Query 026284
Match_columns 240
No_of_seqs 168 out of 1211
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14138 NAD-dependent deacety 100.0 5.2E-35 1.1E-39 258.4 14.6 138 4-150 106-243 (244)
2 KOG1905 Class IV sirtuins (SIR 100.0 6.3E-36 1.4E-40 265.8 8.8 209 4-230 135-350 (353)
3 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.1E-33 2.5E-38 252.0 12.6 135 4-141 105-260 (260)
4 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 3.5E-32 7.5E-37 239.2 12.6 130 5-144 104-235 (235)
5 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 7.7E-32 1.7E-36 232.8 12.1 124 5-136 83-206 (206)
6 PTZ00408 NAD-dependent deacety 100.0 2.7E-31 5.9E-36 234.5 13.3 129 4-148 104-235 (242)
7 PTZ00409 Sir2 (Silent Informat 100.0 2.8E-31 6.1E-36 237.9 13.5 139 4-149 124-263 (271)
8 PRK00481 NAD-dependent deacety 100.0 3.5E-31 7.6E-36 233.4 13.6 132 4-148 109-240 (242)
9 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 3.7E-31 8E-36 230.8 12.4 123 4-136 100-222 (222)
10 PRK05333 NAD-dependent deacety 100.0 1.2E-30 2.6E-35 235.3 15.1 145 4-151 115-280 (285)
11 COG0846 SIR2 NAD-dependent pro 100.0 5.1E-31 1.1E-35 233.4 10.3 139 3-150 108-247 (250)
12 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 6.6E-30 1.4E-34 222.6 12.0 129 4-145 96-224 (224)
13 cd01411 SIR2H SIR2H: Uncharact 100.0 2E-29 4.3E-34 220.3 10.1 120 4-140 105-224 (225)
14 cd01407 SIR2-fam SIR2 family o 100.0 6.1E-29 1.3E-33 215.9 12.4 123 4-136 96-218 (218)
15 PTZ00410 NAD-dependent SIR2; P 100.0 2.6E-28 5.6E-33 224.6 12.3 136 5-151 135-325 (349)
16 KOG2682 NAD-dependent histone 99.9 5.3E-26 1.1E-30 197.6 7.7 138 4-151 139-281 (314)
17 cd00296 SIR2 SIR2 superfamily 99.9 2.9E-25 6.4E-30 191.9 12.0 119 6-136 102-222 (222)
18 KOG2683 Sirtuin 4 and related 99.9 1.7E-25 3.7E-30 194.2 8.0 138 3-143 143-304 (305)
19 KOG2684 Sirtuin 5 and related 99.9 2.4E-23 5.2E-28 192.5 9.2 142 7-159 193-352 (412)
20 PF02146 SIR2: Sir2 family; I 99.9 1.8E-23 4E-28 176.0 7.2 87 4-100 92-178 (178)
21 PF00205 TPP_enzyme_M: Thiamin 97.1 0.002 4.3E-08 51.5 7.1 67 77-144 69-137 (137)
22 PRK07524 hypothetical protein; 95.7 0.021 4.5E-07 55.7 6.1 74 77-150 255-330 (535)
23 PRK08322 acetolactate synthase 95.7 0.032 6.8E-07 54.5 7.3 69 78-149 255-325 (547)
24 PRK07418 acetolactate synthase 95.7 0.028 6.1E-07 55.9 6.9 71 78-150 283-355 (616)
25 PRK08979 acetolactate synthase 95.6 0.03 6.5E-07 55.2 6.9 71 78-150 265-337 (572)
26 PRK07979 acetolactate synthase 95.6 0.029 6.3E-07 55.3 6.6 70 78-149 265-336 (574)
27 CHL00099 ilvB acetohydroxyacid 95.5 0.046 9.9E-07 54.1 7.7 70 78-149 276-347 (585)
28 TIGR01504 glyox_carbo_lig glyo 95.5 0.036 7.7E-07 55.0 6.9 69 78-148 262-332 (588)
29 PRK06882 acetolactate synthase 95.5 0.039 8.4E-07 54.3 7.1 70 78-149 265-336 (574)
30 PRK07789 acetolactate synthase 95.4 0.046 1E-06 54.4 7.5 70 78-149 290-361 (612)
31 PRK06154 hypothetical protein; 95.3 0.051 1.1E-06 53.6 7.3 69 78-150 273-343 (565)
32 PRK06456 acetolactate synthase 95.3 0.046 1E-06 53.7 6.9 71 78-149 266-338 (572)
33 PRK09107 acetolactate synthase 95.3 0.049 1.1E-06 54.1 7.1 70 78-149 273-344 (595)
34 TIGR02418 acolac_catab acetola 95.3 0.056 1.2E-06 52.8 7.4 69 78-149 255-325 (539)
35 PRK06466 acetolactate synthase 95.3 0.049 1.1E-06 53.7 7.0 70 78-149 265-336 (574)
36 PRK08527 acetolactate synthase 95.2 0.052 1.1E-06 53.4 7.0 70 78-149 262-333 (563)
37 PRK06725 acetolactate synthase 95.1 0.056 1.2E-06 53.4 7.0 70 78-149 273-344 (570)
38 PRK08199 thiamine pyrophosphat 95.1 0.052 1.1E-06 53.3 6.6 78 78-155 263-343 (557)
39 PLN02470 acetolactate synthase 95.0 0.066 1.4E-06 52.9 7.2 70 78-149 272-343 (585)
40 PRK05858 hypothetical protein; 95.0 0.089 1.9E-06 51.5 7.9 79 67-149 244-324 (542)
41 PRK08266 hypothetical protein; 94.9 0.048 1E-06 53.2 5.7 69 78-149 256-325 (542)
42 PRK06112 acetolactate synthase 94.9 0.08 1.7E-06 52.2 7.2 70 78-149 277-347 (578)
43 PRK11269 glyoxylate carboligas 94.9 0.075 1.6E-06 52.6 7.1 70 78-149 263-334 (591)
44 PRK06965 acetolactate synthase 94.8 0.069 1.5E-06 52.9 6.7 71 78-149 280-352 (587)
45 TIGR03254 oxalate_oxc oxalyl-C 94.8 0.096 2.1E-06 51.4 7.6 70 79-149 259-330 (554)
46 PRK08327 acetolactate synthase 94.8 0.071 1.5E-06 52.6 6.7 68 79-150 273-345 (569)
47 PRK08978 acetolactate synthase 94.8 0.075 1.6E-06 52.0 6.7 69 78-148 255-325 (548)
48 PRK07525 sulfoacetaldehyde ace 94.7 0.074 1.6E-06 52.6 6.6 73 78-150 259-334 (588)
49 PRK08611 pyruvate oxidase; Pro 94.7 0.085 1.8E-06 52.1 6.9 66 78-150 260-327 (576)
50 PRK06048 acetolactate synthase 94.6 0.091 2E-06 51.6 6.9 71 78-150 266-338 (561)
51 TIGR00118 acolac_lg acetolacta 94.6 0.085 1.8E-06 51.7 6.7 70 78-149 260-331 (558)
52 PRK07282 acetolactate synthase 94.5 0.094 2E-06 51.7 6.8 70 78-149 269-340 (566)
53 PRK08155 acetolactate synthase 94.5 0.11 2.4E-06 51.0 7.3 70 78-149 270-341 (564)
54 PRK06276 acetolactate synthase 94.5 0.12 2.5E-06 51.2 7.4 70 78-149 262-333 (586)
55 PRK09259 putative oxalyl-CoA d 94.4 0.14 3.1E-06 50.4 7.8 69 80-149 267-337 (569)
56 COG0028 IlvB Thiamine pyrophos 94.3 0.1 2.2E-06 51.6 6.6 71 77-150 258-330 (550)
57 TIGR03457 sulphoacet_xsc sulfo 94.3 0.11 2.3E-06 51.3 6.7 72 78-149 255-329 (579)
58 PRK08273 thiamine pyrophosphat 94.3 0.12 2.5E-06 51.4 6.9 68 78-150 265-334 (597)
59 PRK06546 pyruvate dehydrogenas 94.3 0.1 2.3E-06 51.5 6.6 65 78-150 258-324 (578)
60 TIGR02720 pyruv_oxi_spxB pyruv 94.3 0.11 2.3E-06 51.4 6.6 69 78-150 257-327 (575)
61 PRK08617 acetolactate synthase 94.2 0.12 2.6E-06 50.6 6.8 68 79-149 262-331 (552)
62 PRK07064 hypothetical protein; 93.9 0.15 3.2E-06 49.8 6.6 69 78-149 257-327 (544)
63 TIGR00173 menD 2-succinyl-5-en 93.9 0.12 2.6E-06 49.2 5.9 67 79-149 269-337 (432)
64 KOG1185 Thiamine pyrophosphate 93.5 0.16 3.4E-06 49.5 5.8 70 81-151 272-344 (571)
65 PRK09124 pyruvate dehydrogenas 93.2 0.22 4.8E-06 49.0 6.7 64 79-149 259-324 (574)
66 PRK07710 acetolactate synthase 93.0 0.21 4.6E-06 49.2 6.1 71 78-150 274-346 (571)
67 PRK07092 benzoylformate decarb 92.1 0.31 6.8E-06 47.5 6.0 72 77-149 264-336 (530)
68 COG3962 Acetolactate synthase 91.9 0.39 8.6E-06 46.7 6.2 76 78-154 288-364 (617)
69 PLN02573 pyruvate decarboxylas 91.8 0.32 7E-06 48.2 5.8 69 78-149 284-352 (578)
70 PRK06457 pyruvate dehydrogenas 90.9 0.59 1.3E-05 45.8 6.6 59 78-143 252-312 (549)
71 TIGR03393 indolpyr_decarb indo 90.7 0.22 4.7E-06 48.7 3.3 69 78-149 265-335 (539)
72 PLN00022 electron transfer fla 90.5 0.53 1.2E-05 44.2 5.6 60 85-149 293-353 (356)
73 PRK03363 fixB putative electro 90.4 0.58 1.3E-05 43.2 5.6 59 86-149 253-312 (313)
74 PRK11916 electron transfer fla 90.2 0.6 1.3E-05 43.1 5.6 59 86-149 252-311 (312)
75 COG2025 FixB Electron transfer 90.0 0.76 1.6E-05 42.5 6.0 60 85-149 251-311 (313)
76 cd02750 MopB_Nitrate-R-NarG-li 89.9 0.7 1.5E-05 44.3 5.9 56 81-136 166-223 (461)
77 cd02759 MopB_Acetylene-hydrata 89.2 0.65 1.4E-05 44.6 5.2 53 82-134 157-212 (477)
78 cd02766 MopB_3 The MopB_3 CD i 88.6 0.53 1.1E-05 45.7 4.2 57 80-136 152-210 (501)
79 cd02753 MopB_Formate-Dh-H Form 88.0 0.92 2E-05 43.8 5.4 54 81-134 152-207 (512)
80 PRK07449 2-succinyl-5-enolpyru 87.7 0.99 2.2E-05 44.3 5.5 62 79-143 280-343 (568)
81 cd02765 MopB_4 The MopB_4 CD i 86.6 0.99 2.1E-05 44.6 4.8 56 81-136 155-212 (567)
82 COG1029 FwdB Formylmethanofura 86.4 1.4 3E-05 41.6 5.3 75 60-138 305-385 (429)
83 cd02768 MopB_NADH-Q-OR-NuoG2 M 86.3 1.7 3.8E-05 40.1 6.0 56 81-138 144-202 (386)
84 cd02755 MopB_Thiosulfate-R-lik 85.1 0.78 1.7E-05 43.9 3.1 55 82-136 153-210 (454)
85 cd02767 MopB_ydeP The MopB_yde 84.8 2 4.3E-05 42.8 5.9 43 81-123 159-203 (574)
86 COG3383 Uncharacterized anaero 84.7 0.81 1.7E-05 47.0 3.1 92 59-157 401-501 (978)
87 cd02763 MopB_2 The MopB_2 CD i 84.3 1.9 4E-05 43.9 5.6 55 81-135 151-207 (679)
88 PF03366 YEATS: YEATS family; 84.1 2.9 6.2E-05 31.2 5.2 49 178-227 2-50 (84)
89 cd02754 MopB_Nitrate-R-NapA-li 84.0 1.6 3.5E-05 42.7 4.9 55 82-136 154-212 (565)
90 TIGR01591 Fdh-alpha formate de 84.0 1.4 3.1E-05 44.0 4.6 54 81-134 151-206 (671)
91 TIGR03479 DMSO_red_II_alp DMSO 84.0 0.96 2.1E-05 47.3 3.4 62 81-142 220-285 (912)
92 PRK09444 pntB pyridine nucleot 83.8 2.8 6E-05 40.7 6.2 87 62-148 355-462 (462)
93 cd05014 SIS_Kpsf KpsF-like pro 83.0 1.7 3.7E-05 33.5 3.8 56 82-137 44-100 (128)
94 cd02762 MopB_1 The MopB_1 CD i 82.5 2.7 5.9E-05 41.0 5.8 56 81-136 152-215 (539)
95 TIGR03394 indol_phenyl_DC indo 82.1 1.3 2.8E-05 43.5 3.4 68 78-148 261-330 (535)
96 smart00834 CxxC_CXXC_SSSS Puta 81.5 0.63 1.4E-05 29.2 0.6 35 16-61 3-37 (41)
97 cd02760 MopB_Phenylacetyl-CoA- 81.2 3 6.6E-05 42.9 5.8 56 81-136 169-227 (760)
98 cd02770 MopB_DmsA-EC This CD ( 80.6 2.2 4.8E-05 42.5 4.5 56 81-136 162-223 (617)
99 TIGR01553 formate-DH-alph form 80.2 3.1 6.6E-05 44.3 5.5 68 81-148 217-289 (1009)
100 cd02757 MopB_Arsenate-R This C 80.1 2.9 6.2E-05 40.9 5.0 67 82-148 159-232 (523)
101 cd00368 Molybdopterin-Binding 80.1 1.9 4.1E-05 39.4 3.5 54 81-134 152-207 (374)
102 cd02068 radical_SAM_B12_BD B12 79.5 6.3 0.00014 30.7 5.9 67 84-150 38-112 (127)
103 cd02761 MopB_FmdB-FwdB The Mop 78.9 5 0.00011 37.4 6.0 53 84-136 130-192 (415)
104 PRK15488 thiosulfate reductase 78.8 3.6 7.7E-05 42.0 5.4 55 82-136 193-251 (759)
105 PF05728 UPF0227: Uncharacteri 78.6 2.4 5.2E-05 36.1 3.5 51 72-125 42-94 (187)
106 TIGR01701 Fdhalpha-like oxidor 78.6 4.4 9.6E-05 41.6 6.0 44 81-124 194-239 (743)
107 cd05710 SIS_1 A subgroup of th 78.1 2.6 5.6E-05 32.8 3.3 57 82-138 44-101 (120)
108 TIGR00509 bisC_fam molybdopter 78.0 3.1 6.7E-05 42.6 4.7 52 83-134 165-227 (770)
109 PF09723 Zn-ribbon_8: Zinc rib 77.8 0.86 1.9E-05 29.5 0.4 35 16-61 3-38 (42)
110 PRK09939 putative oxidoreducta 77.2 3 6.6E-05 43.0 4.3 42 82-123 205-248 (759)
111 cd02752 MopB_Formate-Dh-Na-lik 76.9 2.9 6.2E-05 42.4 4.0 54 81-134 165-221 (649)
112 cd02769 MopB_DMSOR-BSOR-TMAOR 76.9 4 8.7E-05 40.7 5.0 60 82-141 167-240 (609)
113 PF00384 Molybdopterin: Molybd 75.9 1.5 3.2E-05 40.9 1.6 68 81-148 107-180 (432)
114 PRK13937 phosphoheptose isomer 75.7 4 8.7E-05 34.4 4.0 56 82-137 103-159 (188)
115 cd02751 MopB_DMSOR-like The Mo 75.2 6.6 0.00014 39.1 6.0 51 84-134 168-229 (609)
116 PRK07860 NADH dehydrogenase su 75.0 3.6 7.8E-05 42.5 4.2 54 81-134 372-429 (797)
117 TIGR02026 BchE magnesium-proto 74.3 12 0.00025 36.6 7.3 65 84-148 62-135 (497)
118 COG2331 Uncharacterized protei 74.2 1.3 2.8E-05 32.7 0.5 43 16-69 10-57 (82)
119 PRK13938 phosphoheptose isomer 74.0 5.9 0.00013 34.0 4.7 58 80-137 108-166 (196)
120 cd05013 SIS_RpiR RpiR-like pro 74.0 5.9 0.00013 30.2 4.3 57 82-138 57-114 (139)
121 PF02233 PNTB: NAD(P) transhyd 73.9 1.4 3.1E-05 42.7 0.9 86 62-148 356-463 (463)
122 cd02758 MopB_Tetrathionate-Ra 73.7 4.5 9.8E-05 41.5 4.5 56 81-136 207-271 (735)
123 cd02772 MopB_NDH-1_NuoG2 MopB_ 72.4 5.8 0.00012 37.1 4.6 45 80-124 147-193 (414)
124 TIGR00373 conserved hypothetic 72.1 3.1 6.8E-05 34.5 2.5 33 16-61 107-139 (158)
125 cd05006 SIS_GmhA Phosphoheptos 71.9 6.8 0.00015 32.4 4.5 55 82-136 98-153 (177)
126 cd05008 SIS_GlmS_GlmD_1 SIS (S 71.8 4.6 0.0001 31.0 3.3 56 82-137 43-99 (126)
127 TIGR00441 gmhA phosphoheptose 71.5 10 0.00022 30.9 5.3 54 82-135 76-130 (154)
128 PRK06266 transcription initiat 71.4 3.6 7.8E-05 34.9 2.7 33 17-62 116-148 (178)
129 PRK04940 hypothetical protein; 71.3 3.4 7.5E-05 35.2 2.6 88 61-151 26-122 (180)
130 COG1282 PntB NAD/NADP transhyd 71.3 7.9 0.00017 36.9 5.1 87 61-148 356-463 (463)
131 TIGR01973 NuoG NADH-quinone ox 70.9 5.3 0.00011 39.8 4.2 56 81-136 358-416 (603)
132 PF07295 DUF1451: Protein of u 70.5 2.6 5.7E-05 34.8 1.6 29 16-58 110-138 (146)
133 PRK00414 gmhA phosphoheptose i 70.0 8.5 0.00018 32.7 4.7 56 82-137 108-164 (192)
134 TIGR03127 RuMP_HxlB 6-phospho 70.0 4.4 9.5E-05 33.5 2.9 55 82-136 69-124 (179)
135 COG1737 RpiR Transcriptional r 69.4 7.1 0.00015 35.1 4.4 74 59-135 154-228 (281)
136 PRK07586 hypothetical protein; 69.0 20 0.00043 34.7 7.6 60 77-149 254-316 (514)
137 PRK13532 nitrate reductase cat 68.0 6.8 0.00015 40.5 4.4 54 81-135 202-260 (830)
138 cd02764 MopB_PHLH The MopB_PHL 67.8 10 0.00023 36.9 5.5 67 82-148 193-272 (524)
139 cd05005 SIS_PHI Hexulose-6-pho 67.6 5.8 0.00013 32.8 3.2 57 82-138 72-129 (179)
140 COG0243 BisC Anaerobic dehydro 67.5 7.8 0.00017 39.6 4.6 66 83-148 197-270 (765)
141 PRK14990 anaerobic dimethyl su 67.2 7.4 0.00016 40.1 4.5 56 81-136 227-289 (814)
142 PRK00945 acetyl-CoA decarbonyl 67.0 11 0.00024 31.9 4.7 62 79-144 99-164 (171)
143 cd02773 MopB_Res-Cmplx1_Nad11 66.9 11 0.00024 34.9 5.2 50 81-130 141-193 (375)
144 COG1996 RPC10 DNA-directed RNA 66.7 3.3 7.2E-05 28.0 1.2 28 18-59 6-33 (49)
145 TIGR02605 CxxC_CxxC_SSSS putat 66.6 2.5 5.5E-05 28.0 0.6 32 16-58 3-34 (52)
146 PRK06260 threonine synthase; V 66.6 3.3 7.2E-05 39.1 1.7 29 17-61 2-30 (397)
147 PRK12474 hypothetical protein; 66.0 23 0.0005 34.4 7.4 59 78-149 259-320 (518)
148 TIGR02166 dmsA_ynfE anaerobic 65.9 8.4 0.00018 39.5 4.5 56 81-136 210-272 (797)
149 PRK15482 transcriptional regul 65.5 9.3 0.0002 34.1 4.3 59 80-138 177-236 (285)
150 TIGR03129 one_C_dehyd_B formyl 64.5 11 0.00023 35.1 4.7 51 84-134 136-196 (421)
151 smart00531 TFIIE Transcription 64.4 5.2 0.00011 32.6 2.2 38 17-62 98-135 (147)
152 TIGR03471 HpnJ hopanoid biosyn 63.7 20 0.00043 34.5 6.5 71 77-147 60-139 (472)
153 PRK00398 rpoP DNA-directed RNA 63.2 3.8 8.2E-05 26.7 1.0 27 18-58 3-29 (46)
154 TIGR02098 MJ0042_CXXC MJ0042 f 62.5 4.7 0.0001 25.0 1.3 35 18-61 2-36 (38)
155 TIGR01580 narG respiratory nit 61.9 10 0.00022 41.2 4.3 61 83-143 243-307 (1235)
156 PRK11557 putative DNA-binding 61.5 12 0.00026 33.1 4.2 59 77-135 167-226 (278)
157 PF09845 DUF2072: Zn-ribbon co 60.4 3.7 7.9E-05 33.3 0.6 25 20-58 3-27 (131)
158 COG3364 Zn-ribbon containing p 60.1 5.2 0.00011 31.2 1.4 11 20-30 4-14 (112)
159 COG3961 Pyruvate decarboxylase 59.2 16 0.00034 36.3 4.7 79 66-148 249-335 (557)
160 PRK11302 DNA-binding transcrip 59.1 17 0.00037 32.1 4.7 55 81-135 171-225 (284)
161 PLN02980 2-oxoglutarate decarb 58.4 19 0.0004 40.5 5.8 64 81-147 594-660 (1655)
162 PRK11032 hypothetical protein; 58.3 6.4 0.00014 33.0 1.7 27 18-58 124-150 (160)
163 KOG3954 Electron transfer flav 58.0 13 0.00028 34.0 3.7 58 87-149 276-334 (336)
164 PF04016 DUF364: Domain of unk 57.8 8.6 0.00019 31.4 2.4 73 76-149 53-133 (147)
165 PRK10886 DnaA initiator-associ 57.2 21 0.00047 30.6 4.9 59 79-137 103-165 (196)
166 PRK12496 hypothetical protein; 57.2 7.5 0.00016 32.5 2.0 28 18-61 127-154 (164)
167 COG0761 lytB 4-Hydroxy-3-methy 57.0 14 0.00031 33.9 3.8 70 78-148 205-281 (294)
168 PF01380 SIS: SIS domain SIS d 56.7 5.6 0.00012 30.4 1.1 57 80-136 48-105 (131)
169 PRK11337 DNA-binding transcrip 56.4 16 0.00034 32.7 4.1 57 79-135 181-238 (292)
170 PRK09129 NADH dehydrogenase su 56.2 20 0.00043 36.9 5.2 46 80-125 365-412 (776)
171 TIGR01706 NAPA periplasmic nit 55.8 13 0.00028 38.6 3.8 54 81-135 202-260 (830)
172 PRK07591 threonine synthase; V 55.8 8.2 0.00018 36.8 2.3 31 15-62 15-45 (421)
173 PF01155 HypA: Hydrogenase exp 55.5 5.8 0.00013 31.0 1.0 27 17-59 69-95 (113)
174 COG1379 PHP family phosphoeste 55.1 3.6 7.7E-05 38.5 -0.3 39 12-64 241-279 (403)
175 PRK00564 hypA hydrogenase nick 54.6 5.6 0.00012 31.4 0.8 28 17-59 70-97 (117)
176 PRK08493 NADH dehydrogenase su 54.5 24 0.00052 36.9 5.5 69 81-149 366-443 (819)
177 CHL00174 accD acetyl-CoA carbo 54.2 19 0.00041 33.1 4.2 17 105-121 161-177 (296)
178 PRK13936 phosphoheptose isomer 53.9 22 0.00048 30.2 4.4 59 81-139 107-169 (197)
179 TIGR00393 kpsF KpsF/GutQ famil 53.0 22 0.00047 31.0 4.4 54 82-135 44-98 (268)
180 PRK05321 nicotinate phosphorib 52.4 38 0.00081 32.5 6.1 81 64-151 309-394 (400)
181 PRK10892 D-arabinose 5-phospha 50.7 20 0.00044 32.5 3.9 55 81-135 90-145 (326)
182 PRK05580 primosome assembly pr 50.5 26 0.00057 35.6 5.0 23 75-97 468-490 (679)
183 TIGR00354 polC DNA polymerase, 50.5 11 0.00024 39.9 2.3 58 10-87 1000-1062(1095)
184 TIGR00595 priA primosomal prot 50.2 31 0.00067 33.8 5.3 23 75-97 300-322 (505)
185 TIGR01514 NAPRTase nicotinate 50.1 50 0.0011 31.6 6.5 80 64-150 309-393 (394)
186 TIGR00300 conserved hypothetic 49.2 20 0.00043 34.3 3.6 83 58-149 311-405 (407)
187 PF13248 zf-ribbon_3: zinc-rib 48.8 10 0.00023 21.7 1.1 25 18-60 2-26 (26)
188 PRK02947 hypothetical protein; 48.1 30 0.00065 30.5 4.5 54 81-134 102-167 (246)
189 PRK11543 gutQ D-arabinose 5-ph 47.9 18 0.0004 32.5 3.2 53 82-134 86-139 (321)
190 PF02310 B12-binding: B12 bind 47.4 17 0.00037 27.5 2.5 82 63-145 30-121 (121)
191 PRK04023 DNA polymerase II lar 47.3 13 0.00028 39.5 2.3 52 17-87 1036-1087(1121)
192 PF13717 zinc_ribbon_4: zinc-r 46.5 13 0.00029 23.1 1.4 34 18-60 2-35 (36)
193 PF13240 zinc_ribbon_2: zinc-r 46.2 12 0.00025 21.1 1.0 10 20-29 1-10 (23)
194 PF02401 LYTB: LytB protein; 46.1 26 0.00057 31.9 3.8 46 75-121 199-244 (281)
195 smart00659 RPOLCX RNA polymera 46.0 11 0.00023 24.8 0.9 26 19-59 3-28 (44)
196 PF05191 ADK_lid: Adenylate ki 45.9 9.9 0.00022 23.8 0.8 30 19-60 2-31 (36)
197 TIGR03844 cysteate_syn cysteat 45.6 15 0.00032 35.0 2.2 29 17-62 1-29 (398)
198 PRK14714 DNA polymerase II lar 45.3 14 0.00031 40.2 2.2 58 10-87 1241-1303(1337)
199 PRK14991 tetrathionate reducta 44.8 29 0.00064 37.1 4.5 60 82-141 282-353 (1031)
200 cd04795 SIS SIS domain. SIS (S 44.5 33 0.00072 24.0 3.5 40 80-119 42-81 (87)
201 PF10087 DUF2325: Uncharacteri 44.2 29 0.00063 25.9 3.3 42 78-119 41-82 (97)
202 PF13580 SIS_2: SIS domain; PD 44.1 31 0.00067 27.4 3.6 36 83-118 101-136 (138)
203 PRK05441 murQ N-acetylmuramic 44.0 40 0.00086 30.8 4.7 54 83-136 129-183 (299)
204 cd02774 MopB_Res-Cmplx1_Nad11- 44.0 29 0.00063 32.6 3.9 44 79-122 142-188 (366)
205 PRK06450 threonine synthase; V 43.5 16 0.00035 33.8 2.1 12 18-29 3-14 (338)
206 PRK08166 NADH dehydrogenase su 43.4 15 0.00032 38.3 2.0 41 81-121 367-409 (847)
207 TIGR02164 torA trimethylamine- 42.8 20 0.00044 37.1 2.9 52 83-134 208-274 (822)
208 PF13692 Glyco_trans_1_4: Glyc 42.6 63 0.0014 24.4 5.1 80 61-148 52-133 (135)
209 TIGR00216 ispH_lytB (E)-4-hydr 41.5 36 0.00079 31.0 4.0 46 75-121 198-243 (280)
210 cd02065 B12-binding_like B12 b 41.2 26 0.00057 26.5 2.7 83 63-146 29-116 (125)
211 cd05007 SIS_Etherase N-acetylm 41.0 44 0.00096 29.7 4.5 52 83-134 116-168 (257)
212 KOG3035 Isoamyl acetate-hydrol 40.8 11 0.00024 33.4 0.5 17 58-74 3-19 (245)
213 cd03816 GT1_ALG1_like This fam 40.5 1.4E+02 0.003 27.9 7.9 85 62-150 294-381 (415)
214 PLN02275 transferase, transfer 39.6 1.4E+02 0.003 27.4 7.7 80 62-145 286-368 (371)
215 cd03805 GT1_ALG2_like This fam 39.2 1.9E+02 0.004 26.0 8.4 67 80-149 294-363 (392)
216 PF09538 FYDLN_acid: Protein o 39.2 21 0.00045 28.0 1.8 30 18-63 9-39 (108)
217 PRK11382 frlB fructoselysine-6 39.1 33 0.00073 31.6 3.5 54 83-136 90-144 (340)
218 COG4821 Uncharacterized protei 38.8 54 0.0012 28.9 4.4 39 80-118 99-137 (243)
219 PRK12380 hydrogenase nickel in 38.7 11 0.00025 29.4 0.2 13 18-30 70-82 (113)
220 cd03822 GT1_ecORF704_like This 38.4 1.9E+02 0.0041 24.9 8.1 85 60-148 245-332 (366)
221 PRK09130 NADH dehydrogenase su 38.0 54 0.0012 33.5 5.0 45 80-124 359-406 (687)
222 TIGR00274 N-acetylmuramic acid 38.0 37 0.00081 30.9 3.5 53 83-135 124-177 (291)
223 TIGR00100 hypA hydrogenase nic 37.7 12 0.00026 29.4 0.3 26 18-59 70-95 (115)
224 cd05005 SIS_PHI Hexulose-6-pho 37.5 86 0.0019 25.7 5.4 52 69-120 16-67 (179)
225 COG3925 N-terminal domain of t 37.5 22 0.00048 27.4 1.6 31 84-122 39-69 (103)
226 PRK10017 colanic acid biosynth 37.4 1.3E+02 0.0029 28.8 7.4 77 75-154 107-200 (426)
227 PRK03681 hypA hydrogenase nick 37.2 16 0.00034 28.7 0.8 27 18-59 70-96 (114)
228 PLN02569 threonine synthase 37.2 19 0.00041 35.3 1.6 21 11-31 42-62 (484)
229 PF13407 Peripla_BP_4: Peripla 36.9 1.6E+02 0.0035 24.7 7.2 52 68-121 37-89 (257)
230 cd06267 PBP1_LacI_sugar_bindin 36.2 2.3E+02 0.0049 23.3 7.9 48 72-123 41-89 (264)
231 cd02771 MopB_NDH-1_NuoG2-N7 Mo 36.0 22 0.00048 33.8 1.8 18 81-98 141-158 (472)
232 TIGR00315 cdhB CO dehydrogenas 35.8 77 0.0017 26.5 4.8 62 78-145 90-157 (162)
233 TIGR03713 acc_sec_asp1 accesso 35.7 99 0.0021 30.5 6.3 77 63-149 409-487 (519)
234 TIGR02300 FYDLN_acid conserved 35.7 26 0.00057 28.3 1.9 30 18-63 9-39 (129)
235 PF02591 DUF164: Putative zinc 35.6 49 0.0011 22.3 3.0 43 5-60 14-56 (56)
236 PF03604 DNA_RNApol_7kD: DNA d 35.2 29 0.00063 21.2 1.6 25 20-59 2-26 (32)
237 cd00350 rubredoxin_like Rubred 34.7 26 0.00057 21.2 1.4 24 19-58 2-25 (33)
238 cd03801 GT1_YqgM_like This fam 34.4 2.1E+02 0.0046 24.1 7.6 68 78-148 268-339 (374)
239 PRK12360 4-hydroxy-3-methylbut 34.1 50 0.0011 30.1 3.7 44 76-120 200-243 (281)
240 PF13719 zinc_ribbon_5: zinc-r 34.1 26 0.00057 21.8 1.3 33 18-59 2-34 (37)
241 PRK08197 threonine synthase; V 34.1 21 0.00045 33.6 1.3 16 16-31 5-20 (394)
242 PRK01045 ispH 4-hydroxy-3-meth 33.8 56 0.0012 30.0 4.0 74 75-149 200-280 (298)
243 PRK12570 N-acetylmuramic acid- 33.3 75 0.0016 29.0 4.7 51 84-134 126-177 (296)
244 PF01596 Methyltransf_3: O-met 33.2 79 0.0017 27.2 4.7 67 79-148 39-117 (205)
245 cd03804 GT1_wbaZ_like This fam 32.9 2.8E+02 0.0061 24.5 8.4 81 61-149 241-325 (351)
246 TIGR02149 glgA_Coryne glycogen 32.7 1.8E+02 0.004 26.0 7.2 54 63-122 261-314 (388)
247 PRK15102 trimethylamine N-oxid 32.1 62 0.0013 33.6 4.4 59 83-141 211-286 (825)
248 PRK14101 bifunctional glucokin 32.1 76 0.0017 31.9 5.0 56 80-135 510-565 (638)
249 TIGR02693 arsenite_ox_L arseni 31.5 79 0.0017 32.9 5.1 49 81-129 216-283 (806)
250 cd03819 GT1_WavL_like This fam 31.1 2E+02 0.0044 25.0 7.1 80 61-148 245-328 (355)
251 cd05017 SIS_PGI_PMI_1 The memb 31.0 45 0.00098 25.5 2.5 38 82-119 40-77 (119)
252 PLN02929 NADH kinase 30.9 77 0.0017 29.2 4.4 40 81-124 60-99 (301)
253 cd00729 rubredoxin_SM Rubredox 30.9 31 0.00066 21.2 1.2 25 18-58 2-26 (34)
254 PRK09922 UDP-D-galactose:(gluc 30.9 2.6E+02 0.0055 25.2 7.9 70 79-151 251-325 (359)
255 PRK03824 hypA hydrogenase nick 30.8 27 0.00059 28.2 1.3 15 17-31 69-83 (135)
256 cd02756 MopB_Arsenite-Ox Arsen 30.1 1.1E+02 0.0023 31.4 5.6 50 81-130 219-288 (676)
257 TIGR03127 RuMP_HxlB 6-phospho 29.8 1.2E+02 0.0025 24.8 5.0 51 69-119 13-63 (179)
258 COG1867 TRM1 N2,N2-dimethylgua 29.7 66 0.0014 30.7 3.8 62 17-97 239-301 (380)
259 KOG3123 Diphthine synthase [Tr 29.5 62 0.0013 28.7 3.3 40 79-118 66-109 (272)
260 PRK14715 DNA polymerase II lar 28.7 38 0.00082 37.3 2.2 57 10-87 1530-1591(1627)
261 cd06270 PBP1_GalS_like Ligand 28.5 3.6E+02 0.0077 22.7 8.1 59 83-148 53-111 (268)
262 PRK00762 hypA hydrogenase nick 28.3 39 0.00085 26.8 1.8 13 18-31 70-82 (124)
263 cd06300 PBP1_ABC_sugar_binding 28.1 3.6E+02 0.0079 22.6 8.8 58 63-122 36-95 (272)
264 COG1675 TFA1 Transcription ini 27.7 49 0.0011 28.2 2.3 31 18-61 113-143 (176)
265 cd01406 SIR2-like Sir2-like: P 27.6 1.1E+02 0.0024 26.4 4.7 30 78-107 171-200 (242)
266 PRK15484 lipopolysaccharide 1, 27.5 3.4E+02 0.0073 24.9 8.2 70 78-149 269-343 (380)
267 COG1056 NadR Nicotinamide mono 27.4 69 0.0015 27.2 3.2 31 65-95 7-40 (172)
268 cd03806 GT1_ALG11_like This fa 27.4 3.9E+02 0.0085 25.0 8.7 82 61-150 304-392 (419)
269 cd03802 GT1_AviGT4_like This f 26.6 3.8E+02 0.0081 23.1 8.0 80 60-146 222-304 (335)
270 PF12172 DUF35_N: Rubredoxin-l 26.3 31 0.00067 21.2 0.7 13 15-27 8-20 (37)
271 PLN02589 caffeoyl-CoA O-methyl 26.2 1.6E+02 0.0034 26.2 5.4 63 82-147 76-150 (247)
272 cd01821 Rhamnogalacturan_acety 26.1 3.1E+02 0.0067 22.3 7.0 45 107-151 102-148 (198)
273 PF13289 SIR2_2: SIR2-like dom 25.9 1.4E+02 0.003 22.9 4.6 62 76-151 76-141 (143)
274 cd00730 rubredoxin Rubredoxin; 25.6 26 0.00055 23.6 0.2 12 19-30 2-13 (50)
275 PF00301 Rubredoxin: Rubredoxi 25.0 44 0.00096 22.2 1.3 14 18-31 1-14 (47)
276 cd04955 GT1_like_6 This family 24.7 3.5E+02 0.0075 23.5 7.4 56 62-123 248-303 (363)
277 PRK12775 putative trifunctiona 24.5 55 0.0012 35.0 2.5 14 47-62 837-850 (1006)
278 cd01401 PncB_like Nicotinate p 24.3 1.4E+02 0.0031 28.3 5.1 53 64-123 306-366 (377)
279 PRK13371 4-hydroxy-3-methylbut 24.3 1E+02 0.0023 29.5 4.1 43 78-121 280-323 (387)
280 cd06294 PBP1_ycjW_transcriptio 23.8 4.3E+02 0.0093 22.0 8.6 47 72-122 45-93 (270)
