)
T 1x4j_A 61 RTCPICRADSG 71 (75)
T ss_dssp SSCTTTCCCCC
T ss_pred CcCcCcCCcCC
Confidence 46777766654
No 173
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=42.02 E-value=7.9 Score=20.06 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=8.5
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 1rik_A 4 ACPECPKRFMR 14 (29)
T ss_dssp ECSSSSCEESC
T ss_pred cCCCCCchhCC
Confidence 58888888764
No 174
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=41.94 E-value=11 Score=23.79 Aligned_cols=8 Identities=38% Similarity=1.265 Sum_probs=3.7
Q ss_pred CCCCCCcc
Q 026283 183 ACPACKRE 190 (240)
Q Consensus 183 ~CPvC~~e 190 (240)
.||.|..+
T Consensus 45 ~CP~Cr~~ 52 (55)
T 1iym_A 45 TCPLCRLT 52 (55)
T ss_dssp SCSSSCCC
T ss_pred cCcCCCCE
Confidence 44444443
No 175
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=41.88 E-value=24 Score=25.06 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=14.0
Q ss_pred ceeecCCCCceeeeeCCCc
Q 026283 197 QIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 197 t~~~CpnCGe~l~v~~g~F 215 (240)
....||.|.+++...+=.|
T Consensus 49 ~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 49 ENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp SCSBCTTTCCBCSSCSSCC
T ss_pred CCCCCCCCCCccCCCchhh
Confidence 4568999999887655444
No 176
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=41.86 E-value=16 Score=25.23 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.2
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-.-|+..|-.+|..|+-.+
T Consensus 25 t~C~~C~~~l~Gl~~qg~~C~~C~~~~ 51 (66)
T 1y8f_A 25 TYCYECEGLLWGIARQGMRCTECGVKC 51 (66)
T ss_dssp CCCTTTCCCCCSSCCEEEEETTTCCEE
T ss_pred cChhhcChhhcccCcceeEcCCCCCee
Confidence 468899999999999999999998553
No 177
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.70 E-value=10 Score=24.84 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=20.1
Q ss_pred CCCCCCccccccc--------------cceeecCCCCceeee
Q 026283 183 ACPACKREFIGSK--------------SQIIRCAGCGNIVWQ 210 (240)
Q Consensus 183 ~CPvC~~eFtG~n--------------nt~~~CpnCGe~l~v 210 (240)
.|+.|++.|.-.. .....|+.||.....
T Consensus 9 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp ECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred ECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCC
Confidence 5999999885321 346789999987644
No 178
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=41.54 E-value=1.8 Score=34.84 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=17.4
Q ss_pred CCCCCCCccccccccceeecCCCCceeeee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIVWQP 211 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l~v~ 211 (240)
-+|-.|+.=-+-=.=....||||+..|..+
T Consensus 17 rAC~~C~~V~t~~qF~~~gCpnC~~~l~m~ 46 (120)
T 3h7h_A 17 RACLLCSLVKTIDQFEYDGCDNCDAYLQMK 46 (120)
T ss_dssp EEETTTCBEEEHHHHHHHCCTTTHHHHCCT
T ss_pred eeeccCCceechhhccCCCCCCCcchhhcc
Confidence 368888764322100124699999766554
No 179
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=41.28 E-value=12 Score=29.17 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=29.0
Q ss_pred HHhhhhhcCCCCCCCccccccccce---eecCCCCceeeeeCCC
Q 026283 174 VANNFVIKGACPACKREFIGSKSQI---IRCAGCGNIVWQPEGD 214 (240)
Q Consensus 174 WlkRnLIeg~CPvC~~eFtG~nnt~---~~CpnCGe~l~v~~g~ 214 (240)
.++|..--..||.|+..|--..+.. -.|..||+.+....++
T Consensus 120 ~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d 163 (216)
T 3dl0_A 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADD 163 (216)
T ss_dssp HHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTC
T ss_pred HHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCCC
Confidence 4455444557999999987665543 4699999988776554
No 180
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=41.12 E-value=10 Score=21.14 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|+..|.-
T Consensus 4 ~C~~C~k~F~~ 14 (33)
T 1rim_A 4 ACPECPKRFMR 14 (33)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCCCCchhCC
Confidence 68999988864
No 181
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.06 E-value=15 Score=26.40 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=9.1
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
..||+|+++|.-
T Consensus 59 ~~CplCr~~~~~ 70 (80)
T 2d8s_A 59 RCCELCKYEFIM 70 (80)
T ss_dssp SBCSSSCCBCCC
T ss_pred CCCCCCCCeeec
Confidence 478888888753
No 182
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.01 E-value=14 Score=25.10 Aligned_cols=39 Identities=21% Similarity=0.522 Sum_probs=26.1
Q ss_pred hhcCCCCCCCcccccc--------cc-----ceeecCCCCceeeeeCCCcccCC
Q 026283 179 VIKGACPACKREFIGS--------KS-----QIIRCAGCGNIVWQPEGDFFSRN 219 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~--------nn-----t~~~CpnCGe~l~v~~g~F~s~~ 219 (240)
+....|+.|+....++ .+ .=.+|..|+.+|. +..|+..+
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~ 54 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV--GKGFLTQN 54 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS--SSCEEEET
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC--CCceEeEC
Confidence 3457899999988862 11 2258999999886 44554433
No 183
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.00 E-value=12 Score=25.09 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=9.5
Q ss_pred eeecCCCCceeee
Q 026283 198 IIRCAGCGNIVWQ 210 (240)
Q Consensus 198 ~~~CpnCGe~l~v 210 (240)
...||.|+..+..
T Consensus 59 ~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 59 KGNCPVCRVPYPF 71 (85)
T ss_dssp CBCCTTTCCCCCT
T ss_pred CCCCCCCCCcCCH
Confidence 5678888887654
No 184
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=40.87 E-value=10 Score=34.60 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=20.5
Q ss_pred CCCCCCCcccc--ccccceeecCCCCceeee
Q 026283 182 GACPACKREFI--GSKSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 182 g~CPvC~~eFt--G~nnt~~~CpnCGe~l~v 210 (240)
..|+.|++.-+ |+......||.||..+.+
T Consensus 245 ~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~~ 275 (392)
T 3axs_A 245 QYCFNCMNREVVTDLYKFKEKCPHCGSKFHI 275 (392)
T ss_dssp EECTTTCCEEEECCGGGCCSBCTTTCSBCEE
T ss_pred EECCCCCCeEeecCCCCCCCcCCCCCCccce
Confidence 46999997643 443566889999975544
No 185
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.85 E-value=12 Score=25.34 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=9.3
Q ss_pred eecCCCCceeeeeC
Q 026283 199 IRCAGCGNIVWQPE 212 (240)
Q Consensus 199 ~~CpnCGe~l~v~~ 212 (240)
..||-|...+..++
T Consensus 53 ~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 53 DSCPVCRKSLTGQN 66 (78)
T ss_dssp CSCTTTCCCCCCSC
T ss_pred CcCcCcCCccCCcc
Confidence 56777777766544
No 186
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.77 E-value=9.5 Score=20.96 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.3
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 469999988864
No 187
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=40.67 E-value=19 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=15.2
Q ss_pred ccccceeecCCCCceeeeeCCCcccCC
Q 026283 193 GSKSQIIRCAGCGNIVWQPEGDFFSRN 219 (240)
Q Consensus 193 G~nnt~~~CpnCGe~l~v~~g~F~s~~ 219 (240)
+......+|.+||| .||| .++
T Consensus 18 ~~~~~~~~C~~Cge-----~GH~-ard 38 (56)
T 1u6p_A 18 RSQLDRDQCAYCKE-----KGHW-AKD 38 (56)
T ss_dssp STTCCTTBCSSSCC-----BSSC-GGG
T ss_pred CCCCCCCcceeCCC-----CCcc-ccc
Confidence 45566789999997 5887 543
No 188
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=40.66 E-value=11 Score=29.68 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=20.4
Q ss_pred cCCCCCCCccccccccceeecCCCCce
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
.-.||-||.... ..+...|-.||-+
T Consensus 16 H~lCrRCG~~sf--H~qK~~CgkCGYp 40 (97)
T 2zkr_2 16 HTLCRRCGSKAY--HLQKSTCGKCGYP 40 (97)
T ss_dssp EECCTTTCSSCE--ETTSCCBTTTCTT
T ss_pred CCcCCCCCCccC--cCccccCcccCCc
Confidence 447999999854 7788999999965
No 189
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=39.78 E-value=17 Score=24.80 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.7
Q ss_pred cCCCCCCCcccc
Q 026283 181 KGACPACKREFI 192 (240)
Q Consensus 181 eg~CPvC~~eFt 192 (240)
...||+|+++|.
T Consensus 47 ~~~C~~C~~~~~ 58 (60)
T 1vyx_A 47 NTACQICGVVYN 58 (60)
T ss_dssp CSBCTTTCCBCC
T ss_pred CCccCCCCCeee
Confidence 368999999884
No 190
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=39.77 E-value=11 Score=39.17 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.8
Q ss_pred hcCCCCCCC-c-------cccccccceeecCCCC
Q 026283 180 IKGACPACK-R-------EFIGSKSQIIRCAGCG 205 (240)
Q Consensus 180 Ieg~CPvC~-~-------eFtG~nnt~~~CpnCG 205 (240)
..-+||.|+ + +...||+-.--||.|.
T Consensus 274 ~~~~c~~~g~~~~~~~~p~~FSfN~p~GaCp~C~ 307 (993)
T 2ygr_A 274 EKLACPNGHALAVDDLEPRSFSFNSPYGACPDCS 307 (993)
T ss_dssp SSCBCTTCCCCSCSCCCGGGGCTTSTTTBCTTTT
T ss_pred ccccCCCCCCcccCCCChhhcCcCCCCCCCCCCc
Confidence 346899999 6 4578999999999996
No 191
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.58 E-value=17 Score=24.35 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=5.9
Q ss_pred ecCCCCceee
Q 026283 200 RCAGCGNIVW 209 (240)
Q Consensus 200 ~CpnCGe~l~ 209 (240)
.||-|...+.
T Consensus 54 ~CP~Cr~~~~ 63 (74)
T 2ep4_A 54 VCPLCNMPVL 63 (74)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCcCcccc
Confidence 5666666554
No 192
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.22 E-value=6.4 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=20.7
Q ss_pred CCCCCCCcccc-c---cc---------cceeecCCCCceeee
Q 026283 182 GACPACKREFI-G---SK---------SQIIRCAGCGNIVWQ 210 (240)
Q Consensus 182 g~CPvC~~eFt-G---~n---------nt~~~CpnCGe~l~v 210 (240)
-.|+.|++.|. - |+ .....|+-||.....
T Consensus 25 ~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp CCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred cCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCC
Confidence 47999999997 2 21 235789999986544
No 193
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=39.17 E-value=23 Score=27.53 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=21.6
Q ss_pred CCCCCCccccc------------cccceeecC--CCCceeeeeC
Q 026283 183 ACPACKREFIG------------SKSQIIRCA--GCGNIVWQPE 212 (240)
Q Consensus 183 ~CPvC~~eFtG------------~nnt~~~Cp--nCGe~l~v~~ 212 (240)
.||+|...+.- +.+-.+.|| +|++.+...+
T Consensus 55 ~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC~~~~~~~~ 98 (170)
T 3hcs_A 55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRH 98 (170)
T ss_dssp BCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTCCCEEEGGG
T ss_pred CCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCCCceecHhH
Confidence 89999988765 334667885 5888776544
No 194
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=38.93 E-value=9.9 Score=25.55 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=9.9
Q ss_pred eeecCCCCceeee
Q 026283 198 IIRCAGCGNIVWQ 210 (240)
Q Consensus 198 ~~~CpnCGe~l~v 210 (240)
...||-|+.++..
T Consensus 53 ~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 53 KSSCPVCGISYSF 65 (79)
T ss_dssp CCCCSSSCCCCCS
T ss_pred CCcCCCCCCcCCH
Confidence 5678888887765
No 195
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.85 E-value=14 Score=24.08 Aligned_cols=29 Identities=28% Similarity=0.649 Sum_probs=20.3
Q ss_pred CCCCCCCccccccc-----------cceeecCCCCceeee
Q 026283 182 GACPACKREFIGSK-----------SQIIRCAGCGNIVWQ 210 (240)
Q Consensus 182 g~CPvC~~eFtG~n-----------nt~~~CpnCGe~l~v 210 (240)
-.|+.|++.|.-.. .....|+-||.....
