Query 026285
Match_columns 240
No_of_seqs 27 out of 29
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o39_A Periplasmic protein rel 73.0 7.3 0.00025 30.4 5.8 36 70-105 52-99 (108)
2 4eve_A Neutrophil-activating p 56.4 39 0.0013 27.1 7.3 100 44-154 57-156 (164)
3 3kwo_A Putative bacterioferrit 55.9 37 0.0013 26.5 7.0 100 44-154 40-139 (152)
4 3ubc_A Hemoglobin-like flavopr 55.7 34 0.0012 25.4 6.5 78 101-195 22-99 (131)
5 3ngx_A Bifunctional protein fo 52.3 25 0.00086 31.4 6.0 70 41-113 4-82 (276)
6 4a5o_A Bifunctional protein fo 51.8 31 0.0011 31.0 6.5 72 41-113 8-91 (286)
7 3iq1_A DPS family protein; csg 49.4 63 0.0022 25.4 7.4 99 44-154 53-151 (159)
8 4abx_A DNA repair protein RECN 46.1 1.1E+02 0.0039 24.4 9.1 35 161-195 119-156 (175)
9 3itf_A Periplasmic adaptor pro 44.4 48 0.0016 26.9 6.0 79 26-104 9-126 (145)
10 1o9r_A Agrobacterium tumefacie 42.7 67 0.0023 25.2 6.6 99 44-154 52-151 (162)
11 2k48_A Nucleoprotein; viral pr 41.4 77 0.0026 25.2 6.5 76 137-217 27-105 (107)
12 2fjc_A Antigen TPF1; mini ferr 39.7 68 0.0023 25.1 6.1 100 44-154 48-147 (156)
13 4a26_A Putative C-1-tetrahydro 38.7 99 0.0034 27.9 7.7 72 41-113 9-93 (300)
14 2fup_A Hypothetical protein PA 37.8 86 0.003 23.9 6.4 63 47-109 8-84 (157)
15 3opc_A Uncharacterized protein 35.1 1E+02 0.0034 23.9 6.4 75 45-123 7-96 (154)
16 4b4u_A Bifunctional protein fo 34.8 84 0.0029 28.5 6.6 73 40-113 25-109 (303)
17 1zs3_A Lactococcus lactis Mg13 34.4 1.1E+02 0.0037 25.4 6.8 100 44-154 58-159 (182)
18 2c2x_A Methylenetetrahydrofola 34.1 75 0.0026 28.4 6.1 72 41-113 6-88 (281)
19 2bk6_A Non-heme iron-containin 33.6 1.1E+02 0.0037 23.9 6.4 100 44-154 43-143 (156)
20 4hrt_B Hemoglobin B chain; oxy 32.2 1.3E+02 0.0046 23.0 6.6 84 100-195 33-122 (152)
21 1zuj_A Hypothetical protein ll 31.2 1E+02 0.0035 25.4 6.1 97 44-154 57-158 (179)
22 3p2o_A Bifunctional protein fo 29.6 1E+02 0.0035 27.6 6.2 72 41-113 7-89 (285)
23 2chp_A MRGA, metalloregulation 29.5 1.9E+02 0.0064 22.4 7.2 99 44-154 47-145 (153)
24 3r8n_J 30S ribosomal protein S 28.8 43 0.0015 25.1 3.2 31 67-97 1-31 (98)
25 2c2u_A DPS, DNA-binding stress 28.3 1.5E+02 0.0053 24.8 6.8 97 46-154 97-194 (207)
26 4hrt_A Globin-2 A chain; oxyge 27.8 88 0.003 24.1 4.9 105 71-195 10-120 (150)
27 1use_A VAsp, vasodilator-stimu 27.6 83 0.0028 21.5 4.1 38 182-220 4-41 (45)
28 4hde_A SCO1/SENC family lipopr 26.6 35 0.0012 26.4 2.4 38 49-86 53-92 (170)
29 3oeo_A Spheroplast protein Y; 25.2 64 0.0022 25.5 3.7 52 53-104 37-114 (138)
30 3l07_A Bifunctional protein fo 25.2 2E+02 0.0069 25.6 7.3 72 41-113 7-90 (285)
31 2o8s_A AGR_C_984P; all alpha-h 25.0 57 0.0019 30.1 3.8 55 92-149 70-133 (323)
32 2yjk_A AFP, DPS; metal-binding 24.1 1.5E+02 0.0052 23.3 5.7 98 44-154 55-152 (161)
33 2cf7_A DPR; peroxide resistanc 24.0 2.2E+02 0.0076 22.5 6.7 99 44-154 52-152 (165)
34 1gcv_B Hemoglobin; oxygen stor 23.9 93 0.0032 23.9 4.3 102 71-198 2-104 (136)
35 2wlu_A DPS-like peroxide resis 23.6 2.2E+02 0.0075 22.8 6.7 100 44-154 62-162 (175)
36 1v54_E Cytochrome C oxidase po 23.2 32 0.0011 27.5 1.5 45 56-101 59-103 (109)
37 1xkp_A Putative membrane-bound 22.4 3.8E+02 0.013 23.2 9.0 88 65-155 37-140 (246)
38 3l4a_A Odorant binding protein 21.9 1.4E+02 0.0047 23.2 5.0 66 84-157 5-70 (141)
39 2ca5_A MXIH; transport protein 21.8 1.1E+02 0.0037 23.5 4.1 29 55-88 27-55 (85)
40 3g46_A Globin-1; oxygen transp 21.3 84 0.0029 24.0 3.6 105 71-195 9-119 (146)
41 2xgw_A Peroxide resistance pro 21.2 2.5E+02 0.0084 23.3 6.7 99 45-154 79-178 (199)
42 2ic9_A Nucleocapsid protein; h 21.2 2E+02 0.0068 22.4 5.6 64 169-237 24-90 (96)
43 2z90_A Starvation-inducible DN 20.4 2E+02 0.0067 22.6 5.7 98 45-154 54-151 (161)
44 2d5k_A DPS, DPS family protein 20.0 3E+02 0.01 21.1 6.7 114 29-154 26-140 (156)
No 1
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=73.01 E-value=7.3 Score=30.36 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHHH
Q 026285 70 ITIAPEDPAAVSQYANVMKTVREK------------ADLFSESQRIAY 105 (240)
Q Consensus 70 i~idp~DpaAV~~YA~~~~~ir~k------------~gl~s~~e~I~~ 105 (240)
|+=++-|++||..++..|..+... ..|++|+|+-+.
T Consensus 52 i~ad~FDEaaar~l~~~~~~~~~e~~v~~~r~~~qmy~lLTPEQk~q~ 99 (108)
T 3o39_A 52 IASDTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQF 99 (108)
T ss_dssp HSSSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 334678999999999988887655 789999998663
No 2
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=56.36 E-value=39 Score=27.08 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
-.++...+.+....+..+.+-++.+.-+ .|+.+..+.+++..-. ...|-.++.+-|...++.+..-+...|.-...