281 PRK08329 threonine synthase; V 23.6 47 0.001 30.8 1.6 11 19-29 2-12 (347)
282 COG3357 Predicted transcriptio 23.3 36 0.00078 26.1 0.6 11 19-29 59-69 (97)
283 cd06273 PBP1_GntR_like_1 This 23.3 4.4E+02 0.0096 22.0 9.1 63 79-148 48-111 (268)
284 PRK14890 putative Zn-ribbon RN 22.9 64 0.0014 22.6 1.8 8 48-57 48-55 (59)
285 cd03808 GT1_cap1E_like This fa 22.9 3.3E+02 0.0071 23.0 6.7 67 79-148 257-327 (359)
286 PF12850 Metallophos_2: Calcin 22.6 96 0.0021 23.9 3.1 34 64-97 3-37 (156)
287 cd06299 PBP1_LacI_like_13 Liga 22.5 4.5E+02 0.0099 21.8 7.8 36 84-123 54-89 (265)
288 PRK05638 threonine synthase; V 21.9 59 0.0013 31.2 2.0 12 18-29 1-12 (442)
289 PRK00087 4-hydroxy-3-methylbut 21.9 1E+02 0.0022 31.2 3.8 45 76-121 197-241 (647)
290 cd03821 GT1_Bme6_like This fam 21.9 4.4E+02 0.0096 22.4 7.4 68 79-149 275-344 (375)
291 KOG1184 Thiamine pyrophosphate 21.9 2.6E+02 0.0056 28.0 6.3 76 77-156 271-346 (561)
292 cd03799 GT1_amsK_like This is 21.9 5.2E+02 0.011 22.3 8.4 84 62-149 236-326 (355)
293 cd03807 GT1_WbnK_like This fam 21.0 2.8E+02 0.006 23.6 5.9 80 60-149 249-331 (365)
294 PF14353 CpXC: CpXC protein 21.0 46 0.00099 26.1 0.9 18 12-30 33-50 (128)
295 KOG2979 Protein involved in DN 21.0 31 0.00066 31.2 -0.1 55 9-70 168-237 (262)
296 cd06381 PBP1_iGluR_delta_like 20.8 5.8E+02 0.013 23.5 8.4 83 67-151 42-139 (363)
297 PF13678 Peptidase_M85: NFkB-p 20.7 78 0.0017 28.3 2.3 24 134-157 179-202 (250)
298 cd01537 PBP1_Repressors_Sugar_ 20.6 4.7E+02 0.01 21.3 8.6 44 77-123 46-90 (264)
299 PF01286 XPA_N: XPA protein N- 20.5 28 0.0006 21.7 -0.4 29 18-57 3-31 (34)
300 PF11789 zf-Nse: Zinc-finger o 20.3 87 0.0019 21.4 2.1 33 19-57 25-57 (57)
301 cd01539 PBP1_GGBP Periplasmic 20.1 5.9E+02 0.013 22.2 8.4 63 84-148 56-121 (303)
302 COG3091 SprT Zn-dependent meta 20.0 52 0.0011 27.5 1.0 38 15-61 114-151 (156)
303 cd03794 GT1_wbuB_like This fam 20.0 5.5E+02 0.012 21.8 8.2 82 62-148 275-363 (394)
No 1
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.2e-35 Score=258.44 Aligned_cols=138 Identities=29% Similarity=0.460 Sum_probs=127.9
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|+|| ++.+.+|+.|++.|+.+++.+... ....|+|| .|||.|||+||||||.+|+..++++.+++
T Consensus 106 G~~~VielHG-~~~~~~C~~C~~~~~~~~~~~~~~------~~~~p~Cp--~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~ 176 (244)
T PRK14138 106 GSKKVIELHG-NVEEYYCVRCGKRYTVEDVIEKLE------KSDVPRCD--DCSGLIRPNIVFFGEALPQDALREAIRLS 176 (244)
T ss_pred CCCeEEEccC-CcCeeEECCCCCcccHHHHHHHHh------cCCCCCCC--CCCCeECCCEEECCCcCCHHHHHHHHHHH
Confidence 6889999999 999999999999999876654321 23579999 89999999999999999999999999999
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhcc
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
++||++|||||||+|+|+++|+..++++|+++++||+++|+.|..++++|+|+++++|++||+.||+
T Consensus 177 ~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 177 SKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGGI 243 (244)
T ss_pred hcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998885
No 2
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.3e-36 Score=265.82 Aligned_cols=209 Identities=37% Similarity=0.556 Sum_probs=180.5
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCC------CCCCcccccEEEcCCCCChhhHH
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDV------KCGSRLKDTVLDWEDALPPVEMN 77 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~------~CgG~LRP~IV~FGE~lp~~~l~ 77 (240)
...++.|||| |++.-.|.+|... |+++..+++++.+.+++.|... .|.|.||++++.|+..+|..+|+
T Consensus 135 Pr~~LsElHG-NmfiEvC~sC~~~-----yvr~~~v~t~gl~at~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~ 208 (353)
T KOG1905|consen 135 PREKLSELHG-NMFIEVCKSCRPE-----YVRDRVVDTVGLKATGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLD 208 (353)
T ss_pred CHHHHHHHhc-chHHHHhhhhccc-----ceehhheeecccccccccccccccccccccccchhhccccccccCCchhhH
Confidence 4568899999 9999999999864 5666777777776666655443 35689999999999999999999
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhcccCCCCcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVR 157 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg~~iP~~~~ 157 (240)
.|.+++++||++|++||||+|.|.+++|..+.++|+++++||+|+|++|+.|++.|+|++|+||..||+.||++||.|++
T Consensus 209 ~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~ 288 (353)
T KOG1905|consen 209 RATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYDR 288 (353)
T ss_pred HHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCceeEeecccCCCCCCCcccceeEeeeccCCCCCCCCcceEEEeecCCCCcchhcccccCCceEEeeecccc
Q 026284 158 -VDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQITS 230 (240)
Q Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 230 (240)
.|++++.++.. ........+|.+...++++-..+.+|++.+. | +++.+++|.-.+++.+..
T Consensus 289 ~~d~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s---------pi~~~~~~~~~~k~~rr~ 350 (353)
T KOG1905|consen 289 LPDPIFILLTLS--RPGEEHTIPQPLLKNSVEETTKQEPFISTIS-S---------PILKGPRIRTPIKNGRRV 350 (353)
T ss_pred CCcccccccccC--CCCccccccccccccccccCCCCCccccccc-c---------ccccCCCCcCCccCcccc
Confidence 88888776665 2234578889999999999778899999988 1 488888888776665543
No 3
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.1e-33 Score=252.01 Aligned_cols=135 Identities=25% Similarity=0.320 Sum_probs=117.9
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhh---------------c------cCcCCCCCCCCCCCCCcccc
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIET---------------I------GMKKTPRRCSDVKCGSRLKD 62 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~---------------~------~~~~~~p~C~~~~CgG~LRP 62 (240)
|+++|+|+|| |++.++|+.|++.++.+++...+...+ . ......|+|+ .|||.|||
T Consensus 105 G~~~vielHG-~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~--~Cgg~lrP 181 (260)
T cd01409 105 GSRNVVELHG-SLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECE--RCGGVLKP 181 (260)
T ss_pred CCCCEEEEee-ecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccccchhhcccCCCCCCC--CCCCEECC
Confidence 5789999999 999999999999988765543221000 0 0112469999 89999999
Q ss_pred cEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHH
Q 026284 63 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 141 (240)
Q Consensus 63 ~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl 141 (240)
+||||||.+|++.+++|.+++++||++|||||||+|+|+++|+..+.++|+++|+||+++|++|..+++.|+|+++++|
T Consensus 182 ~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 182 DVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred CEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=99.98 E-value=3.5e-32 Score=239.19 Aligned_cols=130 Identities=18% Similarity=0.287 Sum_probs=114.7
Q ss_pred CCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhc
Q 026284 5 CICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 84 (240)
Q Consensus 5 ~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~ 84 (240)
.++|+|||| ++++.+|+.|++.++.+.+..... ....|+|+ .|||.|||+||||||.+|++.+..+.++++
T Consensus 104 ~~~V~elHG-~l~~~~C~~C~~~~~~~~~~~~~~------~~~~p~C~--~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~ 174 (235)
T cd01408 104 DDRIIEAHG-SFATAHCIKCKHKYPGDWMREDIF------NQEVPKCP--RCGGLVKPDIVFFGESLPSRFFSHMEEDKE 174 (235)
T ss_pred ccCEEEeCc-CCCccccccCCCcCCHHHHHHHHh------CCCCccCC--CCCCCccCcEEECCCCCCHHHHHHHHHHHh
Confidence 359999999 999999999999988754332211 12479999 899999999999999999988888989999
Q ss_pred cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHH
Q 026284 85 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGV 144 (240)
Q Consensus 85 ~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L 144 (240)
+||++|||||||+|+|++.|+..++ +|+++|+||+++|+.+ ..+|++|+|+|+++|++|
T Consensus 175 ~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 175 EADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred cCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 9999999999999999999998776 6899999999999998 889999999999999864
No 5
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.97 E-value=7.7e-32 Score=232.79 Aligned_cols=124 Identities=45% Similarity=0.654 Sum_probs=111.9
Q ss_pred CCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhc
Q 026284 5 CICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 84 (240)
Q Consensus 5 ~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~ 84 (240)
.++|+|+|| ++++++|+.|+..++.+++.... ......|+|+ .|||.|||+||||||.+|+..+++|.++++
T Consensus 83 ~~~vielHG-~~~~~~C~~C~~~~~~~~~~~~~-----~~~~~~p~C~--~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~ 154 (206)
T cd01410 83 REKLSELHG-NMFIEVCKSCGPEYVRDDVVETR-----GDKETGRRCH--ACGGILKDTIVDFGERLPPENWMGAAAAAC 154 (206)
T ss_pred cccEEEecC-CcCcccCCCCCCccchHHHHHHh-----hcCCCCCcCC--CCcCccCCcEEECCCCCCHHHHHHHHHHHh
Confidence 368999999 99999999999988876554321 1234679999 899999999999999999998999999999
Q ss_pred cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 85 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 85 ~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
+||++|||||||+|+|+++|+..++++|+++++||+++|+.|..+|+.|+|+
T Consensus 155 ~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 155 RADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred cCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEeCC
Confidence 9999999999999999999999899999999999999999999999999985
No 6
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=99.97 E-value=2.7e-31 Score=234.52 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=113.9
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCC--CcccccEEEcCC-CCChhhHHHHH
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCG--SRLKDTVLDWED-ALPPVEMNPAE 80 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~Cg--G~LRP~IV~FGE-~lp~~~l~~a~ 80 (240)
|+++|+|+|| ++++++|+.|++.+++.+... ...|.|+ .|| |.|||+|||||| .+|.+.++
T Consensus 104 G~~~v~elHG-~~~~~~C~~C~~~~~~~~~~~----------~~~p~C~--~Cg~~g~lrP~vV~FGE~~~~~~~~~--- 167 (242)
T PTZ00408 104 GSTHVLHMHG-ELLKVRCTATGHVFDWTEDVV----------HGSSRCK--CCGCVGTLRPHIVWFGEMPLYMDEIE--- 167 (242)
T ss_pred CCCcEEEecC-ccceEEECCCCcccCchhhhh----------cCCCccc--cCCCCCCCCCCEEEcCCCCCcHHHHH---
Confidence 5789999999 999999999999887654221 2468999 777 999999999999 77765554
Q ss_pred HHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 026284 81 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~L 148 (240)
+++++||++|||||||+|+|+++|+..++++|+++++||++++..+..++++|.|++++++++|++++
T Consensus 168 ~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 168 SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 44889999999999999999999999999999999999999999888899999999999999998876
No 7
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=99.97 E-value=2.8e-31 Score=237.92 Aligned_cols=139 Identities=24% Similarity=0.365 Sum_probs=118.0
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|+|| |+.+++|+.|++.++..+.+.... ... .....|+|+ |||.|||+||||||.+|+..++.|.+++
T Consensus 124 Gs~~V~ElHG-~l~~~~C~~C~~~~~~~~~~~~~~-~~~-~~~~~P~C~---Cgg~lrP~VV~FGE~lp~~~~~~a~~~~ 197 (271)
T PTZ00409 124 GNTKVIPLHG-SVFEARCCTCRKTIQLNKIMLQKT-SHF-MHQLPPECP---CGGIFKPNVILFGEVIPKSLLKQAEKEI 197 (271)
T ss_pred CCCcEEEecc-CcCcceeCCCCCCcccCHHHHhhh-hhh-ccCCCCCCC---CCCcccCcEEEeCCcCCHHHHHHHHHHH
Confidence 6889999999 999999999998877544321110 000 123468997 9999999999999999999999999999
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC-CcccEEEECcHHHHHHHHHHHhc
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d-~~adl~I~g~~devl~~L~~~Lg 149 (240)
++||++|||||||+|+|+++|+..++++|+++|+||+++|+.+ ..+|++|+|++++++. +++.|.
T Consensus 198 ~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~~ 263 (271)
T PTZ00409 198 DKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDILK 263 (271)
T ss_pred HcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHhc
Confidence 9999999999999999999999999999999999999999987 5689999999999995 545543
No 8
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=99.97 E-value=3.5e-31 Score=233.38 Aligned_cols=132 Identities=33% Similarity=0.558 Sum_probs=122.1
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|+|| ++.+.+|+.|++.|+.+++.. ...|+|+ .|||.|||+||||||.+|++.++.+.+++
T Consensus 109 G~~~v~elHG-~~~~~~C~~C~~~~~~~~~~~----------~~~p~C~--~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~ 175 (242)
T PRK00481 109 GSKNVIELHG-SLLRARCTKCGQTYDLDEYLK----------PEPPRCP--KCGGILRPDVVLFGEMLPELAIDEAYEAL 175 (242)
T ss_pred CCCceeeccC-CcCceeeCCCCCCcChhhhcc----------CCCCCCC--CCCCccCCCeEECCCCCCHHHHHHHHHHH
Confidence 5789999999 999999999999888765431 2367899 89999999999999999998899999999
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~L 148 (240)
++||++|||||||+|+|+++++..++++|+++|+||+++++.+..+++.|+|+++++|++|+++|
T Consensus 176 ~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 176 EEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred hcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 99999999999999999999998888899999999999999999999999999999999999987
No 9
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=99.97 E-value=3.7e-31 Score=230.77 Aligned_cols=123 Identities=33% Similarity=0.474 Sum_probs=112.0
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|+|| ++.+++|+.|++.++.+++ +.. .....|+|+ .|||.|||+||||||.+|++.+++|.+++
T Consensus 100 G~~~v~elHG-~l~~~~C~~C~~~~~~~~~-~~~------~~~~~p~C~--~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~ 169 (222)
T cd01413 100 GSKNVIELHG-TLQTAYCVNCGSKYDLEEV-KYA------KKHEVPRCP--KCGGIIRPDVVLFGEPLPQALLREAIEAA 169 (222)
T ss_pred CCCcEEEccC-CcCcceECCCCCCcchhHH-HHh------ccCCCCcCC--CCCCccCCCEEECCCCCCHHHHHHHHHHH
Confidence 5789999999 9999999999999887654 211 123579999 89999999999999999999999999999
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
++||++|||||||+|+|+++|+..++++|+++|+||+++|+.|..++++|+|+
T Consensus 170 ~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 170 KEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred hcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999885
No 10
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=99.97 E-value=1.2e-30 Score=235.29 Aligned_cols=145 Identities=23% Similarity=0.273 Sum_probs=126.1
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhh-----hhh----------c-----c-CcCCCCCCCCCCCCCcccc
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFE-----IET----------I-----G-MKKTPRRCSDVKCGSRLKD 62 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~-----~~~----------~-----~-~~~~~p~C~~~~CgG~LRP 62 (240)
|+++|+|+|| ++..++|++|++.++.+++..... +.. + . .....|+|+ .|||.|||
T Consensus 115 G~~~ViElHG-~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP~C~--~Cgg~lrP 191 (285)
T PRK05333 115 GSRDVIELHG-RLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPDGDADLEWAAFDHFRVPACP--ACGGILKP 191 (285)
T ss_pred CCCCEEeecC-CcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhcccCCCccccccccccccCCCCCCC--CCCCcccC
Confidence 5789999999 999999999999887654332110 000 0 0 112479999 89999999
Q ss_pred cEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHH
Q 026284 63 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 142 (240)
Q Consensus 63 ~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~ 142 (240)
+||||||.+|++.++.+.+++++||++|||||||.|+|++.++..+.++|+++|+||+++++.+..+++.|.|+++++|+
T Consensus 192 ~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~ 271 (285)
T PRK05333 192 DVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALA 271 (285)
T ss_pred CEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 026284 143 GVMRHLNLW 151 (240)
Q Consensus 143 ~L~~~Lg~~ 151 (240)
+|++.|++.
T Consensus 272 ~l~~~l~~~ 280 (285)
T PRK05333 272 ALVARLGLA 280 (285)
T ss_pred HHHHHhCCC
Confidence 999999874
No 11
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=99.97 E-value=5.1e-31 Score=233.36 Aligned_cols=139 Identities=26% Similarity=0.369 Sum_probs=124.8
Q ss_pred CCCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC-cccccEEEcCCCCChhhHHHHHH
Q 026284 3 IACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS-RLKDTVLDWEDALPPVEMNPAEE 81 (240)
Q Consensus 3 ~~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG-~LRP~IV~FGE~lp~~~l~~a~~ 81 (240)
-|+++|+|||| |+.+++|+.|+..+...+..+.. .....|+|+ .||+ .|||+||||||.+|.+.++.+.+
T Consensus 108 AGs~~Vi~lHG-sl~~~~C~~C~~~~~~~~~~~~~------~~~~~p~C~--~Cg~~~lrP~VV~fGE~lp~~~~~~~~~ 178 (250)
T COG0846 108 AGSKNVIELHG-SLKRVRCSKCGNQYYDEDVIKFI------EDGLIPRCP--KCGGPVLRPDVVWFGEPLPASFLDEALE 178 (250)
T ss_pred cCCCcEEEecc-ceeeeEeCCCcCccchhhhhhhc------ccCCCCcCc--cCCCccccCCEEEeCCCCCHHHHHHHHH
Confidence 37889999999 99999999999887754422111 112579999 9999 99999999999999999999999
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhcc
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+++||++||+||||.|+|++.+|..++++|+.+++||+++++.+..+|+.|+++++++++.|++.+..
T Consensus 179 ~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~~~ 247 (250)
T COG0846 179 ALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEELLK 247 (250)
T ss_pred HhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHHHHHHHHHHhhh
Confidence 999999999999999999999999988999999999999999999999999999999999999998754
No 12
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=99.96 E-value=6.6e-30 Score=222.56 Aligned_cols=129 Identities=25% Similarity=0.392 Sum_probs=116.8
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|+|| ++..++|+.|++.+...+.. .....|+|+ .|||.|||+||||||.+|. .++.+.+++
T Consensus 96 G~~~v~e~HG-~~~~~~C~~C~~~~~~~~~~---------~~~~~p~C~--~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~ 162 (224)
T cd01412 96 GSRNVIELHG-SLFRVRCSSCGYVGENNEEI---------PEEELPRCP--KCGGLLRPGVVWFGESLPL-ALLEAVEAL 162 (224)
T ss_pred CCCceEeeCC-CcCccccCCCCCCCCcchhh---------hccCCCCCC--CCCCccCCceEECCCCCHH-HHHHHHHHH
Confidence 5689999999 99999999999887653211 123579999 8999999999999999999 899999999
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHH
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVM 145 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~ 145 (240)
+++|++|||||||+|.|+.+++..++++|+++|+||+++++.++.+++.|+|+++++|++|+
T Consensus 163 ~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 163 AKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred HcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 99999999999999999999998888899999999999999999999999999999999874
No 13
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.96 E-value=2e-29 Score=220.33 Aligned_cols=120 Identities=24% Similarity=0.380 Sum_probs=109.8
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|+|| ++.+.+|+.|+..++.+++. ..|+|+ .|||.|||+||||||.+|.+.++++.+++
T Consensus 105 G~~~v~elHG-~~~~~~C~~C~~~~~~~~~~------------~~p~C~--~Cgg~lrP~vv~fge~~~~~~~~~~~~~~ 169 (225)
T cd01411 105 GSKNVVEFHG-SLYRIYCTVCGKTVDWEEYL------------KSPYHA--KCGGVIRPDIVLYEEMLNESVIEEAIQAI 169 (225)
T ss_pred CCCcEEEeCC-CcCeeEeCCCCCccchhhcC------------CCCCCC--CCCCEeCCCEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999 99999999999887764331 368999 89999999999999999999999999999
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHH
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKV 140 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~dev 140 (240)
++||++|||||||.|+|+++++..++ +|+++|+||+++++.+..++++|+| ++++
T Consensus 170 ~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~ 224 (225)
T cd01411 170 EKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIKD-AVKV 224 (225)
T ss_pred hcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECCCCCCCCcchhehhcc-hhhh
Confidence 99999999999999999999997664 7999999999999999999999999 8875
No 14
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=99.96 E-value=6.1e-29 Score=215.91 Aligned_cols=123 Identities=35% Similarity=0.537 Sum_probs=110.4
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|+|| ++..++|+.|++.+...++.... .....|+|+ .|||.|||+||||||.+|+. ++++.+++
T Consensus 96 G~~~v~elHG-~~~~~~C~~C~~~~~~~~~~~~~------~~~~~p~C~--~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~ 165 (218)
T cd01407 96 GSPKVIELHG-SLFRVRCTKCGKEYPRDELQADI------DREEVPRCP--KCGGLLRPDVVFFGESLPEE-LDEAAEAL 165 (218)
T ss_pred CCCCEEECcC-CcCcceeCCCcCCCcHHHHhHhh------ccCCCCcCC--CCCCccCCCeEECCCCCcHH-HHHHHHHH
Confidence 5679999999 99999999999987765433111 134689999 89999999999999999998 99999999
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
++||++|||||||+|+|+++++..++++|+++|+||+++++.+..+|++|+|+
T Consensus 166 ~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 166 AKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred hcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEeCC
Confidence 99999999999999999999999888899999999999999999999999985
No 15
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=99.95 E-value=2.6e-28 Score=224.63 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=116.2
Q ss_pred CCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhc
Q 026284 5 CICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 84 (240)
Q Consensus 5 ~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~ 84 (240)
+++|+|+|| ++++++|+.|++.|+.+...... ....+|+|+ .|||.|||+||||||.+|+..++ +.++++
T Consensus 135 ~~~ViElHG-sl~~~~C~~C~~~~~~~~~~~~~------~~~~vP~C~--~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~ 204 (349)
T PTZ00410 135 PSLLVEAHG-SFSAASCIECHTPYDIEQAYLEA------RSGKVPHCS--TCGGIVKPDVVFFGENLPDAFFN-VHHDIP 204 (349)
T ss_pred cccEEEecc-CCCeeEeCCCCCCcchhHHHHHh------hcCCCCCCC--CCCCccCCcEEecCCcCCHHHHH-HHHHHH
Confidence 468999999 99999999999988865433221 123579999 89999999999999999998777 899999
Q ss_pred cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--------------------------------------
Q 026284 85 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-------------------------------------- 126 (240)
Q Consensus 85 ~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d-------------------------------------- 126 (240)
+||++|||||||+|+|++.++..+. +|+++|+||++++...
T Consensus 205 ~aDllLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (349)
T PTZ00410 205 EAELLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERVGGLMFRFPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSS 283 (349)
T ss_pred hCCEEEEECcCCcccCHHHHHHHHh-cCCCEEEECccccCCceeeccCCccccchhhhhhhcccCccccccccccccccc
Confidence 9999999999999999999998776 6799999999976421
Q ss_pred -----------------CcccEEEECcHHHHHHHHHHHhccc
Q 026284 127 -----------------KKASLVVHAPVDKVIAGVMRHLNLW 151 (240)
Q Consensus 127 -----------------~~adl~I~g~~devl~~L~~~Lg~~ 151 (240)
...|+.+.|+||+-+-.|++.|||.
T Consensus 284 ~~~g~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~~ 325 (349)
T PTZ00410 284 SSDGYGQFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGLG 325 (349)
T ss_pred cccccccccccccCccccccceeecccchHHHHHHHHHhCcH
Confidence 1357889999999999999999994
No 16
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=5.3e-26 Score=197.57 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=119.8
Q ss_pred CCCCeEEecccccccceec-CCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHH
Q 026284 4 ACICVLEYQGRNLLSCTAI-LFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEEN 82 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~-~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~ 82 (240)
..+.+||.|| ++.+.+|+ .|++.|+.+ +++... .....|+|+ .|+|++||+||||||.||.+.++..+..
T Consensus 139 ~d~~lvEAHG-tFa~s~Ci~~C~~~yp~e-~~ka~i-----~~~~vpkC~--vC~~lVKP~IVFfGE~LP~rF~e~~~~D 209 (314)
T KOG2682|consen 139 PDEDLVEAHG-TFATSHCISSCRHEYPLE-WMKAKI-----MSEVVPKCE--VCQGLVKPDIVFFGESLPARFFECMQSD 209 (314)
T ss_pred CHHHHHHhcc-ceeeeeehhhhcCcCCHH-HHHHHH-----HhccCCCCc--hhhccccccEEEecCCccHHHHHHHhhc
Confidence 3567999999 99999999 699999975 445432 234689999 8999999999999999999988888888
Q ss_pred hccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC----CCCcccEEEECcHHHHHHHHHHHhccc
Q 026284 83 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKASLVVHAPVDKVIAGVMRHLNLW 151 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~----~d~~adl~I~g~~devl~~L~~~Lg~~ 151 (240)
...+||+||+||||+|+|+++||..+. +..+.+.||.++.. ..+..|+.++|+||+....|++.|||.
