Query 026285
Match_columns 240
No_of_seqs 27 out of 29
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02744 dihydrolipoyllysine-r 85.5 0.34 7.3E-06 48.6 0.9 47 2-48 1-47 (539)
2 COG0749 PolA DNA polymerase I 77.3 32 0.0007 35.5 11.4 172 40-219 381-574 (593)
3 KOG0005 Ubiquitin-like protein 64.9 6.3 0.00014 30.2 2.5 37 66-107 11-47 (70)
4 PF03732 Retrotrans_gag: Retro 62.7 23 0.0005 25.1 5.1 53 80-132 26-78 (96)
5 cd01043 DPS DPS protein, ferri 55.0 1E+02 0.0023 24.3 8.1 99 44-154 33-132 (139)
6 PRK11519 tyrosine kinase; Prov 53.1 2.8E+02 0.006 28.6 12.6 102 53-154 209-320 (719)
7 KOG4077 Cytochrome c oxidase, 52.1 19 0.00041 31.3 3.6 45 56-102 98-143 (149)
8 PF02436 PYC_OADA: Conserved c 51.1 41 0.00089 29.7 5.7 107 8-136 47-166 (196)
9 TIGR02990 ectoine_eutA ectoine 46.7 12 0.00026 33.6 1.7 24 143-166 194-217 (239)
10 PF06456 Arfaptin: Arfaptin-li 45.8 2.3E+02 0.005 25.6 10.3 29 187-215 168-197 (229)
11 PRK14178 bifunctional 5,10-met 45.6 61 0.0013 30.3 6.1 71 41-113 3-82 (279)
12 PRK10455 periplasmic protein; 44.7 74 0.0016 27.3 6.1 37 70-106 91-139 (161)
13 PRK14182 bifunctional 5,10-met 44.5 73 0.0016 29.9 6.5 72 41-113 4-86 (282)
14 PF11791 Aconitase_B_N: Aconit 42.2 54 0.0012 28.6 4.9 70 89-160 7-79 (154)
15 COG2012 RPB5 DNA-directed RNA 42.1 12 0.00026 29.6 0.8 22 171-192 24-45 (80)
16 PRK14180 bifunctional 5,10-met 42.1 76 0.0017 29.7 6.2 72 41-113 4-87 (282)
17 PRK09841 cryptic autophosphory 41.2 4.2E+02 0.0092 27.3 13.6 86 68-153 230-319 (726)
18 PF07813 LTXXQ: LTXXQ motif fa 40.9 75 0.0016 23.1 4.9 52 53-104 18-95 (100)
19 PRK14194 bifunctional 5,10-met 40.4 85 0.0018 29.7 6.3 72 41-113 7-89 (301)
20 TIGR03017 EpsF chain length de 40.2 3.2E+02 0.0069 25.6 11.2 70 69-138 135-208 (444)
21 PRK09448 DNA starvation/statio 39.0 2E+02 0.0044 24.3 7.8 96 44-154 57-153 (162)
22 PLN02897 tetrahydrofolate dehy 38.6 51 0.0011 31.9 4.6 74 39-113 57-142 (345)
23 PRK14192 bifunctional 5,10-met 37.3 1.2E+02 0.0025 28.1 6.6 72 41-113 6-89 (283)
24 PRK14181 bifunctional 5,10-met 37.1 1E+02 0.0022 29.0 6.2 70 41-112 3-81 (287)
25 COG3473 Maleate cis-trans isom 36.9 28 0.0006 32.3 2.4 33 144-183 193-225 (238)
26 PF00763 THF_DHG_CYH: Tetrahyd 36.7 82 0.0018 25.1 4.9 57 41-98 3-61 (117)
27 PF05130 FlgN: FlgN protein; 36.3 1.5E+02 0.0032 22.5 6.1 50 45-94 4-53 (143)
28 PRK14186 bifunctional 5,10-met 35.9 1.1E+02 0.0024 28.9 6.3 72 41-113 5-88 (297)
29 PRK14574 hmsH outer membrane p 35.5 4.4E+02 0.0095 28.2 11.1 97 19-123 77-175 (822)
30 PRK14168 bifunctional 5,10-met 35.1 1.2E+02 0.0026 28.6 6.4 72 41-113 6-89 (297)
31 COG0783 Dps DNA-binding ferrit 35.0 1.7E+02 0.0037 25.2 6.8 65 79-154 81-148 (156)
32 KOG0994 Extracellular matrix g 34.9 5.7E+02 0.012 29.7 12.0 175 56-235 1471-1674(1758)
33 PF07361 Cytochrom_B562: Cytoc 34.2 88 0.0019 24.8 4.6 34 164-208 60-93 (103)
34 PRK14166 bifunctional 5,10-met 34.0 1.6E+02 0.0034 27.6 6.9 71 41-112 4-85 (282)
35 PF06992 Phage_lambda_P: Repli 33.8 3.9E+02 0.0085 24.8 10.6 84 94-184 118-230 (233)
36 PF03564 DUF1759: Protein of u 33.4 1.5E+02 0.0033 23.3 6.0 58 45-103 61-121 (145)
37 PRK10792 bifunctional 5,10-met 33.1 1.6E+02 0.0036 27.6 6.9 71 41-112 6-88 (285)
38 cd00923 Cyt_c_Oxidase_Va Cytoc 32.9 63 0.0014 26.7 3.6 46 56-102 56-101 (103)
39 COG1529 CoxL Aerobic-type carb 32.7 57 0.0012 33.8 4.2 61 74-134 348-411 (731)
40 PLN02616 tetrahydrofolate dehy 32.5 1.6E+02 0.0035 28.8 7.0 72 40-112 75-158 (364)
41 PRK14189 bifunctional 5,10-met 32.2 72 0.0016 29.9 4.4 71 41-112 6-87 (285)
42 PRK14187 bifunctional 5,10-met 31.2 1.4E+02 0.0031 28.1 6.2 72 41-113 5-88 (294)
43 PRK14183 bifunctional 5,10-met 30.9 1.6E+02 0.0035 27.6 6.4 72 41-113 4-87 (281)
44 PRK14172 bifunctional 5,10-met 30.8 1.5E+02 0.0033 27.7 6.3 72 41-113 5-88 (278)
45 PLN03060 inositol phosphatase- 30.7 4.1E+02 0.009 24.1 11.2 117 73-221 82-202 (206)
46 PF11827 DUF3347: Protein of u 30.3 1.3E+02 0.0029 25.7 5.4 54 73-126 61-119 (174)
47 PRK11546 zraP zinc resistance 29.9 75 0.0016 27.3 3.8 46 65-115 77-122 (143)
48 PF03704 BTAD: Bacterial trans 29.7 84 0.0018 24.4 3.8 20 78-97 114-133 (146)
49 COG1938 Archaeal enzymes of AT 29.3 1.5E+02 0.0033 27.5 6.0 59 158-222 181-239 (244)
50 PRK14175 bifunctional 5,10-met 29.2 90 0.0019 29.2 4.5 72 41-113 6-88 (286)
51 PLN02516 methylenetetrahydrofo 29.0 81 0.0018 29.8 4.2 73 40-113 11-95 (299)
52 PRK14184 bifunctional 5,10-met 28.9 1.5E+02 0.0032 27.9 5.9 71 41-112 4-86 (286)
53 PRK14185 bifunctional 5,10-met 28.7 1.9E+02 0.0041 27.3 6.6 71 41-112 4-86 (293)
54 PRK14193 bifunctional 5,10-met 28.5 2.1E+02 0.0046 26.8 6.8 72 41-113 6-88 (284)
55 PRK05883 acyl carrier protein; 28.5 1.2E+02 0.0026 23.3 4.4 79 74-180 9-88 (91)
56 PF13438 DUF4113: Domain of un 28.2 51 0.0011 23.2 2.1 17 167-183 2-18 (52)
57 PRK08045 cystathionine gamma-s 27.3 21 0.00046 33.5 0.1 26 127-152 360-385 (386)
58 PF02630 SCO1-SenC: SCO1/SenC; 27.1 85 0.0018 26.3 3.6 60 48-109 72-133 (174)
59 PRK14179 bifunctional 5,10-met 26.7 96 0.0021 29.0 4.2 72 41-113 5-88 (284)
60 PRK14176 bifunctional 5,10-met 26.5 85 0.0018 29.5 3.8 71 41-112 11-93 (287)
61 PRK12750 cpxP periplasmic repr 26.3 1.7E+02 0.0037 25.3 5.4 36 70-105 98-145 (170)
62 cd07631 BAR_APPL1 The Bin/Amph 26.3 4.3E+02 0.0093 24.2 8.2 24 159-182 100-123 (215)
63 TIGR03007 pepcterm_ChnLen poly 25.6 6E+02 0.013 24.3 10.7 70 69-138 125-198 (498)
64 PRK14167 bifunctional 5,10-met 25.5 1.2E+02 0.0026 28.7 4.6 71 41-112 5-86 (297)
65 PRK14191 bifunctional 5,10-met 24.9 1.1E+02 0.0024 28.7 4.3 72 41-113 4-87 (285)
66 PRK14188 bifunctional 5,10-met 24.8 2.5E+02 0.0054 26.4 6.6 72 41-113 5-88 (296)
67 PF10123 Mu-like_Pro: Mu-like 24.7 89 0.0019 29.0 3.6 103 78-189 220-326 (326)
68 COG0190 FolD 5,10-methylene-te 24.4 1.7E+02 0.0037 27.7 5.5 70 41-111 3-84 (283)
69 TIGR03060 PS_II_psb29 photosys 23.6 3.2E+02 0.007 24.9 6.9 122 73-220 84-209 (214)
70 PRK14173 bifunctional 5,10-met 23.2 1.2E+02 0.0027 28.4 4.3 70 41-112 6-84 (287)
71 PRK14174 bifunctional 5,10-met 23.1 1.3E+02 0.0027 28.4 4.3 72 41-113 4-87 (295)
72 PLN02469 hydroxyacylglutathion 23.0 1.7E+02 0.0037 26.2 5.0 49 71-121 186-237 (258)
73 PRK14169 bifunctional 5,10-met 22.3 1.4E+02 0.003 28.0 4.4 71 41-112 4-85 (282)
74 PRK13266 Thf1-like protein; Re 22.1 3.6E+02 0.0079 24.8 6.9 121 73-217 84-208 (225)
75 PF05511 ATP-synt_F6: Mitochon 21.9 1.7E+02 0.0037 23.9 4.3 67 27-97 18-84 (99)
76 PRK11546 zraP zinc resistance 21.6 5.2E+02 0.011 22.2 8.0 22 107-131 91-112 (143)
77 PF13871 Helicase_C_4: Helicas 21.5 1.8E+02 0.0039 27.3 5.0 55 68-127 188-243 (278)
78 PF04614 Pex19: Pex19 protein 21.4 1.6E+02 0.0035 26.7 4.5 136 48-196 7-177 (248)
79 PF02284 COX5A: Cytochrome c o 20.9 59 0.0013 27.0 1.5 45 56-101 59-103 (108)
80 PRK14171 bifunctional 5,10-met 20.3 2.7E+02 0.0058 26.3 5.8 72 41-113 5-88 (288)
81 TIGR02215 phage_chp_gp8 phage 20.3 1.5E+02 0.0033 25.8 4.0 39 123-161 15-56 (188)
No 1
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=85.51 E-value=0.34 Score=48.63 Aligned_cols=47 Identities=40% Similarity=0.632 Sum_probs=43.7
Q ss_pred hhhhhhhhhhhhhhhhHHHHhhccchhHhhhhhhcCCcCCCchhHHH
Q 026285 2 AFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLK 48 (240)
Q Consensus 2 a~~~R~~srs~~~~~~~~~~~~~~~~~vR~fA~~Aap~~~kgdd~lK 48 (240)
+++||++..|+.|+....+|...|+..||+|+....+...+||++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (539)
T PLN02744 1 AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAK 47 (539)
T ss_pred CchHHHhhhchhhcchHHHhcccccceEEEecCCCccCcccccchhh
Confidence 47899999999999999999999999999999998888889999855
No 2
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=77.30 E-value=32 Score=35.51 Aligned_cols=172 Identities=20% Similarity=0.225 Sum_probs=126.0
Q ss_pred CCCchhHHHHHHHHHHH-HHHHHHhhhhccccccCCCCHHHHHHHHHHH----------HHHHHhcCCCChHHHHHHHHH