T Consensus 57 H~~~ee~~~e~~~~~D~lAERI~~LGg~-P~~t~~~~~~~s~i~e---~~~~~~~~~eml~~ll~~~~~~i~~~r~~i~~ 132 (164)
T 4eve_A 57 HKATEEIYEEFADMFDDLAERIVQLGHH-PLVTLSEAIKLTRVKE---ETKTSFHSKDIFKEILEDYKHLEKEFKELSNT 132 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCHHHHHHHCCSCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHcCCCc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777767766665 3577777776654321 12343478888888888777666666665555
Q ss_pred HHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 124 l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+ ..+.++..+|.+-+...||.+
T Consensus 133 aee-------~~D~~T~dll~~il~~~Ek~~ 156 (164)
T 4eve_A 133 AEK-------EGDKVTVTYADDQLAKLQKSI 156 (164)
T ss_dssp HHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 444 456788888999999998864
No 3
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=55.86 E-value=37 Score=26.53 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
-.++...+.+....+..+.+-+....-+ .|+.+..+.+++..-. ...|-+++.+-|...++.+..-+...|.-...
T Consensus 40 H~~~ee~~~~~~~~~D~iAERI~~LGg~-P~~t~~~~~~~s~i~e---~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~ 115 (152)
T 3kwo_A 40 HEYTEKAYEEMAELFDSCAERVLQLGEK-AITCQKVLMENAKSPK---VAKDCFTPLEVIELIKQDYEYLLAEFKKLNEA 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCCCHHHHHHHCCSCC---CCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHhHCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777767666654 2577777766654322 13444588888888888776666655555554
Q ss_pred HHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 124 l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+ ..+.++..+|-+-+...||.+
T Consensus 116 a~~-------~~D~~T~dll~~~l~~~Ek~~ 139 (152)
T 3kwo_A 116 AEK-------ESDTTTAAFAQENIAKYEKSL 139 (152)
T ss_dssp HHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 444 456788888888888888754
No 4
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=55.71 E-value=34 Score=25.43 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHh
Q 026285 101 QRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 180 (240)
Q Consensus 101 e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~igkpL~r~DkkGM~~L~ae~~kinkkl 180 (240)
+--......++...|++|+|+.. |...=-..++.+|+.+=+.+ +|-.+..-..+++..--.++
T Consensus 22 ~~g~~fy~rlf~~~P~~k~~F~~-----------d~~~h~~~l~~al~~~v~~l------d~~~~l~~~l~~L~~~H~~~ 84 (131)
T 3ubc_A 22 EIGLLFYANLFKEEPTVSVLFQN-----------PISSQSRKLMQVLGILVQGI------DNLEGLIPTLQDLGRRHKQY 84 (131)
T ss_dssp HHHHHHHHHHHHHCGGGGGGCCS-----------CHHHHHHHHHHHHHHHHHTG------GGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChHHHHHccc-----------cHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHHHHc
Confidence 34445556678888888888875 12222334677887775544 56667777778888888889
Q ss_pred CCCCCChhhHHHHHH
Q 026285 181 GIRKEDLPKYEEQLE 195 (240)
Q Consensus 181 Gi~~eDl~K~eee~e 195 (240)
|++|+.++-+.+-+.
T Consensus 85 gV~p~~f~~~~~~Ll 99 (131)
T 3ubc_A 85 GVVDSHYPLVGDCLL 99 (131)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999987755443
No 5
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=52.27 E-value=25 Score=31.44 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHhh
Q 026285 41 LKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIETRT 111 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~~~ 111 (240)
+.|-.+-+.|-.+++++...+ +...+.-+.+.++||+. .-|.......-+++|| |. ++.+...|+.+-
T Consensus 4 ldGk~~a~~i~~~~~~~v~~l-~~~P~Lavilvg~dpaS-~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN 80 (276)
T 3ngx_A 4 LRGEEIAEKKAENLHGIIERS-GLEPSLKLIQIGDNEAA-SIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLA 80 (276)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT-TCCCEEEEEEESCCHHH-HHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEeCCCHHH-HHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHc
Confidence 467778888999999998887 88888889998888864 5699888899999999 64 567777887765
Q ss_pred cC
Q 026285 112 AG 113 (240)
Q Consensus 112 ~~ 113 (240)
.+
T Consensus 81 ~D 82 (276)
T 3ngx_A 81 KD 82 (276)
T ss_dssp HC
T ss_pred CC
Confidence 54
No 6
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=51.81 E-value=31 Score=31.00 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh---hhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETALG---VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~---~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|..+-+.|-.++++....+-. ...+.-+.+.++||+... |.......-+++||.| .++.+...|+
T Consensus 8 idGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~-Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~ 86 (286)
T 4a5o_A 8 IDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQV-YVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALID 86 (286)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHH-HHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 57778888888899988887763 346777888888988765 9998899999999854 3567888888
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-.+
T Consensus 87 ~lN~d 91 (286)
T 4a5o_A 87 RLNDD 91 (286)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 77665
No 7
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=49.36 E-value=63 Score=25.36 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
-.++...+.+....+..+.+-++...-+ .++.+..+.+++.. .+.-|-+++.+-|...++.+..-+...|.-...
T Consensus 53 H~~~ee~~~~~~~~~D~lAERI~~LGg~-P~~t~~~~~~~s~i----~e~~~~~~~~eml~~ll~~~~~~i~~~r~~i~~ 127 (159)
T 3iq1_A 53 HAKFEEIYTDLQLKIDELAERILTLSAR-PMHSFSGYLKAAQI----KEHTDSIDGRSSMQGLVDGFSILLHQQRDILEL 127 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCSS----CCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHCCC----CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666554 25677776665542 222366788888888888877666666665555
Q ss_pred HHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 124 l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+ ..+.++..+|-+-+...||.+
T Consensus 128 ae~-------~~D~~T~dll~~~l~~~Ek~~ 151 (159)
T 3iq1_A 128 AGE-------TGDEGTSALMSDYIREQEKLV 151 (159)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HhH-------cCCHHHHHHHHHHHHHHHHHH
Confidence 544 346788888888899888864
No 8
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=46.13 E-value=1.1e+02 Score=24.44 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=23.3
Q ss_pred ccHhhHHHHHHHH---HHHHHHhCCCCCChhhHHHHHH
Q 026285 161 NDKKGMALLTAEF---DKINKKLGIRKEDLPKYEEQLE 195 (240)
Q Consensus 161 ~DkkGM~~L~ae~---~kinkklGi~~eDl~K~eee~e 195 (240)
.|..-...+...+ -.+.+|||..++++..+.+++.