T Consensus 210 ~~~~dl~lV~GTSL~V~PFAsLpe~vp-~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 210 FLKVDLLLVMGTSLQVQPFASLPEKVP-LSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred ccccceEEEeccceeeeecccchhhhh-hcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhCcH
Confidence 899999999999999999999998764 66899999999876 124478999999999999999999994
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=99.92 E-value=2.9e-25 Score=191.91 Aligned_cols=119 Identities=37% Similarity=0.524 Sum_probs=107.9
Q ss_pred CCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhcc
Q 026284 6 ICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRM 85 (240)
Q Consensus 6 ~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~~ 85 (240)
.+|+|+|| ++...+|+.|++.++..++... ...|+|+ .|||.|||+|++|||.+|+..+.++.+++.+
T Consensus 102 ~~v~~lHG-~~~~~~C~~C~~~~~~~~~~~~---------~~~p~C~--~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~ 169 (222)
T cd00296 102 NRVIELHG-SLDRVRCTSCGKEYPRDEVLER---------EKPPRCP--KCGGLLRPDVVDFGEALPKEWFDRALEALLE 169 (222)
T ss_pred CcEEEecC-CCCccEECCCCCCcchhhhhhc---------cCCCCCC--CCCCcccCceEECCCCCCHHHHHHHHHHHhc
Confidence 38999999 9999999999988887654422 4689999 8999999999999999999888999999999
Q ss_pred CCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECc
Q 026284 86 ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAP 136 (240)
Q Consensus 86 aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~ 136 (240)
||++|+|||||+|+|+..++..+.++|+++++||++++..+ ..+++.++|+
T Consensus 170 ~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 170 ADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred CCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 99999999999999999999988889999999999999999 7888988874
No 18
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.7e-25 Score=194.18 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=123.9
Q ss_pred CCCCCeEEecccccccceecCCCcccchHHHHhhhhhhh-------c-----------------cCcCCCCCCCCCCCCC
Q 026284 3 IACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIET-------I-----------------GMKKTPRRCSDVKCGS 58 (240)
Q Consensus 3 ~~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~-------~-----------------~~~~~~p~C~~~~CgG 58 (240)
-||+.|.|||| +...+.|+.|+.+.+...|+..+..-+ . ......|.|. .|||
T Consensus 143 AGS~~~tElHG-~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~fke~~~~~~~~~pDgDv~lpl~~e~gF~IPeC~--~CgG 219 (305)
T KOG2683|consen 143 AGSRMVTELHG-SAYQVKCLSCGYIEPRQTFQDRLKYLNPGFKEAIVSPGHQRPDGDVELPLEFEEGFQIPECE--KCGG 219 (305)
T ss_pred ccccceeeecc-ceEEEEecccCcccchHHHHHHHHhcCcchhhhccCccccCCCCCeecchhhhhcccCCccc--ccCC
Confidence 47889999999 999999999999999887776543211 0 0123689999 9999
Q ss_pred cccccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHH
Q 026284 59 RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 59 ~LRP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~d 138 (240)
.|||+|+||||++|.+..+.+.+..++||-+||+||||+|+...++...|+..+.++.|||..||..|..+++.|..+|+
T Consensus 220 ~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~g 299 (305)
T KOG2683|consen 220 LLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIG 299 (305)
T ss_pred ccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHh
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 026284 139 KVIAG 143 (240)
Q Consensus 139 evl~~ 143 (240)
++|++
T Consensus 300 dvl~~ 304 (305)
T KOG2683|consen 300 EVLKE 304 (305)
T ss_pred hhhhc
Confidence 99975
No 19
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=2.4e-23 Score=192.47 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=120.7
Q ss_pred CeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC------------------cccccEEEcC
Q 026284 7 CVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS------------------RLKDTVLDWE 68 (240)
Q Consensus 7 kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG------------------~LRP~IV~FG 68 (240)
+|||+|| |+..+.|+.|+..++.+++..++. ....|.|| .|.+ .|||+|||||
T Consensus 193 ~lVq~HG-Sf~t~sCt~C~~k~~~~~~~~~~~------~~~vp~CP--~C~~~~~~r~~~g~r~~~~~vgvlrP~Ivffg 263 (412)
T KOG2684|consen 193 KLVQCHG-SFKTASCTKCGYKKPFEELREDIR------NQEVPVCP--DCEGKNEKRRGAGKRCESEGVGVLRPDIVFFG 263 (412)
T ss_pred ceEEecc-ccceeeecccccccChHHHHHHHh------cCcCccCc--ccccccccccCccccccccCccccccceEEec
Confidence 5999999 999999999999999876544332 34678888 7754 9999999999
Q ss_pred CCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 026284 69 DALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 69 E~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~L 148 (240)
|++|+............+||+|||||||.|+|+++++.... +..+.|.||.++.++. .+|+-+.|+||++...+.+.+
T Consensus 264 E~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~-~~vpqIliNr~~v~h~-efd~~ll~~CD~v~~~l~~~~ 341 (412)
T KOG2684|consen 264 ENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSFP-AKVPQILINRDPVPHA-EFDVELLGDCDDVIRLLCQKC 341 (412)
T ss_pred CCCChHHHhhhhccccccceEEEeCCccccccHHHHHhhhc-ccCcEEEecCcccccc-ccChhhccchHHHHHHHHhhc
Confidence 99999888777777777899999999999999999997643 4569999999988754 578889999999999999999
Q ss_pred cccCCCCccCC
Q 026284 149 NLWIPPYVRVD 159 (240)
Q Consensus 149 g~~iP~~~~~~ 159 (240)
||.+|.-.-.+
T Consensus 342 g~~~~~~~~~~ 352 (412)
T KOG2684|consen 342 GWLKPLLSLND 352 (412)
T ss_pred cccchHhhhhh
Confidence 99998765544
No 20
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=99.89 E-value=1.8e-23 Score=176.02 Aligned_cols=87 Identities=31% Similarity=0.528 Sum_probs=72.4
Q ss_pred CCCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHh
Q 026284 4 ACICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENC 83 (240)
Q Consensus 4 ~~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~ 83 (240)
|+++|+|||| |+..++|+.|++.++..++..... ....++|+ .|||.|||+||||||.+| +.+..|.+++
T Consensus 92 G~~~vielHG-~l~~~~C~~C~~~~~~~~~~~~~~------~~~~~~C~--~C~~~lrp~vv~fgE~~~-~~~~~~~~~~ 161 (178)
T PF02146_consen 92 GSPKVIELHG-SLFRLRCSKCGKEYDREDIVDSID------EEEPPRCP--KCGGLLRPDVVLFGESLP-EEIEEAIEDA 161 (178)
T ss_dssp TESCEEETTE-EEEEEEETTTSBEEEGHHHHHHHH------TTSSCBCT--TTSCBEEEEE--BTSB-S-HHHHHHHHHH
T ss_pred cchhhHHHHh-hhceeeecCCCccccchhhccccc------cccccccc--ccCccCCCCeeecCCCCH-HHHHHHHHHH
Confidence 5679999999 999999999999988776544322 24567999 999999999999999999 7799999999
Q ss_pred ccCCEEEEEcCCCCccc
Q 026284 84 RMADVVLCLGTSLQITP 100 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~P 100 (240)
++|||+|||||||+|+|
T Consensus 162 ~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 162 EEADLLLVIGTSLQVYP 178 (178)
T ss_dssp HH-SEEEEESS-STSTT
T ss_pred HcCCEEEEEccCcEEEC
Confidence 99999999999999998
No 21
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=97.10 E-value=0.002 Score=51.46 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=49.7
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHH
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 144 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L 144 (240)
..+.+.+++||++|++||++.-........ ......++|.|+.++....+ ..++.|.|++..++.+|
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSDFNTYGFSP-AFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSSTTTTTTTTG-CSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCcccccccccc-ccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 467778899999999999986545444221 12223489999999876553 46899999999999875
No 22
>PRK07524 hypothetical protein; Provisional
Probab=95.71 E-value=0.021 Score=55.69 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=51.8
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcc
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
..+.+.+++||++|++||++........-......++++|-||.++.... ...++.|.|++.++|++|.+.|..
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 35667788999999999998644321100001123467999998875432 246889999999999999998754
No 23
>PRK08322 acetolactate synthase; Reviewed
Probab=95.70 E-value=0.032 Score=54.50 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=52.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+...+++||++|++||++.-++...+. ...+.++|.||.++...+ ...++.|.|++..+|.+|.+.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 3556778999999999998866544332 124568999998876543 34689999999999999998875
No 24
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.66 E-value=0.028 Score=55.93 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=52.8
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC--CCcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~--d~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+.+||++|+|||++.......+... ..+.++|.||.++... ....++.|.|++..+|++|.+.|..
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~~ 355 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDEF--ASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLE 355 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhhc--CCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhhc
Confidence 456678899999999999865444333222 3456899999887643 3357899999999999999998743
No 25
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.64 E-value=0.03 Score=55.21 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=53.3
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|+|||++.-+........ ..+.++|.||.++.... ...++.|.|++.++|.+|++.|..
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 337 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEKY--CPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDE 337 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhh
Confidence 456678899999999999876654333221 23468999998876543 346899999999999999998753
No 26
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.58 E-value=0.029 Score=55.25 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=52.9
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++.-+........ ...+++|.||.++....+ ..++.|.|++..+|.+|.+.|.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKY--CPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhc--CCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 455678899999999999876665433222 234689999998775443 4689999999999999988775
No 27
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=95.51 E-value=0.046 Score=54.11 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--CCCcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+...+.+||++|++||++.-+....... ...+.++|.||.++.. .....++.|.|++.++|.+|.+.|.
T Consensus 276 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 276 YANFAVSECDLLIALGARFDDRVTGKLDE--FACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCCHhH--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 34557789999999999987654433322 1235689999988763 3345689999999999999999875
No 28
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=95.48 E-value=0.036 Score=54.98 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=51.4
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHh
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~L 148 (240)
.+.+.+++||++|++||++.-........ ...+.++|.||.++.... ...++.|.|++..+|.+|.+.|
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 34567789999999999987554433321 224567999998876543 3468999999999999999876
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.47 E-value=0.039 Score=54.29 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=53.0
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++..+........ ....++|.||.++....+ ..++.|.|++.++|..|++.|.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKY--CPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 455677899999999999977665444222 234689999988765432 4688999999999999999874
No 30
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=95.44 E-value=0.046 Score=54.37 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=52.1
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--CCCcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++||++.......+... ..++++|.||.++.. .....++.|.|++.++|.+|.+.|.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~--~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSF--APDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 456778899999999999876543332211 234678999988753 3345789999999999999999875
No 31
>PRK06154 hypothetical protein; Provisional
Probab=95.30 E-value=0.051 Score=53.61 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=50.8
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC--CCcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~--d~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|+|||++.-+.... . ...+.++|.||.++... ....++.|.|++.++|.+|++.|..
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~---~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 343 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGL---P-MPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRR 343 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCc---c-CCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhh
Confidence 45667889999999999987532211 1 23356888888876543 3356899999999999999998753
No 32
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=95.29 E-value=0.046 Score=53.73 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=52.4
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++|+++.-.+....... ...+.+++.||.++....+ ..++.|.|++..+|.+|++.|.
T Consensus 266 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 266 EASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 345567789999999999876665443221 1224689999988765433 4678999999999999999875
No 33
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.28 E-value=0.049 Score=54.09 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=52.2
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++.-......... ..+.++|.||.++....+ ..++.|.|++..+|.+|++.|.
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDAF--SPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 455677899999999999865544333221 234679999988775433 4689999999999999999874
No 34
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.28 E-value=0.056 Score=52.75 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=50.9
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++|+++.-+...... ...+.++|.||.++.... ...++.|.|++.++|..|.+.|.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 3456788999999999997644332221 122468999999887643 34678999999999999988764
No 35
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.25 E-value=0.049 Score=53.69 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=52.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++||++..+........ ..+.++|.||.++....+ ..++.|.|++.++|..|.+.|.
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~~--~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAKF--CPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 455677899999999999876654433222 234689999988765443 4689999999999999998874
No 36
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.21 E-value=0.052 Score=53.36 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=51.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+.+||++|+|||++.-......... ....++|.||.++.... ...++.|.|++.++|.+|.+.|.
T Consensus 262 ~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 262 AANMAMSECDLLISLGARFDDRVTGKLSEF--AKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 345677899999999999876544333221 23468999998876543 24678999999999999999874
No 37
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.14 E-value=0.056 Score=53.39 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=51.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++||++.-......... ....++|.||..+....+ ..++.|.|++.++|.+|.+.|+
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLELF--SPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCccccc--CCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 455678899999999999876544332211 224578999988765433 4689999999999999988775
No 38
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.09 E-value=0.052 Score=53.26 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=53.3
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhh-hcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcccCCC
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKS-LRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNLWIPP 154 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a-~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~~iP~ 154 (240)
.+.+.+++||++|++|+++.-.+...+.... .....++|.||.++.... ...++.|.|++..++++|.+.+....+.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~ 342 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPPASPA 342 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccccchh
Confidence 4556778999999999998655543331111 113468999998876433 2468999999999999998865433333
Q ss_pred C
Q 026284 155 Y 155 (240)
Q Consensus 155 ~ 155 (240)
|
T Consensus 343 ~ 343 (557)
T PRK08199 343 W 343 (557)
T ss_pred H
Confidence 4
No 39
>PLN02470 acetolactate synthase
Probab=95.04 E-value=0.066 Score=52.95 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=51.1
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++........... ....++|.||.++.... ...++.|.|++..+|.+|.+.|.
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLEAF--ASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 345677899999999999865544332211 22457899998876433 34688999999999999998875
No 40
>PRK05858 hypothetical protein; Provisional
Probab=95.00 E-value=0.089 Score=51.49 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=53.9
Q ss_pred cCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHH
Q 026284 67 WEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV 144 (240)
Q Consensus 67 FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L 144 (240)
|-|..|-..-..+.+.+++||++|++||++.-...... ...+.++|.|+.++....+ ..++.|.|++..++.+|
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 319 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV----FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc----cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHH
Confidence 44444432222345677899999999998754332211 1234689999988765433 46889999999999999
Q ss_pred HHHhc
Q 026284 145 MRHLN 149 (240)
Q Consensus 145 ~~~Lg 149 (240)
.+.|.
T Consensus 320 ~~~l~ 324 (542)
T PRK05858 320 AGAGG 324 (542)
T ss_pred HHhcc
Confidence 88775
No 41
>PRK08266 hypothetical protein; Provisional
Probab=94.90 E-value=0.048 Score=53.22 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=50.3
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC-CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d-~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+.+||++|++||++... ...... ...+.++|.||.++.... ...++.|.|++..+|++|.+.|.
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP-TFRWPW--RPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc-cccccc--cCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 3456778999999999998765 322211 223568899888755432 35689999999999999999875
No 42
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=94.86 E-value=0.08 Score=52.20 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=51.5
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC-CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d-~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++||.+.-........ ...+.++|.||.++.... ...++.|.|++..+|++|.+.|.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSL--YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--cCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 46667889999999999987665543322 123568999998875422 22368899999999999998874
No 43
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.86 E-value=0.075 Score=52.59 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+.+||++|++||++.-........ ...+.++|.||.++.... ...++.|.|++..+|.+|.+.|.
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 334 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWANRHTGSVEV--YTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAR 334 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhh--cCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhh
Confidence 34566789999999999986544333221 223568999998876543 34679999999999999998874
No 44
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.83 E-value=0.069 Score=52.87 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++.-+......... ..+.++|.||.++.... ...++.|.|++.++|++|.+.|.
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHFA-SRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhcC-CCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 4556778999999999998755432221111 23468999998876433 34689999999999999998774
No 45
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.82 E-value=0.096 Score=51.36 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=49.6
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--CCCcccEEEECcHHHHHHHHHHHhc
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
+.+.+++|||+|++||++.-+....-... ...+.++|.|+.++.. .....++.|.|++.++|.+|.+.|.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 330 (554)
T TIGR03254 259 RSFALAEADVVMLVGARLNWLLSHGKGKL-WGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAK 330 (554)
T ss_pred HHHHHhcCCEEEEECCCCchhhccCchhh-cCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhh
Confidence 34568899999999999874443221111 1235678888877654 3345688999999999999999884
No 46
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=94.81 E-value=0.071 Score=52.59 Aligned_cols=68 Identities=12% Similarity=0.208 Sum_probs=48.8
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC-----CCcccEEEECcHHHHHHHHHHHhcc
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-----DKKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~-----d~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
+.+.+++|||+|++||++.-.+... . ...++++|-||.++... ....++.|.|++..++.+|.+.|.-
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~--~--~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 345 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI--R--PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKS 345 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc--c--CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhh
Confidence 4456678999999999875333211 1 12346898898886532 3346899999999999999998863
No 47
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=94.76 E-value=0.075 Score=52.01 Aligned_cols=69 Identities=10% Similarity=0.258 Sum_probs=49.9
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHh
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~L 148 (240)
.+...+++||++|++||++.-.-...+... ..+.++|.||.++.... ...++.|.|++..++++|.+.+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLNTF--APHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCcccc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 456677899999999999865433222111 23457999988876433 3468999999999999998765
No 48
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.72 E-value=0.074 Score=52.62 Aligned_cols=73 Identities=26% Similarity=0.247 Sum_probs=51.1
Q ss_pred HHHHHhccCCEEEEEcCCCCcccccc-chhhhhcCCCEEEEEcCCCCCC--CCcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACN-LPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~-lp~~a~~~g~~lViIN~q~t~~--d~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|+|||++.-..... ........++++|.||.++... ....++.|.|++..+|.+|.+.|..
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAE 334 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhhh
Confidence 34567789999999999986332210 0101112457899999887643 2346889999999999999998853
No 49
>PRK08611 pyruvate oxidase; Provisional
Probab=94.67 E-value=0.085 Score=52.10 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=48.7
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|+|||++.... + ...+.++|.||.++.... ...++.|.|++..+|.+|.+.|..
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~~~~---~----~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 327 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYPYVD---Y----LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKH 327 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCCccc---c----CCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhccc
Confidence 34567789999999999974322 1 112358999998875443 346789999999999999988753
No 50
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.62 E-value=0.091 Score=51.63 Aligned_cols=71 Identities=11% Similarity=0.245 Sum_probs=51.1
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|++||++.-.-...... ...+.++|.||.++.... ...++.|.|++..+|++|.+.|..
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 338 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLAS--FAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQY 338 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc
Confidence 45567889999999999986433322211 123568999998875432 346899999999999999998753
No 51
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=94.61 E-value=0.085 Score=51.72 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++.-.....+... ..+.++|.||.++.... ...++.|.|++..+|++|.+.|.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKF--APNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 455677899999999999865443332211 23468999998875432 34689999999999999999884
No 52
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=94.55 E-value=0.094 Score=51.70 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=50.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++.-......... ....++|.||.++....+ ..++.|.|++..+|..|.+.|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKTF--AKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence 455677899999999999864332222111 224679999988765433 4578999999999999998874
No 53
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.52 E-value=0.11 Score=51.02 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=51.5
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++|+++.......... ...+.++|.||.++....+ ..++.|.|++.++|.+|.+.|.
T Consensus 270 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 270 STNYILQEADLLIVLGARFDDRAIGKTEQ--FCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCCHhh--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence 35567789999999999987654433211 1234689999988765433 4689999999999999988774
No 54
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=94.50 E-value=0.12 Score=51.19 Aligned_cols=70 Identities=11% Similarity=0.260 Sum_probs=50.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++||++.-........ ...+.++|.||.++.... ...++.|.|++..+|+.|++.|.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISS--FAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCccc--cCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 45567889999999999976433222211 123467899998876433 24688999999999999999875
No 55
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.43 E-value=0.14 Score=50.36 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=48.6
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC--CCcccEEEECcHHHHHHHHHHHhc
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~--d~~adl~I~g~~devl~~L~~~Lg 149 (240)
...+++||++|+||+++.-+........ ...+.++|.|+..+... ....++.|.|++..+|.+|.+.|.
T Consensus 267 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 267 SLALANADVVLLVGARLNWLLSHGKGKT-WGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred HHHHhcCCEEEEeCCCCchhcccCchhc-cCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence 3467899999999999864433221111 12346888888776543 334678999999999999999885
No 56
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.34 E-value=0.1 Score=51.60 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=53.4
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhcc
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg~ 150 (240)
..+...+.+|||+|+|||.+.=+... +....... . +|-|+.++....+ ..++-|.|++.++|.+|.+.+.-
T Consensus 258 ~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~-~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~ 330 (550)
T COG0028 258 KAANEALEEADLLLAVGARFDDRVTG-YSGFAPPA-A-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP 330 (550)
T ss_pred HHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcC-C-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh
Confidence 45677888999999999998855554 32233222 2 8888888765543 47899999999999999999864
No 57
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.34 E-value=0.11 Score=51.34 Aligned_cols=72 Identities=24% Similarity=0.234 Sum_probs=50.2
Q ss_pred HHHHHhccCCEEEEEcCCCCccccc-cchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPAC-NLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~-~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++|||+|++||.+.-.... .........++++|.||.++.... ...++.|.|++..+|.+|++.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 4556788999999999998632111 000001224678999988765433 34688999999999999999885
No 58
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=94.31 E-value=0.12 Score=51.36 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=49.4
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|++||++... .+.. ...++++|.||.++.... ...++.|.|++..++.+|.+.|.-
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~---~~~~--~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYS---EFLP--KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLER 334 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHH---hcCC--CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhc
Confidence 4566788999999999997422 1110 122468999988876543 245788999999999999998864
No 59
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=94.31 E-value=0.1 Score=51.55 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=49.0
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++|||+|+|||++... .+ ..+.++|.||.++....+ ..++.|.|++..++.+|.+.|+-
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---~~-----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~ 324 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---QF-----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKE 324 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---hc-----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhcc
Confidence 4556778999999999987521 11 123578999988765433 46889999999999999998864
No 60
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=94.27 E-value=0.11 Score=51.39 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=48.0
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|++||++... .+... ...+..+|.||.++.... ...++.|.|++..+|.+|.+.|.-
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~---~~~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 327 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFA---EVSKA-FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEP 327 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCcc---ccccc-cCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccc
Confidence 3456778999999999997422 22111 123445588888765433 346789999999999999988754
No 61
>PRK08617 acetolactate synthase; Reviewed
Probab=94.23 E-value=0.12 Score=50.62 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=49.5
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
+.+.+++||++|++|+++.-+...... ...+.++|.||.++...++ ..++.|.|++..+|..|.+.+.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 456778999999999987544322221 1124589999988766543 4688999999999999988764
No 62
>PRK07064 hypothetical protein; Provisional
Probab=93.88 E-value=0.15 Score=49.82 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=50.4
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC--CCcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~--d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++|||+|++|+++.-....... .....+++.||.++... ....++.|.|++..+|.+|.+.|.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS---LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc---cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 3566778999999999998755543321 11234788888876543 335688999999999999998775
No 63
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=93.86 E-value=0.12 Score=49.15 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=48.9
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
+.+.+ ++|++|++||.+.-...... ....++++|.|+.++...++ ..++.|.|++.+++.+|.+.+.
T Consensus 269 ~~~~~-~aDlvl~lG~~~~~~~~~~~---~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 269 LREEL-QPDLVIRFGGPPVSKRLRQW---LARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhhhC-CCCEEEEeCCCcchhHHHHH---HhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 33445 89999999999865443332 11235689999988876543 4579999999999999888774
No 64
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=93.45 E-value=0.16 Score=49.49 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=53.7
Q ss_pred HHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC-C--CcccEEEECcHHHHHHHHHHHhccc
Q 026284 81 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-D--KKASLVVHAPVDKVIAGVMRHLNLW 151 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~-d--~~adl~I~g~~devl~~L~~~Lg~~ 151 (240)
.++++||++|++|+-|.-.=-..++.+ ..+..|+|.||..+..+ . -..++-|+|++..++.+|.+.|+-.
T Consensus 272 ~ALk~ADvvll~GarlnwiLhfG~~Pk-~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~~ 344 (571)
T KOG1185|consen 272 LALKKADVVLLAGARLNWILHFGLPPK-WSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQDQ 344 (571)
T ss_pred HHHhhCCEEEEecceeeEEEecCCCCc-cCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcCC
Confidence 366889999999999986665555433 35667888887765433 2 2578999999999999999999763
No 65
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=93.23 E-value=0.22 Score=49.04 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=47.7
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg 149 (240)
+.+.+++||++|++||++... .+ .....++|.||..+.... ...++.|.|++.+++.+|.+.|.
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~~---~~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPYR---QF----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHHhCCEEEEECCCCCcc---cc----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 446778999999999987532 11 122358999998876543 34689999999999999988774
No 66
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=92.97 E-value=0.21 Score=49.19 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=50.7
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHHHHHHhcc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.+.+++||++|++||++.-......... ..+.++|.||.++.... ...++.|.|++..+|.+|.+.++.
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~ 346 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYF--AKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGK 346 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhc--CCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhc
Confidence 455677899999999999865433222211 23457888888876432 346889999999999999987753
No 67
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=92.09 E-value=0.31 Score=47.49 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=48.6
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC-CcccEEEECcHHHHHHHHHHHhc
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d-~~adl~I~g~~devl~~L~~~Lg 149 (240)
..+.+.+++||++|++|+++--+........ ...+.++|.||..+.... ...++.|.|++..++.+|.+.|.
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPH-LPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCcccc-CCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 3455678899999999997422221111111 123567888988775432 23578899999999999999885
No 68
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=91.95 E-value=0.39 Score=46.72 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=58.5
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHh-cccCCC
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL-NLWIPP 154 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~L-g~~iP~ 154 (240)
.|-..+.+|||+|-|||-++=.-..+-.. ....+.+++-||-++-..-++-.+.+.+++...|.+|...| |++-+.
T Consensus 288 AAN~~A~~ADlVigiGTR~~DFTTgS~al-F~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~ 364 (617)
T COG3962 288 AANRAAEEADLVIGIGTRLQDFTTGSKAL-FKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAA 364 (617)
T ss_pred HHHhhhhhcCEEEEecccccccccccHHH-hcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccch
Confidence 45667789999999999998665555432 13467789999999876556667889999999999999998 565544
No 69
>PLN02573 pyruvate decarboxylase
Probab=91.79 E-value=0.32 Score=48.16 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++|+++.-......... ..+.++|.||.++....+..++-+. ++..++..|.+.|.
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSLL--LKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCccccccccc--CCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 455677899999999999875554333211 2356899999988765443344433 58888888888875
No 70
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=90.90 E-value=0.59 Score=45.82 Aligned_cols=59 Identities=24% Similarity=0.374 Sum_probs=43.3
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCC--CcccEEEECcHHHHHHH
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAG 143 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d--~~adl~I~g~~devl~~ 143 (240)
.+.+.+++||++|++||++.... + ...+.++|.||.++.... ...++.|.|++..+|..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 312 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI 312 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence 45567789999999999985332 1 122568999998876543 34689999999999943
No 71
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=90.67 E-value=0.22 Score=48.75 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=46.2
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|++||++.-.......... ...++|.||.++....+ ..++.| +++..+|.+|.+.|+
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~--~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQL--TPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccC--CcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 4566778999999999998644433221111 12468888887654322 235556 899999999998774
No 72
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=90.52 E-value=0.53 Score=44.25 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=49.4
Q ss_pred cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 85 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 85 ~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t-~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
..+|.|.+|-|.+|.=...+ +.-..||-||.++. |.-+.+|+-|-||.-+++|+|.++|.
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 35899999999987765555 23346899999976 67788999999999999999999975
No 73
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=90.40 E-value=0.58 Score=43.24 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 86 ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 86 aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t-~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
-+|.|.+|-|.+|.=...+ +.-..||-||.++. |.-+.+|+-|-||.-+++|+|.+++.
T Consensus 253 P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 253 PELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred ccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 5799999999887765554 23346899999976 66788999999999999999999874
No 74
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=90.24 E-value=0.6 Score=43.13 Aligned_cols=59 Identities=27% Similarity=0.326 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 86 ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 86 aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t-~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.||.|.+|-|.++.=.+.+ +.-..||-||.++. |.-+.+|+-|-|+.-+++|+|.+.|.
T Consensus 252 P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 252 SDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred ccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 4788899988887665554 23347999999976 66788999999999999999999874
No 75
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=89.97 E-value=0.76 Score=42.50 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=50.2
Q ss_pred cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 85 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 85 ~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t-~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
..||.|.+|=|.++.=.+.+ +.-..||-||.++. |.-+.+|+-|-||.-+++|+|.++|+
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 46899999999997766555 23347899999976 67788999999999999999999986
No 76
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.85 E-value=0.7 Score=44.31 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHhccCCEEEEEcCCCCccccc--cchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQITPAC--NLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~--~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
..+.+||++|++|+-....-.. .....++++|+++|.|++..+.....+|.+|+=+
T Consensus 166 ~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~ 223 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIK 223 (461)
T ss_pred hHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccC
Confidence 4567899999999986543211 1123467899999999999998888888877543
No 77
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.24 E-value=0.65 Score=44.63 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=40.1
Q ss_pred HhccCCEEEEEcCCCCcccc---ccchhhhhcCCCEEEEEcCCCCCCCCcccEEEE
Q 026284 82 NCRMADVVLCLGTSLQITPA---CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 134 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa---~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~ 134 (240)
.+.+||++|++|+-....-. ......++++|+++|.|++..+.....+|.+|.
