BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026284
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 86/131 (65%), Gaps = 6/131 (4%)
Query: 31 VEYMRDFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCR 84
+Y+RD + T+G+K T R C+ K C L+DT+LDWED+LP ++ A+E R
Sbjct: 146 TQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASR 205
Query: 85 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGV 144
AD+ + LGTSLQI P+ NLPL + R GG++VIVNLQ T D+ A L +H VD+V+ +
Sbjct: 206 NADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRL 265
Query: 145 MRHLNLWIPPY 155
M+HL L IP +
Sbjct: 266 MKHLGLEIPAW 276
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 6/131 (4%)
Query: 31 VEYMRDFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCR 84
+Y+RD + T+G+K T R C+ K C L+DT+LDWED+LP ++ A+E R
Sbjct: 146 TQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASR 205
Query: 85 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGV 144
AD+ + LGTSLQI P+ NLPL + R GG++VIVNLQ T D+ A L +H VD+V+ +
Sbjct: 206 NADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRL 265
Query: 145 MRHLNLWIPPY 155
M HL L IP +
Sbjct: 266 MEHLGLEIPAW 276
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 51 CSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLR 110
C D C S ++ ++ + + LP + A A +++ LG+SL + PA LPL ++R
Sbjct: 148 CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR 205
Query: 111 GGGKIVIVNLQQTPKDKKASL 131
GGK+VIVNL +TP D A+L
Sbjct: 206 SGGKLVIVNLGETPFDDIATL 226
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 51 CSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLR 110
C D C S ++ ++ + + LP + A A +++ LG+SL + PA LPL ++R
Sbjct: 148 CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR 205
Query: 111 GGGKIVIVNLQQTPKDKKASL 131
GGK+VIVNL +TP D A+L
Sbjct: 206 SGGKLVIVNLGETPFDDIATL 226
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 51 CSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLR 110
C D C S ++ ++ + + LP + A A +++ LG+SL + PA LPL ++R
Sbjct: 148 CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVR 205
Query: 111 GGGKIVIVNLQQTPKDKKASL 131
GGK+VIVNL +TP D A+L
Sbjct: 206 SGGKLVIVNLGETPFDDIATL 226
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 37 FEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL 96
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 142 FEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSA 199
Query: 97 QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 200 VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 251
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 37 FEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL 96
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 131 FEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSA 188
Query: 97 QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 189 VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 37 FEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL 96
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 131 FEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSA 188
Query: 97 QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 189 VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 37 FEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL 96
FE+E+ +C KCGS L+ V+ + + LPP ++ A ADV++ GTS
Sbjct: 131 FEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSA 188
Query: 97 QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 189 VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 37 FEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL 96
FE+E+ +C KCGS L+ V+ + LPP ++ A ADV++ GTS
Sbjct: 131 FEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSA 188
Query: 97 QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 189 VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 37 FEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL 96
FE+E+ +C KCGS L+ V+ + LPP ++ A ADV++ GTS
Sbjct: 131 FEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSA 188
Query: 97 QITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148
+ PA +LPL + GG I+ +N +TP A + +V+ ++RH+
Sbjct: 189 VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 32 EYMRDFEIETIGMKKTPRRCSDVKCGSR-LKDTVLDWEDALPPVEMNPAEENCRMADVVL 90
E++ DF K RC KCGS +K V+ + + LP + A E + D +
Sbjct: 137 EFVEDFN------KGEIPRCR--KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFM 188
Query: 91 CLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD 126
+G+SL + PA LP + + G K++IVN + T D
Sbjct: 189 VVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD 224
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 41 TIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP 100
+I ++K PR C + CG L+ V+ + + L P + + D+ L +GTS + P
Sbjct: 167 SIPVEKLPR-CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 225
Query: 101 ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 141
A + G + N + TP + P +
Sbjct: 226 AAXFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTL 266