T Consensus 119 ~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~ 156 (175)
T 4abx_A 119 ADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAA 156 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444444444 4566899999999988877654
No 9
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=44.43 E-value=48 Score=26.89 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=36.2
Q ss_pred chhHhhhhhhcCCc-CC-CchhHHHHHH-----------HHHHHHHHHHHhhhhccc--------------cccCCCCHH
Q 026285 26 AISVRFFANEAAPQ-AL-KGDEMLKNIF-----------LDVKKKFETALGVLRKEK--------------ITIAPEDPA 78 (240)
Q Consensus 26 ~~~vR~fA~~Aap~-~~-kgdd~lK~iF-----------~~vqkkF~~~l~~lkk~k--------------i~idp~Dpa 78 (240)
+.+.|.||+...|| .. .|+...+.+. -+|+.+.+.++...+... |+-+.-|++
T Consensus 9 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~m~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad~fDea 88 (145)
T 3itf_A 9 GLVPRGSAAEVGSGDNWHPGEELTQRSTQSHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDEN 88 (145)
T ss_dssp --------------------------CCCCSTTTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCSSCCHH
T ss_pred cchhhhhcCCCCCCCCCCCCchHhhccccccccccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccCCCCHH
Confidence 45677787764442 22 2333322221 245666666655544321 122456899
Q ss_pred HHHHHHHHHHHHHHh------------cCCCChHHHHH
Q 026285 79 AVSQYANVMKTVREK------------ADLFSESQRIA 104 (240)
Q Consensus 79 AV~~YA~~~~~ir~k------------~gl~s~~e~I~ 104 (240)
+|..+++.+..+..+ ..|.+|+|+-+
T Consensus 89 a~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk~q 126 (145)
T 3itf_A 89 AVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQQAV 126 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 999999998877665 68899999865
No 10
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=42.68 E-value=67 Score=25.22 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVRE-KADLFSESQRIAYTIETRTAGIPDARTYLL 122 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~-k~gl~s~~e~I~~tie~~~~~~~daR~yL~ 122 (240)
-+++...+.+....+..+.+-+....-+ .|+.+..+.+++.. .+ ..|-+++.+-+...++.+..-+...|.-..
T Consensus 52 h~~~ee~~~e~~~~aD~lAERI~~LGg~-P~~~~~~~~~~s~i----~e~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~ 126 (162)
T 1o9r_A 52 HELLDTFRTQLDNHGDTIAERVVQLGGT-ALGSLQAVSSTTKL----KAYPTDIYKIHDHLDALIERYGEVANMIRKAID 126 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCCS----CCCCSSCCBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHhHCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667777777666666555 35777777665432 22 345568888888888888777766666655
Q ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 123 ~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.+.+ ..+.++..++-+-|...||.+
T Consensus 127 ~a~~-------~~D~~T~dll~~il~~~Ek~~ 151 (162)
T 1o9r_A 127 DSDE-------AGDPTTADIFTAASRDLDKSL 151 (162)
T ss_dssp HHHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-------CCCHHHHHHHHHHHHHHHHHH
Confidence 5554 346788888888888888865
No 11
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.41 E-value=77 Score=25.21 Aligned_cols=76 Identities=16% Similarity=0.358 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHHHHHHHHHHHHHHHH
Q 026285 137 HGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPK---YEEQLELKIAKAQLEELKKDALEA 213 (240)
Q Consensus 137 ~G~~a~mm~ALdkvEK~igkpL~r~DkkGM~~L~ae~~kinkklGi~~eDl~K---~eee~el~~aK~~L~elkk~a~e~ 213 (240)
-|...+||+-|.++|+++.. =+.-...-..++...++.++-+|.|.-| -.-+.+...+++-|.+||..--++
T Consensus 27 ~~~~~~tM~~ieeLQ~Ei~~-----~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 27 QGIDPFTMSTLQELQENITA-----HEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999998753 2333344455678889999999999755 345677888999999999988887
Q ss_pred HHHH
Q 026285 214 METQ 217 (240)
Q Consensus 214 m~~~ 217 (240)
..+.
T Consensus 102 va~g 105 (107)
T 2k48_A 102 VAAQ 105 (107)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 12
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=39.71 E-value=68 Score=25.10 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
-+++...+.+..+.+..+.+-+....-+ .|+.+..+.+++..-. ...|.+++.+-+...++.+..-+...|.-...
T Consensus 48 h~~~ee~~~e~~~~aD~lAERI~~LGg~-P~~~~~~~~~~s~i~e---~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~ 123 (156)
T 2fjc_A 48 HELLEEYYVSVTEAFDTIAERLLQLGAQ-APASMAEYLALSGIAE---ETEKEITIVSALARVKRDFEYLSTRFSQTQVL 123 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCC---CCCCSEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHhhCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777777666666555 2566766666543221 12333577788888887776666655555544
Q ss_pred HHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 124 l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+ ..+.++..+|-+-|...||.+
T Consensus 124 a~~-------~~D~~T~dll~~il~~~Ek~~ 147 (156)
T 2fjc_A 124 AAE-------SGDAVTDGIITDILRTLGKAI 147 (156)
T ss_dssp HHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred Hhh-------CCCHHHHHHHHHHHHHHHHHH
Confidence 444 456778888888888888864
No 13
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=38.68 E-value=99 Score=27.86 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHH---h-hhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL---G-VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTI 107 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l---~-~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~ti 107 (240)
+.|..+-+.|-.++++....+- + ...++-+.+.++||+.. -|.......-+++||.| .++.+...|
T Consensus 9 idGk~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~-~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I 87 (300)
T 4a26_A 9 IDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSK-KYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNV 87 (300)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHH-HHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCHHHH-HHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 5778888889889998888765 3 56778888888888765 58888888889999853 356788888
Q ss_pred HHhhcC
Q 026285 108 ETRTAG 113 (240)
Q Consensus 108 e~~~~~ 113 (240)
+.+-.+
T Consensus 88 ~~lN~d 93 (300)
T 4a26_A 88 EKLNND 93 (300)
T ss_dssp HHHHTC
T ss_pred HHhcCC
Confidence 877655
No 14
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=37.75 E-value=86 Score=23.91 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHH--------------HHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 026285 47 LKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVS--------------QYANVMKTVREKADLFSESQRIAYTIET 109 (240)
Q Consensus 47 lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~--------------~YA~~~~~ir~k~gl~s~~e~I~~tie~ 109 (240)
|..++.+...-++.+++.+..+.--|.-+|..++. +++..+..+...+|++++...+...+..
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~ 84 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE 84 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc
Confidence 56778888889999999998888887788876654 4555566666678888877776655443
No 15
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=35.12 E-value=1e+02 Score=23.94 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccccCC-CCHHHHHH--------------HHHHHHHHHHhcCCCChHHHHHHHHHH
Q 026285 45 EMLKNIFLDVKKKFETALGVLRKEKITIAP-EDPAAVSQ--------------YANVMKTVREKADLFSESQRIAYTIET 109 (240)
Q Consensus 45 d~lK~iF~~vqkkF~~~l~~lkk~ki~idp-~DpaAV~~--------------YA~~~~~ir~k~gl~s~~e~I~~tie~ 109 (240)
+-|..+..+...-++.+++.|..+.--|.- +|+.++.. +...+..+...+|++++...+...+.
T Consensus 7 ~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~- 85 (154)
T 3opc_A 7 AALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA- 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH-
Confidence 457788888999999999999988888877 88876554 44455556667899988877766654
Q ss_pred hhcCCCcHHHHHHH
Q 026285 110 RTAGIPDARTYLLT 123 (240)
Q Consensus 110 ~~~~~~daR~yL~~ 123 (240)
..|.++.-...