Q 026285 40 ALKGDEMLKNIFLDVKK-KFETALGVLRKEKITIAPEDPAAVSQYANVM----------KTVREKADLFSESQRIAYTIE 108 (240)
Q Consensus 40 ~~kgdd~lK~iF~~vqk-kF~~~l~~lkk~ki~idp~DpaAV~~YA~~~----------~~ir~k~gl~s~~e~I~~tie 108 (240)
-+++|+.|++-|.+=+- -=.|+..+|-.....++ ......|+-| ..+-+.+|||- .-.+..|+
T Consensus 381 Hls~D~~Ll~AF~~g~DiH~~TA~~vFgv~~~~Vt----~e~Rr~AKaINFGiiYG~safgLa~~L~I~~--~eA~~~I~ 454 (593)
T COG0749 381 HLSQDEGLLRAFTEGEDIHTATAAEVFGVPIEEVT----SEQRRKAKAINFGLIYGMSAFGLAQQLGIPR--KEAKEYID 454 (593)
T ss_pred HhcCCHHHHHHHhcCccHHHHHHHHHhCCChhhCC----HHHhhhhhhhccceeeccchhhHHHHcCCCh--HHHHHHHH
Confidence 35568888888753211 01245555543333333 3444444443 46778899988 55788999
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHcC-----------CCchhhhHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHH
Q 026285 109 TRTAGIPDARTYLLTLKEIRERRG-----------LIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKIN 177 (240)
Q Consensus 109 ~~~~~~~daR~yL~~l~EiR~~~G-----------l~D~~G~~a~mm~ALdkvEK~igkpL~r~DkkGM~~L~ae~~kin 177 (240)
..+...|.|+.|++...+.=++-| +.+-..-....-.+-+ =-.++.|+--+-+-=+++-+=.+++.-
T Consensus 455 ~YF~rypgv~~ym~~~~~~ar~~GyV~Tl~gRRry~p~i~s~n~~~R~~aE--R~AiNaPIQGTAADiiK~AMI~vd~~l 532 (593)
T COG0749 455 RYFERYPGVKEYMERTKEEAREDGYVETLFGRRRYLPDINSSNRVVRAAAE--RAAINAPIQGTAADIIKLAMIKVDKAL 532 (593)
T ss_pred HHHHhChHHHHHHHHHHHHHHHcCceeecccccccCcccccCCHHHHHHHH--HHHhcCcCcccHHHHHHHHHHhHHHHH
Confidence 999999999999998877655544 4444433333444444 347899999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026285 178 KKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKK 219 (240)
Q Consensus 178 kklGi~~eDl~K~eee~el~~aK~~L~elkk~a~e~m~~~kk 219 (240)
+.-+++.-.+=-+--|+.+|.-+.+++++++-.-+.|+..-.
T Consensus 533 ~~~~~~~rllLQVHDELvfEv~~~e~e~~~~~v~~~Me~a~~ 574 (593)
T COG0749 533 KEEKLKARLLLQVHDELVFEVPKEELEEVKKLLKAIMENAVN 574 (593)
T ss_pred hhcchhhhhHHhhhhhhhhcCcHhHHHHHHHHHHHHHHHhhc
Confidence 999887778888999999999999999999999999999855
No 3
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=64.95 E-value=6.3 Score=30.17 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=28.4
Q ss_pred hccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 026285 66 RKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTI 107 (240)
Q Consensus 66 kk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~ti 107 (240)
+.+.|.|+|.|. -....+.+-++-|||++.||+-++=
T Consensus 11 KeIeidIep~Dk-----verIKErvEEkeGIPp~qqrli~~g 47 (70)
T KOG0005|consen 11 KEIEIDIEPTDK-----VERIKERVEEKEGIPPQQQRLIYAG 47 (70)
T ss_pred ceEEEeeCcchH-----HHHHHHHhhhhcCCCchhhhhhhcc
Confidence 456788888874 2345677889999999999997753
No 4
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=62.75 E-value=23 Score=25.08 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcC
Q 026285 80 VSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRG 132 (240)
Q Consensus 80 V~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~G 132 (240)
+.-|.+....+++..+=+.........+..++|+..+|+.|+....++....+
T Consensus 26 ~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q~~esv~~y~~rf~~l~~~~~ 78 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPPDRKEQARQELNSLRQGNESVREYVNRFRELARRAP 78 (96)
T ss_pred CCCHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcHHHHHHHHHHHHHHCC
Confidence 45677778888888887777777788888889999999999999999998888
No 5
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=55.00 E-value=1e+02 Score=24.29 Aligned_cols=99 Identities=11% Similarity=0.220 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKA-DLFSESQRIAYTIETRTAGIPDARTYLL 122 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~-gl~s~~e~I~~tie~~~~~~~daR~yL~ 122 (240)
-+.+...+.+..+.+..+-+-+....-. .+++|+.+.+++... +.- +-.++.+.+...++.+.+-+...|.=..
T Consensus 33 h~~l~e~~~~~~~~~D~lAERi~~lgg~-P~~~~~~~~~~s~l~----~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~ 107 (139)
T cd01043 33 HELFEELYDELREAIDEIAERIRALGGK-PLGTLKEYAELSTIK----EEPAGVLSAKEMVAELLEDYETLIEELREAIE 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHhHCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888887777766 368888888886642 222 5567777787777776655444443333
Q ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 123 ~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.+.+ ..+-++..+|.+-+...||.+
T Consensus 108 ~a~~-------~~D~~t~~ll~~il~~~ek~~ 132 (139)
T cd01043 108 LADE-------AGDPATADLLTEIIRELEKQA 132 (139)
T ss_pred HHHH-------cCCHHHHHHHHHHHHHHHHHH
Confidence 3332 456788888888888888864
No 6
>PRK11519 tyrosine kinase; Provisional
Probab=53.05 E-value=2.8e+02 Score=28.61 Aligned_cols=102 Identities=14% Similarity=0.238 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhhh--c----cccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHH--
Q 026285 53 DVKKKFETALGVLR--K----EKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTL-- 124 (240)
Q Consensus 53 ~vqkkF~~~l~~lk--k----~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l-- 124 (240)
.+-..+..-|.+.+ + +.|.....||.-....+|..-..--+-.+-.-.+....+++.+.+..+.+|+=|..+
T Consensus 209 ~~~~~l~~~l~V~~~~k~S~ii~Is~~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~ 288 (719)
T PRK11519 209 GMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAEN 288 (719)
T ss_pred HHHHHHHhcceEEecCCCceEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555532 1 567778899999999999887776666666666777788888888888888877764
Q ss_pred --HHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 125 --KEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 125 --~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.++|.+.|+.|...--....+.+.++++++
T Consensus 289 ~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 289 KLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 889999999775443333555666555543
No 7
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.10 E-value=19 Score=31.27 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhccccccCCCCHHH-HHHHHHHHHHHHHhcCCCChHHH
Q 026285 56 KKFETALGVLRKEKITIAPEDPAA-VSQYANVMKTVREKADLFSESQR 102 (240)
Q Consensus 56 kkF~~~l~~lkk~ki~idp~DpaA-V~~YA~~~~~ir~k~gl~s~~e~ 102 (240)
+.|-+++-+|-..|+-. |+... -..|-+..+-++.++|||+++|.
T Consensus 98 NDfa~aVRilE~iK~K~--g~~k~~Y~y~v~elkpvl~ELGI~t~EeL 143 (149)
T KOG4077|consen 98 NDFATAVRILEAIKDKC--GAQKQVYPYYVKELKPVLNELGIPTPEEL 143 (149)
T ss_pred ccHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 57888888888888885 44444 56677888899999999999874
No 8
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=51.12 E-value=41 Score=29.75 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=59.1
Q ss_pred hhhhhhhhhhHHHHhhcc----------chhHhhhhhh--cCCcCCCchhHHHHHHHHHHHHHHHHHhhhhccccccCCC
Q 026285 8 ASKSKQLCSSQVILQRQH----------AISVRFFANE--AAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPE 75 (240)
Q Consensus 8 ~srs~~~~~~~~~~~~~~----------~~~vR~fA~~--Aap~~~kgdd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~ 75 (240)
+--|+|+.|.||.++=.. .-+|+.|... ..||+--..++.+.|... ...|+..|+
T Consensus 47 VTPsSqiVg~qA~~nV~~~~~g~r~~~~p~~v~~~~~G~~G~pp~~~~~~l~~~vl~~-------------~~~i~~RP~ 113 (196)
T PF02436_consen 47 VTPSSQIVGDQAVFNVLNGLLGERYKDFPDSVVDYLLGKYGKPPGGFPEELRKKVLKG-------------EEPITGRPG 113 (196)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHTTTSS-BHHHHHHHTTTT---TTSS-HHHHHHHHTT-------------S---SSSGG
T ss_pred cCcHHHHHHHHHHHHHHhhhcCccccchhHHHHHHhCcccCCCCCCCCHHHHHHHhcC-------------CCCCCCCcc
Confidence 456899999999887655 2456777775 555554456677766322 234444455
Q ss_pred CHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCch
Q 026285 76 DPAAVSQYANVMKTVREKADL-FSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDE 136 (240)
Q Consensus 76 DpaAV~~YA~~~~~ir~k~gl-~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~ 136 (240)
|.-.=-.+....+.+.++.|- +++++.+++.+=- ..++.|+. .|.++|.-..