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 41 TIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP 100
+I ++K PR C + CG L+ V+ + + L P + + D+ L +GTS + P
Sbjct: 171 SIPVEKLPR-CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 229
Query: 101 ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 141
A + G + N + TP + P +
Sbjct: 230 AAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTL 270
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 41 TIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP 100
+I ++K PR C + CG L+ V+ + + L P + + D+ L +GTS + P
Sbjct: 169 SIPVEKLPR-CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 227
Query: 101 ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 141
A + G + N + TP + P +
Sbjct: 228 AAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTL 268
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 41 TIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP 100
+I ++K PR C + CG L+ V+ + + L P + + D+ L +GTS + P
Sbjct: 163 SIPVEKLPR-CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 221
Query: 101 ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 141
A + G + N + TP + P +
Sbjct: 222 AAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTL 262
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 41 TIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP 100
+I ++K PR C + CG L+ V+ + + L P + + D+ L +GTS + P
Sbjct: 167 SIPVEKLPR-CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYP 225
Query: 101 ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 141
A + G + N + TP + P +
Sbjct: 226 AAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTL 266
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 56 CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKI 115
CG K ++ + + + + AEE D++L +GTS ++ A NL + + KI
Sbjct: 162 CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKI 221
Query: 116 VIVNLQQTPKDKKAS 130
V +N+ +T K S
Sbjct: 222 VEINISKTYITNKXS 236
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 44 MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACN 103
M + P C CG K ++ + + + + AEE D++L +GTS ++ A N
Sbjct: 178 MHQLPPECP---CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATN 234
Query: 104 LPLKSLRGGGKIVIVNLQQTPKDKKAS 130
L + + KIV +N+ +T K S
Sbjct: 235 LCHFACKKKKKIVEINISKTYITNKMS 261
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 73 PVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLV 132
P+ M+ MAD+ + +GTS + PA ++ G V +NL+ + + +
Sbjct: 155 PLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEK 214
Query: 133 VHAPVDKVI 141
+ P +V+
Sbjct: 215 YYGPASQVV 223
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 32 EYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLC 91
EY + E I + TP+ C D C S +K ++ + ++LP + + + D++L
Sbjct: 170 EYPLSWMKEKIFSEVTPK-CED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLV 226
Query: 92 LGTSLQITPACNL 104
+GTSLQ+ P +L
Sbjct: 227 MGTSLQVQPFASL 239
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 32 EYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLC 91
EY + E I + TP+ C D C S +K ++ + ++LP + + + D++L
Sbjct: 170 EYPLSWMKEKIFSEVTPK-CED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLV 226
Query: 92 LGTSLQITPACNL 104
+GTSLQ+ P +L
Sbjct: 227 MGTSLQVQPFASL 239
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 54 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQ 97
K G L++ +L EDAL P NP EE CR CLG SL+
Sbjct: 293 AKLGISLEEMLLVTEDALHPEPYNP-EEICR------CLGISLE 329
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 60 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNL 104
LK + + +ALP E+ D+++C+GTSL++ P +
Sbjct: 368 LKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEI 412
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 60 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP 100
LK + + +ALP E+ D+++C+GTSL++ P
Sbjct: 230 LKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAP 270
>pdb|3OVB|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
pdb|3OVB|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 441
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 149 NLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRP 208
N W+ + +D+F + +++S+ ++ L +G + S E+ +++ P
Sbjct: 51 NTWLKGSLEIDVFLLFPEEFSKEELRER----GLEIGKA--------VLDSYEIRYAEHP 98
Query: 209 DLKTAILNKQP-----FKLKRRKQITSAMIRTPL 237
+ + + +KLK K I SA+ RTP
Sbjct: 99 YVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPF 132
>pdb|3OUY|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine At
Position 76 Of Trna
pdb|3OV7|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
pdb|3OV7|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 441
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 149 NLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRP 208
N W+ + +D+F + +++S+ ++ L +G + S E+ +++ P
Sbjct: 51 NTWLKGSLEIDVFLLFPEEFSKEELRER----GLEIGKA--------VLDSYEIRYAEHP 98
Query: 209 DLKTAILNKQP-----FKLKRRKQITSAMIRTPL 237
+ + + +KLK K I SA+ RTP