T Consensus 19 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred EECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 47999999986321 234789999976543
No 196
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=38.45 E-value=25 Score=23.80 Aligned_cols=28 Identities=25% Similarity=0.794 Sum_probs=23.7
Q ss_pred cCCCCCCCccccccccceeecCCCCcee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
+..|.||+.....-.+..+.|.+|....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~ 33 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGY 33 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEE
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHH
Confidence 5689999987766778999999998764
No 197
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.39 E-value=9.7 Score=19.69 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=8.4
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvh_A 5 SCSLCPQRSRD 15 (27)
T ss_dssp ECSSSSCEESS
T ss_pred cCCCcChhhCC
Confidence 58889888753
No 198
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=38.04 E-value=9.4 Score=19.54 Aligned_cols=11 Identities=27% Similarity=0.918 Sum_probs=8.3
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|+..|.-
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2m0f_A 4 KCRECGKQFTT 14 (29)
T ss_dssp ECTTTSCEESC
T ss_pred cCCCCCCccCC
Confidence 58888888763
No 199
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=37.83 E-value=7.8 Score=35.24 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=26.7
Q ss_pred hhhhhcCCCCC--CCccccccccceeecCCCCceee
Q 026283 176 NNFVIKGACPA--CKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 176 kRnLIeg~CPv--C~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
..+....+||. |++-.+-..+..-+|+.||+...
T Consensus 303 ~~~~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 303 QENLYYTACASEGCNKKVNLDHENNWRCEKCDRSYA 338 (444)
T ss_dssp CTTCEEEECCSTTCCCBEEECTTSCEEETTTTEEES
T ss_pred CCceEEccCCcccCCCccccCCCccEECCCCCCcCc
Confidence 45678899999 99987754556789999997643
No 200
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=37.73 E-value=14 Score=27.31 Aligned_cols=33 Identities=27% Similarity=0.666 Sum_probs=20.2
Q ss_pred cCCCCCCCcc-ccccccceeecCCCCceeeeeCCCc
Q 026283 181 KGACPACKRE-FIGSKSQIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 181 eg~CPvC~~e-FtG~nnt~~~CpnCGe~l~v~~g~F 215 (240)
.-.||.|+.. .--.-.-+-.|.+||..+ ..|-+
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~--AGGAy 60 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGYKI--AGGAY 60 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCcEE--ECCCc
Confidence 4579999973 221223347899999853 44443
No 201
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=37.62 E-value=9.5 Score=21.00 Aligned_cols=11 Identities=55% Similarity=1.404 Sum_probs=8.6
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 4 ~C~~C~k~f~~ 14 (32)
T 2kfq_A 4 ACPACPKRFMR 14 (32)
T ss_dssp SSSSSCTTHHH
T ss_pred CCCCCCcccCC
Confidence 68888888764
No 202
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.61 E-value=17 Score=24.57 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=22.8
Q ss_pred cCCCCCCCccccccc---c-----------ceeecCCCCceeeeeCCCccc
Q 026283 181 KGACPACKREFIGSK---S-----------QIIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 181 eg~CPvC~~eFtG~n---n-----------t~~~CpnCGe~l~v~~g~F~s 217 (240)
...|+.|+....|.. . .=.+|..|+.+|. ++.|+.
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~ 63 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA--NKRFVF 63 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT--TSCCCE
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC--CCccEe
Confidence 457999998888621 1 1257888888885 445533
No 203
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=43.81 E-value=6.9 Score=20.47 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=7.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2lvt_A 4 QCVMCGKAFTQ 14 (29)
Confidence 57888877754
No 204
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=37.33 E-value=14 Score=27.68 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=16.6
Q ss_pred CCCCCCccccccccceeecCCCCce
Q 026283 183 ACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
.|-+|-.-. -..+...||+||+.
T Consensus 17 rC~aCf~~t--~~~~k~FCp~CGn~ 39 (79)
T 2con_A 17 RCHGCFKTT--SDMNRVFCGHCGNK 39 (79)
T ss_dssp ECSSSCCEE--SCSSCCSCSSSCCS
T ss_pred EecccceEC--CCcccccccccCcc
Confidence 477775543 45678889999986
No 205
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.30 E-value=10 Score=20.63 Aligned_cols=11 Identities=27% Similarity=1.044 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 2elx_A 9 VCALCLKKFVS 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCcchhCC
Confidence 69999998864
No 206
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=37.26 E-value=17 Score=29.16 Aligned_cols=31 Identities=13% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCCCCCccccccc-----cceeecCCCCceeeeeCC
Q 026283 183 ACPACKREFIGSK-----SQIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 183 ~CPvC~~eFtG~n-----nt~~~CpnCGe~l~v~~g 213 (240)
-||-|++=+.=-. .....|++||-.-.+++.
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~~ 61 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP 61 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSCS
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCcEEcCCc
Confidence 4899998774332 346889999887665543
No 207
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=37.05 E-value=20 Score=23.49 Aligned_cols=11 Identities=27% Similarity=0.284 Sum_probs=6.7
Q ss_pred eecCCCCceee
Q 026283 199 IRCAGCGNIVW 209 (240)
Q Consensus 199 ~~CpnCGe~l~ 209 (240)
..||-|...+.
T Consensus 41 ~~CP~Cr~~~~ 51 (68)
T 1chc_A 41 PTCPLCKVPVE 51 (68)
T ss_dssp CSTTTTCCCCC
T ss_pred CcCcCCChhhH
Confidence 45666666654
No 208
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=36.85 E-value=11 Score=29.81 Aligned_cols=34 Identities=26% Similarity=0.615 Sum_probs=21.6
Q ss_pred hcCCCCCCCccccccccc-eeecCCCCceeeeeCCCc
Q 026283 180 IKGACPACKREFIGSKSQ-IIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt-~~~CpnCGe~l~v~~g~F 215 (240)
..-.||.|+..-+-=..+ +-.|..||+. +..|-+
T Consensus 35 aky~CpfCgk~~vKR~a~GIW~C~kCg~~--~AGGAy 69 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRAAVGIWKCKPCKKI--IAGGAW 69 (103)
T ss_dssp SCEECTTTCCEEEEEEETTEEEETTTTEE--EECCSS
T ss_pred cCCCCCCCCCceeeecCcceEEcCCCCCE--EeCCcc
Confidence 356899998764322222 3489999985 455554
No 209
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.74 E-value=10 Score=19.50 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=8.3
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 5 ~C~~C~~~f~~ 15 (30)
T 2m0d_A 5 QCDYCGRSFSD 15 (30)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCcccCC
Confidence 58888888753
No 210
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.68 E-value=12 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2ytb_A 12 YRCDQCGKAFSQ 23 (42)
T ss_dssp BCCTTTTCCBSS
T ss_pred eeCCCccchhCC
Confidence 369999998864
No 211
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.53 E-value=26 Score=22.33 Aligned_cols=27 Identities=26% Similarity=0.653 Sum_probs=18.5
Q ss_pred CCCCCCccccccc----------cceeecC-CCCceeee
Q 026283 183 ACPACKREFIGSK----------SQIIRCA-GCGNIVWQ 210 (240)
Q Consensus 183 ~CPvC~~eFtG~n----------nt~~~Cp-nCGe~l~v 210 (240)
.|+.|++.|. .. .....|+ .||.....
T Consensus 12 ~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~ 49 (66)
T 2eod_A 12 PCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVA 49 (66)
T ss_dssp ECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEE
T ss_pred eccccCCccC-HHHHHHHHHHcCCcCccCCcccCccccc
Confidence 5888998885 32 2356799 89886443
No 212
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.50 E-value=19 Score=25.04 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCCCCCccc--ccc-----------ccceeecCCCCceeee
Q 026283 183 ACPACKREF--IGS-----------KSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 183 ~CPvC~~eF--tG~-----------nnt~~~CpnCGe~l~v 210 (240)
.|+.|+..| .-. ......|+-||.....
T Consensus 52 ~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 92 (115)
T 2dmi_A 52 TDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFES 92 (115)
T ss_dssp CCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSS
T ss_pred cCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCC
Confidence 399999888 221 1234689999876543
No 213
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=36.34 E-value=10 Score=33.62 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=18.2
Q ss_pred CCCCCCCcccccc-----------ccceeecCCCCceee
Q 026283 182 GACPACKREFIGS-----------KSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~-----------nnt~~~CpnCGe~l~ 209 (240)
..|..|++++.-- ....-.|| ||.+|.
T Consensus 155 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~lr 192 (290)
T 3u31_A 155 AVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGIFK 192 (290)
T ss_dssp EEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCBEE
T ss_pred ceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCEEC
Confidence 4799999775321 12356899 998765
No 214
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.06 E-value=11 Score=21.03 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elp_A 11 KCPYCDFYFMK 21 (37)
T ss_dssp ECSSSSCEECS
T ss_pred ECCCCChhhcc
Confidence 69999988863
No 215
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=35.88 E-value=19 Score=23.60 Aligned_cols=11 Identities=27% Similarity=1.120 Sum_probs=6.5
Q ss_pred CCCCCCCcccc
Q 026283 182 GACPACKREFI 192 (240)
Q Consensus 182 g~CPvC~~eFt 192 (240)
..||+|..++.
T Consensus 52 ~~CP~Cr~~~~ 62 (71)
T 3ng2_A 52 NTCPTCRKKIN 62 (71)
T ss_dssp SBCTTTCCBCC
T ss_pred CCCCCCCCccC
Confidence 36666666554
No 216
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=35.75 E-value=17 Score=29.32 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.2
Q ss_pred ceeecCCCCceeeeeCC
Q 026283 197 QIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 197 t~~~CpnCGe~l~v~~g 213 (240)
...+||+||-.--|.+|
T Consensus 98 G~L~Cp~cgr~ypI~~G 114 (125)
T 3q87_A 98 GSLRCDMCGLIYPIKGS 114 (125)
T ss_dssp EEEEETTTCCEEEEETT
T ss_pred EEEECCCCCCEeeccCC
Confidence 45788888888888777
No 217
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=35.52 E-value=14 Score=28.70 Aligned_cols=28 Identities=21% Similarity=0.435 Sum_probs=17.7
Q ss_pred CCCCCCCccccccc-------------------cceeecCCCCceee
Q 026283 182 GACPACKREFIGSK-------------------SQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~n-------------------nt~~~CpnCGe~l~ 209 (240)
..||+|...|.--- +....||.|+.++.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 37888877665311 11345888888874
No 218
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.46 E-value=7.7 Score=20.37 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=8.4
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvg_A 5 RCPLCRAGCPS 15 (27)
T ss_dssp EETTTTEEESC
T ss_pred CCCCCCcccCC
Confidence 58889888753
No 219
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.39 E-value=22 Score=23.72 Aligned_cols=37 Identities=16% Similarity=0.512 Sum_probs=25.1
Q ss_pred cCCCCCCCcccccc--------cc-----ceeecCCCCceeeeeCCCcccCC
Q 026283 181 KGACPACKREFIGS--------KS-----QIIRCAGCGNIVWQPEGDFFSRN 219 (240)
Q Consensus 181 eg~CPvC~~eFtG~--------nn-----t~~~CpnCGe~l~v~~g~F~s~~ 219 (240)
...|+.|+....++ .+ .=.+|..|+.+|. +..|+..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~ 54 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV--GRGFLTER 54 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT--TSCCEECS
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC--CCccEeEC
Confidence 46799999988862 11 1258999999985 55564433
No 220
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=35.28 E-value=8 Score=38.76 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=22.9
Q ss_pred CCCCCCcccccc-----ccceeecCCCCceeeeeCC
Q 026283 183 ACPACKREFIGS-----KSQIIRCAGCGNIVWQPEG 213 (240)
Q Consensus 183 ~CPvC~~eFtG~-----nnt~~~CpnCGe~l~v~~g 213 (240)
-||.|..|+.-- .-|.+-||.||=.|+..+.
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~l~l~~~ 198 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPVACFDCGPSLSFVGE 198 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTCCCTTTSCCEEEESS
T ss_pred CCHHHHHHhcCcccccccCCCCcCCccCCeeEEeCC
Confidence 488888876543 2367789999999987653
No 221
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=34.97 E-value=22 Score=22.67 Aligned_cols=12 Identities=25% Similarity=1.016 Sum_probs=7.3
Q ss_pred cCCCCCCCcccc
Q 026283 181 KGACPACKREFI 192 (240)
Q Consensus 181 eg~CPvC~~eFt 192 (240)
...||.|..++.