T Consensus 157 d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 157 DWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 45689999999997654422 122234567899999999999988788888876
No 78
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=88.64 E-value=0.53 Score=45.72 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=42.8
Q ss_pred HHHhccCCEEEEEcCCCCcc-c-cccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 80 EENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~-P-a~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
.+.+.+||++|++|+-.... | .......++++|+++|.|++..|.....+|.+|+=+
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~i~ 210 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQIR 210 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeeccC
Confidence 34668999999999986542 2 122234567899999999999998888888887643
No 79
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.97 E-value=0.92 Score=43.82 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=39.8
Q ss_pred HHhccCCEEEEEcCCCCcccc--ccchhhhhcCCCEEEEEcCCCCCCCCcccEEEE
Q 026284 81 ENCRMADVVLCLGTSLQITPA--CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 134 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa--~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~ 134 (240)
..+.+||++|++|+-....-. ......++++|+++|.|++..+.....+|.+|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 345689999999997644321 111234568899999999999887778888876
No 80
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=87.67 E-value=0.99 Score=44.32 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=43.5
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHH
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAG 143 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~ 143 (240)
+.+.+++||++|++|+++.-...... ......+++.||.++...++ ..++.|.|++.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQW---LADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHH---HhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 45677899999999999853322111 11223388999988766543 4678999999999987
No 81
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=86.57 E-value=0.99 Score=44.57 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.9
Q ss_pred HHhccCCEEEEEcCCCCcccc--ccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQITPA--CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa--~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
..+.+||++|++|+.....-. ......++++|+++|.|++..+..-..+|.+|.=+
T Consensus 155 ~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ir 212 (567)
T cd02765 155 TDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPIR 212 (567)
T ss_pred hHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEeccC
Confidence 445789999999998654422 22223467899999999999998878888887644
No 82
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=86.36 E-value=1.4 Score=41.62 Aligned_cols=75 Identities=16% Similarity=0.310 Sum_probs=57.5
Q ss_pred ccccEEEcCCCCChhhH--HHHHHHh--ccCCEEEEEcCCCCccccccchhhhhc--CCCEEEEEcCCCCCCCCcccEEE
Q 026284 60 LKDTVLDWEDALPPVEM--NPAEENC--RMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKDKKASLVV 133 (240)
Q Consensus 60 LRP~IV~FGE~lp~~~l--~~a~~~~--~~aDLvLVIGTSL~V~Pa~~lp~~a~~--~g~~lViIN~q~t~~d~~adl~I 133 (240)
=-|.-+.|-+.+|...- ..+.+.+ +++|..||||| -|.++||..+.+ ...|+|-|++-+++....+|++|
T Consensus 305 GYpf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~s----Dp~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVvi 380 (429)
T COG1029 305 GYPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIAS----DPGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVI 380 (429)
T ss_pred CCceeeecccCCcCCCcccccHHHHHhccCCCeEEEEec----CccccChHHHHHHhhcCCEEEecCCCCcchhhcceec
Confidence 36889999999876421 2344444 45999999999 688999987643 45689999999999988999988
Q ss_pred ECcHH
Q 026284 134 HAPVD 138 (240)
Q Consensus 134 ~g~~d 138 (240)
.+-++
T Consensus 381 P~aI~ 385 (429)
T COG1029 381 PSAID 385 (429)
T ss_pred cccee
Confidence 77444
No 83
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=86.28 E-value=1.7 Score=40.08 Aligned_cols=56 Identities=25% Similarity=0.298 Sum_probs=38.9
Q ss_pred HHhccCCEEEEEcCCCCcc-cc-ccchhhhh-cCCCEEEEEcCCCCCCCCcccEEEECcHH
Q 026284 81 ENCRMADVVLCLGTSLQIT-PA-CNLPLKSL-RGGGKIVIVNLQQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa-~~lp~~a~-~~g~~lViIN~q~t~~d~~adl~I~g~~d 138 (240)
..+.+||++|++|+-+... |. ..-...+. ++|++++.|++..+.. .+|.+++-+.+
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg 202 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPL 202 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCc
Confidence 4567899999999976432 21 11122343 4599999999998887 67888776555
No 84
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=85.09 E-value=0.78 Score=43.87 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=40.0
Q ss_pred HhccCCEEEEEcCCCCccc-c--ccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 82 NCRMADVVLCLGTSLQITP-A--CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~P-a--~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
.+.+||++|++|+-..... . ......++++|+++|.|++..|.....+|.+|.=+
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~i~ 210 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIPIK 210 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecCCC
Confidence 4568999999999765442 1 22223466789999999999988777888876543
No 85
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=84.83 E-value=2 Score=42.80 Aligned_cols=43 Identities=21% Similarity=0.447 Sum_probs=29.7
Q ss_pred HHhccCCEEEEEcCCCCcc-cc-ccchhhhhcCCCEEEEEcCCCC
Q 026284 81 ENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQT 123 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa-~~lp~~a~~~g~~lViIN~q~t 123 (240)
+.+.+||++|++|+-.... |. ......++++|++||.||+-.+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 4566899999999964322 11 1112356789999999999765
No 86
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=84.71 E-value=0.81 Score=46.97 Aligned_cols=92 Identities=21% Similarity=0.295 Sum_probs=59.9
Q ss_pred cccccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCC-ccc-cccchhhhhc-CCCEEEEEcCCCCCCCCcccEEEEC
Q 026284 59 RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQ-ITP-ACNLPLKSLR-GGGKIVIVNLQQTPKDKKASLVVHA 135 (240)
Q Consensus 59 ~LRP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~-V~P-a~~lp~~a~~-~g~~lViIN~q~t~~d~~adl~I~g 135 (240)
-|-++|=.+++.-+ .+.+..+|++|+|||.-. -.| .+....+|++ +|.|+|.+.+.++.....+|++++-
T Consensus 401 gL~rTvG~g~dsgs-------i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~p 473 (978)
T COG3383 401 GLFRTVGSGADSGS-------IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHP 473 (978)
T ss_pred cchheeeccCCCCC-------HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCC
Confidence 34556655555533 356788999999999532 112 1222345555 9999999999999999999999986
Q ss_pred cHHH---HHHHHHHHh---cccCCCCcc
Q 026284 136 PVDK---VIAGVMRHL---NLWIPPYVR 157 (240)
Q Consensus 136 ~~de---vl~~L~~~L---g~~iP~~~~ 157 (240)
+.+. +|..+.+.+ ||.--.|.+
T Consensus 474 kpGtd~a~l~AvakyiideGl~D~~Fi~ 501 (978)
T COG3383 474 KPGTDLAWLTAVAKYIIDEGLHDEAFIR 501 (978)
T ss_pred CCCccHHHHHHHHHHHHhCCcchHHHHH
Confidence 6553 444555544 554334443
No 87
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=84.31 E-value=1.9 Score=43.95 Aligned_cols=55 Identities=24% Similarity=0.135 Sum_probs=39.2
Q ss_pred HHhccCCEEEEEcCCCCc--cccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEEC
Q 026284 81 ENCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 135 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V--~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g 135 (240)
..+.+||++|++|+.... .|...-...++++|+++|.||+..|.....+|.+|.=
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~i 207 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVPI 207 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecCc
Confidence 456789999999985332 1222222345678999999999999877778887753
No 88
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=84.14 E-value=2.9 Score=31.21 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=34.4
Q ss_pred cceeEeeeccCCCCCCCCcceEEEeecCCCCcchhcccccCCceEEeeec
Q 026284 178 VKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQ 227 (240)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~ 227 (240)
-+|++.+.+.++. -...|+++|....-..=.-.-.+++++||.+.++.-
T Consensus 2 h~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GW 50 (84)
T PF03366_consen 2 HKWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGW 50 (84)
T ss_dssp EEEEEEEEECCCT---TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEES
T ss_pred cEEEEEEEeCCCC-CccceEEEEEEECCCCCCCCceEecCCCCEEEEeEe
Confidence 3799999999888 479999999995332211113588999999987653
No 89
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.98 E-value=1.6 Score=42.74 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred HhccCCEEEEEcCCCCcccc--ccchhhhhcC--CCEEEEEcCCCCCCCCcccEEEECc
Q 026284 82 NCRMADVVLCLGTSLQITPA--CNLPLKSLRG--GGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa--~~lp~~a~~~--g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
.+.+||++|++|+-....-. ......++++ |+++|.|++..+.....+|.+|.-+
T Consensus 154 Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~i~ 212 (565)
T cd02754 154 DIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIR 212 (565)
T ss_pred HHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeCCC
Confidence 45789999999998654311 1122345556 9999999999998877888877543
No 90
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=83.97 E-value=1.4 Score=43.99 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=39.1
Q ss_pred HHhccCCEEEEEcCCCCcccc--ccchhhhhcCCCEEEEEcCCCCCCCCcccEEEE
Q 026284 81 ENCRMADVVLCLGTSLQITPA--CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 134 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa--~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~ 134 (240)
..+.+||++|++|+-....-. ......++++|+++|.|++..+.....+|.+|.
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~ 206 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP 206 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence 357789999999997543321 122234667999999999999887777787764
No 91
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=83.97 E-value=0.96 Score=47.35 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=44.3
Q ss_pred HHhccCCEEEEEcCCCCcc--ccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEEC--cHHHHHH
Q 026284 81 ENCRMADVVLCLGTSLQIT--PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA--PVDKVIA 142 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~--Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g--~~devl~ 142 (240)
..+.+||++|++|+-.... +.......++++|+++|.|++..|.....+|.+|.= ..|-+|.
T Consensus 220 ~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~ALa 285 (912)
T TIGR03479 220 DDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAALA 285 (912)
T ss_pred hhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHHH
Confidence 3456899999999976443 223333456789999999999999887888877653 3444443
No 92
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=83.81 E-value=2.8 Score=40.68 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=57.0
Q ss_pred ccEEEcCCCCChh---hHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCC---------EEEEEcCCCCC-C---
Q 026284 62 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGG---------KIVIVNLQQTP-K--- 125 (240)
Q Consensus 62 P~IV~FGE~lp~~---~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~---------~lViIN~q~t~-~--- 125 (240)
=||++=+-.+|.+ ++++.-....++|++||||..=.|.|+++--.-..=.|- .+++++..-.+ +
T Consensus 355 MNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAGv 434 (462)
T PRK09444 355 MNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGV 434 (462)
T ss_pred ceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCCC
Confidence 3788888888976 445555577899999999999999999864211111222 33444333221 1
Q ss_pred -----CCcccEEEECcHHHHHHHHHHHh
Q 026284 126 -----DKKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 126 -----d~~adl~I~g~~devl~~L~~~L 148 (240)
-+....-+.||+.+.+.+|.+++
T Consensus 435 ~NpLF~~~nt~MlfGDAK~~~~~l~~~~ 462 (462)
T PRK09444 435 QNPLFFKENTQMLFGDAKASVDAILKAL 462 (462)
T ss_pred CCcceecCCceEEeccHHHHHHHHHHhC
Confidence 12234568999999999988764
No 93
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=82.97 E-value=1.7 Score=33.55 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=44.8
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcC-CCCCCCCcccEEEECcH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPV 137 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~-q~t~~d~~adl~I~g~~ 137 (240)
.+.+-|++|++.-|....-.......++++|+++|.|-- ...+..+.+|+.|....
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 457789999999999988888888889999998877744 45677778888887543
No 94
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.51 E-value=2.7 Score=41.04 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=40.9
Q ss_pred HHhccCCEEEEEcCCCCcccccc--------chhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQITPACN--------LPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~--------lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
+.+.+||++|++|+-....-... ....++++|+++|.|++..|..-..+|.+|.=+
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ir 215 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLFVR 215 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeCcC
Confidence 35678999999998765542111 223466889999999999998777888887543
No 95
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=82.15 E-value=1.3 Score=43.50 Aligned_cols=68 Identities=13% Similarity=0.002 Sum_probs=42.0
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHHh
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~L 148 (240)
.+.+.+++||++|++||++.-+....-. ....+.++|.|+.++..... ..++.+ +++.+.|.++.+.+
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~~--~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVSQ--RKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCccccccccccc--ccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 4556778999999999998644221110 11123578888776544322 345666 56777777776655
No 96
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=81.45 E-value=0.63 Score=29.24 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=22.9
Q ss_pred cccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc
Q 026284 16 LLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 61 (240)
Q Consensus 16 l~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR 61 (240)
++..+|..||..++...-. .. .....|| .||+.++
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~--------~~-~~~~~CP--~Cg~~~~ 37 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKI--------SD-DPLATCP--ECGGDVR 37 (41)
T ss_pred CEEEEcCCCCCEEEEEEec--------CC-CCCCCCC--CCCCcce
Confidence 3457899999987742211 11 3567799 8998654
No 97
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.17 E-value=3 Score=42.92 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=41.3
Q ss_pred HHhccCCEEEEEcCCCCcc--c-cccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQIT--P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~--P-a~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
..+.+||++|++|+-.... | ..+....++++|+++|.|++..+.....+|.+|.=.
T Consensus 169 ~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpir 227 (760)
T cd02760 169 ADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIR 227 (760)
T ss_pred chHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcC
Confidence 4567899999999987433 1 112223456789999999999998888889887544
No 98
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.57 E-value=2.2 Score=42.46 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=40.3
Q ss_pred HHhccCCEEEEEcCCCCcccc-----ccchhhhhcCCCEEEEEcCCCCCCCC-cccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQITPA-----CNLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa-----~~lp~~a~~~g~~lViIN~q~t~~d~-~adl~I~g~ 136 (240)
..+.+||++|+.|+-....-. ......++++|+++|.|++..|..-. .+|.+|.=+
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~ir 223 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIPIR 223 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEECCC
Confidence 345689999999997654422 12234567789999999999988664 688776533
No 99
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=80.23 E-value=3.1 Score=44.30 Aligned_cols=68 Identities=16% Similarity=0.333 Sum_probs=45.3
Q ss_pred HHhccCCEEEEEcCCCCcc-cc-ccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc--HHH-HHHHHHHHh
Q 026284 81 ENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP--VDK-VIAGVMRHL 148 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa-~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~--~de-vl~~L~~~L 148 (240)
..+.+||++|++|+-.... |. ......++++|+++|.||+..|.....+|++|.=+ .|- ++..|++.|
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~irPGTD~AL~~am~~~I 289 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIRSGSDIAFLNGMIKYI 289 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCCCChHHHHHHHHHHHH
Confidence 3467899999999975432 21 12223567899999999999988777888776533 333 333444444
No 100
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.11 E-value=2.9 Score=40.95 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=43.8
Q ss_pred HhccCCEEEEEcCCCCcc--ccc--cchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc--HH-HHHHHHHHHh
Q 026284 82 NCRMADVVLCLGTSLQIT--PAC--NLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP--VD-KVIAGVMRHL 148 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~--Pa~--~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~--~d-evl~~L~~~L 148 (240)
.+.+||++|++|+..... +.. .-...++++|+++|.|++..+.....+|.+|.=. .| .++-.+++.|
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~i 232 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVI 232 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHH
Confidence 457899999999876432 111 1112346789999999999988777788887533 22 3344444444
No 101
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=80.08 E-value=1.9 Score=39.36 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred HHhccCCEEEEEcCCCCccccc--cchhhhhcCCCEEEEEcCCCCCCCCcccEEEE
Q 026284 81 ENCRMADVVLCLGTSLQITPAC--NLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 134 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~--~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~ 134 (240)
..+.+||++|++|+-....-.. .....++++|+++|.|++..+.....+|.++.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~ 207 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLP 207 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeC
Confidence 3456899999999976443221 11234567899999999999887666777664
No 102
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=79.47 E-value=6.3 Score=30.72 Aligned_cols=67 Identities=16% Similarity=0.027 Sum_probs=44.2
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCC--CEEEEEcCCCCC------CCCcccEEEECcHHHHHHHHHHHhcc
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGG--GKIVIVNLQQTP------KDKKASLVVHAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g--~~lViIN~q~t~------~d~~adl~I~g~~devl~~L~~~Lg~ 150 (240)
.+.|++.+-..+.+...+..+....++.+ .++++-....|. ....+|+.+.|..+..+.+|++.|.-
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~ 112 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELEE 112 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 57888877666666555555555444433 455544333331 23468999999999999999999854
No 103
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.91 E-value=5 Score=37.37 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=36.1
Q ss_pred ccCCEEEEEcCCCCccccc---cchh-------hhhcCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 84 RMADVVLCLGTSLQITPAC---NLPL-------KSLRGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~---~lp~-------~a~~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
.+||++|++|+-....-.. ++.. .+.++|++++.|++..+.....+|.+|+-+
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i~ 192 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQID 192 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEecC
Confidence 4799999999876543211 1101 112478899999999988777788777533
No 104
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=78.80 E-value=3.6 Score=42.02 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=40.3
Q ss_pred HhccCCEEEEEcCCCCc-cccc--cchhhhh-cCCCEEEEEcCCCCCCCCcccEEEECc
Q 026284 82 NCRMADVVLCLGTSLQI-TPAC--NLPLKSL-RGGGKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V-~Pa~--~lp~~a~-~~g~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
.+.+||++|++|+-... .|.. .....++ ++|+++|.|++..+.....+|.+|.=+
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i~ 251 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAIR 251 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeeccC
Confidence 45789999999987654 2332 2223455 789999999999998878888887543
No 105
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=78.65 E-value=2.4 Score=36.14 Aligned_cols=51 Identities=25% Similarity=0.231 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHhcc--CCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC
Q 026284 72 PPVEMNPAEENCRM--ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK 125 (240)
Q Consensus 72 p~~~l~~a~~~~~~--aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~ 125 (240)
|+..++...+.+++ .+-+++|||||-=+-|..| +.+.|.+-|.||+--.+.
T Consensus 42 p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~L---a~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 42 PEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYL---AERYGLPAVLINPAVRPY 94 (187)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHH---HHHhCCCEEEEcCCCCHH
Confidence 34455555565554 2348999999986666655 445678889999887663
No 106
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=78.62 E-value=4.4 Score=41.56 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=30.0
Q ss_pred HHhccCCEEEEEcCCCCccccc--cchhhhhcCCCEEEEEcCCCCC
Q 026284 81 ENCRMADVVLCLGTSLQITPAC--NLPLKSLRGGGKIVIVNLQQTP 124 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~--~lp~~a~~~g~~lViIN~q~t~ 124 (240)
+.+.+||++|++|+-....-.. .....++++|++||.||+-.+.
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 3566899999999965432111 1123467899999999996653
No 107
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=78.15 E-value=2.6 Score=32.78 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=45.2
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECcHH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~~d 138 (240)
.+.+-|++|++-.|....-.......++++|++++.| |....+..+.+|+.+.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 4566799999999998777777778888999987766 55566777788888887766
No 108
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=77.97 E-value=3.1 Score=42.58 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=38.4
Q ss_pred hccCCEEEEEcCCCCcc----------ccccchhhhhcCCCEEEEEcCCCCCCCCcc-cEEEE
Q 026284 83 CRMADVVLCLGTSLQIT----------PACNLPLKSLRGGGKIVIVNLQQTPKDKKA-SLVVH 134 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~----------Pa~~lp~~a~~~g~~lViIN~q~t~~d~~a-dl~I~ 134 (240)
+.+||++|+.|+-..+. +.......++++|+++|.|++..|..-..+ |++|+
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~ 227 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIP 227 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeC
Confidence 57899999999986543 222333456789999999999999866654 67654
No 109
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=77.85 E-value=0.86 Score=29.46 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=23.0
Q ss_pred cccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC-ccc
Q 026284 16 LLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS-RLK 61 (240)
Q Consensus 16 l~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG-~LR 61 (240)
++..+|..||..++... . +.. .....|| .||+ .++
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~-----~~~-~~~~~CP--~Cg~~~~~ 38 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---S-----ISE-DDPVPCP--ECGSTEVR 38 (42)
T ss_pred CEEEEeCCCCCEEEEEE---E-----cCC-CCCCcCC--CCCCCceE
Confidence 45678999998877421 1 112 4567899 8998 543
No 110
>PRK09939 putative oxidoreductase; Provisional
Probab=77.19 E-value=3 Score=42.97 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=29.0
Q ss_pred HhccCCEEEEEcCCCCcc-cc-ccchhhhhcCCCEEEEEcCCCC
Q 026284 82 NCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQT 123 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~-Pa-~~lp~~a~~~g~~lViIN~q~t 123 (240)
.+.+||++|++|+-.... |. ......++++|++||.||+-.+
T Consensus 205 Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 205 DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 457899999999965432 21 1111346788999999999764
No 111
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.91 E-value=2.9 Score=42.37 Aligned_cols=54 Identities=28% Similarity=0.406 Sum_probs=38.9
Q ss_pred HHhccCCEEEEEcCCCCc-ccc-ccchhhhhcC-CCEEEEEcCCCCCCCCcccEEEE
Q 026284 81 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRG-GGKIVIVNLQQTPKDKKASLVVH 134 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V-~Pa-~~lp~~a~~~-g~~lViIN~q~t~~d~~adl~I~ 134 (240)
..+++||++|++|+-... .|. ..-...++++ |+++|.|++..|.....+|++++
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 356789999999997653 232 1112345555 99999999999987778888765
No 112
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.86 E-value=4 Score=40.67 Aligned_cols=60 Identities=8% Similarity=0.084 Sum_probs=39.9
Q ss_pred HhccCCEEEEEcCCCCcc-c----------cccchhhhhcCCCEEEEEcCCCCCCCCccc-EE--EECcHHHHH
Q 026284 82 NCRMADVVLCLGTSLQIT-P----------ACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-LV--VHAPVDKVI 141 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~-P----------a~~lp~~a~~~g~~lViIN~q~t~~d~~ad-l~--I~g~~devl 141 (240)
.+.+||++|+.|+-.... | .......++++|+++|.|++..|..-..+| ++ |+=..|-+|
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~add~~l~irPGTD~AL 240 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELGAEWIAIRPGTDVAL 240 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhcCcEeccCCCcHHHH
Confidence 357999999999875532 1 112233567899999999999988656554 44 443444444
No 113
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=75.90 E-value=1.5 Score=40.90 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=42.3
Q ss_pred HHhccCCEEEEEcCCCCcccc---ccchhhhhcCCCEEEEEcCCCCCCCCcccEEEEC--cHHHHH-HHHHHHh
Q 026284 81 ENCRMADVVLCLGTSLQITPA---CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA--PVDKVI-AGVMRHL 148 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa---~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g--~~devl-~~L~~~L 148 (240)
..+.+||++|++|+-...... ..+...++++|+++|.|++..+.....+|.+|.- ..|-.| -.+++.+
T Consensus 107 ~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al~~a~~~~i 180 (432)
T PF00384_consen 107 EDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAALALAMAHVI 180 (432)
T ss_dssp HGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHHHHHHHHHH
T ss_pred ceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHhhcccccce
Confidence 477899999999997543332 1223346778999999999999766667776653 344444 4445444
No 114
>PRK13937 phosphoheptose isomerase; Provisional
Probab=75.65 E-value=4 Score=34.43 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=45.2
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECcH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 137 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~~ 137 (240)
.+++-|++|++-.|....-.......++++|+++|.| +....+..+.+|+.|.-..
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~ 159 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS 159 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 5577899999999998888888888889999998877 5566777778888776544
No 115
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.16 E-value=6.6 Score=39.06 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=37.1
Q ss_pred ccCCEEEEEcCCCCcc-ccc---------cchhhhhcCCCEEEEEcCCCCCCCC-cccEEEE
Q 026284 84 RMADVVLCLGTSLQIT-PAC---------NLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVH 134 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~-Pa~---------~lp~~a~~~g~~lViIN~q~t~~d~-~adl~I~ 134 (240)
.+||++|+.|+-.... |.. .....++++|+++|.|++..+..-. .+|++|.
T Consensus 168 ~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 168 EHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred hcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 3599999999875433 211 2333567889999999999988765 6888775
No 116
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=74.96 E-value=3.6 Score=42.54 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHhccCCEEEEEcCCCCc-cccc--cchhhhhcCCCEEEEEcCCCCC-CCCcccEEEE
Q 026284 81 ENCRMADVVLCLGTSLQI-TPAC--NLPLKSLRGGGKIVIVNLQQTP-KDKKASLVVH 134 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V-~Pa~--~lp~~a~~~g~~lViIN~q~t~-~d~~adl~I~ 134 (240)
+.+.+||++|++|+-... .|.. ++-..++++|+++|.||+..|. ..+.+|.+++
T Consensus 372 ~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~ 429 (797)
T PRK07860 372 ADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLR 429 (797)
T ss_pred HHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceec
Confidence 456789999999997654 3321 2212234689999999998876 3455666664
No 117
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=74.28 E-value=12 Score=36.55 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=49.0
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcC--CCEEEEEcCCCCCCC-------CcccEEEECcHHHHHHHHHHHh
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRG--GGKIVIVNLQQTPKD-------KKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~--g~~lViIN~q~t~~d-------~~adl~I~g~~devl~~L~~~L 148 (240)
.+.|++.+-+++.+.+.+..+...+++. ++++|+=...+|... ...|+++.|..++.+.+|++.|
T Consensus 62 ~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 62 HCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 3689988877777777677776655543 777777777666531 2479999999999999999987
No 118
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.17 E-value=1.3 Score=32.72 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=28.0
Q ss_pred cccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc-----ccEEEcCC
Q 026284 16 LLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK-----DTVLDWED 69 (240)
Q Consensus 16 l~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR-----P~IV~FGE 69 (240)
++...|..|+..++.-+-+++ ...-.|+ .||+.+| +.|+|=|-
T Consensus 10 tY~Y~c~~cg~~~dvvq~~~d---------dplt~ce--~c~a~~kk~l~~vgi~fKGS 57 (82)
T COG2331 10 TYSYECTECGNRFDVVQAMTD---------DPLTTCE--ECGARLKKLLNAVGIVFKGS 57 (82)
T ss_pred ceEEeecccchHHHHHHhccc---------CccccCh--hhChHHHHhhccceEEEecc
Confidence 356789999998876443332 2455698 8998665 55555443
No 119
>PRK13938 phosphoheptose isomerase; Provisional
Probab=74.05 E-value=5.9 Score=34.02 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=43.5
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECcH
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 137 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~~ 137 (240)
...+.+-|++|++-.|....-.-.....++++|+++|.| +....+..+.+|+.|.-..
T Consensus 108 ~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~ 166 (196)
T PRK13938 108 EGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPS 166 (196)
T ss_pred HhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCC
Confidence 345567799999999988777777777889999998877 4445566677887776433
No 120
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=73.96 E-value=5.9 Score=30.24 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=42.7
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECcHH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~~d 138 (240)
...+-|++|++-.|..-.....+...++++|++++.| +...++..+.+|+.|.-...
T Consensus 57 ~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCC
Confidence 4567799999999998776777777788899998776 44455666677877765443
No 121
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=73.85 E-value=1.4 Score=42.74 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=54.2
Q ss_pred ccEEEcCCCCChh---hHHHHHHHhccCCEEEEEcCCCCccccccc---------h-hhhhcCCCEEEEEcCCCCC-C--
Q 026284 62 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACNL---------P-LKSLRGGGKIVIVNLQQTP-K-- 125 (240)
Q Consensus 62 P~IV~FGE~lp~~---~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~l---------p-~~a~~~g~~lViIN~q~t~-~-- 125 (240)
=||++=+-.+|.+ ++++.-+...++|++||||..=.|.|+++- | ..+.+ -..+|+++..-.+ +
T Consensus 356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~-ak~Viv~Krsm~~Gyag 434 (463)
T PF02233_consen 356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWK-AKQVIVIKRSMSPGYAG 434 (463)
T ss_dssp HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGG-SSEEEEEESSS--TTTS
T ss_pred ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhh-cCeEEEEEcCCCCCCCC
Confidence 3677666677765 577777789999999999999999998665 2 12222 2256666655322 1
Q ss_pred ------CCcccEEEECcHHHHHHHHHHHh
Q 026284 126 ------DKKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 126 ------d~~adl~I~g~~devl~~L~~~L 148 (240)
.+.....+.||+.+.+.++.++|
T Consensus 435 v~NpLF~~~nt~MlfGDAk~~~~~l~~~~ 463 (463)
T PF02233_consen 435 VDNPLFYKDNTRMLFGDAKKTLEELVAEL 463 (463)
T ss_dssp -S-GGGGSTTEEEEES-HHHHHHHHHHHH
T ss_pred CCCcceecCCcEEEeccHHHHHHHHHHhC
Confidence 23345679999999999998875
No 122
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=73.74 E-value=4.5 Score=41.51 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=39.1
Q ss_pred HHhccCCEEEEEcCCCCcc-c-c---ccchhhhh-cCCCEEEEEcCCCCCCC---CcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQIT-P-A---CNLPLKSL-RGGGKIVIVNLQQTPKD---KKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-P-a---~~lp~~a~-~~g~~lViIN~q~t~~d---~~adl~I~g~ 136 (240)
..+.+||++|++||..... | . .+....++ ++|+++|.|++..|... ..+|++|.=+
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpIr 271 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVPIK 271 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEECCC
Confidence 3457899999999987543 2 1 12222344 47899999999988866 6788887543
No 123
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=72.41 E-value=5.8 Score=37.15 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=30.9
Q ss_pred HHHhccCCEEEEEcCCCCc-cc-cccchhhhhcCCCEEEEEcCCCCC
Q 026284 80 EENCRMADVVLCLGTSLQI-TP-ACNLPLKSLRGGGKIVIVNLQQTP 124 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V-~P-a~~lp~~a~~~g~~lViIN~q~t~ 124 (240)
...+.+||++|++|+.... .| .......++++|++++.|++..+.
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 3467789999999998632 22 111123466789999999997654
No 124
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=72.07 E-value=3.1 Score=34.50 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=25.0
Q ss_pred cccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc
Q 026284 16 LLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 61 (240)
Q Consensus 16 l~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR 61 (240)
-....|..|+.+|+..+.+. ..-.|| .||+.|.
T Consensus 107 ~~~Y~Cp~c~~r~tf~eA~~-----------~~F~Cp--~Cg~~L~ 139 (158)
T TIGR00373 107 NMFFICPNMCVRFTFNEAME-----------LNFTCP--RCGAMLD 139 (158)
T ss_pred CCeEECCCCCcEeeHHHHHH-----------cCCcCC--CCCCEee
Confidence 34567999999999877653 256799 9999754
No 125
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=71.87 E-value=6.8 Score=32.35 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=45.0
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECc
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~ 136 (240)
.+.+-|++|++--|....-.-.....++++|+++|-| |....++.+.+|+.|.-.
T Consensus 98 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 98 LGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 4677899999999998877888888889999999887 666677778888877644
No 126
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=71.81 E-value=4.6 Score=30.96 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=43.2
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECcH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 137 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~~ 137 (240)
.+.+-|++|++--|..-.-.......++++|+++|.| |....+..+.+|+.|.-.+
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 4678899999999998777777777888999988866 5555666677777776544
No 127
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=71.52 E-value=10 Score=30.86 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=42.3
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEEC
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 135 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g 135 (240)
.+.+-|++|++-.|....-.......++++|+++|.| +....+..+.+|+.|.-
T Consensus 76 ~~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~ 130 (154)
T TIGR00441 76 LGQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRV 130 (154)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 3477899999999998777778888889999998877 44455666778877763
No 128
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=71.40 E-value=3.6 Score=34.91 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=25.8
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccc
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 62 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP 62 (240)
....|..|+.+|+..+.+. ..-.|| .||+.|..
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~-----------~~F~Cp--~Cg~~L~~ 148 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME-----------YGFRCP--QCGEMLEE 148 (178)
T ss_pred CEEECCCCCcEEeHHHHhh-----------cCCcCC--CCCCCCee
Confidence 4567999999999876542 356799 99998876
No 129
>PRK04940 hypothetical protein; Provisional
Probab=71.33 E-value=3.4 Score=35.23 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=51.0
Q ss_pred cccEEEc--CCCCChhhHHHHHHHhcc----C--CEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEE
Q 026284 61 KDTVLDW--EDALPPVEMNPAEENCRM----A--DVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLV 132 (240)
Q Consensus 61 RP~IV~F--GE~lp~~~l~~a~~~~~~----a--DLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~ 132 (240)
.|++.+. ....|.+.+..+.+.+.+ . +=+++|||||-=+-|..| +.+.|.+-|+||+.-.|.....+..
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~L---a~~~g~~aVLiNPAv~P~~~L~~~i 102 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERI---GFLCGIRQVIFNPNLFPEENMEGKI 102 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHH---HHHHCCCEEEECCCCChHHHHHHHh
Confidence 5666543 333455556655555431 1 347889999987766665 4467899999999988854211110
Q ss_pred -EECcHHHHHHHHHHHhccc
Q 026284 133 -VHAPVDKVIAGVMRHLNLW 151 (240)
Q Consensus 133 -I~g~~devl~~L~~~Lg~~ 151 (240)
.+..-.++-++-++.|...
T Consensus 103 g~~~~y~~~~~~h~~eL~~~ 122 (180)
T PRK04940 103 DRPEEYADIATKCVTNFREK 122 (180)
T ss_pred CCCcchhhhhHHHHHHhhhc
Confidence 0000115556666666643
No 130
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=71.28 E-value=7.9 Score=36.87 Aligned_cols=87 Identities=25% Similarity=0.315 Sum_probs=57.2
Q ss_pred cccEEEcCCCCChh---hHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCC--------EEEEEcCCCC--CC--
Q 026284 61 KDTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGG--------KIVIVNLQQT--PK-- 125 (240)
Q Consensus 61 RP~IV~FGE~lp~~---~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~--------~lViIN~q~t--~~-- 125 (240)
+-||++=+-..|.+ ++++.-+...++|++||||.-=.|.|+++=- ...=.|. +.++++...- .+
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D-~SPI~GMPiLeV~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDD-NSPIAGMPVLEVWKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccC-CCCcCCCceeeeeccceEEEEeccccccccc
Confidence 34677777777865 4666667788899999999999999886543 1112233 4444443321 11
Q ss_pred -C-----CcccEEEECcHHHHHHHHHHHh
Q 026284 126 -D-----KKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 126 -d-----~~adl~I~g~~devl~~L~~~L 148 (240)
| +....-+.||+.+..+++.+.|
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhcC
Confidence 1 1235678999999999988764
No 131
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=70.92 E-value=5.3 Score=39.77 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=37.7
Q ss_pred HHhccCCEEEEEcCCCCcc-cccc-chhhhhcCC-CEEEEEcCCCCCCCCcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQIT-PACN-LPLKSLRGG-GKIVIVNLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa~~-lp~~a~~~g-~~lViIN~q~t~~d~~adl~I~g~ 136 (240)
..+.+||++|++|+-.... |... -...+.++| +++|.||+..+.....+|.++.-.