T Consensus 86 ---~~~~l~~~w~~ 96 (154)
T 3opc_A 86 ---AHPELGPLWQA 96 (154)
T ss_dssp ---HCGGGHHHHHH
T ss_pred ---hChHHHHHHHH
Confidence 23454444433
No 16
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=34.79 E-value=84 Score=28.52 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=54.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH---hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHH
Q 026285 40 ALKGDEMLKNIFLDVKKKFETAL---GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTI 107 (240)
Q Consensus 40 ~~kgdd~lK~iF~~vqkkF~~~l---~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~ti 107 (240)
=++|-.+-+.|-.+++++...+- +..+.+-+.+.++|||.. -|.......-+++||.| .++.+.+.|
T Consensus 25 ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LavIlVG~dpaS~-~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I 103 (303)
T 4b4u_A 25 VLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASA-TYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEI 103 (303)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEESCCHHHH-HHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeCCCHHHH-HHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHH
Confidence 46777777888888877776654 567788888988888765 59988888899999864 356677778
Q ss_pred HHhhcC
Q 026285 108 ETRTAG 113 (240)
Q Consensus 108 e~~~~~ 113 (240)
+.+-.+
T Consensus 104 ~~LN~D 109 (303)
T 4b4u_A 104 EKLNAN 109 (303)
T ss_dssp HHHHTC
T ss_pred HHhcCC
Confidence 776654
No 17
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=34.38 E-value=1.1e+02 Score=25.36 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHH-HHHHHHHHHhcC-CCChHHHHHHHHHHhhcCCCcHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQY-ANVMKTVREKAD-LFSESQRIAYTIETRTAGIPDARTYL 121 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~Y-A~~~~~ir~k~g-l~s~~e~I~~tie~~~~~~~daR~yL 121 (240)
-.++-..+.++...+..+=+-++.+.-+ .|+.++.+.++ +..-. ...| .++..+.|...++.+..-+..+|.-.
T Consensus 58 H~~fee~y~~~~~~~D~iAERi~~LG~~-p~~t~~e~~~~~s~i~e---~~~~~~~~~~e~l~~L~~d~~~~~~~~r~~i 133 (182)
T 1zs3_A 58 CEYLREIAQREVEYFFKISDLLLDENEI-VPSTTEEFLKYHKFITE---DPKAKYWTDEDLLESFIVDFQAQNMFITRAI 133 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCCC---CGGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHhcCcCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777777778877777 47888877776 54322 1223 35777788877776544333333332
Q ss_pred HHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 122 LTLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 122 ~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
..+.+ ..+.++..+|-+-+...||.+
T Consensus 134 ~~A~e-------~~D~~Tadll~~~~~~~EK~~ 159 (182)
T 1zs3_A 134 KLANK-------EEKFALAAGVVELYGYNLQVI 159 (182)
T ss_dssp HHHHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------CCCHhHHHHHHHHHHHHHHHH
Confidence 22222 446788899999999999864
No 18
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=34.08 E-value=75 Score=28.43 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=53.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHH--hhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETAL--GVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l--~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~ 109 (240)
+.|..+-+.|-.++++....+- +..+++-+.+.++||+ -.-|.......-+++||.|. ++.+.+.|+.
T Consensus 6 idGk~ia~~i~~~~~~~v~~l~~~g~~P~Lavilvg~dpa-s~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~ 84 (281)
T 2c2x_A 6 LDGKATRDEIFGDLKQRVAALDAAGRTPGLGTILVGDDPG-SQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDE 84 (281)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCCHH-HHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCChh-hHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677788888888888877765 3336777888877775 46788888888899998653 5667777877
Q ss_pred hhcC
Q 026285 110 RTAG 113 (240)
Q Consensus 110 ~~~~ 113 (240)
+-.+
T Consensus 85 lN~D 88 (281)
T 2c2x_A 85 LNAN 88 (281)
T ss_dssp HHHC
T ss_pred hcCC
Confidence 6554
No 19
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=33.56 E-value=1.1e+02 Score=23.86 Aligned_cols=100 Identities=9% Similarity=0.037 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHhhcCCCcHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF-SESQRIAYTIETRTAGIPDARTYLL 122 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~-s~~e~I~~tie~~~~~~~daR~yL~ 122 (240)
-+++...+.+....+..+.+-+....-+ .|+.+..+.+++..-. ...|-+ ++.+.+...++.+..-+...|.-..
T Consensus 43 h~~~ee~~~e~~~~~D~lAERI~~Lgg~-P~~~~~~~~~~s~l~e---~~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~ 118 (156)
T 2bk6_A 43 HEKMDDLYSEFGEQMDEVAERLLAIGGS-PFSTLKEFLENASVEE---APYTKPKTMDQLMEDLVGTLELLRDEYKQGIE 118 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCC---CCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHhHCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666667777777766666655 3577777776643221 134444 7888888888877766666555544
Q ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 123 ~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.+.+ ..+.++..+|-+-|...||.+
T Consensus 119 ~a~~-------~~D~~T~dll~~il~~~Ek~~ 143 (156)
T 2bk6_A 119 LTDK-------EGDDVTNDMLIAFKASIDKHI 143 (156)
T ss_dssp HHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 4444 256678888888888888764
No 20
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=32.19 E-value=1.3e+02 Score=23.03 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhH------HHHHHHHHHHHHhhCCccccccHhhHHHHHHHH
Q 026285 100 SQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAE------AMMMDALEKVEKEIKKPLMRNDKKGMALLTAEF 173 (240)
Q Consensus 100 ~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~------a~mm~ALdkvEK~igkpL~r~DkkGM~~L~ae~ 173 (240)
++--......++..-|+.|+|+...+ ++....+.. ..+|.+|+.+=+.+ +|...+.-+.+.+
T Consensus 33 ~~~g~~~y~rlF~~~P~~k~~F~~f~------~~~~~~~~~~~~~h~~~v~~al~~~v~~l------dd~~~l~~~l~~L 100 (152)
T 4hrt_B 33 EGTGLMLMANLFKTSPSAKGKFARLG------DVSAGKDNSKLRGHSITLMYALQNFVDAL------DDVERLKCVVEKF 100 (152)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHTGGGC------CCC---CCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHhHHHhhHHhC------CCCccccCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHH
Confidence 34445556668888999999987542 232211221 13778888876655 4555666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHH
Q 026285 174 DKINKKLGIRKEDLPKYEEQLE 195 (240)
Q Consensus 174 ~kinkklGi~~eDl~K~eee~e 195 (240)
..--.++||+|+.++-+.+-+.