T Consensus 44 ~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 44 ANTCPTCRKKIN 55 (64)
T ss_dssp CSBCTTTCCBCT
T ss_pred CCCCCCCCccCC
Confidence 346777766654
No 222
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=40.93 E-value=8.2 Score=20.05 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=8.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 5 ~C~~C~k~f~~ 15 (30)
T 2lvr_A 5 VCIHCQRQFAD 15 (30)
Confidence 58888887764
No 223
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=34.46 E-value=38 Score=25.24 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=15.7
Q ss_pred ccccccccceeecCCCCceeeee
Q 026283 189 REFIGSKSQIIRCAGCGNIVWQP 211 (240)
Q Consensus 189 ~eFtG~nnt~~~CpnCGe~l~v~ 211 (240)
|++.+-..+...|+.||-.|.-.
T Consensus 58 y~~s~~~~~r~FC~~CGs~l~~~ 80 (118)
T 3fac_A 58 YQFGTRTAKHWFCRTCGIYTHHQ 80 (118)
T ss_dssp ECCTTSCSEEEEETTTCCEEEEE
T ss_pred EecCCCCEeeEECCCCCccccCc
Confidence 44444444667899999998654
No 224
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=34.35 E-value=18 Score=33.60 Aligned_cols=36 Identities=19% Similarity=0.506 Sum_probs=23.8
Q ss_pred hcCCCCCCCcccc--ccccc------eeecCCCCceeeeeCCCc
Q 026283 180 IKGACPACKREFI--GSKSQ------IIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 180 Ieg~CPvC~~eFt--G~nnt------~~~CpnCGe~l~v~~g~F 215 (240)
=+-.||+|+.... .+.-- ...|+++.++.--++|..
T Consensus 253 ~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~~~v~~I~v~~DGsW 296 (360)
T 4fo9_A 253 PTWICPVCDKKAAYESLILDGLFMEILNDCSDVDEIKFQEDGSW 296 (360)
T ss_dssp CCCBCTTTCSBCCGGGEEEBHHHHHHHTTCSSCCEEEECC-CCE
T ss_pred CCeECCCCCcccCHHHeEEcHHHHHHHHhCCCCCEEEECCCCce
Confidence 3679999998764 11100 114789998888888887
No 225
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.26 E-value=14 Score=21.26 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2en7_A 13 YVCNECGKAFRS 24 (44)
T ss_dssp SCCTTTCCCCSS
T ss_pred eECCCCCCccCC
Confidence 369999998864
No 226
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=34.19 E-value=17 Score=24.27 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=16.9
Q ss_pred CCCCCCccccccc-----------cceeecCCCCcee
Q 026283 183 ACPACKREFIGSK-----------SQIIRCAGCGNIV 208 (240)
Q Consensus 183 ~CPvC~~eFtG~n-----------nt~~~CpnCGe~l 208 (240)
.|+.|++.|..-. .....|+.||...
T Consensus 5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f 41 (88)
T 1llm_C 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41 (88)
T ss_dssp ECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred cCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCcc
Confidence 5888888875421 2346788888654
No 227
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.09 E-value=12 Score=20.48 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2elt_A 11 KCPQCSYASAI 21 (36)
T ss_dssp ECSSSSCEESS
T ss_pred CCCCCCcccCC
Confidence 69999988863
No 228
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=34.01 E-value=20 Score=25.43 Aligned_cols=10 Identities=50% Similarity=1.444 Sum_probs=6.3
Q ss_pred CCCCCCCccc
Q 026283 182 GACPACKREF 191 (240)
Q Consensus 182 g~CPvC~~eF 191 (240)
..||.|..++
T Consensus 78 ~~CP~Cr~~~ 87 (91)
T 2l0b_A 78 GTCPVCRCMF 87 (91)
T ss_dssp CBCTTTCCBS
T ss_pred CcCcCcCccC
Confidence 4677776655
No 229
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=33.91 E-value=20 Score=26.12 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.1
Q ss_pred eeecCCCCceeee
Q 026283 198 IIRCAGCGNIVWQ 210 (240)
Q Consensus 198 ~~~CpnCGe~l~v 210 (240)
...||.|+..+..
T Consensus 50 ~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 50 SLCCPFCRRRVSS 62 (115)
T ss_dssp TSBCTTTCCBCHH
T ss_pred cCCCCCCCcccCc
Confidence 5679999888764
No 230
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=33.71 E-value=12 Score=20.41 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 1srk_A 9 VCRICLSAFTT 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred eCCCCCcccCC
Confidence 59999998864
No 231
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=33.60 E-value=20 Score=29.50 Aligned_cols=9 Identities=22% Similarity=0.682 Sum_probs=4.2
Q ss_pred CCCCCCccc
Q 026283 183 ACPACKREF 191 (240)
Q Consensus 183 ~CPvC~~eF 191 (240)
.|-+|+.+.
T Consensus 60 lCg~C~~~q 68 (143)
T 2dkt_A 60 QCINCEKLQ 68 (143)
T ss_dssp EESSSCCEE
T ss_pred eecccCccc
Confidence 344444444
No 232
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.55 E-value=13 Score=20.60 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2elq_A 11 KCSLCEYATRS 21 (36)
T ss_dssp ECSSSSCEESC
T ss_pred cCCCCCchhCC
Confidence 69999988863
No 233
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=33.43 E-value=16 Score=25.00 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=5.4
Q ss_pred CCCCCCcccc
Q 026283 183 ACPACKREFI 192 (240)
Q Consensus 183 ~CPvC~~eFt 192 (240)
.|+.|++.|.
T Consensus 47 ~C~~C~~~f~ 56 (106)
T 2ee8_A 47 TCDICHKAFR 56 (106)
T ss_dssp BCSSSCCBCS
T ss_pred CCCCccchhC
Confidence 4555555553
No 234
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=33.24 E-value=16 Score=28.42 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=28.6
Q ss_pred HHHhhhhhcCCCCCCCccccccccce---eecCCCCceeeeeCC
Q 026283 173 TVANNFVIKGACPACKREFIGSKSQI---IRCAGCGNIVWQPEG 213 (240)
Q Consensus 173 wWlkRnLIeg~CPvC~~eFtG~nnt~---~~CpnCGe~l~v~~g 213 (240)
..++|..--..||.|+..|--..+.. ..|..||+.+....+
T Consensus 119 ~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~ 162 (216)
T 3fb4_A 119 ELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRID 162 (216)
T ss_dssp HHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGG
T ss_pred HHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCC
Confidence 34455444457999999887655543 469999998876554
No 235
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.16 E-value=13 Score=20.58 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2elv_A 11 DCHICERKFKN 21 (36)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCCccCC
Confidence 69999988864
No 236
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=33.01 E-value=14 Score=26.47 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=20.3
Q ss_pred CCCCCCCccccccc---------cceeecCCCCceee
Q 026283 182 GACPACKREFIGSK---------SQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPvC~~eFtG~n---------nt~~~CpnCGe~l~ 209 (240)
-.|+.|++.|.-.. .....|+-||....
T Consensus 75 ~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 75 FVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFT 111 (129)
T ss_dssp EECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCS
T ss_pred eECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccC
Confidence 47999999996432 23468999997643
No 237
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.91 E-value=12 Score=20.64 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 11 ~C~~C~k~f~~ 21 (36)
T 2els_A 11 TCEYCNKVFKF 21 (36)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCCCceeCC
Confidence 69999988863
No 238
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=32.79 E-value=21 Score=30.65 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCccccccccc---eeecCCCC
Q 026283 167 APLLIGTVANNFVIKGACPACKREFIGSKSQ---IIRCAGCG 205 (240)
Q Consensus 167 ap~li~wWlkRnLIeg~CPvC~~eFtG~nnt---~~~CpnCG 205 (240)
|+-|.+..-...|---.|+-|+-+|+.-+++ ...||-|.
T Consensus 120 AW~LvRf~~s~~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 120 AWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp HHHHHHHHHTTSEEEEECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred HHHHHHHhccCceeeCcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 4455555555666677899999999998887 46799998
No 239
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=32.74 E-value=30 Score=22.73 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=6.9
Q ss_pred eecCCCCceeee
Q 026283 199 IRCAGCGNIVWQ 210 (240)
Q Consensus 199 ~~CpnCGe~l~v 210 (240)
..||-|...+..
T Consensus 52 ~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 52 KKCPICRVDIEA 63 (69)
T ss_dssp SBCTTTCSBSCS
T ss_pred CCCcCcCccccC
Confidence 346776665543
No 240
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=32.60 E-value=5.7 Score=24.71 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=11.6
Q ss_pred CCCCCCccccccccce
Q 026283 183 ACPACKREFIGSKSQI 198 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~ 198 (240)
.||+|+.+....+.-+
T Consensus 5 ~CpvCk~q~Pd~kt~~ 20 (28)
T 2jvx_A 5 CCPKCQYQAPDMDTLQ 20 (28)
T ss_dssp ECTTSSCEESSHHHHH
T ss_pred cCccccccCcChHHHH
Confidence 6999988877666543
No 241
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.54 E-value=17 Score=25.87 Aligned_cols=27 Identities=26% Similarity=0.691 Sum_probs=19.6
Q ss_pred CCCCCCccc-ccc----------ccceeecCCCCceee
Q 026283 183 ACPACKREF-IGS----------KSQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~eF-tG~----------nnt~~~CpnCGe~l~ 209 (240)
.|+.|+..| .-. ......|+-||....
T Consensus 36 ~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 36 SCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73 (96)
T ss_dssp ECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCS
T ss_pred CCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeC
Confidence 799999999 422 234568999997654
No 242
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.51 E-value=27 Score=25.22 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=18.5
Q ss_pred CCCCCCccccc--cc---cce--eecCCCCceeeeeCCC
Q 026283 183 ACPACKREFIG--SK---SQI--IRCAGCGNIVWQPEGD 214 (240)
Q Consensus 183 ~CPvC~~eFtG--~n---nt~--~~CpnCGe~l~v~~g~ 214 (240)
.|+.|+..|-. +. ++. .+||.|+.....+..+
T Consensus 30 ~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 30 SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 46666655532 21 222 6788888776655554
No 243
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=32.29 E-value=17 Score=27.70 Aligned_cols=11 Identities=45% Similarity=1.180 Sum_probs=1.5
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|..
T Consensus 23 ~C~~C~~~f~~ 33 (190)
T 2i13_A 23 ACPECGKSFSR 33 (190)
T ss_dssp --------CCS
T ss_pred cCCCCccccCC
Confidence 46666666543
No 244
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.26 E-value=17 Score=20.87 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2eos_A 12 YPCEICGTRFRH 23 (42)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCccCC
Confidence 369999998864
No 245
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.23 E-value=26 Score=23.48 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=6.8
Q ss_pred eecCCCCceeeee
Q 026283 199 IRCAGCGNIVWQP 211 (240)
Q Consensus 199 ~~CpnCGe~l~v~ 211 (240)
..||.|...+...
T Consensus 51 ~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 51 NRCPKCNIVVHQT 63 (72)
T ss_dssp SSCTTTCCCCCSS
T ss_pred CcCCCcCcccCcc
Confidence 4555555555443
No 246
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.21 E-value=14 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=22.6
Q ss_pred CCCCCCCccccccccceeecCCCCcee
Q 026283 182 GACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
-.|-+|+.-..|+..|-.+|..|+-.+
T Consensus 29 t~C~~C~~~lwGl~kqG~~C~~C~~~~ 55 (74)
T 2db6_A 29 KFCDVCARMIVLNNKFGLRCKNCKTNI 55 (74)
T ss_dssp EECSSSCCEECHHHHEEEEESSSCCEE
T ss_pred cCchhcChhhccccCCccccCCCCCcc
Confidence 358899999999888999999998654
No 247
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=32.06 E-value=39 Score=27.15 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 026283 158 LATWVLPIAAPLLIGTVANNFVIK 181 (240)
Q Consensus 158 ~l~~vlPvaap~li~wWlkRnLIe 181 (240)
+++.++-++++.++++|+-||++.