T Consensus 114 ~~l~p~d~~~~r~~l~~~~g~~~~dedvlsyal~P-----~v~~~f~~----~~~~~g~~~~ 166 (196)
T PF02436_consen 114 DLLPPADLDKLRKELEEKAGREPTDEDVLSYALFP-----KVAEDFLK----FRAKYGDVSV 166 (196)
T ss_dssp GCS----HHHHHHHHHHHCTSTSCHHHHHHHHHCH-----HHHHHHHH----HHHHHS-GGC
T ss_pred ccCChhhHHHHHHHHHHHcCCCCCHHHHHHHhcCc-----hhHHHHHH----HHHhcCCCCc
Confidence 544444567777788888776 5777777776621 12355554 3555664333
No 9
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=46.73 E-value=12 Score=33.60 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhCCccccccHhhH
Q 026285 143 MMDALEKVEKEIKKPLMRNDKKGM 166 (240)
Q Consensus 143 mm~ALdkvEK~igkpL~r~DkkGM 166 (240)
..+.++++|.++|||+++||-.-+
T Consensus 194 t~~vi~~lE~~lGkPVlsSNqat~ 217 (239)
T TIGR02990 194 AATCAQRIEQAIGKPVVTSNQATA 217 (239)
T ss_pred hHHHHHHHHHHHCCCEEEHHHHHH
Confidence 467899999999999999997653
No 10
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=45.85 E-value=2.3e+02 Score=25.58 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=22.5
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 026285 187 LPKYEE-QLELKIAKAQLEELKKDALEAME 215 (240)
Q Consensus 187 l~K~ee-e~el~~aK~~L~elkk~a~e~m~ 215 (240)
.|++++ +..+..+|...+.||.|++.-|+
T Consensus 168 ~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~ 197 (229)
T PF06456_consen 168 EPKFRVAQGNYQEAKERFDKLRSDVLVKLD 197 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455543 45668999999999999988776
No 11
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.61 E-value=61 Score=30.30 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=54.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHhh
Q 026285 41 LKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIETRT 111 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~~~ 111 (240)
+.|-.+-+.|..+++++...+ +...+.-+.+.++|| |-..|.+.....-+++||.+ .++.+...|+.+-
T Consensus 3 l~Gk~~a~~i~~~~~~~v~~l-g~~P~Laii~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 80 (279)
T PRK14178 3 LDGKAVSEKRLELLKEEIIES-GLYPRLATVIVGDDP-ASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLN 80 (279)
T ss_pred eeHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356777888999999998886 888888888886666 55679999999999999975 2345677777764
Q ss_pred cC
Q 026285 112 AG 113 (240)
Q Consensus 112 ~~ 113 (240)
.+
T Consensus 81 ~D 82 (279)
T PRK14178 81 ED 82 (279)
T ss_pred CC
Confidence 43
No 12
>PRK10455 periplasmic protein; Reviewed
Probab=44.69 E-value=74 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=26.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHHHH
Q 026285 70 ITIAPEDPAAVSQYANVMKTVREK------------ADLFSESQRIAYT 106 (240)
Q Consensus 70 i~idp~DpaAV~~YA~~~~~ir~k------------~gl~s~~e~I~~t 106 (240)
|+-++-|+++|..+++.+-.+... ..+++|+|+-+..
T Consensus 91 i~ad~FDeaavra~~~k~~~~~~~~~~~~~~~~~qiy~vLTPEQr~q~~ 139 (161)
T PRK10455 91 IASDTFDKAKAEAQITKMEAQRKARMLAHMETQNKIYNVLTPEQKKQFN 139 (161)
T ss_pred HccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455677999999999876555443 5788888886543
No 13
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.50 E-value=73 Score=29.90 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=54.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~ 109 (240)
+.|..+-+.|..+.++..+.+- +...++-+.+.++|| +-..|.+.....-+++||.+ .++.+..+|+.
T Consensus 4 ldGk~iA~~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~ 82 (282)
T PRK14182 4 IDGKQIAAKVKGEVATEVRALAARGVQTGLTVVRVGDDP-ASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIAR 82 (282)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567777888888888888765 456677777775555 66789999999999999975 34567788887
Q ss_pred hhcC
Q 026285 110 RTAG 113 (240)
Q Consensus 110 ~~~~ 113 (240)
+-++
T Consensus 83 lN~d 86 (282)
T PRK14182 83 LNAD 86 (282)
T ss_pred HhCC
Confidence 7554
No 14
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=42.19 E-value=54 Score=28.65 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=48.2
Q ss_pred HHHHhcCCCC---hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhhCCcccc
Q 026285 89 TVREKADLFS---ESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMR 160 (240)
Q Consensus 89 ~ir~k~gl~s---~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~igkpL~r 160 (240)
.=|...|||| ..++....++-+..+...=+.||..|-..|..-|..+...++|.-+.++-+ +++.-|+.+
T Consensus 7 ~eRa~~GipPlPL~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~--g~~~~~~Is 79 (154)
T PF11791_consen 7 AERAALGIPPLPLNAEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAK--GEISSPLIS 79 (154)
T ss_dssp HHHHCTT-------HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHT--TSS-BTTB-
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHc--CCccCCCcC
Confidence 3477889987 478888999998888888889999999999999999999999988887754 345556655
No 15
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=42.15 E-value=12 Score=29.58 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHH
Q 026285 171 AEFDKINKKLGIRKEDLPKYEE 192 (240)
Q Consensus 171 ae~~kinkklGi~~eDl~K~ee 192 (240)
+|...+.|+|||+|++|||+..
T Consensus 24 eE~~~vLk~l~i~~~qLPkI~~ 45 (80)
T COG2012 24 EEAKEVLKELGIEPEQLPKIKA 45 (80)
T ss_pred HHHHHHHHHhCCCHHHCCcccc
Confidence 5678899999999999999864
No 16
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.06 E-value=76 Score=29.72 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=52.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|-.+-+.|-.++++..+.+- +...++-+.+.++|| |-..|.+.....-+++||.+. ++.+...|+
T Consensus 4 ldGk~va~~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 82 (282)
T PRK14180 4 IDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDP-ASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELID 82 (282)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4566677777777887777765 345667777776666 556699999999999998653 356778887
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 83 ~lN~D 87 (282)
T PRK14180 83 QLNND 87 (282)
T ss_pred HHhCC
Confidence 76543
No 17
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.16 E-value=4.2e+02 Score=27.33 Aligned_cols=86 Identities=14% Similarity=0.270 Sum_probs=59.9
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHH----HHHHHHcCCCchhhhHHHH
Q 026285 68 EKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTL----KEIRERRGLIDEHGAEAMM 143 (240)
Q Consensus 68 ~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l----~EiR~~~Gl~D~~G~~a~m 143 (240)
+.|.+...||.-....+|..-.+=-+-.+-.-.+....+++.+.+..+.+++=|..+ ..+|.+.|+-|...--...
T Consensus 230 i~Is~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~ 309 (726)
T PRK09841 230 LELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAV 309 (726)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 456777899999999888766655444555556677778888888888888877764 8899999997744222334
Q ss_pred HHHHHHHHHh
Q 026285 144 MDALEKVEKE 153 (240)
Q Consensus 144 m~ALdkvEK~ 153 (240)
.+-+.+++.+
T Consensus 310 l~~~~~l~~q 319 (726)
T PRK09841 310 LEQIVNVDNQ 319 (726)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 18
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=40.89 E-value=75 Score=23.14 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhcccccc------------CCCCHHHHHHHH--HHHHHHHHh------------cCCCChHHHHH
Q 026285 53 DVKKKFETALGVLRKEKITI------------APEDPAAVSQYA--NVMKTVREK------------ADLFSESQRIA 104 (240)
Q Consensus 53 ~vqkkF~~~l~~lkk~ki~i------------dp~DpaAV~~YA--~~~~~ir~k------------~gl~s~~e~I~ 104 (240)
+|+.+|.++...++...-++ ..-|.+.+..+. ..+..++.+ .++++|+|+-.
T Consensus 18 eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLt~eQk~~ 95 (100)
T PF07813_consen 18 EQKAKWRAIRQAMKAKMKPLKAMREQLRALRDPSFDEAAPEALAAMAEMMELRAEMMEERAKAQHALYAVLTPEQKEK 95 (100)
T ss_dssp HHHHHHHHHHHHHCTTS------HHHHHHHHHSS--HHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566666666555554444 345666776666 444444433 56677776643
No 19
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.43 E-value=85 Score=29.67 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=54.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~ 109 (240)
+.|..+-+.|..++++..+.+- +..+++-+.+.++|| |-..|.+.....-+++||.+ .++.+...|+.
T Consensus 7 l~Gk~iA~~i~~~lk~~i~~l~~~g~~P~LaiI~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~ 85 (301)
T PRK14194 7 IDGKAAAARVLAQVREDVRTLKAAGIEPALAVILVGNDP-ASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAE 85 (301)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677888888888888887754 345666677765555 67889999999999999976 35567788887
Q ss_pred hhcC
Q 026285 110 RTAG 113 (240)
Q Consensus 110 ~~~~ 113 (240)
+-++
T Consensus 86 lN~D 89 (301)
T PRK14194 86 LNAD 89 (301)
T ss_pred HcCC
Confidence 7554
No 20
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.18 E-value=3.2e+02 Score=25.64 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=48.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHH----HHHHHHHcCCCchhh
Q 026285 69 KITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT----LKEIRERRGLIDEHG 138 (240)
Q Consensus 69 ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~----l~EiR~~~Gl~D~~G 138 (240)
.|.....||.-....+|.+-+.--+..+-.-.+....+++.+....+.+|+=|.. +..+|.+.|+.+..+
T Consensus 135 ~is~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~ 208 (444)
T TIGR03017 135 SIEFSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDE 208 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCc
Confidence 4555668999999988877776555555444455556666666666666665554 678999999976543
No 21
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=38.97 E-value=2e+02 Score=24.25 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVRE-KADLFSESQRIAYTIETRTAGIPDARTYLL 122 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~-k~gl~s~~e~I~~tie~~~~~~~daR~yL~ 122 (240)
-+.+..++.+....+..+=+-++.+.-. .|+.++.+.+|+. +.+ --+-.+..+.|...++.+..-+..+|.-.
T Consensus 57 H~~lee~~~~~~~~~D~iAERi~~lGg~-p~~t~~e~~~~s~----i~e~~~~~~~~~~~l~~l~~d~~~~~~~~r~~i- 130 (162)
T PRK09448 57 HEMLDGFRTALEDHLDTMAERAVQLGGV-ALGTTQVVASKTP----LKSYPLDIHNVQDHLKALADRYAIVANDVRKAI- 130 (162)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCC-CCCCHHHHHHhCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3455555566666666666666666655 3688888887763 333 22334556666666665544333333322
Q ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 123 ~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.=.++.++..+|-+-+..+||.+
T Consensus 131 ---------~e~~D~~T~dll~~~~~~~eK~~ 153 (162)
T PRK09448 131 ---------DEAGDEDTADIFTAASRDLDKFL 153 (162)
T ss_pred ---------hhcCChhHHHHHHHHHHHHHHHH
Confidence 22347889999999999999875
No 22
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=38.56 E-value=51 Score=31.92 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=57.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHH
Q 026285 39 QALKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYT 106 (240)
Q Consensus 39 ~~~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~t 106 (240)
.-+.|..+-+.|..+++++.+.+- +...++-+.+.++||+.- .|.+.....-+++||.+. ++.+...