T Consensus 101 ~~~H~~~gV~p~~f~~~~~~Ll 122 (152)
T 4hrt_B 101 AVNHINRQISADEFGEIVGPLR 122 (152)
T ss_dssp HHHHHC-CCCHHHHGGGHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHH
Confidence 6666677999998887765443
No 21
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=31.22 E-value=1e+02 Score=25.41 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHH-HHHHHHHHHhcC-CCChHHHHHHHHHHhhcCCCcHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQY-ANVMKTVREKAD-LFSESQRIAYTIETRTAGIPDARTYL 121 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~Y-A~~~~~ir~k~g-l~s~~e~I~~tie~~~~~~~daR~yL 121 (240)
=.++-..+.++...+..+=+-++.+.-+ .|+.++.+.++ +..-. ...| .++..+.|...++.+..-
T Consensus 57 H~~fee~y~~~~~~~D~iAERi~~LG~~-p~~t~~e~~~~~s~i~e---~~~~~~~~~~e~l~~l~~d~~~~-------- 124 (179)
T 1zuj_A 57 RIKFREIALKEDEWFYLISEQLLDENEL-VPTTLDEFVSNHKFIEN---DPKAKYWTDEALIENFINDFQNQ-------- 124 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCCC---CTTGGGSCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHhcCcCCC---CCCCCCCCHHHHHHHHHHHHHHH--------
Confidence 5666677777777777777778877777 47888777776 53322 1223 357778888777765433
Q ss_pred HHHHHHHHHcCC---CchhhhHHHHHHHHHHHHHhh
Q 026285 122 LTLKEIRERRGL---IDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 122 ~~l~EiR~~~Gl---~D~~G~~a~mm~ALdkvEK~i 154 (240)
+..+|....+ ..+.++..+|-+-+...||.+
T Consensus 125 --~~~~r~~i~~a~e~~D~~Tadll~~~~~~~EK~~ 158 (179)
T 1zuj_A 125 --NLFIGRAIKLAQKEEKFSLELAIRKLYGYNLSII 158 (179)
T ss_dssp --HHHHHHHTHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3333333333 346788899999999999864
No 22
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=29.64 E-value=1e+02 Score=27.59 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=54.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh--hhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETALG--VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIET 109 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~--~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~ 109 (240)
+.|-.+-+.|-.+++.....+-. ...+.-+.+.++||+. .-|.......-+++||.| .++.+...|+.
T Consensus 7 idGk~~a~~i~~~~~~~v~~l~~~~~~P~Lavilvg~dpaS-~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 85 (285)
T 3p2o_A 7 LDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS-QTYVKSKAKACEECGIKSLVYHLNENITQNELLALINT 85 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHH-HHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHH-HHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 56777888888888888887653 3567778888888865 568888888889999853 35678888877
Q ss_pred hhcC
Q 026285 110 RTAG 113 (240)
Q Consensus 110 ~~~~ 113 (240)
+-.+
T Consensus 86 lN~d 89 (285)
T 3p2o_A 86 LNHD 89 (285)
T ss_dssp HHHC
T ss_pred HhCC
Confidence 6654
No 23
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=29.51 E-value=1.9e+02 Score=22.42 Aligned_cols=99 Identities=11% Similarity=0.142 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
-+++...+.+....+..+.+-+....-+ .|+.+..+.+++..-. ...|- ++.+-+...++.+..-+...|.-...
T Consensus 47 h~~~ee~~~e~~~~~D~lAERI~~LGg~-P~~~~~~~~~~s~i~e---~~~~~-~~~eml~~~l~~~~~~i~~~r~~i~~ 121 (153)
T 2chp_A 47 HEKFEELYDHAAETVDTIAERLLAIGGQ-PVATVKEYTEHASITD---GGNET-SASEMVQALVNDYKQISSESKFVIGL 121 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCSSCS---CCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHhHCCCCC---CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666667777777766666555 3577777766643221 12233 67777777777766555555544443
Q ss_pred HHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 124 l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+ ..+.+...+|-+-|...||.+
T Consensus 122 a~~-------~~D~~T~dll~~il~~~Ek~~ 145 (153)
T 2chp_A 122 AEE-------NQDNATADLFVGLIEEVEKQV 145 (153)
T ss_dssp HHH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred Hhh-------CCCHHHHHHHHHHHHHHHHHH
Confidence 333 456788888888888888864
No 24
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=28.85 E-value=43 Score=25.07 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=28.0
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhcCCC
Q 026285 67 KEKITIAPEDPAAVSQYANVMKTVREKADLF 97 (240)
Q Consensus 67 k~ki~idp~DpaAV~~YA~~~~~ir~k~gl~ 97 (240)
+++|.|.+.|.+.+..|++....+.+..|+.
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~ 31 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQ 31 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCe
Confidence 4678889999999999999999999998875
No 25
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=28.25 E-value=1.5e+02 Score=24.78 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 026285 46 MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVRE-KADLFSESQRIAYTIETRTAGIPDARTYLLTL 124 (240)
Q Consensus 46 ~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~-k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l 124 (240)
++...+.+....+..+.+-+..+.-. .++.+..+.+++. |.+ ..|.+++.+-|...++.+..-+...|.-...+
T Consensus 97 ~~ee~~~e~~~haD~lAERIl~LGG~-P~~t~~~~~~~s~----I~e~~~g~~~~~emL~~ll~~e~~~i~~~re~i~~a 171 (207)
T 2c2u_A 97 AYDEFIAEIFPSIDEQAERLVALGGS-PLAAPADLARYST----VQVPQETVRDARTQVADLVQDLSRVGKGYRDDSQAC 171 (207)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTTBC-CCCSHHHHHHHCS----SCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHhCC----CCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455545544444 2456655555432 111 22456778888888887776666666655544
Q ss_pred HHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 125 KEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 125 ~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.+ ..+.+...+|-+-|...||.+
T Consensus 172 ee-------~~D~~T~dLl~~il~~~Ekhi 194 (207)
T 2c2u_A 172 DE-------ANDPVTADMYNGYAATIDKIR 194 (207)
T ss_dssp HH-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 44 446778888888888888764
No 26
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=27.76 E-value=88 Score=24.10 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=62.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhh------HHHHH
Q 026285 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGA------EAMMM 144 (240)
Q Consensus 71 ~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~------~a~mm 144 (240)
++++.+.+.|+.--.++.. ...+--......++..-|+.|+|....+ ++....+. -..+|
T Consensus 10 ~ls~~~~~~V~~sw~~v~~--------~~~~~g~~~~~rlF~~~P~~k~~F~~~~------~~~~~~~~~~~~~H~~~v~ 75 (150)
T 4hrt_A 10 CGSEAIKANLRRSWGVLSA--------DIEATGLMLMSNLFTLRPDTKTYFTRLG------DVQKGKANSKLRGHAITLT 75 (150)
T ss_dssp HTCHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHCGGGGGGGGGGC------CGGGGGGSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHCHHHHHHHHHcC------CCCccccCHHHHHHHHHHH
Confidence 3445555555554444432 2344445566678888999999987642 23221111 13488
Q ss_pred HHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 026285 145 DALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLE 195 (240)
Q Consensus 145 ~ALdkvEK~igkpL~r~DkkGM~~L~ae~~kinkklGi~~eDl~K~eee~e 195 (240)
.||+.+=+.+ +|...+..+...+..--.++|++|+.++-+.+-+.
T Consensus 76 ~al~~~v~~l------dd~~~L~~~l~~l~~~H~~~gV~p~~f~~~~~~Ll 120 (150)
T 4hrt_A 76 YALNNFVDSL------DDPSRLKCVVEKFAVNHINRKISGDAFGAIVEPMK 120 (150)
T ss_dssp HHHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHHH
T ss_pred HHHHHHHHHC------CCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 8888887776 34444555555555555556999999987765443
No 27
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=27.56 E-value=83 Score=21.54 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=28.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026285 182 IRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKR 220 (240)
Q Consensus 182 i~~eDl~K~eee~el~~aK~~L~elkk~a~e~m~~~kkr 220 (240)
+...|+.++.+|+ |+--..+|..+|++.++|+.....|
T Consensus 4 ~~~~dle~~KqEI-L~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 4 SDYSDLQRVKQEL-LEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788888775 4555778999999999998765444
No 28
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=26.57 E-value=35 Score=26.38 Aligned_cols=38 Identities=8% Similarity=0.168 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCC--CCHHHHHHHHHH
Q 026285 49 NIFLDVKKKFETALGVLRKEKITIAP--EDPAAVSQYANV 86 (240)
Q Consensus 49 ~iF~~vqkkF~~~l~~lkk~ki~idp--~DpaAV~~YA~~ 86 (240)
.-+.++++.|...=..+.=..|++|| +.|+.+++|+..