T Consensus 64 iil~~v~lv~LgvvG~~lGR~t~~ 87 (122)
T 2f93_B 64 LGLIILLGINLGLVAATLGGDTAA 87 (122)
T ss_dssp HHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333344455567788999998763
No 248
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=32.00 E-value=89 Score=21.40 Aligned_cols=43 Identities=12% Similarity=0.246 Sum_probs=20.2
Q ss_pred hhHHHHHHHHhhHHHHHhHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHhhhhh
Q 026283 46 GEAWRDAWRTANNGFEQLVFDAKKTAERIDRQYSVSRRLNSAARTAAVRARELDREF 102 (240)
Q Consensus 46 ~~a~r~a~r~an~~~e~~~fear~~a~r~D~~Y~vs~r~a~aa~~a~e~A~eiD~~f 102 (240)
.++|...|...+..++++..... ..++.-+.+.+.-++.|+.|
T Consensus 51 ~~af~~~~~~~~~~~~~~~~~L~--------------~i~~~L~~~A~~~~~~D~~y 93 (93)
T 4ioe_A 51 QAKFRGEFIQSKQAMQQYIPILE--------------GISTDLKRIADKFRNTDNAY 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhccC
Confidence 34455555555544444444333 33444445555556666554
No 249
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.94 E-value=16 Score=20.83 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=9.3
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2yte_A 11 YSCAECKETFSD 22 (42)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 369999988864
No 250
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=31.72 E-value=87 Score=22.66 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=1.3
Q ss_pred HHHHHHhhhh
Q 026283 170 LIGTVANNFV 179 (240)
Q Consensus 170 li~wWlkRnL 179 (240)
++.+++.+.+
T Consensus 74 ~~~~~~~~~i 83 (163)
T 2f95_B 74 LVAATLGGDT 83 (163)
T ss_dssp HHC-------
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 251
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.69 E-value=17 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2yti_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp TCCSSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 369999998864
No 252
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.58 E-value=17 Score=21.33 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2enf_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eECCCCCcccCC
Confidence 369999998864
No 253
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.22 E-value=12 Score=21.17 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=8.3
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elm_A 11 YCSQCHYSSIT 21 (37)
T ss_dssp ECSSSSCEEEC
T ss_pred ECCCCCcccCC
Confidence 58888888753
No 254
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.19 E-value=17 Score=21.46 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eon_A 14 KCQVCGKAFRV 24 (46)
T ss_dssp BCSSSCCBCSS
T ss_pred CCCCCCcccCc
Confidence 69999998864
No 255
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.09 E-value=18 Score=21.19 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq2_A 13 YQCNECGKAFSQ 24 (46)
T ss_dssp SSCCSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 369999998874
No 256
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=30.90 E-value=13 Score=33.23 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=19.9
Q ss_pred CCCCC--CCccccc-------cccceeecCCCCceee
Q 026283 182 GACPA--CKREFIG-------SKSQIIRCAGCGNIVW 209 (240)
Q Consensus 182 g~CPv--C~~eFtG-------~nnt~~~CpnCGe~l~ 209 (240)
..|.. |++++.. .....-.||.||.+|.
T Consensus 160 ~~C~~~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 196 (323)
T 1j8f_A 160 SHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVK 196 (323)
T ss_dssp EEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBEE
T ss_pred eecCCCccCccccHHHHHHhhccCCCCCCcCCCCccC
Confidence 45999 9987632 1234679999998875
No 257
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=30.73 E-value=16 Score=29.22 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=13.7
Q ss_pred eeecCCCCceeeeeCC
Q 026283 198 IIRCAGCGNIVWQPEG 213 (240)
Q Consensus 198 ~~~CpnCGe~l~v~~g 213 (240)
.-.||.||+.|..+.+
T Consensus 24 ~~FCPeCgNmL~pked 39 (133)
T 3qt1_I 24 FRFCRDCNNMLYPRED 39 (133)
T ss_dssp CCBCTTTCCBCBCCBC
T ss_pred CeeCCCCCCEeeECcc
Confidence 3579999999999876
No 258
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.68 E-value=11 Score=20.89 Aligned_cols=11 Identities=36% Similarity=1.220 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elo_A 11 SCPVCEKSFSE 21 (37)
T ss_dssp EETTTTEECSS
T ss_pred CCCCCCCccCC
Confidence 69999988863
No 259
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=30.44 E-value=26 Score=27.53 Aligned_cols=14 Identities=50% Similarity=0.940 Sum_probs=7.9
Q ss_pred ceeecCCCCceeee
Q 026283 197 QIIRCAGCGNIVWQ 210 (240)
Q Consensus 197 t~~~CpnCGe~l~v 210 (240)
.--.|+.||++|.+
T Consensus 6 ~fYkC~~CGnivev 19 (126)
T 1vzi_A 6 QVYKCEVCGNIVEV 19 (126)
T ss_dssp CEEECTTTCCEEEE
T ss_pred cEEEcCCCCeEEEE
Confidence 34456666666654
No 260
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.33 E-value=27 Score=24.05 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=19.7
Q ss_pred CCCCCCCccccccc-----------cceeecCCCCceeee
Q 026283 182 GACPACKREFIGSK-----------SQIIRCAGCGNIVWQ 210 (240)
Q Consensus 182 g~CPvC~~eFtG~n-----------nt~~~CpnCGe~l~v 210 (240)
-.|+.|++.|.-.. .....|+-||.....
T Consensus 38 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 77 (110)
T 2csh_A 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW 77 (110)
T ss_dssp EECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred ccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence 46999998886421 234689999876543
No 261
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.15 E-value=17 Score=21.23 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2emg_A 13 FICSECGKVFTH 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred EECCccCcccCC
Confidence 369999998874
No 262
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.08 E-value=19 Score=21.14 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2yth_A 13 FQCEECGKRFTQ 24 (46)
T ss_dssp BCCSSSCCCBSS
T ss_pred CCCCCCCcccCC
Confidence 369999998865
No 263
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=29.99 E-value=26 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=10.9
Q ss_pred HHHHhhhhhcCCCCCCCccc
Q 026283 172 GTVANNFVIKGACPACKREF 191 (240)
Q Consensus 172 ~wWlkRnLIeg~CPvC~~eF 191 (240)
.-||++ ...||.|..+|
T Consensus 83 ~~Wl~~---~~~CP~Cr~~~ 99 (106)
T 3dpl_R 83 SRWLKT---RQVCPLDNREW 99 (106)
T ss_dssp HHHHTT---CSBCSSSCSBC
T ss_pred HHHHHc---CCcCcCCCCcc
Confidence 345554 46788887775
No 264
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.97 E-value=16 Score=24.04 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=23.8
Q ss_pred hhcCCCCCCCccccccc----c-----ceeecCCCCceeeeeCCCcccC
Q 026283 179 VIKGACPACKREFIGSK----S-----QIIRCAGCGNIVWQPEGDFFSR 218 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~n----n-----t~~~CpnCGe~l~v~~g~F~s~ 218 (240)
+....|+.|+....|-. + .=.+|..|+.+|. ++.|+..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~ 49 (66)
T 1nyp_A 3 MGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFL--GHRHYER 49 (66)
T ss_dssp CCCCEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCS--SSCCEEE
T ss_pred cCCCCCcccCCEecceEEEECccccccCcCEECCCCCCCC--CCceEeE
Confidence 34567999988776421 1 1157889999885 3456443
No 265
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.90 E-value=19 Score=21.14 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoh_A 13 YECKECRKTFIQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCCcCchhCC
Confidence 369999998864
No 266
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.86 E-value=18 Score=21.20 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em6_A 13 YKCDVCGKEFSQ 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eECCCCCcccCC
Confidence 469999998864
No 267
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=29.75 E-value=25 Score=30.69 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=25.8
Q ss_pred hhhcCCCC--CCCcc---------ccccccceeecCCCCceeeee
Q 026283 178 FVIKGACP--ACKRE---------FIGSKSQIIRCAGCGNIVWQP 211 (240)
Q Consensus 178 nLIeg~CP--vC~~e---------FtG~nnt~~~CpnCGe~l~v~ 211 (240)
+-.=|.|| -|+.+ -.|-......||+|.++-.-+
T Consensus 103 ~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~ 147 (215)
T 4dgl_A 103 QGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPK 147 (215)
T ss_dssp TTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCS
T ss_pred cCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCC
Confidence 56779999 67755 346677789999999987643
No 268
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=29.74 E-value=15 Score=29.47 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=23.4
Q ss_pred HHhhhhhcCCCCCCCccccccccceeecCCCCce
Q 026283 174 VANNFVIKGACPACKREFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 174 WlkRnLIeg~CPvC~~eFtG~nnt~~~CpnCGe~ 207 (240)
..+..|+-..|+.||.-+. --...||.||..
T Consensus 40 l~~g~L~~~rC~~CG~~~f---PPr~~Cp~C~s~ 70 (145)
T 2gnr_A 40 LKQNKIIGSKCSKCGRIFV---PARSYCEHCFVK 70 (145)
T ss_dssp HHTTCCEEEECTTTCCEEE---SCCSEETTTTEE
T ss_pred hhCCEEEEEEECCCCcEEe---CCCCCCCCCCCC
Confidence 3467788889999998754 234579999865
No 269
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.57 E-value=34 Score=22.59 Aligned_cols=36 Identities=14% Similarity=0.402 Sum_probs=23.6
Q ss_pred hcCCCCCCCccccccc----c-----ceeecCCCCceeeeeCCCccc
Q 026283 180 IKGACPACKREFIGSK----S-----QIIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~n----n-----t~~~CpnCGe~l~v~~g~F~s 217 (240)
-...|+.|+....+-. + .=.+|..|+.+|. +..|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~ 48 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLA--GQRFTA 48 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCT--TSCEEE
T ss_pred CcCCCcccCCEeCcceEEECccccccCcCEECCCCCCCC--CCccEe
Confidence 4568999998876511 1 1157899999986 445644
No 270
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=29.20 E-value=14 Score=32.14 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=8.9
Q ss_pred CCCCCCCcccc
Q 026283 182 GACPACKREFI 192 (240)
Q Consensus 182 g~CPvC~~eFt 192 (240)
..|..|++++.
T Consensus 135 ~~C~~C~~~~~ 145 (273)
T 3riy_A 135 TRCTSCGVVAE 145 (273)
T ss_dssp EEETTTCCEEE
T ss_pred eEcCCCCCccc
Confidence 47999998864
No 271
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.18 E-value=29 Score=23.31 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=24.1
Q ss_pred hhhcCCCCCCCccccccccce-----------eecCCCCceeeeeCCCccc
Q 026283 178 FVIKGACPACKREFIGSKSQI-----------IRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 178 nLIeg~CPvC~~eFtG~nnt~-----------~~CpnCGe~l~v~~g~F~s 217 (240)
.+-...|+.|+.......... ..|..|+.+|.-. .|+.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~~~~ 56 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG--LFYE 56 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG--CSEE
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC--CeEe
Confidence 345678999998875322211 5788899887543 4544
No 272
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=29.11 E-value=30 Score=24.54 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=7.4
Q ss_pred CCCCCCCcccc
Q 026283 182 GACPACKREFI 192 (240)
Q Consensus 182 g~CPvC~~eFt 192 (240)
..||+|+..++
T Consensus 49 ~~cP~~~~~l~ 59 (85)
T 2kr4_A 49 PTDPFNRQMLT 59 (85)
T ss_dssp SBCTTTCCBCC
T ss_pred CCCCCCcCCCC
Confidence 56777776664
No 273
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=29.02 E-value=48 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=16.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 026283 134 LGRSFATIFFLWFALSGWLFRILI 157 (240)
Q Consensus 134 lG~wL~tl~~~wll~SGWLvn~~l 157 (240)
-|..++..+++|++++.-.=+.+|
T Consensus 40 p~~al~a~~~~w~lG~~~~Qrvi~ 63 (75)
T 1p58_D 40 PGFTIMAAILAYTIGTTHFQRVLI 63 (75)
T ss_pred hHHHHHHHHHHHHHcCChHHHHHH
Confidence 455666778889888866555554
No 274
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=28.93 E-value=29 Score=29.41 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=24.7
Q ss_pred hhcCCCC--CCCcc---------ccccccceeecCCCCceeeee
Q 026283 179 VIKGACP--ACKRE---------FIGSKSQIIRCAGCGNIVWQP 211 (240)
Q Consensus 179 LIeg~CP--vC~~e---------FtG~nnt~~~CpnCGe~l~v~ 211 (240)
-.=|.|| -|+.+ -.|-....+.||+|.++-.-+
T Consensus 104 g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~ 147 (182)
T 1qf8_A 104 GDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPK 147 (182)
T ss_dssp TTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCS
T ss_pred CcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCC
Confidence 4679999 67533 456777889999999976544
No 275
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=28.86 E-value=12 Score=29.25 Aligned_cols=31 Identities=26% Similarity=0.618 Sum_probs=20.8
Q ss_pred eeecCCCCceeeeeCCCcccCCCCCCCCCCCCCCe
Q 026283 198 IIRCAGCGNIVWQPEGDFFSRNGGGKKSTKSDDDI 232 (240)
Q Consensus 198 ~~~CpnCGe~l~v~~g~F~s~~g~~~~~r~t~pgt 232 (240)
.+.||.||+ -+...| .-.|-+...|+.+|..