T Consensus 358 ~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~ 416 (603)
T TIGR01973 358 ADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFH 416 (603)
T ss_pred HHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeec
Confidence 3557799999999976432 2111 112344444 899999999888877788776543
No 132
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=70.49 E-value=2.6 Score=34.75 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=21.2
Q ss_pred cccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC
Q 026284 16 LLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS 58 (240)
Q Consensus 16 l~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG 58 (240)
.-..+|.+||+...+. .....|.|| +||+
T Consensus 110 ~G~l~C~~Cg~~~~~~------------~~~~l~~Cp--~C~~ 138 (146)
T PF07295_consen 110 PGTLVCENCGHEVELT------------HPERLPPCP--KCGH 138 (146)
T ss_pred CceEecccCCCEEEec------------CCCcCCCCC--CCCC
Confidence 4578999999886542 123589999 8986
No 133
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=69.98 E-value=8.5 Score=32.70 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=43.1
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECcH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPV 137 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~~ 137 (240)
..++-|++|++-.|....-.......++++|+++|.| +....+..+.+|+.|.-..
T Consensus 108 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 108 VGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 3467799999999998777777788889999998877 4455666667787776444
No 134
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=69.98 E-value=4.4 Score=33.46 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=42.8
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECc
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~ 136 (240)
.+.+-|++|++.-|............++++|++++.| +....+..+.+|+.+.-.
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 4677899999999998787888888889999999877 555666666677766543
No 135
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=69.44 E-value=7.1 Score=35.08 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=53.8
Q ss_pred cccccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEEC
Q 026284 59 RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 135 (240)
Q Consensus 59 ~LRP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g 135 (240)
.+...+...++..-. + .....+..-|++|++.=|....-.-.....++++|+++|-| +...++..+.+|+.+..
T Consensus 154 ~ig~~~~~~~d~~~~--~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 154 RIGLNVVALSDTHGQ--L-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred HcCCceeEecchHHH--H-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 345555555544322 2 34556778899999999998777777778889999999888 44477888888887775
No 136
>PRK07586 hypothetical protein; Validated
Probab=69.03 E-value=20 Score=34.74 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=33.6
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchh---hhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPL---KSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~---~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
..+.+.+++|||+|++||++... ...... ........++.++. ..+++..+|.+|.+.|.
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~d~~~~l~~L~~~l~ 316 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKAPVA-FFAYPGKPSRLVPEGCEVHTLAG------------PGEDAAAALEALADALG 316 (514)
T ss_pred HHHHHHHhcCCEEEEECCCCccc-ccccCCCccccCCCCceEEEECC------------CcccHHHHHHHHHHhhc
Confidence 34556788999999999985211 100000 00111223332211 13789999999988774
No 137
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=67.96 E-value=6.8 Score=40.54 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHhccCCEEEEEcCCCCcc-cc--ccchhhhh--cCCCEEEEEcCCCCCCCCcccEEEEC
Q 026284 81 ENCRMADVVLCLGTSLQIT-PA--CNLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVHA 135 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa--~~lp~~a~--~~g~~lViIN~q~t~~d~~adl~I~g 135 (240)
+.+.+||++|++|+-.... |. ..+. .++ ++|+++|.|++..+.....+|.+|.=
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~-~a~~~~~G~kiiviDPr~t~ta~~ad~~l~i 260 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVT-DRRLSNPDVKVAVLSTFEHRSFELADNGIIF 260 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHH-HHHhcCCCCeEEEECCCCCchhHhcCeeecc
Confidence 3557899999999976442 21 1221 122 47999999999988876778877653
No 138
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=67.78 E-value=10 Score=36.89 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=42.9
Q ss_pred HhccCCEEEEEcCCCCcc---ccc--cchhhhhcCC-----CEEEEEcCCCCCCCCcccEEEECc--HH-HHHHHHHHHh
Q 026284 82 NCRMADVVLCLGTSLQIT---PAC--NLPLKSLRGG-----GKIVIVNLQQTPKDKKASLVVHAP--VD-KVIAGVMRHL 148 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~---Pa~--~lp~~a~~~g-----~~lViIN~q~t~~d~~adl~I~g~--~d-evl~~L~~~L 148 (240)
.+.+||++|++|+-.... |.. +....++++| .++|.|++..+.....+|.+|.=. .| .++-.+++.|
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~irPGtD~al~lam~~~i 272 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAIRPSQEKAFALGLAHKL 272 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceeccCcccHHHHHHHHHHHH
Confidence 457899999999987544 211 1112334444 499999999998878888887543 22 3334455444
No 139
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=67.57 E-value=5.8 Score=32.82 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=43.7
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECcHH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~~d 138 (240)
.+.+-|++|++.-|..-.-...+...++++|+++|.| +....+..+.+|+.|.-..+
T Consensus 72 ~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~ 129 (179)
T cd05005 72 AIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAA 129 (179)
T ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCc
Confidence 4577899999999998777777888889999998776 44556666677777664443
No 140
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=67.46 E-value=7.8 Score=39.65 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=43.6
Q ss_pred hccCCEEEEEcCCCCc-ccccc----chhhhhcCCCEEEEEcCCCCCCCCcccEEEE--CcHHH-HHHHHHHHh
Q 026284 83 CRMADVVLCLGTSLQI-TPACN----LPLKSLRGGGKIVIVNLQQTPKDKKASLVVH--APVDK-VIAGVMRHL 148 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V-~Pa~~----lp~~a~~~g~~lViIN~q~t~~d~~adl~I~--g~~de-vl~~L~~~L 148 (240)
++.||++|++|+...- .|... ....+++.|+++|.|++..|..-..+|.+|. =..|- ++..|++.|
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l~irPGTD~Al~~gi~~~l 270 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWLPIRPGTDAALALGIAHVL 270 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCccccCCCcHHHHHHHHHHHH
Confidence 8999999999998776 55333 2223356778999999999876666665544 33343 333455444
No 141
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=67.25 E-value=7.4 Score=40.10 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=38.9
Q ss_pred HHhccCCEEEEEcCCCCcc-ccc----cchhhhh-cCCCEEEEEcCCCCCCC-CcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQIT-PAC----NLPLKSL-RGGGKIVIVNLQQTPKD-KKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa~----~lp~~a~-~~g~~lViIN~q~t~~d-~~adl~I~g~ 136 (240)
..+.+||++|++|+-..+. |.. .....++ ++|+++|.|++..|... ..+|.+|.=+
T Consensus 227 ~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~ir 289 (814)
T PRK14990 227 SDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIR 289 (814)
T ss_pred HHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECCC
Confidence 3556899999999986654 211 1122344 57999999999988864 4688877644
No 142
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=66.99 E-value=11 Score=31.91 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHh---ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEEC-cHHHHHHHH
Q 026284 79 AEENC---RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA-PVDKVIAGV 144 (240)
Q Consensus 79 a~~~~---~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g-~~devl~~L 144 (240)
+.+.+ .++||+|.+|+. +|..+......++-+++..|.+.... ...|++.+-. +-++.+..|
T Consensus 99 ~~e~~~g~~~~DlvlfvG~~---~~~~~~~l~~lk~f~~~~~~~~~~~y-~~~a~~s~~~~~~~~~~~~l 164 (171)
T PRK00945 99 NWKGLDGNGNYDLVIFIGVT---YYYASQGLSALKHFSPLKTITIDRYY-HPNADMSFPNLSKEEYLEYL 164 (171)
T ss_pred hhhhhcCCCCcCEEEEecCC---chhHHHHHHHHhhcCCceEEEecCCc-CCCCceecCCCCHHHHHHHH
Confidence 34455 689999999998 46666655555655666666666655 3456666422 234444433
No 143
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=66.88 E-value=11 Score=34.89 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=31.9
Q ss_pred HHhccCCEEEEEcCCCCcc-ccccc-hhhh-hcCCCEEEEEcCCCCCCCCccc
Q 026284 81 ENCRMADVVLCLGTSLQIT-PACNL-PLKS-LRGGGKIVIVNLQQTPKDKKAS 130 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa~~l-p~~a-~~~g~~lViIN~q~t~~d~~ad 130 (240)
..+.+||++|++|+-+... |.... ...+ +++|++++.|++..+..-..++
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~ 193 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDH 193 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhcc
Confidence 3568899999999977432 42222 1223 3468999999988765333333
No 144
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=66.73 E-value=3.3 Score=27.97 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=19.9
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
...|..||+.++..+ ...+-+|| .||..
T Consensus 6 ~Y~C~~Cg~~~~~~~------------~~~~irCp--~Cg~r 33 (49)
T COG1996 6 EYKCARCGREVELDQ------------ETRGIRCP--YCGSR 33 (49)
T ss_pred EEEhhhcCCeeehhh------------ccCceeCC--CCCcE
Confidence 468999999875321 23567899 99963
No 145
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=66.63 E-value=2.5 Score=28.04 Aligned_cols=32 Identities=9% Similarity=0.299 Sum_probs=20.8
Q ss_pred cccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC
Q 026284 16 LLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS 58 (240)
Q Consensus 16 l~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG 58 (240)
++..+|..||..|+.. ..+ +. .....|| .||+
T Consensus 3 ~Yey~C~~Cg~~fe~~---~~~-----~~-~~~~~CP--~Cg~ 34 (52)
T TIGR02605 3 IYEYRCTACGHRFEVL---QKM-----SD-DPLATCP--ECGG 34 (52)
T ss_pred CEEEEeCCCCCEeEEE---Eec-----CC-CCCCCCC--CCCC
Confidence 3567899999987742 111 11 2456799 8997
No 146
>PRK06260 threonine synthase; Validated
Probab=66.60 E-value=3.3 Score=39.09 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=20.1
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 61 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR 61 (240)
+..+|..||++|+..+ ....|| .|||.|.
T Consensus 2 ~~~~C~~cg~~~~~~~--------------~~~~Cp--~cg~~l~ 30 (397)
T PRK06260 2 YWLKCIECGKEYDPDE--------------IIYTCP--ECGGLLE 30 (397)
T ss_pred CEEEECCCCCCCCCCC--------------ccccCC--CCCCeEE
Confidence 4689999999877432 235688 7887643
No 147
>PRK12474 hypothetical protein; Provisional
Probab=66.00 E-value=23 Score=34.45 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=34.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchh---hhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPL---KSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~---~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.+.+++||++|+|||++... ...... .......+++.++. ..+++.+++..|.+.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~------------~~~d~~~~l~~L~~~l~ 320 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQ------------PDEDLAQALQDLADAVD 320 (518)
T ss_pred HHHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECC------------CCcCHHHHHHHHHHhcc
Confidence 3456788999999999986321 100000 00112345554442 12788999999888764
No 148
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=65.90 E-value=8.4 Score=39.49 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHhccCCEEEEEcCCCCcccc------ccchhhhhcCCCEEEEEcCCCCCCC-CcccEEEECc
Q 026284 81 ENCRMADVVLCLGTSLQITPA------CNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAP 136 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa------~~lp~~a~~~g~~lViIN~q~t~~d-~~adl~I~g~ 136 (240)
..+.+||++|++|+.....-. ..+...++++|+++|.|++..|..- ..+|.+|.=+
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ir 272 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIR 272 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCC
Confidence 456789999999998755421 1122222368999999999988753 4688877543
No 149
>PRK15482 transcriptional regulator MurR; Provisional
Probab=65.51 E-value=9.3 Score=34.06 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=46.1
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcC-CCCCCCCcccEEEECcHH
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~-q~t~~d~~adl~I~g~~d 138 (240)
...+.+-|++|++.-|............++++|+++|.|-- ...+..+.+|+.|.-..+
T Consensus 177 ~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~ 236 (285)
T PRK15482 177 SQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSG 236 (285)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCC
Confidence 34567789999999999988888888888999999988844 456677778887765443
No 150
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=64.47 E-value=11 Score=35.07 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=34.8
Q ss_pred ccCCEEEEEcCCCCcc-cc--ccc-------hhhhhcCCCEEEEEcCCCCCCCCcccEEEE
Q 026284 84 RMADVVLCLGTSLQIT-PA--CNL-------PLKSLRGGGKIVIVNLQQTPKDKKASLVVH 134 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~-Pa--~~l-------p~~a~~~g~~lViIN~q~t~~d~~adl~I~ 134 (240)
++||++|++|+-.... |. .++ .....++|++++.|++..+.....+|.+|.
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 4799999999875433 21 111 011126788999999999887777887765
No 151
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=64.41 E-value=5.2 Score=32.64 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=26.0
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccc
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 62 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP 62 (240)
....|..|+..|+..+.+...+ ....-.|| .||+.|..
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~d------~~~~f~Cp--~Cg~~l~~ 135 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLLD------MDGTFTCP--RCGEELEE 135 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhcC------CCCcEECC--CCCCEEEE
Confidence 3567999999999776654321 11226799 99997654
No 152
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=63.74 E-value=20 Score=34.49 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=51.9
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchhhhhcC--CCEEEEEcCCCCCCC-------CcccEEEECcHHHHHHHHHHH
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRG--GGKIVIVNLQQTPKD-------KKASLVVHAPVDKVIAGVMRH 147 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~--g~~lViIN~q~t~~d-------~~adl~I~g~~devl~~L~~~ 147 (240)
+...+...+.|++.+-.++.+...+..+....++. ++++|+--...|... ...|+++.|..+..+.+|++.
T Consensus 60 ~~~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~g 139 (472)
T TIGR03471 60 DDTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAEG 139 (472)
T ss_pred HHHHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHcC
Confidence 34445667899999888888877777777665544 677777766665421 246899999999999888753
No 153
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=63.19 E-value=3.8 Score=26.71 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=18.9
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS 58 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG 58 (240)
..+|.+||..+..++. ....+|| .||+
T Consensus 3 ~y~C~~CG~~~~~~~~------------~~~~~Cp--~CG~ 29 (46)
T PRK00398 3 EYKCARCGREVELDEY------------GTGVRCP--YCGY 29 (46)
T ss_pred EEECCCCCCEEEECCC------------CCceECC--CCCC
Confidence 4689999988664321 1256899 8996
No 154
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=62.52 E-value=4.7 Score=24.97 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=22.1
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 61 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR 61 (240)
...|.+|+..|...+.. +.......+|+ +|+..+.
T Consensus 2 ~~~CP~C~~~~~v~~~~-------~~~~~~~v~C~--~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ-------LGANGGKVRCG--KCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHH-------cCCCCCEEECC--CCCCEEE
Confidence 36799999987764321 11122346799 8997653
No 155
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=61.89 E-value=10 Score=41.19 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=44.5
Q ss_pred hccCCEEEEEcCCCCcc--ccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECc--HHHHHHH
Q 026284 83 CRMADVVLCLGTSLQIT--PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP--VDKVIAG 143 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~--Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~--~devl~~ 143 (240)
..+|+++|+.|+..... |.+.....++.+|+++|.|.+.-+.....+|.+|.=+ .|-+|..
T Consensus 243 ~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~ALaL 307 (1235)
T TIGR01580 243 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAALAL 307 (1235)
T ss_pred hhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHHHH
Confidence 34899999999986443 3344445678899999999999988777888876543 5554443
No 156
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=61.45 E-value=12 Score=33.07 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=44.8
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcC-CCCCCCCcccEEEEC
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDKKASLVVHA 135 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~-q~t~~d~~adl~I~g 135 (240)
..+...+.+-|++|++.-|............|+++|+++|.|-- ...+..+.+|+.|..
T Consensus 167 ~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 167 LATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 34455678899999998888866667777788999999988844 455666778888864
No 157
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=60.37 E-value=3.7 Score=33.35 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=17.0
Q ss_pred eecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC
Q 026284 20 TAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS 58 (240)
Q Consensus 20 ~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG 58 (240)
+|++||+.|+... +.-..-|| .|||
T Consensus 3 ~Ct~Cg~~f~dgs------------~eil~GCP--~CGg 27 (131)
T PF09845_consen 3 QCTKCGRVFEDGS------------KEILSGCP--ECGG 27 (131)
T ss_pred ccCcCCCCcCCCc------------HHHHccCc--ccCC
Confidence 6999999877432 11234599 8987
No 158
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=60.06 E-value=5.2 Score=31.17 Aligned_cols=11 Identities=0% Similarity=-0.254 Sum_probs=9.6
Q ss_pred eecCCCcccch
Q 026284 20 TAILFEKFAHL 30 (240)
Q Consensus 20 ~C~~C~~~~~~ 30 (240)
+|++||+.|+.
T Consensus 4 ~CtrCG~vf~~ 14 (112)
T COG3364 4 QCTRCGEVFDD 14 (112)
T ss_pred eeccccccccc
Confidence 69999999875
No 159
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=59.18 E-value=16 Score=36.30 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=49.4
Q ss_pred EcCCCCChh--------hHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcH
Q 026284 66 DWEDALPPV--------EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPV 137 (240)
Q Consensus 66 ~FGE~lp~~--------~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~ 137 (240)
.|+|..|.. .-....++.+.||++|++|+-+.=+-...+-..- +-..++.++......... .+ =.=..
T Consensus 249 ~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~--~~~~~i~~~~~~v~I~~~-~f-~~l~m 324 (557)
T COG3961 249 VIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQY--KPANIIEIHPDSVKIKDA-VF-TNLSM 324 (557)
T ss_pred cccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeec--CcccEEEeccCeeEeccc-cc-CCeeH
Confidence 356666642 2236778899999999999998877777775432 225788888776543211 11 01235
Q ss_pred HHHHHHHHHHh
Q 026284 138 DKVIAGVMRHL 148 (240)
Q Consensus 138 devl~~L~~~L 148 (240)
.++|++|.+.+
T Consensus 325 ~~~L~~L~~~i 335 (557)
T COG3961 325 KDALQELAKKI 335 (557)
T ss_pred HHHHHHHHHHh
Confidence 56777776665
No 160
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=59.09 E-value=17 Score=32.06 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=43.4
Q ss_pred HHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEEC
Q 026284 81 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 135 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g 135 (240)
..+.+-|++|++.-|............|+++|+++|.|--...+..+.+|+.|.-
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 4557789999999998877777777788999999999865556666777877753
No 161
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=58.41 E-value=19 Score=40.52 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHhccCCEEEEEcCCCCcc-ccccchhhhhcCCCEEEEEcCCCCCCCC--cccEEEECcHHHHHHHHHHH
Q 026284 81 ENCRMADVVLCLGTSLQIT-PACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRH 147 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa~~lp~~a~~~g~~lViIN~q~t~~d~--~adl~I~g~~devl~~L~~~ 147 (240)
..+.++|++|++|+.+.-. ....+... . . ..+|.|+..+...+. ..++.|.+++.+++..|.+.
T Consensus 594 ~~~~~aDlVl~iG~rl~s~~~t~~~~~~-~-~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~ 660 (1655)
T PLN02980 594 RNWIQFDVVIQIGSRITSKRVSQMLEKC-F-P-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKA 660 (1655)
T ss_pred hccCCCCEEEEeCCccccHHHHHHHHhC-C-C-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhc
Confidence 3457899999999998522 22122111 1 1 258889988877653 45789999999999887663
No 162
>PRK11032 hypothetical protein; Provisional
Probab=58.30 E-value=6.4 Score=33.03 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=19.8
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS 58 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG 58 (240)
.+.|.+||+...+. .....|.|| +||+
T Consensus 124 ~LvC~~Cg~~~~~~------------~p~~i~pCp--~C~~ 150 (160)
T PRK11032 124 NLVCEKCHHHLAFY------------TPEVLPLCP--KCGH 150 (160)
T ss_pred eEEecCCCCEEEec------------CCCcCCCCC--CCCC
Confidence 57899999875531 124679999 8996
No 163
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=57.98 E-value=13 Score=34.01 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=44.6
Q ss_pred CEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 026284 87 DVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 87 DLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t-~~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.|.|.+|-|..|.=.+.+ +...-|+-||.++. |.-.-+|+-|.|+.=+++|+|-++|+
T Consensus 276 eLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 276 ELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 477888888777665554 23346788999875 55567899999999999999999875
No 164
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=57.77 E-value=8.6 Score=31.40 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC-----CCcccE---EEECcHHHHHHHHHHH
Q 026284 76 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-----DKKASL---VVHAPVDKVIAGVMRH 147 (240)
Q Consensus 76 l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~-----d~~adl---~I~g~~devl~~L~~~ 147 (240)
...+.+.+.+||++|+-|||+.=-...++...++ ++..++++=+...-. +...+. .+--+.+.++..+.+-
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~G 131 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEG 131 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTT
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcC
Confidence 3467788999999999999998666666666554 567788876653222 222222 1244677777665544
Q ss_pred hc
Q 026284 148 LN 149 (240)
Q Consensus 148 Lg 149 (240)
-|
T Consensus 132 gg 133 (147)
T PF04016_consen 132 GG 133 (147)
T ss_dssp SH
T ss_pred CC
Confidence 33
No 165
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=57.16 E-value=21 Score=30.57 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=42.7
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCc---ccEEEECcH
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKK---ASLVVHAPV 137 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~---adl~I~g~~ 137 (240)
.....++-|++|++-+|..-.........|+++|+++|-| +....+..+. +|+.|.=+.
T Consensus 103 l~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~ 165 (196)
T PRK10886 103 VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPS 165 (196)
T ss_pred HHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCC
Confidence 3445677899999999999777777778889999998877 4445555443 466665443
No 166
>PRK12496 hypothetical protein; Provisional
Probab=57.16 E-value=7.5 Score=32.50 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=19.4
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 61 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR 61 (240)
..+|..|++.|+.. ...-.|| .||..|+
T Consensus 127 ~~~C~gC~~~~~~~--------------~~~~~C~--~CG~~~~ 154 (164)
T PRK12496 127 RKVCKGCKKKYPED--------------YPDDVCE--ICGSPVK 154 (164)
T ss_pred eEECCCCCccccCC--------------CCCCcCC--CCCChhh
Confidence 35699999887631 1234699 8998765
No 167
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=56.98 E-value=14 Score=33.85 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC-C---CCCcccEEEEC---cHHHHHHHHHHHh
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-P---KDKKASLVVHA---PVDKVIAGVMRHL 148 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t-~---~d~~adl~I~g---~~devl~~L~~~L 148 (240)
...+.+.++|++||||..-. .-..+|...|+++|.+-+.|+-..- + +.....+-|-+ -.|.+..+++++|
T Consensus 205 Avk~la~~~Dl~iVVG~~nS-SNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l 281 (294)
T COG0761 205 AVKELAPEVDLVIVVGSKNS-SNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKL 281 (294)
T ss_pred HHHHHhhcCCEEEEECCCCC-ccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHH
Confidence 44556678999999998543 6677888889999998888854422 2 12222333443 2456667776665
No 168
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=56.70 E-value=5.6 Score=30.40 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=42.5
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc-CCCCCCCCcccEEEECc
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVHAP 136 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN-~q~t~~d~~adl~I~g~ 136 (240)
...+.+-|++|++..|..-.........++++|+++|.|- ....+..+.+|..|.-.
T Consensus 48 ~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 48 LENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp GGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred cccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 3455677899999999988888888888889999998874 34455556666666543
No 169
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=56.41 E-value=16 Score=32.65 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=42.4
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEEC
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 135 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g 135 (240)
....+.+-|++|++--|..-.-...+...|+++|+++|.| +...++..+.+|+.|.-
T Consensus 181 ~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 181 SAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 3445678899999998888666777777888999999887 34455666667777653
No 170
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=56.18 E-value=20 Score=36.88 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=31.9
Q ss_pred HHHhccCCEEEEEcCCCCcc-cc-ccchhhhhcCCCEEEEEcCCCCCC
Q 026284 80 EENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQTPK 125 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~-Pa-~~lp~~a~~~g~~lViIN~q~t~~ 125 (240)
...+.+||++|++|+-.... |. ......++++|+++|.|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 34567899999999975432 21 112234567899999999987754
No 171
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=55.77 E-value=13 Score=38.65 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHhccCCEEEEEcCCCCcccc---ccchhhhh--cCCCEEEEEcCCCCCCCCcccEEEEC
Q 026284 81 ENCRMADVVLCLGTSLQITPA---CNLPLKSL--RGGGKIVIVNLQQTPKDKKASLVVHA 135 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa---~~lp~~a~--~~g~~lViIN~q~t~~d~~adl~I~g 135 (240)
+.+.+||++|++|+-....-. ..+ ..++ ++|+++|.|++..+.....+|++|.=
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i-~~a~~~~~GakliviDPr~t~ta~~Ad~~l~i 260 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRV-TDRRLSHPKVKVVVLSTFTHRSFDLADIGIIF 260 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHH-HHHHhccCCCEEEEECCCCCchhHHhCeeecc
Confidence 455789999999997554311 112 1223 46999999999988876677876653
No 172
>PRK07591 threonine synthase; Validated
Probab=55.76 E-value=8.2 Score=36.85 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=22.1
Q ss_pred ccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccc
Q 026284 15 NLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 62 (240)
Q Consensus 15 sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP 62 (240)
.+..++|..||++|+.. .. .+|| .|||.|..
T Consensus 15 ~~~~l~C~~Cg~~~~~~--------------~~-~~C~--~cg~~l~~ 45 (421)
T PRK07591 15 PAVALKCRECGAEYPLG--------------PI-HVCE--ECFGPLEV 45 (421)
T ss_pred ceeEEEeCCCCCcCCCC--------------CC-ccCC--CCCCeEEE
Confidence 45668999999987742 12 5698 79886653
No 173
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=55.48 E-value=5.8 Score=30.99 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=17.9
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
...+|..||+.|+..++. -.|| .||+.
T Consensus 69 ~~~~C~~Cg~~~~~~~~~--------------~~CP--~Cgs~ 95 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDEFD--------------FSCP--RCGSP 95 (113)
T ss_dssp -EEEETTTS-EEECHHCC--------------HH-S--SSSSS
T ss_pred CcEECCCCCCEEecCCCC--------------CCCc--CCcCC
Confidence 468999999998875432 2399 89975
No 174
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=55.07 E-value=3.6 Score=38.48 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=29.5
Q ss_pred cccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccE
Q 026284 12 QGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTV 64 (240)
Q Consensus 12 HG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~I 64 (240)
=| -.+...|..|..+|.+++... .--+|| +|||.++-.|
T Consensus 241 LG-KY~~TAC~rC~t~y~le~A~~-----------~~wrCp--kCGg~ikKGV 279 (403)
T COG1379 241 LG-KYHLTACSRCYTRYSLEEAKS-----------LRWRCP--KCGGKIKKGV 279 (403)
T ss_pred cc-chhHHHHHHhhhccCcchhhh-----------hcccCc--ccccchhhhH
Confidence 36 667788999999999876532 124699 9999888766
No 175
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=54.57 E-value=5.6 Score=31.39 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=19.2
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
...+|..||..++..++ ...+|| .||+.
T Consensus 70 ~~~~C~~Cg~~~~~~~~-------------~~~~CP--~Cgs~ 97 (117)
T PRK00564 70 VELECKDCSHVFKPNAL-------------DYGVCE--KCHSK 97 (117)
T ss_pred CEEEhhhCCCccccCCc-------------cCCcCc--CCCCC
Confidence 36889999977664321 234699 89974
No 176
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=54.53 E-value=24 Score=36.88 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHhccCCEEEEEcCCCCc-cccccc-hhhhh-cCCCEEEEEcCCCCCC-CC--cccEEE--ECcHHH-HHHHHHHHhc
Q 026284 81 ENCRMADVVLCLGTSLQI-TPACNL-PLKSL-RGGGKIVIVNLQQTPK-DK--KASLVV--HAPVDK-VIAGVMRHLN 149 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V-~Pa~~l-p~~a~-~~g~~lViIN~q~t~~-d~--~adl~I--~g~~de-vl~~L~~~Lg 149 (240)
+.+.+||++|++|+-+.- .|.... ...|. ++|++++.|++-.+.. .. .+++++ .-..|. ++..|++.+.
T Consensus 366 ~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~ii 443 (819)
T PRK08493 366 EDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKFL 443 (819)
T ss_pred HHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHHH
Confidence 346789999999996532 332221 12343 5889999999888754 22 234555 333443 4455555553
No 177
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=54.25 E-value=19 Score=33.14 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=12.0
Q ss_pred hhhhhcCCCEEEEEcCC
Q 026284 105 PLKSLRGGGKIVIVNLQ 121 (240)
Q Consensus 105 p~~a~~~g~~lViIN~q 121 (240)
...|.+.+.|+|++.-.
T Consensus 161 ~e~A~~~rlPlV~l~~S 177 (296)
T CHL00174 161 IEYATNESLPLIIVCAS 177 (296)
T ss_pred HHHHHHcCCCEEEEECC
Confidence 34567788899888554
No 178
>PRK13936 phosphoheptose isomerase; Provisional
Probab=53.95 E-value=22 Score=30.19 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcC-CCCCCCC---cccEEEECcHHH
Q 026284 81 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL-QQTPKDK---KASLVVHAPVDK 139 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~-q~t~~d~---~adl~I~g~~de 139 (240)
...++-|++|++..|..-.-.-.+...++++|+++|-|-- ...+..+ .+|+.|.-..++
T Consensus 107 ~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 107 ALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred HhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 3446789999999999877677777788999999988743 4444444 377777655543
No 179
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=52.97 E-value=22 Score=31.02 Aligned_cols=54 Identities=22% Similarity=0.132 Sum_probs=42.6
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEEC
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 135 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g 135 (240)
.+.+-|++|++--|....-.......|+++|+++|.| |...++..+.+|+.|.-
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 4567899999999998888888888899999988766 55566776777777654
No 180
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=52.38 E-value=38 Score=32.49 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=53.4
Q ss_pred EEEcCCCCChhhHHHHHHHh-ccCCEEEEEcCCCCc----cccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHH
Q 026284 64 VLDWEDALPPVEMNPAEENC-RMADVVLCLGTSLQI----TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 64 IV~FGE~lp~~~l~~a~~~~-~~aDLvLVIGTSL~V----~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~d 138 (240)
.+.|...|+++.+....+.. ...+...=|||.|.. .|+-+++. |++.+|-.|.-+=+...-..-++-.
T Consensus 309 ~Iv~S~~Lde~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V~-------KLv~~~g~P~~KlSd~~~K~t~p~~ 381 (400)
T PRK05321 309 TLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIVI-------KLVECNGRPVAKLSDSPGKTMCDDP 381 (400)
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceEE-------EEEEECCeeeEEecCCCcccCCCCH
Confidence 58899999988776666653 456778999999964 33333332 6888887655432112223455566
Q ss_pred HHHHHHHHHhccc
Q 026284 139 KVIAGVMRHLNLW 151 (240)
Q Consensus 139 evl~~L~~~Lg~~ 151 (240)
+++..+.+.+|++
T Consensus 382 ~~~~~~~~~~~~~ 394 (400)
T PRK05321 382 EFLRYLRQVFGLP 394 (400)
T ss_pred HHHHHHHHHcCCC
Confidence 7788888888876
No 181
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=50.69 E-value=20 Score=32.46 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=43.0
Q ss_pred HHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEEC
Q 026284 81 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 135 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g 135 (240)
..+.+-|++|++-.|....-.......++++|+++|.| +....++.+.+|+.+.-
T Consensus 90 ~~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~ 145 (326)
T PRK10892 90 GMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCV 145 (326)
T ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEe
Confidence 34567899999999999888888888899999988777 44456677777877653
No 182
>PRK05580 primosome assembly protein PriA; Validated
Probab=50.50 E-value=26 Score=35.61 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=13.7
Q ss_pred hHHHHHHHhccCCEEEEEcCCCC
Q 026284 75 EMNPAEENCRMADVVLCLGTSLQ 97 (240)
Q Consensus 75 ~l~~a~~~~~~aDLvLVIGTSL~ 97 (240)
..+.+.+...+-+.-|+|||.+.