T Consensus 53 ~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~ 92 (170)
T 4hde_A 53 ANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQK 92 (170)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTT
T ss_pred HHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHH
Confidence 34566777776532335556788998 479999999753
No 29
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=25.24 E-value=64 Score=25.53 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhccc--------------cccCCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHH
Q 026285 53 DVKKKFETALGVLRKEK--------------ITIAPEDPAAVSQYANVMKTVREK------------ADLFSESQRIA 104 (240)
Q Consensus 53 ~vqkkF~~~l~~lkk~k--------------i~idp~DpaAV~~YA~~~~~ir~k------------~gl~s~~e~I~ 104 (240)
+|+.+.++++...+..- |.-+.-|+++|..+++.+..++.+ ..+++|+|+-+
T Consensus 37 eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~a~~fDeaav~al~~~~~~~~~e~~~~~~~~~~~~~~vLTPEQr~q 114 (138)
T 3oeo_A 37 AQKQQIREIMKGQRDQMKRPPLEERRAMHDIITSDTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQ 114 (138)
T ss_dssp THHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHTCSSCCHHHHHHHHGGGSHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35556666555544331 222456999999988776665544 68899998754
No 30
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=25.21 E-value=2e+02 Score=25.64 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=55.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHh---hhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHH
Q 026285 41 LKGDEMLKNIFLDVKKKFETALG---VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIE 108 (240)
Q Consensus 41 ~kgdd~lK~iF~~vqkkF~~~l~---~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie 108 (240)
+.|-.+-+.|-.++++....+-. ..++.-+.+.++||+. .-|.......-+++||.+ .++.+...|+
T Consensus 7 ldGk~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS-~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~ 85 (285)
T 3l07_A 7 IDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPAS-KTYVASKEKACAQVGIDSQVITLPEHTTESELLELID 85 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEESCCHHH-HHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEECCCHHH-HHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 56778888888888888877653 4677788888888875 468888888889999854 3567778887
Q ss_pred HhhcC
Q 026285 109 TRTAG 113 (240)
Q Consensus 109 ~~~~~ 113 (240)
.+-.+
T Consensus 86 ~lN~d 90 (285)
T 3l07_A 86 QLNND 90 (285)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 77655
No 31
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; 2.40A {Agrobacterium tumefaciens} SCOP: a.295.1.1
Probab=25.01 E-value=57 Score=30.13 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=37.2
Q ss_pred HhcCCCChHHHHHHHHHHhhcCCCcHH---------HHHHHHHHHHHHcCCCchhhhHHHHHHHHHH
Q 026285 92 EKADLFSESQRIAYTIETRTAGIPDAR---------TYLLTLKEIRERRGLIDEHGAEAMMMDALEK 149 (240)
Q Consensus 92 ~k~gl~s~~e~I~~tie~~~~~~~daR---------~yL~~l~EiR~~~Gl~D~~G~~a~mm~ALdk 149 (240)
+.+...+-+..|....+|+++.|.+|. .-|..+-. .+||+|+..+++.|...|+.
T Consensus 70 ~~~~~~a~~p~v~Re~~Yf~enIg~V~SvDDLL~D~RLl~~AL~---AfGLed~~~akaflkKVLes 133 (323)
T 2o8s_A 70 KSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALK---AHGLEDMAYAKAFIRKVLTE 133 (323)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHH---HTTGGGSTTCHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCCHHHHhccHHHHHHHHH---hcCCchhhchHHHHHHHHhc
Confidence 333344455566666667666665543 33445555 89999999999999999864
No 32
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=24.13 E-value=1.5e+02 Score=23.25 Aligned_cols=98 Identities=10% Similarity=0.104 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
-+++...+.+..+.+..+.+-+....-+ .|+.+..+.+++ . +. ...|-+++.+-+...++.+..-+...|.-. .
T Consensus 55 h~~~ee~~~e~~~~aD~lAERI~~LGg~-P~~t~~~~~~~s-i-~e--~~~~~~~~~eml~~~l~~~~~~i~~~r~~i-~ 128 (161)
T 2yjk_A 55 HELLDSVVAHAQDYADTAAERIVALGLP-IDSRVSTMAEKT-S-TA--VPAGFAQWQDEIKAIVSDIDAALVDLQAAI-D 128 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCHHHHHHTC-C-CC--SCSSCEEHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHhc-c-cc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4455555556666666666666666555 257777776654 1 11 122445777888887777665555555443 2
Q ss_pred HHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 124 l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+ ..+.+...++-+-|...||.+
T Consensus 129 a~~-------~~D~~T~dll~~il~~~Ek~~ 152 (161)
T 2yjk_A 129 GLD-------EVDLTSQDVAIEIKRGVDKDR 152 (161)
T ss_dssp HHT-------TTCHHHHHHHHHHHHHHHHHH
T ss_pred hcc-------cCCHHHHHHHHHHHHHHHHHH
Confidence 222 346778888888888888864
No 33
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=24.01 E-value=2.2e+02 Score=22.47 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHhhcCCCcHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKAD-L-FSESQRIAYTIETRTAGIPDARTYL 121 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~g-l-~s~~e~I~~tie~~~~~~~daR~yL 121 (240)
-+++...+.+..+.+..+.+-+..+.-+ .|+.+..+.+++. |.+..| - +++.+-+...++.+..-+...|.-.