T Consensus 3 ~I~CP~CG~---R~e~EF-~ygGeA~~~RP~~~~~ 33 (99)
T 2gag_D 3 LIDCPNCGP---RNENEF-KYGGEAHVAYPADPHA 33 (99)
T ss_dssp EEEETTTEE---EEGGGS-EEEEESSCCCCSCGGG
T ss_pred EecCCCCCC---cchhhE-ecCceecccCCCCCcc
Confidence 478999993 566667 5456566667766654
No 276
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=28.74 E-value=43 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhhHHHHHhHHHHHHHHHhhh
Q 026283 46 GEAWRDAWRTANNGFEQLVFDAKKTAERID 75 (240)
Q Consensus 46 ~~a~r~a~r~an~~~e~~~fear~~a~r~D 75 (240)
.+.+.+.+.+.|..-..+.+|.|+.-.+.|
T Consensus 42 ~~~l~~~I~~IN~~L~~l~~~Ir~~~~q~~ 71 (238)
T 3nw0_A 42 VDKLEDFINNINSVLESLYIEIKRGVTEDD 71 (238)
T ss_dssp CCCHHHHHHHHHHHHGGGTEEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHhhhcCcEEEEeecCCC
Confidence 356777888888888888877776544444
No 277
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.32 E-value=20 Score=20.94 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq1_A 13 YKCNECGKAFRA 24 (46)
T ss_dssp CCCTTTTCCCSS
T ss_pred eECCcCChhhCC
Confidence 369999998864
No 278
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.30 E-value=35 Score=23.33 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=18.8
Q ss_pred CCCCCCCcccc--ccccc---------eeecCCCCceeeeeCCCccc
Q 026283 182 GACPACKREFI--GSKSQ---------IIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 182 g~CPvC~~eFt--G~nnt---------~~~CpnCGe~l~v~~g~F~s 217 (240)
..|..|+.... +.--+ =.+|..|+.+|. ++.|+.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~ 60 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA--DEPFTC 60 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS--SCCEEE
T ss_pred CcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC--CCccEe
Confidence 46777777666 22111 146777777764 444533
No 279
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.13 E-value=21 Score=20.73 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ep1_A 13 YECSDCGKSFIK 24 (46)
T ss_dssp SCCSSSCCCCSS
T ss_pred cCCCCCCchhCC
Confidence 469999998864
No 280
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=28.10 E-value=57 Score=30.93 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=17.4
Q ss_pred CCCCC--CCcccccc--------ccceeecCCCCc
Q 026283 182 GACPA--CKREFIGS--------KSQIIRCAGCGN 206 (240)
Q Consensus 182 g~CPv--C~~eFtG~--------nnt~~~CpnCGe 206 (240)
-.|+. |++++.=. -.....||+|+.
T Consensus 136 ~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~ 170 (595)
T 3f9v_A 136 YKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGK 170 (595)
T ss_dssp CEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCC
T ss_pred EEecCCCCCCEEEEEeccccCCcccCCCcCCCCCC
Confidence 46999 99876522 223458999998
No 281
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=28.08 E-value=18 Score=30.94 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=28.6
Q ss_pred HHHhhhhhcCCCCCCCccccccccc---eeecCCCCceeeeeCCC
Q 026283 173 TVANNFVIKGACPACKREFIGSKSQ---IIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 173 wWlkRnLIeg~CPvC~~eFtG~nnt---~~~CpnCGe~l~v~~g~ 214 (240)
..++|-+--..||.||..|-=..|. .-.|..||+.|.+...+
T Consensus 123 ~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD 167 (230)
T 3gmt_A 123 EIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDD 167 (230)
T ss_dssp HHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGG
T ss_pred HHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCC
Confidence 4556666667899999766433332 24699999999876543
No 282
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=28.06 E-value=14 Score=28.16 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred hhcCCCCCCCc---cccccccceeecCCCCce
Q 026283 179 VIKGACPACKR---EFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 179 LIeg~CPvC~~---eFtG~nnt~~~CpnCGe~ 207 (240)
..++-|++|+. ......|.+..|+.|+++
T Consensus 147 ~~~~~~~~~~~~~~~~v~~~~g~~~c~~c~~~ 178 (184)
T 1pvm_A 147 DYQHLCPKCGVGVLEPVYNEKGEIKVFRCSNP 178 (184)
T ss_dssp CCCCBCTTTSSSBEEEEECTTSCEEEEEESCT
T ss_pred ceeeeccccCCccccceEEECCEEEccccCCc
Confidence 35888999985 445556667889999875
No 283
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=28.02 E-value=17 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.675 Sum_probs=15.2
Q ss_pred CCCCCCCccccccc----------cceeecCCCCcee
Q 026283 182 GACPACKREFIGSK----------SQIIRCAGCGNIV 208 (240)
Q Consensus 182 g~CPvC~~eFtG~n----------nt~~~CpnCGe~l 208 (240)
-.|+.|++.|.-.. .....|+-||...
T Consensus 43 ~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f 79 (107)
T 1wjp_A 43 AVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTF 79 (107)
T ss_dssp BCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEEC
T ss_pred ccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchh
Confidence 36777777764311 2235677777644
No 284
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=28.00 E-value=11 Score=37.39 Aligned_cols=30 Identities=33% Similarity=0.957 Sum_probs=23.2
Q ss_pred CCCCCCccccccc-----cceeecCCCCcee-eeeC
Q 026283 183 ACPACKREFIGSK-----SQIIRCAGCGNIV-WQPE 212 (240)
Q Consensus 183 ~CPvC~~eFtG~n-----nt~~~CpnCGe~l-~v~~ 212 (240)
-||.|..|+.--. -|.+-||.||=.| +..+
T Consensus 69 mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l~~l~~ 104 (657)
T 3ttc_A 69 LCPACDKEYRDPLDRRFHAQPVACPECGPYLEWVSH 104 (657)
T ss_dssp CCHHHHHHHHCTTSTTTTCTTCCCTTTSCCEEEEET
T ss_pred CChHHHHHhCCCCCCcCcCCCCcCcccCccceEeec
Confidence 4999998876543 3778899999999 6644
No 285
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.99 E-value=20 Score=21.04 Aligned_cols=12 Identities=25% Similarity=0.766 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2enh_A 13 YECDVCRKAFSH 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred cCCCCcCchhCC
Confidence 369999998864
No 286
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=27.96 E-value=17 Score=20.61 Aligned_cols=11 Identities=55% Similarity=1.156 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 8 ~C~~C~k~f~~ 18 (39)
T 1njq_A 8 TCSFCKREFRS 18 (39)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCCCcccCC
Confidence 69999988864
No 287
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=27.88 E-value=54 Score=26.50 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=28.9
Q ss_pred ccccc--cc----ceeecCCCCceeeeeCCCcccCCCCCCCCCCCCCCee
Q 026283 190 EFIGS--KS----QIIRCAGCGNIVWQPEGDFFSRNGGGKKSTKSDDDII 233 (240)
Q Consensus 190 eFtG~--nn----t~~~CpnCGe~l~v~~g~F~s~~g~~~~~r~t~pgtI 233 (240)
.|+|= +| -.-.|..||++|.-.+.+|-|+.|=.|=...-+++.|
T Consensus 6 ~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v 55 (124)
T 2kv1_A 6 FFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSV 55 (124)
T ss_dssp CCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSC
T ss_pred CccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceE
Confidence 56664 44 4789999999999999999444343333334444544
No 288
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=27.81 E-value=37 Score=24.45 Aligned_cols=16 Identities=25% Similarity=0.669 Sum_probs=8.5
Q ss_pred eeecCCCCceeeeeCC
Q 026283 198 IIRCAGCGNIVWQPEG 213 (240)
Q Consensus 198 ~~~CpnCGe~l~v~~g 213 (240)
...||-|..++....|
T Consensus 82 ~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 82 SLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CCBCTTTCCBSSSCSS
T ss_pred CCcCCCCCCccCCCCC
Confidence 4456666665544433
No 289
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.73 E-value=24 Score=24.63 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=12.4
Q ss_pred hhhhcCCCCCCCccccc
Q 026283 177 NFVIKGACPACKREFIG 193 (240)
Q Consensus 177 RnLIeg~CPvC~~eFtG 193 (240)
.++.++.|+.|..+|..
T Consensus 11 ~~~~~~~C~IC~~~~~~ 27 (81)
T 2ecl_A 11 WDVECDTCAICRVQVMD 27 (81)
T ss_dssp CSCCCSCBTTTTBCTTS
T ss_pred ecCCCCCCcccChhhhc
Confidence 35677888888888843
No 290
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=27.63 E-value=2.2e+02 Score=23.91 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhhhhh--hhHhHHhhhhhhhhhchhHHHHHHHhhCC---CCchHHHHHHHHHHHHH
Q 026283 84 LNSAARTAAVRARELDREFA--ISVRWRSFRMDFSRNWPRYRKQLNDFLNT---PLGRSFATIFFLWFALS 149 (240)
Q Consensus 84 ~a~aa~~a~e~A~eiD~~fg--i~rR~R~f~~D~~r~wP~yrrql~~F~~T---~lG~wL~tl~~~wll~S 149 (240)
.+++++.-...+.|+++++. +..-.+.+...-......+.+-..+.... .+|+.+++|.|...+..
T Consensus 69 ~~~~~~~Lr~vgdEle~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGi~NWGRIVaLfaFgg~La~ 139 (189)
T 3pk1_A 69 SRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAK 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCSTTCCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 45666666667777777766 33333322211111223344444433333 45999999988777664
No 291
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.58 E-value=21 Score=20.73 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eov_A 13 YKCSDCGKSFTW 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCccChhhCC
Confidence 469999999864
No 292
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A
Probab=27.58 E-value=12 Score=30.25 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=18.4
Q ss_pred ecCCCCceeeee-CCCcccCCCCCCCCCCCC------CCeeeeecc
Q 026283 200 RCAGCGNIVWQP-EGDFFSRNGGGKKSTKSD------DDIIDVDFE 238 (240)
Q Consensus 200 ~CpnCGe~l~v~-~g~F~s~~g~~~~~r~t~------pgtIDVe~e 238 (240)
+||+|| |-.. .+-| + .+.+ +|+|.|+++
T Consensus 85 ~CP~gg--LDLS~~~AF-~--------~Ia~~g~G~~~G~i~V~w~ 119 (125)
T 1bw3_A 85 QCANGG--LDLDWDTVF-T--------KIDTNGIGYQQGHLNVNYQ 119 (125)
T ss_dssp CCSSSS--CCSCSSSSH-H--------HHCSSCHHHHHSEEEEEEE
T ss_pred eCCCCC--CCCCCHHHH-H--------HHhccCCcccCcEEEEEEE
Confidence 799988 4444 5566 3 3333 688988875
No 293
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.47 E-value=16 Score=21.18 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=8.7
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (44)
T 2yu5_A 14 KCSKCDRVFTQ 24 (44)
T ss_dssp ECSSSSCEESS
T ss_pred ECCCCCchhCC
Confidence 58899888864
No 294
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.47 E-value=21 Score=20.98 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2en9_A 13 FKCNECKKTFTQ 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred EECCccCcccCC
Confidence 369999998864
No 295
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=27.34 E-value=31 Score=32.66 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.8
Q ss_pred hcCCCCCCCccccccccceeecCCCCceeee
Q 026283 180 IKGACPACKREFIGSKSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt~~~CpnCGe~l~v 210 (240)
--..|.+|+...-|+..|-.+|-.|+-.+-.