T Consensus 57 ~ildGk~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~-~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~ 135 (345)
T PLN02897 57 VVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQ-TYVRNKIKACEETGIKSLLAELPEDCTEGQILSA 135 (345)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHH-HHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHH
Confidence 446788888999999998887753 556777788888888776 899999999999998652 3457778
Q ss_pred HHHhhcC
Q 026285 107 IETRTAG 113 (240)
Q Consensus 107 ie~~~~~ 113 (240)
|+.+-.+
T Consensus 136 I~~lN~D 142 (345)
T PLN02897 136 LRKFNED 142 (345)
T ss_pred HHHHhCC
Confidence 8877555
No 23
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.27 E-value=1.2e+02 Score=28.11 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=53.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|..+-..+..+++++...+- +...+.-|.+.++|| +-..|.......-+++||.+ +++.+...|+
T Consensus 6 l~gk~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~-~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~ 84 (283)
T PRK14192 6 LDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDP-ASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIE 84 (283)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCh-hHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 5677888888888998888765 456778888875555 66789999999999999974 2444666666
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+..+
T Consensus 85 ~Ln~d 89 (283)
T PRK14192 85 ELNAN 89 (283)
T ss_pred HHhCC
Confidence 65544
No 24
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.07 E-value=1e+02 Score=28.99 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=53.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHhh
Q 026285 41 LKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIETRT 111 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~~~ 111 (240)
+.|..+-+.+..++++..+.+ +...++-+.+.++|| |-..|++.....-+++||.+. ++.+..+|+.+-
T Consensus 3 ldGk~iA~~i~~~~k~~v~~l-~~~P~LaiI~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN 80 (287)
T PRK14181 3 LKGAPAAEHILATIKENISAS-STAPGLAVVLIGNDP-ASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLN 80 (287)
T ss_pred eeHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456777788888899888886 778888888876666 567899999999999998652 345667777764
Q ss_pred c
Q 026285 112 A 112 (240)
Q Consensus 112 ~ 112 (240)
.
T Consensus 81 ~ 81 (287)
T PRK14181 81 N 81 (287)
T ss_pred C
Confidence 3
No 25
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.90 E-value=28 Score=32.32 Aligned_cols=33 Identities=18% Similarity=0.507 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCC
Q 026285 144 MDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIR 183 (240)
Q Consensus 144 m~ALdkvEK~igkpL~r~DkkGM~~L~ae~~kinkklGi~ 183 (240)
.+.++++|.++|+|+.+||-.-|-. ..+.+|++
T Consensus 193 ~eii~~lE~~~G~PVvsSN~AT~W~-------~Lr~~g~~ 225 (238)
T COG3473 193 FEIIEKLERDTGVPVVSSNQATLWM-------ALRLIGLR 225 (238)
T ss_pred HHHHHHHHHHhCCceeeccHHHHHH-------HHHHcCCc
Confidence 5789999999999999999765432 34566665
No 26
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=36.72 E-value=82 Score=25.11 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=38.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS 98 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s 98 (240)
+.|..+-+.+..++++....+- +...+.-|...++||++ ..|+.......+++||..
T Consensus 3 L~Gk~va~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S-~~Y~~~k~k~~~~~Gi~~ 61 (117)
T PF00763_consen 3 LDGKPVAKEIKEELKEEIEKLKEKGITPKLAIILVGDDPAS-ISYVRSKQKAAEKLGIEF 61 (117)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHCT---EEEEEEES--HHH-HHHHHHHHHHHHHHT-EE
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhH-HHHHHHHHHHHHHcCCce
Confidence 4677888888888888776654 44677888877666654 579999999999999864
No 27
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=36.29 E-value=1.5e+02 Score=22.52 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhc
Q 026285 45 EMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKA 94 (240)
Q Consensus 45 d~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~ 94 (240)
+-|..+..+...-|+.+++.+.++.=-|..+|+..+..+...+..+-.++
T Consensus 4 ~~L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l 53 (143)
T PF05130_consen 4 EELIELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEEL 53 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 35778888999999999999998887777899999988887777666553
No 28
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.87 E-value=1.1e+02 Score=28.87 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=54.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|..+-..|-.++++..+.+. +...+.-+.+.++|| +-..|.+......+++||.+. ++.+...|+
T Consensus 5 ldGk~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~ 83 (297)
T PRK14186 5 LDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDP-ASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIA 83 (297)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCh-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4677777888888888887764 445667777775555 667899999999999999873 556777887
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 84 ~lN~D 88 (297)
T PRK14186 84 QLNQD 88 (297)
T ss_pred HHhCC
Confidence 77554
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=35.54 E-value=4.4e+02 Score=28.19 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=61.8
Q ss_pred HHHhhccchhHhhhhhhcCCcCCCchhHHH--HHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCC
Q 026285 19 VILQRQHAISVRFFANEAAPQALKGDEMLK--NIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADL 96 (240)
Q Consensus 19 ~~~~~~~~~~vR~fA~~Aap~~~kgdd~lK--~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl 96 (240)
+....|.-...+.+...+..|.-.-.-.+. ......+++|..++..+++. +.++|++|++....+ ..-+..
T Consensus 77 l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka-L~~dP~n~~~l~gLa------~~y~~~ 149 (822)
T PRK14574 77 IAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS-LKKDPTNPDLISGMI------MTQADA 149 (822)
T ss_pred HHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHH------HHHhhc
Confidence 334446666666666654443222333444 34667789999999999988 667999998875322 212222
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 97 FSESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 97 ~s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
...+.....++.+...-|+.+.|+..
T Consensus 150 -~q~~eAl~~l~~l~~~dp~~~~~l~l 175 (822)
T PRK14574 150 -GRGGVVLKQATELAERDPTVQNYMTL 175 (822)
T ss_pred -CCHHHHHHHHHHhcccCcchHHHHHH
Confidence 45556667777778888888888443
No 30
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.06 E-value=1.2e+02 Score=28.59 Aligned_cols=72 Identities=11% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|-.+-+.|..+++++.+.+. +..++.-+.+. ||..|-..|++.....-+++||.+ .++.+...|+
T Consensus 6 ldGk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~v-g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~ 84 (297)
T PRK14168 6 IKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILV-GESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALID 84 (297)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 5677778888888998888865 45677778876 555567889999999999999864 3455667777
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-.+
T Consensus 85 ~lN~D 89 (297)
T PRK14168 85 KYNND 89 (297)
T ss_pred HHhCC
Confidence 76443
No 31
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=35.00 E-value=1.7e+02 Score=25.21 Aligned_cols=65 Identities=18% Similarity=0.419 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCC---CchhhhHHHHHHHHHHHHHhh
Q 026285 79 AVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGL---IDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 79 AV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl---~D~~G~~a~mm~ALdkvEK~i 154 (240)
..+.|+.. -.|.+.-|-++..+.+...++. |-.-+.++|...++ ..+.++-.+|-+.+.++||.+
T Consensus 81 t~~~~~~~-s~ike~~~~~~~~~~l~~l~~~----------~~~l~~~~r~~~~~a~e~gD~~Tadl~~~~~~~~EK~~ 148 (156)
T COG0783 81 TLSEYLKL-SSIKEEPGDYTAREMLKELVED----------YEYLIKELRKGIELADEAGDEVTADLLTDIIRELEKTL 148 (156)
T ss_pred cHHHHHHh-CCCcccCCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHHHHHHH
Confidence 44444432 2344444447888888777665 44445566666666 455678888889999999864
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.90 E-value=5.7e+02 Score=29.73 Aligned_cols=175 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHH-------------HHH-hhcCCCcHHHHH
Q 026285 56 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYT-------------IET-RTAGIPDARTYL 121 (240)
Q Consensus 56 kkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~t-------------ie~-~~~~~~daR~yL 121 (240)
+-.+.++..++++--. ..-||..|...|+.++ ++.||+..+.|+.. +|. +....+|++---
T Consensus 1471 ~el~~Li~~v~~Flt~-~~adp~si~~vA~~vL----~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~ 1545 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQ-PDADPDSIEEVAEEVL----ALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAE 1545 (1758)
T ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH----hccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHH
Q ss_pred HHHHHHHHHcCC-CchhhhHHHHHHHHHHHHHhhCCc------------cccccHhhHHHHHHHHHHHHHHhCCCCCChh
Q 026285 122 LTLKEIRERRGL-IDEHGAEAMMMDALEKVEKEIKKP------------LMRNDKKGMALLTAEFDKINKKLGIRKEDLP 188 (240)
Q Consensus 122 ~~l~EiR~~~Gl-~D~~G~~a~mm~ALdkvEK~igkp------------L~r~DkkGM~~L~ae~~kinkklGi~~eDl~ 188 (240)
+-+++-++.+.- +|..+...++.+||++.++..|.. +...+=.-..--++..++.....+-+-++|.
T Consensus 1546 ~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1546 NLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhhhhhhhccccccc
Q 026285 189 KYEEQLELKIAKAQLE--ELKKDALEAMETQKKREEFKDEEMVEVKSLD 235 (240)
Q Consensus 189 K~eee~el~~aK~~L~--elkk~a~e~m~~~kkree~k~e~~~dvk~Ld 235 (240)
+..|++-.+++++-.+ +.-++|-.+-..+..-++.-+.+.-++...|
T Consensus 1626 ~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~ 1674 (1758)
T KOG0994|consen 1626 TRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVD 1674 (1758)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 33
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=34.25 E-value=88 Score=24.80 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 026285 164 KGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKK 208 (240)
Q Consensus 164 kGM~~L~ae~~kinkklGi~~eDl~K~eee~el~~aK~~L~elkk 208 (240)
.||..|..+++.+...+--- +|+-||.+|.+|..
T Consensus 60 ~Gl~~li~~id~a~~~~~~G-----------~l~~AK~~l~~l~~ 93 (103)
T PF07361_consen 60 EGLDKLIDQIDKAEALAEAG-----------KLDEAKAALKKLDD 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHH
No 34
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.98 E-value=1.6e+02 Score=27.64 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF---------SESQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~---------s~~e~I~~tie~ 109 (240)
+.|..+-..|..+++++.+.+- +..++.-+.+.++|| |-..|.+......+++||. +.++.+...|+.
T Consensus 4 l~Gk~~a~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~ 82 (282)
T PRK14166 4 LDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNP-ASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINT 82 (282)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566777888888888877743 456677777775555 5678999999999999986 234557778877
Q ss_pred hhc
Q 026285 110 RTA 112 (240)
Q Consensus 110 ~~~ 112 (240)
+-.
T Consensus 83 lN~ 85 (282)
T PRK14166 83 LNH 85 (282)
T ss_pred HhC
Confidence 643
No 35
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=33.83 E-value=3.9e+02 Score=24.78 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=50.3
Q ss_pred cCCCChHHHHHHHHHHhhc--CCCcHHHH----------HHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHh--------
Q 026285 94 ADLFSESQRIAYTIETRTA--GIPDARTY----------LLTLKEIRERRGLIDEHGAEAMMMDALEKVEKE-------- 153 (240)
Q Consensus 94 ~gl~s~~e~I~~tie~~~~--~~~daR~y----------L~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~-------- 153 (240)
+|||+++|.+...-.+.+. .-++...| ++.+-+-=...+++|.. +....-..|+...+.