T Consensus 52 h~~~ee~~~e~~~haD~lAERIl~LGg~-P~~t~~~~~~~s~----i~e~~~~~~~~~~eml~~~l~~~~~~i~~~r~~i 126 (165)
T 2cf7_A 52 HPKMDEYMEEIDGYLAEMSERLITLGGA-PFSTLKEFSENSQ----LKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGF 126 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCS----CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666655554 2466666666542 222233 3 4777888888887766655555544
Q ss_pred HHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 122 LTLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 122 ~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
..+.+ ..+.+...+|.+-+...||.+
T Consensus 127 ~~a~~-------~~D~~T~dll~~il~~~Ek~~ 152 (165)
T 2cf7_A 127 DVSDE-------EGDSVTNDIFNVAKASIEKHI 152 (165)
T ss_dssp HHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh-------CCCHHHHHHHHHHHHHHHHHH
Confidence 44433 345678888888888888764
No 34
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=23.95 E-value=93 Score=23.88 Aligned_cols=102 Identities=11% Similarity=0.152 Sum_probs=61.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHH
Q 026285 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKV 150 (240)
Q Consensus 71 ~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~a~mm~ALdkv 150 (240)
++++.+.+.|+.--.++ ..++--...+..++..-|+.++|+...+ ++....-. ..+|.||+.+
T Consensus 2 ~lt~~~~~~Vk~sw~~v----------~~~~~g~~~~~rlF~~~P~~k~~F~~f~------d~~~~~h~-~~v~~al~~~ 64 (136)
T 1gcv_B 2 HWTQEERDEISKTFQGT----------DMKTVVTQALDRMFKVYPWTNRYFQKRT------DFRSSIHA-GIVVGALQDA 64 (136)
T ss_dssp CCCHHHHHHHHHHHHHS----------CHHHHHHHHHHHHHHHSGGGGGGTTTCT------TCCHHHHH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHChHHHHHhhccc------CCCccHHH-HHHHHHHHHH
Confidence 44555555555544333 3444555666778888899999987532 22111222 3378888888
Q ss_pred HHhhCCccccccHhhHHHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHH
Q 026285 151 EKEIKKPLMRNDKKGMALLTAEFDKINK-KLGIRKEDLPKYEEQLELKI 198 (240)
Q Consensus 151 EK~igkpL~r~DkkGM~~L~ae~~kink-klGi~~eDl~K~eee~el~~ 198 (240)
=+.+.. +.-..+.+...-. ++|++|+.++-+-+-+.--+
T Consensus 65 v~~ld~---------l~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l 104 (136)
T 1gcv_B 65 VKHMDD---------VKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVEL 104 (136)
T ss_dssp HHTTTC---------HHHHTHHHHHHHHHTTCCCGGGHHHHHHHHHHHH
T ss_pred HHhHhh---------HHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHH
Confidence 776653 3444555555555 49999999998766554444
No 35
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=23.64 E-value=2.2e+02 Score=22.77 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHhhcCCCcHHHHHH
Q 026285 44 DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF-SESQRIAYTIETRTAGIPDARTYLL 122 (240)
Q Consensus 44 dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~-s~~e~I~~tie~~~~~~~daR~yL~ 122 (240)
-+++...+.+..+.+..+.+-+..+.-. .++.+..+.+++..-. ...|-+ ++.+.+...++.+..-+...|.-..
T Consensus 62 h~~~ee~~~e~~~~aD~lAERIl~LGg~-P~~t~~~~~~~s~i~e---~~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~ 137 (175)
T 2wlu_A 62 HPKMDELLDSLNANLDEVSERLITIGGA-PYSTLAEFSKHSKLDE---AKGTYDKTVAQHLARLVEVYLYLSSLYQVGLD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCSCCC---CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHhCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666655555544 2466666666542211 134445 7778888888777665555555444
Q ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 123 TLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 123 ~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.+.+ ..+.+...+|-+-+...||.+
T Consensus 138 ~ae~-------~~D~~T~dll~~il~~~Ek~~ 162 (175)
T 2wlu_A 138 ITDE-------EGDAGTNDLFTAAKTEAEKTI 162 (175)
T ss_dssp HHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 4443 246678888888888888764
No 36
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=23.17 E-value=32 Score=27.45 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHH
Q 026285 56 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQ 101 (240)
Q Consensus 56 kkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e 101 (240)
+.|-+++-.|-..|.-. ++...--..|-+..+-.+++|||+++++
T Consensus 59 ND~alAVR~lE~iK~K~-~~~~~iY~~~lqElkPtl~ELGI~t~Ee 103 (109)
T 1v54_E 59 NDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGISTPEE 103 (109)
T ss_dssp TCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHHHHHHHHHTCCCTTT
T ss_pred hhHHHHHHHHHHHHHHh-cCchhhHHHHHHHHhhHHHHhCCCCHHH
Confidence 45667777777666664 3333335566777778888888888875
No 37
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=22.38 E-value=3.8e+02 Score=23.22 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=49.7
Q ss_pred hhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCc----HHHHHH-----------HHHHHHH
Q 026285 65 LRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPD----ARTYLL-----------TLKEIRE 129 (240)
Q Consensus 65 lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~d----aR~yL~-----------~l~EiR~ 129 (240)
|.+-|+. + -++.|.+....+...-+..--....|+|...++.+..+... .++|+. -|.+++.
T Consensus 37 L~~Rk~~-~--~~~~~~~~~e~~~~y~e~~~d~e~~qkl~~l~~~L~~~~~~~~~~L~~~l~~f~~DpSd~~laL~~ll~ 113 (246)
T 1xkp_A 37 LDXRXLS-D--SQARVSDVEEQVNQYLSXVPELEQXQNVSELLSLLSNSPNISLSQLXAYLEGXSEEPSEQFXMLCGLRD 113 (246)
T ss_dssp GGGSCEE-E--HHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cchhhhc-c--ccchhhHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCCcccHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 5555554 2 23344444444444444444444455555555554333222 333333 3778888
Q ss_pred HcCCCchh-hhHHHHHHHHHHHHHhhC
Q 026285 130 RRGLIDEH-GAEAMMMDALEKVEKEIK 155 (240)
Q Consensus 130 ~~Gl~D~~-G~~a~mm~ALdkvEK~ig 155 (240)
..|..... +.-+.+.+||.++|.+-|
T Consensus 114 ~~~~~p~~~~l~~~l~~aL~~l~q~~g 140 (246)
T 1xkp_A 114 ALXGRPELAHLSHLVEQALVSMAEEQG 140 (246)
T ss_dssp HHHSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHhcC
Confidence 88886544 556678899999998887
No 38
>3l4a_A Odorant binding protein (AGAP010409-PA); all alpha helix, transport protein; 1.50A {Anopheles gambiae} PDB: 3l47_A 3l4l_A 3l5g_A 3pji_A 3qme_A
Probab=21.86 E-value=1.4e+02 Score=23.23 Aligned_cols=66 Identities=8% Similarity=0.050 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhhCCc
Q 026285 84 ANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKP 157 (240)
Q Consensus 84 A~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~igkp 157 (240)
..++....++.++.|+++.|.....+..-+-+.++=|+.=+.. ++|+-|+.|..- ++.+-.++|.|
T Consensus 5 ~~i~~eC~~~~~ivs~~e~l~~~~~g~fpdD~~~kCyirCv~~---~~g~~dd~gg~~-----~d~~~~q~~~p 70 (141)
T 3l4a_A 5 ESVIESCSNAVQGAANDELKVHYRANEFPDDPVTHCFVRCIGL---ELNLYDDKYGVD-----LQANWENLGNS 70 (141)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHTTCCCSSHHHHHHHHHHHH---HTTSEETTTEEB-----HHHHHHHTTCC
T ss_pred hHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCccchHHHhHhh---hcccEeCCCCcc-----HHHHHHHHCCC
Confidence 4678888999999999998888888866667889999999988 999976665332 45566677777
No 39
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=21.82 E-value=1.1e+02 Score=23.47 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhccccccCCCCHHHHHHHHHHHH
Q 026285 55 KKKFETALGVLRKEKITIAPEDPAAVSQYANVMK 88 (240)
Q Consensus 55 qkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~ 88 (240)
.+.-..+++.|++ +|.||+.+..|-.++-
T Consensus 27 ~~~v~~Ai~~L~~-----~PsnPa~LAeyQ~kl~ 55 (85)
T 2ca5_A 27 QGELTLALDKLAK-----NPSNPQLLAEYQSKLS 55 (85)
T ss_dssp HHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH
Confidence 3334456666663 8999999999987763
No 40
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=21.33 E-value=84 Score=24.02 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=63.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhh------hHHHHH
Q 026285 71 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHG------AEAMMM 144 (240)
Q Consensus 71 ~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G------~~a~mm 144 (240)
++++.+-+.|+.--.+++.- ..+--......++..-|+.|+|....+ ++....| =-..+|
T Consensus 9 ~Lt~~~~~~I~~sw~~v~~~--------~~~~g~~~~~rlF~~~P~~k~~F~~~~------~~~~~~~n~~~~~h~~~v~ 74 (146)
T 3g46_A 9 QLTADVKKDLRDSWKVIGSD--------KKGNGVALMTTLFADNQETIGYFKRLG------DVSQGMANDKLRGHSITLM 74 (146)
T ss_dssp TCCHHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHCGGGGGGGGGGC------CGGGGGGCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcC--------HHHHHHHHHHHHHHHCHHHHHHHHHHc------CCCCcccCHHHHHHHHHHH
Confidence 45566666666655554432 223334556668888899999887542 2222112 122377
Q ss_pred HHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 026285 145 DALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLE 195 (240)
Q Consensus 145 ~ALdkvEK~igkpL~r~DkkGM~~L~ae~~kinkklGi~~eDl~K~eee~e 195 (240)
.+|+.+=+.+ +|...+.-+...+..--.++||+|+.++-+.+-+.