T Consensus 112 ~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~ 142 (674)
T 3pfq_A 112 SPTFCDHCGSLLYGLIHQGMKCDTCMMNVHK 142 (674)
T ss_dssp SCCCCSSSCSCCBBSSSCEECCSSSCCCBCS
T ss_pred CCCCCCccccccchhhcCccccccCCcchhh
Confidence 4468999999988999999999999876643
No 296
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.27 E-value=43 Score=26.64 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=29.3
Q ss_pred hcCCCCCCCccccccccceeecCCCCceeeeeCCCc
Q 026283 180 IKGACPACKREFIGSKSQIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~nnt~~~CpnCGe~l~v~~g~F 215 (240)
-+..|..|+..|.-+-|+-.+|..|.--|=..=|.+
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 468899999999778888889999888776665555
No 297
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.26 E-value=28 Score=24.62 Aligned_cols=39 Identities=18% Similarity=0.503 Sum_probs=24.8
Q ss_pred hcCCCCCCCccccc--ccc---------ceeecCCCCceeeeeCCCcccCCC
Q 026283 180 IKGACPACKREFIG--SKS---------QIIRCAGCGNIVWQPEGDFFSRNG 220 (240)
Q Consensus 180 Ieg~CPvC~~eFtG--~nn---------t~~~CpnCGe~l~v~~g~F~s~~g 220 (240)
-...|+.|+..... ..- .=.+|..|+.+| .++.|+..+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L--~~~~~~~~~g 53 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL--ANETFVAKDN 53 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCT--TSSCCEEETT
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCC--CcCeeECcCC
Confidence 35679999988762 111 125788999988 3555655444
No 298
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.11 E-value=23 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2emz_A 13 FKCNECGKGFGR 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 369999998864
No 299
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.96 E-value=35 Score=23.77 Aligned_cols=37 Identities=30% Similarity=0.801 Sum_probs=24.4
Q ss_pred cCCCCCCCcccc-ccc---------cceeecCCCCceeeeeCCCcccCCC
Q 026283 181 KGACPACKREFI-GSK---------SQIIRCAGCGNIVWQPEGDFFSRNG 220 (240)
Q Consensus 181 eg~CPvC~~eFt-G~n---------nt~~~CpnCGe~l~v~~g~F~s~~g 220 (240)
...|+.|+.... |-. ..=.+|..|+.+|. |.||..+|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~---~~~~~~~g 61 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT---GEYISKDG 61 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS---SCCEEETT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC---CCeEEECC
Confidence 457999998876 311 12258999999986 35755444
No 300
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.92 E-value=22 Score=20.62 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2eou_A 13 SECQECGKIFRH 24 (44)
T ss_dssp CCCTTTCCCCSS
T ss_pred eECCCCCcccCC
Confidence 369999998864
No 301
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.62 E-value=20 Score=29.32 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=28.0
Q ss_pred HHHhhhhhcCCCCCCCccccccccceeecCCCCceeeeeCCC
Q 026283 173 TVANNFVIKGACPACKREFIGSKSQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 173 wWlkRnLIeg~CPvC~~eFtG~nnt~~~CpnCGe~l~v~~g~ 214 (240)
..++|-+--..||.|+..+- ....||.||+.+.+...+
T Consensus 116 ~l~~Rl~~R~~~~~~g~~y~----~~~~pp~~g~~l~~r~DD 153 (206)
T 3sr0_A 116 VVIERLSGRRINPETGEVYH----VKYNPPPPGVKVIQREDD 153 (206)
T ss_dssp HHHHHHHTEEECTTTCCEEE----TTTBCCCTTCCCBCCGGG
T ss_pred HHHHHHhCCccccCCCceee----eeccCCCCCceecccCCC
Confidence 45567666778999998763 445689999988776543
No 302
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.56 E-value=26 Score=23.11 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=10.6
Q ss_pred cceeecCCCCceeeee
Q 026283 196 SQIIRCAGCGNIVWQP 211 (240)
Q Consensus 196 nt~~~CpnCGe~l~v~ 211 (240)
+....||-|+..+..+
T Consensus 55 ~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 55 CGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CSCCCCSSSCCCCCCC
T ss_pred CCCCCCCCCCCcCCcc
Confidence 3456788887776554
No 303
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=26.56 E-value=18 Score=32.03 Aligned_cols=29 Identities=14% Similarity=0.454 Sum_probs=20.8
Q ss_pred cCCCCCCCccccccc--cceeecCCCCceee
Q 026283 181 KGACPACKREFIGSK--SQIIRCAGCGNIVW 209 (240)
Q Consensus 181 eg~CPvC~~eFtG~n--nt~~~CpnCGe~l~ 209 (240)
.-+||.|+.....-. .-+..||.|+-...
T Consensus 24 ~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r 54 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPKCDHHMR 54 (304)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTTCCBCC
T ss_pred HHhhhhccchhhHHHHHHHhCCCCCCCCCCC
Confidence 357999999876542 45677999987643
No 304
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=26.56 E-value=17 Score=26.72 Aligned_cols=13 Identities=31% Similarity=0.933 Sum_probs=10.2
Q ss_pred hcCCCCCCCcccc
Q 026283 180 IKGACPACKREFI 192 (240)
Q Consensus 180 Ieg~CPvC~~eFt 192 (240)
.+-.||+|+.+|+
T Consensus 8 ~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 8 ITVNCPTCGKTVV 20 (68)
T ss_dssp CEEECTTTCCEEE
T ss_pred CcCcCCCCCCccc
Confidence 3457999999987
No 305
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=26.43 E-value=24 Score=20.59 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2em0_A 13 WKCRECDMCFSQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 379999998864
No 306
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.42 E-value=24 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.766 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2eom_A 13 HRCSDCGKFFLQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCCCCCeeCC
Confidence 469999998864
No 307
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=26.04 E-value=20 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.824 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 13 ~C~~C~k~f~~ 23 (42)
T 2epc_A 13 LCGQCGKSFTQ 23 (42)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCcccCC
Confidence 69999998864
No 308
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=25.83 E-value=25 Score=20.58 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ely_A 13 FKCVECGKGFSR 24 (46)
T ss_dssp BCCSSSCCCBSS
T ss_pred cccCccCcccCC
Confidence 369999998874
No 309
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=25.58 E-value=18 Score=20.64 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=8.5
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 12 ~C~~C~k~f~~ 22 (42)
T 2el5_A 12 ECSECGKAFNR 22 (42)
T ss_dssp ECSSSCCEESS
T ss_pred cCCCcChhhCC
Confidence 58888888764
No 310
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=25.55 E-value=37 Score=22.82 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=4.8
Q ss_pred eecCCCCcee
Q 026283 199 IRCAGCGNIV 208 (240)
Q Consensus 199 ~~CpnCGe~l 208 (240)
..||-|+.++
T Consensus 44 ~~CP~C~~~~ 53 (78)
T 1t1h_A 44 KTCPKSQETL 53 (78)
T ss_dssp CBCTTTCCBC
T ss_pred CCCCCCcCCC
Confidence 3455555444
No 311
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.48 E-value=25 Score=20.46 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytr_A 13 YKCNECGKAFSQ 24 (46)
T ss_dssp TCCTTTCCCCSS
T ss_pred cCCCCCCCccCC
Confidence 369999998864
No 312
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.43 E-value=26 Score=20.36 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (47)
T 2epx_A 13 YECIECGKAFIQ 24 (47)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCccCchhCC
Confidence 469999998864
No 313
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.35 E-value=26 Score=20.45 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoq_A 13 FKCDICGKSFCG 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCcCCchhCC
Confidence 369999999864
No 314
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=25.31 E-value=14 Score=32.54 Aligned_cols=26 Identities=23% Similarity=0.620 Sum_probs=19.3
Q ss_pred CCCCCCCccccc--cccceeecCCCCce
Q 026283 182 GACPACKREFIG--SKSQIIRCAGCGNI 207 (240)
Q Consensus 182 g~CPvC~~eFtG--~nnt~~~CpnCGe~ 207 (240)
-+||.|+..... +..-...||.|+..
T Consensus 31 ~kc~~~~~~~y~~~l~~~~~v~p~~~~~ 58 (285)
T 2f9i_B 31 TKCPKCKKIMYTKELAENLNVCFNCDHH 58 (285)
T ss_dssp EECTTTCCEEEHHHHHHTTTBCTTTCCB
T ss_pred HhhHhhCCccchhhhHHhcCcCCCCCCC
Confidence 469999988776 45556778999883
No 315
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.30 E-value=21 Score=20.84 Aligned_cols=11 Identities=36% Similarity=0.929 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (44)
T 2epv_A 14 ECNECGKAFIW 24 (44)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCcccCc
Confidence 69999998864
No 316
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=25.26 E-value=25 Score=20.59 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2emk_A 13 YECKECGKAFSQ 24 (46)
T ss_dssp CBCSSSCCBCSC
T ss_pred eECCCCCchhCC
Confidence 369999999875
No 317
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=25.10 E-value=32 Score=22.74 Aligned_cols=36 Identities=14% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCCCCCcccccc-------c------cceeecCCCCceeeeeCCCcccCC
Q 026283 182 GACPACKREFIGS-------K------SQIIRCAGCGNIVWQPEGDFFSRN 219 (240)
Q Consensus 182 g~CPvC~~eFtG~-------n------nt~~~CpnCGe~l~v~~g~F~s~~ 219 (240)
..|+.|+.....- . ..=.+|-.|+.+|. ++.|+.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~--~~~f~~~~ 51 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI--GQKFMPVE 51 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCT--TSCCEEET
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCC--CCceEEEC
Confidence 3588888877631 1 23357899999884 55564433
No 318
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=25.08 E-value=16 Score=34.05 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=0.7
Q ss_pred CCCCCCcccccc-------c---cceeecCCCCceeeee
Q 026283 183 ACPACKREFIGS-------K---SQIIRCAGCGNIVWQP 211 (240)
Q Consensus 183 ~CPvC~~eFtG~-------n---nt~~~CpnCGe~l~v~ 211 (240)
.||.|+ +.+-+ + .....||.||+.+.+.
T Consensus 339 r~~~~~-~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~ 376 (441)
T 3e20_C 339 KNSEGN-PVITYMTKEQEEKDSTNSFLLDKDTGAEMELV 376 (441)
T ss_dssp ---------CCEECSCTTTCCC-----------------
T ss_pred ECCCCc-eEEEecCccccccccccccccCcccCccceec
Confidence 799995 33211 1 2335899999987643
No 319
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=25.00 E-value=27 Score=25.69 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=6.2
Q ss_pred CCCCCCCcccc
Q 026283 182 GACPACKREFI 192 (240)
Q Consensus 182 g~CPvC~~eFt 192 (240)
..||+|+.+++
T Consensus 58 ~~cP~~~~~l~ 68 (98)
T 1wgm_A 58 QTDPFNRSPLT 68 (98)
T ss_dssp CBCTTTCSBCC
T ss_pred CCCCCCCCCCC
Confidence 45666665554
No 320
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.93 E-value=25 Score=20.54 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2ytn_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCeeCC
Confidence 369999998864
No 321
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=24.93 E-value=24 Score=29.86 Aligned_cols=27 Identities=22% Similarity=0.580 Sum_probs=14.3
Q ss_pred CCCCCCcc-ccccccceeecCCCCceee
Q 026283 183 ACPACKRE-FIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 183 ~CPvC~~e-FtG~nnt~~~CpnCGe~l~ 209 (240)
.||.|+.. |-+--.....|-.||...+
T Consensus 115 ~Cp~Cg~g~fma~h~dR~~CGkC~~t~~ 142 (189)
T 2xzm_9 115 GCPKCGPGIFMAKHYDRHYCGKCHLTLK 142 (189)
T ss_dssp ECSTTCSSCEEEECSSCEEETTTCCCBC
T ss_pred cCCccCCCccccCccCCCccCCceeEEE
Confidence 46666654 5554444445666655543
No 322
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.91 E-value=37 Score=22.99 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=6.2
Q ss_pred eecCCCCceeee
Q 026283 199 IRCAGCGNIVWQ 210 (240)
Q Consensus 199 ~~CpnCGe~l~v 210 (240)
..||-|+.++..
T Consensus 57 ~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 57 VRCPFCSKITRI 68 (88)
T ss_dssp BCCTTTCCCBCC
T ss_pred cCCCCCCCcccc
Confidence 455555555443
No 323
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=24.84 E-value=23 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.419 Sum_probs=21.6
Q ss_pred hhhhcCCCCCCCccccccccce-eecCCCCce
Q 026283 177 NFVIKGACPACKREFIGSKSQI-IRCAGCGNI 207 (240)
Q Consensus 177 RnLIeg~CPvC~~eFtG~nnt~-~~CpnCGe~ 207 (240)
..-|+-.|..|+..|..-..-. ..||+||--
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCc
Confidence 3346667888888887765444 278999854
No 324
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=24.84 E-value=47 Score=22.43 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=9.3
Q ss_pred eecCCCCceeeeeCCC
Q 026283 199 IRCAGCGNIVWQPEGD 214 (240)
Q Consensus 199 ~~CpnCGe~l~v~~g~ 214 (240)
..||.|+..+..++..