T Consensus 118 lGLP~~del~~~~~~y~~~rg~y~~~e~f~w~s~v~YwlvtdLy~~~r~~~lt~~e-Lrk~a~~~L~~makRi~sGE~IP 196 (233)
T PF06992_consen 118 LGLPSVDELYQRYKRYCRYRGFYPSIEEFPWRSNVEYWLVTDLYRRMRQRQLTDEE-LRKRAKKELKAMAKRIASGEPIP 196 (233)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCChhhCCCcchhHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHCCCcCC
Confidence 7899998888877777432 22444333 33444434456676654 222334444444443
Q ss_pred ---------hCCccccccHhhHHHHHHHHHHHHHHhCCCC
Q 026285 154 ---------IKKPLMRNDKKGMALLTAEFDKINKKLGIRK 184 (240)
Q Consensus 154 ---------igkpL~r~DkkGM~~L~ae~~kinkklGi~~ 184 (240)
.+.|+ ++++|+ +.+++|-.++|++.
T Consensus 197 ePv~qLp~~~~~P~--s~e~~l----~~iA~lr~k~glk~ 230 (233)
T PF06992_consen 197 EPVKQLPKLHSIPV--SREKAL----EIIAELRAKFGLKG 230 (233)
T ss_pred cHHHHhhhhcCCCC--CHHHHH----HHHHHHHHHhCCCc
Confidence 34555 778887 55788999999974
No 36
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=33.42 E-value=1.5e+02 Score=23.35 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHh---cCCCChHHHH
Q 026285 45 EMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREK---ADLFSESQRI 103 (240)
Q Consensus 45 d~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k---~gl~s~~e~I 103 (240)
+.|+.-|-+-..-.+++++.|.+.+. +..+|+.++..+...+..+... +|.+..+..+
T Consensus 61 ~~L~~~yg~~~~i~~~~~~~l~~l~~-~~~~d~~~L~~~~~~v~~~i~~L~~lg~~~~~~~l 121 (145)
T PF03564_consen 61 ELLEERYGNPRRIIQALLEELRNLPP-ISNDDPEALRSLVDKVNNCIRALKALGVNVDDPLL 121 (145)
T ss_pred HHHHHHhCCchHHHHHHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 57788888877778899999998775 4679999999999888776544 5665554433
No 37
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.10 E-value=1.6e+02 Score=27.58 Aligned_cols=71 Identities=14% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF---------SESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~---------s~~e~I~~tie 108 (240)
+.|..+-..+..++++..+.+- +...+.-|.+.++|| |-..|++.....-+++||. ..++.+...|+
T Consensus 6 ldGk~va~~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~ 84 (285)
T PRK10792 6 IDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDP-ASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALID 84 (285)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 6788888899999998888753 334677777776666 5678999999999999987 23455667777
Q ss_pred Hhhc
Q 026285 109 TRTA 112 (240)
Q Consensus 109 ~~~~ 112 (240)
.+-+
T Consensus 85 ~lN~ 88 (285)
T PRK10792 85 ELNA 88 (285)
T ss_pred HHhC
Confidence 7644
No 38
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=32.87 E-value=63 Score=26.66 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHH
Q 026285 56 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQR 102 (240)
Q Consensus 56 kkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~ 102 (240)
+.|-+++-.|-..|.-. ++...--..|-+..+-.++++||+++++.
T Consensus 56 ND~alAVR~lE~vK~K~-~~~~~~y~~~lqeikp~l~ELGI~t~EeL 101 (103)
T cd00923 56 NDFALAVRILEAIKDKC-GAHKEIYPYILQEIKPTLKELGISTPEEL 101 (103)
T ss_pred hhHHHHHHHHHHHHHHc-cCchhhHHHHHHHHhHHHHHHCCCCHHHh
Confidence 67888888887777664 33444556677888889999999999873
No 39
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=32.66 E-value=57 Score=33.81 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHcCCC
Q 026285 74 PEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAG---IPDARTYLLTLKEIRERRGLI 134 (240)
Q Consensus 74 p~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~---~~daR~yL~~l~EiR~~~Gl~ 134 (240)
+|+|.+.-..---|..+.++|||.+.+-|+.+++.+.--+ ..+.+.|...+.+..+++|..
T Consensus 348 ~g~~~~~~a~E~~~d~lA~~Lgidp~eiR~~n~~~~g~~~~~~~~~~~~~~~~~~~~ak~~~~~ 411 (731)
T COG1529 348 AGRPEGTFALERAVDELAEELGIDPVEIRLRNLIRGGPFGLGRRYDSGDYLEELDEAAKRFGWS 411 (731)
T ss_pred CCCchhHHHHHHHHHHHHHHhCCCHHHHhhhhccccCCCCCcccccCccHHHHHHHHHHhcCcc
Confidence 5788777777778899999999999999999999965444 888899999999999988853
No 40
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=32.48 E-value=1.6e+02 Score=28.78 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHH
Q 026285 40 ALKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTI 107 (240)
Q Consensus 40 ~~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~ti 107 (240)
-+.|..+-+.|..+++++...+- +...++-|.+.++|| |-..|.+.....-+++||.+ .++.+...|
T Consensus 75 ildGk~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dp-aS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I 153 (364)
T PLN02616 75 VIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRK-DSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFI 153 (364)
T ss_pred EeEhHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 48899999999999999988865 456778888875665 56789999999999999962 234566777
Q ss_pred HHhhc
Q 026285 108 ETRTA 112 (240)
Q Consensus 108 e~~~~ 112 (240)
+.+-+
T Consensus 154 ~~LN~ 158 (364)
T PLN02616 154 SGFNN 158 (364)
T ss_pred HHHcC
Confidence 76644
No 41
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.18 E-value=72 Score=29.90 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=53.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~ 109 (240)
+.|..+-..|..+++++.+.+- +...+.-+.+.++|| +-..|.+.....-+++||.+ .++.+...|+.
T Consensus 6 ldGk~va~~i~~~lk~~i~~l~~~g~~p~Laii~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 84 (285)
T PRK14189 6 IDGNALSKQLRAEAAQRAAALTARGHQPGLAVILVGDNP-ASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDE 84 (285)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCc-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678888889999998888754 345667677775555 67889999999999999864 24667777877
Q ss_pred hhc
Q 026285 110 RTA 112 (240)
Q Consensus 110 ~~~ 112 (240)
+-.
T Consensus 85 lN~ 87 (285)
T PRK14189 85 LNR 87 (285)
T ss_pred HcC
Confidence 654
No 42
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.20 E-value=1.4e+02 Score=28.10 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|..+-+.|-.+++++.+.+- +..+++-|.+.++|| |-..|.+.....-+++||.+ .++.+..+|+
T Consensus 5 ldGk~va~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~ 83 (294)
T PRK14187 5 IDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDP-ASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKIN 83 (294)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4677777888888888888765 456777788775555 66789999999999999865 3456777787
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 84 ~lN~d 88 (294)
T PRK14187 84 ELNND 88 (294)
T ss_pred HHhCC
Confidence 76543
No 43
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.86 E-value=1.6e+02 Score=27.64 Aligned_cols=72 Identities=19% Similarity=0.342 Sum_probs=53.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|..+-+.|-.++++..+.+- +...++-|.+.++|| |-..|.+......+++||.+ .++.+..+|+
T Consensus 4 ldGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~ 82 (281)
T PRK14183 4 LDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDP-ASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIA 82 (281)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567777888888888877764 346677777775555 66789999999999999974 3455778888
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 83 ~lN~D 87 (281)
T PRK14183 83 MMNNN 87 (281)
T ss_pred HHhCC
Confidence 76543
No 44
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.80 E-value=1.5e+02 Score=27.71 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=52.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhh-hccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVL-RKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~l-kk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|..+-+.+..+++++.+.+- +.. .+.-+.+.++|| |-..|........+++||.+. ++.+..+|+
T Consensus 5 ldGk~iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~ 83 (278)
T PRK14172 5 INGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDG-GSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIE 83 (278)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4677778888888888877754 222 566677775665 567899999999999998763 456778888
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 84 ~lN~d 88 (278)
T PRK14172 84 ELNKD 88 (278)
T ss_pred HHhCC
Confidence 77543
No 45
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=30.72 E-value=4.1e+02 Score=24.12 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCC----CchhhhHHHHHHHHH
Q 026285 73 APEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGL----IDEHGAEAMMMDALE 148 (240)
Q Consensus 73 dp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl----~D~~G~~a~mm~ALd 148 (240)
.++||..+.+.|+......+..+. ...++-++.++...-.....+..+-..-++ --..|.-.+|..|=+
T Consensus 82 ~~~dp~~~r~dA~~l~~~a~~~s~-------~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LLe~a~~ 154 (206)
T PLN03060 82 LGEDPDQYRKDAKKLEEWASSQSA-------SGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLLECAKA 154 (206)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHcCC
Confidence 369999999999988887764432 222222333332222222333332211121 123466665554411
Q ss_pred HHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026285 149 KVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKRE 221 (240)
Q Consensus 149 kvEK~igkpL~r~DkkGM~~L~ae~~kinkklGi~~eDl~K~eee~el~~aK~~L~elkk~a~e~m~~~kkre 221 (240)
+|.+ .+.+|.+.+|+.. -+-+-+|++|++-|+.|. +|.|.|+-...+|
T Consensus 155 ------------~d~~-------~l~~l~~~L~ls~-----~kv~kDL~lYrsnLeKm~-qa~el~ee~~~~e 202 (206)
T PLN03060 155 ------------SDPA-------VLEKLSKALNVSK-----RSVDRDLDVYRNLLSKLA-QAKELIKEYIDRS 202 (206)
T ss_pred ------------CCHH-------HHHHHHHHcCCCH-----HHHHhhHHHHHhHHHHHH-HHHHHHHHHHHHH
Confidence 0332 6788889999983 344568889999999985 5777776655443
No 46
>PF11827 DUF3347: Protein of unknown function (DUF3347); InterPro: IPR021782 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 169 to 570 amino acids in length.