Sbjct: 99 YVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPF 132
>pdb|3OVS|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
pdb|3OVS|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 441
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 149 NLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRP 208
N W+ + +D+F + +++S+ ++ L +G + S E+ +++ P
Sbjct: 51 NTWLKGSLEIDVFLLFPEEFSKEELRER----GLEIGKA--------VLDSYEIRYAEHP 98
Query: 209 DLKTAILNKQP-----FKLKRRKQITSAMIRTPL 237
+ + + +KLK K I SA+ RTP
Sbjct: 99 YVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPF 132
>pdb|3OVA|A Chain A, How The Cca-Adding Enzyme Selects Adenine Over Cytosine In
Position 76 Of Trna
Length = 435
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 149 NLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRP 208
N W+ + +D+F + +++S+ ++ L +G + S E+ +++ P
Sbjct: 49 NTWLKGSLEIDVFLLFPEEFSKEELRER----GLEIGKA--------VLDSYEIRYAEHP 96
Query: 209 DLKTAILNKQP-----FKLKRRKQITSAMIRTPL 237
+ + + +KLK K I SA+ RTP
Sbjct: 97 YVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPF 130
>pdb|1UET|A Chain A, Divergent Evolutions Of Trinucleotide Polymerization
Revealed By An Archaeal Cca-Adding Enzyme Structure
pdb|1UEU|A Chain A, Divergent Evolutions Of Trinucleotide Polymerization
Revealed By An Archaeal Cca-Adding Enzyme Structure
pdb|1UEV|A Chain A, Divergent Evolutions Of Trinucleotide Polymerization
Revealed By An Archaeal Cca-Adding Enzyme Structure
pdb|1R89|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide Complexes
pdb|1R8A|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide Complexes
pdb|1R8B|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide
pdb|1R8C|A Chain A, Crystal Structures Of An Archaeal Class I Cca-Adding
Enzyme And Its Nucleotide
pdb|1SZ1|A Chain A, Mechanism Of Cca-Adding Enzymes Specificity Revealed By
Crystal Structures Of Ternary Complexes
pdb|1SZ1|B Chain B, Mechanism Of Cca-Adding Enzymes Specificity Revealed By
Crystal Structures Of Ternary Complexes
pdb|1TFW|A Chain A, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFW|B Chain B, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFW|C Chain C, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFW|D Chain D, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|A Chain A, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|B Chain B, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|C Chain C, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|1TFY|D Chain D, How Cca Is Added To The 3' End Of Immature Trna Without
The Use Of An Oligonucleotide Template
pdb|2DR5|A Chain A, Complex Structure Of Cca Adding Enzyme With Mini-Helix
Lacking Cca
pdb|2DR7|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminidc
pdb|2DR8|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminidc And
Ctp
pdb|2DR9|A Chain A, Complex Structure Of Cca-adding Enzyme With Trnaminidcc
pdb|2DRA|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminidcc
And Atp
pdb|2DRB|A Chain A, Complex Structure Of Cca-Adding Enzyme With Trnaminicca
pdb|2DVI|A Chain A, Complex Structure Of Cca-Adding Enzyme, Mini-Dcc And Ctp
pdb|2ZH1|A Chain A, Complex Structure Of Afcca With Trnaminida
pdb|2ZH2|A Chain A, Complex Structure Of Afcca With Trnaminidac
pdb|2ZH3|A Chain A, Complex Structure Of Afcca With Trnaminidca
pdb|2ZH4|A Chain A, Complex Structure Of Afcca With Trnaminidcg
pdb|2ZH5|A Chain A, Complex Structure Of Afcca With Trnaminidcu
pdb|2ZH6|A Chain A, Complex Structure Of Afcca With Trnaminidcu And Atp
pdb|2ZH8|A Chain A, Complex Structure Of Afcca With Trnaminidgc
pdb|2ZH9|A Chain A, Complex Structure Of Afcca With Trnaminidu
pdb|2ZHA|A Chain A, Complex Structure Of Afcca With Trnaminidu And Ctp
pdb|3OUY|B Chain B, How The Cca-Adding Enzyme Selects Adenine Over Cytosine At
Position 76 Of Trna
Length = 437
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 149 NLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRP 208
N W+ + +D+F + +++S+ ++ L +G + S E+ +++ P
Sbjct: 51 NTWLKGSLEIDVFLLFPEEFSKEELRER----GLEIGKA--------VLDSYEIRYAEHP 98
Query: 209 DLKTAILNKQP-----FKLKRRKQITSAMIRTPL 237
+ + + +KLK K I SA+ RTP
Sbjct: 99 YVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPF 132
>pdb|2ZH7|A Chain A, Complex Structure Of Afcca With Trnaminidg
pdb|2ZHB|A Chain A, Complex Structure Of Afcca With Trnaminiduc
Length = 436
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 149 NLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRP 208
N W+ + +D+F + +++S+ ++ L +G + S E+ +++ P
Sbjct: 50 NTWLKGSLEIDVFLLFPEEFSKEELRER----GLEIGKA--------VLDSYEIRYAEHP 97
Query: 209 DLKTAILNKQP-----FKLKRRKQITSAMIRTPL 237
+ + + +KLK K I SA+ RTP
Sbjct: 98 YVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPF 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,827,815
Number of Sequences: 62578
Number of extensions: 261518
Number of successful extensions: 464
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 34
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)