T Consensus 53 ~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 53 HTCPTCHQNDVSPDAL 68 (74)
T ss_dssp SCCSSSCCSSCCTTTT
T ss_pred CcCCCCCCcCCCcccc
Confidence 4677776665554443
No 325
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=24.72 E-value=21 Score=21.99 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 26 ~C~~C~k~f~~ 36 (54)
T 1yui_A 26 TCPICYAVIRQ 36 (54)
T ss_dssp ECTTTCCEESS
T ss_pred cCCCCCcccCC
Confidence 69999998864
No 326
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=24.53 E-value=39 Score=28.19 Aligned_cols=24 Identities=25% Similarity=0.880 Sum_probs=17.0
Q ss_pred CCCCCCcccccc--ccceeecCCCCc
Q 026283 183 ACPACKREFIGS--KSQIIRCAGCGN 206 (240)
Q Consensus 183 ~CPvC~~eFtG~--nnt~~~CpnCGe 206 (240)
.||+|+..+..- ....++|-.|..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~ 29 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDR 29 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCc
Confidence 499999876542 345788888865
No 327
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.50 E-value=19 Score=21.10 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2ytp_A 14 ECSECGKAFAR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCcCCcccCC
Confidence 58999988864
No 328
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.44 E-value=19 Score=21.10 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=8.6
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2yto_A 14 KCSDCGKAFTR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECcccCCccCC
Confidence 68899888864
No 329
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.36 E-value=24 Score=23.60 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=7.6
Q ss_pred eecCCCCceeee
Q 026283 199 IRCAGCGNIVWQ 210 (240)
Q Consensus 199 ~~CpnCGe~l~v 210 (240)
..||-|...+..
T Consensus 50 ~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 50 KRCALCRQEIPE 61 (71)
T ss_dssp SBCSSSCCBCCH
T ss_pred CcCcCcCchhCH
Confidence 567777766653
No 330
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.34 E-value=27 Score=20.37 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2epz_A 13 FDCIDCGKAFSD 24 (46)
T ss_dssp BCCTTTCCCBSS
T ss_pred eECCCCCceeCC
Confidence 479999998864
No 331
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.23 E-value=22 Score=20.69 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eow_A 14 KCNECGKAFRA 24 (46)
T ss_dssp ECTTSCCEESS
T ss_pred eccccCChhcC
Confidence 69999998864
No 332
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=24.04 E-value=26 Score=29.70 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=16.4
Q ss_pred CC--CCCCcccccc--------ccceeecCCCCc
Q 026283 183 AC--PACKREFIGS--------KSQIIRCAGCGN 206 (240)
Q Consensus 183 ~C--PvC~~eFtG~--------nnt~~~CpnCGe 206 (240)
.| +.|++++.-. -.....||+|++
T Consensus 143 ~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~ 176 (268)
T 2vl6_A 143 KHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGK 176 (268)
T ss_dssp EEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCC
T ss_pred ECCCCCCCCEEeeeecccCCCcccCCccCCCCCC
Confidence 79 9999765211 123467999998
No 333
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.96 E-value=29 Score=20.18 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=9.3
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 11 ~~C~~C~k~f~~ 22 (43)
T 2yrm_A 11 FFCNECDCRFSE 22 (43)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCeeCC
Confidence 369999998864
No 334
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.94 E-value=22 Score=20.25 Aligned_cols=11 Identities=27% Similarity=0.923 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 13 ~C~~C~k~f~~ 23 (42)
T 2en2_A 13 KCETCGARFVQ 23 (42)
T ss_dssp ECTTTCCEESS
T ss_pred eCCCcChhhCC
Confidence 59999998864
No 335
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.84 E-value=26 Score=20.58 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytm_A 13 YKCMECGKAFGD 24 (46)
T ss_dssp SSBTTTTBCCSS
T ss_pred cCCCCCCchhCC
Confidence 369999998864
No 336
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.80 E-value=23 Score=20.66 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2em3_A 14 ECKVCSKAFTQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCcccCC
Confidence 69999998864
No 337
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.74 E-value=22 Score=20.53 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (44)
T 2emb_A 14 ECSKCQATFNL 24 (44)
T ss_dssp ECTTTCCEESC
T ss_pred ECCCCCCccCC
Confidence 69999998864
No 338
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.73 E-value=23 Score=20.65 Aligned_cols=11 Identities=36% Similarity=1.059 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emi_A 14 ECSECGKAFIQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCcccCC
Confidence 69999998864
No 339
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=23.71 E-value=39 Score=25.45 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=19.1
Q ss_pred hcCCCCCCC------ccccccccceeecCCCCce
Q 026283 180 IKGACPACK------REFIGSKSQIIRCAGCGNI 207 (240)
Q Consensus 180 Ieg~CPvC~------~eFtG~nnt~~~CpnCGe~ 207 (240)
.+=.||.|. .+|.--.+.+--|-+||=.
T Consensus 16 ~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred cceECccccccCcCccccCCCCCCCCcccccCcc
Confidence 445799998 3443323778889999954
No 340
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.66 E-value=24 Score=20.10 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 12 ~C~~C~k~f~~ 22 (41)
T 2ept_A 12 ECQECGKSFRQ 22 (41)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCCCcCC
Confidence 59999998864
No 341
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.66 E-value=26 Score=20.31 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq4_A 13 YNCKECGKSFSR 24 (46)
T ss_dssp CCBTTTTBCCSC
T ss_pred eECCCCCCccCc
Confidence 469999998874
No 342
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.62 E-value=27 Score=20.27 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eop_A 13 HECRECGKSFSF 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred eeCCCCCchhCC
Confidence 369999998864
No 343
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=23.58 E-value=24 Score=20.70 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emj_A 14 ECAECGKSFSI 24 (46)
T ss_dssp ECSSSSCEESS
T ss_pred ECCCCCcccCC
Confidence 59999998864
No 344
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.52 E-value=28 Score=20.35 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.5
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytq_A 13 YGCSECGKAFSS 24 (46)
T ss_dssp CBCSSSCCBCSC
T ss_pred cCCCccChhhCC
Confidence 369999998864
No 345
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.51 E-value=21 Score=20.88 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eml_A 14 ECSVCGKAFSH 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred eCCCcCCccCC
Confidence 59999988864
No 346
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.43 E-value=56 Score=21.49 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=23.3
Q ss_pred hcCCCCCCCcccccc----cc-----ceeecCCCCceeeeeCCCccc
Q 026283 180 IKGACPACKREFIGS----KS-----QIIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~----nn-----t~~~CpnCGe~l~v~~g~F~s 217 (240)
-...|+.|+....+- .+ .=.+|..|+.+|. ++.|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~ 48 (70)
T 2d8z_A 4 GSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLS--GQRFTA 48 (70)
T ss_dssp CCCBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCT--TSCCEE
T ss_pred CCCCCcccCCeeccceEEECccccCCCCCccCCCCCcCC--cCceEe
Confidence 456799999887651 11 1157899999883 455644
No 347
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.36 E-value=16 Score=21.33 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.1
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq3_A 13 YECNQCGKAFSV 24 (46)
T ss_dssp SEETTTTEECSS
T ss_pred eECCCCChhhCC
Confidence 368899888864
No 348
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.29 E-value=29 Score=20.31 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2elz_A 13 YKCEDCGKGYNR 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eeCcccCchhCC
Confidence 369999998864
No 349
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=23.27 E-value=23 Score=34.52 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=18.0
Q ss_pred CCCCCCccccccccceeecCCCC-ceeeeeCC
Q 026283 183 ACPACKREFIGSKSQIIRCAGCG-NIVWQPEG 213 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCG-e~l~v~~g 213 (240)
.| .|+....=-++..-.||.|| ..|....+
T Consensus 558 ~c-~cg~~~~~k~g~~G~CP~Cg~g~l~~r~~ 588 (633)
T 2gai_A 558 KC-SCGKEMRLSFGKYGFYLKCECGKTRSVKN 588 (633)
T ss_dssp EC-TTSCEEEEEEETTEEEEECSSSCCEECCT
T ss_pred hh-hcCceeeecccccccCcccCCCcceeecc
Confidence 58 88865432222333599998 67666554
No 350
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.26 E-value=56 Score=22.85 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=24.3
Q ss_pred hhcCCCCCCCccccccc---------cceeecCCCCceeeeeCCCccc
Q 026283 179 VIKGACPACKREFIGSK---------SQIIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~n---------nt~~~CpnCGe~l~v~~g~F~s 217 (240)
+....|+.|+....|-. -.=.+|..|+.+|. ++.|+.
T Consensus 23 ~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~--~~~f~~ 68 (90)
T 2dar_A 23 KRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMA--YIGFVE 68 (90)
T ss_dssp TCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCS--SSCBEE
T ss_pred CCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCC--CCEeEe
Confidence 44567999999875421 11258999999887 345644
No 351
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.17 E-value=24 Score=20.48 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2yts_A 14 ICNECGKSFIQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCChhhCC
Confidence 69999998864
No 352
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.14 E-value=24 Score=20.65 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eoy_A 14 KCNKCEKTFSC 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECcCCCCcCCC
Confidence 69999998864
No 353
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.12 E-value=21 Score=20.73 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2epw_A 14 KCTECGKAFCW 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred eCCCCCCccCC
Confidence 69999988864
No 354
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.11 E-value=47 Score=22.60 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=4.3
Q ss_pred ecCCCCcee
Q 026283 200 RCAGCGNIV 208 (240)
Q Consensus 200 ~CpnCGe~l 208 (240)
.||-|+.++
T Consensus 51 ~CP~Cr~~~ 59 (81)
T 2csy_A 51 RCYICDQPT 59 (81)
T ss_dssp BCSSSCCBC
T ss_pred cCCCcCccc
Confidence 455554444
No 355
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=22.89 E-value=43 Score=22.91 Aligned_cols=16 Identities=19% Similarity=0.642 Sum_probs=12.6
Q ss_pred ceeecCCCCceeeeeC
Q 026283 197 QIIRCAGCGNIVWQPE 212 (240)
Q Consensus 197 t~~~CpnCGe~l~v~~ 212 (240)
....|+.||+++.+..
T Consensus 17 ~~~~C~~CG~~i~~~~ 32 (49)
T 2l8e_A 17 NLLKCEYCGKYAPAEQ 32 (49)
T ss_dssp SEEECTTTCCEEEGGG
T ss_pred CCCcChhccCcccccc
Confidence 3456999999998764
No 356
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.87 E-value=25 Score=20.44 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2yrj_A 14 RCGECGKAFAQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCCccCC
Confidence 69999998864
No 357
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.84 E-value=24 Score=20.22 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (44)
T 2eof_A 14 ECNECQKAFNT 24 (44)
T ss_dssp ECTTTCCEESC
T ss_pred ECCCCCcccCC
Confidence 69999998864
No 358
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=22.78 E-value=36 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.512 Sum_probs=23.0
Q ss_pred hhcCCCCCCCccccccccceeecCCCCceee
Q 026283 179 VIKGACPACKREFIGSKSQIIRCAGCGNIVW 209 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~nnt~~~CpnCGe~l~ 209 (240)
+.-..|-+|+.. +++-.|...|.+|+-.+-
T Consensus 17 ~~~~~C~~Cg~~-i~~gkq~~kC~dC~~~cH 46 (61)
T 4b6d_A 17 IKPESCVPCGKR-IKFGKLSLKCRDCRVVSH 46 (61)
T ss_dssp CSCEECTTTCCE-ECTTCEEEEESSSSCEEC
T ss_pred cCCcccccccCE-EEEeeEeeECCCCCCeEc
Confidence 334689999765 478889999999986653
No 359
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.62 E-value=31 Score=20.15 Aligned_cols=12 Identities=33% Similarity=0.911 Sum_probs=9.6
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytt_A 13 YQCSECGKSFSG 24 (46)
T ss_dssp TCCSSSCCCCSS
T ss_pred eeCCCCCcccCC
Confidence 469999998864
No 360
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=22.55 E-value=45 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=16.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 026283 134 LGRSFATIFFLWFALSGWLFRILI 157 (240)
Q Consensus 134 lG~wL~tl~~~wll~SGWLvn~~l 157 (240)
-|..++..+++|++++.-.=+.++
T Consensus 40 p~~al~~~~~~w~lG~~~~Qrvi~ 63 (75)
T 3j27_B 40 PGFTIMAAILAYTIGTTHFQRALI 63 (75)
T ss_dssp CTHHHHHHHHHHHSSCSSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHH
Confidence 456677777889888755555554
No 361
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=22.53 E-value=32 Score=28.57 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=16.7
Q ss_pred cCCCCCCCccccccccceeecCC
Q 026283 181 KGACPACKREFIGSKSQIIRCAG 203 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~Cpn 203 (240)
-..||.|+-++ -|++....|.+
T Consensus 78 l~~CP~C~G~l-~y~~~~Y~C~G 99 (160)
T 2riq_A 78 LLPCEECSGQL-VFKSDAYYCTG 99 (160)
T ss_dssp ECCCTTTCCCE-EEETTEEEECC
T ss_pred CCCCCCCCCEE-EEeCCeEEECC
Confidence 36899999544 48888888874
No 362
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.30 E-value=26 Score=20.44 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2en3_A 14 QCKECGMNFSW 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred eCcccChhhCC
Confidence 69999998864
No 363
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.07 E-value=57 Score=24.76 Aligned_cols=41 Identities=12% Similarity=0.400 Sum_probs=26.3
Q ss_pred hcCCCCCCCccccccc-----c-----ceeecCCCCceeeeeCCCcccCCC
Q 026283 180 IKGACPACKREFIGSK-----S-----QIIRCAGCGNIVWQPEGDFFSRNG 220 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~n-----n-----t~~~CpnCGe~l~v~~g~F~s~~g 220 (240)
-...|+.|+....+-. + .=.+|..|+.+|.-....||.++|
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg 110 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 110 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSS
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECC
Confidence 3467999998776531 1 125899999998733345656544
No 364
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.05 E-value=23 Score=20.66 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytj_A 14 ICAECGKAFTI 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCChhhCC
Confidence 68999988864
No 365
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=21.98 E-value=61 Score=25.14 Aligned_cols=34 Identities=29% Similarity=0.629 Sum_probs=24.2
Q ss_pred cCCCCCCCcccc-ccc-----------cceeecCCCCceeeeeCCC
Q 026283 181 KGACPACKREFI-GSK-----------SQIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 181 eg~CPvC~~eFt-G~n-----------nt~~~CpnCGe~l~v~~g~ 214 (240)
..-|..|+.-++ |.| .-+.+|-+||..--++-+.