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhh
Confidence 35555556655555566788763
No 183
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=50.48 E-value=11 Score=39.89 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=36.0
Q ss_pred Eeccccc-----ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhc
Q 026284 10 EYQGRNL-----LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 84 (240)
Q Consensus 10 ElHG~sl-----~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~ 84 (240)
.|-| |+ ...+|++|+..|.. .+..-+|+ +|||.+-++|- .-++ +.-++.|.+.++
T Consensus 1000 Dl~G-NLRaFsrQ~fRC~kC~~kYRR--------------~PL~G~C~--kCGg~lilTV~--~GsV-~KYl~~s~~la~ 1059 (1095)
T TIGR00354 1000 DIIG-NLRAFSRQEVRCTKCNTKYRR--------------IPLVGKCL--KCGNNLTLTVS--KGSV-MKYLELSKFLAE 1059 (1095)
T ss_pred Hhhh-hHhhhhccceeecccCCcccc--------------CCCCCccc--ccCCeEEEEEe--cchh-HhhHHHHHHHHH
Confidence 3446 56 35899999987653 12345799 89999988873 1122 223555555555
Q ss_pred cCC
Q 026284 85 MAD 87 (240)
Q Consensus 85 ~aD 87 (240)
+.+
T Consensus 1060 ~Y~ 1062 (1095)
T TIGR00354 1060 NYN 1062 (1095)
T ss_pred HcC
Confidence 543
No 184
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.17 E-value=31 Score=33.83 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=14.4
Q ss_pred hHHHHHHHhccCCEEEEEcCCCC
Q 026284 75 EMNPAEENCRMADVVLCLGTSLQ 97 (240)
Q Consensus 75 ~l~~a~~~~~~aDLvLVIGTSL~ 97 (240)
.++...+...+-+.-|+|||.+.
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCccc
Confidence 34555666666556667888763
No 185
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=50.15 E-value=50 Score=31.60 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=50.0
Q ss_pred EEEcCCCCChhhHHHHHHHhcc-CCEEEEEcCCCCc----cccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHH
Q 026284 64 VLDWEDALPPVEMNPAEENCRM-ADVVLCLGTSLQI----TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVD 138 (240)
Q Consensus 64 IV~FGE~lp~~~l~~a~~~~~~-aDLvLVIGTSL~V----~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~d 138 (240)
++.|.+.|+++......+..+. .--..=|||.|.. .|+-+++. |++.+|-+|.-+-+...-..-++-.
T Consensus 309 ~iv~Sd~Lde~~i~~L~~~~~g~~~d~FGVGT~l~~d~~~~~~l~~V~-------Klv~~~g~P~~KlSd~~~K~t~~d~ 381 (394)
T TIGR01514 309 IIIFSDSLDVEKAIELSHYFKGRVKASFGIGTNLTNDFGKVEPLNIVI-------KLVECNGNPVAKLSDSPGKTMGEPA 381 (394)
T ss_pred EEEEcCCCCHHHHHHHHHHhcCCCceeEecCcceecCCCCCCCcceEE-------EEEEECCccceEecCCCcccCCCCH
Confidence 3679999998766666655443 3457889999986 45444432 6888887765432222223444445
Q ss_pred HHHHHHHHHhcc
Q 026284 139 KVIAGVMRHLNL 150 (240)
Q Consensus 139 evl~~L~~~Lg~ 150 (240)
+.+..+.+.+++
T Consensus 382 ~~~~~~~~~~~~ 393 (394)
T TIGR01514 382 TFLRALRELFDT 393 (394)
T ss_pred HHHHHHHHHhCC
Confidence 666777777664
No 186
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=49.15 E-value=20 Score=34.30 Aligned_cols=83 Identities=27% Similarity=0.337 Sum_probs=55.9
Q ss_pred CcccccEEEcCCCCChh--hHHHH----HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC----CC
Q 026284 58 SRLKDTVLDWEDALPPV--EMNPA----EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK----DK 127 (240)
Q Consensus 58 G~LRP~IV~FGE~lp~~--~l~~a----~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~----d~ 127 (240)
|.+|+|= .||+- +..+| .+++++||++|.+.|-|.-.-..++.. ...+++-|..+|... |+
T Consensus 311 GSIRDDG-----PLPdvitDv~~AQ~amR~~~~~a~~vimlaTmLHSIAtGNm~P----s~v~~~cVDInp~~VtKL~DR 381 (407)
T TIGR00300 311 GSIRDDG-----PLPDVITDVVRAQSKMRELLQGADMVLMLSTMLHSIAVGNLLP----SGVKTICVDINPAVVTKLSDR 381 (407)
T ss_pred eeccCCC-----CCCcchhhHHHHHHHHHHHhccCCeehhHHHHHHHHhhccccc----ccceEEEEECCHHHhhhhhcc
Confidence 6667653 56652 22233 445678999999999998888777743 223676666665432 22
Q ss_pred --cccEEEECcHHHHHHHHHHHhc
Q 026284 128 --KASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 128 --~adl~I~g~~devl~~L~~~Lg 149 (240)
....-|-.++..+++.|.+.|.
T Consensus 382 Gs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 382 GSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred CceeEEEEEecHHHHHHHHHHHHh
Confidence 2346688899999999999874
No 187
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=48.85 E-value=10 Score=21.75 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=16.3
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 60 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~L 60 (240)
...|.+||...+ .....|+ .||..|
T Consensus 2 ~~~Cp~Cg~~~~----------------~~~~fC~--~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEID----------------PDAKFCP--NCGAKL 26 (26)
T ss_pred cCCCcccCCcCC----------------cccccCh--hhCCCC
Confidence 357899997533 1345688 898654
No 188
>PRK02947 hypothetical protein; Provisional
Probab=48.13 E-value=30 Score=30.51 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=41.1
Q ss_pred HHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCC------------CCCCCcccEEEE
Q 026284 81 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ------------TPKDKKASLVVH 134 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~------------t~~d~~adl~I~ 134 (240)
..+..-|++|++-.|..-.-...+...++++|+++|.|--.+ .++.+.+|+.|.
T Consensus 102 ~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 102 YDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred cCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 355778999999999988878888888899999999885443 344455676663
No 189
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=47.95 E-value=18 Score=32.55 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=41.6
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc-CCCCCCCCcccEEEE
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVH 134 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN-~q~t~~d~~adl~I~ 134 (240)
.+.+-|++|++-.|............|+++|+++|-|- ....++.+.+|+.+.
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~ 139 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLD 139 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEE
Confidence 34677999999999998888888888899999988774 445666677777764
No 190
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.41 E-value=17 Score=27.52 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=50.3
Q ss_pred cEEEcCCCCChhhHHHHHHHhccCCEEEEEc-CCCCccccccchhhhhcC--CCEEEEEcCCCCCC-----C--CcccEE
Q 026284 63 TVLDWEDALPPVEMNPAEENCRMADVVLCLG-TSLQITPACNLPLKSLRG--GGKIVIVNLQQTPK-----D--KKASLV 132 (240)
Q Consensus 63 ~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIG-TSL~V~Pa~~lp~~a~~~--g~~lViIN~q~t~~-----d--~~adl~ 132 (240)
++.++|-..+.+.+.+.... .+.|++.+-. ++-+...+.++....++. +.+++.=....|.. . ..+|..
T Consensus 30 ~v~~~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~v 108 (121)
T PF02310_consen 30 EVDILDANVPPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYV 108 (121)
T ss_dssp EEEEEESSB-HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEE
T ss_pred eEEEECCCCCHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCccee
Confidence 56666666655444443322 2788877755 555666666666655444 66777777776532 1 356889
Q ss_pred EECcHHHHHHHHH
Q 026284 133 VHAPVDKVIAGVM 145 (240)
Q Consensus 133 I~g~~devl~~L~ 145 (240)
+.|..++.+.+|+
T Consensus 109 v~GegE~~~~~l~ 121 (121)
T PF02310_consen 109 VRGEGEEAFPELL 121 (121)
T ss_dssp EEETTSSHHHH--
T ss_pred cCCChHHhhcccC
Confidence 9999998887763
No 191
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.31 E-value=13 Score=39.53 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=33.0
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhccCC
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMAD 87 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~~aD 87 (240)
...+|++|+..|.. .+..-+|+ +|||.+-++|- +.-=+.-++.|.+.+++.+
T Consensus 1036 Q~fRC~kC~~kYRR--------------~PL~G~C~--kCGg~lilTVh---~GsV~KYl~~s~~la~~Y~ 1087 (1121)
T PRK04023 1036 QEFRCTKCGAKYRR--------------PPLSGKCP--KCGGNLILTVH---KGSVEKYLEVSKKLAEEYG 1087 (1121)
T ss_pred cceeecccCccccc--------------CCCCCcCc--cCCCeEEEEEe---cchHHHHHHHHHHHHHHcC
Confidence 35899999987663 12345799 89999998883 1111223555555555543
No 192
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=46.52 E-value=13 Score=23.12 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=22.0
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 60 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~L 60 (240)
...|.+|+..|.+++-. +..+...-+|+ +|+...
T Consensus 2 ~i~Cp~C~~~y~i~d~~-------ip~~g~~v~C~--~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK-------IPPKGRKVRCS--KCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH-------CCCCCcEEECC--CCCCEe
Confidence 36799999998875421 12233446799 898653
No 193
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=46.16 E-value=12 Score=21.14 Aligned_cols=10 Identities=0% Similarity=-0.439 Sum_probs=6.5
Q ss_pred eecCCCcccc
Q 026284 20 TAILFEKFAH 29 (240)
Q Consensus 20 ~C~~C~~~~~ 29 (240)
.|.+||...+
T Consensus 1 ~Cp~CG~~~~ 10 (23)
T PF13240_consen 1 YCPNCGAEIE 10 (23)
T ss_pred CCcccCCCCC
Confidence 3778886643
No 194
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=46.09 E-value=26 Score=31.88 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred hHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCC
Q 026284 75 EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 121 (240)
Q Consensus 75 ~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q 121 (240)
..+.+.+.++++|++||||..-. .-...|...|++.|.+.+.|.-.
T Consensus 199 RQ~a~~~La~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~ 244 (281)
T PF02401_consen 199 RQEAARELAKEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETA 244 (281)
T ss_dssp HHHHHHHHHCCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSG
T ss_pred HHHHHHHHHhhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCc
Confidence 45567778889999999998755 66777777888888888888543
No 195
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=45.99 E-value=11 Score=24.79 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=18.4
Q ss_pred ceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 19 CTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 19 ~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
..|..||..++.. ....-+|+ .||..
T Consensus 3 Y~C~~Cg~~~~~~-------------~~~~irC~--~CG~r 28 (44)
T smart00659 3 YICGECGRENEIK-------------SKDVVRCR--ECGYR 28 (44)
T ss_pred EECCCCCCEeecC-------------CCCceECC--CCCce
Confidence 5799999887643 12456899 89963
No 196
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=45.93 E-value=9.9 Score=23.83 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=19.8
Q ss_pred ceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcc
Q 026284 19 CTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 60 (240)
Q Consensus 19 ~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~L 60 (240)
..|..||..|... |. .....-.|. .||+.|
T Consensus 2 r~C~~Cg~~Yh~~-----~~-----pP~~~~~Cd--~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIE-----FN-----PPKVEGVCD--NCGGEL 31 (36)
T ss_dssp EEETTTTEEEETT-----TB-------SSTTBCT--TTTEBE
T ss_pred cCcCCCCCccccc-----cC-----CCCCCCccC--CCCCee
Confidence 4699999998852 11 112456798 899865
No 197
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=45.63 E-value=15 Score=34.98 Aligned_cols=29 Identities=7% Similarity=-0.075 Sum_probs=19.6
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccc
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD 62 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP 62 (240)
+++.|..||++|+ .+ ...+|| .|+|.|..
T Consensus 1 ~~l~C~~Cg~~~~-~~--------------~~~~C~--~c~g~l~~ 29 (398)
T TIGR03844 1 YTLRCPGCGEVLP-DH--------------YTLSCP--LDCGLLRA 29 (398)
T ss_pred CEEEeCCCCCccC-Cc--------------cccCCC--CCCCceEE
Confidence 3578999998876 22 125688 78876553
No 198
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=45.33 E-value=14 Score=40.15 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=36.5
Q ss_pred Eeccccc-----ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhc
Q 026284 10 EYQGRNL-----LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 84 (240)
Q Consensus 10 ElHG~sl-----~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~ 84 (240)
.|-| |+ ...+|++|+..|.. .+..-+|+ +|||.+-++|- .-++ +.-++.|.+.++
T Consensus 1241 Dl~G-NLraFsrQ~~RC~kC~~kyRR--------------~PL~G~C~--kCGg~iilTv~--~Gsv-~KYl~~a~~~~~ 1300 (1337)
T PRK14714 1241 DLIG-NLRAFSRQEFRCLKCGTKYRR--------------MPLAGKCR--KCGGRIILTVH--EGSV-EKYLDTAKMVAT 1300 (1337)
T ss_pred hhhh-hhhhhhccceeecccCccccc--------------CCCCCccc--ccCCeEEEEEe--cchH-HHHHHHHHHHHH
Confidence 3447 66 35899999987653 12345799 89999988883 1122 223556666655
Q ss_pred cCC
Q 026284 85 MAD 87 (240)
Q Consensus 85 ~aD 87 (240)
+.+
T Consensus 1301 ~y~ 1303 (1337)
T PRK14714 1301 EYN 1303 (1337)
T ss_pred HcC
Confidence 543
No 199
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=44.82 E-value=29 Score=37.12 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=38.9
Q ss_pred HhccCCEEEEEcCCCCcc--cccc---chhhhhcCC-CEEEEEcCCCCCCC----CcccEEEEC--cHHHHH
Q 026284 82 NCRMADVVLCLGTSLQIT--PACN---LPLKSLRGG-GKIVIVNLQQTPKD----KKASLVVHA--PVDKVI 141 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~--Pa~~---lp~~a~~~g-~~lViIN~q~t~~d----~~adl~I~g--~~devl 141 (240)
.+..||++|++||+.... |..+ ....++++| +++|.|++--|... ..+|.+|.= ..|-+|
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wlpIrPGTD~AL 353 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWLPIRPGTDSAL 353 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEeCCCCCcHHHH
Confidence 457899999999987653 3221 123455565 79999999987732 456776653 344444
No 200
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=44.54 E-value=33 Score=24.02 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=30.8
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 119 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN 119 (240)
.....+-|++|++-.|..-.-...+...++++|++++.|-
T Consensus 42 ~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 42 LSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3556788999999888775556666777888999988763
No 201
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.23 E-value=29 Score=25.87 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=28.4
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 119 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN 119 (240)
.....+.+||++|++=.-..-.-....-..|++.|.|++..+
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 467788999999987554442223333345678898988886
No 202
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=44.08 E-value=31 Score=27.40 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred hccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE
Q 026284 83 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV 118 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI 118 (240)
.+.-|++|++-+|..-...-.....|+++|.++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 677899999999998766666777889999998865
No 203
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=44.00 E-value=40 Score=30.76 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=40.7
Q ss_pred hccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECc
Q 026284 83 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~ 136 (240)
+.+-|++|.+-.|............+++.|+++|.| |...++..+.+|+.|.-.
T Consensus 129 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~ 183 (299)
T PRK05441 129 LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVV 183 (299)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcC
Confidence 567899999999998777777778889999987665 444556666677766543
No 204
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=43.97 E-value=29 Score=32.58 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=29.5
Q ss_pred HHHHhccCCEEEEEcCCCCccc-cccc-hhhhh-cCCCEEEEEcCCC
Q 026284 79 AEENCRMADVVLCLGTSLQITP-ACNL-PLKSL-RGGGKIVIVNLQQ 122 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~P-a~~l-p~~a~-~~g~~lViIN~q~ 122 (240)
..+.+++||++|+||+-+...- .-.. ..++. ++|++++.|++..
T Consensus 142 sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 142 SLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4556789999999999766432 2111 12233 5578999998876
No 205
>PRK06450 threonine synthase; Validated
Probab=43.49 E-value=16 Score=33.83 Aligned_cols=12 Identities=8% Similarity=-0.122 Sum_probs=9.2
Q ss_pred cceecCCCcccc
Q 026284 18 SCTAILFEKFAH 29 (240)
Q Consensus 18 ~~~C~~C~~~~~ 29 (240)
.++|..||+.|+
T Consensus 3 ~~~C~~Cg~~~~ 14 (338)
T PRK06450 3 KEVCMKCGKERE 14 (338)
T ss_pred eeEECCcCCcCC
Confidence 368999998765
No 206
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=43.42 E-value=15 Score=38.27 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=27.3
Q ss_pred HHhccCCEEEEEcCCCCc-cccc-cchhhhhcCCCEEEEEcCC
Q 026284 81 ENCRMADVVLCLGTSLQI-TPAC-NLPLKSLRGGGKIVIVNLQ 121 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V-~Pa~-~lp~~a~~~g~~lViIN~q 121 (240)
..+.+||++|++|+-+.. .|.. .....+.++|++++.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 345679999999998754 3322 2224566788887777764
No 207
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=42.76 E-value=20 Score=37.09 Aligned_cols=52 Identities=4% Similarity=-0.060 Sum_probs=33.6
Q ss_pred hccCCEEEEEcCCCCcc----------ccccchhhhh---cC-CCEEEEEcCCCCCCCCc-ccEEEE
Q 026284 83 CRMADVVLCLGTSLQIT----------PACNLPLKSL---RG-GGKIVIVNLQQTPKDKK-ASLVVH 134 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~----------Pa~~lp~~a~---~~-g~~lViIN~q~t~~d~~-adl~I~ 134 (240)
+.+||++|+.|+-..+. |.......++ ++ |+++|.|++..|..-.. +|.+|.
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~l~ 274 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEHLY 274 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeEec
Confidence 57899999999986432 3222222222 23 48999999998885543 455544
No 208
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=42.65 E-value=63 Score=24.36 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=41.4
Q ss_pred cccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCC--CCCCCCcccEEEECcHH
Q 026284 61 KDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ--QTPKDKKASLVVHAPVD 138 (240)
Q Consensus 61 RP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q--~t~~d~~adl~I~g~~d 138 (240)
+++|.+.|.. + +..+.+..||++|..-..-. ....-...+...|.+++.-+.. ...........+.++.+
T Consensus 52 ~~~v~~~g~~--~----e~~~~l~~~dv~l~p~~~~~--~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFV--E----ELPEILAAADVGLIPSRFNE--GFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPE 123 (135)
T ss_dssp HCTEEEE-S---H----HHHHHHHC-SEEEE-BSS-S--CC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HH
T ss_pred CCCEEEcCCH--H----HHHHHHHhCCEEEEEeeCCC--cCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHH
Confidence 6788888776 2 35667888999997542122 1111223456788888887762 11112234456677888
Q ss_pred HHHHHHHHHh
Q 026284 139 KVIAGVMRHL 148 (240)
Q Consensus 139 evl~~L~~~L 148 (240)
++...|.+.+
T Consensus 124 ~l~~~i~~l~ 133 (135)
T PF13692_consen 124 ELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887776654
No 209
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=41.48 E-value=36 Score=31.00 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=33.5
Q ss_pred hHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCC
Q 026284 75 EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 121 (240)
Q Consensus 75 ~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q 121 (240)
..+.+.+.+.++|++||||..-. .-..+|...+.+.|.+...|.-.
T Consensus 198 RQ~a~~~la~~vD~miVVGg~nS-sNT~rL~ei~~~~~~~t~~Ie~~ 243 (280)
T TIGR00216 198 RQDAVKELAPEVDLMIVIGGKNS-SNTTRLYEIAEEHGPPSYLIETA 243 (280)
T ss_pred HHHHHHHHHhhCCEEEEECCCCC-chHHHHHHHHHHhCCCEEEECCh
Confidence 34566777788999999998643 55667777777778777777443
No 210
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=41.21 E-value=26 Score=26.50 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=49.0
Q ss_pred cEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhh-cC--CCEEEEEcCCCCCCC--CcccEEEECcH
Q 026284 63 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSL-RG--GGKIVIVNLQQTPKD--KKASLVVHAPV 137 (240)
Q Consensus 63 ~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~-~~--g~~lViIN~q~t~~d--~~adl~I~g~~ 137 (240)
.+++.|...+.+.+..+... .+.|++.+-.++.+-..........+ +. +.+++.--...|... ...|+.+.|..
T Consensus 29 ~v~~l~~~~~~~~~~~~i~~-~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t~~~~~~~~d~~~~Ge~ 107 (125)
T cd02065 29 EVIDLGVDVPPEEIVEAAKE-EDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPTADPEEPKVDAVVIGEG 107 (125)
T ss_pred EEEEcCCCCCHHHHHHHHHH-cCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCCccccccccceeeeCCe
Confidence 46777778787655544443 67887777555554444444433332 22 355555444444321 34788999988
Q ss_pred HHHHHHHHH
Q 026284 138 DKVIAGVMR 146 (240)
Q Consensus 138 devl~~L~~ 146 (240)
+..++++++
T Consensus 108 e~~~~~l~~ 116 (125)
T cd02065 108 EYAGPALLE 116 (125)
T ss_pred EEEccccch
Confidence 888877765
No 211
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=41.05 E-value=44 Score=29.69 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=40.5
Q ss_pred hccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEE
Q 026284 83 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVH 134 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~ 134 (240)
+.+-|++|.+-.|............++++|+++|.| |....+..+.+|+.|.
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~ 168 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIA 168 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEE
Confidence 467899999999999888888888899999998766 5455565556666665
No 212
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=40.76 E-value=11 Score=33.39 Aligned_cols=17 Identities=6% Similarity=0.323 Sum_probs=14.0
Q ss_pred CcccccEEEcCCCCChh
Q 026284 58 SRLKDTVLDWEDALPPV 74 (240)
Q Consensus 58 G~LRP~IV~FGE~lp~~ 74 (240)
|.+||.|++||+++-+.
T Consensus 3 g~~rp~i~LFGdSItq~ 19 (245)
T KOG3035|consen 3 GPMRPRIVLFGDSITQF 19 (245)
T ss_pred CcccccEEEecchhhhh
Confidence 34899999999998653
No 213
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=40.45 E-value=1.4e+02 Score=27.93 Aligned_cols=85 Identities=14% Similarity=0.036 Sum_probs=47.3
Q ss_pred ccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEEECcHH
Q 026284 62 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVHAPVD 138 (240)
Q Consensus 62 P~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I~g~~d 138 (240)
.++++|+..+|.+ ...+.+..||++++.-.|..-.....-...|...|.++|.-|....+ .+....+.+ ++.+
T Consensus 294 ~~~~~~~g~~~~~---~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv-~d~~ 369 (415)
T cd03816 294 KKVTIRTPWLSAE---DYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVF-GDSE 369 (415)
T ss_pred CcEEEEcCcCCHH---HHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEE-CCHH
Confidence 3677776666543 34567788999875322211011111123566789999887764322 233345555 6777
Q ss_pred HHHHHHHHHhcc
Q 026284 139 KVIAGVMRHLNL 150 (240)
Q Consensus 139 evl~~L~~~Lg~ 150 (240)
++...|.+.+.-
T Consensus 370 ~la~~i~~ll~~ 381 (415)
T cd03816 370 ELAEQLIDLLSN 381 (415)
T ss_pred HHHHHHHHHHhc
Confidence 776666665543
No 214
>PLN02275 transferase, transferring glycosyl groups
Probab=39.61 E-value=1.4e+02 Score=27.39 Aligned_cols=80 Identities=16% Similarity=-0.004 Sum_probs=43.4
Q ss_pred ccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEEECcHH
Q 026284 62 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVHAPVD 138 (240)
Q Consensus 62 P~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I~g~~d 138 (240)
.++++|+-.+|.+ ...+.+..||++++.=+|..=.....-...|...|.|+|..|....+ .+....+.+. +.+
T Consensus 286 ~~v~~~~~~~~~~---~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~-~~~ 361 (371)
T PLN02275 286 RHVAFRTMWLEAE---DYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS-SSS 361 (371)
T ss_pred CceEEEcCCCCHH---HHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC-CHH
Confidence 3477776666643 44567889999975322211011111223566789999988765433 1334455554 555
Q ss_pred HHHHHHH
Q 026284 139 KVIAGVM 145 (240)
Q Consensus 139 evl~~L~ 145 (240)
+....|.
T Consensus 362 ~la~~i~ 368 (371)
T PLN02275 362 ELADQLL 368 (371)
T ss_pred HHHHHHH
Confidence 4444443
No 215
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=39.22 E-value=1.9e+02 Score=25.98 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=42.9
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEEECcHHHHHHHHHHHhc
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
.+.++.||+++. +|.. .+....+..|...|.++|..+..... .+....+.+.++.+++...+.+.+.
T Consensus 294 ~~~l~~ad~~l~--~s~~-E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~ 363 (392)
T cd03805 294 ELLLSSARALLY--TPSN-EHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAN 363 (392)
T ss_pred HHHHhhCeEEEE--CCCc-CCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHh
Confidence 456778998876 3332 44444456778899999988765432 2334566777777777766665544
No 216
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=39.17 E-value=21 Score=27.96 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=20.9
Q ss_pred cceecCCCcc-cchHHHHhhhhhhhccCcCCCCCCCCCCCCCccccc
Q 026284 18 SCTAILFEKF-AHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 63 (240)
Q Consensus 18 ~~~C~~C~~~-~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~ 63 (240)
+-.|.+||.+ |++ ++....|| .||....|.
T Consensus 9 KR~Cp~CG~kFYDL--------------nk~PivCP--~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDL--------------NKDPIVCP--KCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccC--------------CCCCccCC--CCCCccCcc
Confidence 4569999976 332 23445699 999877776
No 217
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=39.13 E-value=33 Score=31.58 Aligned_cols=54 Identities=7% Similarity=-0.038 Sum_probs=39.7
Q ss_pred hccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEECc
Q 026284 83 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHAP 136 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g~ 136 (240)
+.+-|++|++--|+...-.......++++|+++|-| |....+..+.+|+.|.-.
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ 144 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQ 144 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeC
Confidence 456789999966666666666666788888887766 777778878888776544
No 218
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=38.78 E-value=54 Score=28.91 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV 118 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI 118 (240)
...++.-|+++||-||..=.-.-.+...++..|+++|.+
T Consensus 99 ~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~v 137 (243)
T COG4821 99 RLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAV 137 (243)
T ss_pred HhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEE
Confidence 345567899999999987433445556778899999887
No 219
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=38.65 E-value=11 Score=29.45 Aligned_cols=13 Identities=0% Similarity=-0.094 Sum_probs=10.6
Q ss_pred cceecCCCcccch
Q 026284 18 SCTAILFEKFAHL 30 (240)
Q Consensus 18 ~~~C~~C~~~~~~ 30 (240)
..+|..||..+..
T Consensus 70 ~~~C~~Cg~~~~~ 82 (113)
T PRK12380 70 QAWCWDCSQVVEI 82 (113)
T ss_pred EEEcccCCCEEec
Confidence 6889999987664
No 220
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=38.41 E-value=1.9e+02 Score=24.95 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=48.3
Q ss_pred ccccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--CCCcccEEEE-Cc
Q 026284 60 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVH-AP 136 (240)
Q Consensus 60 LRP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~d~~adl~I~-g~ 136 (240)
+.++|.+.|..++.+ ...+.++.||+++.-...-. .........|...|.++|.-+..... .+....+.+. ++
T Consensus 245 ~~~~v~~~~~~~~~~---~~~~~~~~ad~~v~ps~~e~-~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d 320 (366)
T cd03822 245 LADRVIFINRYLPDE---ELPELFSAADVVVLPYRSAD-QTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGD 320 (366)
T ss_pred CCCcEEEecCcCCHH---HHHHHHhhcCEEEecccccc-cccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCC
Confidence 456787777767754 44567788999875322211 13333344567789998887654411 1222334443 45
Q ss_pred HHHHHHHHHHHh
Q 026284 137 VDKVIAGVMRHL 148 (240)
Q Consensus 137 ~devl~~L~~~L 148 (240)
.+++...|.+.+
T Consensus 321 ~~~~~~~l~~l~ 332 (366)
T cd03822 321 PAALAEAIRRLL 332 (366)
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
No 221
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=38.04 E-value=54 Score=33.51 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=29.3
Q ss_pred HHHhccCCEEEEEcCCCCcc-cccc-chhhhhcCCC-EEEEEcCCCCC
Q 026284 80 EENCRMADVVLCLGTSLQIT-PACN-LPLKSLRGGG-KIVIVNLQQTP 124 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~-Pa~~-lp~~a~~~g~-~lViIN~q~t~ 124 (240)
.+.+++||++|++||-.... |.-. -...+.++|+ +++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 34568899999999987432 2111 1123455664 99999988554
No 222
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=37.99 E-value=37 Score=30.91 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=40.0
Q ss_pred hccCCEEEEEcCCCCccccccchhhhhcCCCEEEEE-cCCCCCCCCcccEEEEC
Q 026284 83 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIV-NLQQTPKDKKASLVVHA 135 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI-N~q~t~~d~~adl~I~g 135 (240)
+.+-|++|++-.|............++++|+++|.| |....+..+.+|+.|.-
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 566799999999999777777778889999988877 33344555566776653
No 223
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=37.68 E-value=12 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=18.3
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
..+|..|++.++..++ .-.|| .||+.
T Consensus 70 ~~~C~~Cg~~~~~~~~--------------~~~CP--~Cgs~ 95 (115)
T TIGR00100 70 ECECEDCSEEVSPEID--------------LYRCP--KCHGI 95 (115)
T ss_pred EEEcccCCCEEecCCc--------------CccCc--CCcCC
Confidence 6889999987765321 23599 89964
No 224
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=37.50 E-value=86 Score=25.73 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.2
Q ss_pred CCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcC
Q 026284 69 DALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL 120 (240)
Q Consensus 69 E~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~ 120 (240)
+.++++.++++.+.+.+|.-+.++|....-..+..+...-.+-|.++..++.
T Consensus 16 ~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~ 67 (179)
T cd05005 16 DKIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGE 67 (179)
T ss_pred HhcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCC
Confidence 3567778999999999999899988876644444444333455767776653
No 225
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.46 E-value=22 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=20.7
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCC
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 122 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~ 122 (240)
.+|||+||.|+|+-=-| .-+|.++.++..+.
T Consensus 39 ~dAeLviV~G~sipnd~--------~l~GKkv~i~d~~~ 69 (103)
T COG3925 39 NDAELVIVFGSSIPNDS--------ALNGKKVWIGDIER 69 (103)
T ss_pred CcccEEEEeccccCCCc--------cccCceEEEecHHH
Confidence 46899999999974222 12566777765543
No 226
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=37.42 E-value=1.3e+02 Score=28.82 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=52.6
Q ss_pred hHHHHHHHhccCCEEEEEcCCC--Cccccccchh--hhhcCCCEEEEEcCCCCCCCC------------cccE-EEECcH
Q 026284 75 EMNPAEENCRMADVVLCLGTSL--QITPACNLPL--KSLRGGGKIVIVNLQQTPKDK------------KASL-VVHAPV 137 (240)
Q Consensus 75 ~l~~a~~~~~~aDLvLVIGTSL--~V~Pa~~lp~--~a~~~g~~lViIN~q~t~~d~------------~adl-~I~g~~ 137 (240)
.+....+++++||++|..|-|+ .+|+..++.. .|+..|.|++++...--|+.+ .+++ .++
T Consensus 107 ~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvR--- 183 (426)
T PRK10017 107 GFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQDEQFNQLANYVFGHCDALILR--- 183 (426)
T ss_pred hHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEc---
Confidence 4556678899999999999887 3456554442 456678899998777666543 2333 344
Q ss_pred HHHHHHHHHHhcccCCC
Q 026284 138 DKVIAGVMRHLNLWIPP 154 (240)
Q Consensus 138 devl~~L~~~Lg~~iP~ 154 (240)
|+.-.++++.||.+-|+
T Consensus 184 D~~S~~~Lk~lGv~~~~ 200 (426)
T PRK10017 184 ESVSLDLMKRSNITTAK 200 (426)
T ss_pred cHHHHHHHHHhCCCccc
Confidence 45556788999987654
No 227
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=37.24 E-value=16 Score=28.70 Aligned_cols=27 Identities=22% Similarity=0.620 Sum_probs=17.8
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
..+|..||..++..+ ...-.|| .||+.