Probab=30.30 E-value=1.3e+02 Score=25.75 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhc-----CCCcHHHHHHHHHH
Q 026285 73 APEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTA-----GIPDARTYLLTLKE 126 (240)
Q Consensus 73 dp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~-----~~~daR~yL~~l~E 126 (240)
..+|.+++++.|..+.+....++...........+..... ++...|..+..|++
T Consensus 61 v~dd~~~a~~aA~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~~qR~~F~~lS~ 119 (174)
T PF11827_consen 61 VADDLKAAKAAAKALLAALKAVDMAELSASLAKALMEAAEDAKEHDIEHQREAFESLSE 119 (174)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHH
Confidence 4699999999999999999999988555444444444332 77788888888877
No 47
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.93 E-value=75 Score=27.28 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=31.7
Q ss_pred hhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCC
Q 026285 65 LRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIP 115 (240)
Q Consensus 65 lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~ 115 (240)
|+-+--. ++-|+++|++-++.+-++|.++. +++++.-++...+++|
T Consensus 77 LnALl~~-~~pD~~kI~aL~kEI~~Lr~kL~----e~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 77 YNALLTA-NPPDSSKINAVAKEMENLRQSLD----ELRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCC
Confidence 3334333 56788889999999999988774 6677666666555444
No 48
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=29.71 E-value=84 Score=24.44 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 026285 78 AAVSQYANVMKTVREKADLF 97 (240)
Q Consensus 78 aAV~~YA~~~~~ir~k~gl~ 97 (240)
+|+..|......+++++|+.
T Consensus 114 ~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 114 EALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 45666777777777777773
No 49
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=29.34 E-value=1.5e+02 Score=27.47 Aligned_cols=59 Identities=31% Similarity=0.374 Sum_probs=42.6
Q ss_pred cccccHhhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026285 158 LMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREE 222 (240)
Q Consensus 158 L~r~DkkGM~~L~ae~~kinkklGi~~eDl~K~eee~el~~aK~~L~elkk~a~e~m~~~kkree 222 (240)
..+-|-.+-+.+ ++.+|+-+|+. =|-+++++|++ +.+.||++|-++..+.++.+++..+
T Consensus 181 ~~~PDP~AAa~v---ve~lnk~~~l~-V~td~L~keAe--~i~~~lekl~eq~~~~~~~~~~~~e 239 (244)
T COG1938 181 GDRPDPRAAARV---VEALNKMLGLN-VDTDKLEKEAE--EIEEQLEKLAEQLEKEEERVEREEE 239 (244)
T ss_pred CCCCChHHHHHH---HHHHHHHhcCc-cCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcccc
Confidence 344477766655 45888888887 46788888774 6788888888888888877765543
No 50
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.21 E-value=90 Score=29.23 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=54.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~ 109 (240)
+.|..+-+.+..+++++.+.+- +...+.-+.+.++|| |-..|.+......+++||.+. ++.+..+|+.
T Consensus 6 l~Gk~ia~~i~~~~~~~v~~l~~~g~~p~Laii~vg~~~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 84 (286)
T PRK14175 6 LDGKQIAKDYRQGLQDQVEALKEKGFTPKLSVILVGNDG-ASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNR 84 (286)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677788889899998887754 456777777775665 567899999999999998652 4567788887
Q ss_pred hhcC
Q 026285 110 RTAG 113 (240)
Q Consensus 110 ~~~~ 113 (240)
+-++
T Consensus 85 lN~d 88 (286)
T PRK14175 85 LNND 88 (286)
T ss_pred HhCC
Confidence 7543
No 51
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=28.97 E-value=81 Score=29.81 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=55.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHH
Q 026285 40 ALKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTI 107 (240)
Q Consensus 40 ~~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~ti 107 (240)
-+.|-.+-+.|..+++++.+.+. +...++-|.+.++|| |-..|........+++||.+ .++.+...|
T Consensus 11 ildGk~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I 89 (299)
T PLN02516 11 IIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRK-DSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKV 89 (299)
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 47788899999999999988876 446677777765555 66789999999999999863 245567778
Q ss_pred HHhhcC
Q 026285 108 ETRTAG 113 (240)
Q Consensus 108 e~~~~~ 113 (240)
+.+-.+
T Consensus 90 ~~lN~D 95 (299)
T PLN02516 90 HELNAN 95 (299)
T ss_pred HHHhCC
Confidence 877555
No 52
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.88 E-value=1.5e+02 Score=27.87 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|-.+-+.|..++++....+- +...+.-+.+.++|| |-..|.+.....-+++||.+. ++.+..+|+
T Consensus 4 ldGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~ 82 (286)
T PRK14184 4 LDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDP-ASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIA 82 (286)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4577777888888888887764 456777788876666 556799999999999998653 455777777
Q ss_pred Hhhc
Q 026285 109 TRTA 112 (240)
Q Consensus 109 ~~~~ 112 (240)
.+-+
T Consensus 83 ~lN~ 86 (286)
T PRK14184 83 ELNA 86 (286)
T ss_pred HHhC
Confidence 7654
No 53
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.70 E-value=1.9e+02 Score=27.32 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=52.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|-.+-+.|..++++....+- +...++-+.+.++|| |-..|.+......+++||.+ .++.+..+|+
T Consensus 4 ldGk~iA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~ 82 (293)
T PRK14185 4 IDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDG-GSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVR 82 (293)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567777888888888877754 456777788775555 56789999999999999754 2456777777
Q ss_pred Hhhc
Q 026285 109 TRTA 112 (240)
Q Consensus 109 ~~~~ 112 (240)
.+-+
T Consensus 83 ~lN~ 86 (293)
T PRK14185 83 ELNQ 86 (293)
T ss_pred HHhC
Confidence 7654
No 54
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.54 E-value=2.1e+02 Score=26.84 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~ 109 (240)
+.|-.+-+.|..+++++.+.+- +...++-|.+.++| .|-..|.+......+++||.+ .++.+..+|+.
T Consensus 6 l~Gk~va~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d-~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~ 84 (284)
T PRK14193 6 LDGKATADEIKADLAERVAALKEKGITPGLGTVLVGDD-PGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDE 84 (284)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677777888888888877643 34456666666455 467889999999999999863 35567788887
Q ss_pred hhcC
Q 026285 110 RTAG 113 (240)
Q Consensus 110 ~~~~ 113 (240)
+-++
T Consensus 85 lN~D 88 (284)
T PRK14193 85 LNAD 88 (284)
T ss_pred HhCC
Confidence 7554
No 55
>PRK05883 acyl carrier protein; Validated
Probab=28.51 E-value=1.2e+02 Score=23.34 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhHHHH-HHHHHHHHH
Q 026285 74 PEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMM-MDALEKVEK 152 (240)
Q Consensus 74 p~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~a~m-m~ALdkvEK 152 (240)
|.|+++| |.+.+.-+++.+|+++.. |.-...+.++.|...+- ++.+-.+|.
T Consensus 9 ~~~~~~I--~~~l~~iia~~l~v~~~~--------------------------I~~d~~l~~dlg~DSL~~v~lv~~lE~ 60 (91)
T PRK05883 9 TSSPSTV--SATLLSILRDDLNVDLTR--------------------------VTPDARLVDDVGLDSVAFAVGMVAIEE 60 (91)
T ss_pred CCCHHHH--HHHHHHHHHHHhCCChhh--------------------------CCCCCchhhccCCChHHHHHHHHHHHH
Confidence 4556665 566666666666665421 22233455666666665 677778999
Q ss_pred hhCCccccccHhhHHHHHHHHHHHHHHh
Q 026285 153 EIKKPLMRNDKKGMALLTAEFDKINKKL 180 (240)
Q Consensus 153 ~igkpL~r~DkkGM~~L~ae~~kinkkl 180 (240)
..|-.+--.+-.+|.+...=++-|..+.
T Consensus 61 ~fgI~i~~ee~~~~~TV~dl~~~v~~~~ 88 (91)
T PRK05883 61 RLGVALSEEDLLSCDTVGDLEAAIAAKV 88 (91)
T ss_pred HHCCCcCHHHHHhCCCHHHHHHHHHHHc
Confidence 9999888888888877777777666553
No 56
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=28.20 E-value=51 Score=23.21 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhCCC
Q 026285 167 ALLTAEFDKINKKLGIR 183 (240)
Q Consensus 167 ~~L~ae~~kinkklGi~ 183 (240)
..|+..+|+||.++|-.
T Consensus 2 ~~LM~~iD~iN~r~G~~ 18 (52)
T PF13438_consen 2 QRLMQAIDAINRRFGRG 18 (52)
T ss_pred hHHHHHHHHHHHhcCCC
Confidence 35888999999999854
No 57
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=27.28 E-value=21 Score=33.53 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=24.1
Q ss_pred HHHHcCCCchhhhHHHHHHHHHHHHH
Q 026285 127 IRERRGLIDEHGAEAMMMDALEKVEK 152 (240)
Q Consensus 127 iR~~~Gl~D~~G~~a~mm~ALdkvEK 152 (240)
||-+.||+|.+..-+-+.+||+++||
T Consensus 360 iR~svGlE~~~dl~~dl~~al~~~~~ 385 (386)
T PRK08045 360 LRISTGIEDGEDLIADLENGFRAANK 385 (386)
T ss_pred EEEEeCcCCHHHHHHHHHHHHHHhhc
Confidence 67889999999999999999999987
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.09 E-value=85 Score=26.29 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCC--CHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 026285 48 KNIFLDVKKKFETALGVLRKEKITIAPE--DPAAVSQYANVMKTVREKADLFSESQRIAYTIET 109 (240)
Q Consensus 48 K~iF~~vqkkF~~~l~~lkk~ki~idp~--DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~ 109 (240)
-..+.++++++..--..++=..|++||+ .|+..++|++..-. .-.|+-...+.|....+.
T Consensus 72 l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~~--~~~~ltg~~~~i~~l~~~ 133 (174)
T PF02630_consen 72 LANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFGP--DFIGLTGSREEIEELAKQ 133 (174)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHTT--TCEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcCC--CcceeEeCHHHHHHHHHH
Confidence 3445666666665533456667999996 59999999987531 123343445556555554
No 59
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.71 E-value=96 Score=29.04 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=54.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|-.+-+.+..+++++...+- +...+.-|.+.++|| |-..|.+......+++||.+. ++.+..+|+
T Consensus 5 ldGk~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~ 83 (284)
T PRK14179 5 IDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNP-ASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIE 83 (284)
T ss_pred EEhHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4577778888899999988865 346677778776666 567899999999999998652 456777888
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 84 ~lN~d 88 (284)
T PRK14179 84 RYNQD 88 (284)
T ss_pred HHhCC
Confidence 77554
No 60
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.48 E-value=85 Score=29.53 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=54.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|..+-+.|-.+++++.+.+. +...++-+.+.++|| |-..|++.....-+++||.+ .++.+..+|+
T Consensus 11 ldGk~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~-aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 89 (287)
T PRK14176 11 IDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDP-ASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELID 89 (287)
T ss_pred EEhHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEECCCc-chHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 5677888888889999888765 446677778776666 56789999999999999854 2456777787
Q ss_pred Hhhc
Q 026285 109 TRTA 112 (240)
Q Consensus 109 ~~~~ 112 (240)
.+-+
T Consensus 90 ~LN~ 93 (287)
T PRK14176 90 SLNK 93 (287)
T ss_pred HHhC
Confidence 7654
No 61
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=26.30 E-value=1.7e+02 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=24.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHHH
Q 026285 70 ITIAPEDPAAVSQYANVMKTVREK------------ADLFSESQRIAY 105 (240)
Q Consensus 70 i~idp~DpaAV~~YA~~~~~ir~k------------~gl~s~~e~I~~ 105 (240)
|.=+|=||++|..+++.+.+...+ ..+.+|+|+-+.