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEECC-
T ss_pred HHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEccCc
Confidence 346999988765 222 2467899999998888764
No 366
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=21.95 E-value=32 Score=27.00 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=19.7
Q ss_pred cCCCCCCCccccc------------------cccceeecCCCCceeeee
Q 026283 181 KGACPACKREFIG------------------SKSQIIRCAGCGNIVWQP 211 (240)
Q Consensus 181 eg~CPvC~~eFtG------------------~nnt~~~CpnCGe~l~v~ 211 (240)
+..||+|...|.- +++....||-|..++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4578888766642 122334789998887654
No 367
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.83 E-value=24 Score=20.63 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em7_A 14 KCEECGKGFIC 24 (46)
T ss_dssp ECSSSCCEESC
T ss_pred cCCCccchhCC
Confidence 69999988864
No 368
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.66 E-value=27 Score=20.43 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em4_A 14 ECIECGKAFKT 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCCccCC
Confidence 69999998864
No 369
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=21.61 E-value=40 Score=22.89 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=8.3
Q ss_pred CCCCCCCcccc
Q 026283 182 GACPACKREFI 192 (240)
Q Consensus 182 g~CPvC~~eFt 192 (240)
+.||+++.+++
T Consensus 39 ~~cP~t~~~L~ 49 (61)
T 2bay_A 39 GNDPITNEPLS 49 (61)
T ss_dssp SBCTTTCCBCC
T ss_pred CCCcCCcCCCC
Confidence 56888887765
No 370
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=21.52 E-value=21 Score=35.03 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=4.4
Q ss_pred ceeecCCCCceeeeeCCC
Q 026283 197 QIIRCAGCGNIVWQPEGD 214 (240)
Q Consensus 197 t~~~CpnCGe~l~v~~g~ 214 (240)
+...||.||..|....+.
T Consensus 615 ~~~~CP~Cg~~l~~~~~~ 632 (659)
T 1i7d_A 615 RGIVAPGSGGSADKKKAA 632 (659)
T ss_dssp TTCCCC------------
T ss_pred cCCCCCCCCCeeEEecCc
Confidence 456799999998776553
No 371
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.50 E-value=49 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.561 Sum_probs=23.0
Q ss_pred hcCCCCCCCcccc-cc----cc-----ceeecCCCCceeeeeCCCccc
Q 026283 180 IKGACPACKREFI-GS----KS-----QIIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 180 Ieg~CPvC~~eFt-G~----nn-----t~~~CpnCGe~l~v~~g~F~s 217 (240)
....|+.|+.... +- .+ .=.+|..|+.+|. .+.|+.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~ 53 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT--PGGHAE 53 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCC--TTSCEE
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccC--CCceEe
Confidence 3467999988776 21 11 2257889998886 345544
No 372
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.47 E-value=27 Score=20.32 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ep3_A 14 RCAECGKAFTD 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCCchhCC
Confidence 69999998874
No 373
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.43 E-value=38 Score=24.89 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=6.7
Q ss_pred ccccceeecCCCC
Q 026283 193 GSKSQIIRCAGCG 205 (240)
Q Consensus 193 G~nnt~~~CpnCG 205 (240)
|.-+++..||.|+
T Consensus 62 G~~~~~~~C~~C~ 74 (104)
T 2ctt_A 62 GPFVMRSTCRRCG 74 (104)
T ss_dssp TTEEEEEECSSSS
T ss_pred CCEEEEEECCcCC
Confidence 3334455666664
No 374
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.35 E-value=24 Score=20.56 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2yu8_A 14 KCNECGKVFTQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCcCCchhCC
Confidence 69999988864
No 375
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=21.28 E-value=36 Score=24.05 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=17.9
Q ss_pred CCCCCCccccccccceeecCCCCcee
Q 026283 183 ACPACKREFIGSKSQIIRCAGCGNIV 208 (240)
Q Consensus 183 ~CPvC~~eFtG~nnt~~~CpnCGe~l 208 (240)
.|=.|+..|+. .+.-+||+|++..
T Consensus 17 ~C~~C~~~~~~--~~~y~C~~C~~~F 40 (59)
T 1z60_A 17 FCYGCQGELKD--QHVYVCAVCQNVF 40 (59)
T ss_dssp EETTTTEECTT--SEEECCTTTTCCB
T ss_pred cccccCcccCC--CccEECCccCcCc
Confidence 59999999963 2346899998764
No 376
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.23 E-value=21 Score=20.55 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=9.3
Q ss_pred CCCCCCCccccc
Q 026283 182 GACPACKREFIG 193 (240)
Q Consensus 182 g~CPvC~~eFtG 193 (240)
-.|+.|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2eoj_A 13 YECCECGKVFSR 24 (44)
T ss_dssp CEETTTTEECSS
T ss_pred eeCCCCCCccCC
Confidence 369999988864
No 377
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=21.17 E-value=43 Score=30.61 Aligned_cols=30 Identities=30% Similarity=0.538 Sum_probs=25.0
Q ss_pred cCCCCCCCccccccccceeecCCCCceeee
Q 026283 181 KGACPACKREFIGSKSQIIRCAGCGNIVWQ 210 (240)
Q Consensus 181 eg~CPvC~~eFtG~nnt~~~CpnCGe~l~v 210 (240)
-..|-.|+.-..|+..|-.+|..||-.+-.
T Consensus 220 pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk 249 (463)
T 3cxl_A 220 PHWCEYCANFMWGLIAQGVKCADCGLNVHK 249 (463)
T ss_dssp CCBCTTTCCBCCSSSCCEEEETTTCCEECH
T ss_pred CCcchhhhhhhhhHHhcCeeccccCccccc
Confidence 356889999999999999999999876643
No 378
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.16 E-value=28 Score=20.18 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ytf_A 14 ECSECQKAFNT 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCcccCC
Confidence 69999998864
No 379
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=27 Score=20.25 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eor_A 14 NCEECGKAFIH 24 (46)
T ss_dssp ECTTTCCEESS
T ss_pred cCCCCCCCcCC
Confidence 69999998864
No 380
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.92 E-value=62 Score=26.32 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=30.7
Q ss_pred hhcCCCCCCCccccccccceeecCCCCceeeeeCCCc
Q 026283 179 VIKGACPACKREFIGSKSQIIRCAGCGNIVWQPEGDF 215 (240)
Q Consensus 179 LIeg~CPvC~~eFtG~nnt~~~CpnCGe~l~v~~g~F 215 (240)
.-+-.|..|...|.=+-|+-.+|..|..-|=..=|.+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~ 102 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA 102 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccccc
Confidence 3588999999999999999999999988776655544
No 381
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=20.77 E-value=37 Score=25.05 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=5.4
Q ss_pred CCCCCCCcccc
Q 026283 182 GACPACKREFI 192 (240)
Q Consensus 182 g~CPvC~~eFt 192 (240)
..||+|+.+++
T Consensus 64 ~~cP~~~~~l~ 74 (100)
T 2kre_A 64 PTDPFNRQTLT 74 (100)
T ss_dssp SBCSSSCCBCC
T ss_pred CCCCCCCCCCC
Confidence 44555555443
No 382
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=20.75 E-value=26 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2el4_A 14 GCSQCAKTFSL 24 (46)
T ss_dssp ECSSSSCEESS
T ss_pred ECCCCCchhCC
Confidence 69999988864
No 383
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=20.74 E-value=51 Score=21.06 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=9.8
Q ss_pred CCCchHHHHHHHH
Q 026283 132 TPLGRSFATIFFL 144 (240)
Q Consensus 132 T~lG~wL~tl~~~ 144 (240)
..+|||+..||++
T Consensus 4 ~~~~cwilvLfva 16 (30)
T 1skh_A 4 SKIGSWILVLFVA 16 (30)
T ss_dssp TTTTTHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 4589999877763
No 384
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.69 E-value=26 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.754 Sum_probs=9.0
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2emp_A 14 MCNECGKAFSV 24 (46)
T ss_dssp ECSSSCCEESC
T ss_pred ECCCCCchhCC
Confidence 69999998864
No 385
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.66 E-value=57 Score=21.48 Aligned_cols=36 Identities=22% Similarity=0.541 Sum_probs=22.9
Q ss_pred hcCCCCCCCcccccc--c----c-----ceeecCCCCceeeeeCCCccc
Q 026283 180 IKGACPACKREFIGS--K----S-----QIIRCAGCGNIVWQPEGDFFS 217 (240)
Q Consensus 180 Ieg~CPvC~~eFtG~--n----n-----t~~~CpnCGe~l~v~~g~F~s 217 (240)
-...|+.|+.....- . + .=.+|..|+.+|. .+.|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~ 50 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG--SRSFVP 50 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTT--TSCEEE
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCC--CCccCC
Confidence 356899999887732 1 1 1157899998875 345644
No 386
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.53 E-value=26 Score=20.43 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2emy_A 14 ECHECGKAFSR 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred CCCCCCcccCc
Confidence 69999988864
No 387
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=20.46 E-value=52 Score=22.87 Aligned_cols=10 Identities=30% Similarity=1.168 Sum_probs=5.9
Q ss_pred CCCCCCcccc
Q 026283 183 ACPACKREFI 192 (240)
Q Consensus 183 ~CPvC~~eFt 192 (240)
.|+.|++.|.
T Consensus 36 ~C~~C~~~f~ 45 (124)
T 1ubd_C 36 VCAECGKAFV 45 (124)
T ss_dssp ECTTTCCEES
T ss_pred ECCCCCchhC
Confidence 4666666664
No 388
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.32 E-value=30 Score=20.23 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=9.3
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em5_A 14 QCHECGRGFTL 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCcCCCccCC
Confidence 69999999864
No 389
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=20.31 E-value=45 Score=21.85 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=10.8
Q ss_pred eeecCCCCceeeee
Q 026283 198 IIRCAGCGNIVWQP 211 (240)
Q Consensus 198 ~~~CpnCGe~l~v~ 211 (240)
...||-||+.+.+.
T Consensus 9 ~~~C~~C~~~i~~~ 22 (39)
T 2i5o_A 9 QVPCEKCGSLVPVW 22 (39)
T ss_dssp EEECTTTCCEEEGG
T ss_pred CcccccccCcCCcc
Confidence 45799999987764
No 390
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.12 E-value=26 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=8.8
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2eq0_A 14 KCHECGKVFRR 24 (46)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCCCchhCC
Confidence 58999988864
No 391
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.08 E-value=31 Score=20.19 Aligned_cols=11 Identities=27% Similarity=0.824 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q 026283 183 ACPACKREFIG 193 (240)
Q Consensus 183 ~CPvC~~eFtG 193 (240)
.|+.|++.|.-
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2em2_A 14 KCKECGKAFRQ 24 (46)
T ss_dssp ECSSSCCEESS
T ss_pred ECCcCCchhCC
Confidence 69999998864
Done!