T Consensus 70 ~~~C~~Cg~~~~~~~-------------~~~~~CP--~Cgs~ 96 (114)
T PRK03681 70 ECWCETCQQYVTLLT-------------QRVRRCP--QCHGD 96 (114)
T ss_pred EEEcccCCCeeecCC-------------ccCCcCc--CcCCC
Confidence 688999997665421 1124599 89964
No 228
>PLN02569 threonine synthase
Probab=37.21 E-value=19 Score=35.26 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=14.8
Q ss_pred ecccccccceecCCCcccchH
Q 026284 11 YQGRNLLSCTAILFEKFAHLV 31 (240)
Q Consensus 11 lHG~sl~~~~C~~C~~~~~~~ 31 (240)
+-|+.+..++|..||++|+.+
T Consensus 42 ~~~~~~~~l~C~~Cg~~y~~~ 62 (484)
T PLN02569 42 FSAKYVPFLECPLTGEKYSLD 62 (484)
T ss_pred cccccccccEeCCCCCcCCCc
Confidence 334344568999999988754
No 229
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.91 E-value=1.6e+02 Score=24.70 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=34.2
Q ss_pred CCCCChhhHHHHHHHh-ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCC
Q 026284 68 EDALPPVEMNPAEENC-RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 121 (240)
Q Consensus 68 GE~lp~~~l~~a~~~~-~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q 121 (240)
.+.-++...+.+.+.+ +.+|.+|+..++-. ....+...+...|.|+|.+|..
T Consensus 37 ~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~--~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 37 AQNDPEEQIEQIEQAISQGVDGIIVSPVDPD--SLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp STTTHHHHHHHHHHHHHTTESEEEEESSSTT--TTHHHHHHHHHTTSEEEEESST
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEecCCCHH--HHHHHHHHHhhcCceEEEEecc
Confidence 3333444455555554 45899988766542 2334556678899999999998
No 230
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=36.17 E-value=2.3e+02 Score=23.29 Aligned_cols=48 Identities=17% Similarity=0.037 Sum_probs=30.3
Q ss_pred ChhhHHHHHHHhc-cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC
Q 026284 72 PPVEMNPAEENCR-MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 123 (240)
Q Consensus 72 p~~~l~~a~~~~~-~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t 123 (240)
++...+.+.+... ++|.+|+.+++..... ...+.+.|.++|.++....
T Consensus 41 ~~~~~~~~~~~~~~~~d~iii~~~~~~~~~----~~~~~~~~ipvv~~~~~~~ 89 (264)
T cd06267 41 PEKEREALELLLSRRVDGIILAPSRLDDEL----LEELAALGIPVVLVDRPLD 89 (264)
T ss_pred HHHHHHHHHHHHHcCcCEEEEecCCcchHH----HHHHHHcCCCEEEeccccc
Confidence 3333444444443 6899999888754322 3345678899999987643
No 231
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=35.95 E-value=22 Score=33.85 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.2
Q ss_pred HHhccCCEEEEEcCCCCc
Q 026284 81 ENCRMADVVLCLGTSLQI 98 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V 98 (240)
..+.+||++|++|+-+..
T Consensus 141 ~di~~ad~il~~G~n~~~ 158 (472)
T cd02771 141 RDIESADAVLVLGEDLTQ 158 (472)
T ss_pred HHHHhCCEEEEEeCCccc
Confidence 356789999999997653
No 232
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=35.84 E-value=77 Score=26.52 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHHh---ccCCEEEEEcCCCCccccccchhhhhc--CCCEEEEEcCCCCCCCCcccEEEE-CcHHHHHHHHH
Q 026284 78 PAEENC---RMADVVLCLGTSLQITPACNLPLKSLR--GGGKIVIVNLQQTPKDKKASLVVH-APVDKVIAGVM 145 (240)
Q Consensus 78 ~a~~~~---~~aDLvLVIGTSL~V~Pa~~lp~~a~~--~g~~lViIN~q~t~~d~~adl~I~-g~~devl~~L~ 145 (240)
.+.+.+ .++||+|.+|+.. |-+..+.. +.+ ...+.|-++ +.. ...||+.+- -.-++.+..|-
T Consensus 90 p~~e~~~g~g~~DlvlfvG~~~--y~~~~~ls-~lk~f~~~~~i~l~--~~y-~pnA~~Sf~n~~~~~~~~~l~ 157 (162)
T TIGR00315 90 PSWEGFDGEGNYDLVLFLGIIY--YYLSQMLS-SLKHFSHIVTIAID--KYY-QPNADYSFPNLSKDEYLDYLR 157 (162)
T ss_pred chhhhccCCCCcCEEEEeCCcc--hHHHHHHH-HHHhhcCcEEEEec--CCC-CCCCceeccccCHHHHHHHHH
Confidence 345566 7899999999986 33333332 322 244555554 333 445666641 12445554443
No 233
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=35.74 E-value=99 Score=30.49 Aligned_cols=77 Identities=8% Similarity=0.150 Sum_probs=54.5
Q ss_pred cEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC--CCcccEEEECcHHHH
Q 026284 63 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKV 140 (240)
Q Consensus 63 ~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~--d~~adl~I~g~~dev 140 (240)
+.|.|....++..+. +..+.|.|+|-++++-..+ ....|..+|.|.| |..++.+ +....+.| |+.+++
T Consensus 409 ~~v~f~gy~~e~dl~---~~~~~arl~id~s~~eg~~----~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li-~d~~~l 478 (519)
T TIGR03713 409 ERIAFTTLTNEEDLI---SALDKLRLIIDLSKEPDLY----TQISGISAGIPQI--NKVETDYVEHNKNGYII-DDISEL 478 (519)
T ss_pred cEEEEEecCCHHHHH---HHHhhheEEEECCCCCChH----HHHHHHHcCCCee--ecCCceeeEcCCCcEEe-CCHHHH
Confidence 578887777765444 5677888988888764432 3335678898887 8777753 55566655 999998
Q ss_pred HHHHHHHhc
Q 026284 141 IAGVMRHLN 149 (240)
Q Consensus 141 l~~L~~~Lg 149 (240)
-..|...|.
T Consensus 479 ~~al~~~L~ 487 (519)
T TIGR03713 479 LKALDYYLD 487 (519)
T ss_pred HHHHHHHHh
Confidence 888877764
No 234
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.65 E-value=26 Score=28.32 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=20.7
Q ss_pred cceecCCCcc-cchHHHHhhhhhhhccCcCCCCCCCCCCCCCccccc
Q 026284 18 SCTAILFEKF-AHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDT 63 (240)
Q Consensus 18 ~~~C~~C~~~-~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~ 63 (240)
+-.|.+||++ |++ .+....|| .||....+.
T Consensus 9 Kr~Cp~cg~kFYDL--------------nk~p~vcP--~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDL--------------NRRPAVSP--YTGEQFPPE 39 (129)
T ss_pred cccCCCcCcccccc--------------CCCCccCC--CcCCccCcc
Confidence 4569999976 332 24567899 999765554
No 235
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=35.61 E-value=49 Score=22.27 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=28.4
Q ss_pred CCCeEEecccccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcc
Q 026284 5 CICVLEYQGRNLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRL 60 (240)
Q Consensus 5 ~~kViElHG~sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~L 60 (240)
..-|..+.| -.|..|+-..+...+.+-. .......|| .||-.|
T Consensus 14 g~~va~v~~-----~~C~gC~~~l~~~~~~~i~------~~~~i~~Cp--~CgRiL 56 (56)
T PF02591_consen 14 GVAVARVEG-----GTCSGCHMELPPQELNEIR------KGDEIVFCP--NCGRIL 56 (56)
T ss_pred CcEEEEeeC-----CccCCCCEEcCHHHHHHHH------cCCCeEECc--CCCccC
Confidence 344667777 3799999887766554321 124678899 898654
No 236
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=35.18 E-value=29 Score=21.22 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=15.5
Q ss_pred eecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 20 TAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 20 ~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
.|..||...++. ....-+|+ .||..
T Consensus 2 ~C~~Cg~~~~~~-------------~~~~irC~--~CG~R 26 (32)
T PF03604_consen 2 ICGECGAEVELK-------------PGDPIRCP--ECGHR 26 (32)
T ss_dssp BESSSSSSE-BS-------------TSSTSSBS--SSS-S
T ss_pred CCCcCCCeeEcC-------------CCCcEECC--cCCCe
Confidence 588999876632 12345899 89864
No 237
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.66 E-value=26 Score=21.19 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=16.7
Q ss_pred ceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC
Q 026284 19 CTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS 58 (240)
Q Consensus 19 ~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG 58 (240)
.+|..||..++..+ ..-.|| .||.
T Consensus 2 ~~C~~CGy~y~~~~--------------~~~~CP--~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE--------------APWVCP--VCGA 25 (33)
T ss_pred EECCCCCCEECCCc--------------CCCcCc--CCCC
Confidence 47999998876321 345799 8985
No 238
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=34.43 E-value=2.1e+02 Score=24.08 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEEECc-HHHHHHHHHHHh
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVHAP-VDKVIAGVMRHL 148 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I~g~-~devl~~L~~~L 148 (240)
...+.+..||++|....+ .....-...|...|.++|.-+..... .+....+.+... .+++...|.+.+
T Consensus 268 ~~~~~~~~~di~i~~~~~---~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 339 (374)
T cd03801 268 DLPALYAAADVFVLPSLY---EGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLL 339 (374)
T ss_pred hHHHHHHhcCEEEecchh---ccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHH
Confidence 455677789998876554 33333345677789998887764332 112334444443 566666555543
No 239
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=34.12 E-value=50 Score=30.12 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcC
Q 026284 76 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNL 120 (240)
Q Consensus 76 l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~ 120 (240)
.+.+.+.++++|++||||..-. .-..+|...|.+.|.+...|.-
T Consensus 200 Q~a~~~La~~vD~miVVGg~~S-sNT~rL~eia~~~~~~t~~Ie~ 243 (281)
T PRK12360 200 QESAKELSKEVDVMIVIGGKHS-SNTQKLVKICEKNCPNTFHIET 243 (281)
T ss_pred HHHHHHHHHhCCEEEEecCCCC-ccHHHHHHHHHHHCCCEEEECC
Confidence 4456667778999999998643 4566677777777766766643
No 240
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=34.07 E-value=26 Score=21.80 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=21.3
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSR 59 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~ 59 (240)
...|.+|+..|.+.+-. ++.....-+|+ +|+..
T Consensus 2 ~i~CP~C~~~f~v~~~~-------l~~~~~~vrC~--~C~~~ 34 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK-------LPAGGRKVRCP--KCGHV 34 (37)
T ss_pred EEECCCCCceEEcCHHH-------cccCCcEEECC--CCCcE
Confidence 36799999988865421 12233456799 89864
No 241
>PRK08197 threonine synthase; Validated
Probab=34.06 E-value=21 Score=33.64 Aligned_cols=16 Identities=0% Similarity=-0.288 Sum_probs=12.0
Q ss_pred cccceecCCCcccchH
Q 026284 16 LLSCTAILFEKFAHLV 31 (240)
Q Consensus 16 l~~~~C~~C~~~~~~~ 31 (240)
+...+|..||++|+.+
T Consensus 5 ~~~~~C~~Cg~~~~~~ 20 (394)
T PRK08197 5 VSHLECSKCGETYDAD 20 (394)
T ss_pred eeEEEECCCCCCCCCC
Confidence 3458899999887753
No 242
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=33.80 E-value=56 Score=30.04 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=44.7
Q ss_pred hHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC-C---CCCcccEEEECc---HHHHHHHHHHH
Q 026284 75 EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-P---KDKKASLVVHAP---VDKVIAGVMRH 147 (240)
Q Consensus 75 ~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t-~---~d~~adl~I~g~---~devl~~L~~~ 147 (240)
..+.+.+.++++|++||||..-. .-...|...+++.|.+...|.-..- . +.....+-|-+. .+.++.++...
T Consensus 200 RQ~a~~~La~~vD~miVVGg~~S-sNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~ 278 (298)
T PRK01045 200 RQEAVKELAPQADLVIVVGSKNS-SNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIAR 278 (298)
T ss_pred HHHHHHHHHhhCCEEEEECCCCC-ccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHH
Confidence 44566777889999999998643 4566777777777777777743321 1 222223444432 34566666665
Q ss_pred hc
Q 026284 148 LN 149 (240)
Q Consensus 148 Lg 149 (240)
|.
T Consensus 279 l~ 280 (298)
T PRK01045 279 LK 280 (298)
T ss_pred HH
Confidence 53
No 243
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=33.30 E-value=75 Score=28.96 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=39.3
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc-CCCCCCCCcccEEEE
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTPKDKKASLVVH 134 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN-~q~t~~d~~adl~I~ 134 (240)
.+-|++|++-+|....-.......+++.|+++|-|. ....+..+.+|+.|.
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~ 177 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAIS 177 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence 567999999999997777777778889999987774 444566666777765
No 244
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=33.22 E-value=79 Score=27.20 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCC------------CCcccEEEECcHHHHHHHHHH
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK------------DKKASLVVHAPVDKVIAGVMR 146 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~------------d~~adl~I~g~~devl~~L~~ 146 (240)
..-.+.++-.+|.|||..- |.+..+.. +...+++++.|...+... +... -.+.|++.++|++|..
T Consensus 39 ~l~~~~~~k~vLEIGt~~G-ySal~la~-~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I-~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 39 MLVRLTRPKRVLEIGTFTG-YSALWLAE-ALPEDGKITTIEIDPERAEIARENFRKAGLDDRI-EVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHT-SEEEEESTTTS-HHHHHHHH-TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGE-EEEES-HHHHHHHHHH
T ss_pred HHHHhcCCceEEEeccccc-cHHHHHHH-hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcE-EEEEeccHhhHHHHHh
Confidence 3344568999999999877 66666653 334577898887766432 1222 3578999999998876
Q ss_pred Hh
Q 026284 147 HL 148 (240)
Q Consensus 147 ~L 148 (240)
.-
T Consensus 116 ~~ 117 (205)
T PF01596_consen 116 DG 117 (205)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 245
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=32.95 E-value=2.8e+02 Score=24.51 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=47.3
Q ss_pred cccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEEE-Cc
Q 026284 61 KDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVH-AP 136 (240)
Q Consensus 61 RP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I~-g~ 136 (240)
.++|.+.| .+|. ++..+.++.||++++- |. .+....+..|...|.++|..+..... .+....+.+. ++
T Consensus 241 ~~~V~~~g-~~~~---~~~~~~~~~ad~~v~p--s~--e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~ 312 (351)
T cd03804 241 GPNVTFLG-RVSD---EELRDLYARARAFLFP--AE--EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQT 312 (351)
T ss_pred CCCEEEec-CCCH---HHHHHHHHhCCEEEEC--Cc--CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCC
Confidence 35565554 3454 3456678889988763 33 33434445777889999988765433 1333455553 55
Q ss_pred HHHHHHHHHHHhc
Q 026284 137 VDKVIAGVMRHLN 149 (240)
Q Consensus 137 ~devl~~L~~~Lg 149 (240)
.+++...|...+.
T Consensus 313 ~~~la~~i~~l~~ 325 (351)
T cd03804 313 VESLAAAVERFEK 325 (351)
T ss_pred HHHHHHHHHHHHh
Confidence 6665555544443
No 246
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=32.66 E-value=1.8e+02 Score=25.97 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=36.3
Q ss_pred cEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCC
Q 026284 63 TVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 122 (240)
Q Consensus 63 ~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~ 122 (240)
+|++|+..++.+ ...+.+..||+++. +|.. .+.......|...|.++|.-|...
T Consensus 261 ~v~~~~~~~~~~---~~~~~~~~aDv~v~--ps~~-e~~g~~~lEA~a~G~PvI~s~~~~ 314 (388)
T TIGR02149 261 GIIWINKMLPKE---ELVELLSNAEVFVC--PSIY-EPLGIVNLEAMACGTPVVASATGG 314 (388)
T ss_pred ceEEecCCCCHH---HHHHHHHhCCEEEe--CCcc-CCCChHHHHHHHcCCCEEEeCCCC
Confidence 377778777764 34566788998876 3332 444444467788899998877654
No 247
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=32.08 E-value=62 Score=33.55 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=35.7
Q ss_pred hccCCEEEEEcCCCCc----------cccccchhhhh---cC-CCEEEEEcCCCCCCCCc-cc--EEEECcHHHHH
Q 026284 83 CRMADVVLCLGTSLQI----------TPACNLPLKSL---RG-GGKIVIVNLQQTPKDKK-AS--LVVHAPVDKVI 141 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V----------~Pa~~lp~~a~---~~-g~~lViIN~q~t~~d~~-ad--l~I~g~~devl 141 (240)
+.+||++|+.|+-... .|...+...++ ++ |+++|.|++..|..-.. ++ +.|+=..|-+|
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~a~~~~l~irPGTD~AL 286 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNYLGCEHLYVNPQTDVPL 286 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhhccCceecccCCcHHHH
Confidence 5789999999997643 22222222222 23 68999999998876443 22 33444444444
No 248
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=32.08 E-value=76 Score=31.86 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=44.2
Q ss_pred HHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEEC
Q 026284 80 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 135 (240)
Q Consensus 80 ~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g 135 (240)
...+.+-|++|++.-|....-...+...++++|+++|.|--...++-+.+|+.|.-
T Consensus 510 ~~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~ 565 (638)
T PRK14101 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALET 565 (638)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEc
Confidence 34567789999999999877777778888999999998866556666677777754
No 249
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit. This model represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. Homologs to both large and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7. This enzyme acts in energy metabolim by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export.
Probab=31.48 E-value=79 Score=32.90 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=31.7
Q ss_pred HHhccCCEEEEEcCCCCccccc----cc-hh-----hhhcC---------CCEEEEEcCCCCCCCCcc
Q 026284 81 ENCRMADVVLCLGTSLQITPAC----NL-PL-----KSLRG---------GGKIVIVNLQQTPKDKKA 129 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~----~l-p~-----~a~~~---------g~~lViIN~q~t~~d~~a 129 (240)
+.+..||++|++|+.....-.. .+ +. .++++ |+++|+|++..|..-..+
T Consensus 216 ~D~~~Ad~iv~~G~Np~et~~~~~~~~~~~~~~~~~~ak~~~~~~g~~~~~~kiIvIDPr~t~ta~~a 283 (806)
T TIGR02693 216 EDARLADTIVLWGANSYETQTNYFLNHWLPNLQGATVAKKKQAFPGEPAEPGYLIVVDPRRTSSYTVA 283 (806)
T ss_pred HHHHhCCEEEEECCChHHhhhhhhHhhhhhhhhHHHHhhhhhcccccccCCceEEEEcCCCCchhhhh
Confidence 4577999999999986543211 11 11 22332 579999999988754444
No 250
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=31.08 E-value=2e+02 Score=25.04 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=44.6
Q ss_pred cccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEEE-Cc
Q 026284 61 KDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVH-AP 136 (240)
Q Consensus 61 RP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I~-g~ 136 (240)
.++|.++|- .+...+.+..||++|.- |..-.....-...|...|.++|.-|..... .+....+.+. ++
T Consensus 245 ~~~v~~~g~------~~~~~~~l~~ad~~i~p--s~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~ 316 (355)
T cd03819 245 QDRVTFVGH------CSDMPAAYALADIVVSA--STEPEAFGRTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGD 316 (355)
T ss_pred cceEEEcCC------cccHHHHHHhCCEEEec--CCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCC
Confidence 345555554 12344677789987763 322233333345677889999887765443 1222334443 56
Q ss_pred HHHHHHHHHHHh
Q 026284 137 VDKVIAGVMRHL 148 (240)
Q Consensus 137 ~devl~~L~~~L 148 (240)
.+++...|...+
T Consensus 317 ~~~l~~~i~~~~ 328 (355)
T cd03819 317 AEALAQALDQIL 328 (355)
T ss_pred HHHHHHHHHHHH
Confidence 666666664444
No 251
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.01 E-value=45 Score=25.55 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.7
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 119 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN 119 (240)
.+.+-|++|++--|....-.......++++|+++|.|-
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 56677999999988887777777777888899888774
No 252
>PLN02929 NADH kinase
Probab=30.92 E-value=77 Score=29.20 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC
Q 026284 81 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP 124 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~ 124 (240)
+....+|++|++|--.++.-+++.. ..+.|++=||..++.
T Consensus 60 ~~~~~~Dlvi~lGGDGT~L~aa~~~----~~~iPvlGIN~Gp~~ 99 (301)
T PLN02929 60 QPIRDVDLVVAVGGDGTLLQASHFL----DDSIPVLGVNSDPTQ 99 (301)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHc----CCCCcEEEEECCCcc
Confidence 4557899999999999888777653 457899999998753
No 253
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.91 E-value=31 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.398 Sum_probs=16.8
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCC
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGS 58 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG 58 (240)
..+|..||..++.+ .....|| .||.
T Consensus 2 ~~~C~~CG~i~~g~--------------~~p~~CP--~Cg~ 26 (34)
T cd00729 2 VWVCPVCGYIHEGE--------------EAPEKCP--ICGA 26 (34)
T ss_pred eEECCCCCCEeECC--------------cCCCcCc--CCCC
Confidence 35799999876531 1234799 8985
No 254
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=30.88 E-value=2.6e+02 Score=25.23 Aligned_cols=70 Identities=10% Similarity=0.055 Sum_probs=41.7
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc-CCCCC---CCCcccEEE-ECcHHHHHHHHHHHhccc
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN-LQQTP---KDKKASLVV-HAPVDKVIAGVMRHLNLW 151 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN-~q~t~---~d~~adl~I-~g~~devl~~L~~~Lg~~ 151 (240)
..+..+.||+++. +|. ..+...-...|...|.++|.-| ..... .+....+.+ .++.+++...|.+.+..+
T Consensus 251 ~~~~~~~~d~~v~--~s~-~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 251 VQQKIKNVSALLL--TSK-FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred HHHHHhcCcEEEE--CCc-ccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 3445566787775 343 2444444456778899999888 33211 223333444 478888888877766553
No 255
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=30.80 E-value=27 Score=28.16 Aligned_cols=15 Identities=7% Similarity=-0.323 Sum_probs=12.1
Q ss_pred ccceecCCCcccchH
Q 026284 17 LSCTAILFEKFAHLV 31 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ 31 (240)
...+|..||+.++..
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 368899999988764
No 256
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.11 E-value=1.1e+02 Score=31.45 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=32.3
Q ss_pred HHhccCCEEEEEcCCCCcc-ccc---cc-hh----------hhhcCC-----CEEEEEcCCCCCCCCccc
Q 026284 81 ENCRMADVVLCLGTSLQIT-PAC---NL-PL----------KSLRGG-----GKIVIVNLQQTPKDKKAS 130 (240)
Q Consensus 81 ~~~~~aDLvLVIGTSL~V~-Pa~---~l-p~----------~a~~~g-----~~lViIN~q~t~~d~~ad 130 (240)
+.++.||++|++|+-.... |.. ++ +. .+.++| +++|+|++..|..-..+|
T Consensus 219 ~Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad 288 (676)
T cd02756 219 EDARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAE 288 (676)
T ss_pred HHHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhh
Confidence 4577899999999975433 221 11 10 011234 699999999998666665
No 257
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=29.80 E-value=1.2e+02 Score=24.80 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=35.7
Q ss_pred CCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEc
Q 026284 69 DALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN 119 (240)
Q Consensus 69 E~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN 119 (240)
+.++++.++++.+.+.++.-+.++|....-..+..+..+-.+-|.....+.
T Consensus 13 ~~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 63 (179)
T TIGR03127 13 SRIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVG 63 (179)
T ss_pred HhCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 346777899999999999999998887665555555444445566665553
No 258
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=29.66 E-value=66 Score=30.65 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=35.6
Q ss_pred ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccc-cEEEcCCCCChhhHHHHHHHhccCCEEEEEcCC
Q 026284 17 LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKD-TVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 95 (240)
Q Consensus 17 ~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP-~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTS 95 (240)
+..+|..|++.+.. ......+|| .||+.++= .-+|-|.-.+++.++++.+.+++. .+||-
T Consensus 239 ~~~~c~~cg~~~~~-------------~~~~~~~c~--~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~----~l~~~ 299 (380)
T COG1867 239 YIYHCSRCGEIVGS-------------FREVDEKCP--HCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL----ELGTK 299 (380)
T ss_pred cEEEcccccceecc-------------cccccccCC--cccccceeccCcccCcccCHHHHHHHHHHhhcc----ccccH
Confidence 45789999843221 123456799 89975443 335555555666666555555443 55664
Q ss_pred CC
Q 026284 96 LQ 97 (240)
Q Consensus 96 L~ 97 (240)
-+
T Consensus 300 ~~ 301 (380)
T COG1867 300 KR 301 (380)
T ss_pred HH
Confidence 33
No 259
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=29.51 E-value=62 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=30.9
Q ss_pred HHHHhccC---C-EEEEEcCCCCccccccchhhhhcCCCEEEEE
Q 026284 79 AEENCRMA---D-VVLCLGTSLQITPACNLPLKSLRGGGKIVIV 118 (240)
Q Consensus 79 a~~~~~~a---D-LvLVIGTSL~V~Pa~~lp~~a~~~g~~lViI 118 (240)
+.+.+++| | .+||+|+-+--.--+.|+.+|++.|.++=+|
T Consensus 66 sd~il~~ad~~dVa~LVVGdPfgATTHsDlvlRAk~~~ipv~vI 109 (272)
T KOG3123|consen 66 SDKILDEADKEDVAFLVVGDPFGATTHSDLVLRAKELGIPVEVI 109 (272)
T ss_pred HHHHhhhhhhcceEEEEecCcccccchhhhheehhhcCCCeEEE
Confidence 44444444 4 7899999999888899999999888877544
No 260
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=28.65 E-value=38 Score=37.35 Aligned_cols=57 Identities=23% Similarity=0.195 Sum_probs=35.5
Q ss_pred Eeccccc-----ccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCcccccEEEcCCCCChhhHHHHHHHhc
Q 026284 10 EYQGRNL-----LSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCR 84 (240)
Q Consensus 10 ElHG~sl-----~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LRP~IV~FGE~lp~~~l~~a~~~~~ 84 (240)
.|-| |+ ...+| +|+..|.. .+..-+|+ +|||.+-.+|- +.-=+.-+..|.+.++
T Consensus 1530 Dl~G-NLRaFsrQ~~RC-kC~~kyRR--------------~PL~G~C~--kCGg~~ilTV~---kGsv~KYl~~a~~~~~ 1588 (1627)
T PRK14715 1530 DLIG-NLRAFSRQEFRC-KCGAKYRR--------------VPLKGKCP--KCGSKLILTVS---KGAVEKYMPVAKMMAE 1588 (1627)
T ss_pred hhhh-hhhhhhccceee-cCCCcccc--------------CCCCCcCc--ccCCeEEEEEe---cchHHHHHHHHHHHHH
Confidence 3457 66 34789 99987653 12345799 99999988873 2212233556666665
Q ss_pred cCC
Q 026284 85 MAD 87 (240)
Q Consensus 85 ~aD 87 (240)
+.+
T Consensus 1589 ~y~ 1591 (1627)
T PRK14715 1589 KYN 1591 (1627)
T ss_pred HcC
Confidence 544
No 261
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=28.49 E-value=3.6e+02 Score=22.65 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=33.1
Q ss_pred hccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 026284 83 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 83 ~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~L 148 (240)
...+|-+|+.|+... + .....+.+.|.++|.+|....... .. .|..+-.+....++++|
T Consensus 53 ~~~vdgii~~~~~~~--~--~~~~~~~~~~ipvV~~~~~~~~~~--~~-~v~~d~~~~~~~~~~~l 111 (268)
T cd06270 53 ERRCDALILHSKALS--D--DELIELAAQVPPLVLINRHIPGLA--DR-CIWLDNEQGGYLATEHL 111 (268)
T ss_pred HcCCCEEEEecCCCC--H--HHHHHHhhCCCCEEEEeccCCCCC--CC-eEEECcHHHHHHHHHHH
Confidence 357999999986432 1 113345678889999987532111 11 23444444444444444
No 262
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.26 E-value=39 Score=26.82 Aligned_cols=13 Identities=0% Similarity=-0.342 Sum_probs=10.2
Q ss_pred cceecCCCcccchH
Q 026284 18 SCTAILFEKFAHLV 31 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ 31 (240)
..+| .||+.++..
T Consensus 70 ~~~C-~Cg~~~~~~ 82 (124)
T PRK00762 70 EIEC-ECGYEGVVD 82 (124)
T ss_pred eEEe-eCcCccccc
Confidence 6889 999876653
No 263
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=28.11 E-value=3.6e+02 Score=22.65 Aligned_cols=58 Identities=7% Similarity=-0.059 Sum_probs=33.5
Q ss_pred cEEEcCCCCChh-hHHHHHHHh-ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCC
Q 026284 63 TVLDWEDALPPV-EMNPAEENC-RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 122 (240)
Q Consensus 63 ~IV~FGE~lp~~-~l~~a~~~~-~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~ 122 (240)
+++++....... ..+...+.. .+.|-+|+.+++..... .....+.+.|.|+|.+|...
T Consensus 36 ~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~--~~l~~~~~~~iPvv~~~~~~ 95 (272)
T cd06300 36 EFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALN--PVIEEACEAGIPVVSFDGTV 95 (272)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH--HHHHHHHHCCCeEEEEecCC
Confidence 555554444433 233333333 47899999887643221 12234566789999999764
No 264
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=27.72 E-value=49 Score=28.18 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=22.3
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 61 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR 61 (240)
..+|..|+-.+.+++.+. ..-.|| .||+.|.
T Consensus 113 ~y~C~~~~~r~sfdeA~~-----------~~F~Cp--~Cg~~L~ 143 (176)
T COG1675 113 YYVCPNCHVKYSFDEAME-----------LGFTCP--KCGEDLE 143 (176)
T ss_pred ceeCCCCCCcccHHHHHH-----------hCCCCC--CCCchhh
Confidence 467888988888766442 235799 8998664
No 265
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=27.60 E-value=1.1e+02 Score=26.35 Aligned_cols=30 Identities=20% Similarity=-0.012 Sum_probs=18.7
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhh
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLK 107 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~ 107 (240)
.....+-....+|.||.|+.=.....+...
T Consensus 171 ~~l~~ll~~~~~LFiG~S~~D~~i~~ll~~ 200 (242)
T cd01406 171 KFLKSDLEKYTVLFIGYSLTDPNIRYLLER 200 (242)
T ss_pred HHHHHHHhcCcEEEEEcCCCCCcHHHHHHH
Confidence 333344446788999999885555555443
No 266
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=27.50 E-value=3.4e+02 Score=24.92 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEE--ECcHHHHHHHHHHHhc
Q 026284 78 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVV--HAPVDKVIAGVMRHLN 149 (240)
Q Consensus 78 ~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I--~g~~devl~~L~~~Lg 149 (240)
...+..+.||++++ +|..-.++......|...|.++|.-|....+ .+....+.+ .++.+++...|.+.|.