T Consensus 98 l~a~~FDeaavral~~~~~~~~~e~~v~~~~~~~~~~~vLTpEQRak~ 145 (170)
T PRK12750 98 VLADDFDEAAANDLAKQMVEKQVERRVKMLEKRHQMLSILTPEQKAKF 145 (170)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344788999999997665544222 567777777554
No 62
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=26.29 E-value=4.3e+02 Score=24.25 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=17.1
Q ss_pred ccccHhhHHHHHHHHHHHHHHhCC
Q 026285 159 MRNDKKGMALLTAEFDKINKKLGI 182 (240)
Q Consensus 159 ~r~DkkGM~~L~ae~~kinkklGi 182 (240)
...|=.+.+-....|+++..++..
T Consensus 100 ~kedL~~~Ke~KK~FdK~Se~~d~ 123 (215)
T cd07631 100 KERDLKEILTLKEVFQIASNDHDA 123 (215)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456667788888888887766543
No 63
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.56 E-value=6e+02 Score=24.34 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=44.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHH----HHHHHHHHcCCCchhh
Q 026285 69 KITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLL----TLKEIRERRGLIDEHG 138 (240)
Q Consensus 69 ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~----~l~EiR~~~Gl~D~~G 138 (240)
.|.....||.-....+|.+-++=-+-.+-.-.+....+.+.+.+..+.+++=|. .+..+|.+.|+.+.++
T Consensus 125 ~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~ 198 (498)
T TIGR03007 125 TISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQ 198 (498)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 445566788888888877665444433333444455566666666666666665 5577888888865444
No 64
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.47 E-value=1.2e+02 Score=28.65 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~ 109 (240)
+.|..+-+.+..+++++...+- +...+.-+.+.++|| |-..|.+.....-+++||.+. ++.+..+|+.
T Consensus 5 l~Gk~vA~~i~~~l~~~v~~l~~~g~~P~LaiI~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 83 (297)
T PRK14167 5 IDGNAVAAQIRDDLTDAIETLEDAGVTPGLATVLMSDDP-ASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDE 83 (297)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577777888888888777643 445667777775666 667899999999999998652 3456777777
Q ss_pred hhc
Q 026285 110 RTA 112 (240)
Q Consensus 110 ~~~ 112 (240)
+-+
T Consensus 84 lN~ 86 (297)
T PRK14167 84 LNA 86 (297)
T ss_pred HhC
Confidence 644
No 65
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.94 E-value=1.1e+02 Score=28.68 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=52.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|-.+-..|..+++++.+.+- +...+.-+.+. ||..|-..|.+......+++||.+. ++.+..+|+
T Consensus 4 l~Gk~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~v-g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~ 82 (285)
T PRK14191 4 LDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILV-GKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIK 82 (285)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 3566677788888888888765 45677777776 4455678899999999999998642 455667777
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 83 ~lN~D 87 (285)
T PRK14191 83 DLNTD 87 (285)
T ss_pred HHhCC
Confidence 76553
No 66
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.77 E-value=2.5e+02 Score=26.40 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|..+-+.|-.+++++.+.+- +...++-+.+.++|| +-..|.+......+++||.+ .++.+..+|+
T Consensus 5 l~Gk~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~-~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~ 83 (296)
T PRK14188 5 IDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDP-ASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIA 83 (296)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4566777888888888877754 446777777775555 66789999999999999963 3445667888
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 84 ~lN~d 88 (296)
T PRK14188 84 RLNAD 88 (296)
T ss_pred HHhCC
Confidence 77555
No 67
>PF10123 Mu-like_Pro: Mu-like prophage I protein; InterPro: IPR012106 This entry is represented by the Bacteriophage Mu, Gp32. The characteristics of the protein distribution suggest prophage matches.
Probab=24.69 E-value=89 Score=28.99 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhhCCc
Q 026285 78 AAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKP 157 (240)
Q Consensus 78 aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~igkp 157 (240)
+.+..-.....+++.+..=-..++.|..-|...+- .|.-|.|+..+.. .|..+.++ ++++.-.|=--.+..
T Consensus 220 ~~~~al~~qlaaL~~~~~~~~~e~lV~~Ai~~Gki-~Pa~r~~~~~l~~-------~d~~a~~~-~l~~~p~iaa~~~~~ 290 (326)
T PF10123_consen 220 ATVNALQAQLAALKAQLAEAEAEALVDAAIKDGKI-TPAQRDWARALAK-------QDPAAFKA-FLAAAPPIAALSGLQ 290 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHh-------cCHHHHHH-HHHhCCccccCcccc
Q ss_pred c----ccccHhhHHHHHHHHHHHHHHhCCCCCChhh
Q 026285 158 L----MRNDKKGMALLTAEFDKINKKLGIRKEDLPK 189 (240)
Q Consensus 158 L----~r~DkkGM~~L~ae~~kinkklGi~~eDl~K 189 (240)
. -.....+-..|.++=-.+.+.+||++||+.|
T Consensus 291 ~~~~~~~~~~~~~~~Lt~ee~av~~~lGis~edf~K 326 (326)
T PF10123_consen 291 TGGAKPPGPADGSAALTAEELAVCRQLGISPEDFAK 326 (326)
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHcCCCHHHhcC
No 68
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=24.42 E-value=1.7e+02 Score=27.72 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=50.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh---hhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETALG---VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~---~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|..+-..+..+++++...+-. ...++-+.+.++|| |-.-|.......-+++|+.|. ++.+...|+
T Consensus 3 idGk~lA~~i~~~lk~~v~~~~~~~~~~P~Lavilvgddp-aS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~ 81 (283)
T COG0190 3 IDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDP-ASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALID 81 (283)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCH-HHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHH
Confidence 45666777777888877776543 46788888998888 667899999899999996553 455555666
Q ss_pred Hhh
Q 026285 109 TRT 111 (240)
Q Consensus 109 ~~~ 111 (240)
.+-
T Consensus 82 ~lN 84 (283)
T COG0190 82 ELN 84 (283)
T ss_pred Hhc
Confidence 553
No 69
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=23.59 E-value=3.2e+02 Score=24.94 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCC----CchhhhHHHHHHHHH
Q 026285 73 APEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGL----IDEHGAEAMMMDALE 148 (240)
Q Consensus 73 dp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl----~D~~G~~a~mm~ALd 148 (240)
.+.||..+.+.|+......+.. |.++.+.- +. +.+.+.-..+ ++.-|=..-.+ --..|.-.+|..|
T Consensus 84 ~~~dp~~~r~dA~~l~~~a~~~---s~~~i~~~-l~---~~~~~~~~~l-~l~~ia~n~~f~YSRl~AIGL~~LLe~a-- 153 (214)
T TIGR03060 84 NGFDPEQLREDAKQLLEQAKGK---GLDEILSW-LT---QANLSNGGGD-TLQGIAGRHKFKYSRLFAIGLYSLLEEA-- 153 (214)
T ss_pred cCCCHHHHHHHHHHHHHHHhcC---CHHHHHHH-Hh---ccccCCcchh-HHHHHhcCCCcchHHHHHHHHHHHHHhc--
Confidence 3699999999999887776644 33332222 22 2222222222 33332111111 1124555544332
Q ss_pred HHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026285 149 KVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKR 220 (240)
Q Consensus 149 kvEK~igkpL~r~DkkGM~~L~ae~~kinkklGi~~eDl~K~eee~el~~aK~~L~elkk~a~e~m~~~kkr 220 (240)
.|-+..|+. .+...+.+|.+.+|+.. -+-+-+|++|++-|+.|. +|+|.|+-...+
T Consensus 154 -------~~~~~~d~~---~~~~~l~~l~~~L~ls~-----~kv~KDL~lYrsnLeKm~-Qa~el~ee~~~~ 209 (214)
T TIGR03060 154 -------APDKDIDEE---DLNEILKELSEALGLSY-----DRVEKDLDLYKSNLEKMK-QALELMEETLEA 209 (214)
T ss_pred -------CcccccCHH---HHHHHHHHHHHHcCCCH-----HHHHhhHHHHHhHHHHHH-HHHHHHHHHHHH
Confidence 222233333 24556788899999983 344567889999999985 577777665444
No 70
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.16 E-value=1.2e+02 Score=28.42 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=52.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHhh
Q 026285 41 LKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIETRT 111 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~~~ 111 (240)
+.|..+-+.|..+++++...+ ....+.-+.+.++|| |-..|.+.....-+++||.+. ++.+...|+.+-
T Consensus 6 l~Gk~vA~~i~~~l~~~v~~l-~~~P~Laii~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 83 (287)
T PRK14173 6 LSGPPAAEAVYAELRARLAKL-PFVPHLRVVRLGEDP-ASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLN 83 (287)
T ss_pred eeHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEeCCCH-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567788888999999888875 455677777775555 567899999999999998652 445667777654
Q ss_pred c
Q 026285 112 A 112 (240)
Q Consensus 112 ~ 112 (240)
.
T Consensus 84 ~ 84 (287)
T PRK14173 84 A 84 (287)
T ss_pred C
Confidence 4
No 71
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.08 E-value=1.3e+02 Score=28.40 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|..+-+.+-.++++..+.+- +...+.-+.+.++|| +-..|.+.....-+++||.+. ++.+..+|+
T Consensus 4 l~Gk~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~-as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 82 (295)
T PRK14174 4 IDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDP-ASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIE 82 (295)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCCh-HHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 3566777788888888877755 456777788876666 567899999999999998652 445677777
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-.+
T Consensus 83 ~lN~D 87 (295)
T PRK14174 83 DLNND 87 (295)
T ss_pred HHhCC
Confidence 76544
No 72
>PLN02469 hydroxyacylglutathione hydrolase
Probab=23.05 E-value=1.7e+02 Score=26.25 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=31.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH---hhcCCCcHHHHH
Q 026285 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIET---RTAGIPDARTYL 121 (240)
Q Consensus 71 ~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~---~~~~~~daR~yL 121 (240)
.|+|++++ +.+|.+.....|.+ |.|+.---|.....+ ++++.++++..+
T Consensus 186 ~vep~n~~-~~~~~~~~~~~~~~-~~~t~pstl~~E~~~Npflr~~~~~~~~~~ 237 (258)
T PLN02469 186 TVEPDNEK-LKQKLEWAEKQRQA-GLPTVPSTIEEELETNPFMRVDLPEIQEKV 237 (258)
T ss_pred hhCCCCHH-HHHHHHHHHHHHHC-CCCcCCccHHHHHhhCCeecCCCHHHHHHh
Confidence 56787765 66666666665554 777665555555555 677777777665
No 73
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.34 E-value=1.4e+02 Score=27.99 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~ 109 (240)
+.|..+-+.+-.++++..+.+- +...+.-+.+.++|| |-..|.+.....-+++||.+. ++.+...|+.
