BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026285
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis
thaliana GN=At2g21870 PE=1 SV=1
Length = 240
Score = 348 bits (894), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/240 (72%), Positives = 202/240 (84%)
Query: 1 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
MA+ASR S+SKQL VILQ+QHAI VR FA EAA KGDEMLK +F D+K KF+
Sbjct: 1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60
Query: 61 ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T IPDAR Y
Sbjct: 61 AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120
Query: 121 LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180
LL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKL
Sbjct: 121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180
Query: 181 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 240
GIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct: 181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
>sp|P80088|ATP7_SPIOL ATP synthase 28 kDa subunit, mitochondrial (Fragment) OS=Spinacia
oleracea PE=1 SV=1
Length = 32
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 23/25 (92%)
Query: 37 APQALKGDEMLKNIFLDVKKKFETA 61
AP+ LKG+EMLK IFL+VKKKFETA
Sbjct: 8 APKGLKGNEMLKGIFLEVKKKFETA 32
>sp|P80496|ATP7_SOLTU ATP synthase 27 kDa subunit, mitochondrial (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 33
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 36 AAPQALKGDEMLKNIFLDVKKKFETALGV 64
AAP LKGD++LK+IF +VK K ETA+GV
Sbjct: 5 AAPTTLKGDQVLKDIFYEVKNKLETAIGV 33
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 64 VLRKEKITIAPEDPAAVSQYANVMKTVREKAD-----LFSESQRI---AYTIETRTAGIP 115
+L++ + T+ + A+ QY +TV K + + E++++ T E +
Sbjct: 2277 LLKEAEETLMTLEAASADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAE 2336
Query: 116 DARTYLLTLKEI-RERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFD 174
+ YL + +++ +E + D+ A M+ L KVE + + +D + + EF
Sbjct: 2337 ELAAYLNSAQQLLKESKSKADKSNNIAKMLQ-LTKVENLVAA--ITDDLERVEAAKGEFQ 2393
Query: 175 KINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSL 234
K+N +G E+L E E+ A L E + D EA+E KKR +DE+ V+++ +
Sbjct: 2394 KLNVAIGNITENLKDKRE--EMTHAVTTLNETRNDVAEALEAAKKRVR-RDEKSVDMQLV 2450
Query: 235 DVR 237
+ +
Sbjct: 2451 NAK 2453
>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of
pyruvate dehydrogenase complex, mitochondrial
OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2
Length = 539
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 4 ASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLK 48
ASR+ + SK+L +L+R HA++VR F+N P + +++ K
Sbjct: 2 ASRIINHSKKLKHVSALLRRDHAVAVRCFSNSTHPSLVGREDIFK 46
>sp|P58356|TORS_ECO57 Sensor protein TorS OS=Escherichia coli O157:H7 GN=torS PE=3 SV=1
Length = 914
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 34 NEAAPQALKGDEMLKNIFLD--------VKKKFETALGVLRKEKITIAPEDPAAVSQYAN 85
NE AL+ +M+ N+ L+ ++K+ A+ +L++ +I I EDP +Q A
Sbjct: 204 NELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI--EDPGVRAQVAT 261
Query: 86 VMKTVREKAD---LFSESQRIAYTIET 109
+ TV + +D LF + I+ ++T
Sbjct: 262 TLTTVSQYSDLLALFQQDSEISNHLQT 288
>sp|P39453|TORS_ECOLI Sensor protein TorS OS=Escherichia coli (strain K12) GN=torS PE=1
SV=4
Length = 914
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 34 NEAAPQALKGDEMLKNIFLD--------VKKKFETALGVLRKEKITIAPEDPAAVSQYAN 85
NE AL+ +M+ N+ L+ ++K+ A+ +L++ +I I EDP +Q A
Sbjct: 204 NELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI--EDPGVRAQVAT 261
Query: 86 VMKTVREKADLFSESQR 102
+ TV + +DL + Q+
Sbjct: 262 TLTTVSQYSDLLALYQQ 278
>sp|O18416|TPM_DERPT Tropomyosin OS=Dermatophagoides pteronyssinus PE=1 SV=1
Length = 284
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 147 LEKVEKEIKKPLMRNDKKGMALLTAEFD--KINKKLGIRKEDLPKYEEQLELKIAKAQLE 204
L++V++++ + ++K AL TAE D +N+++ + +EDL + EE+ LKIA A+LE
Sbjct: 57 LDQVQEQLSAANTKLEEKEKALQTAEGDVAALNRRIQLIEEDLERSEER--LKIATAKLE 114
Query: 205 ELKKDALEA 213
E + A E+
Sbjct: 115 EASQSADES 123
>sp|Q23939|TPM_DERFA Tropomyosin OS=Dermatophagoides farinae PE=1 SV=2
Length = 284
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 147 LEKVEKEIKKPLMRNDKKGMALLTAEFD--KINKKLGIRKEDLPKYEEQLELKIAKAQLE 204
L++V++++ + ++K AL TAE D +N+++ + +EDL + EE+ LKIA A+LE
Sbjct: 57 LDQVQEQLSAANTKLEEKEKALQTAEGDVAALNRRIQLIEEDLERSEER--LKIATAKLE 114
Query: 205 ELKKDALEA 213
E + A E+
Sbjct: 115 EASQSADES 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,527,320
Number of Sequences: 539616
Number of extensions: 3146950
Number of successful extensions: 19986
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 501
Number of HSP's that attempted gapping in prelim test: 18884
Number of HSP's gapped (non-prelim): 1470
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)