T Consensus 269 ~l~~~~~~aDv~v~--pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 269 KMHNYYPLADLVVV--PSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred HHHHHHHhCCEEEe--CCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34556778998876 4432245444456778899999988865433 133334434 4577777766666554
No 267
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=27.36 E-value=69 Score=27.17 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=24.4
Q ss_pred EEcCCCCChh--hHHHHHHHhccCC-EEEEEcCC
Q 026284 65 LDWEDALPPV--EMNPAEENCRMAD-VVLCLGTS 95 (240)
Q Consensus 65 V~FGE~lp~~--~l~~a~~~~~~aD-LvLVIGTS 95 (240)
++||--.|.+ .+.....+++++| |+|+||+.
T Consensus 7 v~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa 40 (172)
T COG1056 7 VYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSA 40 (172)
T ss_pred EEEeccCCccHhHHHHHHHHHHhCCEEEEEEccC
Confidence 6788888864 5667778888898 88899983
No 268
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=27.35 E-value=3.9e+02 Score=25.00 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=50.8
Q ss_pred cccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC---C----CCcccEEE
Q 026284 61 KDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP---K----DKKASLVV 133 (240)
Q Consensus 61 RP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~----d~~adl~I 133 (240)
.+.|.|.| .+|.+ ...+.++.||++|. ||.. .++..-+..|...|.++|..|..... . +....+..
T Consensus 304 ~~~V~f~g-~v~~~---~l~~~l~~adv~v~--~s~~-E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 304 EDKVEFVV-NAPFE---ELLEELSTASIGLH--TMWN-EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA 376 (419)
T ss_pred CCeEEEec-CCCHH---HHHHHHHhCeEEEE--CCcc-CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe
Confidence 45566665 45543 34467778998876 6655 66665566777889888887753221 1 23334443
Q ss_pred ECcHHHHHHHHHHHhcc
Q 026284 134 HAPVDKVIAGVMRHLNL 150 (240)
Q Consensus 134 ~g~~devl~~L~~~Lg~ 150 (240)
.+.+++...+.+.+..
T Consensus 377 -~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 -STAEEYAEAIEKILSL 392 (419)
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 5788777777766654
No 269
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=26.59 E-value=3.8e+02 Score=23.07 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=44.1
Q ss_pred ccccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--C-CCcccEEEECc
Q 026284 60 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--K-DKKASLVVHAP 136 (240)
Q Consensus 60 LRP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~-d~~adl~I~g~ 136 (240)
+.++|.+.|. ++.. ...++++.+|+++.- |..-.+...-...|...|.++|.-|....+ . +....+.+..
T Consensus 222 ~~~~v~~~G~-~~~~---~~~~~~~~~d~~v~p--s~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~- 294 (335)
T cd03802 222 DGPDIEYLGE-VGGA---EKAELLGNARALLFP--ILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDS- 294 (335)
T ss_pred cCCcEEEeCC-CCHH---HHHHHHHhCcEEEeC--CcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCC-
Confidence 3566776664 3432 345677889988773 321122222234677889999888776443 1 2223454443
Q ss_pred HHHHHHHHHH
Q 026284 137 VDKVIAGVMR 146 (240)
Q Consensus 137 ~devl~~L~~ 146 (240)
.+++...|.+
T Consensus 295 ~~~l~~~l~~ 304 (335)
T cd03802 295 VEELAAAVAR 304 (335)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 270
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=26.32 E-value=31 Score=21.18 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=7.2
Q ss_pred ccccceecCCCcc
Q 026284 15 NLLSCTAILFEKF 27 (240)
Q Consensus 15 sl~~~~C~~C~~~ 27 (240)
.+...+|..||..
T Consensus 8 ~l~~~rC~~Cg~~ 20 (37)
T PF12172_consen 8 RLLGQRCRDCGRV 20 (37)
T ss_dssp -EEEEE-TTT--E
T ss_pred EEEEEEcCCCCCE
Confidence 5667889999965
No 271
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=26.20 E-value=1.6e+02 Score=26.22 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=41.0
Q ss_pred HhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC------------CCCcccEEEECcHHHHHHHHHHH
Q 026284 82 NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP------------KDKKASLVVHAPVDKVIAGVMRH 147 (240)
Q Consensus 82 ~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~------------~d~~adl~I~g~~devl~~L~~~ 147 (240)
...++..+|.|||+.- |.+..+.. +...+++++-|-..+.. +.... -.+.|++.++|++|...
T Consensus 76 ~~~~ak~iLEiGT~~G-ySal~la~-al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I-~~~~G~a~e~L~~l~~~ 150 (247)
T PLN02589 76 KLINAKNTMEIGVYTG-YSLLATAL-ALPEDGKILAMDINRENYELGLPVIQKAGVAHKI-DFREGPALPVLDQMIED 150 (247)
T ss_pred HHhCCCEEEEEeChhh-HHHHHHHh-hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce-EEEeccHHHHHHHHHhc
Confidence 4456889999999887 55544443 22346677776554432 12222 34789999999998754
No 272
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=26.08 E-value=3.1e+02 Score=22.34 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=27.5
Q ss_pred hhhcCCCEEEEEcCCCCCC-CCcc-cEEEECcHHHHHHHHHHHhccc
Q 026284 107 KSLRGGGKIVIVNLQQTPK-DKKA-SLVVHAPVDKVIAGVMRHLNLW 151 (240)
Q Consensus 107 ~a~~~g~~lViIN~q~t~~-d~~a-dl~I~g~~devl~~L~~~Lg~~ 151 (240)
.++++|+++|++.+.+... .... ...-.....+++.+++++.|+.
T Consensus 102 ~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (198)
T cd01821 102 EARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVP 148 (198)
T ss_pred HHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCC
Confidence 3467788999988765431 1110 0011245678888999998864
No 273
>PF13289 SIR2_2: SIR2-like domain
Probab=25.92 E-value=1.4e+02 Score=22.88 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=34.0
Q ss_pred HHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCC----EEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhccc
Q 026284 76 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGG----KIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLW 151 (240)
Q Consensus 76 l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~----~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg~~ 151 (240)
+..+.+.+-.+.-+|+||-|+.=.....+...+.+..+ +.++|.+.+. ++....+++..|++
T Consensus 76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~i~ 141 (143)
T PF13289_consen 76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD--------------DENEREFLEKYGIE 141 (143)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc--------------hHHHHHHHHHcCCE
Confidence 44444444467788888999984444555544433222 2333333322 36666677776654
No 274
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.56 E-value=26 Score=23.64 Aligned_cols=12 Identities=0% Similarity=-0.177 Sum_probs=10.2
Q ss_pred ceecCCCcccch
Q 026284 19 CTAILFEKFAHL 30 (240)
Q Consensus 19 ~~C~~C~~~~~~ 30 (240)
.+|..||..|+-
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 579999999884
No 275
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=24.99 E-value=44 Score=22.19 Aligned_cols=14 Identities=0% Similarity=-0.242 Sum_probs=11.1
Q ss_pred cceecCCCcccchH
Q 026284 18 SCTAILFEKFAHLV 31 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ 31 (240)
+.+|..|+.+|+-+
T Consensus 1 ky~C~~CgyvYd~~ 14 (47)
T PF00301_consen 1 KYQCPVCGYVYDPE 14 (47)
T ss_dssp EEEETTTSBEEETT
T ss_pred CcCCCCCCEEEcCC
Confidence 35799999998853
No 276
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.74 E-value=3.5e+02 Score=23.55 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=32.9
Q ss_pred ccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC
Q 026284 62 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 123 (240)
Q Consensus 62 P~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t 123 (240)
++|.+.|. ++.+ +..+.+..||+++.-. ..+.....-...|...|.++|.-|....
T Consensus 248 ~~V~~~g~-~~~~---~~~~~~~~ad~~v~ps--~~~e~~~~~~~EAma~G~PvI~s~~~~~ 303 (363)
T cd04955 248 PRIIFVGP-IYDQ---ELLELLRYAALFYLHG--HSVGGTNPSLLEAMAYGCPVLASDNPFN 303 (363)
T ss_pred CcEEEccc-cChH---HHHHHHHhCCEEEeCC--ccCCCCChHHHHHHHcCCCEEEecCCcc
Confidence 45555543 2322 3456677889887643 3334443344567788999988776543
No 277
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.50 E-value=55 Score=35.00 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCcccc
Q 026284 47 TPRRCSDVKCGSRLKD 62 (240)
Q Consensus 47 ~~p~C~~~~CgG~LRP 62 (240)
..-+|| .|||.+.+
T Consensus 837 ~~~~~~--~~~~~~~~ 850 (1006)
T PRK12775 837 PYGMCP--ACGGKLQA 850 (1006)
T ss_pred CcCcCc--ccccchhh
Confidence 445899 99997543
No 278
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=24.31 E-value=1.4e+02 Score=28.31 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=36.9
Q ss_pred EEEcCCCCChhhHHHHHHHhcc-CCEEEEEcCCCCc-------cccccchhhhhcCCCEEEEEcCCCC
Q 026284 64 VLDWEDALPPVEMNPAEENCRM-ADVVLCLGTSLQI-------TPACNLPLKSLRGGGKIVIVNLQQT 123 (240)
Q Consensus 64 IV~FGE~lp~~~l~~a~~~~~~-aDLvLVIGTSL~V-------~Pa~~lp~~a~~~g~~lViIN~q~t 123 (240)
++.|.+.|+++.+....+.++. .-...=|||.|.. .|+-+++. |++.+|-.|.
T Consensus 306 ~iv~Sd~Lde~~i~~L~~~~~g~~~~~FGIGT~L~~d~~~~~~~~pl~~V~-------KLv~~~g~P~ 366 (377)
T cd01401 306 TLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKSTPLNIVI-------KLVECNGRPV 366 (377)
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCcceeEecCcceecCCCcccCCCCcceEE-------EEEEECCcce
Confidence 4889999999877666665554 3467889999986 44444432 6777776543
No 279
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=24.31 E-value=1e+02 Score=29.45 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHhc-cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCC
Q 026284 78 PAEENCR-MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 121 (240)
Q Consensus 78 ~a~~~~~-~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q 121 (240)
.+.+.+. ++|++||||..-. .-...|...|.+.|.+...|+-.
T Consensus 280 A~~~La~~~vD~miVVGG~nS-SNT~rL~eia~~~g~~ty~Ie~~ 323 (387)
T PRK13371 280 AMFSLVEEPLDLMVVIGGYNS-SNTTHLQEIAIERGIPSYHIDSP 323 (387)
T ss_pred HHHHHhhcCCCEEEEECCCCC-ccHHHHHHHHHhcCCCEEEECCH
Confidence 3444444 6999999998643 55667777777777777777543
No 280
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.79 E-value=4.3e+02 Score=22.00 Aligned_cols=47 Identities=6% Similarity=-0.076 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHh--ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCC
Q 026284 72 PPVEMNPAEENC--RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ 122 (240)
Q Consensus 72 p~~~l~~a~~~~--~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~ 122 (240)
++...+...+.+ ..+|-+|+.++... ......+.+.|.++|.+|...
T Consensus 45 ~~~~~~~~~~~~~~~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~~~~~~ 93 (270)
T cd06294 45 EEELLEEVKKMIQQKRVDGFILLYSRED----DPIIDYLKEEKFPFVVIGKPE 93 (270)
T ss_pred cHHHHHHHHHHHHHcCcCEEEEecCcCC----cHHHHHHHhcCCCEEEECCCC
Confidence 444455555554 34898888764322 223344567889999998754
No 281
>PRK08329 threonine synthase; Validated
Probab=23.62 E-value=47 Score=30.76 Aligned_cols=11 Identities=0% Similarity=-0.203 Sum_probs=8.3
Q ss_pred ceecCCCcccc
Q 026284 19 CTAILFEKFAH 29 (240)
Q Consensus 19 ~~C~~C~~~~~ 29 (240)
++|..||++|+
T Consensus 2 l~C~~Cg~~~~ 12 (347)
T PRK08329 2 LRCTKCGRTYE 12 (347)
T ss_pred cCcCCCCCCcC
Confidence 57888887765
No 282
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=23.31 E-value=36 Score=26.05 Aligned_cols=11 Identities=0% Similarity=-0.417 Sum_probs=8.0
Q ss_pred ceecCCCcccc
Q 026284 19 CTAILFEKFAH 29 (240)
Q Consensus 19 ~~C~~C~~~~~ 29 (240)
.+|-+||..+.
T Consensus 59 a~CkkCGfef~ 69 (97)
T COG3357 59 ARCKKCGFEFR 69 (97)
T ss_pred hhhcccCcccc
Confidence 57888887655
No 283
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=23.27 E-value=4.4e+02 Score=21.95 Aligned_cols=63 Identities=17% Similarity=-0.049 Sum_probs=34.5
Q ss_pred HHHHhc-cCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 026284 79 AEENCR-MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 79 a~~~~~-~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~L 148 (240)
.....+ .+|.+|++|+... ......+.++|.++|.++..... .. . ..+..+-.+....++++|
T Consensus 48 ~~~l~~~~vdgiii~~~~~~----~~~~~~l~~~~iPvv~~~~~~~~-~~-~-~~v~~d~~~~~~~~~~~l 111 (268)
T cd06273 48 ARKLLERGVDGLALIGLDHS----PALLDLLARRGVPYVATWNYSPD-SP-Y-PCVGFDNREAGRLAARHL 111 (268)
T ss_pred HHHHHhcCCCEEEEeCCCCC----HHHHHHHHhCCCCEEEEcCCCCC-CC-C-CEEEeChHHHHHHHHHHH
Confidence 333444 5899999887532 12223455678999999764321 11 1 134445555555555554
No 284
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=22.92 E-value=64 Score=22.65 Aligned_cols=8 Identities=63% Similarity=1.614 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q 026284 48 PRRCSDVKCG 57 (240)
Q Consensus 48 ~p~C~~~~Cg 57 (240)
...|| +||
T Consensus 48 ~Y~CP--~CG 55 (59)
T PRK14890 48 PYTCP--KCG 55 (59)
T ss_pred ceECC--CCC
Confidence 44566 565
No 285
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=22.92 E-value=3.3e+02 Score=22.99 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--C-CCcccEEEE-CcHHHHHHHHHHHh
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--K-DKKASLVVH-APVDKVIAGVMRHL 148 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~-d~~adl~I~-g~~devl~~L~~~L 148 (240)
..+..+.||++|.- |.. .....-...|...|.++|.-+..... . +....+.+. ++.+++...+.+.+
T Consensus 257 ~~~~~~~adi~i~p--s~~-e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~ 327 (359)
T cd03808 257 VPELLAAADVFVLP--SYR-EGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLI 327 (359)
T ss_pred HHHHHHhccEEEec--Ccc-cCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHH
Confidence 44567789987653 332 33333345677889988886655332 1 122334444 35777766666543
No 286
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=22.65 E-value=96 Score=23.95 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=21.1
Q ss_pred EEEcCCCC-ChhhHHHHHHHhccCCEEEEEcCCCC
Q 026284 64 VLDWEDAL-PPVEMNPAEENCRMADVVLCLGTSLQ 97 (240)
Q Consensus 64 IV~FGE~l-p~~~l~~a~~~~~~aDLvLVIGTSL~ 97 (240)
|+.+++.. +...++++.+.++++|++|+.|=...
T Consensus 3 i~~~sD~H~~~~~~~~~~~~~~~~d~vi~~GDi~~ 37 (156)
T PF12850_consen 3 IAVISDLHGNLDALEAVLEYINEPDFVIILGDIFD 37 (156)
T ss_dssp EEEEE--TTTHHHHHHHHHHHTTESEEEEES-SCS
T ss_pred EEEEeCCCCChhHHHHHHHHhcCCCEEEECCCchh
Confidence 45555553 33456677777788999999998544
No 287
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.52 E-value=4.5e+02 Score=21.83 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=24.1
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 123 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t 123 (240)
..+|-+|+.++.-. ......+.+.|.|+|.+|....
T Consensus 54 ~~vdgiIi~~~~~~----~~~~~~l~~~~ipvV~~~~~~~ 89 (265)
T cd06299 54 QRVDGIIVVPHEQS----AEQLEDLLKRGIPVVFVDREIT 89 (265)
T ss_pred cCCCEEEEcCCCCC----hHHHHHHHhCCCCEEEEecccC
Confidence 35899999876421 1223455678899999997643
No 288
>PRK05638 threonine synthase; Validated
Probab=21.92 E-value=59 Score=31.16 Aligned_cols=12 Identities=0% Similarity=-0.238 Sum_probs=8.8
Q ss_pred cceecCCCcccc
Q 026284 18 SCTAILFEKFAH 29 (240)
Q Consensus 18 ~~~C~~C~~~~~ 29 (240)
+++|..||++|+
T Consensus 1 ~l~C~~Cg~~~~ 12 (442)
T PRK05638 1 KMKCPKCGREYN 12 (442)
T ss_pred CeEeCCCCCCCC
Confidence 357888887765
No 289
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=21.89 E-value=1e+02 Score=31.21 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCC
Q 026284 76 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQ 121 (240)
Q Consensus 76 l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q 121 (240)
.+.+.+.+.++|++||||..-. .-..+|...|.+.|.+...|+-.
T Consensus 197 q~a~~~la~~~d~~~vvGg~~S-sNt~~L~~i~~~~~~~~~~ie~~ 241 (647)
T PRK00087 197 QEAAEKLAKKVDVMIVVGGKNS-SNTTKLYEICKSNCTNTIHIENA 241 (647)
T ss_pred HHHHHHHHhhCCEEEEECCCCC-ccHHHHHHHHHHHCCCEEEECCh
Confidence 4456667788999999998643 45667777787788888888544
No 290
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=21.88 E-value=4.4e+02 Score=22.40 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=38.4
Q ss_pred HHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--CCCcccEEEECcHHHHHHHHHHHhc
Q 026284 79 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVHAPVDKVIAGVMRHLN 149 (240)
Q Consensus 79 a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~d~~adl~I~g~~devl~~L~~~Lg 149 (240)
..+.+..||+++. +|.. .+...-...|...|.++|.-|..... ......+.+..+.+++...+.+.+.
T Consensus 275 ~~~~~~~adv~v~--ps~~-e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 344 (375)
T cd03821 275 KAAALADADLFVL--PSHS-ENFGIVVAEALACGTPVVTTDKVPWQELIEYGCGWVVDDDVDALAAALRRALE 344 (375)
T ss_pred HHHHHhhCCEEEe--cccc-CCCCcHHHHHHhcCCCEEEcCCCCHHHHhhcCceEEeCCChHHHHHHHHHHHh
Confidence 3445677998776 3332 34444445677889888876654322 1123445566666666555555443
No 291
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=21.88 E-value=2.6e+02 Score=27.98 Aligned_cols=76 Identities=8% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCCCCCcccEEEECcHHHHHHHHHHHhcccCCCCc
Q 026284 77 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYV 156 (240)
Q Consensus 77 ~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~~d~~adl~I~g~~devl~~L~~~Lg~~iP~~~ 156 (240)
....+..+.||++|++|..+.=+....+-.. .+ ..+++++-..-.+... +.+ =.=....++.+|.++++...-.|.
T Consensus 271 ~~~~e~vesaDlil~~G~~~sd~ss~~~~~~-~k-~~~~i~~~~d~v~i~~-~~f-~~v~mk~~l~~Lak~I~~~~~~~~ 346 (561)
T KOG1184|consen 271 PFVKEIVESADLIIFAGPLFNDYSSGGFSYL-YK-KKNAIEFHSDRVKIRN-ATF-GGVLMKDFLQELAKRIKKNKTSYE 346 (561)
T ss_pred HhHHHHHhhcCeEEEecccccccccceeEee-cC-ccceEEEecceEEecc-ccc-cceeHHHHHHHHHHhhcccccchh
Confidence 3567888999999999999987777666432 22 4466666555444322 111 112367888999999877766665
No 292
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=21.86 E-value=5.2e+02 Score=22.26 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=45.4
Q ss_pred ccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCC---CccccccchhhhhcCCCEEEEEcCCCCC---CCCcccEEEE-
Q 026284 62 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSL---QITPACNLPLKSLRGGGKIVIVNLQQTP---KDKKASLVVH- 134 (240)
Q Consensus 62 P~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL---~V~Pa~~lp~~a~~~g~~lViIN~q~t~---~d~~adl~I~- 134 (240)
++|.+.|.. +. +.....+..||++|.-.... ...+...-...+...|.++|..|....+ .+....+.+.
T Consensus 236 ~~v~~~g~~-~~---~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~ 311 (355)
T cd03799 236 DRVTLLGAK-SQ---EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPP 311 (355)
T ss_pred CeEEECCcC-Ch---HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCC
Confidence 455555533 43 24456677899877632211 0022222234566789999887765443 1222445554
Q ss_pred CcHHHHHHHHHHHhc
Q 026284 135 APVDKVIAGVMRHLN 149 (240)
Q Consensus 135 g~~devl~~L~~~Lg 149 (240)
++++++...|.+.+.
T Consensus 312 ~~~~~l~~~i~~~~~ 326 (355)
T cd03799 312 GDPEALADAIERLLD 326 (355)
T ss_pred CCHHHHHHHHHHHHh
Confidence 377777776666543
No 293
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=21.03 E-value=2.8e+02 Score=23.57 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=44.1
Q ss_pred ccccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--CCCcccEEEE-Cc
Q 026284 60 LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVH-AP 136 (240)
Q Consensus 60 LRP~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~d~~adl~I~-g~ 136 (240)
+.++|.++|.. ....+.++.||+++.-.. . .....-+..|...|.++|.-|..... ... ..+.+. ++
T Consensus 249 ~~~~v~~~g~~------~~~~~~~~~adi~v~ps~--~-e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~-~g~~~~~~~ 318 (365)
T cd03807 249 LEDKVILLGER------SDVPALLNALDVFVLSSL--S-EGFPNVLLEAMACGLPVVATDVGDNAELVGD-TGFLVPPGD 318 (365)
T ss_pred CCceEEEcccc------ccHHHHHHhCCEEEeCCc--c-ccCCcHHHHHHhcCCCEEEcCCCChHHHhhc-CCEEeCCCC
Confidence 34556665521 123456778998776333 2 33333345677889998876654332 112 334443 46
Q ss_pred HHHHHHHHHHHhc
Q 026284 137 VDKVIAGVMRHLN 149 (240)
Q Consensus 137 ~devl~~L~~~Lg 149 (240)
.+++...+.+.+.
T Consensus 319 ~~~l~~~i~~l~~ 331 (365)
T cd03807 319 PEALAEAIEALLA 331 (365)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
No 294
>PF14353 CpXC: CpXC protein
Probab=20.99 E-value=46 Score=26.09 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=13.5
Q ss_pred cccccccceecCCCcccch
Q 026284 12 QGRNLLSCTAILFEKFAHL 30 (240)
Q Consensus 12 HG~sl~~~~C~~C~~~~~~ 30 (240)
-| +++...|.+||+.+..
T Consensus 33 ~g-~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 33 DG-SLFSFTCPSCGHKFRL 50 (128)
T ss_pred cC-CcCEEECCCCCCceec
Confidence 47 8888888888877553
No 295
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=20.99 E-value=31 Score=31.17 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=37.4
Q ss_pred EEeccccccccee-------------cCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCC--CcccccEEEcCCC
Q 026284 9 LEYQGRNLLSCTA-------------ILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCG--SRLKDTVLDWEDA 70 (240)
Q Consensus 9 iElHG~sl~~~~C-------------~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~Cg--G~LRP~IV~FGE~ 70 (240)
+++|| ..+..+| .+||+.|+.+..+.-. ......+||...|. -.++|..+...+.
T Consensus 168 ~~i~~-e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l------~~~~~i~CPv~gC~~~~~~~~~~l~~d~e 237 (262)
T KOG2979|consen 168 ELIGQ-EVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQIL------CDEITIRCPVLGCENPYYIQPGHLDEDKE 237 (262)
T ss_pred HHhhh-hhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHh------ccCceeecccccCCccccccccccCchHH
Confidence 46778 7777887 3699998876544311 22467889988898 6778877755433
No 296
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=20.80 E-value=5.8e+02 Score=23.51 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=45.9
Q ss_pred cCCCCC-hhhHHHHHHHhccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCC------------CCCCCcccEEE
Q 026284 67 WEDALP-PVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQ------------TPKDKKASLVV 133 (240)
Q Consensus 67 FGE~lp-~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~------------t~~d~~adl~I 133 (240)
+.+... ......+.+.+++ +++-++|.+..-. +..+...+.+.+.|.|...... .+......+.+
T Consensus 42 ~dd~~d~~~a~~~~c~Li~~-gV~AI~G~~~s~~-~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 119 (363)
T cd06381 42 FIDLNNHFDAVQEACDLMNQ-GILALVTSTGCAS-AIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLAL 119 (363)
T ss_pred eecCCChHHHHHHHHHHHhc-CcEEEEecCChhH-HHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEE
Confidence 444444 3445566667777 9999999876522 2222223456667776643211 01112244566
Q ss_pred ECc--HHHHHHHHHHHhccc
Q 026284 134 HAP--VDKVIAGVMRHLNLW 151 (240)
Q Consensus 134 ~g~--~devl~~L~~~Lg~~ 151 (240)
+.+ ...++..+++.+||+
T Consensus 120 rp~~~~~~ai~~lv~~~~wk 139 (363)
T cd06381 120 RPPVRLNDVMLRLVTEWRWQ 139 (363)
T ss_pred eccHHHHHHHHHHHHhCCCe
Confidence 655 455666677777775
No 297
>PF13678 Peptidase_M85: NFkB-p65-degrading zinc protease
Probab=20.73 E-value=78 Score=28.32 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.9
Q ss_pred ECcHHHHHHHHHHHhcccCCCCcc
Q 026284 134 HAPVDKVIAGVMRHLNLWIPPYVR 157 (240)
Q Consensus 134 ~g~~devl~~L~~~Lg~~iP~~~~ 157 (240)
.|+.+-+-.+++..|||.||.|..
T Consensus 179 lGPTEILA~rVa~El~w~IP~F~~ 202 (250)
T PF13678_consen 179 LGPTEILAQRVAQELGWNIPDFKG 202 (250)
T ss_pred cChHHHHHHHHHHHcCCCCccccC
Confidence 465555667899999999999864
No 298
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=20.56 E-value=4.7e+02 Score=21.26 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHh-ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCC
Q 026284 77 NPAEENC-RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 123 (240)
Q Consensus 77 ~~a~~~~-~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t 123 (240)
+.+.+.+ .++|.+|+.+++..... ....+...|.++|.+|-...
T Consensus 46 ~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 46 SALENLIARGVDGIIIAPSDLTAPT---IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred HHHHHHHHcCCCEEEEecCCCcchh---HHHHhhhcCCCEEEeccCCC
Confidence 3344444 36899988877644221 23344567889999876643
No 299
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=20.48 E-value=28 Score=21.71 Aligned_cols=29 Identities=14% Similarity=-0.037 Sum_probs=11.9
Q ss_pred cceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCC
Q 026284 18 SCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCG 57 (240)
Q Consensus 18 ~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~Cg 57 (240)
...|..|++.+....+.. +...+.|. .|+
T Consensus 3 ~~~C~eC~~~f~dSyL~~---------~F~~~VCD--~CR 31 (34)
T PF01286_consen 3 YPKCDECGKPFMDSYLLN---------NFDLPVCD--KCR 31 (34)
T ss_dssp -EE-TTT--EES-SSCCC---------CTS-S--T--TT-
T ss_pred CchHhHhCCHHHHHHHHH---------hCCccccc--ccc
Confidence 467999998866432222 23567788 775
No 300
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=20.35 E-value=87 Score=21.44 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=16.1
Q ss_pred ceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCC
Q 026284 19 CTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCG 57 (240)
Q Consensus 19 ~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~Cg 57 (240)
++...|++.|+.+.++.-+ ......+||...|+
T Consensus 25 V~s~~C~H~fek~aI~~~i------~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 25 VKSKKCGHTFEKEAILQYI------QRNGSKRCPVAGCN 57 (57)
T ss_dssp EEESSS--EEEHHHHHHHC------TTTS-EE-SCCC-S
T ss_pred cCcCCCCCeecHHHHHHHH------HhcCCCCCCCCCCC
Confidence 3446899999976544332 12345679865564
No 301
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.06 E-value=5.9e+02 Score=22.19 Aligned_cols=63 Identities=8% Similarity=-0.032 Sum_probs=34.1
Q ss_pred ccCCEEEEEcCCCCccccccchhhhhcCCCEEEEEcCCCCC--CCC-cccEEEECcHHHHHHHHHHHh
Q 026284 84 RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDK-KASLVVHAPVDKVIAGVMRHL 148 (240)
Q Consensus 84 ~~aDLvLVIGTSL~V~Pa~~lp~~a~~~g~~lViIN~q~t~--~d~-~adl~I~g~~devl~~L~~~L 148 (240)
..+|-+|+.++.... .......+...|.|+|.+|..... .+. .....+..+-.+....+++.|
T Consensus 56 ~~vdgiii~~~~~~~--~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~a~~l 121 (303)
T cd01539 56 KGVDLLAVNLVDPTA--AQTVINKAKQKNIPVIFFNREPEEEDIKSYDKAYYVGTDAEQSGILQGKLI 121 (303)
T ss_pred cCCCEEEEecCchhh--HHHHHHHHHHCCCCEEEeCCCCcccccccccccceeeecHHHHHHHHHHHH
Confidence 469999888765321 122334456678999999975321 111 112235555555554444444
No 302
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=20.04 E-value=52 Score=27.46 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=22.6
Q ss_pred ccccceecCCCcccchHHHHhhhhhhhccCcCCCCCCCCCCCCCccc
Q 026284 15 NLLSCTAILFEKFAHLVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK 61 (240)
Q Consensus 15 sl~~~~C~~C~~~~~~~ey~r~~~~~~~~~~~~~p~C~~~~CgG~LR 61 (240)
..+..+|. |+..+-. +|. .+++. +...-+|. +|+|.|.
T Consensus 114 ~~~~Y~C~-C~q~~l~---~RR--hn~~~-~g~~YrC~--~C~gkL~ 151 (156)
T COG3091 114 TTYPYRCQ-CQQHYLR---IRR--HNTVR-RGEVYRCG--KCGGKLV 151 (156)
T ss_pred cceeEEee-cCCccch---hhh--ccccc-ccceEEec--cCCceEE
Confidence 56678899 9976332 122 12211 12257899 8999775
No 303
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=20.01 E-value=5.5e+02 Score=21.85 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=45.7
Q ss_pred ccEEEcCCCCChhhHHHHHHHhccCCEEEEEcCCCCccccccc---hhhhhcCCCEEEEEcCCCCCC---CCcccEEEE-
Q 026284 62 DTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNL---PLKSLRGGGKIVIVNLQQTPK---DKKASLVVH- 134 (240)
Q Consensus 62 P~IV~FGE~lp~~~l~~a~~~~~~aDLvLVIGTSL~V~Pa~~l---p~~a~~~g~~lViIN~q~t~~---d~~adl~I~- 134 (240)
++|.+.| .++.+ ...+.+..||+++....+-.. -...+ ...|...|.++|.-+...... +....+.+.
T Consensus 275 ~~v~~~g-~~~~~---~~~~~~~~~di~i~~~~~~~~-~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~ 349 (394)
T cd03794 275 DNVTFLG-RVPKE---ELPELLAAADVGLVPLKPGPA-FEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPP 349 (394)
T ss_pred CcEEEeC-CCChH---HHHHHHHhhCeeEEeccCccc-ccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCC
Confidence 5677666 55543 445677889998876554321 01111 235667898888876654431 112233343
Q ss_pred CcHHHHHHHHHHHh
Q 026284 135 APVDKVIAGVMRHL 148 (240)
Q Consensus 135 g~~devl~~L~~~L 148 (240)
++.+++...|.+.+
T Consensus 350 ~~~~~l~~~i~~~~ 363 (394)
T cd03794 350 GDPEALAAAILELL 363 (394)
T ss_pred CCHHHHHHHHHHHH
Confidence 46777666665554
Done!