T Consensus 75 ~al~~~v~~l------dd~~~l~~~l~~l~~~H~~~~V~p~~f~~~~~~ll 119 (146)
T 3g46_A 75 YALQNFIDQL------DNPDDLVCVVEKFAVNHITRKISAAEFGKINGPIK 119 (146)
T ss_dssp HHHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHHH
T ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8888777665 45455666666666655688999999887765443
No 41
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=21.24 E-value=2.5e+02 Score=23.32 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHhhcCCCcHHHHHHH
Q 026285 45 EMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF-SESQRIAYTIETRTAGIPDARTYLLT 123 (240)
Q Consensus 45 d~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~-s~~e~I~~tie~~~~~~~daR~yL~~ 123 (240)
+.+...+.+..+.+..+.+-+..+.-+ .++.+..+.+++..-. ...|-+ ++.+-+...++.+..-+...|.-...
T Consensus 79 ~~~ee~~~e~~~haD~lAERIl~LGG~-P~~t~~~~~~~s~i~e---~~~g~~~~~~emL~~ll~~e~~~i~~~re~i~~ 154 (199)
T 2xgw_A 79 PKMDELLDSLNANLDEVSERLITIGGA-PYSTLAEFSKHSKLDE---AKGTYDKTVAQHLARLVEVYLYLSSLYQVGLDI 154 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCSCCC---CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHCCCCc---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555554444 2456666655532211 134445 77788888887776666655555544
Q ss_pred HHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 124 LKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 124 l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+ ..+.+...++-+-|...||.+
T Consensus 155 aee-------~~D~~T~dll~~il~~~Ekh~ 178 (199)
T 2xgw_A 155 TDE-------EGDAGTNDLFTAAKTEAEKTI 178 (199)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 444 246677787878888877754
No 42
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.17 E-value=2e+02 Score=22.40 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCCChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Q 026285 169 LTAEFDKINKKLGIRKEDLPK---YEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVR 237 (240)
Q Consensus 169 L~ae~~kinkklGi~~eDl~K---~eee~el~~aK~~L~elkk~a~e~m~~~kkree~k~e~~~dvk~Ld~r 237 (240)
-..++...++.++-+|.|.-| -.-+.+...+++-|-+||..--++..+.+.. ...+||++++--
T Consensus 24 A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k~~-----~k~~DpTG~Epd 90 (96)
T 2ic9_A 24 TRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQKLA-----SKPVDPTGIEPD 90 (96)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cCCCCCCCCCCc
Confidence 345677788889999998755 3456778899999999999999998877533 367888877543
No 43
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=20.42 E-value=2e+02 Score=22.65 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 026285 45 EMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTL 124 (240)
Q Consensus 45 d~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~daR~yL~~l 124 (240)
+++...+.+..+.+..+.+-+....-+ .|+.+..+.+++..-. ...|.+++.+-+...++.+..-+...|.-...+
T Consensus 54 ~~~ee~~~e~~~~aD~lAERIl~LGg~-P~~t~~~~~~~s~i~e---~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a 129 (161)
T 2z90_A 54 LQLDELVDFAREGSDTIAERMRALDAV-PDGRSDTVAATTTLPE---FPAFERSTADVVDLITTRINATVDTIRRVHDAV 129 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCHHHHHHHCCSCC---CCSSCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHhHCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555556666666666655544 2566666666532111 012235677788888777766666666555444
Q ss_pred HHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 125 KEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 125 ~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
.+ . +.+...++-+-|...||.+
T Consensus 130 ~~-------~-D~~T~dll~~il~~~Ek~~ 151 (161)
T 2z90_A 130 DA-------E-DPSTADLLHGLIDGLEKQA 151 (161)
T ss_dssp HH-------H-CHHHHHHHHHHHHHHHHHH
T ss_pred cC-------C-CHHHHHHHHHHHHHHHHHH
Confidence 44 3 6778888888888888764
No 44
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=20.04 E-value=3e+02 Score=21.07 Aligned_cols=114 Identities=8% Similarity=0.001 Sum_probs=67.3
Q ss_pred HhhhhhhcCCcCCCc-hhHHHHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 026285 29 VRFFANEAAPQALKG-DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTI 107 (240)
Q Consensus 29 vR~fA~~Aap~~~kg-dd~lK~iF~~vqkkF~~~l~~lkk~ki~idp~DpaAV~~YA~~~~~ir~k~gl~s~~e~I~~ti 107 (240)
.++|.--...+.+.| -..+...+.+....+..+.+-+....-+. +..+..+.+++..-. -..| +|+.+.+...+
T Consensus 26 ~~~~hw~v~g~~f~~lh~~~~~~~~ee~~had~iaERI~~lGg~p-~~~~~~~~~~s~i~~---~~~~-~~~~e~l~~~l 100 (156)
T 2d5k_A 26 LHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNP-VGTLTECLEQSIVKE---AAKG-YSAEQMVEELS 100 (156)
T ss_dssp HHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-CCSHHHHHHHCSSCC---CCSC-CCHHHHHHHHH
T ss_pred HHhheeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHCCCCC---CCCC-CCHHHHHHHHH
Confidence 344443333344333 34555555555566666666666555442 466777666653221 1234 37888888888
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHhh
Q 026285 108 ETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEI 154 (240)
Q Consensus 108 e~~~~~~~daR~yL~~l~EiR~~~Gl~D~~G~~a~mm~ALdkvEK~i 154 (240)
+.+..-+...|.-...+.+ ..+.++..++-.-+++.||.+
T Consensus 101 ~~e~~~~~~~~~~i~~a~~-------~~D~~T~~ll~~~l~e~Ek~~ 140 (156)
T 2d5k_A 101 QDFTNISKQLENAIEIAGN-------AGDDVSEDMFIGMQTSVDKHN 140 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHH
Confidence 8777666666555544444 246778888888888888764
Done!