T Consensus 4 l~Gk~va~~i~~~l~~~v~~l~~~g~~P~Laii~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~ 82 (282)
T PRK14169 4 LDGRAVSKKILADLKQTVAKLAQQDVTPTLAVVLVGSDP-ASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAE 82 (282)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCh-hHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566777888888888877754 455667777775555 667899999999999998653 3456677777
Q ss_pred hhc
Q 026285 110 RTA 112 (240)
Q Consensus 110 ~~~ 112 (240)
+-.
T Consensus 83 lN~ 85 (282)
T PRK14169 83 LNH 85 (282)
T ss_pred HhC
Confidence 654
No 74
>PRK13266 Thf1-like protein; Reviewed
Probab=22.12 E-value=3.6e+02 Score=24.78 Aligned_cols=121 Identities=23% Similarity=0.358 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCC----CchhhhHHHHHHHHH
Q 026285 73 APEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGL----IDEHGAEAMMMDALE 148 (240)
Q Consensus 73 dp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl----~D~~G~~a~mm~ALd 148 (240)
.+.||..+.+.|+......+..+ ..+ |...+.......++. .+.++..|=..-.+ --..|.-.+|..|
T Consensus 84 ~~~dp~~~r~dA~~l~~~a~~~s---~~~-i~~~l~~~~~~~~~~--l~~~l~~ia~~~~f~YSRl~AIGL~~LLe~a-- 155 (225)
T PRK13266 84 VGFDPEQLRQDAERLLELAKGKS---LKE-ILSWLTQKALGEPGG--LLATLLAIANNSKFKYSRLFAIGLYTLLEEA-- 155 (225)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCC---HHH-HHHHHhccccccchh--HHHHHHHHhcCCCCchHHHHHHHHHHHHHhc--
Confidence 36999999999998877766443 222 222222222222222 44444443211111 1123544443322
Q ss_pred HHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026285 149 KVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQ 217 (240)
Q Consensus 149 kvEK~igkpL~r~DkkGM~~L~ae~~kinkklGi~~eDl~K~eee~el~~aK~~L~elkk~a~e~m~~~ 217 (240)
.|.+..|+. .+...+.+|.+.+|+.++ +-+-+|++|++-|+.|. +|.|.|+-.
T Consensus 156 -------~~~~~~d~~---~~~~~l~~l~~~L~ls~~-----kv~KDL~lYrsnLeKm~-Qa~el~ee~ 208 (225)
T PRK13266 156 -------QPDLVKDEE---KLNEALKDISEGLGLSKE-----KVEKDLDLYRSNLEKME-QALELIEET 208 (225)
T ss_pred -------CcccccCHH---HHHHHHHHHHHHcCCCHH-----HHHhhHHHHHhHHHHHH-HHHHHHHHH
Confidence 234444443 345567888999999833 44557889999998885 455555543
No 75
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=21.86 E-value=1.7e+02 Score=23.91 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=36.9
Q ss_pred hhHhhhhhhcCCcCCCchhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC
Q 026285 27 ISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF 97 (240)
Q Consensus 27 ~~vR~fA~~Aap~~~kgdd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~ 97 (240)
.+.|+++-.| +...+..|.+..+|.+-=+.|.+.... ..-++ +| -+|+--+.|...+..+.+..|.-
T Consensus 18 ~~~Rni~~sa-~~~~k~~DPIQklFldKIREY~~Ksks-~gGkl-VD-~~Pe~~kel~eel~kL~r~YG~g 84 (99)
T PF05511_consen 18 HLRRNIGTSA-VAFNKALDPIQKLFLDKIREYNQKSKS-SGGKL-VD-AGPEYEKELNEELEKLARQYGGG 84 (99)
T ss_dssp ----------------S--TTTHHHHHHHHHHHHHHTT-TSS-S-TT---THHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhhhH-HHHhcccChHHHHHHHHHHHHHHHhcc-CCCCC-CC-CCHHHHHHHHHHHHHHHHHhCCc
Confidence 3566666553 322278899999999988888776654 22233 34 57999999999999998887765
No 76
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.60 E-value=5.2e+02 Score=22.21 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=13.7
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHc
Q 026285 107 IETRTAGIPDARTYLLTLKEIRERR 131 (240)
Q Consensus 107 ie~~~~~~~daR~yL~~l~EiR~~~ 131 (240)
|..+++++.++|+ ++.+.|.++
T Consensus 91 I~aL~kEI~~Lr~---kL~e~r~~~ 112 (143)
T PRK11546 91 INAVAKEMENLRQ---SLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH
Confidence 3456677888887 555555543
No 77
>PF13871 Helicase_C_4: Helicase_C-like
Probab=21.47 E-value=1.8e+02 Score=27.27 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=37.8
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh-cCCCcHHHHHHHHHHH
Q 026285 68 EKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRT-AGIPDARTYLLTLKEI 127 (240)
Q Consensus 68 ~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~-~~~~daR~yL~~l~Ei 127 (240)
..+|+ |+-|.....+...+.+....+||.+.+..=. .+. ..-++|.+||+.+.=+
T Consensus 188 ~~~~~-~~~~~~~~~F~~~~~~~L~~VGL~~~~~~~g----~~~~~k~~~V~kFLNRLLGL 243 (278)
T PF13871_consen 188 PPVPP-PGYPGSLGEFFEDMRTALEGVGLLSEDDESG----GLKLDKDPSVPKFLNRLLGL 243 (278)
T ss_pred CccCC-CCccccHHHHHHHHHHHHhhcccccccccCC----cccccccccHHHHHHHhhCC
Confidence 44555 7888788889999999999999964321111 111 2345999999998643
No 78
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=21.36 E-value=1.6e+02 Score=26.69 Aligned_cols=136 Identities=19% Similarity=0.275 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHh---------cCCC----------ChHHHHHHHHH
Q 026285 48 KNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREK---------ADLF----------SESQRIAYTIE 108 (240)
Q Consensus 48 K~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k---------~gl~----------s~~e~I~~tie 108 (240)
.....+.++.|..+|+ -. .+.++++...+...+..+... .... +-...|+.||+
T Consensus 7 ~~~~~~l~~~m~~Lm~------~~-~~~~~e~~~~fe~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~I~~TL~ 79 (248)
T PF04614_consen 7 DEFAKQLQDEMAELMG------GD-EEEDPEAAEQFEKLLKELGEAESEALSASGSKPSSASSESATDESFQSTISETLE 79 (248)
T ss_dssp ------HHHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHh------cc-cccCHHHHHHHHHHHHHHhcccccccccccccccccccCCCcchhHHHHHHHHHH
Confidence 4455667888988888 22 356788888888888766652 1111 33356778888
Q ss_pred HhhcCCCcHHHHHH--------HHHHHHHHcCC------CchhhhHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHH
Q 026285 109 TRTAGIPDARTYLL--------TLKEIRERRGL------IDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFD 174 (240)
Q Consensus 109 ~~~~~~~daR~yL~--------~l~EiR~~~Gl------~D~~G~~a~mm~ALdkvEK~igkpL~r~DkkGM~~L~ae~~ 174 (240)
.+.+.+.++-+=.. .+..+=..++. .++.+...+|..-+. .=+-|.++- .-|+-|..++-
T Consensus 80 ~L~es~~~~~~~~~~~~~~~dd~l~~ll~~m~~~~~~~~~~~~~~~~~l~~mm~---qL~SKevLY---ePmKel~~kyP 153 (248)
T PF04614_consen 80 RLKESGDNADAAAAEDSSNSDDMLAQLLKQMGGGGDGGGGGDEDFDKMLQGMMQ---QLLSKEVLY---EPMKELRDKYP 153 (248)
T ss_dssp ---------------------------------------------HHHHHHHHH---HHTSHHHHH---HHHHHHHHHHH
T ss_pred HHHhCcccccccccccccCCHHHHHHHHHHHhccccccCCCchhHHHHHHHHHH---HhccHhhhh---hhHHHHHHHhH
Confidence 77776665554331 11111113322 233333333332222 112222222 46777778888
Q ss_pred HHHHHhC--CCCCChhhHHHHHHH
Q 026285 175 KINKKLG--IRKEDLPKYEEQLEL 196 (240)
Q Consensus 175 kinkklG--i~~eDl~K~eee~el 196 (240)
+..++.+ +.+||+.+|+.|.++
T Consensus 154 ~wL~~n~~~l~~ed~~rY~~Q~~~ 177 (248)
T PF04614_consen 154 EWLEENKSKLSAEDYERYEKQYEL 177 (248)
T ss_dssp HHHHHHCCCS-HHHHHHHHHHHHH
T ss_pred HHHHhCcCcCCHHHHHHHHHHHHH
Confidence 8766655 667778888877654
No 79
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=20.93 E-value=59 Score=26.99 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHH
Q 026285 56 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQ 101 (240)
Q Consensus 56 kkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e 101 (240)
+.|-+++-.|-.+|.-. ++...--..|-+..+-.+++|||+++++
T Consensus 59 ND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqElkPtl~ELGI~t~Ee 103 (108)
T PF02284_consen 59 NDFALAVRILEGIKDKC-GNKKEIYPYILQELKPTLEELGIPTPEE 103 (108)
T ss_dssp T-HHHHHHHHHHHHHHT-TT-TTHHHHHHHHHHHHHHHHT---TTT
T ss_pred hhHHHHHHHHHHHHHHc-cChHHHHHHHHHHHhhHHHHhCCCCHHH
Confidence 45666666666666663 2222244455566666777888887765
No 80
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.34 E-value=2.7e+02 Score=26.28 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=52.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie 108 (240)
+.|..+-+.|..+++++.+.+- +...+.-+.+.++|| |-..|.+......+++||.+. ++.+...|+
T Consensus 5 l~Gk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~-as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~ 83 (288)
T PRK14171 5 IDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNP-ASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKIN 83 (288)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCc-cHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4677778888888888887764 445777778776666 567899999999999998652 355667777
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-++
T Consensus 84 ~LN~D 88 (288)
T PRK14171 84 ELNLD 88 (288)
T ss_pred HHcCC
Confidence 65443
No 81
>TIGR02215 phage_chp_gp8 phage conserved hypothetical protein, phiE125 gp8 family. This model describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. Members of this family show some similarity to members of pfam05135, a putative DNA packaging protein family.
Probab=20.32 E-value=1.5e+02 Score=25.78 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=29.1
Q ss_pred HHHHHHHHcCC--C-chhhhHHHHHHHHHHHHHhhCCccccc
Q 026285 123 TLKEIRERRGL--I-DEHGAEAMMMDALEKVEKEIKKPLMRN 161 (240)
Q Consensus 123 ~l~EiR~~~Gl--~-D~~G~~a~mm~ALdkvEK~igkpL~r~ 161 (240)
++.|.+.-.++ . |+.=....+..|.+.+|..+|++|++.
T Consensus 15 tl~e~K~~LRi~~~~eDa~l~~li~aA~~~iE~~tgr~l~~q 56 (188)
T TIGR02215 15 TVADFKAFLRLGTEVQDEVLRSLLTAARAAIEARTGKILISQ 56 (188)
T ss_pred CHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhCceeeee
Confidence 35566666666 2 344466788899999999999999874
Done!